Query 003924
Match_columns 786
No_of_seqs 466 out of 3188
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 14:25:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003924.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003924hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0337 ATP-dependent RNA heli 100.0 1.1E-96 2E-101 773.4 29.9 508 11-552 9-517 (529)
2 KOG0330 ATP-dependent RNA heli 100.0 4.5E-74 9.7E-79 598.5 32.8 372 21-396 59-430 (476)
3 KOG0338 ATP-dependent RNA heli 100.0 2.4E-71 5.2E-76 592.7 33.4 360 23-384 181-544 (691)
4 KOG0345 ATP-dependent RNA heli 100.0 4.4E-70 9.5E-75 580.0 36.3 430 22-486 3-444 (567)
5 KOG0331 ATP-dependent RNA heli 100.0 1.3E-69 2.7E-74 600.8 36.0 371 24-395 92-470 (519)
6 KOG0342 ATP-dependent RNA heli 100.0 1.1E-68 2.5E-73 573.4 34.1 417 22-474 81-503 (543)
7 COG0513 SrmB Superfamily II DN 100.0 4.7E-68 1E-72 610.2 40.2 365 23-390 29-398 (513)
8 KOG0343 RNA Helicase [RNA proc 100.0 1.5E-67 3.2E-72 567.9 34.2 417 22-474 68-491 (758)
9 KOG0340 ATP-dependent RNA heli 100.0 3.7E-67 8E-72 541.0 29.9 372 21-394 5-382 (442)
10 KOG0328 Predicted ATP-dependen 100.0 1.1E-65 2.5E-70 515.0 27.9 373 17-394 21-394 (400)
11 KOG0333 U5 snRNP-like RNA heli 100.0 2.2E-65 4.7E-70 549.2 31.8 364 22-388 244-639 (673)
12 PRK04837 ATP-dependent RNA hel 100.0 1.8E-62 3.9E-67 555.5 41.6 369 22-393 7-382 (423)
13 PTZ00110 helicase; Provisional 100.0 1.2E-61 2.6E-66 561.9 42.1 371 22-393 129-504 (545)
14 KOG0348 ATP-dependent RNA heli 100.0 5E-62 1.1E-66 524.0 34.6 366 19-384 132-565 (708)
15 PRK11634 ATP-dependent RNA hel 100.0 1.3E-60 2.8E-65 558.5 48.1 371 23-398 6-379 (629)
16 PRK04537 ATP-dependent RNA hel 100.0 3.5E-61 7.5E-66 560.1 42.5 371 23-395 9-386 (572)
17 PRK11776 ATP-dependent RNA hel 100.0 5.5E-61 1.2E-65 549.0 41.9 364 22-391 3-367 (460)
18 KOG0326 ATP-dependent RNA heli 100.0 3.1E-63 6.6E-68 504.6 20.5 370 20-395 82-451 (459)
19 PRK10590 ATP-dependent RNA hel 100.0 7.7E-61 1.7E-65 546.4 42.0 363 24-389 2-368 (456)
20 PLN00206 DEAD-box ATP-dependen 100.0 5.8E-60 1.3E-64 546.0 41.5 370 22-393 120-495 (518)
21 PRK11192 ATP-dependent RNA hel 100.0 4.1E-59 8.9E-64 530.0 42.4 363 24-389 2-368 (434)
22 KOG0336 ATP-dependent RNA heli 100.0 4.2E-60 9.1E-65 494.3 24.8 369 22-393 218-592 (629)
23 KOG0346 RNA helicase [RNA proc 100.0 2E-59 4.4E-64 494.3 27.8 363 23-386 19-423 (569)
24 PRK01297 ATP-dependent RNA hel 100.0 1E-57 2.2E-62 523.8 43.6 366 22-390 86-459 (475)
25 KOG0335 ATP-dependent RNA heli 100.0 1.7E-59 3.7E-64 511.7 27.0 371 22-393 73-464 (482)
26 KOG0341 DEAD-box protein abstr 100.0 2.2E-60 4.7E-65 493.5 17.8 368 22-393 169-549 (610)
27 KOG0347 RNA helicase [RNA proc 100.0 4.2E-60 9E-65 510.5 19.8 366 20-388 178-585 (731)
28 KOG0339 ATP-dependent RNA heli 100.0 4.8E-58 1E-62 489.8 32.2 363 20-384 220-586 (731)
29 KOG0334 RNA helicase [RNA proc 100.0 4.8E-57 1E-61 522.0 30.1 372 21-393 363-740 (997)
30 PTZ00424 helicase 45; Provisio 100.0 1.4E-55 3E-60 496.0 40.7 367 22-393 27-394 (401)
31 KOG0327 Translation initiation 100.0 4.6E-55 1E-59 458.4 24.5 366 23-395 26-392 (397)
32 KOG0332 ATP-dependent RNA heli 100.0 1.5E-54 3.3E-59 449.8 26.3 360 22-388 89-459 (477)
33 KOG0350 DEAD-box ATP-dependent 100.0 6.8E-52 1.5E-56 443.5 25.0 358 24-384 128-551 (620)
34 TIGR03817 DECH_helic helicase/ 100.0 1.8E-50 4E-55 481.5 40.0 354 30-391 21-406 (742)
35 KOG4284 DEAD box protein [Tran 100.0 1.8E-50 4E-55 441.2 22.5 355 21-381 23-388 (980)
36 KOG0344 ATP-dependent RNA heli 100.0 7.4E-49 1.6E-53 430.2 25.7 357 29-387 142-509 (593)
37 TIGR00614 recQ_fam ATP-depende 100.0 5.9E-46 1.3E-50 425.3 36.1 325 40-382 6-342 (470)
38 PLN03137 ATP-dependent DNA hel 100.0 1.9E-45 4.1E-50 435.9 39.1 342 22-381 434-795 (1195)
39 PRK11057 ATP-dependent DNA hel 100.0 2.6E-44 5.7E-49 422.5 37.5 332 29-381 8-351 (607)
40 PRK02362 ski2-like helicase; P 100.0 5.3E-44 1.2E-48 429.6 33.9 338 24-374 2-398 (737)
41 TIGR02621 cas3_GSU0051 CRISPR- 100.0 9E-44 1.9E-48 416.9 34.2 315 41-372 12-390 (844)
42 PRK13767 ATP-dependent helicas 100.0 2.7E-43 5.8E-48 427.8 39.3 340 30-371 18-396 (876)
43 TIGR00580 mfd transcription-re 100.0 9.5E-43 2.1E-47 419.2 39.4 349 1-373 393-770 (926)
44 TIGR01389 recQ ATP-dependent D 100.0 1E-42 2.2E-47 409.6 36.0 320 41-381 9-339 (591)
45 PRK00254 ski2-like helicase; P 100.0 1.2E-42 2.6E-47 416.9 36.6 341 24-375 2-390 (720)
46 KOG0329 ATP-dependent RNA heli 100.0 2.8E-44 6.1E-49 356.2 15.8 333 21-393 40-376 (387)
47 PRK10689 transcription-repair 100.0 6.9E-42 1.5E-46 419.8 38.6 347 1-372 542-918 (1147)
48 PRK10917 ATP-dependent DNA hel 100.0 1.3E-40 2.9E-45 395.3 37.4 318 32-371 248-587 (681)
49 TIGR00643 recG ATP-dependent D 100.0 7.2E-40 1.6E-44 386.6 38.0 319 32-371 223-564 (630)
50 PRK01172 ski2-like helicase; P 100.0 4.1E-40 8.8E-45 393.2 34.8 336 24-377 2-383 (674)
51 PRK09401 reverse gyrase; Revie 100.0 4E-40 8.6E-45 405.1 33.4 283 41-345 77-410 (1176)
52 PHA02653 RNA helicase NPH-II; 100.0 5.5E-39 1.2E-43 375.0 36.3 313 47-376 166-517 (675)
53 PRK09751 putative ATP-dependen 100.0 9.8E-39 2.1E-43 393.6 34.5 323 65-391 1-405 (1490)
54 COG1201 Lhr Lhr-like helicases 100.0 8.7E-39 1.9E-43 373.1 32.1 340 30-372 8-361 (814)
55 TIGR01970 DEAH_box_HrpB ATP-de 100.0 2.8E-38 6.1E-43 377.1 35.8 309 49-377 6-340 (819)
56 PRK11664 ATP-dependent RNA hel 100.0 5.5E-38 1.2E-42 375.3 33.1 307 50-376 10-342 (812)
57 TIGR01054 rgy reverse gyrase. 100.0 8.6E-38 1.9E-42 385.0 34.7 290 34-344 67-408 (1171)
58 PRK12898 secA preprotein trans 100.0 1.1E-37 2.4E-42 358.7 32.2 320 41-374 100-587 (656)
59 PRK14701 reverse gyrase; Provi 100.0 9E-38 1.9E-42 391.5 32.0 325 33-379 67-462 (1638)
60 PHA02558 uvsW UvsW helicase; P 100.0 4.4E-37 9.6E-42 354.2 30.0 309 43-370 112-449 (501)
61 KOG0349 Putative DEAD-box RNA 100.0 3.8E-38 8.3E-43 331.5 18.5 292 93-387 286-629 (725)
62 COG1111 MPH1 ERCC4-like helica 100.0 1E-35 2.3E-40 322.4 35.0 330 42-379 12-489 (542)
63 TIGR01587 cas3_core CRISPR-ass 100.0 9.6E-37 2.1E-41 338.1 27.6 299 62-373 1-336 (358)
64 PRK09200 preprotein translocas 100.0 2.6E-36 5.6E-41 354.3 32.6 322 41-375 75-543 (790)
65 TIGR03714 secA2 accessory Sec 100.0 7.5E-35 1.6E-39 338.9 39.0 322 41-375 67-539 (762)
66 TIGR00963 secA preprotein tran 100.0 2.2E-34 4.7E-39 333.0 38.9 321 41-375 53-519 (745)
67 PRK05580 primosome assembly pr 100.0 4E-34 8.6E-39 338.8 37.3 394 45-456 144-656 (679)
68 COG0514 RecQ Superfamily II DN 100.0 1.2E-34 2.6E-39 327.8 31.1 320 41-381 13-345 (590)
69 PRK13766 Hef nuclease; Provisi 100.0 2.3E-33 4.9E-38 340.8 37.5 326 42-375 12-481 (773)
70 TIGR03158 cas3_cyano CRISPR-as 100.0 1.6E-33 3.4E-38 311.4 29.6 290 49-358 1-357 (357)
71 PRK11131 ATP-dependent RNA hel 100.0 6.1E-33 1.3E-37 337.1 31.5 304 47-376 76-414 (1294)
72 COG1202 Superfamily II helicas 100.0 2.9E-33 6.2E-38 304.2 24.5 340 23-373 194-553 (830)
73 COG1204 Superfamily II helicas 100.0 7E-33 1.5E-37 327.8 27.9 342 28-380 14-416 (766)
74 COG1205 Distinct helicase fami 100.0 3.4E-32 7.4E-37 326.1 31.3 353 30-386 55-437 (851)
75 TIGR00595 priA primosomal prot 100.0 5E-32 1.1E-36 310.5 28.9 371 64-452 1-483 (505)
76 TIGR00603 rad25 DNA repair hel 100.0 7E-32 1.5E-36 314.2 28.0 318 45-386 255-622 (732)
77 KOG0354 DEAD-box like helicase 100.0 4.6E-31 9.9E-36 301.6 27.9 344 30-381 47-537 (746)
78 TIGR01967 DEAH_box_HrpA ATP-de 100.0 5.8E-30 1.3E-34 312.3 34.3 315 41-377 60-408 (1283)
79 cd00268 DEADc DEAD-box helicas 100.0 8.6E-30 1.9E-34 259.5 24.5 202 25-227 1-202 (203)
80 PRK13104 secA preprotein trans 100.0 1.2E-28 2.5E-33 289.0 35.1 322 41-374 79-588 (896)
81 PRK12899 secA preprotein trans 100.0 3.2E-28 7E-33 284.6 38.1 148 26-181 65-228 (970)
82 PRK04914 ATP-dependent helicas 100.0 1.3E-28 2.9E-33 295.9 34.3 345 45-400 152-634 (956)
83 PRK09694 helicase Cas3; Provis 100.0 7E-29 1.5E-33 296.6 31.4 312 44-362 285-664 (878)
84 KOG0352 ATP-dependent DNA heli 100.0 5.1E-29 1.1E-33 262.9 24.3 328 34-381 7-370 (641)
85 COG1200 RecG RecG-like helicas 100.0 1E-27 2.2E-32 270.7 34.0 330 23-374 240-592 (677)
86 PRK12904 preprotein translocas 100.0 3.3E-27 7.3E-32 276.7 38.3 319 41-374 78-574 (830)
87 KOG0351 ATP-dependent DNA heli 100.0 1.3E-28 2.8E-33 293.4 26.3 331 34-381 253-600 (941)
88 KOG0952 DNA/RNA helicase MER3/ 100.0 1.1E-27 2.4E-32 276.0 28.5 335 40-381 105-499 (1230)
89 COG1061 SSL2 DNA or RNA helica 100.0 7.7E-28 1.7E-32 272.7 26.7 292 44-359 35-375 (442)
90 COG1197 Mfd Transcription-repa 100.0 5.9E-27 1.3E-31 277.4 32.1 350 1-374 536-914 (1139)
91 PRK12906 secA preprotein trans 100.0 5.1E-27 1.1E-31 274.2 27.5 320 41-374 77-554 (796)
92 COG1198 PriA Primosomal protei 100.0 2.5E-26 5.4E-31 267.3 28.8 410 27-451 158-704 (730)
93 KOG0353 ATP-dependent DNA heli 99.9 4.6E-26 1E-30 237.0 23.6 339 26-378 74-472 (695)
94 PRK11448 hsdR type I restricti 99.9 3.6E-25 7.8E-30 271.8 33.4 309 44-361 412-801 (1123)
95 PRK13107 preprotein translocas 99.9 3E-25 6.4E-30 259.7 30.5 320 41-374 79-592 (908)
96 KOG0951 RNA helicase BRR2, DEA 99.9 9E-25 2E-29 254.4 26.5 341 30-381 296-710 (1674)
97 PF00270 DEAD: DEAD/DEAH box h 99.9 1.4E-24 3.1E-29 213.8 19.6 165 47-215 1-168 (169)
98 COG4098 comFA Superfamily II D 99.9 4.2E-23 9.1E-28 214.1 29.5 302 45-373 97-416 (441)
99 PLN03142 Probable chromatin-re 99.9 9.7E-23 2.1E-27 246.2 33.6 319 45-374 169-600 (1033)
100 COG1643 HrpA HrpA-like helicas 99.9 1.2E-22 2.5E-27 240.0 30.8 336 46-411 51-414 (845)
101 COG1203 CRISPR-associated heli 99.9 5.5E-23 1.2E-27 246.3 26.4 331 45-380 195-557 (733)
102 KOG0947 Cytoplasmic exosomal R 99.9 5.6E-23 1.2E-27 234.7 23.7 320 41-382 294-731 (1248)
103 COG4581 Superfamily II RNA hel 99.9 1E-22 2.3E-27 241.6 26.4 318 36-373 111-537 (1041)
104 KOG0950 DNA polymerase theta/e 99.9 3.9E-23 8.5E-28 238.1 20.7 339 35-381 213-619 (1008)
105 KOG0922 DEAH-box RNA helicase 99.9 3.8E-22 8.3E-27 223.5 27.4 360 48-438 54-444 (674)
106 KOG0923 mRNA splicing factor A 99.9 5.9E-22 1.3E-26 219.3 23.3 311 45-373 265-606 (902)
107 PRK12900 secA preprotein trans 99.9 8.3E-21 1.8E-25 223.3 29.0 128 246-375 578-713 (1025)
108 TIGR00631 uvrb excinuclease AB 99.9 1.9E-20 4.1E-25 220.2 32.1 132 249-381 425-561 (655)
109 TIGR01407 dinG_rel DnaQ family 99.9 6.1E-20 1.3E-24 224.2 36.3 335 30-373 231-814 (850)
110 COG1110 Reverse gyrase [DNA re 99.9 3.5E-20 7.5E-25 214.7 30.8 280 41-344 79-416 (1187)
111 KOG0948 Nuclear exosomal RNA h 99.9 4.9E-22 1.1E-26 222.2 14.5 309 45-373 129-539 (1041)
112 KOG0925 mRNA splicing factor A 99.9 3E-20 6.5E-25 199.8 27.3 382 22-438 24-442 (699)
113 PRK05298 excinuclease ABC subu 99.9 7.7E-20 1.7E-24 216.4 33.2 144 250-394 430-587 (652)
114 KOG0924 mRNA splicing factor A 99.9 1.8E-20 3.9E-25 207.7 25.3 313 42-373 353-697 (1042)
115 TIGR00348 hsdR type I site-spe 99.9 8.8E-20 1.9E-24 216.6 29.4 313 45-372 238-650 (667)
116 PRK12326 preprotein translocas 99.9 3.5E-19 7.5E-24 204.6 30.5 319 41-374 75-548 (764)
117 COG4096 HsdR Type I site-speci 99.8 8.1E-20 1.8E-24 209.2 22.4 297 44-360 164-525 (875)
118 PF08147 DBP10CT: DBP10CT (NUC 99.8 6.3E-22 1.4E-26 160.2 3.3 62 628-691 1-63 (64)
119 COG0556 UvrB Helicase subunit 99.8 2.3E-19 5.1E-24 195.7 23.4 166 199-372 386-556 (663)
120 KOG0385 Chromatin remodeling c 99.8 4.9E-19 1.1E-23 199.4 24.9 320 45-375 167-601 (971)
121 PRK13103 secA preprotein trans 99.8 1.2E-18 2.6E-23 204.7 26.6 317 41-374 79-592 (913)
122 smart00487 DEXDc DEAD-like hel 99.8 4.8E-19 1E-23 177.1 20.2 186 40-229 3-190 (201)
123 KOG0920 ATP-dependent RNA heli 99.8 6.1E-19 1.3E-23 207.8 24.2 319 45-377 173-548 (924)
124 KOG0926 DEAH-box RNA helicase 99.8 1.3E-18 2.9E-23 195.9 21.9 302 52-373 263-704 (1172)
125 PRK07246 bifunctional ATP-depe 99.8 7.3E-18 1.6E-22 203.7 29.8 321 37-373 238-783 (820)
126 PRK12903 secA preprotein trans 99.8 1.7E-16 3.6E-21 184.9 34.4 319 41-374 75-540 (925)
127 KOG0384 Chromodomain-helicase 99.8 1.5E-18 3.3E-23 203.8 15.5 330 24-374 355-812 (1373)
128 CHL00122 secA preprotein trans 99.7 2.1E-16 4.5E-21 185.2 26.6 279 41-333 73-491 (870)
129 KOG1123 RNA polymerase II tran 99.7 7.2E-18 1.6E-22 181.9 12.4 318 45-385 302-667 (776)
130 KOG0387 Transcription-coupled 99.7 2.2E-16 4.7E-21 179.2 23.9 316 45-374 205-659 (923)
131 KOG0949 Predicted helicase, DE 99.7 1.1E-15 2.4E-20 175.8 26.4 167 45-218 511-682 (1330)
132 PRK12902 secA preprotein trans 99.7 6E-15 1.3E-19 172.7 32.4 280 41-334 82-507 (939)
133 KOG0390 DNA repair protein, SN 99.7 2.9E-15 6.2E-20 174.4 28.6 321 45-372 238-706 (776)
134 COG4889 Predicted helicase [Ge 99.7 1.1E-17 2.5E-22 189.4 8.4 315 36-360 152-572 (1518)
135 cd00079 HELICc Helicase superf 99.7 1.2E-16 2.7E-21 150.0 14.0 121 249-369 11-131 (131)
136 PRK08074 bifunctional ATP-depe 99.7 1.2E-14 2.6E-19 178.8 34.7 124 250-373 735-893 (928)
137 PRK14873 primosome assembly pr 99.7 3E-15 6.5E-20 176.0 26.3 279 64-373 164-539 (665)
138 KOG0953 Mitochondrial RNA heli 99.7 6.3E-16 1.4E-20 169.5 16.3 278 61-388 192-488 (700)
139 TIGR03117 cas_csf4 CRISPR-asso 99.7 2.7E-14 5.8E-19 166.1 30.4 79 265-345 469-561 (636)
140 cd00046 DEXDc DEAD-like helica 99.7 2.3E-15 5E-20 141.5 16.5 144 61-209 1-144 (144)
141 KOG0389 SNF2 family DNA-depend 99.6 5.7E-15 1.2E-19 167.5 20.3 321 45-375 399-890 (941)
142 KOG0392 SNF2 family DNA-depend 99.6 2.3E-14 5E-19 168.3 24.7 343 22-373 931-1454(1549)
143 KOG1000 Chromatin remodeling p 99.6 1.8E-14 4E-19 155.9 21.5 307 45-366 198-594 (689)
144 KOG4150 Predicted ATP-dependen 99.6 1.7E-14 3.7E-19 157.7 19.8 343 40-388 281-657 (1034)
145 PF00271 Helicase_C: Helicase 99.6 1.1E-15 2.3E-20 131.3 8.3 78 284-361 1-78 (78)
146 PF04851 ResIII: Type III rest 99.6 8.5E-15 1.8E-19 145.7 13.3 153 45-210 3-183 (184)
147 TIGR02562 cas3_yersinia CRISPR 99.6 1.2E-13 2.7E-18 164.0 23.4 327 45-378 408-899 (1110)
148 KOG0951 RNA helicase BRR2, DEA 99.6 7.4E-14 1.6E-18 164.4 21.0 318 44-388 1142-1506(1674)
149 PRK12901 secA preprotein trans 99.6 5.9E-13 1.3E-17 157.6 26.7 125 247-374 609-742 (1112)
150 PRK11747 dinG ATP-dependent DN 99.6 2E-12 4.3E-17 154.7 31.6 121 250-373 518-674 (697)
151 COG1199 DinG Rad3-related DNA 99.5 4.3E-12 9.3E-17 152.1 28.4 120 251-373 463-617 (654)
152 PF06862 DUF1253: Protein of u 99.5 2.1E-11 4.6E-16 135.7 27.8 288 92-380 36-422 (442)
153 smart00490 HELICc helicase sup 99.5 2.3E-13 5E-18 116.7 8.8 81 281-361 2-82 (82)
154 TIGR00604 rad3 DNA repair heli 99.4 2.4E-11 5.3E-16 146.3 28.8 74 41-116 6-83 (705)
155 KOG0386 Chromatin remodeling c 99.4 1.2E-12 2.5E-17 152.3 15.4 317 45-371 394-834 (1157)
156 COG0610 Type I site-specific r 99.4 3.5E-10 7.6E-15 139.0 32.2 297 61-371 274-651 (962)
157 KOG1002 Nucleotide excision re 99.3 7.2E-11 1.6E-15 128.2 20.2 109 267-375 639-751 (791)
158 PF02399 Herpes_ori_bp: Origin 99.3 2.8E-10 6.1E-15 132.8 22.4 289 63-373 52-388 (824)
159 KOG0388 SNF2 family DNA-depend 99.3 1.7E-10 3.7E-15 129.6 19.2 123 251-373 1029-1154(1185)
160 COG0653 SecA Preprotein transl 99.2 3.4E-09 7.4E-14 124.7 28.2 318 42-374 78-546 (822)
161 COG0553 HepA Superfamily II DN 99.2 6.5E-10 1.4E-14 137.4 23.3 125 250-374 692-823 (866)
162 KOG0391 SNF2 family DNA-depend 99.2 8.8E-10 1.9E-14 129.2 21.5 112 264-375 1274-1389(1958)
163 PF07652 Flavi_DEAD: Flaviviru 99.2 3.5E-11 7.5E-16 113.5 7.2 138 60-216 4-143 (148)
164 PF00176 SNF2_N: SNF2 family N 99.2 2E-10 4.3E-15 123.7 13.5 153 49-209 1-172 (299)
165 KOG4439 RNA polymerase II tran 99.1 1.5E-09 3.2E-14 122.7 19.1 119 250-368 729-851 (901)
166 KOG2340 Uncharacterized conser 99.1 3.7E-09 8E-14 116.3 19.3 335 44-379 215-674 (698)
167 smart00488 DEXDc2 DEAD-like he 99.0 3.2E-09 7E-14 114.3 14.7 74 42-116 6-84 (289)
168 smart00489 DEXDc3 DEAD-like he 99.0 3.2E-09 7E-14 114.3 14.7 74 42-116 6-84 (289)
169 KOG0921 Dosage compensation co 98.9 2E-08 4.3E-13 116.1 15.7 358 55-429 388-824 (1282)
170 KOG1015 Transcription regulato 98.9 6.3E-08 1.4E-12 112.3 19.7 119 251-369 1127-1271(1567)
171 PF07517 SecA_DEAD: SecA DEAD- 98.6 5.2E-07 1.1E-11 95.2 13.6 131 41-181 74-210 (266)
172 PRK15483 type III restriction- 98.5 1.3E-06 2.8E-11 105.4 15.1 143 62-211 61-240 (986)
173 COG3587 Restriction endonuclea 98.2 7.9E-05 1.7E-09 87.3 20.6 73 315-387 482-567 (985)
174 TIGR00596 rad1 DNA repair prot 98.2 2.9E-05 6.3E-10 93.8 17.8 69 142-211 6-74 (814)
175 PF13604 AAA_30: AAA domain; P 98.2 7.4E-06 1.6E-10 83.3 10.4 124 45-208 1-130 (196)
176 PF13086 AAA_11: AAA domain; P 98.2 3.9E-06 8.4E-11 86.5 8.5 69 46-115 2-75 (236)
177 KOG0952 DNA/RNA helicase MER3/ 98.1 1.8E-06 3.9E-11 102.2 5.0 132 46-183 928-1061(1230)
178 TIGR00376 DNA helicase, putati 98.1 0.00035 7.6E-09 83.3 22.5 67 44-115 156-223 (637)
179 KOG1016 Predicted DNA helicase 98.1 0.00026 5.5E-09 81.7 20.0 107 266-372 719-846 (1387)
180 PF02562 PhoH: PhoH-like prote 98.0 9.7E-06 2.1E-10 82.4 7.5 146 44-208 3-155 (205)
181 KOG1802 RNA helicase nonsense 97.9 0.00017 3.6E-09 82.3 15.4 85 37-129 402-486 (935)
182 PRK10536 hypothetical protein; 97.9 0.00014 3E-09 76.2 13.0 142 41-205 55-209 (262)
183 PF13307 Helicase_C_2: Helicas 97.8 4.5E-05 9.7E-10 75.5 7.5 106 265-372 8-149 (167)
184 PF13872 AAA_34: P-loop contai 97.8 0.00024 5.2E-09 75.6 12.4 159 45-213 37-224 (303)
185 PF09848 DUF2075: Uncharacteri 97.8 7.4E-05 1.6E-09 83.0 8.9 108 62-195 3-117 (352)
186 PRK10875 recD exonuclease V su 97.7 0.00043 9.2E-09 81.8 14.4 142 46-206 153-299 (615)
187 TIGR01448 recD_rel helicase, p 97.7 0.00041 8.9E-09 83.9 13.8 130 40-208 319-452 (720)
188 PF12340 DUF3638: Protein of u 97.6 0.00063 1.4E-08 70.0 12.5 153 23-182 3-186 (229)
189 TIGR01447 recD exodeoxyribonuc 97.6 0.0006 1.3E-08 80.4 14.1 141 47-206 147-293 (586)
190 PF13245 AAA_19: Part of AAA d 97.6 0.00027 5.9E-09 60.4 7.8 60 53-113 2-62 (76)
191 KOG1803 DNA helicase [Replicat 97.5 0.00018 3.9E-09 81.8 7.6 64 45-113 185-249 (649)
192 KOG1001 Helicase-like transcri 97.5 0.00074 1.6E-08 80.2 13.2 100 268-367 541-642 (674)
193 KOG1132 Helicase of the DEAD s 97.4 0.00075 1.6E-08 79.7 11.0 134 45-181 21-260 (945)
194 PRK13889 conjugal transfer rel 97.4 0.0017 3.7E-08 80.3 14.3 127 40-208 342-470 (988)
195 TIGR02768 TraA_Ti Ti-type conj 97.3 0.0029 6.2E-08 77.0 15.1 135 30-206 338-474 (744)
196 TIGR02760 TraI_TIGR conjugativ 97.3 0.012 2.7E-07 78.2 21.0 210 45-288 429-648 (1960)
197 PRK14722 flhF flagellar biosyn 97.2 0.0046 9.9E-08 68.8 13.9 131 60-220 137-269 (374)
198 PRK12723 flagellar biosynthesi 97.2 0.0071 1.5E-07 67.8 15.4 130 61-220 175-309 (388)
199 PRK13826 Dtr system oriT relax 97.2 0.0048 1E-07 76.9 15.1 139 28-208 365-505 (1102)
200 PF13401 AAA_22: AAA domain; P 97.2 0.0013 2.8E-08 61.6 8.1 19 60-78 4-22 (131)
201 PF00580 UvrD-helicase: UvrD/R 96.9 0.0021 4.5E-08 69.5 7.8 124 46-178 1-125 (315)
202 PRK04296 thymidine kinase; Pro 96.9 0.0019 4.2E-08 65.3 6.8 109 61-208 3-114 (190)
203 PRK14974 cell division protein 96.8 0.013 2.8E-07 64.4 12.8 130 62-220 142-275 (336)
204 cd00009 AAA The AAA+ (ATPases 96.8 0.011 2.4E-07 55.3 10.7 18 60-77 19-36 (151)
205 PRK08181 transposase; Validate 96.8 0.021 4.5E-07 61.0 13.7 122 46-214 88-214 (269)
206 PRK06526 transposase; Provisio 96.7 0.0083 1.8E-07 63.5 9.9 112 55-213 93-205 (254)
207 PRK05703 flhF flagellar biosyn 96.7 0.062 1.4E-06 61.2 17.2 129 60-220 221-354 (424)
208 smart00382 AAA ATPases associa 96.6 0.0074 1.6E-07 55.9 7.8 42 60-106 2-43 (148)
209 COG1419 FlhF Flagellar GTP-bin 96.5 0.083 1.8E-06 58.7 16.1 130 60-219 203-334 (407)
210 COG1875 NYN ribonuclease and A 96.4 0.007 1.5E-07 65.6 6.9 144 41-206 224-385 (436)
211 PF00448 SRP54: SRP54-type pro 96.4 0.007 1.5E-07 61.6 6.6 124 63-215 4-131 (196)
212 PF05970 PIF1: PIF1-like helic 96.4 0.013 2.7E-07 65.6 9.2 60 45-109 1-66 (364)
213 PF14617 CMS1: U3-containing 9 96.4 0.0084 1.8E-07 62.9 7.2 87 91-179 124-212 (252)
214 PRK11889 flhF flagellar biosyn 96.4 0.041 8.9E-07 61.3 12.7 128 61-220 242-374 (436)
215 PF13871 Helicase_C_4: Helicas 96.3 0.0087 1.9E-07 63.6 7.2 67 307-373 52-127 (278)
216 PRK13709 conjugal transfer nic 96.3 0.027 5.9E-07 73.4 12.4 127 45-208 967-1099(1747)
217 smart00492 HELICc3 helicase su 96.3 0.03 6.6E-07 53.8 9.9 46 299-344 30-78 (141)
218 KOG1131 RNA polymerase II tran 96.2 0.024 5.2E-07 63.6 10.2 73 42-115 13-89 (755)
219 KOG1805 DNA replication helica 96.2 0.014 3.1E-07 69.9 8.9 125 44-182 668-810 (1100)
220 PRK07952 DNA replication prote 96.2 0.097 2.1E-06 55.1 13.9 50 166-215 160-211 (244)
221 PRK12727 flagellar biosynthesi 96.1 0.32 7E-06 56.3 18.9 128 59-219 349-480 (559)
222 PRK14712 conjugal transfer nic 96.1 0.032 7E-07 71.9 12.0 63 45-110 835-901 (1623)
223 PRK14723 flhF flagellar biosyn 96.1 0.073 1.6E-06 64.1 13.8 129 61-220 186-317 (767)
224 smart00491 HELICc2 helicase su 96.0 0.037 8E-07 53.3 9.0 69 304-372 32-138 (142)
225 cd01124 KaiC KaiC is a circadi 96.0 0.036 7.8E-07 55.3 9.3 49 63-117 2-50 (187)
226 PRK06921 hypothetical protein; 95.7 0.19 4.2E-06 53.6 14.1 44 60-108 117-160 (266)
227 PRK05642 DNA replication initi 95.7 0.062 1.3E-06 56.2 10.1 44 168-211 97-141 (234)
228 COG2805 PilT Tfp pilus assembl 95.7 0.055 1.2E-06 57.6 9.4 120 63-200 128-250 (353)
229 PRK08727 hypothetical protein; 95.7 0.07 1.5E-06 55.8 10.4 47 167-213 92-140 (233)
230 cd01120 RecA-like_NTPases RecA 95.7 0.086 1.9E-06 50.6 10.4 38 63-105 2-39 (165)
231 COG3973 Superfamily I DNA and 95.6 0.058 1.2E-06 62.0 10.0 91 26-117 185-284 (747)
232 cd01122 GP4d_helicase GP4d_hel 95.6 0.039 8.5E-07 58.8 8.5 64 34-101 4-67 (271)
233 KOG0298 DEAD box-containing he 95.6 0.03 6.6E-07 68.9 8.2 151 60-215 374-556 (1394)
234 PRK06731 flhF flagellar biosyn 95.5 0.37 8.1E-06 51.5 15.4 157 61-262 76-237 (270)
235 PRK11331 5-methylcytosine-spec 95.5 0.063 1.4E-06 60.9 9.9 34 45-78 179-212 (459)
236 PRK08116 hypothetical protein; 95.5 0.19 4E-06 53.8 13.0 111 61-215 115-227 (268)
237 PRK00149 dnaA chromosomal repl 95.5 0.081 1.8E-06 60.9 10.9 109 61-214 149-259 (450)
238 KOG0383 Predicted helicase [Ge 95.4 0.0019 4.2E-08 76.1 -2.6 79 250-329 615-696 (696)
239 PRK00771 signal recognition pa 95.4 0.13 2.8E-06 58.7 11.9 51 169-219 176-227 (437)
240 TIGR03420 DnaA_homol_Hda DnaA 95.4 0.083 1.8E-06 54.5 9.7 42 169-210 91-133 (226)
241 PRK06893 DNA replication initi 95.3 0.075 1.6E-06 55.4 8.9 46 167-212 90-137 (229)
242 PHA02533 17 large terminase pr 95.2 0.14 3.1E-06 59.9 11.8 147 45-208 59-209 (534)
243 COG3421 Uncharacterized protei 95.1 0.024 5.3E-07 64.7 4.8 143 65-212 2-168 (812)
244 KOG0989 Replication factor C, 95.1 0.044 9.6E-07 58.3 6.5 45 164-209 125-169 (346)
245 PRK06835 DNA replication prote 95.1 0.39 8.4E-06 52.9 14.1 111 60-215 183-295 (329)
246 PRK14721 flhF flagellar biosyn 95.0 0.34 7.4E-06 54.9 13.5 160 60-262 191-352 (420)
247 TIGR02760 TraI_TIGR conjugativ 95.0 0.098 2.1E-06 70.0 10.7 61 45-109 1019-1084(1960)
248 TIGR00362 DnaA chromosomal rep 95.0 0.13 2.9E-06 58.2 10.5 109 61-214 137-247 (405)
249 PF05876 Terminase_GpA: Phage 94.9 0.037 8E-07 65.2 6.0 126 44-181 15-147 (557)
250 TIGR01425 SRP54_euk signal rec 94.9 0.16 3.5E-06 57.5 10.8 130 62-219 102-234 (429)
251 PRK14087 dnaA chromosomal repl 94.9 0.23 4.9E-06 57.2 12.2 110 61-213 142-253 (450)
252 PRK05580 primosome assembly pr 94.9 0.15 3.3E-06 61.6 11.3 94 248-342 172-266 (679)
253 PRK12377 putative replication 94.8 0.37 8E-06 50.9 12.7 107 61-213 102-210 (248)
254 PRK11054 helD DNA helicase IV; 94.8 0.1 2.2E-06 62.9 9.6 70 44-116 195-264 (684)
255 PRK08084 DNA replication initi 94.8 0.16 3.4E-06 53.2 9.9 43 169-211 98-142 (235)
256 TIGR03015 pepcterm_ATPase puta 94.8 0.3 6.5E-06 51.7 12.2 34 45-78 23-61 (269)
257 PRK09183 transposase/IS protei 94.8 0.24 5.2E-06 52.7 11.3 46 57-108 99-144 (259)
258 PRK12726 flagellar biosynthesi 94.8 0.62 1.3E-05 51.9 14.6 128 60-219 206-338 (407)
259 PRK07003 DNA polymerase III su 94.8 0.14 3.1E-06 61.2 10.2 40 167-208 118-157 (830)
260 cd00561 CobA_CobO_BtuR ATP:cor 94.7 0.38 8.2E-06 47.2 11.5 131 63-219 5-148 (159)
261 PRK05707 DNA polymerase III su 94.7 0.17 3.8E-06 55.6 10.2 35 45-79 3-41 (328)
262 CHL00181 cbbX CbbX; Provisiona 94.7 0.34 7.4E-06 52.3 12.2 19 61-79 60-78 (287)
263 TIGR01547 phage_term_2 phage t 94.6 0.099 2.1E-06 59.1 8.4 136 62-212 3-143 (396)
264 PHA02544 44 clamp loader, smal 94.6 0.14 2.9E-06 55.9 9.2 39 168-206 100-138 (316)
265 PF00004 AAA: ATPase family as 94.5 0.04 8.6E-07 51.2 4.1 16 169-184 59-74 (132)
266 TIGR00595 priA primosomal prot 94.5 0.17 3.6E-06 59.1 10.0 92 249-341 8-100 (505)
267 PRK08903 DnaA regulatory inact 94.5 0.19 4.2E-06 52.0 9.5 43 168-211 90-133 (227)
268 COG1484 DnaC DNA replication p 94.5 0.19 4.1E-06 53.3 9.5 67 42-114 80-153 (254)
269 PRK05973 replicative DNA helic 94.5 0.19 4.2E-06 52.5 9.4 84 27-117 22-115 (237)
270 PRK10867 signal recognition pa 94.5 0.17 3.6E-06 57.7 9.6 131 63-220 103-236 (433)
271 PRK10919 ATP-dependent DNA hel 94.5 0.078 1.7E-06 64.1 7.3 69 45-116 2-70 (672)
272 TIGR02881 spore_V_K stage V sp 94.5 0.27 5.8E-06 52.3 10.7 18 61-78 43-60 (261)
273 PRK12422 chromosomal replicati 94.4 0.2 4.4E-06 57.4 10.3 49 167-215 201-251 (445)
274 COG2256 MGS1 ATPase related to 94.4 0.074 1.6E-06 58.7 6.3 35 170-209 106-140 (436)
275 PRK10917 ATP-dependent DNA hel 94.4 0.14 3E-06 62.1 9.4 79 262-340 306-389 (681)
276 PRK08769 DNA polymerase III su 94.4 0.26 5.7E-06 53.9 10.5 144 43-209 2-153 (319)
277 PF05127 Helicase_RecD: Helica 94.3 0.031 6.6E-07 55.7 2.9 123 64-209 1-123 (177)
278 PRK08533 flagellar accessory p 94.3 0.32 7E-06 50.7 10.7 53 59-117 23-75 (230)
279 PRK12724 flagellar biosynthesi 94.3 0.36 7.8E-06 54.5 11.5 125 62-220 225-356 (432)
280 TIGR03499 FlhF flagellar biosy 94.2 0.21 4.7E-06 53.7 9.4 18 61-78 195-212 (282)
281 PRK06995 flhF flagellar biosyn 94.2 0.19 4.2E-06 57.8 9.4 21 61-81 257-277 (484)
282 PLN03025 replication factor C 94.2 0.43 9.3E-06 52.3 11.9 39 168-208 99-137 (319)
283 PRK07994 DNA polymerase III su 94.1 0.36 7.8E-06 57.6 11.7 37 167-204 118-154 (647)
284 PRK07764 DNA polymerase III su 94.1 0.24 5.2E-06 60.8 10.6 43 167-211 119-161 (824)
285 PRK14960 DNA polymerase III su 94.1 0.28 6.1E-06 58.1 10.6 42 167-210 117-158 (702)
286 PRK12402 replication factor C 94.1 0.31 6.7E-06 53.5 10.6 39 167-206 124-162 (337)
287 PRK14088 dnaA chromosomal repl 94.1 0.54 1.2E-05 53.9 12.8 49 168-216 194-244 (440)
288 PRK13342 recombination factor 94.0 0.18 4E-06 57.3 8.9 37 168-209 92-128 (413)
289 PTZ00112 origin recognition co 93.9 0.7 1.5E-05 56.2 13.5 41 167-208 868-909 (1164)
290 TIGR00064 ftsY signal recognit 93.9 0.45 9.7E-06 51.0 11.0 131 61-220 73-213 (272)
291 TIGR03877 thermo_KaiC_1 KaiC d 93.9 0.22 4.8E-06 52.1 8.6 52 60-117 21-72 (237)
292 TIGR00959 ffh signal recogniti 93.9 0.52 1.1E-05 53.7 12.1 131 62-220 101-235 (428)
293 PF00308 Bac_DnaA: Bacterial d 93.9 0.3 6.5E-06 50.6 9.4 107 62-213 36-144 (219)
294 PF05729 NACHT: NACHT domain 93.9 0.37 7.9E-06 46.5 9.6 45 62-107 2-47 (166)
295 KOG0742 AAA+-type ATPase [Post 93.8 0.14 3.1E-06 56.3 6.9 131 21-209 350-493 (630)
296 PF13177 DNA_pol3_delta2: DNA 93.8 0.34 7.4E-06 47.6 9.2 44 167-211 101-144 (162)
297 KOG0738 AAA+-type ATPase [Post 93.8 0.067 1.5E-06 58.6 4.4 58 19-76 179-261 (491)
298 COG1444 Predicted P-loop ATPas 93.8 0.28 6E-06 58.9 9.8 150 35-210 204-357 (758)
299 PRK14956 DNA polymerase III su 93.8 0.24 5.2E-06 56.8 9.0 19 63-81 43-61 (484)
300 PRK14949 DNA polymerase III su 93.8 0.72 1.6E-05 56.5 13.4 43 167-211 118-160 (944)
301 TIGR01074 rep ATP-dependent DN 93.8 0.14 3.1E-06 61.9 7.8 90 46-159 2-91 (664)
302 PF06745 KaiC: KaiC; InterPro 93.7 0.17 3.6E-06 52.4 7.1 131 60-209 19-160 (226)
303 TIGR01073 pcrA ATP-dependent D 93.7 0.15 3.2E-06 62.4 7.8 110 44-179 3-114 (726)
304 TIGR01075 uvrD DNA helicase II 93.7 0.13 2.9E-06 62.7 7.3 71 44-117 3-73 (715)
305 cd00984 DnaB_C DnaB helicase C 93.6 0.43 9.3E-06 49.8 10.2 47 59-109 12-61 (242)
306 COG4962 CpaF Flp pilus assembl 93.6 0.14 3.1E-06 55.6 6.6 78 25-108 137-215 (355)
307 COG1474 CDC6 Cdc6-related prot 93.6 0.42 9.2E-06 53.4 10.6 27 61-88 43-69 (366)
308 PRK00411 cdc6 cell division co 93.6 0.41 8.8E-06 53.9 10.6 25 61-86 56-80 (394)
309 TIGR02880 cbbX_cfxQ probable R 93.5 0.74 1.6E-05 49.6 12.0 18 61-78 59-76 (284)
310 TIGR00708 cobA cob(I)alamin ad 93.5 0.5 1.1E-05 46.9 9.7 55 165-219 94-150 (173)
311 PF03354 Terminase_1: Phage Te 93.5 0.23 4.9E-06 57.7 8.5 71 48-119 1-80 (477)
312 PRK12323 DNA polymerase III su 93.5 0.37 7.9E-06 57.1 10.0 41 166-207 122-162 (700)
313 PRK11773 uvrD DNA-dependent he 93.4 0.17 3.6E-06 61.9 7.7 70 45-117 9-78 (721)
314 PRK06904 replicative DNA helic 93.4 0.75 1.6E-05 53.3 12.5 118 57-182 218-348 (472)
315 TIGR00643 recG ATP-dependent D 93.4 0.24 5.3E-06 59.5 8.8 78 263-340 281-363 (630)
316 PRK05986 cob(I)alamin adenolsy 93.4 0.8 1.7E-05 46.2 11.0 141 58-219 20-168 (191)
317 PRK14086 dnaA chromosomal repl 93.4 0.51 1.1E-05 55.8 11.0 48 167-214 376-425 (617)
318 KOG0991 Replication factor C, 93.3 0.17 3.7E-06 51.9 6.1 44 164-208 109-152 (333)
319 PRK14958 DNA polymerase III su 93.3 0.5 1.1E-05 55.2 10.9 39 167-206 118-156 (509)
320 PRK14961 DNA polymerase III su 93.3 0.51 1.1E-05 52.7 10.6 38 167-205 118-155 (363)
321 PRK14873 primosome assembly pr 93.3 0.45 9.8E-06 57.2 10.7 94 248-342 170-265 (665)
322 TIGR02785 addA_Gpos recombinat 93.2 0.26 5.7E-06 63.7 9.2 124 45-179 1-126 (1232)
323 TIGR02928 orc1/cdc6 family rep 93.1 1.2 2.7E-05 49.4 13.4 25 61-86 41-65 (365)
324 PF07728 AAA_5: AAA domain (dy 93.0 0.036 7.8E-07 52.6 0.8 15 62-76 1-15 (139)
325 PRK13894 conjugal transfer ATP 93.0 0.27 5.9E-06 53.8 7.7 67 35-106 124-191 (319)
326 PRK08691 DNA polymerase III su 93.0 0.46 1E-05 56.8 10.0 40 166-206 117-156 (709)
327 COG0470 HolB ATPase involved i 93.0 0.28 6.1E-06 53.3 7.9 39 167-206 108-146 (325)
328 PRK14964 DNA polymerase III su 92.9 0.8 1.7E-05 53.0 11.6 44 166-211 114-157 (491)
329 KOG2028 ATPase related to the 92.9 0.23 4.9E-06 54.1 6.6 105 62-219 164-268 (554)
330 PF05496 RuvB_N: Holliday junc 92.9 0.32 6.9E-06 50.2 7.4 17 62-78 52-68 (233)
331 PF13173 AAA_14: AAA domain 92.9 0.7 1.5E-05 43.3 9.3 37 168-207 61-97 (128)
332 PRK13833 conjugal transfer pro 92.8 0.34 7.5E-06 53.0 8.1 65 37-106 122-187 (323)
333 PRK09111 DNA polymerase III su 92.8 0.59 1.3E-05 55.5 10.7 40 166-206 130-169 (598)
334 PRK04195 replication factor C 92.8 0.75 1.6E-05 53.5 11.4 19 60-78 39-57 (482)
335 TIGR00580 mfd transcription-re 92.7 0.38 8.3E-06 59.9 9.3 91 250-340 484-579 (926)
336 PRK13341 recombination factor 92.7 0.4 8.6E-06 58.2 9.2 41 168-213 109-149 (725)
337 COG1435 Tdk Thymidine kinase [ 92.7 0.29 6.3E-06 49.2 6.7 92 60-181 4-95 (201)
338 PRK08939 primosomal protein Dn 92.6 1.1 2.3E-05 48.9 11.6 51 166-216 215-268 (306)
339 TIGR03600 phage_DnaB phage rep 92.6 0.8 1.7E-05 52.2 11.1 56 42-101 176-231 (421)
340 PRK09112 DNA polymerase III su 92.5 0.63 1.4E-05 51.7 9.9 41 166-207 139-179 (351)
341 PHA03333 putative ATPase subun 92.5 2.7 5.8E-05 50.1 15.2 147 47-209 171-332 (752)
342 cd03115 SRP The signal recogni 92.5 3 6.5E-05 41.0 13.8 54 167-220 81-135 (173)
343 PRK10436 hypothetical protein; 92.4 0.32 7E-06 55.9 7.5 39 47-86 203-243 (462)
344 PRK14955 DNA polymerase III su 92.4 0.75 1.6E-05 52.1 10.5 19 63-81 41-59 (397)
345 PF03796 DnaB_C: DnaB-like hel 92.3 0.66 1.4E-05 49.1 9.4 138 60-208 19-179 (259)
346 PTZ00293 thymidine kinase; Pro 92.3 0.82 1.8E-05 46.9 9.5 39 60-103 4-42 (211)
347 PRK14965 DNA polymerase III su 92.3 0.52 1.1E-05 56.0 9.3 44 166-211 117-160 (576)
348 PRK11034 clpA ATP-dependent Cl 92.2 1.1 2.4E-05 54.7 12.2 45 169-213 279-327 (758)
349 KOG1513 Nuclear helicase MOP-3 92.2 0.15 3.3E-06 60.0 4.6 168 45-221 264-469 (1300)
350 PRK14952 DNA polymerase III su 92.2 1 2.2E-05 53.5 11.4 44 166-211 116-159 (584)
351 TIGR03881 KaiC_arch_4 KaiC dom 92.1 1.2 2.7E-05 46.0 11.0 52 59-116 19-70 (229)
352 COG2804 PulE Type II secretory 92.1 0.46 1E-05 54.3 8.1 40 47-87 243-284 (500)
353 TIGR00678 holB DNA polymerase 92.1 0.8 1.7E-05 45.9 9.2 41 166-208 94-134 (188)
354 COG1198 PriA Primosomal protei 92.0 0.44 9.6E-06 57.4 8.3 95 244-339 223-318 (730)
355 PRK14969 DNA polymerase III su 92.0 0.84 1.8E-05 53.6 10.5 40 166-206 117-156 (527)
356 KOG0732 AAA+-type ATPase conta 92.0 0.24 5.2E-06 61.1 6.0 144 21-209 260-414 (1080)
357 PRK14957 DNA polymerase III su 91.9 1.9 4.1E-05 50.7 13.1 40 166-206 117-156 (546)
358 PRK14950 DNA polymerase III su 91.8 1.3 2.8E-05 52.9 11.9 18 63-80 41-58 (585)
359 PRK11823 DNA repair protein Ra 91.8 0.69 1.5E-05 53.2 9.3 59 53-117 68-131 (446)
360 PRK14962 DNA polymerase III su 91.7 1.5 3.3E-05 50.7 12.0 18 63-80 39-56 (472)
361 PRK14951 DNA polymerase III su 91.7 0.81 1.8E-05 54.5 9.9 43 167-211 123-165 (618)
362 TIGR02782 TrbB_P P-type conjug 91.5 0.78 1.7E-05 49.8 9.0 67 35-106 108-175 (299)
363 PTZ00454 26S protease regulato 91.5 0.41 9E-06 54.1 7.0 54 21-77 140-196 (398)
364 TIGR03689 pup_AAA proteasome A 91.5 0.5 1.1E-05 54.9 7.8 17 60-76 216-232 (512)
365 PRK10416 signal recognition pa 91.4 1.9 4.1E-05 47.3 11.8 54 167-220 195-255 (318)
366 PRK05563 DNA polymerase III su 91.4 1.2 2.6E-05 52.7 11.0 20 62-81 40-59 (559)
367 COG0593 DnaA ATPase involved i 91.4 0.83 1.8E-05 51.4 9.1 47 168-214 175-223 (408)
368 PRK06964 DNA polymerase III su 91.4 1.1 2.3E-05 49.6 9.9 40 47-87 3-47 (342)
369 PRK06067 flagellar accessory p 91.3 1.8 4E-05 45.0 11.3 52 60-117 25-76 (234)
370 TIGR03878 thermo_KaiC_2 KaiC d 91.2 1.4 3E-05 46.8 10.4 37 60-101 36-72 (259)
371 TIGR00665 DnaB replicative DNA 91.2 1.3 2.8E-05 50.8 10.8 113 59-181 194-318 (434)
372 cd01121 Sms Sms (bacterial rad 91.2 1.2 2.6E-05 49.9 10.2 59 53-117 70-133 (372)
373 PRK07471 DNA polymerase III su 91.1 0.7 1.5E-05 51.6 8.3 43 166-209 139-181 (365)
374 PRK14959 DNA polymerase III su 91.1 0.58 1.3E-05 55.5 7.8 20 62-81 40-59 (624)
375 PRK06645 DNA polymerase III su 91.1 0.98 2.1E-05 52.6 9.6 20 62-81 45-64 (507)
376 PRK04328 hypothetical protein; 91.0 1.4 3.1E-05 46.5 10.1 52 60-117 23-74 (249)
377 COG1200 RecG RecG-like helicas 91.0 0.77 1.7E-05 54.1 8.5 164 251-423 297-480 (677)
378 TIGR02639 ClpA ATP-dependent C 90.9 2 4.4E-05 52.6 12.7 43 170-212 276-322 (731)
379 PRK08699 DNA polymerase III su 90.9 1.6 3.6E-05 47.9 10.8 33 47-79 3-40 (325)
380 PRK08840 replicative DNA helic 90.8 2.2 4.8E-05 49.3 12.1 132 42-181 199-342 (464)
381 PRK07940 DNA polymerase III su 90.7 1.7 3.6E-05 49.1 10.8 44 167-212 116-159 (394)
382 PF01443 Viral_helicase1: Vira 90.7 0.24 5.3E-06 51.2 3.9 15 63-77 1-15 (234)
383 PRK05748 replicative DNA helic 90.5 1.6 3.6E-05 50.1 10.8 113 59-181 202-327 (448)
384 PRK07004 replicative DNA helic 90.4 1.1 2.4E-05 51.7 9.3 111 59-181 212-337 (460)
385 COG0552 FtsY Signal recognitio 90.4 1.7 3.6E-05 47.4 9.9 128 63-219 142-279 (340)
386 PRK10689 transcription-repair 90.4 0.92 2E-05 58.0 9.3 78 263-340 646-728 (1147)
387 COG2909 MalT ATP-dependent tra 90.4 0.59 1.3E-05 56.2 7.0 43 169-211 130-172 (894)
388 PRK14954 DNA polymerase III su 90.3 1.1 2.5E-05 53.4 9.4 40 166-206 125-164 (620)
389 PF03969 AFG1_ATPase: AFG1-lik 90.2 3.3 7.1E-05 46.3 12.5 110 60-213 62-172 (362)
390 PRK08006 replicative DNA helic 90.2 2.6 5.7E-05 48.7 12.1 115 59-181 223-349 (471)
391 PRK10865 protein disaggregatio 90.1 1.1 2.4E-05 55.8 9.6 44 170-213 273-319 (857)
392 PRK05896 DNA polymerase III su 90.1 0.59 1.3E-05 55.2 6.8 20 62-81 40-59 (605)
393 COG1618 Predicted nucleotide k 90.0 0.24 5.2E-06 48.2 2.9 116 62-195 7-129 (179)
394 PHA00729 NTP-binding motif con 90.0 2.8 6.1E-05 43.5 10.9 75 144-219 59-138 (226)
395 PRK14963 DNA polymerase III su 90.0 1.7 3.6E-05 50.8 10.3 17 63-79 39-55 (504)
396 TIGR01243 CDC48 AAA family ATP 90.0 0.44 9.6E-06 58.4 5.9 18 61-78 488-505 (733)
397 TIGR03346 chaperone_ClpB ATP-d 90.0 2.8 6E-05 52.3 12.9 46 169-214 267-315 (852)
398 KOG0739 AAA+-type ATPase [Post 89.9 2.7 5.8E-05 44.9 10.6 125 54-227 155-296 (439)
399 PRK04841 transcriptional regul 89.9 1.6 3.5E-05 54.6 11.0 44 168-211 121-164 (903)
400 KOG2543 Origin recognition com 89.9 2.9 6.3E-05 46.2 11.2 139 45-212 9-161 (438)
401 COG0513 SrmB Superfamily II DN 89.7 1.4 3E-05 51.7 9.5 67 269-339 102-179 (513)
402 PRK14948 DNA polymerase III su 89.6 1.6 3.5E-05 52.2 10.1 19 62-80 40-58 (620)
403 PRK00440 rfc replication facto 89.6 3.6 7.9E-05 44.6 12.2 38 168-206 102-139 (319)
404 KOG0733 Nuclear AAA ATPase (VC 89.6 1.1 2.3E-05 52.2 8.0 47 166-212 602-658 (802)
405 PRK03992 proteasome-activating 89.5 0.7 1.5E-05 52.1 6.6 17 61-77 166-182 (389)
406 PF14516 AAA_35: AAA-like doma 89.4 3.3 7.1E-05 45.7 11.7 128 48-195 18-155 (331)
407 TIGR02524 dot_icm_DotB Dot/Icm 89.4 0.58 1.3E-05 52.1 5.8 44 59-104 133-176 (358)
408 PRK08506 replicative DNA helic 89.2 2.1 4.5E-05 49.7 10.3 113 59-181 191-315 (472)
409 TIGR03345 VI_ClpV1 type VI sec 89.1 2.8 6E-05 52.2 11.9 33 45-77 187-225 (852)
410 TIGR02538 type_IV_pilB type IV 89.1 1.1 2.5E-05 53.0 8.2 44 38-85 295-340 (564)
411 PRK14971 DNA polymerase III su 89.1 2.5 5.4E-05 50.6 11.1 41 166-208 119-159 (614)
412 PF06733 DEAD_2: DEAD_2; Inte 89.0 0.26 5.6E-06 48.9 2.4 45 138-182 114-159 (174)
413 COG3972 Superfamily I DNA and 88.9 0.98 2.1E-05 51.2 6.9 142 33-181 151-308 (660)
414 KOG1133 Helicase of the DEAD s 88.9 15 0.00033 43.5 16.7 125 247-373 609-780 (821)
415 PRK06305 DNA polymerase III su 88.8 1.9 4.2E-05 49.6 9.6 37 167-204 120-156 (451)
416 PF02572 CobA_CobO_BtuR: ATP:c 88.8 2.5 5.5E-05 42.0 9.2 140 63-219 6-149 (172)
417 TIGR01243 CDC48 AAA family ATP 88.7 1.6 3.5E-05 53.5 9.4 52 22-76 174-228 (733)
418 PRK13764 ATPase; Provisional 88.7 0.71 1.5E-05 54.6 6.0 42 59-105 256-297 (602)
419 cd01129 PulE-GspE PulE/GspE Th 88.6 1.1 2.3E-05 47.9 7.0 61 37-105 58-120 (264)
420 KOG0741 AAA+-type ATPase [Post 88.5 3.3 7.1E-05 47.6 10.7 52 27-78 493-556 (744)
421 TIGR03880 KaiC_arch_3 KaiC dom 88.5 2.7 5.8E-05 43.4 9.7 52 60-117 16-67 (224)
422 KOG1513 Nuclear helicase MOP-3 88.5 0.43 9.4E-06 56.4 3.9 64 309-372 850-922 (1300)
423 PF02456 Adeno_IVa2: Adenoviru 88.4 0.8 1.7E-05 49.1 5.6 38 63-105 90-129 (369)
424 TIGR02525 plasmid_TraJ plasmid 88.4 1 2.3E-05 50.3 6.9 43 60-105 149-191 (372)
425 PRK06321 replicative DNA helic 88.3 4.1 9E-05 47.2 11.9 112 60-181 226-349 (472)
426 PRK13851 type IV secretion sys 88.3 0.65 1.4E-05 51.4 5.2 44 57-106 159-202 (344)
427 PRK09087 hypothetical protein; 88.3 1.4 3.1E-05 45.8 7.5 41 170-212 89-130 (226)
428 PRK13900 type IV secretion sys 88.2 1.3 2.7E-05 49.0 7.3 44 58-107 158-201 (332)
429 cd01126 TraG_VirD4 The TraG/Tr 88.1 0.35 7.5E-06 54.5 3.0 48 62-116 1-48 (384)
430 PRK08760 replicative DNA helic 88.1 2.5 5.3E-05 49.1 10.0 112 60-181 229-352 (476)
431 PF02534 T4SS-DNA_transf: Type 88.1 0.47 1E-05 54.8 4.1 50 61-117 45-94 (469)
432 TIGR02655 circ_KaiC circadian 88.1 1.8 3.9E-05 50.4 8.9 60 52-117 250-314 (484)
433 PRK08451 DNA polymerase III su 88.1 3.4 7.3E-05 48.5 11.0 40 166-206 115-154 (535)
434 COG4626 Phage terminase-like p 88.0 2.9 6.3E-05 48.4 10.2 145 45-207 61-223 (546)
435 COG3267 ExeA Type II secretory 88.0 1.8 3.9E-05 45.3 7.8 84 24-117 15-104 (269)
436 TIGR02533 type_II_gspE general 88.0 1.6 3.5E-05 50.7 8.3 44 38-85 221-266 (486)
437 COG2874 FlaH Predicted ATPases 87.9 6.8 0.00015 40.2 11.5 127 61-209 29-167 (235)
438 PF05707 Zot: Zonular occluden 87.8 1.3 2.8E-05 44.8 6.6 24 63-86 3-27 (193)
439 PF01695 IstB_IS21: IstB-like 87.8 1.3 2.8E-05 44.3 6.5 45 59-109 46-90 (178)
440 KOG1133 Helicase of the DEAD s 87.8 0.83 1.8E-05 53.6 5.6 43 45-87 15-61 (821)
441 cd01128 rho_factor Transcripti 87.6 2.1 4.5E-05 45.3 8.2 20 57-76 13-32 (249)
442 PHA03368 DNA packaging termina 87.6 3 6.5E-05 49.5 10.1 133 60-210 254-391 (738)
443 CHL00176 ftsH cell division pr 87.5 1.4 3E-05 52.9 7.7 17 61-77 217-233 (638)
444 COG4098 comFA Superfamily II D 87.4 2.5 5.3E-05 46.0 8.5 94 91-196 303-398 (441)
445 PRK05636 replicative DNA helic 87.4 2.6 5.7E-05 49.2 9.7 109 61-181 266-388 (505)
446 PRK05595 replicative DNA helic 87.4 1.2 2.7E-05 51.1 7.0 39 60-102 201-239 (444)
447 cd03221 ABCF_EF-3 ABCF_EF-3 E 87.4 2.8 6E-05 40.2 8.4 45 166-213 86-130 (144)
448 PF03237 Terminase_6: Terminas 87.4 5.8 0.00013 43.4 12.2 144 64-223 1-153 (384)
449 PF01637 Arch_ATPase: Archaeal 87.4 1.5 3.2E-05 44.7 6.9 41 170-210 120-166 (234)
450 COG1222 RPT1 ATP-dependent 26S 87.2 1.9 4.1E-05 47.3 7.6 17 61-77 186-202 (406)
451 PRK13695 putative NTPase; Prov 87.2 4.8 0.0001 39.7 10.2 17 62-78 2-18 (174)
452 COG1132 MdlB ABC-type multidru 87.1 1.3 2.8E-05 52.6 7.2 41 166-206 481-521 (567)
453 cd01130 VirB11-like_ATPase Typ 87.1 1.5 3.3E-05 43.9 6.7 38 38-77 4-42 (186)
454 PF05621 TniB: Bacterial TniB 87.0 1.5 3.2E-05 47.4 6.7 40 168-208 145-188 (302)
455 TIGR02237 recomb_radB DNA repa 87.0 3.2 6.9E-05 42.2 9.1 38 60-102 12-49 (209)
456 cd01125 repA Hexameric Replica 86.9 8.2 0.00018 40.3 12.3 55 62-116 3-67 (239)
457 PRK06871 DNA polymerase III su 86.8 3.5 7.5E-05 45.4 9.7 42 166-208 105-146 (325)
458 PRK13897 type IV secretion sys 86.6 0.65 1.4E-05 55.2 4.1 50 61-117 159-208 (606)
459 TIGR01420 pilT_fam pilus retra 86.4 1.4 3.1E-05 48.8 6.5 43 60-106 122-164 (343)
460 PF00437 T2SE: Type II/IV secr 86.3 2 4.3E-05 45.7 7.4 44 58-106 125-168 (270)
461 PF00265 TK: Thymidine kinase; 86.3 0.49 1.1E-05 47.3 2.5 37 62-103 3-39 (176)
462 TIGR02397 dnaX_nterm DNA polym 86.3 4.6 9.9E-05 44.6 10.6 17 62-78 38-54 (355)
463 TIGR01650 PD_CobS cobaltochela 86.3 5.8 0.00013 43.5 10.9 25 53-77 57-81 (327)
464 PRK14953 DNA polymerase III su 86.2 5.9 0.00013 46.1 11.6 41 166-208 117-157 (486)
465 PRK11776 ATP-dependent RNA hel 86.2 2.3 4.9E-05 49.1 8.3 70 267-340 73-153 (460)
466 TIGR00631 uvrb excinuclease AB 86.1 9.2 0.0002 46.2 13.6 112 92-214 441-558 (655)
467 TIGR02858 spore_III_AA stage I 86.1 4.2 9.2E-05 43.5 9.6 25 52-76 100-127 (270)
468 TIGR00763 lon ATP-dependent pr 86.0 2.4 5.3E-05 52.3 8.9 19 60-78 347-365 (775)
469 PRK06090 DNA polymerase III su 85.9 5.6 0.00012 43.6 10.7 42 166-208 106-147 (319)
470 PHA00350 putative assembly pro 85.9 1.8 3.8E-05 48.8 6.9 25 63-87 4-29 (399)
471 cd01394 radB RadB. The archaea 85.9 5.1 0.00011 41.0 9.9 36 60-100 19-54 (218)
472 COG1110 Reverse gyrase [DNA re 85.8 2.7 5.8E-05 51.7 8.6 67 265-331 124-197 (1187)
473 TIGR02868 CydC thiol reductant 85.7 1.1 2.3E-05 52.7 5.5 41 166-206 486-526 (529)
474 PRK04537 ATP-dependent RNA hel 85.7 4.2 9.2E-05 48.3 10.4 74 92-176 256-333 (572)
475 KOG0701 dsRNA-specific nucleas 85.5 0.56 1.2E-05 60.5 3.0 94 268-361 294-399 (1606)
476 COG0541 Ffh Signal recognition 85.5 3.8 8.3E-05 46.1 9.1 130 63-220 103-235 (451)
477 TIGR01242 26Sp45 26S proteasom 85.4 1.5 3.3E-05 48.9 6.2 17 61-77 157-173 (364)
478 KOG0729 26S proteasome regulat 85.4 3.2 7E-05 43.6 7.9 18 61-78 212-229 (435)
479 PHA00012 I assembly protein 85.3 10 0.00023 41.4 12.0 25 63-87 4-28 (361)
480 CHL00095 clpC Clp protease ATP 85.3 4.4 9.6E-05 50.4 10.7 18 61-78 201-218 (821)
481 PRK09165 replicative DNA helic 85.3 5.5 0.00012 46.5 10.9 116 61-181 218-354 (497)
482 KOG0344 ATP-dependent RNA heli 85.0 12 0.00026 43.5 12.9 100 66-178 363-466 (593)
483 cd00983 recA RecA is a bacter 85.0 3.2 6.9E-05 45.6 8.2 51 53-108 42-98 (325)
484 TIGR00416 sms DNA repair prote 84.7 3.9 8.5E-05 47.1 9.2 59 53-117 82-145 (454)
485 PRK06647 DNA polymerase III su 84.6 5.1 0.00011 47.5 10.3 17 63-79 41-57 (563)
486 PRK09435 membrane ATPase/prote 84.6 17 0.00037 40.1 13.7 14 63-76 59-72 (332)
487 PF04364 DNA_pol3_chi: DNA pol 84.5 2.2 4.7E-05 40.8 5.9 113 241-375 4-116 (137)
488 PF03266 NTPase_1: NTPase; In 84.5 0.36 7.8E-06 47.8 0.6 117 62-194 1-123 (168)
489 PRK11634 ATP-dependent RNA hel 84.5 3.3 7.1E-05 49.8 8.7 71 266-340 74-155 (629)
490 PF03668 ATP_bind_2: P-loop AT 84.4 12 0.00025 40.2 11.8 27 275-301 256-282 (284)
491 PLN00020 ribulose bisphosphate 84.4 2.1 4.5E-05 47.6 6.3 16 62-77 150-165 (413)
492 PRK07399 DNA polymerase III su 84.3 5 0.00011 43.9 9.4 41 166-208 122-162 (314)
493 COG2109 BtuR ATP:corrinoid ade 84.3 4.8 0.0001 40.4 8.2 54 166-219 120-175 (198)
494 TIGR01241 FtsH_fam ATP-depende 84.3 1.7 3.6E-05 50.8 6.1 17 61-77 89-105 (495)
495 KOG0331 ATP-dependent RNA heli 84.1 3.7 8E-05 47.6 8.5 73 91-174 339-415 (519)
496 PRK09354 recA recombinase A; P 84.0 6.4 0.00014 43.6 10.0 50 53-107 47-102 (349)
497 cd03289 ABCC_CFTR2 The CFTR su 83.9 1.6 3.6E-05 46.8 5.4 42 166-208 154-195 (275)
498 PRK00080 ruvB Holliday junctio 83.9 2.4 5.2E-05 46.6 6.8 18 61-78 52-69 (328)
499 PRK05416 glmZ(sRNA)-inactivati 83.8 25 0.00054 38.0 14.3 26 275-301 259-284 (288)
500 PRK07133 DNA polymerase III su 83.7 4.6 0.0001 48.9 9.4 44 166-211 116-159 (725)
No 1
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-96 Score=773.36 Aligned_cols=508 Identities=58% Similarity=0.870 Sum_probs=480.9
Q ss_pred hHHHHhhccCCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC
Q 003924 11 KRREKQKKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP 90 (786)
Q Consensus 11 ~~~~~~~~~~~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~ 90 (786)
++.++++|++++|+|++|||+..++++|.+.||.+|||+|+++||.||+++|++.+|.||||||+||++||+++|+.++
T Consensus 9 ~~~~~~~k~kg~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s- 87 (529)
T KOG0337|consen 9 THREKGKKKKGSGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS- 87 (529)
T ss_pred hhHHhcCccCCCCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-
Confidence 4677777778889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCcee
Q 003924 91 QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (786)
Q Consensus 91 ~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~ 170 (786)
..|.++||++||++||.|+.++++++++++++++++++||++.+++|..+..+||||++|||+++|+..++ .+.++.++
T Consensus 88 ~~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem-~l~l~sve 166 (529)
T KOG0337|consen 88 QTGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEM-TLTLSSVE 166 (529)
T ss_pred ccccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhe-ecccccee
Confidence 77999999999999999999999999999999999999999999999999999999999999999999997 59999999
Q ss_pred eEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHH
Q 003924 171 YVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250 (786)
Q Consensus 171 ~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~ 250 (786)
||||||||++++|||.+++.+++..+|.++|+++||||+|..+++|+++++.+|.+++++.+..+++.++..|+.+++.+
T Consensus 167 yVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~ 246 (529)
T KOG0337|consen 167 YVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAE 246 (529)
T ss_pred eeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeccccccc
Q 003924 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (786)
Q Consensus 251 k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGl 330 (786)
|..+|++++...+. ..+++|||+|++||+++..+|...|+.+..+||+|++.+|...+.+|+.++..+||+||+++||+
T Consensus 247 K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~ 325 (529)
T KOG0337|consen 247 KEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGL 325 (529)
T ss_pred HHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccC
Confidence 99999999998764 67899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCCCHHHHHhhhhhHHHHHH
Q 003924 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKID 410 (786)
Q Consensus 331 DIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~e~~~~~~~~~~~~i~ 410 (786)
|||.+++|||||+|.+++.|+||+||++|+|+.|++|+||.++|.+|+.||+.|+++++...+...+...
T Consensus 326 diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~~~~e~d~---------- 395 (529)
T KOG0337|consen 326 DIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAISHFEYDC---------- 395 (529)
T ss_pred CCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeeccchhhhcc----------
Confidence 9999999999999999999999999999999999999999999999999999999999988776543221
Q ss_pred HHHhcCCccccccchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCcc-CCCcccccc
Q 003924 411 QAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPRE-GLHPMFKNV 489 (786)
Q Consensus 411 ~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~y~~~~~~~s~~~~~~~k~~~~~-~~~~~f~~~ 489 (786)
....++|++|+...+.+.++...+++.+.+++.+.+.+.+|+.+|.+++|.||+||++|+|+++.. |+||.|...
T Consensus 396 ----~~t~vigr~P~~~v~~~~~~~q~~~~~~~el~~l~~~a~ka~~~y~rtr~~~s~es~kR~ke~~~~~g~~~~~~~~ 471 (529)
T KOG0337|consen 396 ----DDTTVIGRSPQSLVSLESEGHQSILESNRELQVLARTADKAEMLYTRTRPSPSPESLKRAKEMISSKGLHPRFKSF 471 (529)
T ss_pred ----ccceeeccCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHhhhcccCCCcccccc
Confidence 112589999999999999999999999999999999999999999999999999999999999876 899999988
Q ss_pred cccchhhHHHHHHHHhccCCccceeeecccccccccCCCCCChHHHHHHHHHHHHHHHHHHHH
Q 003924 490 LEGGELMALAFSERLKAFRPKQTILEAEGEAARSKHLQGPSSQWVDVMKKKRAVHEKIINLVH 552 (786)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~m~~~r~~~~~~~~~~~ 552 (786)
.+..|.+...|+.+|++||+++||||++. + ++| ||.+++..|.+++
T Consensus 472 ~e~~e~e~~~~~~kik~~r~~~tiFe~~~------------~---~~m--kr~k~~~ai~~rk 517 (529)
T KOG0337|consen 472 GENEEKEKLDILYKIKNYRSRETIFEINK------------S---DVM--KREKFEFAIIKRK 517 (529)
T ss_pred cchhhHHhhHHHHHHhhcccchhhhhhhh------------h---HHH--HhhhcchhHHHHH
Confidence 88888888999999999999999999963 1 488 7888887776554
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.5e-74 Score=598.49 Aligned_cols=372 Identities=37% Similarity=0.618 Sum_probs=358.2
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~ 100 (786)
...+|.+||+.+.+++++...|+..||+||.++||.++.|+|||+.|.||||||.+|++|+++.|.... ..+++|||+
T Consensus 59 ~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p--~~~~~lVLt 136 (476)
T KOG0330|consen 59 SFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP--KLFFALVLT 136 (476)
T ss_pred hhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC--CCceEEEec
Confidence 457899999999999999999999999999999999999999999999999999999999999999853 347899999
Q ss_pred CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccc
Q 003924 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (786)
Q Consensus 101 PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l 180 (786)
||||||.|+.+.+..++..+++++.+++||..+..|...+...|+|+|||||+|++|+.+...+.+..+.++|+||||++
T Consensus 137 PtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrl 216 (476)
T KOG0330|consen 137 PTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRL 216 (476)
T ss_pred CcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred ccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHH
Q 003924 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (786)
Q Consensus 181 ~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~ 260 (786)
++|.|...+..|+..+|..+|++|||||+|..+..+.++.+.+|..|.+.......+.+.+.|..++...|...|+++|.
T Consensus 217 Ld~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~ 296 (476)
T KOG0330|consen 217 LDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLN 296 (476)
T ss_pred hhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred HhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEe
Q 003924 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (786)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~ 340 (786)
+. .+..+||||+|+..+++++-+|...|+.+..+||.|+|..|.-.++.|++|.++||||||+++||+|||.|++|||
T Consensus 297 e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN 374 (476)
T KOG0330|consen 297 EL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN 374 (476)
T ss_pred hh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe
Confidence 87 4689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCCCHH
Q 003924 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEE 396 (786)
Q Consensus 341 ~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~e 396 (786)
||+|.+.++|+||+||+||+|++|.+++||+.-|+..+..++..+++.+...+..+
T Consensus 375 yDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~gkkl~~~~~~~ 430 (476)
T KOG0330|consen 375 YDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALGKKLPEYKVDK 430 (476)
T ss_pred cCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHhcCCCccCcch
Confidence 99999999999999999999999999999999999999999999999887666554
No 3
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-71 Score=592.70 Aligned_cols=360 Identities=39% Similarity=0.633 Sum_probs=341.3
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC-CCCeEEEEEcC
Q 003924 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP-QGGVRALILSP 101 (786)
Q Consensus 23 ~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~-~~g~r~LIL~P 101 (786)
-+|++|+||.+++++|..+||..|||||..+||..+-|+|++.+|.||||||+||++|++++|...+. ....|+|||||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~P 260 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVP 260 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEec
Confidence 38999999999999999999999999999999999999999999999999999999999999987543 23569999999
Q ss_pred cHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 102 treLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
|||||.|++.+.+.++.++++.+++++||.+...|...|..+|||||+|||||.+|+.+...++++++.++|+||||||+
T Consensus 261 TRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRML 340 (691)
T KOG0338|consen 261 TRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRML 340 (691)
T ss_pred cHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred cCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecch---HHHHHHHHHH
Q 003924 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ---EEKHAALLYM 258 (786)
Q Consensus 182 ~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~---~~k~~~Ll~l 258 (786)
+.||..+|++|+..+|.++|++|||||++..+.+++...|+.|+.|.++......+.+.+.|+-+++ ..+...|..+
T Consensus 341 eegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l 420 (691)
T KOG0338|consen 341 EEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL 420 (691)
T ss_pred HHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999889999999987764 3466777777
Q ss_pred HHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCccee
Q 003924 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (786)
Q Consensus 259 L~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~V 338 (786)
+...+ ...+|||+.|+..|..+.-+|.-.|+.+.-+||+|+|.+|...+..|+..+++||||||+|+|||||++|..|
T Consensus 421 ~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tV 498 (691)
T KOG0338|consen 421 ITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTV 498 (691)
T ss_pred HHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEE
Confidence 77765 5689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHH
Q 003924 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384 (786)
Q Consensus 339 I~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~ 384 (786)
|||++|.+...|+||||||+|+|+.|.+++|+...|...+..+...
T Consensus 499 INy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 499 INYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred EeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhh
Confidence 9999999999999999999999999999999999999888877543
No 4
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-70 Score=580.04 Aligned_cols=430 Identities=36% Similarity=0.553 Sum_probs=368.2
Q ss_pred CCCccCCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC---CCCeEE
Q 003924 22 SGGFESLN--LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP---QGGVRA 96 (786)
Q Consensus 22 ~~~f~~lg--Ls~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~---~~g~r~ 96 (786)
..+|++++ |+++++.++...||..+||+|..+||.++.++||++.|+||||||+||++|+++.+..... .....+
T Consensus 3 ~~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vga 82 (567)
T KOG0345|consen 3 PKSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGA 82 (567)
T ss_pred CcchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeE
Confidence 35788887 5599999999999999999999999999999999999999999999999999999954322 223579
Q ss_pred EEEcCcHHHHHHHHHHHHHHccC-CCCeEEEEEcCCChhHHHHHHc-CCCCEEEECcHHHHHHHhh-ccCCCCCceeeEE
Q 003924 97 LILSPTRDLALQTLKFTKELGRY-TDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSE-VEDMSLKSVEYVV 173 (786)
Q Consensus 97 LIL~PtreLa~Q~~~~l~~l~~~-~~l~v~~l~gg~~~~~~~~~l~-~~~dIiV~Tpgrll~~l~~-~~~l~l~~l~~vV 173 (786)
|||+|||||+.|+.+++..|... .++.+.+++||.+.++....+. .+|+|+|||||||++++.. +..+++.+++++|
T Consensus 83 lIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 83 LIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred EEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 99999999999999999998766 7899999999999998887775 6899999999999999987 5557788999999
Q ss_pred eCCccccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccc--cCCCceeeeeecchHHH
Q 003924 174 FDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQEEK 251 (786)
Q Consensus 174 ~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~--~~~~l~~~~~~v~~~~k 251 (786)
+||||++++|||...++.|+..+|.+++|-|||||...++.++++++|+||+.|.+..... .+..+...|..|.+.+|
T Consensus 163 LDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 163 LDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred ecchHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 9999999999999999999999999999999999999999999999999999998887765 66779999999999999
Q ss_pred HHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccc
Q 003924 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (786)
Q Consensus 252 ~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~--g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arG 329 (786)
...|+++|... ...++|||++||..++|++.+|... ...+..+||.|.+.+|..++..|+.....+|+||||+|||
T Consensus 243 ~~~lv~~L~~~--~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 243 LSQLVHLLNNN--KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHHhcc--ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhcc
Confidence 99999999874 6789999999999999999999876 6788999999999999999999999888999999999999
Q ss_pred cCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCCCHHHHHhhhhhHHHHH
Q 003924 330 IDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKI 409 (786)
Q Consensus 330 lDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~e~~~~~~~~~~~~i 409 (786)
||||++|+||+||+|.+++.|+||+|||||+|+.|.|++|+.|.|..|+..+.. ...|..+.+....
T Consensus 321 lDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i------~~~v~le~~~~e~------- 387 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRI------KGKVELERIDTEK------- 387 (567)
T ss_pred CCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHh------cCccchhhhcccc-------
Confidence 999999999999999999999999999999999999999999999998876542 1112121111000
Q ss_pred HHHHhcCCccccccchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCccCCCccc
Q 003924 410 DQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRGKDLPREGLHPMF 486 (786)
Q Consensus 410 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~y~~~~~~~s~~~~~~~k~~~~~~~~~~f 486 (786)
++.. .-+.++.++..+.++ ......||-.|.+.+..++..+|+|.|+|+.-++--+|
T Consensus 388 -----~~~~------------~~~~ir~~~~~DR~~---~dkG~kAFVS~VraY~~H~cs~Ifr~kdLd~~~lA~~Y 444 (567)
T KOG0345|consen 388 -----ASLS------------VYQDIRSIISKDRAV---LDKGLKAFVSHVRAYKKHHCSYIFRLKDLDLGKLATLY 444 (567)
T ss_pred -----cchh------------HHHHHHHHhcccHHH---HhhhHHHHHHHHHHHhhcceeEEEeecCCcHHHHHHHH
Confidence 0000 112234444333332 23356788889999999999999999999875543333
No 5
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-69 Score=600.78 Aligned_cols=371 Identities=37% Similarity=0.612 Sum_probs=347.0
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhc----CCCCCeEEEEE
Q 003924 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH----VPQGGVRALIL 99 (786)
Q Consensus 24 ~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~----~~~~g~r~LIL 99 (786)
.|+.++|++.+..+|...||..|||||.++||.++.|+|+++.|.||||||++|++|++.+|..+ ....++++|||
T Consensus 92 ~f~~~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL 171 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVL 171 (519)
T ss_pred hhhcccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999752 23458899999
Q ss_pred cCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccc
Q 003924 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (786)
Q Consensus 100 ~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~ 179 (786)
+||||||.|+...+.+|+....+++.|++||.+...|...+..+.+|+|+|||||++++.. +.++++.+.|+|+||||+
T Consensus 172 ~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~-g~~~l~~v~ylVLDEADr 250 (519)
T KOG0331|consen 172 APTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE-GSLNLSRVTYLVLDEADR 250 (519)
T ss_pred cCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc-CCccccceeEEEeccHHh
Confidence 9999999999999999999999999999999999999999999999999999999999998 689999999999999999
Q ss_pred cccCChHHHHHHHHhhc-ccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccc--cccCCCceeeeeecchHHHHHHHH
Q 003924 180 LFGMGFAEQLHKILGQL-SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD--TKISPDLKLAFFTLRQEEKHAALL 256 (786)
Q Consensus 180 l~~~gf~~~l~~Il~~l-~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~--~~~~~~l~~~~~~v~~~~k~~~Ll 256 (786)
|++|||..++..|+..+ ++.+|++++|||+|..+..++..++.+|..+.+-.. .....++.+....|....|...|.
T Consensus 251 MldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~ 330 (519)
T KOG0331|consen 251 MLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLG 330 (519)
T ss_pred hhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHH
Confidence 99999999999999999 556689999999999999999999999988877643 355667888888899999999999
Q ss_pred HHHHHhc-cCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCc
Q 003924 257 YMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (786)
Q Consensus 257 ~lL~~~~-~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v 335 (786)
.+|.... ..++++||||+|+..|+.|...|...++.+..|||+.+|.+|..+|+.|++|++.||||||||+||||||+|
T Consensus 331 ~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV 410 (519)
T KOG0331|consen 331 KLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDV 410 (519)
T ss_pred HHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccc
Confidence 9998875 456799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCCCH
Q 003924 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (786)
Q Consensus 336 ~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~ 395 (786)
++|||||+|.+.+.|+||+|||||+|+.|.+++|++..+.....++...+.......|..
T Consensus 411 ~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~e~~q~v~~~ 470 (519)
T KOG0331|consen 411 DLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLREAGQTVPPD 470 (519)
T ss_pred cEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHHHccCCCChH
Confidence 999999999999999999999999999999999999999999888888887766666544
No 6
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=1.1e-68 Score=573.37 Aligned_cols=417 Identities=33% Similarity=0.567 Sum_probs=368.7
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcC--CCCCeEEEEE
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV--PQGGVRALIL 99 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~--~~~g~r~LIL 99 (786)
...|+.+.||+..+++|..+||..+|++|..+||.++.|+|+++.|.||||||+||++|+++.+.... +..+..+|||
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi 160 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLII 160 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEe
Confidence 34688899999999999999999999999999999999999999999999999999999999887543 3568899999
Q ss_pred cCcHHHHHHHHHHHHHHccCC-CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcc
Q 003924 100 SPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (786)
Q Consensus 100 ~PtreLa~Q~~~~l~~l~~~~-~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah 178 (786)
|||||||.|++.+++++..+. ++.+..++||.........+..+++|+|+|||||++|+++...+-+.+++++|+||||
T Consensus 161 ~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEAD 240 (543)
T KOG0342|consen 161 CPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEAD 240 (543)
T ss_pred cccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecch
Confidence 999999999999999999888 9999999999998888788888999999999999999999888888999999999999
Q ss_pred ccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCC-Ccceeeccccc--cCCCceeeeeecchHHHHHHH
Q 003924 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRD-PHLVRLDVDTK--ISPDLKLAFFTLRQEEKHAAL 255 (786)
Q Consensus 179 ~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~-p~~i~~~~~~~--~~~~l~~~~~~v~~~~k~~~L 255 (786)
+++++||...+..|+..+|..+|++|||||.|+.+..+++..|.. |.++.++.... ....+.+.|+.++...++..|
T Consensus 241 rlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll 320 (543)
T KOG0342|consen 241 RLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLL 320 (543)
T ss_pred hhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHH
Confidence 999999999999999999999999999999999999999988765 77777765443 345788889999998889999
Q ss_pred HHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCc
Q 003924 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (786)
Q Consensus 256 l~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v 335 (786)
..+|++.+.. .++||||+|+..+.+++++|....++|..|||.++|..|..+...|++.+..|||||||+|||+|+|+|
T Consensus 321 ~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V 399 (543)
T KOG0342|consen 321 YTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDV 399 (543)
T ss_pred HHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCc
Confidence 9999988644 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCCCHHHHHhhhhhHHHHHHHHHhc
Q 003924 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIAN 415 (786)
Q Consensus 336 ~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~e~~~~~~~~~~~~i~~~~~~ 415 (786)
++||+||+|.++.+|+||+|||||.|..|.+++|+.|.|.+++.+|. ..++...+
T Consensus 400 ~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK---~lpl~~~e---------------------- 454 (543)
T KOG0342|consen 400 DWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLK---KLPLEEFE---------------------- 454 (543)
T ss_pred eEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHh---hCCCcccC----------------------
Confidence 99999999999999999999999999999999999999999999886 22222222
Q ss_pred CCccccccchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCCCCCccccccC
Q 003924 416 GETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRG 474 (786)
Q Consensus 416 ~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~y~~~~~~~s~~~~~~~ 474 (786)
+|..-.+.....++.++..+ ..+.+.|..||+.|...+..+|...+...
T Consensus 455 -------~~~~~~~~v~~~~~~li~~~---y~~~~aak~ay~syl~~y~s~slk~~~~~ 503 (543)
T KOG0342|consen 455 -------FPPLKPEDVQSQLEKLISKN---YSLKEAAKEAYKSYLGAYNSHSLKDIFNV 503 (543)
T ss_pred -------CCCCCHHHHHHHHHHHHHHH---hhHHHHHHHHHHhhhhhccchhhhccccc
Confidence 22222233334445555443 34578888999999998888887665554
No 7
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.7e-68 Score=610.20 Aligned_cols=365 Identities=41% Similarity=0.687 Sum_probs=340.8
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 23 ~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
..|++|+|++.++++|.++||..|||||..+||.++.|+|+++.|+||||||++|++|+++.+..........+|||+||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 67999999999999999999999999999999999999999999999999999999999999874211111129999999
Q ss_pred HHHHHHHHHHHHHHccCC-CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 103 RDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 103 reLa~Q~~~~l~~l~~~~-~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
||||.|+++.+..++.+. ++.+.+++||.+...+...+..+++|||+|||||++|+.. ..++++.++++|+||||+|+
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~-~~l~l~~v~~lVlDEADrmL 187 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKR-GKLDLSGVETLVLDEADRML 187 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHc-CCcchhhcCEEEeccHhhhh
Confidence 999999999999999998 8999999999999999999988899999999999999998 47999999999999999999
Q ss_pred cCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccc--cCCCceeeeeecchHH-HHHHHHHH
Q 003924 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK--ISPDLKLAFFTLRQEE-KHAALLYM 258 (786)
Q Consensus 182 ~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~--~~~~l~~~~~~v~~~~-k~~~Ll~l 258 (786)
+|||.+++..|+..+|.++|+++||||+|..+..+++.++.+|..+.+..... ....+.+.|+.+.... |...|..+
T Consensus 188 d~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~l 267 (513)
T COG0513 188 DMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKL 267 (513)
T ss_pred cCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888885555 6788999999998776 99999999
Q ss_pred HHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCccee
Q 003924 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV 338 (786)
Q Consensus 259 L~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~V 338 (786)
+... ...++||||+|++.|+.++..|...|+.+..|||+|+|.+|..++..|++|+.+||||||+++||||||++++|
T Consensus 268 l~~~--~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~V 345 (513)
T COG0513 268 LKDE--DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHV 345 (513)
T ss_pred HhcC--CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccccee
Confidence 9865 34479999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCHhHHHHHhhccccCCCccEEEEEEecc-cHHHHHHHHHHhcCCCC
Q 003924 339 INWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPIR 390 (786)
Q Consensus 339 I~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~-e~~~l~~l~~~l~~~~~ 390 (786)
||||+|.+++.|+||+|||||+|+.|.+++|+++. |..++..++..+...+.
T Consensus 346 inyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~~~~~~ 398 (513)
T COG0513 346 INYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRLERKLP 398 (513)
T ss_pred EEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999986 89999999988876633
No 8
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-67 Score=567.86 Aligned_cols=417 Identities=32% Similarity=0.554 Sum_probs=361.9
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhc--CCCCCeEEEEE
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH--VPQGGVRALIL 99 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~--~~~~g~r~LIL 99 (786)
..-|++|+||..++++|...+|..||.+|+.+||..|.|+||++.|.||||||+||++|+++.|... ++..|..+|||
T Consensus 68 ~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 3479999999999999999999999999999999999999999999999999999999999999754 34568899999
Q ss_pred cCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccc
Q 003924 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (786)
Q Consensus 100 ~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~ 179 (786)
+||||||.|+++++...++++++.+.+++||.........+ .+.+|+|||||||+.|+.+...++.++++++|+||||+
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi-~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR 226 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI-SQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR 226 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh-hcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH
Confidence 99999999999999999999999999999999987766555 46899999999999999998889999999999999999
Q ss_pred cccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccc--cccCCCceeeeeecchHHHHHHHHH
Q 003924 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD--TKISPDLKLAFFTLRQEEKHAALLY 257 (786)
Q Consensus 180 l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~--~~~~~~l~~~~~~v~~~~k~~~Ll~ 257 (786)
+++|||...|..|+..+|..+|++|||||...++..+++..+.+|.+|.+... ...+.++.+.|+.|+..+|+..|..
T Consensus 227 ~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~s 306 (758)
T KOG0343|consen 227 MLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWS 306 (758)
T ss_pred HHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988733 4567789999999999999999999
Q ss_pred HHHHhccCCCcEEEEEcchhhHHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCc
Q 003924 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (786)
Q Consensus 258 lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~--g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v 335 (786)
+|..++ ..++|||++||.+|.++++.+... |+++..+||.|+|..|..++.+|......||+|||+++||||+|.|
T Consensus 307 FI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaV 384 (758)
T KOG0343|consen 307 FIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAV 384 (758)
T ss_pred HHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCccc
Confidence 999885 578999999999999999999875 7889999999999999999999999999999999999999999999
Q ss_pred ceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHH-HHHHHHHHhcCCCCCCCCHHHHHhhhhhHHHHHHHHHh
Q 003924 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA-YLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIA 414 (786)
Q Consensus 336 ~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~-~l~~l~~~l~~~~~~~p~~e~~~~~~~~~~~~i~~~~~ 414 (786)
+|||++|.|.+..+|+||+||++|.+..|.++++++|.|.. .+..|+.-. . |..+ +.
T Consensus 385 dwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k~-I-----~i~~-i~--------------- 442 (758)
T KOG0343|consen 385 DWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKKK-I-----PIKE-IK--------------- 442 (758)
T ss_pred ceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHcC-C-----CHHh-hc---------------
Confidence 99999999999999999999999999999999999999844 444444321 1 1111 00
Q ss_pred cCCccccccchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCCCCCccccccC
Q 003924 415 NGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAFRLYSKTKPLPSKESIRRG 474 (786)
Q Consensus 415 ~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~~~y~~~~~~~s~~~~~~~ 474 (786)
....-+......++.++..+.+ |...|..++..|.++-...-...++..
T Consensus 443 --------i~~~k~~~i~~~l~~ll~~~~e---Lk~~aqka~isY~rsi~~~rdK~~f~~ 491 (758)
T KOG0343|consen 443 --------IDPEKLTSIRNKLEALLAKDPE---LKEYAQKAFISYLRSIYLMRDKRVFDV 491 (758)
T ss_pred --------cCHHHhhhHHHHHHHHHhhCHH---HHHHHHHHHHHHHHHHHhhccchhhcc
Confidence 0011111233445666666655 456677888888876555444444443
No 9
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.7e-67 Score=541.03 Aligned_cols=372 Identities=36% Similarity=0.560 Sum_probs=344.4
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~ 100 (786)
...+|+.|||++|+.+.|..+|+..|||+|..|||.||.|+|++.+|.||||||++|.+|++++|..+ ..|..+||++
T Consensus 5 t~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsed--P~giFalvlT 82 (442)
T KOG0340|consen 5 TAKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSED--PYGIFALVLT 82 (442)
T ss_pred ccCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccC--CCcceEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999987 4688999999
Q ss_pred CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhcc---CCCCCceeeEEeCCc
Q 003924 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEA 177 (786)
Q Consensus 101 PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~---~l~l~~l~~vV~DEa 177 (786)
||||||.|+.+.|.-+++..++++++++||.++-.+-..+..+|+|||+||||+.+++.... .+.+.+++++|+|||
T Consensus 83 PTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEA 162 (442)
T KOG0340|consen 83 PTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEA 162 (442)
T ss_pred chHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecch
Confidence 99999999999999999999999999999999999999999999999999999999998742 245889999999999
Q ss_pred cccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCC--cceeeccccccCCCceeeeeecchHHHHHHH
Q 003924 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDP--HLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (786)
Q Consensus 178 h~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p--~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~L 255 (786)
|++++..|...|..+...+|..+|+++||||+.+.+..+...-...+ ..+...........+.+.|+.|+...+...|
T Consensus 163 DrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYL 242 (442)
T KOG0340|consen 163 DRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYL 242 (442)
T ss_pred hhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHH
Confidence 99999999999999999999999999999999998887766555543 3334444556677889999999999999999
Q ss_pred HHHHHHhcc-CCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCC
Q 003924 256 LYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (786)
Q Consensus 256 l~lL~~~~~-~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~ 334 (786)
.++|...-. ....++||++|+..|+.++..|...++.+..+||.|+|.+|...+.+|+++..+||||||||+||+|||.
T Consensus 243 v~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~ 322 (442)
T KOG0340|consen 243 VHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPT 322 (442)
T ss_pred HHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCc
Confidence 999987644 5778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCCC
Q 003924 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (786)
Q Consensus 335 v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~ 394 (786)
|++|||||+|.+|+.|+||+||++|+|+.|.+++|+++.|+..+..++...++.+.+.+.
T Consensus 323 V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~~~ 382 (442)
T KOG0340|consen 323 VELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEYNK 382 (442)
T ss_pred eeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcccccccc
Confidence 999999999999999999999999999999999999999999999999999988876543
No 10
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-65 Score=514.97 Aligned_cols=373 Identities=34% Similarity=0.574 Sum_probs=351.9
Q ss_pred hccCCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEE
Q 003924 17 KKKSKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRA 96 (786)
Q Consensus 17 ~~~~~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~ 96 (786)
++..-..+|++|||++++++++...||..|+.+|+.|||.|+.|+||+++|..|+|||.+|.+.+++.+.-. ....++
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~--~r~tQ~ 98 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS--VRETQA 98 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc--cceeeE
Confidence 455678899999999999999999999999999999999999999999999999999999999888877643 234689
Q ss_pred EEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCC
Q 003924 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (786)
Q Consensus 97 LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DE 176 (786)
|||+||||||.|+.+++..++...++.+..++||.+..+.+..+.-+..++.+|||++++++.. ..+.-..+.++|+||
T Consensus 99 lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr-~~L~tr~vkmlVLDE 177 (400)
T KOG0328|consen 99 LILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR-RSLRTRAVKMLVLDE 177 (400)
T ss_pred EEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh-ccccccceeEEEecc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 578899999999999
Q ss_pred ccccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHH-HHHHH
Q 003924 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAAL 255 (786)
Q Consensus 177 ah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~-k~~~L 255 (786)
||.|++.||..++..|...+|++.|++++|||+|..+.+....++.+|+.+.+..+......+.+.|+.+..++ |.+.|
T Consensus 178 aDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtL 257 (400)
T KOG0328|consen 178 ADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTL 257 (400)
T ss_pred HHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHH
Confidence 99999999999999999999999999999999999999999999999999999988888888999999998777 99999
Q ss_pred HHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCc
Q 003924 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (786)
Q Consensus 256 l~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v 335 (786)
+++.... .-.+.+|||||+..+++|.+.+++..+.++.+||+|+|.+|..++..|++|+.+|||+||+.+||+|+|.|
T Consensus 258 cdLYd~L--tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qV 335 (400)
T KOG0328|consen 258 CDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQV 335 (400)
T ss_pred HHHhhhh--ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCccee
Confidence 8888765 35689999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCCC
Q 003924 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (786)
Q Consensus 336 ~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~ 394 (786)
.+|||||+|.+...|+||+||.||.|+.|.++.|+..+|+..+.+++.++...+...|.
T Consensus 336 slviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst~i~emp~ 394 (400)
T KOG0328|consen 336 SLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYSTQIDEMPM 394 (400)
T ss_pred EEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHHhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999887766654
No 11
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.2e-65 Score=549.23 Aligned_cols=364 Identities=37% Similarity=0.596 Sum_probs=343.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcC-------CCCCe
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-------PQGGV 94 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~-------~~~g~ 94 (786)
-.+|++.||+..+++.|...||..|||||+.+||..++.+|+|+.|.||||||++|++|++..+.... ...|+
T Consensus 244 lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gp 323 (673)
T KOG0333|consen 244 LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGP 323 (673)
T ss_pred ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCc
Confidence 35799999999999999999999999999999999999999999999999999999999998775433 13588
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEe
Q 003924 95 RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174 (786)
Q Consensus 95 r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~ 174 (786)
.++||.||||||.|+.++...|+...+++++.++||.+.+++--.+..+|.|+|+|||+|.+.+.+ ..+-++++.|||+
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Len-r~lvl~qctyvvl 402 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLEN-RYLVLNQCTYVVL 402 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHH-HHHHhccCceEec
Confidence 999999999999999999999999999999999999999999777889999999999999999987 4788999999999
Q ss_pred CCccccccCChHHHHHHHHhhcccC-------------------------CceEEEeccCcHHHHHHHHhcCCCCcceee
Q 003924 175 DEADCLFGMGFAEQLHKILGQLSEN-------------------------RQTLLFSATLPSALAEFAKAGLRDPHLVRL 229 (786)
Q Consensus 175 DEah~l~~~gf~~~l~~Il~~l~~~-------------------------~q~ll~SATl~~~l~~~~~~~l~~p~~i~~ 229 (786)
||||+|.+|||.+++..||..+|.. +|+++||||+|+.+..+++.||.+|+.+.+
T Consensus 403 deadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vti 482 (673)
T KOG0333|consen 403 DEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTI 482 (673)
T ss_pred cchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEe
Confidence 9999999999999999999998731 699999999999999999999999999999
Q ss_pred ccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHH
Q 003924 230 DVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHV 309 (786)
Q Consensus 230 ~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l 309 (786)
.......+.+++.++.+..+++...|..+|.+. -..++|||+|++..|+.|++.|.+.|+.|..+||+-+|++|+.+|
T Consensus 483 g~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL 560 (673)
T KOG0333|consen 483 GSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENAL 560 (673)
T ss_pred ccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHH
Confidence 999999999999999999999999999999876 467899999999999999999999999999999999999999999
Q ss_pred HHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCC
Q 003924 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP 388 (786)
Q Consensus 310 ~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~ 388 (786)
..|+.|..+||||||+|+||||||+|.+|||||++.+...|+||||||||||+.|++++|+++.|-..+++|...+...
T Consensus 561 ~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es 639 (673)
T KOG0333|consen 561 ADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRES 639 (673)
T ss_pred HHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998888887766543
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.8e-62 Score=555.51 Aligned_cols=369 Identities=33% Similarity=0.542 Sum_probs=338.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC-----CCCeEE
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP-----QGGVRA 96 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~-----~~g~r~ 96 (786)
..+|++|||++.++++|..+||..|||+|.+|||.++.|+|++++||||||||++|++|+++.+..... ..++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 468999999999999999999999999999999999999999999999999999999999998865322 235789
Q ss_pred EEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCC
Q 003924 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (786)
Q Consensus 97 LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DE 176 (786)
|||+||+|||.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|++++.. ..+.+.++.+|||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~-~~~~l~~v~~lViDE 165 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ-NHINLGAIQVVVLDE 165 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccccEEEEec
Confidence 9999999999999999999999999999999999999998888888999999999999999876 578899999999999
Q ss_pred ccccccCChHHHHHHHHhhccc--CCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHH
Q 003924 177 ADCLFGMGFAEQLHKILGQLSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254 (786)
Q Consensus 177 ah~l~~~gf~~~l~~Il~~l~~--~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~ 254 (786)
||++++++|...+..++..++. .+++++||||++..+..++...+.+|..+.+.........+.+.++.+....+...
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~~ 245 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMRL 245 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHHH
Confidence 9999999999999999999984 56789999999999999999999999888877666556667777777777888888
Q ss_pred HHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCC
Q 003924 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (786)
Q Consensus 255 Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~ 334 (786)
|..++... ...++||||+|+..|+.++..|...++.+..+||+|++.+|..+++.|++|+++||||||++++|||||+
T Consensus 246 l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~ 323 (423)
T PRK04837 246 LQTLIEEE--WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPA 323 (423)
T ss_pred HHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccc
Confidence 88888654 4678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCC
Q 003924 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (786)
Q Consensus 335 v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p 393 (786)
+++||+||+|.++..|+||+||+||+|+.|.|++|++++|...+..++.+++..+...+
T Consensus 324 v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~~~~~~~~ 382 (423)
T PRK04837 324 VTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSK 382 (423)
T ss_pred cCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999888887765433
No 13
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.2e-61 Score=561.91 Aligned_cols=371 Identities=34% Similarity=0.577 Sum_probs=335.9
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcC---CCCCeEEEE
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRALI 98 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~---~~~g~r~LI 98 (786)
..+|++++|++.++++|..+||..|||+|.++||.++.|+|+|++||||||||++|++|++..+.... ...++.+||
T Consensus 129 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LI 208 (545)
T PTZ00110 129 VVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLV 208 (545)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 35799999999999999999999999999999999999999999999999999999999998876432 234678999
Q ss_pred EcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcc
Q 003924 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (786)
Q Consensus 99 L~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah 178 (786)
|+||+|||.|+.+.+..|+...++++.+++||.....+...+..+++|+|+||++|++++.. ....+..+.+|||||||
T Consensus 209 L~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViDEAd 287 (545)
T PTZ00110 209 LAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLES-NVTNLRRVTYLVLDEAD 287 (545)
T ss_pred ECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHc-CCCChhhCcEEEeehHH
Confidence 99999999999999999999999999999999999888888889999999999999999986 46779999999999999
Q ss_pred ccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCC-CCcceeecccc-ccCCCceeeeeecchHHHHHHHH
Q 003924 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDT-KISPDLKLAFFTLRQEEKHAALL 256 (786)
Q Consensus 179 ~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~-~p~~i~~~~~~-~~~~~l~~~~~~v~~~~k~~~Ll 256 (786)
++++++|..++..|+..+++.+|+++||||+|..+..++..++. +|..+.+.... .....+.+.+..+....+...|.
T Consensus 288 ~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~ 367 (545)
T PTZ00110 288 RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLK 367 (545)
T ss_pred hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHH
Confidence 99999999999999999999999999999999999999988875 46555554322 33456777777788888889999
Q ss_pred HHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcc
Q 003924 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (786)
Q Consensus 257 ~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~ 336 (786)
.+|......+.++||||+|+..|+.++..|...++.+..+||++++.+|..+++.|++|++.||||||++++|||||+++
T Consensus 368 ~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~ 447 (545)
T PTZ00110 368 MLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVK 447 (545)
T ss_pred HHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCC
Confidence 99888765678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCC
Q 003924 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (786)
Q Consensus 337 ~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p 393 (786)
+|||||+|.++..|+||+||+||+|+.|.|++|+++++...+.++...+.......|
T Consensus 448 ~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~~~q~vp 504 (545)
T PTZ00110 448 YVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLREAKQPVP 504 (545)
T ss_pred EEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHHccCCCC
Confidence 999999999999999999999999999999999999999888888777665544443
No 14
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-62 Score=523.99 Aligned_cols=366 Identities=33% Similarity=0.552 Sum_probs=328.4
Q ss_pred cCCCCCccCCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC----CCC
Q 003924 19 KSKSGGFESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP----QGG 93 (786)
Q Consensus 19 ~~~~~~f~~lgLs~~ll~~l~~-~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~----~~g 93 (786)
--++..|.+|||++.++..|.. |++..||.+|.++||.++.|+|+++.++||||||++|++|+++.|....+ ..|
T Consensus 132 ~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G 211 (708)
T KOG0348|consen 132 PFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDG 211 (708)
T ss_pred ccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCC
Confidence 3568899999999999999986 89999999999999999999999999999999999999999999976543 468
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHccCCC-CeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeE
Q 003924 94 VRALILSPTRDLALQTLKFTKELGRYTD-LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYV 172 (786)
Q Consensus 94 ~r~LIL~PtreLa~Q~~~~l~~l~~~~~-l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~v 172 (786)
+-+|||+||||||.|+++.++.+.+.+. +--++++||.........+..+++|+|+|||||++|+.+...+.++.+.+|
T Consensus 212 ~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwl 291 (708)
T KOG0348|consen 212 PYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWL 291 (708)
T ss_pred ceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEE
Confidence 8999999999999999999999887654 344678899999988899999999999999999999999888999999999
Q ss_pred EeCCccccccCChHHHHHHHHhhc-------------ccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccc-------
Q 003924 173 VFDEADCLFGMGFAEQLHKILGQL-------------SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD------- 232 (786)
Q Consensus 173 V~DEah~l~~~gf~~~l~~Il~~l-------------~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~------- 232 (786)
||||+|+++++||...+..|+..+ |...|.+|+|||+...+..++...|.+|.+|.+|..
T Consensus 292 VlDEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~ 371 (708)
T KOG0348|consen 292 VLDEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPK 371 (708)
T ss_pred EecchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcc
Confidence 999999999999999999999886 234688999999999999999999999999984421
Q ss_pred ------------------cccCCCceeeeeecchHHHHHHHHHHHHHhcc--CCCcEEEEEcchhhHHHHHHHHHHc---
Q 003924 233 ------------------TKISPDLKLAFFTLRQEEKHAALLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE--- 289 (786)
Q Consensus 233 ------------------~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~--~~~k~IVF~~t~~~ae~l~~~L~~~--- 289 (786)
..++..+.+.|..|++.-++-.|..+|.+... ...++|||+++++.|++-+.+|...
T Consensus 372 ~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~ 451 (708)
T KOG0348|consen 372 DKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLS 451 (708)
T ss_pred hhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhc
Confidence 23455677888999999898888888876543 3457899999999999999888652
Q ss_pred -------------------CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHH
Q 003924 290 -------------------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIF 350 (786)
Q Consensus 290 -------------------g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~ 350 (786)
+..+..+||+|.|++|..++..|......||+||||++||||+|.|++||+||+|.++.+|
T Consensus 452 ~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~ady 531 (708)
T KOG0348|consen 452 HLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADY 531 (708)
T ss_pred ccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHH
Confidence 3457789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccCCCccEEEEEEecccHHHHHHHHHH
Q 003924 351 VHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384 (786)
Q Consensus 351 vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~ 384 (786)
+||||||+|+|..|.+++|+.|.|..|+..+...
T Consensus 532 lHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 532 LHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred HHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 9999999999999999999999999999887653
No 15
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=1.3e-60 Score=558.50 Aligned_cols=371 Identities=34% Similarity=0.605 Sum_probs=341.6
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 23 ~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
.+|.+|+|++.++++|..+||..|||+|.++||.++.|+|+|++||||||||++|++|+++.+... ..++++|||+||
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~--~~~~~~LIL~PT 83 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE--LKAPQILVLAPT 83 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc--cCCCeEEEEeCc
Confidence 469999999999999999999999999999999999999999999999999999999999988643 235689999999
Q ss_pred HHHHHHHHHHHHHHccCC-CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 103 RDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 103 reLa~Q~~~~l~~l~~~~-~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
++||.|+++.+..|.... ++.+..++||.+.+.+...+..+++|||+||++|++++.. ..+.++++.+|||||||.|+
T Consensus 84 reLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r-~~l~l~~l~~lVlDEAd~ml 162 (629)
T PRK11634 84 RELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR-GTLDLSKLSGLVLDEADEML 162 (629)
T ss_pred HHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcchhhceEEEeccHHHHh
Confidence 999999999999987654 7999999999999999999989999999999999999987 46889999999999999999
Q ss_pred cCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHH
Q 003924 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261 (786)
Q Consensus 182 ~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~ 261 (786)
+++|...+..|+..+|..+|+++||||+|..+..++..++.+|..+.+.......+.+.+.|+.+....+...|..+|..
T Consensus 163 ~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~ 242 (629)
T PRK11634 163 RMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 (629)
T ss_pred hcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998888777666667788888888888898999888875
Q ss_pred hccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEec
Q 003924 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINW 341 (786)
Q Consensus 262 ~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~ 341 (786)
. ...++||||+|+.+++.++..|...++.+..+||+|++.+|..+++.|++|+++||||||++++|||+|++++||||
T Consensus 243 ~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~ 320 (629)
T PRK11634 243 E--DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNY 320 (629)
T ss_pred c--CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEe
Confidence 3 45789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCC--CCCHHHH
Q 003924 342 DFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA--APSEEEV 398 (786)
Q Consensus 342 d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~--~p~~e~~ 398 (786)
|+|.++..|+||+|||||+|+.|.|++|+++.|...+..++..++..+.. .|..+.+
T Consensus 321 d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~~~~i~~~~~p~~~~~ 379 (629)
T PRK11634 321 DIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELL 379 (629)
T ss_pred CCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHhCCCcceecCCcHHHH
Confidence 99999999999999999999999999999999999999998888776644 3444433
No 16
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.5e-61 Score=560.08 Aligned_cols=371 Identities=36% Similarity=0.564 Sum_probs=338.7
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcC-----CCCCeEEE
Q 003924 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-----PQGGVRAL 97 (786)
Q Consensus 23 ~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~-----~~~g~r~L 97 (786)
.+|++|+|++.++++|..+||..|||+|.++||.++.|+|++++||||||||++|++|+++.+.... ...++++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4799999999999999999999999999999999999999999999999999999999999886432 12257899
Q ss_pred EEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCc
Q 003924 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (786)
Q Consensus 98 IL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEa 177 (786)
||+||+||+.|+++.+..|+...++++..++||.....+...+..+++|||+||++|++++.....+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 99999999999999999999999999999999999999888888899999999999999987644577899999999999
Q ss_pred cccccCChHHHHHHHHhhccc--CCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHH
Q 003924 178 DCLFGMGFAEQLHKILGQLSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (786)
Q Consensus 178 h~l~~~gf~~~l~~Il~~l~~--~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~L 255 (786)
|++++++|...+..|+..++. .+|+++||||++..+..++..++.+|..+.+.........+.+.++.+....+...|
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~~L 248 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQTLL 248 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHHHH
Confidence 999999999999999999986 789999999999999999999999887776666555556677777777788888888
Q ss_pred HHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCc
Q 003924 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (786)
Q Consensus 256 l~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v 335 (786)
+.++... .+.++||||+|+..|+.++..|...++.+..+||+|++.+|..+++.|++|+++||||||++++|||||++
T Consensus 249 ~~ll~~~--~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V 326 (572)
T PRK04537 249 LGLLSRS--EGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGV 326 (572)
T ss_pred HHHHhcc--cCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCC
Confidence 8888653 56789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCCCH
Q 003924 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (786)
Q Consensus 336 ~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~ 395 (786)
++|||||+|.++..|+||+||+||.|..|.|++|+++.+...+.+++.++...+...+..
T Consensus 327 ~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~~~~~~~~~~~~ 386 (572)
T PRK04537 327 KYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAYIEQKIPVEPVT 386 (572)
T ss_pred CEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHHHcCCCCccccC
Confidence 999999999999999999999999999999999999999999999998888776544433
No 17
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.5e-61 Score=549.04 Aligned_cols=364 Identities=36% Similarity=0.611 Sum_probs=336.8
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P 101 (786)
..+|++|+|++.++++|..+||..|||+|.+|||.++.|+|++++||||||||++|++|+++.+... ....++|||+|
T Consensus 3 ~~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~--~~~~~~lil~P 80 (460)
T PRK11776 3 MTAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVK--RFRVQALVLCP 80 (460)
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhc--cCCceEEEEeC
Confidence 4589999999999999999999999999999999999999999999999999999999999998643 23568999999
Q ss_pred cHHHHHHHHHHHHHHccCC-CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccc
Q 003924 102 TRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (786)
Q Consensus 102 treLa~Q~~~~l~~l~~~~-~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l 180 (786)
|++||.|+.+.++.++... ++++..++||.+...+...+..+++|+|+||++|.+++.. ..+.+.++++|||||||++
T Consensus 81 treLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~-~~~~l~~l~~lViDEad~~ 159 (460)
T PRK11776 81 TRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRK-GTLDLDALNTLVLDEADRM 159 (460)
T ss_pred CHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHc-CCccHHHCCEEEEECHHHH
Confidence 9999999999999988654 7999999999999999999999999999999999999987 4678999999999999999
Q ss_pred ccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHH
Q 003924 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (786)
Q Consensus 181 ~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~ 260 (786)
++++|...+..++..+|..+|+++||||+|+.+..++..++.+|..+.+.... ..+.+.+.|+.+....+...|..++.
T Consensus 160 l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~ll~ 238 (460)
T PRK11776 160 LDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH-DLPAIEQRFYEVSPDERLPALQRLLL 238 (460)
T ss_pred hCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC-CCCCeeEEEEEeCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999888776554 34557888888888889988888887
Q ss_pred HhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEe
Q 003924 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (786)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~ 340 (786)
.. ...++||||+|+..++.++..|...++.+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 239 ~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~ 316 (460)
T PRK11776 239 HH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVIN 316 (460)
T ss_pred hc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEE
Confidence 54 4578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCC
Q 003924 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (786)
Q Consensus 341 ~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~ 391 (786)
||+|.++..|+||+||+||+|+.|.|++|+++.|...+..++.+++..+..
T Consensus 317 ~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~~~~~~~~ 367 (460)
T PRK11776 317 YELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDYLGRKLNW 367 (460)
T ss_pred ecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHHhCCCCce
Confidence 999999999999999999999999999999999999999998888766543
No 18
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.1e-63 Score=504.59 Aligned_cols=370 Identities=31% Similarity=0.531 Sum_probs=348.4
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEE
Q 003924 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (786)
Q Consensus 20 ~~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL 99 (786)
-+++.|+++.|-.+++..|.++||..|+|+|.++||.++.|+|+++.|..|+|||.+|++|+++++... ....+++|+
T Consensus 82 TkG~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~--~~~IQ~~il 159 (459)
T KOG0326|consen 82 TKGNEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK--KNVIQAIIL 159 (459)
T ss_pred ccCccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc--ccceeEEEE
Confidence 468999999999999999999999999999999999999999999999999999999999999998753 356789999
Q ss_pred cCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccc
Q 003924 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (786)
Q Consensus 100 ~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~ 179 (786)
+||||||.|+...++++++++++.+...+||++..+.+-.+.....++|+||||+++++.. .-..++++.++|+||||.
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~K-gVa~ls~c~~lV~DEADK 238 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKK-GVADLSDCVILVMDEADK 238 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhc-ccccchhceEEEechhhh
Confidence 9999999999999999999999999999999999998888888899999999999999987 567899999999999999
Q ss_pred cccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHH
Q 003924 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (786)
Q Consensus 180 l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL 259 (786)
|++..|...+..++..+|+++|++++|||+|-.+..|+..++.+|..|.+-.+- ....+.++|-.|.+..|...|-.++
T Consensus 239 lLs~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eL-tl~GvtQyYafV~e~qKvhCLntLf 317 (459)
T KOG0326|consen 239 LLSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEEL-TLKGVTQYYAFVEERQKVHCLNTLF 317 (459)
T ss_pred hhchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhh-hhcchhhheeeechhhhhhhHHHHH
Confidence 999999999999999999999999999999999999999999999998876543 3456788899999999999888777
Q ss_pred HHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeE
Q 003924 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (786)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI 339 (786)
... .-.+.|||||+...||.++..+.+.|++|.++|+.|-|+.|..++..|++|.++.|||||.+.|||||+.+++||
T Consensus 318 skL--qINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVI 395 (459)
T KOG0326|consen 318 SKL--QINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVI 395 (459)
T ss_pred HHh--cccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEE
Confidence 665 356899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCCCH
Q 003924 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (786)
Q Consensus 340 ~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~ 395 (786)
|||+|.++++|+||+||.||.|..|.|+.+++.+|...+..++..|+..+.+.|..
T Consensus 396 NFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~pip~~ 451 (459)
T KOG0326|consen 396 NFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKPIPSN 451 (459)
T ss_pred ecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhccccccCCCc
Confidence 99999999999999999999999999999999999999999999999999988753
No 19
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=7.7e-61 Score=546.39 Aligned_cols=363 Identities=37% Similarity=0.626 Sum_probs=332.7
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC----CCCeEEEEE
Q 003924 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP----QGGVRALIL 99 (786)
Q Consensus 24 ~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~----~~g~r~LIL 99 (786)
+|++|+|++.++++|.++||..|||+|.++||.++.|+|++++||||||||++|++|+++.+..... ....++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 7999999999999999999999999999999999999999999999999999999999999865321 124589999
Q ss_pred cCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccc
Q 003924 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (786)
Q Consensus 100 ~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~ 179 (786)
+||++||.|+.+.+..+....++.+..++||.+...+...+..+++|+|+||++|++++.. ..+.++++++|||||||+
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~-~~~~l~~v~~lViDEah~ 160 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ-NAVKLDQVEILVLDEADR 160 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc-CCcccccceEEEeecHHH
Confidence 9999999999999999999999999999999999988888888999999999999998876 467899999999999999
Q ss_pred cccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHH
Q 003924 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (786)
Q Consensus 180 l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL 259 (786)
+++++|...+..++..++..+|+++||||++..+..++...+.+|..+.+.........+.+.+..+....+...|..++
T Consensus 161 ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 161 MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred HhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877666555667777777777777776666666
Q ss_pred HHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeE
Q 003924 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (786)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI 339 (786)
... ...++||||+|++.++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||||++++||
T Consensus 241 ~~~--~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI 318 (456)
T PRK10590 241 GKG--NWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVV 318 (456)
T ss_pred HcC--CCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEE
Confidence 543 456899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCC
Q 003924 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPI 389 (786)
Q Consensus 340 ~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~ 389 (786)
+|++|.++..|+||+||+||+|..|.|++|++++|...+.+++..+...+
T Consensus 319 ~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~l~~~~ 368 (456)
T PRK10590 319 NYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEI 368 (456)
T ss_pred EeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999988877654
No 20
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.8e-60 Score=546.03 Aligned_cols=370 Identities=32% Similarity=0.534 Sum_probs=334.7
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhc-----CCCCCeEE
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH-----VPQGGVRA 96 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~-----~~~~g~r~ 96 (786)
..+|++++|++.++++|...||..|||+|.++||.++.|+|+++.||||||||++|++|++..+... ....++++
T Consensus 120 i~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~a 199 (518)
T PLN00206 120 ILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLA 199 (518)
T ss_pred hcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceE
Confidence 4579999999999999999999999999999999999999999999999999999999999887532 12257799
Q ss_pred EEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCC
Q 003924 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (786)
Q Consensus 97 LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DE 176 (786)
|||+||+|||.|+.+.++.++...++.+..++||.....+...+..+++|+|+|||+|.+++.. ..+.++++.+|||||
T Consensus 200 LIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~-~~~~l~~v~~lViDE 278 (518)
T PLN00206 200 MVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSK-HDIELDNVSVLVLDE 278 (518)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccchheeEEEeec
Confidence 9999999999999999999999999999999999999999888888999999999999999987 477899999999999
Q ss_pred ccccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHH
Q 003924 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256 (786)
Q Consensus 177 ah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll 256 (786)
||+|+++||..++..|+..++ .+|+++||||+|..+..++..++.++..+.+.........+.+.+..+....+...|.
T Consensus 279 ad~ml~~gf~~~i~~i~~~l~-~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~l~ 357 (518)
T PLN00206 279 VDCMLERGFRDQVMQIFQALS-QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQKLF 357 (518)
T ss_pred HHHHhhcchHHHHHHHHHhCC-CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHHHH
Confidence 999999999999999999885 7899999999999999999999999988877766555566777777788778888888
Q ss_pred HHHHHhccCCCcEEEEEcchhhHHHHHHHHHH-cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCc
Q 003924 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFRE-EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (786)
Q Consensus 257 ~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~-~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v 335 (786)
.++........++||||+++..++.++..|.. .++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|++
T Consensus 358 ~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v 437 (518)
T PLN00206 358 DILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRV 437 (518)
T ss_pred HHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccC
Confidence 88876544456899999999999999999975 68999999999999999999999999999999999999999999999
Q ss_pred ceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCC
Q 003924 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (786)
Q Consensus 336 ~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p 393 (786)
++||+||+|.++..|+||+||+||+|..|.+++|+++++...+.++...+...-...|
T Consensus 438 ~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~~~vp 495 (518)
T PLN00206 438 RQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSGAAIP 495 (518)
T ss_pred CEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999999999999999999999998888888777765544444
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.1e-59 Score=529.97 Aligned_cols=363 Identities=37% Similarity=0.609 Sum_probs=329.3
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC--CCCeEEEEEcC
Q 003924 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGVRALILSP 101 (786)
Q Consensus 24 ~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~--~~g~r~LIL~P 101 (786)
+|++|+|++.++++|..+||..|||+|.++||.++.|+|++++||||||||++|++|+++.+..... ..+.++|||+|
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~P 81 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTP 81 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECC
Confidence 6999999999999999999999999999999999999999999999999999999999998864321 23468999999
Q ss_pred cHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 102 treLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
|++||.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|++++.. ..+.+.++++|||||||+++
T Consensus 82 t~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~-~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 82 TRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE-ENFDCRAVETLILDEADRML 160 (434)
T ss_pred cHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCcCcccCCEEEEECHHHHh
Confidence 99999999999999999999999999999999988888888999999999999999886 56789999999999999999
Q ss_pred cCChHHHHHHHHhhcccCCceEEEeccCcH-HHHHHHHhcCCCCcceeeccccccCCCceeeeeecch-HHHHHHHHHHH
Q 003924 182 GMGFAEQLHKILGQLSENRQTLLFSATLPS-ALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLYMI 259 (786)
Q Consensus 182 ~~gf~~~l~~Il~~l~~~~q~ll~SATl~~-~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~-~~k~~~Ll~lL 259 (786)
+++|...+..+...++..+|+++||||++. .+..+....+.+|..+...........+.+.++.+.. ..+...|..++
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~l~ 240 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCHLL 240 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHHHH
Confidence 999999999999999999999999999985 5788888888899888776665555667676666653 55666666666
Q ss_pred HHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeE
Q 003924 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (786)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI 339 (786)
... ...++||||+++.+++.++..|...++.+..+||+|++.+|..+++.|++|+++||||||++++|||+|++++||
T Consensus 241 ~~~--~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI 318 (434)
T PRK11192 241 KQP--EVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVI 318 (434)
T ss_pred hcC--CCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEE
Confidence 532 467899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCC
Q 003924 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPI 389 (786)
Q Consensus 340 ~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~ 389 (786)
|||+|.++..|+||+||+||+|..|.+++|++..|...+..++.++..++
T Consensus 319 ~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~~~~~~~~ 368 (434)
T PRK11192 319 NFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIERYIEEPL 368 (434)
T ss_pred EECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999998887776554
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-60 Score=494.33 Aligned_cols=369 Identities=35% Similarity=0.605 Sum_probs=326.7
Q ss_pred CCCcc-CCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcC----CCCCeEE
Q 003924 22 SGGFE-SLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV----PQGGVRA 96 (786)
Q Consensus 22 ~~~f~-~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~----~~~g~r~ 96 (786)
.-+|+ .++-.++++..|.+.||..|||||.+++|.+|+|.|+++.|.||+|||++||+|.+-.+.... ...++.+
T Consensus 218 ~ctFddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~ 297 (629)
T KOG0336|consen 218 VCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGV 297 (629)
T ss_pred cCcHHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCce
Confidence 34564 457789999999999999999999999999999999999999999999999999987665432 3467899
Q ss_pred EEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCC
Q 003924 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (786)
Q Consensus 97 LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DE 176 (786)
|+++||||||.|+.-.+..+. +-+++..+++||.+..+|.+.+..+.+|+|+|||+|.++... ..+++.++-|||+||
T Consensus 298 lvl~ptreLalqie~e~~kys-yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~-n~i~l~siTYlVlDE 375 (629)
T KOG0336|consen 298 LVLTPTRELALQIEGEVKKYS-YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD-NVINLASITYLVLDE 375 (629)
T ss_pred EEEeccHHHHHHHHhHHhHhh-hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc-CeeeeeeeEEEEecc
Confidence 999999999999988777654 568899999999999999999999999999999999998876 478999999999999
Q ss_pred ccccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeecccccc-CCCceeeeeecchHHHHHHH
Q 003924 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKI-SPDLKLAFFTLRQEEKHAAL 255 (786)
Q Consensus 177 ah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~-~~~l~~~~~~v~~~~k~~~L 255 (786)
||+|++|||..++..|+-.+.+.+|+++.|||+|..+..++..|+++|.++.+..-... ...+.+.++...+.+|...+
T Consensus 376 ADrMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~ 455 (629)
T KOG0336|consen 376 ADRMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIV 455 (629)
T ss_pred hhhhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988876543322 23456666555566666555
Q ss_pred HHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCc
Q 003924 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (786)
Q Consensus 256 l~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v 335 (786)
-.++. ......++||||..+..++.|...|.-.|+.+..|||+-+|.+|+..++.|++|+++|||+||+++||||+|++
T Consensus 456 ~~f~~-~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~Di 534 (629)
T KOG0336|consen 456 QFFVA-NMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDI 534 (629)
T ss_pred HHHHH-hcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhc
Confidence 44554 45678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCC
Q 003924 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (786)
Q Consensus 336 ~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p 393 (786)
++|+|||||.+.+.|+||+||+||+|+.|++++|++.+|...+..|...|.+.-+..|
T Consensus 535 THV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevP 592 (629)
T KOG0336|consen 535 THVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVP 592 (629)
T ss_pred ceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCc
Confidence 9999999999999999999999999999999999999999888887766655544433
No 23
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-59 Score=494.34 Aligned_cols=363 Identities=34% Similarity=0.514 Sum_probs=327.4
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcC----CCCCeEEEE
Q 003924 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV----PQGGVRALI 98 (786)
Q Consensus 23 ~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~----~~~g~r~LI 98 (786)
-+|++|||++.++++|...||..||-||..+||++++|+|+++.|+||||||+||++|+++.|.... ...++.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 5899999999999999999999999999999999999999999999999999999999999986532 245789999
Q ss_pred EcCcHHHHHHHHHHHHHHccCC--CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCC
Q 003924 99 LSPTRDLALQTLKFTKELGRYT--DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (786)
Q Consensus 99 L~PtreLa~Q~~~~l~~l~~~~--~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DE 176 (786)
|+||+|||.|++.++..+...+ .++++-+....+.......+...|+|||+||++++.++.......+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 9999999999999999887665 36666666666655555777889999999999999999874346789999999999
Q ss_pred ccccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeecccccc-CCCceeeeeecchHHHHHHH
Q 003924 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKI-SPDLKLAFFTLRQEEKHAAL 255 (786)
Q Consensus 177 ah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~-~~~l~~~~~~v~~~~k~~~L 255 (786)
||.++..||.+.+..+...+|+..|++|||||+.+.+..+-..++++|+++.+...... +..+.++++.|...+|...+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999888765543 46788888999999999888
Q ss_pred HHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc----------
Q 003924 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV---------- 325 (786)
Q Consensus 256 l~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv---------- 325 (786)
..+++-.+ -.+++|||+||.+.|..+.-+|...|+..++++|.|+...|..+++.|..|-++||||||.
T Consensus 259 yallKL~L-I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee 337 (569)
T KOG0346|consen 259 YALLKLRL-IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEE 337 (569)
T ss_pred HHHHHHHH-hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhcc
Confidence 88887543 2578999999999999999999999999999999999999999999999999999999992
Q ss_pred -------------------------cccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHH
Q 003924 326 -------------------------AARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380 (786)
Q Consensus 326 -------------------------~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~ 380 (786)
++||||+..|.+|||||+|.+++.|+||+|||||++++|.+++|+.|.+......
T Consensus 338 ~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~ 417 (569)
T KOG0346|consen 338 VKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKES 417 (569)
T ss_pred ccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhH
Confidence 2799999999999999999999999999999999999999999999999887777
Q ss_pred HHHHhc
Q 003924 381 LHLFLS 386 (786)
Q Consensus 381 l~~~l~ 386 (786)
++.++.
T Consensus 418 le~~~~ 423 (569)
T KOG0346|consen 418 LESILK 423 (569)
T ss_pred HHHHHh
Confidence 766554
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1e-57 Score=523.75 Aligned_cols=366 Identities=34% Similarity=0.582 Sum_probs=333.9
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCC-----CCeEE
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-----GGVRA 96 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~-----~g~r~ 96 (786)
...|.+++|++.++.+|..+||..|||+|.++||.++.|+|+|+.++||||||++|++|+++.+...... ...++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 3579999999999999999999999999999999999999999999999999999999999998764321 25789
Q ss_pred EEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHc-CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeC
Q 003924 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (786)
Q Consensus 97 LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~D 175 (786)
|||+||++||.|+++.+..+....++.+..++||.+...+...+. ..++|+|+||++|+.++.. ..+.++++++||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~-~~~~l~~l~~lViD 244 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQR-GEVHLDMVEVMVLD 244 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCcccccCceEEec
Confidence 999999999999999999999999999999999988887777664 5799999999999988876 36778999999999
Q ss_pred CccccccCChHHHHHHHHhhccc--CCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHH
Q 003924 176 EADCLFGMGFAEQLHKILGQLSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA 253 (786)
Q Consensus 176 Eah~l~~~gf~~~l~~Il~~l~~--~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~ 253 (786)
|||++++++|...+..|+..++. .+|++++|||++..+..++..++.+|..+.+.........+.+.++.+...++..
T Consensus 245 Eah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~ 324 (475)
T PRK01297 245 EADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYK 324 (475)
T ss_pred hHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHH
Confidence 99999999999999999998864 5799999999999999999999999988877776666667777777777778888
Q ss_pred HHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCC
Q 003924 254 ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (786)
Q Consensus 254 ~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp 333 (786)
.|..++... ...++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|++.|||||+++++|||||
T Consensus 325 ~l~~ll~~~--~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 325 LLYNLVTQN--PWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHHhc--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCccc
Confidence 787777653 456899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCC
Q 003924 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (786)
Q Consensus 334 ~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~ 390 (786)
++++||+|++|.+...|+||+||+||.|+.|.+++|++.+|..++..++.+++..+.
T Consensus 403 ~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~~~~~~~~ 459 (475)
T PRK01297 403 GISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEELLGRKIS 459 (475)
T ss_pred CCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999999999999999999999999999998874
No 25
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-59 Score=511.66 Aligned_cols=371 Identities=35% Similarity=0.558 Sum_probs=341.0
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC------C--CC
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP------Q--GG 93 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~------~--~g 93 (786)
.++|.+-.|.+.+...+...||..|||+|+.+||.|..|+|.+++|+||||||.|||+|+++.+..... . ..
T Consensus 73 i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~ 152 (482)
T KOG0335|consen 73 IPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVY 152 (482)
T ss_pred cccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCC
Confidence 347888889999999999999999999999999999999999999999999999999999999976432 1 24
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEE
Q 003924 94 VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVV 173 (786)
Q Consensus 94 ~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV 173 (786)
+++|||+||||||.|+++..+.|.....+.+...+||.+...+...+..+++|+|||||+|.+++.. ..+.+.++.++|
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~-g~i~l~~~k~~v 231 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER-GKISLDNCKFLV 231 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc-ceeehhhCcEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999987 689999999999
Q ss_pred eCCcccccc-CChHHHHHHHHhhccc----CCceEEEeccCcHHHHHHHHhcCCC-CcceeeccccccCCCceeeeeecc
Q 003924 174 FDEADCLFG-MGFAEQLHKILGQLSE----NRQTLLFSATLPSALAEFAKAGLRD-PHLVRLDVDTKISPDLKLAFFTLR 247 (786)
Q Consensus 174 ~DEah~l~~-~gf~~~l~~Il~~l~~----~~q~ll~SATl~~~l~~~~~~~l~~-p~~i~~~~~~~~~~~l~~~~~~v~ 247 (786)
|||||+|++ |+|..++..|+..... .+|++|||||.|..+..++..++.+ +.++.+..-.....++.+.+..|.
T Consensus 232 LDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~ 311 (482)
T KOG0335|consen 232 LDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVN 311 (482)
T ss_pred ecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeec
Confidence 999999999 9999999999998754 7899999999999999999888886 888888888888899999999999
Q ss_pred hHHHHHHHHHHHHHhcc--CCC-----cEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEE
Q 003924 248 QEEKHAALLYMIREHIS--SDQ-----QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320 (786)
Q Consensus 248 ~~~k~~~Ll~lL~~~~~--~~~-----k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~IL 320 (786)
..+|...|+.+|..... ... .++|||.|+..|..+..+|...++++..+||...|.+|...++.|++|.+.||
T Consensus 312 ~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvl 391 (482)
T KOG0335|consen 312 EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVL 391 (482)
T ss_pred chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCcceE
Confidence 99999999999986541 123 79999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCC
Q 003924 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (786)
Q Consensus 321 VaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p 393 (786)
|||+|++||||||+|++|||||+|.+..+|+||+|||||+|+.|.+.+|+...+......|..++...-...|
T Consensus 392 VaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ea~q~vP 464 (482)
T KOG0335|consen 392 VATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILTEANQEVP 464 (482)
T ss_pred EEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHHHHhcccCc
Confidence 9999999999999999999999999999999999999999999999999997777777777776655544444
No 26
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=2.2e-60 Score=493.48 Aligned_cols=368 Identities=35% Similarity=0.592 Sum_probs=335.5
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhc------CCCCCeE
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQH------VPQGGVR 95 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~------~~~~g~r 95 (786)
.++|-+|.++..+++.|+++|+..|||||.+.+|.+++|+|.++.|-||||||++|++|++-...+. ....|+-
T Consensus 169 IksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~ 248 (610)
T KOG0341|consen 169 IKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPY 248 (610)
T ss_pred hhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCe
Confidence 5789999999999999999999999999999999999999999999999999999999997543321 2346889
Q ss_pred EEEEcCcHHHHHHHHHHHHHHcc------CCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCce
Q 003924 96 ALILSPTRDLALQTLKFTKELGR------YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (786)
Q Consensus 96 ~LIL~PtreLa~Q~~~~l~~l~~------~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l 169 (786)
+|||||+||||.|+++.+..+.. ...++..+++||....+|...+..+..|+|+|||||.+++.. ..+++.-+
T Consensus 249 gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-K~~sLd~C 327 (610)
T KOG0341|consen 249 GLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-KIMSLDAC 327 (610)
T ss_pred eEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-hhccHHHH
Confidence 99999999999999998877643 345789999999999999999999999999999999999987 47889999
Q ss_pred eeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchH
Q 003924 170 EYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE 249 (786)
Q Consensus 170 ~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~ 249 (786)
.|+++||||||.+|||...+..|+..+...+|++|||||+|..+..|++..|-.|+.+.+......+-++-+.+..+..+
T Consensus 328 RyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkqE 407 (610)
T KOG0341|consen 328 RYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQE 407 (610)
T ss_pred HHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999998888888888888888888
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccc
Q 003924 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (786)
Q Consensus 250 ~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arG 329 (786)
.|.-.|+..|+.. ..++||||..+..++.++++|--.|+.++.|||+-+|++|...++.|+.|+-+|||+|||++.|
T Consensus 408 aKiVylLeCLQKT---~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKG 484 (610)
T KOG0341|consen 408 AKIVYLLECLQKT---SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKG 484 (610)
T ss_pred hhhhhHHHHhccC---CCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhcc
Confidence 8888888877654 6799999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEec-ccHHHHHHHHHHhcCCCCCCC
Q 003924 330 IDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS-EDMAYLLDLHLFLSKPIRAAP 393 (786)
Q Consensus 330 lDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~-~e~~~l~~l~~~l~~~~~~~p 393 (786)
+|+|++.+|||||+|....+|+||+||+||.|+.|.+..|+.. .+...+.||...|-..-+..|
T Consensus 485 LDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL~EakQ~vP 549 (610)
T KOG0341|consen 485 LDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLLQEAKQEVP 549 (610)
T ss_pred CCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999999999999999999999999997 466777787766654433333
No 27
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-60 Score=510.49 Aligned_cols=366 Identities=34% Similarity=0.533 Sum_probs=322.3
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcC---------
Q 003924 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHV--------- 89 (786)
Q Consensus 20 ~~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g-~dvvl~a~TGSGKT~afllpile~L~~~~--------- 89 (786)
-.-..|..|+||.+++++|..+||..|||||..+||.++.| .||++.|.||||||+||-|||++.+...+
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34567999999999999999999999999999999999999 79999999999999999999999664322
Q ss_pred CCCCeE--EEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCC--C
Q 003924 90 PQGGVR--ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM--S 165 (786)
Q Consensus 90 ~~~g~r--~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l--~ 165 (786)
...+++ +||++||||||.|+..-+..+...+++++..++||.....|.+.+...|+|||+|||||+.++.+.+.+ .
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 123455 999999999999999999999999999999999999999999999999999999999999999884432 4
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcc-----cCCceEEEeccCcHH---------------------HHHHHH-
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLS-----ENRQTLLFSATLPSA---------------------LAEFAK- 218 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~-----~~~q~ll~SATl~~~---------------------l~~~~~- 218 (786)
+..+.++|+||+|||.+.|+.+.+..|+..+. ..+|++.||||+.-. +..++.
T Consensus 338 ~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ 417 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKK 417 (731)
T ss_pred hhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHH
Confidence 88899999999999999999999999998875 468999999998421 222222
Q ss_pred hcC-CCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeec
Q 003924 219 AGL-RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCY 297 (786)
Q Consensus 219 ~~l-~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lh 297 (786)
.++ ..|.+|.+.........+.-..+.|+..+|.-.|.++|..+ .+++|||||+++.+..|+-+|...++....||
T Consensus 418 ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry---PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LH 494 (731)
T KOG0347|consen 418 IGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRY---PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLH 494 (731)
T ss_pred hCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeec---CCceEEEechHHHHHHHHHHHhhcCCCCchhh
Confidence 233 45677777666666666666667777778887788887765 68999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHH
Q 003924 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (786)
Q Consensus 298 g~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~ 377 (786)
..|.|.+|...+++|++....|||||||||||||||+|++||+|..|.+.+.|+||.|||+||+..|.++.|+.|.|+..
T Consensus 495 A~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 495 ASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGP 574 (731)
T ss_pred HHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHhcCC
Q 003924 378 LLDLHLFLSKP 388 (786)
Q Consensus 378 l~~l~~~l~~~ 388 (786)
+..|..-|.+.
T Consensus 575 ~~KL~ktL~k~ 585 (731)
T KOG0347|consen 575 LKKLCKTLKKK 585 (731)
T ss_pred HHHHHHHHhhc
Confidence 88888777653
No 28
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-58 Score=489.82 Aligned_cols=363 Identities=37% Similarity=0.577 Sum_probs=332.1
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcC---CCCCeEE
Q 003924 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRA 96 (786)
Q Consensus 20 ~~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~---~~~g~r~ 96 (786)
+-..+|+.+|++..|..++.+.-|.+|||+|.+++|..+.|+||+..|.||||||.||+.|++-.+.... +..|+-+
T Consensus 220 rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~ 299 (731)
T KOG0339|consen 220 RPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIG 299 (731)
T ss_pred CCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeE
Confidence 3457899999999999999999999999999999999999999999999999999999999998876432 3568899
Q ss_pred EEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCC
Q 003924 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (786)
Q Consensus 97 LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DE 176 (786)
||||||||||.|++.+++.|++..++++++++||.+..+|+..|..+|.|||||||||++++.- ...++.++.||||||
T Consensus 300 vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV~DE 378 (731)
T KOG0339|consen 300 VILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM-KATNLSRVSYLVLDE 378 (731)
T ss_pred EEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh-hcccceeeeEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999998875 678999999999999
Q ss_pred ccccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecc-hHHHHHHH
Q 003924 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHAAL 255 (786)
Q Consensus 177 ah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~-~~~k~~~L 255 (786)
||+|++|||..++..|...+.+.+|+|+||||++..++.+++..|.+|+.+....-.....++.+.+..|. ...|..-|
T Consensus 379 adrmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl 458 (731)
T KOG0339|consen 379 ADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWL 458 (731)
T ss_pred hhhhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987665544445566777666665 45677777
Q ss_pred HHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCc
Q 003924 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (786)
Q Consensus 256 l~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v 335 (786)
+..|-+.. ..+++|||+.-+..++.++..|.-.++.|..+||+++|.+|.+++..|+.+...|||+||+++||+|||.+
T Consensus 459 ~~~L~~f~-S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~i 537 (731)
T KOG0339|consen 459 LRHLVEFS-SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSI 537 (731)
T ss_pred HHHhhhhc-cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCcccc
Confidence 77776653 56789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHH
Q 003924 336 DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384 (786)
Q Consensus 336 ~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~ 384 (786)
..|||||+-.+++.+.||+||+||+|..|.+|+|+++.|..+.-.|-.-
T Consensus 538 kTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnn 586 (731)
T KOG0339|consen 538 KTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNN 586 (731)
T ss_pred ceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHH
Confidence 9999999999999999999999999999999999999998766555433
No 29
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-57 Score=522.03 Aligned_cols=372 Identities=35% Similarity=0.600 Sum_probs=347.0
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC---CCCeEEE
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP---QGGVRAL 97 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~---~~g~r~L 97 (786)
--.+|...|++..++..|+++||..|||||.+|||.|++|+|||+.|.||||||++|++|++.++....+ ..|+-+|
T Consensus 363 pv~sW~q~gl~~~il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~l 442 (997)
T KOG0334|consen 363 PVTSWTQCGLSSKILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIAL 442 (997)
T ss_pred ccchHhhCCchHHHHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEE
Confidence 3568999999999999999999999999999999999999999999999999999999999977765432 4589999
Q ss_pred EEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhcc--CCCCCceeeEEeC
Q 003924 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE--DMSLKSVEYVVFD 175 (786)
Q Consensus 98 IL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~--~l~l~~l~~vV~D 175 (786)
|++|||||+.|+.+++..|...+++++++++||.....++..+..++.|+|||||++++++-... -.++..+.+||+|
T Consensus 443 i~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~d 522 (997)
T KOG0334|consen 443 ILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLD 522 (997)
T ss_pred EEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeec
Confidence 99999999999999999999999999999999999999999999999999999999999886532 1345556699999
Q ss_pred CccccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecc-hHHHHHH
Q 003924 176 EADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHAA 254 (786)
Q Consensus 176 Eah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~-~~~k~~~ 254 (786)
|||+|++|||.+++..|+..+++.+|+++||||+|..+..+++..+..|+.+.+.........+.+.+..+. ..+|+..
T Consensus 523 eaDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~k 602 (997)
T KOG0334|consen 523 EADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLK 602 (997)
T ss_pred hhhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHH
Confidence 999999999999999999999999999999999999999999999999999988888888889999999998 8999999
Q ss_pred HHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCC
Q 003924 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL 334 (786)
Q Consensus 255 Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~ 334 (786)
|+.+|.+... ..++||||..+..|+.+...|...|+.|..+||+.+|.+|..++..|+++.+.+||||++++||||++.
T Consensus 603 L~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~ 681 (997)
T KOG0334|consen 603 LLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKE 681 (997)
T ss_pred HHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhccccccc
Confidence 9999998754 789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCC
Q 003924 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (786)
Q Consensus 335 v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p 393 (786)
+.+|||||+|.....|+||+|||||+|+.|.|++|++|++..|..+|..++...-.+.|
T Consensus 682 l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~~~~~~~P 740 (997)
T KOG0334|consen 682 LILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALELSKQPVP 740 (997)
T ss_pred ceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHHhccCCCc
Confidence 99999999999999999999999999999999999999999999999999854444445
No 30
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.4e-55 Score=496.04 Aligned_cols=367 Identities=31% Similarity=0.570 Sum_probs=328.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P 101 (786)
-.+|++|||++.++++|...||..|||+|.++|+.++.|+|++++||||||||++|++|+++.+... ..+.++|||+|
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~--~~~~~~lil~P 104 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD--LNACQALILAP 104 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC--CCCceEEEECC
Confidence 4789999999999999999999999999999999999999999999999999999999999887532 24678999999
Q ss_pred cHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 102 treLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
|++|+.|+.+.+..++...++.+..++||.....++..+..+++|+|+||++|.+++.. ..+.++++++|||||||+++
T Consensus 105 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvViDEah~~~ 183 (401)
T PTZ00424 105 TRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFILDEADEML 183 (401)
T ss_pred CHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHh-CCcccccccEEEEecHHHHH
Confidence 99999999999999998888999999999988888888888899999999999998876 45779999999999999999
Q ss_pred cCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecch-HHHHHHHHHHHH
Q 003924 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLYMIR 260 (786)
Q Consensus 182 ~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~-~~k~~~Ll~lL~ 260 (786)
+.+|...+..++..++...|++++|||+|+.+..+...++.+|..+.+.........+.+.+..+.. ..+...+..++.
T Consensus 184 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 263 (401)
T PTZ00424 184 SRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYE 263 (401)
T ss_pred hcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998888776665544444555666665554 335555665555
Q ss_pred HhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEe
Q 003924 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (786)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~ 340 (786)
.. ...++||||+|+.+++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+
T Consensus 264 ~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~ 341 (401)
T PTZ00424 264 TL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN 341 (401)
T ss_pred hc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE
Confidence 43 3568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCC
Q 003924 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (786)
Q Consensus 341 ~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p 393 (786)
||+|.+...|+||+||+||.|+.|.|++|+++++..++..++..+...+...+
T Consensus 342 ~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~~~~~~~~ 394 (401)
T PTZ00424 342 YDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYNTQIEEMP 394 (401)
T ss_pred ECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHCCcccccC
Confidence 99999999999999999999999999999999999999999888877665544
No 31
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.6e-55 Score=458.36 Aligned_cols=366 Identities=35% Similarity=0.603 Sum_probs=344.0
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 23 ~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
.+|++|+|+++|+++|...||..|+.||+.||+.+..|.|+++.+++|+|||.+|++++++.+.- ......+|+++||
T Consensus 26 dsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~--~~ke~qalilaPt 103 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM--SVKETQALILAPT 103 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc--chHHHHHHHhcch
Confidence 38999999999999999999999999999999999999999999999999999999999998743 2345679999999
Q ss_pred HHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHc-CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 103 reLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
||||.|+.++...++...+..+..++||.....+...+. ..+.|+|+|||++++++... .+....+.++|+||||.++
T Consensus 104 reLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~-~l~~~~iKmfvlDEaDEmL 182 (397)
T KOG0327|consen 104 RELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG-SLSTDGIKMFVLDEADEML 182 (397)
T ss_pred HHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc-cccccceeEEeecchHhhh
Confidence 999999999999999999999999999999886655554 46999999999999999874 7888889999999999999
Q ss_pred cCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHH
Q 003924 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261 (786)
Q Consensus 182 ~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~ 261 (786)
..||.+++..|...+|.+.|++++|||+|.++.+..+.++.+|+.+.+..+......+.+.|..+..++|...|..+..
T Consensus 183 s~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~k~~~l~dl~~- 261 (397)
T KOG0327|consen 183 SRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEEKLDTLCDLYR- 261 (397)
T ss_pred ccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccccccHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999888888889999999999899999988887
Q ss_pred hccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEec
Q 003924 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINW 341 (786)
Q Consensus 262 ~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~ 341 (786)
.-.+.+|||||+..+..+...|...+..++.+||+|.+..|..++..|+.|..+|||+|+.++||+|+..++.||||
T Consensus 262 ---~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slviny 338 (397)
T KOG0327|consen 262 ---RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNY 338 (397)
T ss_pred ---hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeee
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCCCH
Q 003924 342 DFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (786)
Q Consensus 342 d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~ 395 (786)
++|....+|+||+||+||.|++|.++.+++.++...+.+++.|+..++...|..
T Consensus 339 dlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~~i~e~p~~ 392 (397)
T KOG0327|consen 339 DLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNTPIEELPSN 392 (397)
T ss_pred ccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCCcceecccc
Confidence 999999999999999999999999999999999999999999999988877753
No 32
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-54 Score=449.80 Aligned_cols=360 Identities=31% Similarity=0.533 Sum_probs=322.6
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEE
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g--~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL 99 (786)
..+|++|+|.|+++++|..|+|..|+.||..|+|.+|.. ++.+.++..|+|||+||++.|+.+..-.. .-+++++|
T Consensus 89 ~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~--~~PQ~iCL 166 (477)
T KOG0332|consen 89 AKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDV--VVPQCICL 166 (477)
T ss_pred cccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccc--cCCCceee
Confidence 468999999999999999999999999999999999986 78999999999999999999999876542 35678999
Q ss_pred cCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccc
Q 003924 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (786)
Q Consensus 100 ~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~ 179 (786)
+||||||.|+.+++.+.|+++++++.+.+.|.....-. .-...|+|+|||.+++++.....+++..+.++|+||||.
T Consensus 167 aPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~---~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~ 243 (477)
T KOG0332|consen 167 APTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGN---KLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADV 243 (477)
T ss_pred CchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccCC---cchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhh
Confidence 99999999999999999999999999888776222110 113569999999999999886788999999999999999
Q ss_pred ccc-CChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecch-HHHHHHHHH
Q 003924 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALLY 257 (786)
Q Consensus 180 l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~-~~k~~~Ll~ 257 (786)
|++ .||.++-..|...+|.++|+++||||....+..|+...+.++..+.+..+....+.+.+.|..|.. .+|+..|..
T Consensus 244 Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~ 323 (477)
T KOG0332|consen 244 MIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVN 323 (477)
T ss_pred hhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHH
Confidence 886 579999999999999999999999999999999999999999999999999888999999988865 568888887
Q ss_pred HHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcce
Q 003924 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (786)
Q Consensus 258 lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~ 337 (786)
+..-. .-++.||||.|+..+..++..|...|+.+..+||+|.-.+|..++..|+.|...|||+|+|+|||||++.|.+
T Consensus 324 lyg~~--tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~ 401 (477)
T KOG0332|consen 324 LYGLL--TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSV 401 (477)
T ss_pred HHhhh--hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEE
Confidence 54422 4578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecCCC------CCHhHHHHHhhccccCCCccEEEEEEeccc-HHHHHHHHHHhcCC
Q 003924 338 VINWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTSED-MAYLLDLHLFLSKP 388 (786)
Q Consensus 338 VI~~d~P------~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e-~~~l~~l~~~l~~~ 388 (786)
|||||+| +++..|+||+||+||.|+.|.++.|+...+ ...+..++.++...
T Consensus 402 VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F~~~ 459 (477)
T KOG0332|consen 402 VVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHFNMK 459 (477)
T ss_pred EEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHHhhc
Confidence 9999999 688999999999999999999999998754 55666777777543
No 33
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-52 Score=443.49 Aligned_cols=358 Identities=31% Similarity=0.457 Sum_probs=303.5
Q ss_pred CccCCCCCHHH----------HHHHHHCCCCCChHHHHHHHHHHHc---------CCcEEEEcCCCChHHHHHHHHHHHH
Q 003924 24 GFESLNLSPNV----------FRAIKRKGYKVPTPIQRKTMPLILS---------GADVVAMARTGSGKTAAFLVPMLQR 84 (786)
Q Consensus 24 ~f~~lgLs~~l----------l~~l~~~g~~~ptpiQ~~aip~il~---------g~dvvl~a~TGSGKT~afllpile~ 84 (786)
.|+.++++... ..+|..++++...|+|..++|.++. .+|+++.||||||||++|.+|+++.
T Consensus 128 ~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~ 207 (620)
T KOG0350|consen 128 IFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQL 207 (620)
T ss_pred eeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHH
Confidence 35566665544 4458899999999999999999963 4799999999999999999999988
Q ss_pred HhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcC-CC----CEEEECcHHHHHHHh
Q 003924 85 LNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ-NP----DIIIATPGRLMHHLS 159 (786)
Q Consensus 85 L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~-~~----dIiV~Tpgrll~~l~ 159 (786)
|.... ....|+|||+||++|+.|+++.|..+...+++.|+.+.|..+.+.....+.+ .+ ||+|+|||||++|+.
T Consensus 208 L~~R~-v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~ 286 (620)
T KOG0350|consen 208 LSSRP-VKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLN 286 (620)
T ss_pred HccCC-ccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhcc
Confidence 87653 3458999999999999999999999999999999999999988887777754 34 899999999999999
Q ss_pred hccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcc----------------------------------cCCceEEE
Q 003924 160 EVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS----------------------------------ENRQTLLF 205 (786)
Q Consensus 160 ~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~----------------------------------~~~q~ll~ 205 (786)
.+..++|+++.|+||||||||++..|...+..++..+. +..+-++|
T Consensus 287 ~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~ 366 (620)
T KOG0350|consen 287 NTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVF 366 (620)
T ss_pred CCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhc
Confidence 88899999999999999999998766665555544321 12246789
Q ss_pred eccCcHHHHHHHHhcCCCCcceeec----cccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHH
Q 003924 206 SATLPSALAEFAKAGLRDPHLVRLD----VDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEF 281 (786)
Q Consensus 206 SATl~~~l~~~~~~~l~~p~~i~~~----~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~ 281 (786)
|||+...-..+...-+..|.+..+. .....++.+.+.++.+....+.-.+..+|... +..++|+|+++...+..
T Consensus 367 satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~--k~~r~lcf~~S~~sa~R 444 (620)
T KOG0350|consen 367 SATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSN--KLNRTLCFVNSVSSANR 444 (620)
T ss_pred chhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHh--hcceEEEEecchHHHHH
Confidence 9998766666777778888766655 23345566777777777777777888888754 67899999999999999
Q ss_pred HHHHHH----HcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhcc
Q 003924 282 LNVLFR----EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRA 357 (786)
Q Consensus 282 l~~~L~----~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~ 357 (786)
++..|. .....+..+.|.++...|...+..|..|++.||||||+++||||+.++++|||||+|.+...|+||+|||
T Consensus 445 l~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRT 524 (620)
T KOG0350|consen 445 LAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRT 524 (620)
T ss_pred HHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhccc
Confidence 999887 3356778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccEEEEEEecccHHHHHHHHHH
Q 003924 358 ARAGRTGTAFSFVTSEDMAYLLDLHLF 384 (786)
Q Consensus 358 gR~G~~G~ai~lv~~~e~~~l~~l~~~ 384 (786)
||||+.|.||.+++..+...|..+-.-
T Consensus 525 ARAgq~G~a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 525 ARAGQDGYAITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred ccccCCceEEEeeccccchHHHHHHHH
Confidence 999999999999999998877766443
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.8e-50 Score=481.52 Aligned_cols=354 Identities=21% Similarity=0.300 Sum_probs=280.3
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHH
Q 003924 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (786)
Q Consensus 30 Ls~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~ 109 (786)
|++.+.++|..+||..|||+|.++||.++.|+|+++.+|||||||+||++|+++.+... .+.++|||+||++||.|+
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~---~~~~aL~l~PtraLa~q~ 97 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD---PRATALYLAPTKALAADQ 97 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC---CCcEEEEEcChHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999998753 467899999999999999
Q ss_pred HHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhcc---CCCCCceeeEEeCCccccccCChH
Q 003924 110 LKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEADCLFGMGFA 186 (786)
Q Consensus 110 ~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~---~l~l~~l~~vV~DEah~l~~~gf~ 186 (786)
...++.++ ..++++..+.|+.+ ..+...+..+++|||+||++|...+.... ...++++++|||||||.+.+. |.
T Consensus 98 ~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~-fg 174 (742)
T TIGR03817 98 LRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGV-FG 174 (742)
T ss_pred HHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCc-cH
Confidence 99999987 45788877766655 44555667789999999999865332210 122789999999999999763 66
Q ss_pred HHHHHHHhh-------cccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecc-----h------
Q 003924 187 EQLHKILGQ-------LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-----Q------ 248 (786)
Q Consensus 187 ~~l~~Il~~-------l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~-----~------ 248 (786)
..+..++.. .+..+|+++||||+++... ++...+..|..+ ++.+..........++... .
T Consensus 175 ~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~-i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 252 (742)
T TIGR03817 175 SHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVA-VTEDGSPRGARTVALWEPPLTELTGENGAPV 252 (742)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEE-ECCCCCCcCceEEEEecCCcccccccccccc
Confidence 665555444 3567899999999998754 666677776443 3333322222222222111 0
Q ss_pred -HHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc--------CCCceeecCCCCHHHHHHHHHHHhcCCcEE
Q 003924 249 -EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--------GLEPSVCYGDMDQDARKIHVSRFRARKTMF 319 (786)
Q Consensus 249 -~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~--------g~~v~~lhg~l~q~~R~~~l~~F~~g~~~I 319 (786)
.........++...+..+.++||||+|+..++.++..|... +..+..+||++.+++|..+++.|++|++++
T Consensus 253 r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~v 332 (742)
T TIGR03817 253 RRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLG 332 (742)
T ss_pred ccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceE
Confidence 00011222233333335689999999999999999988763 567889999999999999999999999999
Q ss_pred EEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEe--cccHHHHHHHHHHhcCCCCC
Q 003924 320 LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT--SEDMAYLLDLHLFLSKPIRA 391 (786)
Q Consensus 320 LVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~--~~e~~~l~~l~~~l~~~~~~ 391 (786)
|||||++++|||||++++||+|++|.+...|+||+||+||+|+.|.+++++. +.|..++...+.++..++..
T Consensus 333 LVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~~~~~~e~ 406 (742)
T TIGR03817 333 VATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEALFDRPVEA 406 (742)
T ss_pred EEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHHhcCCCcc
Confidence 9999999999999999999999999999999999999999999999999987 45666777777777766544
No 35
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.8e-50 Score=441.21 Aligned_cols=355 Identities=30% Similarity=0.491 Sum_probs=319.7
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~ 100 (786)
-..+|++|-|..+++.+|.+.+|..||++|..|||+++.+-|.|++|..|+|||++|.+.+++.|.... ..++++||+
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~--~~~q~~Iv~ 100 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRS--SHIQKVIVT 100 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCccc--CcceeEEEe
Confidence 357899999999999999999999999999999999999999999999999999999999999887542 456899999
Q ss_pred CcHHHHHHHHHHHHHHcc-CCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccc
Q 003924 101 PTRDLALQTLKFTKELGR-YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (786)
Q Consensus 101 PtreLa~Q~~~~l~~l~~-~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~ 179 (786)
||||||.|+.+.+..++. +.|++|.+++||+........+ +.+.|+|+||||+.+++.. ..++.+++.++|+||||.
T Consensus 101 PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-k~~rIvIGtPGRi~qL~el-~~~n~s~vrlfVLDEADk 178 (980)
T KOG4284|consen 101 PTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-KQTRIVIGTPGRIAQLVEL-GAMNMSHVRLFVLDEADK 178 (980)
T ss_pred cchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-hhceEEecCchHHHHHHHh-cCCCccceeEEEeccHHh
Confidence 999999999999999885 5799999999999887776555 4578999999999998876 689999999999999999
Q ss_pred ccc-CChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchH--------H
Q 003924 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE--------E 250 (786)
Q Consensus 180 l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~--------~ 250 (786)
|.+ ..|..++..|+..+|..+|++.||||.|..+.+.+..++.+|.+|++..+....-.+.++++.+... .
T Consensus 179 L~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrl 258 (980)
T KOG4284|consen 179 LMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRL 258 (980)
T ss_pred hhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHH
Confidence 998 5699999999999999999999999999999999999999999999998887777888877766543 2
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeccccccc
Q 003924 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (786)
Q Consensus 251 k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGl 330 (786)
|...|-+++... +-.+.||||+..-.|+-++.+|...|+.|.+|.|.|+|.+|..+++.+++-.++|||+||..+|||
T Consensus 259 klq~L~~vf~~i--py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGI 336 (980)
T KOG4284|consen 259 KLQKLTHVFKSI--PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGI 336 (980)
T ss_pred HHHHHHHHHhhC--chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccC
Confidence 555555555543 467899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEeccc-HHHHHHH
Q 003924 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED-MAYLLDL 381 (786)
Q Consensus 331 DIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e-~~~l~~l 381 (786)
|-|.+++|||.|.|.+..+|.|||||+||.|..|.++.|+.... ...|..+
T Consensus 337 Da~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 337 DADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred CccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchhhhhhHHH
Confidence 99999999999999999999999999999999999999998754 3554444
No 36
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-49 Score=430.23 Aligned_cols=357 Identities=33% Similarity=0.474 Sum_probs=312.4
Q ss_pred CCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC---CCCeEEEEEcCcHHH
Q 003924 29 NLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP---QGGVRALILSPTRDL 105 (786)
Q Consensus 29 gLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~---~~g~r~LIL~PtreL 105 (786)
..++.++..+...||..|||+|.+|||.++.+++++.|||||||||++|++|++.+|..+.. ..|.+++|+.||++|
T Consensus 142 ~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreL 221 (593)
T KOG0344|consen 142 SMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTREL 221 (593)
T ss_pred hhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHH
Confidence 46888999999999999999999999999999999999999999999999999999987653 568999999999999
Q ss_pred HHHHHHHHHHHc--cCCCCeEEEEEcCCChhHHHHH-HcCCCCEEEECcHHHHHHHhhc-cCCCCCceeeEEeCCccccc
Q 003924 106 ALQTLKFTKELG--RYTDLRISLLVGGDSMESQFEE-LAQNPDIIIATPGRLMHHLSEV-EDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 106 a~Q~~~~l~~l~--~~~~l~v~~l~gg~~~~~~~~~-l~~~~dIiV~Tpgrll~~l~~~-~~l~l~~l~~vV~DEah~l~ 181 (786)
|.|++.++.++. ..+++++..+............ ....++|+|+||-++..++... ..+++..+.++|+||||+++
T Consensus 222 a~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lf 301 (593)
T KOG0344|consen 222 AAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLF 301 (593)
T ss_pred HHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhh
Confidence 999999999998 6677766655544322221111 1235889999999999888751 12679999999999999999
Q ss_pred cC-ChHHHHHHHHhhcc-cCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeec-chHHHHHHHHHH
Q 003924 182 GM-GFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL-RQEEKHAALLYM 258 (786)
Q Consensus 182 ~~-gf~~~l~~Il~~l~-~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v-~~~~k~~~Ll~l 258 (786)
+. +|..++..|+..+. ++..+-+||||++..+++++...+.++..+.+.........+.+....| ....|..++..+
T Consensus 302 e~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~K~lA~rq~ 381 (593)
T KOG0344|consen 302 EPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKGKLLALRQL 381 (593)
T ss_pred ChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchhHHHHHHHH
Confidence 99 99999999998764 4667789999999999999999999998888877766666676665544 567899999999
Q ss_pred HHHhccCCCcEEEEEcchhhHHHHHHHH-HHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcce
Q 003924 259 IREHISSDQQTLIFVSTKHHVEFLNVLF-REEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (786)
Q Consensus 259 L~~~~~~~~k~IVF~~t~~~ae~l~~~L-~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~ 337 (786)
+...+ ..++|||+.+.+.|..|+..| .-.++.+.++||..++.+|.+.+++|+.|++.|||||++++||+|+.++.+
T Consensus 382 v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~ 459 (593)
T KOG0344|consen 382 VASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNL 459 (593)
T ss_pred HhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcce
Confidence 98764 578999999999999999999 667899999999999999999999999999999999999999999999999
Q ss_pred eEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcC
Q 003924 338 VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSK 387 (786)
Q Consensus 338 VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~ 387 (786)
|||||+|.+...|+||+||+||+|+.|.||.|++..|++++.-+......
T Consensus 460 VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~ 509 (593)
T KOG0344|consen 460 VINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQ 509 (593)
T ss_pred EEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999998887665544
No 37
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.9e-46 Score=425.31 Aligned_cols=325 Identities=20% Similarity=0.317 Sum_probs=258.4
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccC
Q 003924 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (786)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~ 119 (786)
..||..|+|+|.++|+.++.|+|+++.+|||||||++|++|++.. +..+|||+||++|+.|+...+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~--------~~~~lVi~P~~~L~~dq~~~l~~~--- 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS--------DGITLVISPLISLMEDQVLQLKAS--- 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc--------CCcEEEEecHHHHHHHHHHHHHHc---
Confidence 369999999999999999999999999999999999999998852 346999999999999988888765
Q ss_pred CCCeEEEEEcCCChhHHHH---H-HcCCCCEEEECcHHHHHHHhhccCC-CCCceeeEEeCCccccccCC--hHHHHHH-
Q 003924 120 TDLRISLLVGGDSMESQFE---E-LAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMG--FAEQLHK- 191 (786)
Q Consensus 120 ~~l~v~~l~gg~~~~~~~~---~-l~~~~dIiV~Tpgrll~~l~~~~~l-~l~~l~~vV~DEah~l~~~g--f~~~l~~- 191 (786)
++.+..+.++....++.. . ..+.++|+++||+++.........+ ....+.+|||||||+++++| |...+..
T Consensus 75 -gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l 153 (470)
T TIGR00614 75 -GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKAL 153 (470)
T ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHH
Confidence 477777777766554332 2 2356899999999986433111123 56789999999999999887 5555444
Q ss_pred --HHhhcccCCceEEEeccCcHHHHHHHHhc--CCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCC
Q 003924 192 --ILGQLSENRQTLLFSATLPSALAEFAKAG--LRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQ 267 (786)
Q Consensus 192 --Il~~l~~~~q~ll~SATl~~~l~~~~~~~--l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~ 267 (786)
+...+ ++.+++++|||+++.+...+... +.+|.++..... .+++...... ........++.++... ..+.
T Consensus 154 ~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~---r~nl~~~v~~-~~~~~~~~l~~~l~~~-~~~~ 227 (470)
T TIGR00614 154 GSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD---RPNLYYEVRR-KTPKILEDLLRFIRKE-FKGK 227 (470)
T ss_pred HHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC---CCCcEEEEEe-CCccHHHHHHHHHHHh-cCCC
Confidence 33444 47889999999998876544443 445554433221 2233222211 1113455666666543 2456
Q ss_pred cEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCH
Q 003924 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKP 347 (786)
Q Consensus 268 k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~ 347 (786)
.+||||+|+.+++.++..|...|+.+..+||+|++.+|..+++.|+.|+++|||||+++++|||+|++++||+|++|.++
T Consensus 228 ~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~ 307 (470)
T TIGR00614 228 SGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSM 307 (470)
T ss_pred ceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhccccCCCccEEEEEEecccHHHHHHHH
Q 003924 348 KIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382 (786)
Q Consensus 348 ~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~ 382 (786)
..|+||+||+||.|..|.|++|+++.|...+..+.
T Consensus 308 ~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 308 ESYYQESGRAGRDGLPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred HHHHhhhcCcCCCCCCceEEEEechhHHHHHHHHH
Confidence 99999999999999999999999999988777653
No 38
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.9e-45 Score=435.89 Aligned_cols=342 Identities=22% Similarity=0.296 Sum_probs=265.9
Q ss_pred CCCccCCC--CCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEE
Q 003924 22 SGGFESLN--LSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (786)
Q Consensus 22 ~~~f~~lg--Ls~~ll~~l~~-~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LI 98 (786)
.+.|.+.+ .+..+...+.. .||..++|+|.++|+.++.|+|+++.+|||+|||+||++|++.. +..+||
T Consensus 434 ~~~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~--------~GiTLV 505 (1195)
T PLN03137 434 DKKWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC--------PGITLV 505 (1195)
T ss_pred CccccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc--------CCcEEE
Confidence 34566544 44555555554 69999999999999999999999999999999999999999853 346999
Q ss_pred EcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHc------CCCCEEEECcHHHHH---HHhhccCC-CCCc
Q 003924 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA------QNPDIIIATPGRLMH---HLSEVEDM-SLKS 168 (786)
Q Consensus 99 L~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~------~~~dIiV~Tpgrll~---~l~~~~~l-~l~~ 168 (786)
|+|+++|+.++...+.. .++.+..+.++....++...+. ..++|+|+||++|.. ++.....+ ....
T Consensus 506 ISPLiSLmqDQV~~L~~----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~ 581 (1195)
T PLN03137 506 ISPLVSLIQDQIMNLLQ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGL 581 (1195)
T ss_pred EeCHHHHHHHHHHHHHh----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccc
Confidence 99999999855444443 3588999999988777655442 578999999999853 12111112 2345
Q ss_pred eeeEEeCCccccccCC--hHHHHHHH--HhhcccCCceEEEeccCcHHHHHHHHhcCC--CCcceeeccccccCCCceee
Q 003924 169 VEYVVFDEADCLFGMG--FAEQLHKI--LGQLSENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLA 242 (786)
Q Consensus 169 l~~vV~DEah~l~~~g--f~~~l~~I--l~~l~~~~q~ll~SATl~~~l~~~~~~~l~--~p~~i~~~~~~~~~~~l~~~ 242 (786)
+.+|||||||++++|| |...+..+ +....+..++++||||++..+...+...+. ++.++.. ....+++ .
T Consensus 582 LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~---Sf~RpNL--~ 656 (1195)
T PLN03137 582 LARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ---SFNRPNL--W 656 (1195)
T ss_pred cceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec---ccCccce--E
Confidence 8899999999999998 66665543 333345789999999999988775555443 3332221 1122333 3
Q ss_pred eeecchHHH-HHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEE
Q 003924 243 FFTLRQEEK-HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (786)
Q Consensus 243 ~~~v~~~~k-~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILV 321 (786)
|..+....+ ...+..++.... .+..+||||.|+..|+.++..|...|+.+..+||+|++.+|..+++.|..|+++|||
T Consensus 657 y~Vv~k~kk~le~L~~~I~~~~-~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLV 735 (1195)
T PLN03137 657 YSVVPKTKKCLEDIDKFIKENH-FDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIIC 735 (1195)
T ss_pred EEEeccchhHHHHHHHHHHhcc-cCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEE
Confidence 333333222 345556665432 356799999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHH
Q 003924 322 VTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (786)
Q Consensus 322 aTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (786)
||+++++|||+|+|++||||++|.++..|+||+||+||.|..|.|++|+++.|+..+..+
T Consensus 736 ATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~l 795 (1195)
T PLN03137 736 ATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHM 795 (1195)
T ss_pred EechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999887666554
No 39
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.6e-44 Score=422.54 Aligned_cols=332 Identities=21% Similarity=0.326 Sum_probs=262.7
Q ss_pred CCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHH
Q 003924 29 NLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (786)
Q Consensus 29 gLs~~ll~~l~~-~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~ 107 (786)
++.......|+. .||..|+|+|.++|+.++.|+|+++.+|||||||++|++|++.. +..+|||+|+++|+.
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~--------~g~tlVisPl~sL~~ 79 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL--------DGLTLVVSPLISLMK 79 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc--------CCCEEEEecHHHHHH
Confidence 344444444444 69999999999999999999999999999999999999999854 235899999999999
Q ss_pred HHHHHHHHHccCCCCeEEEEEcCCChhHHHHH---H-cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccC
Q 003924 108 QTLKFTKELGRYTDLRISLLVGGDSMESQFEE---L-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183 (786)
Q Consensus 108 Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~---l-~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~ 183 (786)
|+.+.+..+ ++.+..+.++...+..... + .+..+|+++||++|...... ..+...++++|||||||+++++
T Consensus 80 dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~-~~l~~~~l~~iVIDEaH~i~~~ 154 (607)
T PRK11057 80 DQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFL-EHLAHWNPALLAVDEAHCISQW 154 (607)
T ss_pred HHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHH-HHHhhCCCCEEEEeCccccccc
Confidence 999888775 4777777777766554332 2 35688999999998743221 1344567899999999999988
Q ss_pred C--hHHHH---HHHHhhcccCCceEEEeccCcHHHHHHHHh--cCCCCcceeeccccccCCCceeeeeecchHHHHHHHH
Q 003924 184 G--FAEQL---HKILGQLSENRQTLLFSATLPSALAEFAKA--GLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256 (786)
Q Consensus 184 g--f~~~l---~~Il~~l~~~~q~ll~SATl~~~l~~~~~~--~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll 256 (786)
| |...+ ..+...+ ++.+++++|||++......+.. .+.+|....... ..+++ .|..+........++
T Consensus 155 G~~fr~~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~---~r~nl--~~~v~~~~~~~~~l~ 228 (607)
T PRK11057 155 GHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSF---DRPNI--RYTLVEKFKPLDQLM 228 (607)
T ss_pred cCcccHHHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCC---CCCcc--eeeeeeccchHHHHH
Confidence 7 55444 3344444 4788999999999876553333 344554332111 12222 233333344555666
Q ss_pred HHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcc
Q 003924 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (786)
Q Consensus 257 ~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~ 336 (786)
.++... .+.++||||+|+.+|+.++..|...|+.+..+||+|++.+|..+++.|+.|+++|||||+++++|||+|+++
T Consensus 229 ~~l~~~--~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~ 306 (607)
T PRK11057 229 RYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVR 306 (607)
T ss_pred HHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcC
Confidence 666543 567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHH
Q 003924 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (786)
Q Consensus 337 ~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (786)
+||+||+|.+...|+||+||+||.|.+|.|++|+++.|..++..+
T Consensus 307 ~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~ 351 (607)
T PRK11057 307 FVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (607)
T ss_pred EEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHH
Confidence 999999999999999999999999999999999999998776654
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=5.3e-44 Score=429.60 Aligned_cols=338 Identities=24% Similarity=0.315 Sum_probs=263.5
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 24 ~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~-il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
.|++|+|++.+++++...||..|+|+|.+|++. ++.|++++++||||||||++|.+|++..+.. +.++|||+|+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~-----~~kal~i~P~ 76 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR-----GGKALYIVPL 76 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc-----CCcEEEEeCh
Confidence 589999999999999999999999999999998 7889999999999999999999999998852 5689999999
Q ss_pred HHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc
Q 003924 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (786)
Q Consensus 103 reLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~ 182 (786)
++||.|+++.++.++. .++++..++|+...... ....++|+|+||+++..++.. ....+.++++||+||+|.+.+
T Consensus 77 raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~-~~~~l~~v~lvViDE~H~l~d 151 (737)
T PRK02362 77 RALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRN-GAPWLDDITCVVVDEVHLIDS 151 (737)
T ss_pred HHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhc-ChhhhhhcCEEEEECccccCC
Confidence 9999999999988764 47899999987654432 235689999999999888875 234478999999999999998
Q ss_pred CChHHHHHHHHhhc---ccCCceEEEeccCcH--HHHHHHHhcCCC----Ccceeecc--ccccCCCceeeeeecchHHH
Q 003924 183 MGFAEQLHKILGQL---SENRQTLLFSATLPS--ALAEFAKAGLRD----PHLVRLDV--DTKISPDLKLAFFTLRQEEK 251 (786)
Q Consensus 183 ~gf~~~l~~Il~~l---~~~~q~ll~SATl~~--~l~~~~~~~l~~----p~~i~~~~--~~~~~~~l~~~~~~v~~~~k 251 (786)
.++...+..++..+ .+..|+|++|||+++ .+.+++...+-. |..+.... ................ .+
T Consensus 152 ~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~--~~ 229 (737)
T PRK02362 152 ANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQREVEVP--SK 229 (737)
T ss_pred CcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCcccCCCCCCCCeeeEecCCeeccccccccCCCc--cc
Confidence 88888887776655 467899999999975 444444322111 11111100 0000000000111111 11
Q ss_pred HHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc------------------------------------CCCcee
Q 003924 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE------------------------------------GLEPSV 295 (786)
Q Consensus 252 ~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~------------------------------------g~~v~~ 295 (786)
...+..+.+.+..++++||||+|+.+|+.++..|... ...+.+
T Consensus 230 -~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~ 308 (737)
T PRK02362 230 -DDTLNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAF 308 (737)
T ss_pred -hHHHHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEe
Confidence 2233344444446789999999999999888777542 135788
Q ss_pred ecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEe----cC-----CCCCHhHHHHHhhccccCCCc--c
Q 003924 296 CYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD-----FPPKPKIFVHRVGRAARAGRT--G 364 (786)
Q Consensus 296 lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~----~d-----~P~s~~~~vQRvGR~gR~G~~--G 364 (786)
+|++|++.+|..+++.|++|.++|||||+++++|||+|.+++||+ || .|.+..+|+||+||+||.|.. |
T Consensus 309 hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G 388 (737)
T PRK02362 309 HHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYG 388 (737)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCc
Confidence 999999999999999999999999999999999999999999996 66 688999999999999999875 9
Q ss_pred EEEEEEeccc
Q 003924 365 TAFSFVTSED 374 (786)
Q Consensus 365 ~ai~lv~~~e 374 (786)
.|++++...+
T Consensus 389 ~~ii~~~~~~ 398 (737)
T PRK02362 389 EAVLLAKSYD 398 (737)
T ss_pred eEEEEecCch
Confidence 9999987653
No 41
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=9e-44 Score=416.94 Aligned_cols=315 Identities=19% Similarity=0.222 Sum_probs=249.4
Q ss_pred CCCCCChHHHHHHHHHHHcCC-cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEE-EEcCcHHHHHHHHHHHHHHcc
Q 003924 41 KGYKVPTPIQRKTMPLILSGA-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL-ILSPTRDLALQTLKFTKELGR 118 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~-dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~L-IL~PtreLa~Q~~~~l~~l~~ 118 (786)
.||. |||||.++||.++.|+ ++++.+|||||||++|.++++.. ... ...++.| +++||||||.|+++.+..+++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~--~~~~~rLv~~vPtReLa~Qi~~~~~~~~k 87 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIG--AKVPRRLVYVVNRRTVVDQVTEEAEKIGE 87 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-ccc--ccccceEEEeCchHHHHHHHHHHHHHHHH
Confidence 4997 9999999999999998 58888999999999777666632 111 2234455 477999999999999998887
Q ss_pred CC-----------------------CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCC-----------
Q 003924 119 YT-----------------------DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM----------- 164 (786)
Q Consensus 119 ~~-----------------------~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l----------- 164 (786)
.. ++++.+++||.....++..+..+|+|||+|++ ++.+ ..+
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D----~i~s-r~L~~gYg~~~~~~ 162 (844)
T TIGR02621 88 RLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVD----MIGS-RLLFSGYGCGFKSR 162 (844)
T ss_pred HhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHH----HHcC-Cccccccccccccc
Confidence 54 48899999999999999999999999999954 4433 222
Q ss_pred -----CCCceeeEEeCCccccccCChHHHHHHHHhhc--ccC---CceEEEeccCcHHHHHHHHhcCCCCcceeeccccc
Q 003924 165 -----SLKSVEYVVFDEADCLFGMGFAEQLHKILGQL--SEN---RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK 234 (786)
Q Consensus 165 -----~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l--~~~---~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~ 234 (786)
.++++.+||||||| ++++|...+..|+..+ +.. +|+++||||+|..+..+...++.++..+.+.....
T Consensus 163 pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l 240 (844)
T TIGR02621 163 PLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRL 240 (844)
T ss_pred cchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccc
Confidence 26889999999999 7899999999999975 432 69999999999888888877777776665544333
Q ss_pred cCCCceeeeeecchHHHHHHHHHHHHHh-ccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHH-----HH
Q 003924 235 ISPDLKLAFFTLRQEEKHAALLYMIREH-ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARK-----IH 308 (786)
Q Consensus 235 ~~~~l~~~~~~v~~~~k~~~Ll~lL~~~-~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~-----~~ 308 (786)
....+.+ ++.+....+...++..+... ...++++||||||+..|+.++..|...++ ..+||.|++.+|. .+
T Consensus 241 ~a~ki~q-~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~i 317 (844)
T TIGR02621 241 AAKKIVK-LVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEI 317 (844)
T ss_pred cccceEE-EEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHH
Confidence 3333343 44555555555554444322 23467899999999999999999998876 8999999999999 78
Q ss_pred HHHHhc----CC-------cEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCc-cEEEEEEec
Q 003924 309 VSRFRA----RK-------TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT-GTAFSFVTS 372 (786)
Q Consensus 309 l~~F~~----g~-------~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~-G~ai~lv~~ 372 (786)
++.|++ +. ..||||||++++||||+. ++||++..| .+.|+||+||+||.|+. +.++.++..
T Consensus 318 l~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 318 FNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred HHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 999987 44 689999999999999986 889987766 58999999999999986 444666644
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.7e-43 Score=427.83 Aligned_cols=340 Identities=25% Similarity=0.321 Sum_probs=254.7
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC----CCCeEEEEEcCcHHH
Q 003924 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP----QGGVRALILSPTRDL 105 (786)
Q Consensus 30 Ls~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~----~~g~r~LIL~PtreL 105 (786)
|++.+...+.. +|..|||+|.++||.++.|++++++||||||||++|++|+++.+..... ..+.++|||+||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666554 8999999999999999999999999999999999999999998864321 346789999999999
Q ss_pred HHHHHHHHHH-------H----ccCC-CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCC--CCCceee
Q 003924 106 ALQTLKFTKE-------L----GRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM--SLKSVEY 171 (786)
Q Consensus 106 a~Q~~~~l~~-------l----~~~~-~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l--~l~~l~~ 171 (786)
+.|+++.+.. + +... ++++.+.+|+.+..+....+...++|+||||++|..++.. ..+ .+.++++
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~-~~~~~~l~~l~~ 175 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNS-PKFREKLRTVKW 175 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcC-hhHHHHHhcCCE
Confidence 9999875442 2 2233 7788999999888877777778899999999999877754 222 4789999
Q ss_pred EEeCCccccccCChHHHHHHHHhh----cccCCceEEEeccCcH--HHHHHHHhcCC--CCccee-eccccccCCCceee
Q 003924 172 VVFDEADCLFGMGFAEQLHKILGQ----LSENRQTLLFSATLPS--ALAEFAKAGLR--DPHLVR-LDVDTKISPDLKLA 242 (786)
Q Consensus 172 vV~DEah~l~~~gf~~~l~~Il~~----l~~~~q~ll~SATl~~--~l~~~~~~~l~--~p~~i~-~~~~~~~~~~l~~~ 242 (786)
|||||||.+.+..+...+..++.. .+...|+|++|||+++ .+..++..... .+..+. ++........+...
T Consensus 176 VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~ 255 (876)
T PRK13767 176 VIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVI 255 (876)
T ss_pred EEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEe
Confidence 999999999977655554444333 3467899999999975 33333322211 111111 11111000001100
Q ss_pred -----eeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc------CCCceeecCCCCHHHHHHHHHH
Q 003924 243 -----FFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE------GLEPSVCYGDMDQDARKIHVSR 311 (786)
Q Consensus 243 -----~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~------g~~v~~lhg~l~q~~R~~~l~~ 311 (786)
+...........+...|.+.+..+.++||||+|+..|+.++..|... +..+..+||+|++++|..+++.
T Consensus 256 ~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~ 335 (876)
T PRK13767 256 SPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEK 335 (876)
T ss_pred ccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHH
Confidence 01111222334455566665566789999999999999999999873 4678999999999999999999
Q ss_pred HhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccC-CCccEEEEEEe
Q 003924 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA-GRTGTAFSFVT 371 (786)
Q Consensus 312 F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~-G~~G~ai~lv~ 371 (786)
|++|.++|||||+++++|||+|++++||+|+.|.+...|+||+||+||. |..+.++++..
T Consensus 336 fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 336 LKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred HHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 9999999999999999999999999999999999999999999999986 43444444444
No 43
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=9.5e-43 Score=419.23 Aligned_cols=349 Identities=21% Similarity=0.234 Sum_probs=274.0
Q ss_pred CCCCCchhHhhHHHHhhcc---------------CCCCCccCCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcC----
Q 003924 1 MSLVSSKAELKRREKQKKK---------------SKSGGFESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSG---- 60 (786)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~---------------~~~~~f~~lgLs~~ll~~l~~-~g~~~ptpiQ~~aip~il~g---- 60 (786)
++.|++..|.+++++-++. ....+| .+..+..++..+.. .+| .|||+|..||+.++.+
T Consensus 393 l~~lg~~~w~~~k~~~~~~~~~~a~~l~~l~a~r~~~~~~-~~~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~ 470 (926)
T TIGR00580 393 LDKLGGKSWEKTKAKVKKSVREIAAKLIELYAKRKAIKGH-AFPPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESP 470 (926)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhccc
Confidence 4567888888887775432 122233 23455666666665 689 5999999999999985
Q ss_pred --CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHH-
Q 003924 61 --ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF- 137 (786)
Q Consensus 61 --~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~- 137 (786)
.|++++|+||||||.+|++|++..+.. +.+++||+||++||.|+++.+..+....++++..++|+.+..++.
T Consensus 471 ~~~d~Ll~adTGsGKT~val~a~l~al~~-----g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~ 545 (926)
T TIGR00580 471 RPMDRLVCGDVGFGKTEVAMRAAFKAVLD-----GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNE 545 (926)
T ss_pred CcCCEEEECCCCccHHHHHHHHHHHHHHh-----CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHH
Confidence 689999999999999999999988754 578999999999999999999998877889999998887654433
Q ss_pred --HHHc-CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcHHHH
Q 003924 138 --EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALA 214 (786)
Q Consensus 138 --~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~ 214 (786)
..+. +.++|||+||..+ . ..+.+.++++|||||+|++ .......+..++.+.++|+||||+++...
T Consensus 546 ~~~~l~~g~~dIVIGTp~ll----~--~~v~f~~L~llVIDEahrf-----gv~~~~~L~~~~~~~~vL~~SATpiprtl 614 (926)
T TIGR00580 546 ILKELASGKIDILIGTHKLL----Q--KDVKFKDLGLLIIDEEQRF-----GVKQKEKLKELRTSVDVLTLSATPIPRTL 614 (926)
T ss_pred HHHHHHcCCceEEEchHHHh----h--CCCCcccCCEEEeeccccc-----chhHHHHHHhcCCCCCEEEEecCCCHHHH
Confidence 3333 4699999999422 2 3577899999999999993 33445666777888999999999877766
Q ss_pred HHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc--CCC
Q 003924 215 EFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLE 292 (786)
Q Consensus 215 ~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~--g~~ 292 (786)
.+...++.++.++....... ..+...+..... ..+...+...+..+++++|||+++.+++.++..|... ++.
T Consensus 615 ~~~l~g~~d~s~I~~~p~~R--~~V~t~v~~~~~----~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~ 688 (926)
T TIGR00580 615 HMSMSGIRDLSIIATPPEDR--LPVRTFVMEYDP----ELVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELVPEAR 688 (926)
T ss_pred HHHHhcCCCcEEEecCCCCc--cceEEEEEecCH----HHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhCCCCe
Confidence 66666777776665433221 123332222222 1222333333446789999999999999999999885 788
Q ss_pred ceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCC-CHhHHHHHhhccccCCCccEEEEEEe
Q 003924 293 PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVT 371 (786)
Q Consensus 293 v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~-s~~~~vQRvGR~gR~G~~G~ai~lv~ 371 (786)
+..+||.|++.+|..++..|++|+++|||||+++++|||+|++++||+++.|. +...|.||+||+||.|+.|.||+++.
T Consensus 689 v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~ 768 (926)
T TIGR00580 689 IAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYP 768 (926)
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999864 67789999999999999999999987
Q ss_pred cc
Q 003924 372 SE 373 (786)
Q Consensus 372 ~~ 373 (786)
+.
T Consensus 769 ~~ 770 (926)
T TIGR00580 769 HQ 770 (926)
T ss_pred Cc
Confidence 54
No 44
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1e-42 Score=409.64 Aligned_cols=320 Identities=22% Similarity=0.335 Sum_probs=261.0
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.||..++|+|.++|+.++.|+|+++++|||+|||++|++|++.. +..+|||+|+++|+.|+.+.+..+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~--------~g~~lVisPl~sL~~dq~~~l~~~---- 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL--------KGLTVVISPLISLMKDQVDQLRAA---- 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHc----
Confidence 79999999999999999999999999999999999999998842 335899999999999998888875
Q ss_pred CCeEEEEEcCCChhHHHHH----HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCC--hHHHHHH---
Q 003924 121 DLRISLLVGGDSMESQFEE----LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG--FAEQLHK--- 191 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~----l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~g--f~~~l~~--- 191 (786)
++.+..+.++.+..+.... ..+..+|+++||+++...... ..+...++++|||||||+++++| |...+..
T Consensus 77 gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~ 155 (591)
T TIGR01389 77 GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFL-NMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGS 155 (591)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHH-HHHhcCCCCEEEEeCCcccccccCccHHHHHHHHH
Confidence 4778888888776654432 246789999999998643322 24556789999999999999877 5554444
Q ss_pred HHhhcccCCceEEEeccCcHHHHHHHHhcCC--CCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcE
Q 003924 192 ILGQLSENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQT 269 (786)
Q Consensus 192 Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~--~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~ 269 (786)
+...+| ..+++++|||++..+...+...+. ++..+.. ....++ ..|..+....+...+..++... .+.++
T Consensus 156 l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~---~~~r~n--l~~~v~~~~~~~~~l~~~l~~~--~~~~~ 227 (591)
T TIGR01389 156 LAERFP-QVPRIALTATADAETRQDIRELLRLADANEFIT---SFDRPN--LRFSVVKKNNKQKFLLDYLKKH--RGQSG 227 (591)
T ss_pred HHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec---CCCCCC--cEEEEEeCCCHHHHHHHHHHhc--CCCCE
Confidence 344454 455999999999887765555543 3332221 111122 2333344455667777777764 36789
Q ss_pred EEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhH
Q 003924 270 LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349 (786)
Q Consensus 270 IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~ 349 (786)
||||+|+..++.++..|...|+.+..+||+|+..+|..+++.|..|+++|||||+++++|||+|++++||+|++|.+...
T Consensus 228 IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~ 307 (591)
T TIGR01389 228 IIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLES 307 (591)
T ss_pred EEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccCCCccEEEEEEecccHHHHHHH
Q 003924 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (786)
Q Consensus 350 ~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (786)
|+|++||+||.|..|.|++|+++.|...+..+
T Consensus 308 y~Q~~GRaGR~G~~~~~il~~~~~d~~~~~~~ 339 (591)
T TIGR01389 308 YYQEAGRAGRDGLPAEAILLYSPADIALLKRR 339 (591)
T ss_pred HhhhhccccCCCCCceEEEecCHHHHHHHHHH
Confidence 99999999999999999999999988776654
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.2e-42 Score=416.88 Aligned_cols=341 Identities=22% Similarity=0.281 Sum_probs=265.8
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 24 ~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~-il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
.|++|+|++.+.+.+..+||..|+|+|.++++. ++.|+++++++|||||||++|.+|++..+... +.++|||+|+
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~----~~~~l~l~P~ 77 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE----GGKAVYLVPL 77 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc----CCeEEEEeCh
Confidence 688999999999999999999999999999986 78999999999999999999999999887652 5689999999
Q ss_pred HHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc
Q 003924 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (786)
Q Consensus 103 reLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~ 182 (786)
++|+.|+++.+..+. ..++++..++|+...... +...++|+|+||+++..++.. ....++++++||+||+|.+.+
T Consensus 78 ~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~-~~~~l~~l~lvViDE~H~l~~ 152 (720)
T PRK00254 78 KALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKLVVADEIHLIGS 152 (720)
T ss_pred HHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhC-CchhhhcCCEEEEcCcCccCC
Confidence 999999999888774 358899999998765432 235789999999999887765 344588999999999999999
Q ss_pred CChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCc-eeeeeecchH--HH-HHHHHHH
Q 003924 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDL-KLAFFTLRQE--EK-HAALLYM 258 (786)
Q Consensus 183 ~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l-~~~~~~v~~~--~k-~~~Ll~l 258 (786)
.++...+..++..++...|+|++|||+++. .+++. ++..+.+............+ ...+...... .+ ...+...
T Consensus 153 ~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~-wl~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (720)
T PRK00254 153 YDRGATLEMILTHMLGRAQILGLSATVGNA-EELAE-WLNAELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESL 230 (720)
T ss_pred ccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHH-HhCCccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHH
Confidence 889999999999999899999999999753 33433 33322211100000000000 0111111111 11 1233344
Q ss_pred HHHhccCCCcEEEEEcchhhHHHHHHHHHH---------------------------------cCCCceeecCCCCHHHH
Q 003924 259 IREHISSDQQTLIFVSTKHHVEFLNVLFRE---------------------------------EGLEPSVCYGDMDQDAR 305 (786)
Q Consensus 259 L~~~~~~~~k~IVF~~t~~~ae~l~~~L~~---------------------------------~g~~v~~lhg~l~q~~R 305 (786)
+.+.+..+.++||||+|+..|+.++..|.. ....+.++|++|++.+|
T Consensus 231 ~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR 310 (720)
T PRK00254 231 VYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTER 310 (720)
T ss_pred HHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHH
Confidence 444455678999999999999887765532 12358899999999999
Q ss_pred HHHHHHHhcCCcEEEEEecccccccCCCCcceeEe-------cCCCC-CHhHHHHHhhccccCC--CccEEEEEEecccH
Q 003924 306 KIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN-------WDFPP-KPKIFVHRVGRAARAG--RTGTAFSFVTSEDM 375 (786)
Q Consensus 306 ~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~-------~d~P~-s~~~~vQRvGR~gR~G--~~G~ai~lv~~~e~ 375 (786)
..+++.|++|.++|||||+++++|+|+|.+++||. ++.|. +...|+||+||+||.| ..|.+++++...+.
T Consensus 311 ~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~ 390 (720)
T PRK00254 311 VLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEP 390 (720)
T ss_pred HHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcch
Confidence 99999999999999999999999999999999993 55544 5678999999999975 56999999987653
No 46
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-44 Score=356.17 Aligned_cols=333 Identities=30% Similarity=0.546 Sum_probs=290.7
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~ 100 (786)
.+.+|.++-|.|+++++|-..||..|+.+|.+|||...-|-||+++|..|-|||++|++..++.|.-. .....+|++|
T Consensus 40 hssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv--~g~vsvlvmc 117 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV--DGQVSVLVMC 117 (387)
T ss_pred eccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC--CCeEEEEEEe
Confidence 46789999999999999999999999999999999999999999999999999999999988887532 3457899999
Q ss_pred CcHHHHHHHHHHHHHHccCC-CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccc
Q 003924 101 PTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (786)
Q Consensus 101 PtreLa~Q~~~~l~~l~~~~-~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~ 179 (786)
.|||||.|+.++...|+++. ++++++.+||.......+.+.+-|.|+|+||||++.+..+ ..++++++..+|+||||.
T Consensus 118 htrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~-k~l~lk~vkhFvlDEcdk 196 (387)
T KOG0329|consen 118 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN-RSLNLKNVKHFVLDECDK 196 (387)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh-ccCchhhcceeehhhHHH
Confidence 99999999999999998875 7999999999998888888888999999999999999887 589999999999999998
Q ss_pred ccc-CChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccC-CCceeeeeecchHHHHHHHHH
Q 003924 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS-PDLKLAFFTLRQEEKHAALLY 257 (786)
Q Consensus 180 l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~-~~l~~~~~~v~~~~k~~~Ll~ 257 (786)
|++ ......+++|....|...|+++||||+++++...++.++.+|..|.++.+.+.. ..+++.|..+...+|...|.+
T Consensus 197 mle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~d 276 (387)
T KOG0329|consen 197 MLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLND 276 (387)
T ss_pred HHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 875 456789999999999999999999999999999999999999999888876654 578888888888888888888
Q ss_pred HHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcce
Q 003924 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (786)
Q Consensus 258 lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~ 337 (786)
+|... ...+++||+.+... ++ | +.+ ||+|++.+||+||..++.
T Consensus 277 LLd~L--eFNQVvIFvKsv~R---------------------l~----------f---~kr-~vat~lfgrgmdiervNi 319 (387)
T KOG0329|consen 277 LLDVL--EFNQVVIFVKSVQR---------------------LS----------F---QKR-LVATDLFGRGMDIERVNI 319 (387)
T ss_pred hhhhh--hhcceeEeeehhhh---------------------hh----------h---hhh-hHHhhhhccccCccccee
Confidence 87754 56899999987654 00 2 223 899999999999999999
Q ss_pred eEecCCCCCHhHHHHHhhccccCCCccEEEEEEecc-cHHHHHHHHHHhcCCCCCCC
Q 003924 338 VINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPIRAAP 393 (786)
Q Consensus 338 VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~-e~~~l~~l~~~l~~~~~~~p 393 (786)
|+|||+|.++++|+||+||+||.|..|.++.|++.. +...+..++..+...+...|
T Consensus 320 ~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf~v~i~eLp 376 (387)
T KOG0329|consen 320 VFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRFEVNIKELP 376 (387)
T ss_pred eeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhhhccHhhcC
Confidence 999999999999999999999999999999999975 44555555554444444444
No 47
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=6.9e-42 Score=419.83 Aligned_cols=347 Identities=19% Similarity=0.201 Sum_probs=272.1
Q ss_pred CCCCCchhHhhHHHHhhcc-----------------CCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC---
Q 003924 1 MSLVSSKAELKRREKQKKK-----------------SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--- 60 (786)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g--- 60 (786)
++.|++..|...+++-++. .++-.| -.-+..........+| .|||+|.+|||.++.+
T Consensus 542 l~~lg~~~w~~~k~~~~~~~~~~a~~l~~~~a~r~~~~~~~~--~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~ 618 (1147)
T PRK10689 542 LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAF--KHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQ 618 (1147)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC--CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhc
Confidence 4567888888887775533 233333 2224455666677899 7999999999999987
Q ss_pred ---CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHH
Q 003924 61 ---ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (786)
Q Consensus 61 ---~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~ 137 (786)
.|++++|+||||||.+|+.+++..+. .+.+++||+||++||.|+++.+..+....++++.+++|+.+..++.
T Consensus 619 ~~~~d~Ll~a~TGsGKT~val~aa~~~~~-----~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~ 693 (1147)
T PRK10689 619 PLAMDRLVCGDVGFGKTEVAMRAAFLAVE-----NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQT 693 (1147)
T ss_pred CCCCCEEEEcCCCcCHHHHHHHHHHHHHH-----cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHH
Confidence 89999999999999999988876653 3778999999999999999999987666788999999988877766
Q ss_pred HHHc----CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcHHH
Q 003924 138 EELA----QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSAL 213 (786)
Q Consensus 138 ~~l~----~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l 213 (786)
..+. +.++|||+||+.+ . ..+.+.++++|||||+|++ |+. ....+..++.++|+++||||+++..
T Consensus 694 ~il~~l~~g~~dIVVgTp~lL----~--~~v~~~~L~lLVIDEahrf---G~~--~~e~lk~l~~~~qvLl~SATpiprt 762 (1147)
T PRK10689 694 QILAEAAEGKIDILIGTHKLL----Q--SDVKWKDLGLLIVDEEHRF---GVR--HKERIKAMRADVDILTLTATPIPRT 762 (1147)
T ss_pred HHHHHHHhCCCCEEEECHHHH----h--CCCCHhhCCEEEEechhhc---chh--HHHHHHhcCCCCcEEEEcCCCCHHH
Confidence 5442 5799999999743 2 2567889999999999996 332 3456677888999999999998887
Q ss_pred HHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc--CC
Q 003924 214 AEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GL 291 (786)
Q Consensus 214 ~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~--g~ 291 (786)
..++..++.++..+....... ..+...+........... ++.+ +..+++++|||+++..++.++..|... ++
T Consensus 763 l~l~~~gl~d~~~I~~~p~~r--~~v~~~~~~~~~~~~k~~---il~e-l~r~gqv~vf~n~i~~ie~la~~L~~~~p~~ 836 (1147)
T PRK10689 763 LNMAMSGMRDLSIIATPPARR--LAVKTFVREYDSLVVREA---ILRE-ILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 (1147)
T ss_pred HHHHHhhCCCcEEEecCCCCC--CCceEEEEecCcHHHHHH---HHHH-HhcCCeEEEEECCHHHHHHHHHHHHHhCCCC
Confidence 788888888888776543322 223333322222111112 2222 234689999999999999999999887 78
Q ss_pred CceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCC-CCHhHHHHHhhccccCCCccEEEEEE
Q 003924 292 EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP-PKPKIFVHRVGRAARAGRTGTAFSFV 370 (786)
Q Consensus 292 ~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P-~s~~~~vQRvGR~gR~G~~G~ai~lv 370 (786)
.+..+||+|++.+|..++..|++|+++|||||+++++|||+|++++||..+.. .+...|+||+||+||.|+.|.||+++
T Consensus 837 ~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEe
Confidence 89999999999999999999999999999999999999999999999944332 24467999999999999999999887
Q ss_pred ec
Q 003924 371 TS 372 (786)
Q Consensus 371 ~~ 372 (786)
.+
T Consensus 917 ~~ 918 (1147)
T PRK10689 917 PH 918 (1147)
T ss_pred CC
Confidence 54
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.3e-40 Score=395.30 Aligned_cols=318 Identities=20% Similarity=0.249 Sum_probs=245.9
Q ss_pred HHHHHH-HHHCCCCCChHHHHHHHHHHHcC------CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHH
Q 003924 32 PNVFRA-IKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (786)
Q Consensus 32 ~~ll~~-l~~~g~~~ptpiQ~~aip~il~g------~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptre 104 (786)
..++.. +..++| .||++|.++|+.|..+ .+++++|+||||||++|++|++..+. .|.+++||+||++
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-----~g~q~lilaPT~~ 321 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-----AGYQAALMAPTEI 321 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEEeccHH
Confidence 344444 445788 7999999999999987 37999999999999999999998775 3778999999999
Q ss_pred HHHHHHHHHHHHccCCCCeEEEEEcCCChhHH---HHHHc-CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccc
Q 003924 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQ---FEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (786)
Q Consensus 105 La~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~---~~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l 180 (786)
||.|+++.++.+....++++.+++|+.+..+. +..+. +.++|+||||+.+.+ .+.+.++++||+||+|++
T Consensus 322 LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~v~~~~l~lvVIDE~Hrf 395 (681)
T PRK10917 322 LAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD------DVEFHNLGLVIIDEQHRF 395 (681)
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc------cchhcccceEEEechhhh
Confidence 99999999999988889999999999886443 33444 469999999987742 456789999999999995
Q ss_pred ccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHH
Q 003924 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIR 260 (786)
Q Consensus 181 ~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~ 260 (786)
. ......+.......++++||||+.+....+...+..++ ..++........+...+.. ......++..+.
T Consensus 396 g-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~--s~i~~~p~~r~~i~~~~~~---~~~~~~~~~~i~ 465 (681)
T PRK10917 396 G-----VEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDV--SVIDELPPGRKPITTVVIP---DSRRDEVYERIR 465 (681)
T ss_pred h-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCce--EEEecCCCCCCCcEEEEeC---cccHHHHHHHHH
Confidence 2 22333444445578999999998665444433222222 2222211111123222222 223344556666
Q ss_pred HhccCCCcEEEEEcchh--------hHHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeccccccc
Q 003924 261 EHISSDQQTLIFVSTKH--------HVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (786)
Q Consensus 261 ~~~~~~~k~IVF~~t~~--------~ae~l~~~L~~~--g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGl 330 (786)
+.+..+.+++|||++++ .++.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++||
T Consensus 466 ~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~Gi 545 (681)
T PRK10917 466 EEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGV 545 (681)
T ss_pred HHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCc
Confidence 66667889999999654 456677777765 47899999999999999999999999999999999999999
Q ss_pred CCCCcceeEecCCCC-CHhHHHHHhhccccCCCccEEEEEEe
Q 003924 331 DIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVT 371 (786)
Q Consensus 331 DIp~v~~VI~~d~P~-s~~~~vQRvGR~gR~G~~G~ai~lv~ 371 (786)
|+|++++||+++.|. ....|.||+||+||.|..|.|++++.
T Consensus 546 Dip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 546 DVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 999999999999986 57788899999999999999999995
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=7.2e-40 Score=386.57 Aligned_cols=319 Identities=19% Similarity=0.234 Sum_probs=244.1
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHcC------CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHH
Q 003924 32 PNVFRAIKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (786)
Q Consensus 32 ~~ll~~l~~~g~~~ptpiQ~~aip~il~g------~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreL 105 (786)
..+...+..++| .||++|.+||+.|+.+ .+.+++|+||||||++|++|++..+.. |.+++|++||++|
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~-----g~qvlilaPT~~L 296 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA-----GYQVALMAPTEIL 296 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc-----CCcEEEECCHHHH
Confidence 444566678899 8999999999999976 258999999999999999999987753 6789999999999
Q ss_pred HHHHHHHHHHHccCCCCeEEEEEcCCChhH---HHHHHc-CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 106 ALQTLKFTKELGRYTDLRISLLVGGDSMES---QFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 106 a~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~---~~~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
|.|+++.+..+....++++.+++|+....+ .+..+. +.++|||+||+.+.+ .+.+.++++|||||+|++.
T Consensus 297 A~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~------~~~~~~l~lvVIDEaH~fg 370 (630)
T TIGR00643 297 AEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE------KVEFKRLALVIIDEQHRFG 370 (630)
T ss_pred HHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc------cccccccceEEEechhhcc
Confidence 999999999998888999999999987655 333333 568999999997742 4667899999999999953
Q ss_pred cCChHHHHHHHHhhcc--cCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHH
Q 003924 182 GMGFAEQLHKILGQLS--ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (786)
Q Consensus 182 ~~gf~~~l~~Il~~l~--~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL 259 (786)
. .+...++.... ..+++++||||+.+....+...+.-+... ++........+...+ +.... ...++..+
T Consensus 371 ~----~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~--i~~~p~~r~~i~~~~--~~~~~-~~~~~~~i 441 (630)
T TIGR00643 371 V----EQRKKLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSI--IDELPPGRKPITTVL--IKHDE-KDIVYEFI 441 (630)
T ss_pred H----HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceee--eccCCCCCCceEEEE--eCcch-HHHHHHHH
Confidence 2 12222333332 26899999999865433332222111111 111111111122222 22222 25566667
Q ss_pred HHhccCCCcEEEEEcch--------hhHHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccc
Q 003924 260 REHISSDQQTLIFVSTK--------HHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (786)
Q Consensus 260 ~~~~~~~~k~IVF~~t~--------~~ae~l~~~L~~~--g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arG 329 (786)
.+.+..+.+++|||+++ ..++.++..|... ++.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 442 ~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~G 521 (630)
T TIGR00643 442 EEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVG 521 (630)
T ss_pred HHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecC
Confidence 66666788999999976 3466777777653 6789999999999999999999999999999999999999
Q ss_pred cCCCCcceeEecCCCC-CHhHHHHHhhccccCCCccEEEEEEe
Q 003924 330 IDIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVT 371 (786)
Q Consensus 330 lDIp~v~~VI~~d~P~-s~~~~vQRvGR~gR~G~~G~ai~lv~ 371 (786)
||+|++++||+++.|. +...|.||+||+||.|..|.|++++.
T Consensus 522 vDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~~ 564 (630)
T TIGR00643 522 VDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVYK 564 (630)
T ss_pred cccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEEC
Confidence 9999999999999986 67788999999999999999999993
No 50
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=4.1e-40 Score=393.16 Aligned_cols=336 Identities=19% Similarity=0.298 Sum_probs=257.0
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcH
Q 003924 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (786)
Q Consensus 24 ~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptr 103 (786)
.|++|+|++.+++.+...+|. |+|+|.++++.++.+++++++||||||||+++.+++++.+.. +.++|||+|++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~-----~~k~v~i~P~r 75 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA-----GLKSIYIVPLR 75 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh-----CCcEEEEechH
Confidence 588999999999999999996 999999999999999999999999999999999999988764 45799999999
Q ss_pred HHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccC
Q 003924 104 DLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183 (786)
Q Consensus 104 eLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~ 183 (786)
+||.|+++.+..+. ..++.+...+|+...... ....++|+|+||+++..++... ...+.++++||+||||.+.+.
T Consensus 76 aLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~-~~~l~~v~lvViDEaH~l~d~ 150 (674)
T PRK01172 76 SLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHD-PYIINDVGLIVADEIHIIGDE 150 (674)
T ss_pred HHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCC-hhHHhhcCEEEEecchhccCC
Confidence 99999999988764 457888888887654432 2346899999999998887653 345889999999999999988
Q ss_pred ChHHHHHHHHhh---cccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeee-----eecchH-HHHHH
Q 003924 184 GFAEQLHKILGQ---LSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAF-----FTLRQE-EKHAA 254 (786)
Q Consensus 184 gf~~~l~~Il~~---l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~-----~~v~~~-~k~~~ 254 (786)
++...+..++.. ++...|+|++|||+++. .+++. ++..+.+ ... ....+ +.... ..+... .....
T Consensus 151 ~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~~-~~~--~r~vp-l~~~i~~~~~~~~~~~~~~~~~ 224 (674)
T PRK01172 151 DRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASLI-KSN--FRPVP-LKLGILYRKRLILDGYERSQVD 224 (674)
T ss_pred CccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCcc-CCC--CCCCC-eEEEEEecCeeeeccccccccc
Confidence 777777776554 45678999999999763 33443 3332211 111 00000 11000 001111 11112
Q ss_pred HHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc-------------------------CCCceeecCCCCHHHHHHHH
Q 003924 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-------------------------GLEPSVCYGDMDQDARKIHV 309 (786)
Q Consensus 255 Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~-------------------------g~~v~~lhg~l~q~~R~~~l 309 (786)
+..++.+....++++||||+|+..++.++..|... ...+.++||+|++.+|..++
T Consensus 225 ~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 225 INSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 44555555567889999999999999999888653 12467899999999999999
Q ss_pred HHHhcCCcEEEEEecccccccCCCCcceeEecCC---------CCCHhHHHHHhhccccCCC--ccEEEEEEeccc-HHH
Q 003924 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF---------PPKPKIFVHRVGRAARAGR--TGTAFSFVTSED-MAY 377 (786)
Q Consensus 310 ~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~---------P~s~~~~vQRvGR~gR~G~--~G~ai~lv~~~e-~~~ 377 (786)
+.|++|.++|||||+++++|+|+|...+|| ++. |.++.+|.||+||+||.|. .|.+++++...+ ..+
T Consensus 305 ~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~ 383 (674)
T PRK01172 305 EMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDA 383 (674)
T ss_pred HHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHH
Confidence 999999999999999999999999865444 443 5688899999999999985 577888876543 444
No 51
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=4e-40 Score=405.12 Aligned_cols=283 Identities=22% Similarity=0.322 Sum_probs=228.8
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.|+ .|||+|+.++|.++.|+|++++||||||||+ |++|++..+.. .+.++|||+||++|+.|+++.++.++...
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~----~g~~alIL~PTreLa~Qi~~~l~~l~~~~ 150 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK----KGKKSYIIFPTRLLVEQVVEKLEKFGEKV 150 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeccHHHHHHHHHHHHHHhhhc
Confidence 477 8999999999999999999999999999996 56666655543 37889999999999999999999999988
Q ss_pred CCeEEEEEcCCCh-----hHHHHHHc-CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc-----------C
Q 003924 121 DLRISLLVGGDSM-----ESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-----------M 183 (786)
Q Consensus 121 ~l~v~~l~gg~~~-----~~~~~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~-----------~ 183 (786)
++.+..++|+... .++...+. +.++|+|+||++|.+++. .+....+++|||||||++++ +
T Consensus 151 ~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~---~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~l 227 (1176)
T PRK09401 151 GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD---ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLL 227 (1176)
T ss_pred CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH---hccccccCEEEEEChHHhhhcccchhhHHHhC
Confidence 9998888877542 33344444 469999999999998876 35667799999999999986 7
Q ss_pred ChH-HHHHHHHhhccc------------------------CCceEEEeccCcHH-HHHHHHhcCCCCcceeeccccccCC
Q 003924 184 GFA-EQLHKILGQLSE------------------------NRQTLLFSATLPSA-LAEFAKAGLRDPHLVRLDVDTKISP 237 (786)
Q Consensus 184 gf~-~~l~~Il~~l~~------------------------~~q~ll~SATl~~~-l~~~~~~~l~~p~~i~~~~~~~~~~ 237 (786)
||. +.+..++..++. .+|+++||||+++. +.. ..+.++..+.+........
T Consensus 228 GF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~~~~r 304 (1176)
T PRK09401 228 GFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPVFYLR 304 (1176)
T ss_pred CCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcccccC
Confidence 885 678888777764 68999999999864 332 1223343344444444445
Q ss_pred CceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhh---HHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhc
Q 003924 238 DLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHH---VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314 (786)
Q Consensus 238 ~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~---ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~ 314 (786)
++.+.|+.+. ++...|..++... +.++||||+|+.. |+.++..|...|+.+..+||+| ...+++|++
T Consensus 305 nI~~~yi~~~--~k~~~L~~ll~~l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~ 374 (1176)
T PRK09401 305 NIVDSYIVDE--DSVEKLVELVKRL---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEE 374 (1176)
T ss_pred CceEEEEEcc--cHHHHHHHHHHhc---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHC
Confidence 6777776654 5666777777654 4589999999887 9999999999999999999999 234699999
Q ss_pred CCcEEEEE----ecccccccCCCC-cceeEecCCCC
Q 003924 315 RKTMFLIV----TDVAARGIDIPL-LDNVINWDFPP 345 (786)
Q Consensus 315 g~~~ILVa----Tdv~arGlDIp~-v~~VI~~d~P~ 345 (786)
|+++|||| ||+++||||+|+ +++|||||+|.
T Consensus 375 G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 375 GEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred CCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 99999999 699999999999 89999999996
No 52
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=5.5e-39 Score=374.97 Aligned_cols=313 Identities=16% Similarity=0.158 Sum_probs=238.0
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCChHHHH---------HHHHHHHHHhhcC-CCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003924 47 TPIQRKTMPLILSGADVVAMARTGSGKTAA---------FLVPMLQRLNQHV-PQGGVRALILSPTRDLALQTLKFTKEL 116 (786)
Q Consensus 47 tpiQ~~aip~il~g~dvvl~a~TGSGKT~a---------fllpile~L~~~~-~~~g~r~LIL~PtreLa~Q~~~~l~~l 116 (786)
..+|+++++.++.|+++|++|+||||||++ |+.|.+..+..-. ...+.+++|++||||||.|+...+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999997 4445555443211 123568999999999999999988765
Q ss_pred ccC---CCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHH
Q 003924 117 GRY---TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (786)
Q Consensus 117 ~~~---~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il 193 (786)
..+ .++.+.+.+||... .+........+|+|+|++.. ...++.+++|||||||++..++ ..+..++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L~--------l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKLT--------LNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred hCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCccc--------ccccccCCEEEccccccCccch--hHHHHHH
Confidence 433 46778889999873 32233334679999997621 2357889999999999998876 4455555
Q ss_pred hhcc-cCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecch---------HHHHHHHHHHHHHhc
Q 003924 194 GQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ---------EEKHAALLYMIREHI 263 (786)
Q Consensus 194 ~~l~-~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~---------~~k~~~Ll~lL~~~~ 263 (786)
..+. ..+|+++||||+|..+..+ ..++.+|..+.+... ....+++.|..... ......++..+....
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr--t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~ 391 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG--TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYT 391 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC--cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhh
Confidence 5443 4469999999999888777 578888888876532 22345555543220 111122334443322
Q ss_pred -cCCCcEEEEEcchhhHHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHH-hcCCcEEEEEecccccccCCCCcceeE
Q 003924 264 -SSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRF-RARKTMFLIVTDVAARGIDIPLLDNVI 339 (786)
Q Consensus 264 -~~~~k~IVF~~t~~~ae~l~~~L~~~--g~~v~~lhg~l~q~~R~~~l~~F-~~g~~~ILVaTdv~arGlDIp~v~~VI 339 (786)
..++++||||+++..++.+++.|... ++.+..+||+|++. +.++..| ++|+.+||||||+|++|||||+|++||
T Consensus 392 ~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 392 PPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEE
Confidence 23568999999999999999999887 68999999999985 4567777 689999999999999999999999999
Q ss_pred ecC---CCC---------CHhHHHHHhhccccCCCccEEEEEEecccHH
Q 003924 340 NWD---FPP---------KPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (786)
Q Consensus 340 ~~d---~P~---------s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~ 376 (786)
++| .|. |...|+||+||+||. ++|.|+.|+++++..
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~ 517 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLK 517 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhH
Confidence 998 554 788999999999999 789999999998753
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=9.8e-39 Score=393.61 Aligned_cols=323 Identities=22% Similarity=0.288 Sum_probs=232.2
Q ss_pred EEcCCCChHHHHHHHHHHHHHhhcC--------CCCCeEEEEEcCcHHHHHHHHHHHHH----H-------c-cCCCCeE
Q 003924 65 AMARTGSGKTAAFLVPMLQRLNQHV--------PQGGVRALILSPTRDLALQTLKFTKE----L-------G-RYTDLRI 124 (786)
Q Consensus 65 l~a~TGSGKT~afllpile~L~~~~--------~~~g~r~LIL~PtreLa~Q~~~~l~~----l-------~-~~~~l~v 124 (786)
++||||||||+||++|+++.+.... ...+.++|||+|+++|+.|+.+.++. + + ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999987532 12468999999999999999998764 2 1 1357899
Q ss_pred EEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCC----hHHHHHHHHhhcccCC
Q 003924 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG----FAEQLHKILGQLSENR 200 (786)
Q Consensus 125 ~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~g----f~~~l~~Il~~l~~~~ 200 (786)
...+|+.+..++...+.+.|+|||+||++|..++.......++++++|||||+|.+.+.. +...+..|...++...
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 999999998888777778899999999999988765323458999999999999999753 3445555555567789
Q ss_pred ceEEEeccCcHHHHHHHHhcCC-CCcceeeccccccCCCceeeeeecchHHH--------------------HHHHHHHH
Q 003924 201 QTLLFSATLPSALAEFAKAGLR-DPHLVRLDVDTKISPDLKLAFFTLRQEEK--------------------HAALLYMI 259 (786)
Q Consensus 201 q~ll~SATl~~~l~~~~~~~l~-~p~~i~~~~~~~~~~~l~~~~~~v~~~~k--------------------~~~Ll~lL 259 (786)
|+|++|||+++. .+++..... .|..+. .........+... +.+..... ...+...+
T Consensus 161 QrIgLSATI~n~-eevA~~L~g~~pv~Iv-~~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~i 237 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVAAFLGGDRPVTVV-NPPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGI 237 (1490)
T ss_pred eEEEEEeeCCCH-HHHHHHhcCCCCEEEE-CCCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHH
Confidence 999999999873 445543222 343332 2211111222211 11111000 01111112
Q ss_pred HHhccCCCcEEEEEcchhhHHHHHHHHHHcC---------------------------------CCceeecCCCCHHHHH
Q 003924 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEG---------------------------------LEPSVCYGDMDQDARK 306 (786)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g---------------------------------~~v~~lhg~l~q~~R~ 306 (786)
...+..+.++||||||+..|+.++..|.... +.+..+||+|++++|.
T Consensus 238 l~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~ 317 (1490)
T PRK09751 238 LDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRA 317 (1490)
T ss_pred HHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHH
Confidence 2223356899999999999999999887531 1146789999999999
Q ss_pred HHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHH----HHH
Q 003924 307 IHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLL----DLH 382 (786)
Q Consensus 307 ~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~----~l~ 382 (786)
.+++.|++|++++||||+.+++||||+.+++||+|+.|.+...|+||+||+||. ..|.+..++.+.+...+. -++
T Consensus 318 ~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~-~gg~s~gli~p~~r~dlle~~~~ve 396 (1490)
T PRK09751 318 ITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ-VGGVSKGLFFPRTRRDLVDSAVIVE 396 (1490)
T ss_pred HHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC-CCCccEEEEEeCcHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999996 234443344443332222 244
Q ss_pred HHhcCCCCC
Q 003924 383 LFLSKPIRA 391 (786)
Q Consensus 383 ~~l~~~~~~ 391 (786)
.++...+..
T Consensus 397 ~~l~g~iE~ 405 (1490)
T PRK09751 397 CMFAGRLEN 405 (1490)
T ss_pred HHhcCCCCc
Confidence 555544443
No 54
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=8.7e-39 Score=373.12 Aligned_cols=340 Identities=28% Similarity=0.340 Sum_probs=268.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcC---CCCCeEEEEEcCcHHHH
Q 003924 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRALILSPTRDLA 106 (786)
Q Consensus 30 Ls~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~---~~~g~r~LIL~PtreLa 106 (786)
|++.+.+.+... |..|||.|..|||.|.+|+++++.||||||||+|+++|++..|.... ...+..+|||+|.++|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 789999999998 99999999999999999999999999999999999999999998762 34578999999999999
Q ss_pred HHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccC-CCCCceeeEEeCCccccccCCh
Q 003924 107 LQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-MSLKSVEYVVFDEADCLFGMGF 185 (786)
Q Consensus 107 ~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~-l~l~~l~~vV~DEah~l~~~gf 185 (786)
..+...+...+..+|+.+.+-+|.++..+......+.|+|+|+||+.|.-++..... -.|.++.+||+||.|.+.+...
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKR 166 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKR 166 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhcccc
Confidence 999999999999999999888887777666667778999999999999877764211 2389999999999999987654
Q ss_pred HHHHHHHHhhc---ccCCceEEEeccCcH--HHHHHHHhcCCCCcceeeccccccCCCceeeeeecc---hHHHHHHHHH
Q 003924 186 AEQLHKILGQL---SENRQTLLFSATLPS--ALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR---QEEKHAALLY 257 (786)
Q Consensus 186 ~~~l~~Il~~l---~~~~q~ll~SATl~~--~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~---~~~k~~~Ll~ 257 (786)
..++.--+.++ ....|.|++|||..+ .+..|+-..-....++.+..... ..+....-... ...-...++.
T Consensus 167 G~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~--~~i~v~~p~~~~~~~~~~~~~~~~ 244 (814)
T COG1201 167 GVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKK--LEIKVISPVEDLIYDEELWAALYE 244 (814)
T ss_pred chhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCc--ceEEEEecCCccccccchhHHHHH
Confidence 44444433333 228899999999853 33333322211223333322221 12221111111 0122344555
Q ss_pred HHHHhccCCCcEEEEEcchhhHHHHHHHHHHcC-CCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcc
Q 003924 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEG-LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (786)
Q Consensus 258 lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g-~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~ 336 (786)
.+.+.++....+|||+||+..+|.++..|...+ ..+..+||+++.+.|..+.++|++|+.+++|||..++-|||+-+++
T Consensus 245 ~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vd 324 (814)
T COG1201 245 RIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDID 324 (814)
T ss_pred HHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCce
Confidence 555555566799999999999999999999887 7889999999999999999999999999999999999999999999
Q ss_pred eeEecCCCCCHhHHHHHhhccccC-CCccEEEEEEec
Q 003924 337 NVINWDFPPKPKIFVHRVGRAARA-GRTGTAFSFVTS 372 (786)
Q Consensus 337 ~VI~~d~P~s~~~~vQRvGR~gR~-G~~G~ai~lv~~ 372 (786)
.||+|+.|.+...++||+||+|+. |....++++...
T Consensus 325 lVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 325 LVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred EEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999974 555666666665
No 55
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=2.8e-38 Score=377.07 Aligned_cols=309 Identities=19% Similarity=0.274 Sum_probs=243.8
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-HHccCCCCeEEEE
Q 003924 49 IQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-ELGRYTDLRISLL 127 (786)
Q Consensus 49 iQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~-~l~~~~~l~v~~l 127 (786)
+-.+.+..+..++++|++|+||||||++|.+|+++... .+.++||+.|||++|.|+++.+. .++...+..+...
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~-----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG-----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc-----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 33455666778899999999999999999999998753 24589999999999999999874 6666677778877
Q ss_pred EcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcc-ccccCChHHH-HHHHHhhcccCCceEEE
Q 003924 128 VGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD-CLFGMGFAEQ-LHKILGQLSENRQTLLF 205 (786)
Q Consensus 128 ~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah-~l~~~gf~~~-l~~Il~~l~~~~q~ll~ 205 (786)
+++.+. ...++.|+|+|||+|++++.. +..++++++|||||+| ++++.++... +..+...++...|+|+|
T Consensus 81 vr~~~~------~s~~t~I~v~T~G~Llr~l~~--d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlm 152 (819)
T TIGR01970 81 VRGENK------VSRRTRLEVVTEGILTRMIQD--DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAM 152 (819)
T ss_pred Eccccc------cCCCCcEEEECCcHHHHHHhh--CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEE
Confidence 776542 345689999999999999876 5679999999999999 5777766543 34566667889999999
Q ss_pred eccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHH-HHHHHHHHhc-cCCCcEEEEEcchhhHHHHH
Q 003924 206 SATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA-ALLYMIREHI-SSDQQTLIFVSTKHHVEFLN 283 (786)
Q Consensus 206 SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~-~Ll~lL~~~~-~~~~k~IVF~~t~~~ae~l~ 283 (786)
|||++... ...++.++..+.+.... ..+++.|..+...++.. .+...+...+ ...+.+||||+++..++.++
T Consensus 153 SATl~~~~---l~~~l~~~~vI~~~gr~---~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~ 226 (819)
T TIGR01970 153 SATLDGER---LSSLLPDAPVVESEGRS---FPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQ 226 (819)
T ss_pred eCCCCHHH---HHHHcCCCcEEEecCcc---eeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHH
Confidence 99998763 34566666665544321 23556666554444322 1222222221 13578999999999999999
Q ss_pred HHHHH---cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCC--------------
Q 003924 284 VLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPK-------------- 346 (786)
Q Consensus 284 ~~L~~---~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s-------------- 346 (786)
..|.. .++.+..+||+|++.+|..++..|++|..+||||||++++|||||+|++||++++|..
T Consensus 227 ~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~ 306 (819)
T TIGR01970 227 EQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLET 306 (819)
T ss_pred HHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeE
Confidence 99987 4788999999999999999999999999999999999999999999999999998742
Q ss_pred ----HhHHHHHhhccccCCCccEEEEEEecccHHH
Q 003924 347 ----PKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (786)
Q Consensus 347 ----~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~ 377 (786)
-..++||+||+||. .+|.||.|++..+...
T Consensus 307 ~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 307 VRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred EEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 34589999999999 7999999999876543
No 56
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=5.5e-38 Score=375.35 Aligned_cols=307 Identities=18% Similarity=0.243 Sum_probs=242.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-HHccCCCCeEEEEE
Q 003924 50 QRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-ELGRYTDLRISLLV 128 (786)
Q Consensus 50 Q~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~-~l~~~~~l~v~~l~ 128 (786)
-.+.+..+.+++++|+.|+||||||++|.+|+++.... ..++||+.|||++|.|+++.+. .++...+..+...+
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~v 84 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRM 84 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEe
Confidence 34556667788999999999999999999999976422 2489999999999999999874 56777788888888
Q ss_pred cCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccc-cccCChH-HHHHHHHhhcccCCceEEEe
Q 003924 129 GGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC-LFGMGFA-EQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 129 gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~-l~~~gf~-~~l~~Il~~l~~~~q~ll~S 206 (786)
++.+.. .....|+|+|||+|++++.. +..++++++|||||+|. .++..+. ..+..++..+++..|+|+||
T Consensus 85 r~~~~~------~~~t~I~v~T~G~Llr~l~~--d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmS 156 (812)
T PRK11664 85 RAESKV------GPNTRLEVVTEGILTRMIQR--DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMS 156 (812)
T ss_pred cCcccc------CCCCcEEEEChhHHHHHHhh--CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEe
Confidence 876532 23568999999999999875 56799999999999996 4554432 33445667778889999999
Q ss_pred ccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHH-HHHHHHHHhcc-CCCcEEEEEcchhhHHHHHH
Q 003924 207 ATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHA-ALLYMIREHIS-SDQQTLIFVSTKHHVEFLNV 284 (786)
Q Consensus 207 ATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~-~Ll~lL~~~~~-~~~k~IVF~~t~~~ae~l~~ 284 (786)
||++... + ..++.++..+.+... ...+.+.|..+....+.. .+...+...+. ..+.+||||++...++.++.
T Consensus 157 ATl~~~~--l-~~~~~~~~~I~~~gr---~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~ 230 (812)
T PRK11664 157 ATLDNDR--L-QQLLPDAPVIVSEGR---SFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQE 230 (812)
T ss_pred cCCCHHH--H-HHhcCCCCEEEecCc---cccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHH
Confidence 9998752 3 456666665554432 123566666665544443 22222322222 36889999999999999999
Q ss_pred HHHH---cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCC----------------
Q 003924 285 LFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPP---------------- 345 (786)
Q Consensus 285 ~L~~---~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~---------------- 345 (786)
.|.. .++.+..+||+|++.+|..++..|++|..+||||||++++|||||+|++||++++|.
T Consensus 231 ~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~ 310 (812)
T PRK11664 231 QLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQ 310 (812)
T ss_pred HHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEE
Confidence 9987 578899999999999999999999999999999999999999999999999988764
Q ss_pred --CHhHHHHHhhccccCCCccEEEEEEecccHH
Q 003924 346 --KPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (786)
Q Consensus 346 --s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~ 376 (786)
|-..|+||+||+||. .+|.||.|+++.+..
T Consensus 311 ~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 311 RISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred eechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 335799999999998 699999999988664
No 57
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=8.6e-38 Score=385.04 Aligned_cols=290 Identities=19% Similarity=0.271 Sum_probs=224.4
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003924 34 VFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (786)
Q Consensus 34 ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l 113 (786)
+...+.......|||+|+.++|.++.|+|++++||||||||+ |++|+...+.. .+.++|||+||++||.|+++.+
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~----~g~~vLIL~PTreLa~Qi~~~l 141 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK----KGKRCYIILPTTLLVIQVAEKI 141 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh----cCCeEEEEeCHHHHHHHHHHHH
Confidence 334444433447999999999999999999999999999997 77787766654 3678999999999999999999
Q ss_pred HHHccCCCCeEE---EEEcCCChhHHH---HHHc-CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc----
Q 003924 114 KELGRYTDLRIS---LLVGGDSMESQF---EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG---- 182 (786)
Q Consensus 114 ~~l~~~~~l~v~---~l~gg~~~~~~~---~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~---- 182 (786)
..++...++.+. +++||.+..++. ..+. ++++|+|+||++|.+++.. +.. ++++|||||||+|++
T Consensus 142 ~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~---l~~-~~~~iVvDEaD~~L~~~k~ 217 (1171)
T TIGR01054 142 SSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE---LGP-KFDFIFVDDVDALLKASKN 217 (1171)
T ss_pred HHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH---hcC-CCCEEEEeChHhhhhcccc
Confidence 999887776544 467887766543 3333 4699999999999988765 222 899999999999998
Q ss_pred -------CChHHH-HHHHH----------------------hhcccCCc--eEEEecc-CcHHHHHHHHhcCCCCcceee
Q 003924 183 -------MGFAEQ-LHKIL----------------------GQLSENRQ--TLLFSAT-LPSALAEFAKAGLRDPHLVRL 229 (786)
Q Consensus 183 -------~gf~~~-l~~Il----------------------~~l~~~~q--~ll~SAT-l~~~l~~~~~~~l~~p~~i~~ 229 (786)
+||..+ +..++ ..++..+| +++|||| +|..+.. ..+.++..+.+
T Consensus 218 vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v 294 (1171)
T TIGR01054 218 VDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEV 294 (1171)
T ss_pred HHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEe
Confidence 788764 44432 33455566 5678999 5655432 23444544555
Q ss_pred ccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcch---hhHHHHHHHHHHcCCCceeecCCCCHHHHH
Q 003924 230 DVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTK---HHVEFLNVLFREEGLEPSVCYGDMDQDARK 306 (786)
Q Consensus 230 ~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~---~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~ 306 (786)
........++.+.|..+.. +...|..++... +.++||||+|+ +.|+.++..|...|+.+..+||++++
T Consensus 295 ~~~~~~~r~I~~~~~~~~~--~~~~L~~ll~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~---- 365 (1171)
T TIGR01054 295 GGGSDTLRNVVDVYVEDED--LKETLLEIVKKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK---- 365 (1171)
T ss_pred cCccccccceEEEEEeccc--HHHHHHHHHHHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----
Confidence 5444445566666655443 244566777654 46899999999 99999999999999999999999974
Q ss_pred HHHHHHhcCCcEEEEE----ecccccccCCCC-cceeEecCCC
Q 003924 307 IHVSRFRARKTMFLIV----TDVAARGIDIPL-LDNVINWDFP 344 (786)
Q Consensus 307 ~~l~~F~~g~~~ILVa----Tdv~arGlDIp~-v~~VI~~d~P 344 (786)
.+++.|++|+++|||| ||+++||||||+ +++|||||+|
T Consensus 366 ~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 366 EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 5899999999999999 599999999999 8999999987
No 58
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=1.1e-37 Score=358.70 Aligned_cols=320 Identities=21% Similarity=0.203 Sum_probs=251.0
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.|. .|+|+|..++|.++.|+ |+.+.||+|||++|++|++.... .|..++||+||++||.|.++++..+..+.
T Consensus 100 lg~-~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al-----~G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL-----AGLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred hCC-CCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh-----cCCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 566 89999999999999998 99999999999999999998754 36789999999999999999999999999
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-HHHHhhcc------------------------CCCCCceeeEEeC
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVE------------------------DMSLKSVEYVVFD 175 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~~~------------------------~l~l~~l~~vV~D 175 (786)
++++.+++||.+.. ......+++|+|+|...| +++|...- ..-...+.++|||
T Consensus 172 Glsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 172 GLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred CCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 99999999997643 344456899999999877 55554420 1113457899999
Q ss_pred Cccccc-c--------------C---ChHHHHHHHHhhc--------------------------------c--------
Q 003924 176 EADCLF-G--------------M---GFAEQLHKILGQL--------------------------------S-------- 197 (786)
Q Consensus 176 Eah~l~-~--------------~---gf~~~l~~Il~~l--------------------------------~-------- 197 (786)
|+|.++ + . .+......+...+ +
T Consensus 250 EvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 250 EADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVR 329 (656)
T ss_pred cccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchH
Confidence 999764 0 0 0100000000000 0
Q ss_pred ---------------------------------------cC--------------------------------------C
Q 003924 198 ---------------------------------------EN--------------------------------------R 200 (786)
Q Consensus 198 ---------------------------------------~~--------------------------------------~ 200 (786)
++ .
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence 00 0
Q ss_pred ceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHH
Q 003924 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVE 280 (786)
Q Consensus 201 q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae 280 (786)
.+.+||||.+....++...+..++..|..... ........++.+...+|...|...+......+.++||||+|+..++
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp--~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se 487 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRP--SQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASE 487 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCC--ccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHH
Confidence 45689999998888888888777655433332 2222334456677788999999999876555788999999999999
Q ss_pred HHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCC---Ccc-----eeEecCCCCCHhHHHH
Q 003924 281 FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP---LLD-----NVINWDFPPKPKIFVH 352 (786)
Q Consensus 281 ~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp---~v~-----~VI~~d~P~s~~~~vQ 352 (786)
.++..|...|+++..+||.+++ |+..+..|..+...||||||+++||+||+ .|. +||+|++|.+...|+|
T Consensus 488 ~L~~~L~~~gi~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~h 565 (656)
T PRK12898 488 RLSALLREAGLPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQ 565 (656)
T ss_pred HHHHHHHHCCCCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHH
Confidence 9999999999999999998654 44555566666667999999999999999 555 9999999999999999
Q ss_pred HhhccccCCCccEEEEEEeccc
Q 003924 353 RVGRAARAGRTGTAFSFVTSED 374 (786)
Q Consensus 353 RvGR~gR~G~~G~ai~lv~~~e 374 (786)
|+||+||+|.+|.+++|++.+|
T Consensus 566 r~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 566 LAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred hcccccCCCCCeEEEEEechhH
Confidence 9999999999999999999866
No 59
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=9e-38 Score=391.50 Aligned_cols=325 Identities=18% Similarity=0.247 Sum_probs=253.7
Q ss_pred HHHHHHHH-CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHH
Q 003924 33 NVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK 111 (786)
Q Consensus 33 ~ll~~l~~-~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~ 111 (786)
++.+.+.+ .|| .|||+|+.+||.++.|+|+++.||||||||++++++.+.. .. .+.++|||+||++|+.|+.+
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~-~~----~g~~aLVl~PTreLa~Qi~~ 140 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFL-AL----KGKKCYIILPTTLLVKQTVE 140 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHH-Hh----cCCeEEEEECHHHHHHHHHH
Confidence 44555555 799 6999999999999999999999999999999666555433 21 36789999999999999999
Q ss_pred HHHHHccCC--CCeEEEEEcCCChhHHHH---HHc-CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc---
Q 003924 112 FTKELGRYT--DLRISLLVGGDSMESQFE---ELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG--- 182 (786)
Q Consensus 112 ~l~~l~~~~--~l~v~~l~gg~~~~~~~~---~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~--- 182 (786)
.++.++... ++.+..++||.+..++.. .+. +.++|+|+||++|.+++... . ..++++|||||||+|++
T Consensus 141 ~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~-~~~i~~iVVDEAD~ml~~~k 217 (1638)
T PRK14701 141 KIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--K-HLKFDFIFVDDVDAFLKASK 217 (1638)
T ss_pred HHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--h-hCCCCEEEEECceecccccc
Confidence 999988765 467778889988776543 343 45999999999998876642 2 26789999999999986
Q ss_pred --------CChHHHHHH----HHh----------------------hcccCCc-eEEEeccCcH--HHHHHHHhcCCCCc
Q 003924 183 --------MGFAEQLHK----ILG----------------------QLSENRQ-TLLFSATLPS--ALAEFAKAGLRDPH 225 (786)
Q Consensus 183 --------~gf~~~l~~----Il~----------------------~l~~~~q-~ll~SATl~~--~l~~~~~~~l~~p~ 225 (786)
+||..++.. |+. .++..+| ++++|||+++ .+..+ +.++.
T Consensus 218 nid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l----~~~~l 293 (1638)
T PRK14701 218 NIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKL----YRELL 293 (1638)
T ss_pred ccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHH----hhcCe
Confidence 688887764 432 2345566 5779999985 33333 35555
Q ss_pred ceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhH---HHHHHHHHHcCCCceeecCCCCH
Q 003924 226 LVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHV---EFLNVLFREEGLEPSVCYGDMDQ 302 (786)
Q Consensus 226 ~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~a---e~l~~~L~~~g~~v~~lhg~l~q 302 (786)
.+.+........++.+.|+.+....+ ..|+.++... +.++||||+|+..+ +.++..|...|+.+..+||+
T Consensus 294 ~f~v~~~~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~--- 366 (1638)
T PRK14701 294 GFEVGSGRSALRNIVDVYLNPEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK--- 366 (1638)
T ss_pred EEEecCCCCCCCCcEEEEEECCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch---
Confidence 56666555555677777776665555 4677777654 46899999998864 89999999999999999995
Q ss_pred HHHHHHHHHHhcCCcEEEEEe----cccccccCCCC-cceeEecCCCC---CHhHHHHHh-------------hccccCC
Q 003924 303 DARKIHVSRFRARKTMFLIVT----DVAARGIDIPL-LDNVINWDFPP---KPKIFVHRV-------------GRAARAG 361 (786)
Q Consensus 303 ~~R~~~l~~F~~g~~~ILVaT----dv~arGlDIp~-v~~VI~~d~P~---s~~~~vQRv-------------GR~gR~G 361 (786)
|..+++.|++|+++||||| ++++||||+|+ |.+|||||+|. +...|.|-. ||++|.|
T Consensus 367 --R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 367 --NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred --HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 8889999999999999999 59999999998 99999999998 777665554 9999999
Q ss_pred CccEEEEEEecccHHHHH
Q 003924 362 RTGTAFSFVTSEDMAYLL 379 (786)
Q Consensus 362 ~~G~ai~lv~~~e~~~l~ 379 (786)
.++.++..+...++..+.
T Consensus 445 ~~~~~~~~~~~~~~~~~~ 462 (1638)
T PRK14701 445 IPIEGVLDVFPEDVEFLR 462 (1638)
T ss_pred CcchhHHHhHHHHHHHHH
Confidence 887777555555544433
No 60
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.4e-37 Score=354.20 Aligned_cols=309 Identities=15% Similarity=0.165 Sum_probs=229.0
Q ss_pred CCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCC
Q 003924 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (786)
Q Consensus 43 ~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l 122 (786)
...|+|+|.++++.++.+.++++++|||||||+++...+. .+... ...++|||+||++|+.|+.+.+..++.....
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~-~~~~~---~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSR-YYLEN---YEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH-HHHhc---CCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 3589999999999999999999999999999997654322 22221 2348999999999999999999998766555
Q ss_pred eEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCce
Q 003924 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202 (786)
Q Consensus 123 ~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ 202 (786)
.+..+.+|.... ..++|+|+||+++..... ..+.++++||+||||++.. ..+..++..++..+++
T Consensus 188 ~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~----~~~~~~~~iIvDEaH~~~~----~~~~~il~~~~~~~~~ 252 (501)
T PHA02558 188 AMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK----EWFDQFGMVIVDECHLFTG----KSLTSIITKLDNCKFK 252 (501)
T ss_pred ceeEEecCcccC-------CCCCEEEeeHHHHhhchh----hhccccCEEEEEchhcccc----hhHHHHHHhhhccceE
Confidence 666677776432 357999999999876442 2367899999999999875 3466777778778899
Q ss_pred EEEeccCcHHHHHHH-HhcCCCCcceeeccccccC----CCce----------------------eee-eecchHHHHHH
Q 003924 203 LLFSATLPSALAEFA-KAGLRDPHLVRLDVDTKIS----PDLK----------------------LAF-FTLRQEEKHAA 254 (786)
Q Consensus 203 ll~SATl~~~l~~~~-~~~l~~p~~i~~~~~~~~~----~~l~----------------------~~~-~~v~~~~k~~~ 254 (786)
++|||||+....... -.++-.|....++...... ..+. ..+ ..+....+...
T Consensus 253 lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~ 332 (501)
T PHA02558 253 FGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKW 332 (501)
T ss_pred EEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHH
Confidence 999999965321111 0111112222211110000 0000 000 11122234444
Q ss_pred HHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEe-cccccccCCC
Q 003924 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-DVAARGIDIP 333 (786)
Q Consensus 255 Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaT-dv~arGlDIp 333 (786)
+..++......+.++||||.+..|++.+++.|...++.+..+||++++.+|..+++.|+.|...||||| +++++|+|+|
T Consensus 333 I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip 412 (501)
T PHA02558 333 IANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIK 412 (501)
T ss_pred HHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccc
Confidence 555555544567889999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred CcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEE
Q 003924 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370 (786)
Q Consensus 334 ~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv 370 (786)
.+++||++++|.+...|+||+||++|.+..+....++
T Consensus 413 ~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 413 NLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred cccEEEEecCCcchhhhhhhhhccccCCCCCceEEEE
Confidence 9999999999999999999999999987654333333
No 61
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=3.8e-38 Score=331.46 Aligned_cols=292 Identities=29% Similarity=0.443 Sum_probs=230.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCC---CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCce
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYT---DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~---~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l 169 (786)
.+.+||+-|+|||++|+++.+++|-..+ .++..+++||.....|...+..+.+|+|+||+|+++.+.. +.+.+.++
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~-g~~~lt~c 364 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK-GLVTLTHC 364 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc-cceeeeee
Confidence 3689999999999999999777775444 5677789999999999999999999999999999999987 56789999
Q ss_pred eeEEeCCccccccCChHHHHHHHHhhccc------CCceEEEeccCcH-HHHHHHHhcCCCCcceeeccccccCCCceee
Q 003924 170 EYVVFDEADCLFGMGFAEQLHKILGQLSE------NRQTLLFSATLPS-ALAEFAKAGLRDPHLVRLDVDTKISPDLKLA 242 (786)
Q Consensus 170 ~~vV~DEah~l~~~gf~~~l~~Il~~l~~------~~q~ll~SATl~~-~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~ 242 (786)
.++|+||+|.++..|+.+.+..+...+|. ..|.++.|||+.. ++..+....+.-|..+.+..+...+..+.+.
T Consensus 365 rFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvHhv 444 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVHHV 444 (725)
T ss_pred EEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhccc
Confidence 99999999999999999988888887763 4589999999843 2233344445556556555544444333322
Q ss_pred eeecchH--H-------------------------------------HHHHHHHHHHHhccCCCcEEEEEcchhhHHHHH
Q 003924 243 FFTLRQE--E-------------------------------------KHAALLYMIREHISSDQQTLIFVSTKHHVEFLN 283 (786)
Q Consensus 243 ~~~v~~~--~-------------------------------------k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~ 283 (786)
...+.+. . +-..-+..++++ .-.+.||||.|+..|+.|.
T Consensus 445 v~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h--~mdkaiifcrtk~dcDnLe 522 (725)
T KOG0349|consen 445 VKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH--AMDKAIIFCRTKQDCDNLE 522 (725)
T ss_pred eeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh--ccCceEEEEeccccchHHH
Confidence 2221110 0 001112222222 3568999999999999999
Q ss_pred HHHHHcC---CCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccC
Q 003924 284 VLFREEG---LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360 (786)
Q Consensus 284 ~~L~~~g---~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~ 360 (786)
.++.+.| ++|+++||+..+.+|+..++.|..+++++|||||+++|||||..+.++||..+|.+...|+||+||+||+
T Consensus 523 r~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 523 RMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred HHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchh
Confidence 9998864 7899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEEecccHHHHHHHHHHhcC
Q 003924 361 GRTGTAFSFVTSEDMAYLLDLHLFLSK 387 (786)
Q Consensus 361 G~~G~ai~lv~~~e~~~l~~l~~~l~~ 387 (786)
.+-|.+|+++........+..+..-++
T Consensus 603 ermglaislvat~~ekvwyh~c~srgr 629 (725)
T KOG0349|consen 603 ERMGLAISLVATVPEKVWYHWCKSRGR 629 (725)
T ss_pred hhcceeEEEeeccchheeehhhhccCC
Confidence 999999999987554444444444443
No 62
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-35 Score=322.43 Aligned_cols=330 Identities=25% Similarity=0.343 Sum_probs=252.0
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCC
Q 003924 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (786)
Q Consensus 42 g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~ 121 (786)
+..+++.+|.......+.+ +++++.|||-|||+++++-+...|... .+ ++|+|+||+-|+.|.++.+.++.....
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~---~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF---GG-KVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc---CC-eEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 4458899999998887777 899999999999999999888888764 34 899999999999999999999887777
Q ss_pred CeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCc
Q 003924 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (786)
Q Consensus 122 l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q 201 (786)
-.++.++|....++....+ ....|+|+||+.+.+-+.. +.+++.++.+||||||||.......-.+.........++.
T Consensus 87 ~~i~~ltGev~p~~R~~~w-~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ 164 (542)
T COG1111 87 DEIAALTGEVRPEEREELW-AKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPL 164 (542)
T ss_pred hheeeecCCCChHHHHHHH-hhCCEEEeccHHHHhHHhc-CccChHHceEEEechhhhccCcchHHHHHHHHHHhccCce
Confidence 7889999988877665554 4589999999999888887 6899999999999999998765444444444444456788
Q ss_pred eEEEeccCcHHHH---HHHHhcCCCCcceeeccccccCC---Cceeeeeecc----------------------------
Q 003924 202 TLLFSATLPSALA---EFAKAGLRDPHLVRLDVDTKISP---DLKLAFFTLR---------------------------- 247 (786)
Q Consensus 202 ~ll~SATl~~~l~---~~~~~~l~~p~~i~~~~~~~~~~---~l~~~~~~v~---------------------------- 247 (786)
++++||||..+.. +.+...--+.+.++...+....+ .+...++.+.
T Consensus 165 ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~ 244 (542)
T COG1111 165 ILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGV 244 (542)
T ss_pred EEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 9999999965444 33333222222221110000000 0000000000
Q ss_pred --------------------------h-----------------------------------------------------
Q 003924 248 --------------------------Q----------------------------------------------------- 248 (786)
Q Consensus 248 --------------------------~----------------------------------------------------- 248 (786)
+
T Consensus 245 ~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l 324 (542)
T COG1111 245 IESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSL 324 (542)
T ss_pred eeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHH
Confidence 0
Q ss_pred ----------------------HHHHHHHHHHHHHhc--cCCCcEEEEEcchhhHHHHHHHHHHcCCCce-eec------
Q 003924 249 ----------------------EEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEGLEPS-VCY------ 297 (786)
Q Consensus 249 ----------------------~~k~~~Ll~lL~~~~--~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~-~lh------ 297 (786)
..|+..+..++.+.+ ..+.++|||++.++.++.+..+|...+..+. .+.
T Consensus 325 ~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~ 404 (542)
T COG1111 325 LADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASRE 404 (542)
T ss_pred hcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccc
Confidence 003344444555444 3457999999999999999999999988774 333
Q ss_pred --CCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecc--
Q 003924 298 --GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-- 373 (786)
Q Consensus 298 --g~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~-- 373 (786)
.+|+|.++.++++.|++|+++|||||++++.|||||.+|.||.|++.+|+..++||.|||||. +.|.+|+|++.+
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gtr 483 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGTR 483 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCch
Confidence 369999999999999999999999999999999999999999999999999999999999996 899999999997
Q ss_pred cHHHHH
Q 003924 374 DMAYLL 379 (786)
Q Consensus 374 e~~~l~ 379 (786)
|..|+.
T Consensus 484 deayy~ 489 (542)
T COG1111 484 DEAYYY 489 (542)
T ss_pred HHHHHH
Confidence 555544
No 63
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=9.6e-37 Score=338.09 Aligned_cols=299 Identities=22% Similarity=0.269 Sum_probs=211.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHH-ccCCCCeEEEEEcCCCh-------
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL-GRYTDLRISLLVGGDSM------- 133 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l-~~~~~l~v~~l~gg~~~------- 133 (786)
++++.||||||||++|++|++..+... .+.+++|++|+++|+.|+++.+..+ +. .+..++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~---~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~ 73 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ---KADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMG 73 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC---CCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccC
Confidence 589999999999999999999876542 3568999999999999999998886 43 23334443221
Q ss_pred -----hHHHHHHc------CCCCEEEECcHHHHHHHhh-ccC--CCCC--ceeeEEeCCccccccCChHHHHHHHHhhcc
Q 003924 134 -----ESQFEELA------QNPDIIIATPGRLMHHLSE-VED--MSLK--SVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (786)
Q Consensus 134 -----~~~~~~l~------~~~dIiV~Tpgrll~~l~~-~~~--l~l~--~l~~vV~DEah~l~~~gf~~~l~~Il~~l~ 197 (786)
........ -.++|+|+||+.+++.+.. ... +.+. ..++|||||+|.+.+.++.. +..++..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~ 152 (358)
T TIGR01587 74 DSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLK 152 (358)
T ss_pred CchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHH
Confidence 11111111 2367999999999877654 111 1111 23789999999999865443 566665554
Q ss_pred -cCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeec--chHHHHHHHHHHHHHhccCCCcEEEEEc
Q 003924 198 -ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL--RQEEKHAALLYMIREHISSDQQTLIFVS 274 (786)
Q Consensus 198 -~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v--~~~~k~~~Ll~lL~~~~~~~~k~IVF~~ 274 (786)
.+.|+++||||+|..+..++......+.....+.... .....+.+..+ ....+...+..++.. ...+.++||||+
T Consensus 153 ~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~lVf~~ 230 (358)
T TIGR01587 153 DNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKEE-RRFERHRFIKIESDKVGEISSLERLLEF-IKKGGKIAIIVN 230 (358)
T ss_pred HcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCccc-cccccccceeeccccccCHHHHHHHHHH-hhCCCeEEEEEC
Confidence 4789999999999888888766543322211111100 00011222111 112334444445433 345789999999
Q ss_pred chhhHHHHHHHHHHcCC--CceeecCCCCHHHHHH----HHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHh
Q 003924 275 TKHHVEFLNVLFREEGL--EPSVCYGDMDQDARKI----HVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPK 348 (786)
Q Consensus 275 t~~~ae~l~~~L~~~g~--~v~~lhg~l~q~~R~~----~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~ 348 (786)
|+++++.++..|.+.+. .+..+||++++.+|.. +++.|+++...||||||++++||||| +++||++..| +.
T Consensus 231 t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~ 307 (358)
T TIGR01587 231 TVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--ID 307 (358)
T ss_pred CHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HH
Confidence 99999999999988766 4899999999999976 48999999999999999999999996 7899988766 68
Q ss_pred HHHHHhhccccCCCc----cEEEEEEecc
Q 003924 349 IFVHRVGRAARAGRT----GTAFSFVTSE 373 (786)
Q Consensus 349 ~~vQRvGR~gR~G~~----G~ai~lv~~~ 373 (786)
.|+||+||+||.|+. |.+++|....
T Consensus 308 ~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 308 SLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 999999999998864 3666666544
No 64
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=2.6e-36 Score=354.28 Aligned_cols=322 Identities=20% Similarity=0.236 Sum_probs=243.1
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.|. .|+++|..+++.++.|+ |+.+.||+|||++|++|++..... |.+++|++||++||.|.++++..+..+.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~-----G~~v~VvTpt~~LA~qd~e~~~~l~~~l 146 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE-----GKGVHLITVNDYLAKRDAEEMGQVYEFL 146 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc-----CCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 577 89999999999998886 999999999999999999855443 6789999999999999999999999999
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-HHHHhhc-----cCCCCCceeeEEeCCcccccc------------
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFG------------ 182 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~~-----~~l~l~~l~~vV~DEah~l~~------------ 182 (786)
++++++++||.+...+... ...++|+|+||++| ++++... ....+..+.++||||||+++=
T Consensus 147 Gl~v~~i~g~~~~~~~r~~-~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~ 225 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKA-IYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGK 225 (790)
T ss_pred CCeEEEEeCCCCcHHHHHH-hcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCC
Confidence 9999999999884333333 34699999999999 5555541 113467889999999998761
Q ss_pred ----CChHHHHHHHHhhcccC--------C--------------------------------------------------
Q 003924 183 ----MGFAEQLHKILGQLSEN--------R-------------------------------------------------- 200 (786)
Q Consensus 183 ----~gf~~~l~~Il~~l~~~--------~-------------------------------------------------- 200 (786)
..+...+..++..+... .
T Consensus 226 ~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dY 305 (790)
T PRK09200 226 PRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDY 305 (790)
T ss_pred CccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcE
Confidence 01122222222222110 0
Q ss_pred -----------------------------------------------------------ceEEEeccCcHHHHHHHHhcC
Q 003924 201 -----------------------------------------------------------QTLLFSATLPSALAEFAKAGL 221 (786)
Q Consensus 201 -----------------------------------------------------------q~ll~SATl~~~l~~~~~~~l 221 (786)
.+.+||+|....-.+|...|-
T Consensus 306 iV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~ 385 (790)
T PRK09200 306 IVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYN 385 (790)
T ss_pred EEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhC
Confidence 233444444333333333221
Q ss_pred CCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCC
Q 003924 222 RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (786)
Q Consensus 222 ~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~ 301 (786)
- ..+.+....+....-....+.+...+|...|+..+......+.++||||+|+..++.++..|...|+++..+||.+.
T Consensus 386 l--~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~ 463 (790)
T PRK09200 386 M--EVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNA 463 (790)
T ss_pred C--cEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCcc
Confidence 1 11111111110000011233456678999999999876567889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecccccccCC---CCcc-----eeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecc
Q 003924 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDI---PLLD-----NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (786)
Q Consensus 302 q~~R~~~l~~F~~g~~~ILVaTdv~arGlDI---p~v~-----~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~ 373 (786)
+.++..+...+..| .|+||||+++||+|| |.|. +||+|++|.+...|+||+||+||+|.+|.+++|++.+
T Consensus 464 ~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 464 AKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred HHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 98888777777666 799999999999999 6898 9999999999999999999999999999999999986
Q ss_pred cH
Q 003924 374 DM 375 (786)
Q Consensus 374 e~ 375 (786)
|.
T Consensus 542 D~ 543 (790)
T PRK09200 542 DD 543 (790)
T ss_pred HH
Confidence 63
No 65
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=7.5e-35 Score=338.87 Aligned_cols=322 Identities=21% Similarity=0.212 Sum_probs=232.9
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.|. .|+++|..++. ..++..++.++||+|||++|++|++..... |..++||+|+++||.|+++++..+..++
T Consensus 67 lgl-rpydVQlig~l--~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~-----g~~V~VVTpn~yLA~Rdae~m~~l~~~L 138 (762)
T TIGR03714 67 LGM-FPYDVQVLGAI--VLHQGNIAEMKTGEGKTLTATMPLYLNALT-----GKGAMLVTTNDYLAKRDAEEMGPVYEWL 138 (762)
T ss_pred cCC-CccHHHHHHHH--HhcCCceeEecCCcchHHHHHHHHHHHhhc-----CCceEEeCCCHHHHHHHHHHHHHHHhhc
Confidence 354 45555555444 444557999999999999999998766543 4569999999999999999999999999
Q ss_pred CCeEEEEEcCCC---hhHHHHHHcCCCCEEEECcHHH-HHHHhhc-----cCCCCCceeeEEeCCccccccC--------
Q 003924 121 DLRISLLVGGDS---MESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFGM-------- 183 (786)
Q Consensus 121 ~l~v~~l~gg~~---~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~~-----~~l~l~~l~~vV~DEah~l~~~-------- 183 (786)
++.+.+++++.. ..........+++|+++||++| ++++... ....+..+.++|+||||.++-.
T Consensus 139 GLsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartplii 218 (762)
T TIGR03714 139 GLTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVI 218 (762)
T ss_pred CCcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeee
Confidence 999999887632 2223334446899999999999 5655431 1244678999999999988511
Q ss_pred --------ChHHHHHHHHhhcccC--------C-----------------------------------------------
Q 003924 184 --------GFAEQLHKILGQLSEN--------R----------------------------------------------- 200 (786)
Q Consensus 184 --------gf~~~l~~Il~~l~~~--------~----------------------------------------------- 200 (786)
.+...+..++..+... .
T Consensus 219 sg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 298 (762)
T TIGR03714 219 SGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRN 298 (762)
T ss_pred eCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcC
Confidence 1112222222222111 1
Q ss_pred --------------------------------------------------------------ceEEEeccCcHHHHHHHH
Q 003924 201 --------------------------------------------------------------QTLLFSATLPSALAEFAK 218 (786)
Q Consensus 201 --------------------------------------------------------------q~ll~SATl~~~l~~~~~ 218 (786)
.+.+||+|....-.+|..
T Consensus 299 ~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~ 378 (762)
T TIGR03714 299 KDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIE 378 (762)
T ss_pred CceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHH
Confidence 233444444333333433
Q ss_pred hcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecC
Q 003924 219 AGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYG 298 (786)
Q Consensus 219 ~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg 298 (786)
.|-- .++.+.........-....+.+...+|..+++..+.+....+.++||||+|+..++.++..|...|+++..+||
T Consensus 379 iY~l--~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a 456 (762)
T TIGR03714 379 TYSL--SVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNA 456 (762)
T ss_pred HhCC--CEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 2211 11111111111001111234455678999999999887677899999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEEecccccccCCC---------CcceeEecCCCCCHhHHHHHhhccccCCCccEEEEE
Q 003924 299 DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP---------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369 (786)
Q Consensus 299 ~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp---------~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~l 369 (786)
.+++.++..+...|+.| .|+||||+++||+||| ++.+|++|++|..... +||+||+||+|.+|.++.|
T Consensus 457 ~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~ 533 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFF 533 (762)
T ss_pred CChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEE
Confidence 99999888877766666 7999999999999999 8999999999987766 9999999999999999999
Q ss_pred EecccH
Q 003924 370 VTSEDM 375 (786)
Q Consensus 370 v~~~e~ 375 (786)
++.+|.
T Consensus 534 is~eD~ 539 (762)
T TIGR03714 534 VSLEDD 539 (762)
T ss_pred Eccchh
Confidence 998764
No 66
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=2.2e-34 Score=333.00 Aligned_cols=321 Identities=23% Similarity=0.274 Sum_probs=244.1
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
+|. .|+++|..+.+.++.|+ |+.++||+|||++|++|++-.... |.+++|++||++||.|.++++..+..++
T Consensus 53 lg~-~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~-----G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT-----GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred hCC-CccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh-----CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 576 89999999999888876 999999999999999999633332 4469999999999999999999999999
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-HHHHhhcc-----CCCCCceeeEEeCCccccccC---------C-
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVE-----DMSLKSVEYVVFDEADCLFGM---------G- 184 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~~~-----~l~l~~l~~vV~DEah~l~~~---------g- 184 (786)
++++.+++||.+........ .++|+|+||++| ++++...- .+.+..+.++|+||+|+++-. |
T Consensus 125 GLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~ 202 (745)
T TIGR00963 125 GLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGP 202 (745)
T ss_pred CCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCC
Confidence 99999999998876554443 589999999999 88887631 246788999999999987620 1
Q ss_pred ------hHHHHHHHHhhccc--------CC--------------------------------------------------
Q 003924 185 ------FAEQLHKILGQLSE--------NR-------------------------------------------------- 200 (786)
Q Consensus 185 ------f~~~l~~Il~~l~~--------~~-------------------------------------------------- 200 (786)
.......|...+.. ..
T Consensus 203 ~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dY 282 (745)
T TIGR00963 203 AEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDY 282 (745)
T ss_pred CCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 11111111111110 00
Q ss_pred -----------------------------------------------------------ceEEEeccCcHHHHHHHHhcC
Q 003924 201 -----------------------------------------------------------QTLLFSATLPSALAEFAKAGL 221 (786)
Q Consensus 201 -----------------------------------------------------------q~ll~SATl~~~l~~~~~~~l 221 (786)
.+.+||+|......+|...|-
T Consensus 283 iV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 362 (745)
T TIGR00963 283 IVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYN 362 (745)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhC
Confidence 223444444333333333321
Q ss_pred CCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCC
Q 003924 222 RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (786)
Q Consensus 222 ~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~ 301 (786)
-+ ++.+.........-....+.....+|..+++..+.+....+.++||||+|+..++.++..|...|+++..+|+.
T Consensus 363 l~--vv~IPtnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~-- 438 (745)
T TIGR00963 363 LE--VVVVPTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK-- 438 (745)
T ss_pred CC--EEEeCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--
Confidence 11 11111111100000111223335668888888887777789999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecccccccCCCC-------cceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEeccc
Q 003924 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPL-------LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (786)
Q Consensus 302 q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~-------v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e 374 (786)
+.+|+..+..|..+...|+|||++|+||+||+. ..+||++++|.+...|.||+||+||+|.+|.+..|++.+|
T Consensus 439 q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 439 NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 889999999999999999999999999999998 5599999999999999999999999999999999999876
Q ss_pred H
Q 003924 375 M 375 (786)
Q Consensus 375 ~ 375 (786)
.
T Consensus 519 ~ 519 (745)
T TIGR00963 519 N 519 (745)
T ss_pred H
Confidence 3
No 67
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=4e-34 Score=338.84 Aligned_cols=394 Identities=19% Similarity=0.190 Sum_probs=272.5
Q ss_pred CChHHHHHHHHHHHcC---CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCC
Q 003924 45 VPTPIQRKTMPLILSG---ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g---~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~ 121 (786)
.||+.|.++++.++.+ +++++.|+||||||.+|+.++.+.+.. |.++|||+||++|+.|+.+.+++. ++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~-----g~~vLvLvPt~~L~~Q~~~~l~~~---fg 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ-----GKQALVLVPEIALTPQMLARFRAR---FG 215 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc-----CCeEEEEeCcHHHHHHHHHHHHHH---hC
Confidence 5899999999999984 789999999999999999888777653 678999999999999999988764 25
Q ss_pred CeEEEEEcCCChhHHHHH----HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCC-----hHHHHHHH
Q 003924 122 LRISLLVGGDSMESQFEE----LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-----FAEQLHKI 192 (786)
Q Consensus 122 l~v~~l~gg~~~~~~~~~----l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~g-----f~~~l~~I 192 (786)
..+..++|+.+..+.... ..+.++|+|+|++.++ +.+.++++|||||+|...-.. |...-..+
T Consensus 216 ~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~ 287 (679)
T PRK05580 216 APVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAV 287 (679)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCccccccCcCCCCcHHHHHH
Confidence 788999998876554332 3457899999998873 557889999999999765321 21222233
Q ss_pred HhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHH-------HHHHHHHHHHHhccC
Q 003924 193 LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-------KHAALLYMIREHISS 265 (786)
Q Consensus 193 l~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~-------k~~~Ll~lL~~~~~~ 265 (786)
+.....+.++|++|||++......+.. +...++.+.............++.+.... -...|+..+.+.+..
T Consensus 288 ~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~ 365 (679)
T PRK05580 288 VRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLER 365 (679)
T ss_pred HHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHc
Confidence 444456899999999987554443332 33444444433221112222233322211 225677788888888
Q ss_pred CCcEEEEEcchh------------------------------------------------------------hHHHHHHH
Q 003924 266 DQQTLIFVSTKH------------------------------------------------------------HVEFLNVL 285 (786)
Q Consensus 266 ~~k~IVF~~t~~------------------------------------------------------------~ae~l~~~ 285 (786)
+.++|||+|++. .++.+.+.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~ 445 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEE 445 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHH
Confidence 899999988521 34566777
Q ss_pred HHHc--CCCceeecCCCCH--HHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEec--CCCCC----------HhH
Q 003924 286 FREE--GLEPSVCYGDMDQ--DARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINW--DFPPK----------PKI 349 (786)
Q Consensus 286 L~~~--g~~v~~lhg~l~q--~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~--d~P~s----------~~~ 349 (786)
|... +..+..+|+++.+ .+++.+++.|++|+.+|||+|+++++|+|+|++++|+.+ |.+.+ ...
T Consensus 446 l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~ 525 (679)
T PRK05580 446 LAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQL 525 (679)
T ss_pred HHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHH
Confidence 7765 6788999999874 578899999999999999999999999999999998644 44432 257
Q ss_pred HHHHhhccccCCCccEEEEEEecc-----------cHHHHHHHHHHhcCCCCCCCCHHH------------HHhhhhhHH
Q 003924 350 FVHRVGRAARAGRTGTAFSFVTSE-----------DMAYLLDLHLFLSKPIRAAPSEEE------------VLLDMDGVM 406 (786)
Q Consensus 350 ~vQRvGR~gR~G~~G~ai~lv~~~-----------e~~~l~~l~~~l~~~~~~~p~~e~------------~~~~~~~~~ 406 (786)
|+|++||+||.+..|.+++..... |...|..-++..++.+..+|.... +...+..+.
T Consensus 526 l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~~~~d~~~f~~~El~~R~~~~~PPf~~l~~i~~~~~~~~~~~~~~~~~~ 605 (679)
T PRK05580 526 LTQVAGRAGRAEKPGEVLIQTYHPEHPVIQALLAQDYDAFAEQELEERRAAGYPPFGRLALLRASAKDEEKAEKFAQQLA 605 (679)
T ss_pred HHHHHhhccCCCCCCEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHhcCCCCHHHhhEeEEecCCHHHHHHHHHHHH
Confidence 899999999999999998765432 233445555556666777774432 222223333
Q ss_pred HHHHHHH-hcCCccccccchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 003924 407 SKIDQAI-ANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQRTCTNAF 456 (786)
Q Consensus 407 ~~i~~~~-~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~l~~~~~~~~ 456 (786)
..+...+ ..+..++|+.|.++......+...++-+......+++......
T Consensus 606 ~~l~~~~~~~~~~vlGp~~~~i~k~~~~yr~~ilik~~~~~~~~~~l~~~~ 656 (679)
T PRK05580 606 ALLPNLLPLLDVEVLGPAPAPIAKIAGRYRYQLLLKSPSRADLQKLLRAWL 656 (679)
T ss_pred HHHHhhcccCCeEEeCCcccccHhhcCeeEEEEEEEeCCHHHHHHHHHHHH
Confidence 3333322 1234589999999988876666555544433344444443333
No 68
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.2e-34 Score=327.82 Aligned_cols=320 Identities=24% Similarity=0.364 Sum_probs=256.1
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.||..++|-|.++|..+++|+|+++..|||+||++||.+|.+-. .| -+|||+|..+|.....+.+...+
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-------~G-~TLVVSPLiSLM~DQV~~l~~~G--- 81 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-------EG-LTLVVSPLISLMKDQVDQLEAAG--- 81 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-------CC-CEEEECchHHHHHHHHHHHHHcC---
Confidence 59999999999999999999999999999999999999998854 24 49999999999998888887765
Q ss_pred CCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCC--hHHHHHHH--
Q 003924 121 DLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG--FAEQLHKI-- 192 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~g--f~~~l~~I-- 192 (786)
+.+..+.+..+.++....+ .+..++++-+|++|..--.. +.+.--.+.++||||||++++|| |...+..+
T Consensus 82 -i~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~ 159 (590)
T COG0514 82 -IRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGR 159 (590)
T ss_pred -ceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHH-HHHHhCCCceEEechHHHHhhcCCccCHhHHHHHH
Confidence 8888888887776654433 34589999999998643221 13345567899999999999998 76655554
Q ss_pred -HhhcccCCceEEEeccCcHHHHHHHHhcCC--CCcceeeccccccCCCceeeeeecc-hHHHHHHHHHHHHH-hccCCC
Q 003924 193 -LGQLSENRQTLLFSATLPSALAEFAKAGLR--DPHLVRLDVDTKISPDLKLAFFTLR-QEEKHAALLYMIRE-HISSDQ 267 (786)
Q Consensus 193 -l~~l~~~~q~ll~SATl~~~l~~~~~~~l~--~p~~i~~~~~~~~~~~l~~~~~~v~-~~~k~~~Ll~lL~~-~~~~~~ 267 (786)
...+| +.+++.+|||-++.+..-+...|. .+..+.... ..+++........ ...+.. +|.+ .....+
T Consensus 160 l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf---dRpNi~~~v~~~~~~~~q~~----fi~~~~~~~~~ 231 (590)
T COG0514 160 LRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSF---DRPNLALKVVEKGEPSDQLA----FLATVLPQLSK 231 (590)
T ss_pred HHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC---CCchhhhhhhhcccHHHHHH----HHHhhccccCC
Confidence 55565 889999999998888776665543 443333221 1233322221111 122222 3332 223456
Q ss_pred cEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCH
Q 003924 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKP 347 (786)
Q Consensus 268 k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~ 347 (786)
..||||.|+..|+.++..|...|+.+..+|++|+.++|..+.+.|..++..|+|||.+.+.|||-|++.+|||||+|.+.
T Consensus 232 ~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~ 311 (590)
T COG0514 232 SGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSI 311 (590)
T ss_pred CeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhccccCCCccEEEEEEecccHHHHHHH
Q 003924 348 KIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (786)
Q Consensus 348 ~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (786)
..|.|-+||+||.|.+..|++|+++.|......+
T Consensus 312 EsYyQE~GRAGRDG~~a~aill~~~~D~~~~~~~ 345 (590)
T COG0514 312 ESYYQETGRAGRDGLPAEAILLYSPEDIRWQRYL 345 (590)
T ss_pred HHHHHHHhhccCCCCcceEEEeeccccHHHHHHH
Confidence 9999999999999999999999999997655443
No 69
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.3e-33 Score=340.75 Aligned_cols=326 Identities=24% Similarity=0.322 Sum_probs=243.2
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCC
Q 003924 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (786)
Q Consensus 42 g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~ 121 (786)
+..+|+++|..++..++.+ ++++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.++.+....+
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~----~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK----KGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh----CCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 4458999999999988887 99999999999999999999887742 456899999999999999999998765555
Q ss_pred CeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCc
Q 003924 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (786)
Q Consensus 122 l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q 201 (786)
..+..++|+.+... ...+...++|+|+||+.+...+.. ..+.+.++++|||||||++........+............
T Consensus 87 ~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~ 164 (773)
T PRK13766 87 EKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPL 164 (773)
T ss_pred ceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCCE
Confidence 67888888776554 344456789999999999877654 4677889999999999998754333333333333344667
Q ss_pred eEEEeccCcH---HHHHHHHhcCCC------------------Ccc--eeeccc------------------------cc
Q 003924 202 TLLFSATLPS---ALAEFAKAGLRD------------------PHL--VRLDVD------------------------TK 234 (786)
Q Consensus 202 ~ll~SATl~~---~l~~~~~~~l~~------------------p~~--i~~~~~------------------------~~ 234 (786)
+++|||||.. .+..++...... +.. +.+... ..
T Consensus 165 il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~ 244 (773)
T PRK13766 165 VLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGV 244 (773)
T ss_pred EEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999999832 222222211100 000 000000 00
Q ss_pred cC-CC--c------------e--------e------------------------------ee------------------
Q 003924 235 IS-PD--L------------K--------L------------------------------AF------------------ 243 (786)
Q Consensus 235 ~~-~~--l------------~--------~------------------------------~~------------------ 243 (786)
.. .. + . . .|
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~ 324 (773)
T PRK13766 245 IVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASK 324 (773)
T ss_pred cccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHH
Confidence 00 00 0 0 0 00
Q ss_pred ----------------eecchHHHHHHHHHHHHHhc--cCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCC------
Q 003924 244 ----------------FTLRQEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGD------ 299 (786)
Q Consensus 244 ----------------~~v~~~~k~~~Ll~lL~~~~--~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~------ 299 (786)
.......|...|..+|.+.+ ..+.++||||+++..|++++..|...++.+..+||.
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~ 404 (773)
T PRK13766 325 RLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGD 404 (773)
T ss_pred HHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccccccc
Confidence 00011235555666666544 467899999999999999999999999999999986
Q ss_pred --CCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccH
Q 003924 300 --MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (786)
Q Consensus 300 --l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~ 375 (786)
|++.+|..++.+|++|+.+|||+|+++++|+|+|.+++||+||+|+++..|+||+||+||.|. |.+|.++..+..
T Consensus 405 ~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~l~~~~t~ 481 (773)
T PRK13766 405 KGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVVLIAKGTR 481 (773)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEEEEeCCCh
Confidence 999999999999999999999999999999999999999999999999999999999999864 899999987543
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=1.6e-33 Score=311.38 Aligned_cols=290 Identities=19% Similarity=0.218 Sum_probs=204.6
Q ss_pred HHHHHHHHHHcCCc--EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccC----CCC
Q 003924 49 IQRKTMPLILSGAD--VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY----TDL 122 (786)
Q Consensus 49 iQ~~aip~il~g~d--vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~----~~l 122 (786)
+|.++++.+..+.+ +++.||||||||++|++|++.. +.+++|++|+++|+.|+++.+..+... .++
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~--------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG--------ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc--------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 59999999999875 7889999999999999998842 335899999999999999988876533 245
Q ss_pred eEEEEEcCCChhH---HH------------------HHHcCCCCEEEECcHHHHHHHhhcc---C-C---CCCceeeEEe
Q 003924 123 RISLLVGGDSMES---QF------------------EELAQNPDIIIATPGRLMHHLSEVE---D-M---SLKSVEYVVF 174 (786)
Q Consensus 123 ~v~~l~gg~~~~~---~~------------------~~l~~~~dIiV~Tpgrll~~l~~~~---~-l---~l~~l~~vV~ 174 (786)
.+..+.|. ...+ .. ......|.|++|||+.|..++.... . . .+.++++|||
T Consensus 73 ~v~~~~g~-~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~ 151 (357)
T TIGR03158 73 NLLHVSKA-TLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIF 151 (357)
T ss_pred eEEEecCC-chHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEE
Confidence 55555553 2221 00 0112468899999998876554310 0 1 2578999999
Q ss_pred CCccccccCC-----hHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhc--CCCCcceeecccc-----------c--
Q 003924 175 DEADCLFGMG-----FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAG--LRDPHLVRLDVDT-----------K-- 234 (786)
Q Consensus 175 DEah~l~~~g-----f~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~--l~~p~~i~~~~~~-----------~-- 234 (786)
||+|.+...+ +...+..++.......+++++|||+|+.+...+... +..|..+ +.... .
T Consensus 152 DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~-v~g~~~~~~~~~~~~~~~~ 230 (357)
T TIGR03158 152 DEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAP-IDGEKYQFPDNPELEADNK 230 (357)
T ss_pred ecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeee-ecCcccccCCChhhhcccc
Confidence 9999977432 222344444444456799999999999888877654 4444222 11110 0
Q ss_pred ------cCCCceeeeeecchHHHHHH---HHHHHHHhc--cCCCcEEEEEcchhhHHHHHHHHHHcC--CCceeecCCCC
Q 003924 235 ------ISPDLKLAFFTLRQEEKHAA---LLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEG--LEPSVCYGDMD 301 (786)
Q Consensus 235 ------~~~~l~~~~~~v~~~~k~~~---Ll~lL~~~~--~~~~k~IVF~~t~~~ae~l~~~L~~~g--~~v~~lhg~l~ 301 (786)
..+.+.+.+.. ....+... ++..+.+.+ ..+.++||||+|+.+++.++..|...+ +.+..+||.++
T Consensus 231 ~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~ 309 (357)
T TIGR03158 231 TQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAP 309 (357)
T ss_pred ccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCC
Confidence 11234444443 22233333 333333322 246789999999999999999999865 56788999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccc
Q 003924 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAA 358 (786)
Q Consensus 302 q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~g 358 (786)
+..|... ++.+||||||++++|||||.+ +|| ++ |.++..|+||+||+|
T Consensus 310 ~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 310 KKDRERA------MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred HHHHHHh------ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 9988654 478999999999999999986 666 55 889999999999997
No 71
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=6.1e-33 Score=337.06 Aligned_cols=304 Identities=18% Similarity=0.258 Sum_probs=217.6
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC----cHHHHHHHHHHHHH-HccCCC
Q 003924 47 TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP----TRDLALQTLKFTKE-LGRYTD 121 (786)
Q Consensus 47 tpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P----treLa~Q~~~~l~~-l~~~~~ 121 (786)
+.+-.+.++.|..++.++++|+||||||+ .+|.+...... .....+++.-| +++||.|+++++.. ++...|
T Consensus 76 ~~~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~--g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VG 151 (1294)
T PRK11131 76 SQKKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR--GVKGLIGHTQPRRLAARTVANRIAEELETELGGCVG 151 (1294)
T ss_pred HHHHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC--CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceec
Confidence 33444556666677778899999999999 57855332211 11112333346 56888888887764 555444
Q ss_pred CeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcc-ccccCChHHH-HHHHHhhcccC
Q 003924 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD-CLFGMGFAEQ-LHKILGQLSEN 199 (786)
Q Consensus 122 l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah-~l~~~gf~~~-l~~Il~~l~~~ 199 (786)
+.+ . .+.+ ...++.|+|+|||+|++++.. +..++++++||||||| ++++++|... +..++.. .++
T Consensus 152 Y~v----r---f~~~---~s~~t~I~v~TpG~LL~~l~~--d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~-rpd 218 (1294)
T PRK11131 152 YKV----R---FNDQ---VSDNTMVKLMTDGILLAEIQQ--DRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR-RPD 218 (1294)
T ss_pred eee----c---Cccc---cCCCCCEEEEChHHHHHHHhc--CCccccCcEEEecCccccccccchHHHHHHHhhhc-CCC
Confidence 432 1 1112 235789999999999999876 4558999999999999 6889888754 3333332 246
Q ss_pred CceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecch------HHHHHHHHHHHHHhc-cCCCcEEEE
Q 003924 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ------EEKHAALLYMIREHI-SSDQQTLIF 272 (786)
Q Consensus 200 ~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~------~~k~~~Ll~lL~~~~-~~~~k~IVF 272 (786)
.|+|+||||++.. .|.+.+.+.| ++.+.... ..+.+.|..+.. .+....++..+.... ...+.+|||
T Consensus 219 lKvILmSATid~e--~fs~~F~~ap-vI~V~Gr~---~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVF 292 (1294)
T PRK11131 219 LKVIITSATIDPE--RFSRHFNNAP-IIEVSGRT---YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIF 292 (1294)
T ss_pred ceEEEeeCCCCHH--HHHHHcCCCC-EEEEcCcc---ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 8999999999753 5665554444 45554332 224555554432 223344444443321 345789999
Q ss_pred EcchhhHHHHHHHHHHcCCC---ceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecC-------
Q 003924 273 VSTKHHVEFLNVLFREEGLE---PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD------- 342 (786)
Q Consensus 273 ~~t~~~ae~l~~~L~~~g~~---v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d------- 342 (786)
|++...++.+++.|...++. +..+||+|++.+|..++.. .|..+|||||+++++|||||++++||+++
T Consensus 293 Lpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Y 370 (1294)
T PRK11131 293 MSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRY 370 (1294)
T ss_pred cCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccc
Confidence 99999999999999988765 5689999999999999876 47889999999999999999999999986
Q ss_pred --------CC---CCHhHHHHHhhccccCCCccEEEEEEecccHH
Q 003924 343 --------FP---PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (786)
Q Consensus 343 --------~P---~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~ 376 (786)
+| .|...|.||+||+||. .+|.||.|+++.++.
T Consensus 371 d~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 371 SYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFL 414 (1294)
T ss_pred ccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHH
Confidence 33 4557899999999999 689999999987654
No 72
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.9e-33 Score=304.18 Aligned_cols=340 Identities=23% Similarity=0.288 Sum_probs=268.8
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC
Q 003924 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (786)
Q Consensus 23 ~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~-il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P 101 (786)
-+.+.|.+++.+..-|...||..+.|+|..|+.. ++.|.|.++.++|+||||++.-++-+..+.. .|.+.|+|+|
T Consensus 194 ~~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~----~g~KmlfLvP 269 (830)
T COG1202 194 VPVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS----GGKKMLFLVP 269 (830)
T ss_pred ccccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh----CCCeEEEEeh
Confidence 4678899999999999999999999999999976 7899999999999999999998888888776 3788999999
Q ss_pred cHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHH----HHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCc
Q 003924 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF----EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (786)
Q Consensus 102 treLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~----~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEa 177 (786)
..+||+|-++.|++--...++.+..-+|.......- ..-...+||||+|++-+-+++.. .-.+.+++.|||||+
T Consensus 270 LVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRt--g~~lgdiGtVVIDEi 347 (830)
T COG1202 270 LVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRT--GKDLGDIGTVVIDEI 347 (830)
T ss_pred hHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHc--CCcccccceEEeeee
Confidence 999999999988875577889998888854433221 11234689999999999777765 367899999999999
Q ss_pred cccccCChHHHHHHH---HhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHH
Q 003924 178 DCLFGMGFAEQLHKI---LGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA 254 (786)
Q Consensus 178 h~l~~~gf~~~l~~I---l~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~ 254 (786)
|.+-+......+.-+ +..+-+..|.|.+|||..+. .++++..--.+ +..+ ....|.-.+..+.-...+|...
T Consensus 348 HtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~l--V~y~--~RPVplErHlvf~~~e~eK~~i 422 (830)
T COG1202 348 HTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKL--VLYD--ERPVPLERHLVFARNESEKWDI 422 (830)
T ss_pred eeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCee--Eeec--CCCCChhHeeeeecCchHHHHH
Confidence 998875444444443 44445689999999999654 34555443333 2222 2223333333344446778877
Q ss_pred HHHHHHHhc------cCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeccccc
Q 003924 255 LLYMIREHI------SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (786)
Q Consensus 255 Ll~lL~~~~------~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~ar 328 (786)
+..+++.-. .-.++||||++++..|.+++..|...|+.+...|++|+..+|+.+...|.++++.++|+|-+++-
T Consensus 423 i~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~A 502 (830)
T COG1202 423 IARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAA 502 (830)
T ss_pred HHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhc
Confidence 777776432 22569999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceeE---ecCCC-CCHhHHHHHhhccccCCC--ccEEEEEEecc
Q 003924 329 GIDIPLLDNVI---NWDFP-PKPKIFVHRVGRAARAGR--TGTAFSFVTSE 373 (786)
Q Consensus 329 GlDIp~v~~VI---~~d~P-~s~~~~vQRvGR~gR~G~--~G~ai~lv~~~ 373 (786)
|+|+|.-.+|+ -++.- -++..|.|+.||+||.+- .|.+|+++.|.
T Consensus 503 GVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 503 GVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred CCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 99999744333 12222 388999999999999864 69999999886
No 73
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=7e-33 Score=327.79 Aligned_cols=342 Identities=24% Similarity=0.275 Sum_probs=259.5
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHH-cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHH
Q 003924 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (786)
Q Consensus 28 lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il-~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa 106 (786)
+.+++.+..-+...|+.++.|.|+.++...+ .++|+|+++|||||||+++++.++..+..+ +.++|||||+++||
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~----~~k~vYivPlkALa 89 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG----GGKVVYIVPLKALA 89 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc----CCcEEEEeChHHHH
Confidence 4488889999999999899999998886655 559999999999999999999999998874 67899999999999
Q ss_pred HHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChH
Q 003924 107 LQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA 186 (786)
Q Consensus 107 ~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~ 186 (786)
.+.++.++.+ ...|+++...+|....... ...+++|||+||+.+-.++.+. ...+..+++||+||+|.+.+....
T Consensus 90 ~Ek~~~~~~~-~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~-~~~~~~V~lvViDEiH~l~d~~RG 164 (766)
T COG1204 90 EEKYEEFSRL-EELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKR-PSWIEEVDLVVIDEIHLLGDRTRG 164 (766)
T ss_pred HHHHHHhhhH-HhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcC-cchhhcccEEEEeeeeecCCcccC
Confidence 9999988833 4568999999998775543 2357999999999998777764 335789999999999999887555
Q ss_pred HHHHHHHhhcc---cCCceEEEeccCcHHHHHHHHhcCCCCc--ceeeccccccCCCceeeeeecc------hHHHHHHH
Q 003924 187 EQLHKILGQLS---ENRQTLLFSATLPSALAEFAKAGLRDPH--LVRLDVDTKISPDLKLAFFTLR------QEEKHAAL 255 (786)
Q Consensus 187 ~~l~~Il~~l~---~~~q~ll~SATl~~~l~~~~~~~l~~p~--~i~~~~~~~~~~~l~~~~~~v~------~~~k~~~L 255 (786)
..+..|+..+. ...|++.+|||+|+. .+++...-.++. .++...-....+ ....++... +......+
T Consensus 165 ~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~-~~~~~~~~~~~~k~~~~~~~~~~ 242 (766)
T COG1204 165 PVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVP-YVGAFLGADGKKKTWPLLIDNLA 242 (766)
T ss_pred ceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCc-cceEEEEecCccccccccchHHH
Confidence 66666665554 347999999999874 333332222222 111111111111 112222222 12244566
Q ss_pred HHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc-------------------------------------CCCceeecC
Q 003924 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-------------------------------------GLEPSVCYG 298 (786)
Q Consensus 256 l~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~-------------------------------------g~~v~~lhg 298 (786)
+.++.+.+..++++||||+++..+...+..|... ...+.++|.
T Consensus 243 ~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhA 322 (766)
T COG1204 243 LELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHA 322 (766)
T ss_pred HHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccccc
Confidence 7777777888999999999999999998888730 123678899
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeE----ecC-----CCCCHhHHHHHhhccccCCC--ccEEE
Q 003924 299 DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI----NWD-----FPPKPKIFVHRVGRAARAGR--TGTAF 367 (786)
Q Consensus 299 ~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI----~~d-----~P~s~~~~vQRvGR~gR~G~--~G~ai 367 (786)
+|+...|..+.+.|+.|.++||+||+++|.|+|+|.-.+|| .|+ .+.+.-+++|++||+||.|- .|.++
T Consensus 323 GL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~ 402 (766)
T COG1204 323 GLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAI 402 (766)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEE
Confidence 99999999999999999999999999999999999766665 466 56778899999999999885 47777
Q ss_pred EEEec-ccHHHHHH
Q 003924 368 SFVTS-EDMAYLLD 380 (786)
Q Consensus 368 ~lv~~-~e~~~l~~ 380 (786)
++.+. .+..++.+
T Consensus 403 i~~~~~~~~~~~~~ 416 (766)
T COG1204 403 ILATSHDELEYLAE 416 (766)
T ss_pred EEecCccchhHHHH
Confidence 77744 44444443
No 74
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.4e-32 Score=326.10 Aligned_cols=353 Identities=27% Similarity=0.340 Sum_probs=270.5
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHH
Q 003924 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (786)
Q Consensus 30 Ls~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~ 109 (786)
....+..++...|...|+++|.+|+..+.+|++||+..+||||||++|++|+++.+... ...++|||.||++||..+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~---~~a~AL~lYPtnALa~DQ 131 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRD---PSARALLLYPTNALANDQ 131 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhC---cCccEEEEechhhhHhhH
Confidence 34456888889999999999999999999999999999999999999999999999875 344899999999999999
Q ss_pred HHHHHHHccCCC--CeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccC---CCCCceeeEEeCCccccccC-
Q 003924 110 LKFTKELGRYTD--LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED---MSLKSVEYVVFDEADCLFGM- 183 (786)
Q Consensus 110 ~~~l~~l~~~~~--l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~---l~l~~l~~vV~DEah~l~~~- 183 (786)
.+.+.++....+ +.+..++|.+...+....+.+.|+||+|||.+|..++..... +.+.+++|||+||+|..-..
T Consensus 132 ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~ 211 (851)
T COG1205 132 AERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQ 211 (851)
T ss_pred HHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccc
Confidence 999999887776 677777776665555567788999999999999875554222 34778999999999976431
Q ss_pred --C---hHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeec-----c---hHH
Q 003924 184 --G---FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL-----R---QEE 250 (786)
Q Consensus 184 --g---f~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v-----~---~~~ 250 (786)
. ....|..++...+.+.|+|+.|||+.+. .+++..+++.+....++.+.............- . ...
T Consensus 212 GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s 290 (851)
T COG1205 212 GSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRS 290 (851)
T ss_pred hhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhcccc
Confidence 1 2334444455556789999999999665 456666665544333333322222222211111 0 124
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEcchhhHHHHH----HHHHHcC----CCceeecCCCCHHHHHHHHHHHhcCCcEEEEE
Q 003924 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLN----VLFREEG----LEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322 (786)
Q Consensus 251 k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~----~~L~~~g----~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVa 322 (786)
....+..++...+..+-++|+|+.++..++.++ ..+...+ ..+...++++...+|..+...|+.|+..++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~s 370 (851)
T COG1205 291 ALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIA 370 (851)
T ss_pred hHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEec
Confidence 445555555556667889999999999999997 4444444 56788899999999999999999999999999
Q ss_pred ecccccccCCCCcceeEecCCCC-CHhHHHHHhhccccCCCccEEEEEEecc--cHHHHHHHHHHhc
Q 003924 323 TDVAARGIDIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVTSE--DMAYLLDLHLFLS 386 (786)
Q Consensus 323 Tdv~arGlDIp~v~~VI~~d~P~-s~~~~vQRvGR~gR~G~~G~ai~lv~~~--e~~~l~~l~~~l~ 386 (786)
|.++.-|+||-.++.||.+++|. +...|.||+||+||.++.+..+.++..+ +..|+..-+.++.
T Consensus 371 t~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~ 437 (851)
T COG1205 371 TNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE 437 (851)
T ss_pred chhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh
Confidence 99999999999999999999999 8999999999999999777777766643 3344444444444
No 75
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5e-32 Score=310.49 Aligned_cols=371 Identities=19% Similarity=0.219 Sum_probs=246.9
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHH----H
Q 003924 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE----E 139 (786)
Q Consensus 64 vl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~----~ 139 (786)
++.|+||||||++|+..+.+.+. .|.++|||+|+++|+.|+++.+++.. +..+..++++.+..+... .
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~-----~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~~~~ 72 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA-----LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAWRKV 72 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHHHHH
Confidence 47899999999999876655543 26689999999999999999887642 467888888876654332 2
Q ss_pred HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccC-----ChHHHHHHHHhhcccCCceEEEeccCcHHHH
Q 003924 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-----GFAEQLHKILGQLSENRQTLLFSATLPSALA 214 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~-----gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~ 214 (786)
..+.++|||+|++.++ ..+.++++|||||+|...-. .|...-..++.....+.++|++|||++.+.
T Consensus 73 ~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles- 143 (505)
T TIGR00595 73 KNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLES- 143 (505)
T ss_pred HcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHH-
Confidence 3456899999998773 45788999999999987632 122222233333345889999999976544
Q ss_pred HHHHhcCCCCcceeeccccccCCCceeeeeecchHH----HHHHHHHHHHHhccCCCcEEEEEcchhh------------
Q 003924 215 EFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE----KHAALLYMIREHISSDQQTLIFVSTKHH------------ 278 (786)
Q Consensus 215 ~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~----k~~~Ll~lL~~~~~~~~k~IVF~~t~~~------------ 278 (786)
+....-+...++.+.............++...... -...|+..+.+.+..++++|||+|++..
T Consensus 144 -~~~~~~g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 144 -YHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYI 222 (505)
T ss_pred -HHHHhcCCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCc
Confidence 33332223333333322211122222233332221 2346788888888889999999776432
Q ss_pred ------------------------------------------------HHHHHHHHHHc--CCCceeecCCCCHHHH--H
Q 003924 279 ------------------------------------------------VEFLNVLFREE--GLEPSVCYGDMDQDAR--K 306 (786)
Q Consensus 279 ------------------------------------------------ae~l~~~L~~~--g~~v~~lhg~l~q~~R--~ 306 (786)
++.+.+.|... +..+..+|+++.+..+ .
T Consensus 223 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~ 302 (505)
T TIGR00595 223 LCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHE 302 (505)
T ss_pred cCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHH
Confidence 46777888776 6788999999887755 8
Q ss_pred HHHHHHhcCCcEEEEEecccccccCCCCcceeE--ecCC----CC------CHhHHHHHhhccccCCCccEEEEEE-ecc
Q 003924 307 IHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI--NWDF----PP------KPKIFVHRVGRAARAGRTGTAFSFV-TSE 373 (786)
Q Consensus 307 ~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI--~~d~----P~------s~~~~vQRvGR~gR~G~~G~ai~lv-~~~ 373 (786)
.+++.|++|+.+|||+|+++++|+|+|++++|+ ++|. |. ....|+|++||+||.+..|.+++.. .++
T Consensus 303 ~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 303 ALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 899999999999999999999999999999885 5554 21 2467899999999999999998544 333
Q ss_pred c----------HHHHHHHHHHhcCCCCCCCC------------HHHHHhhhhhHHHHHHHHHhcCCccccccchhHHHHH
Q 003924 374 D----------MAYLLDLHLFLSKPIRAAPS------------EEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLV 431 (786)
Q Consensus 374 e----------~~~l~~l~~~l~~~~~~~p~------------~e~~~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~ 431 (786)
+ +..+..-++..++.+..+|. ++.+...+..+...+.+.+..+..++|+.|.++....
T Consensus 383 ~~~~~~~~~~d~~~f~~~el~~R~~~~~PPf~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lgP~~~~~~k~~ 462 (505)
T TIGR00595 383 HPAIQAALTGDYEAFYEQELAQRRALNYPPFTRLIRLIFRGKNEEKAQQTAQAAHELLKQNLDEKLEVLGPSPAPIAKIA 462 (505)
T ss_pred CHHHHHHHhCCHHHHHHHHHHHHHHcCCCchhcEEEEEEecCCHHHHHHHHHHHHHHHHhhccCCcEEeCCccccchhhc
Confidence 3 22333334444455556653 2233333333334443333334568999999998876
Q ss_pred HHHHHHHHHhhhhhHHHHHHH
Q 003924 432 SDRVREIIDSSADLNSLQRTC 452 (786)
Q Consensus 432 ~~~~~~l~~~~~~l~~l~~~~ 452 (786)
..+...++-.......+++..
T Consensus 463 ~~~r~~~l~k~~~~~~~~~~l 483 (505)
T TIGR00595 463 GRYRYQILLKSKSFLVLQKLV 483 (505)
T ss_pred CeeEEEEEEEcCCHHHHHHHH
Confidence 666555554444434444433
No 76
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=7e-32 Score=314.21 Aligned_cols=318 Identities=17% Similarity=0.232 Sum_probs=223.6
Q ss_pred CChHHHHHHHHHHHc-C--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCC
Q 003924 45 VPTPIQRKTMPLILS-G--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (786)
Q Consensus 45 ~ptpiQ~~aip~il~-g--~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~ 121 (786)
.|+|+|.+++..++. | +..++++|||+|||++.+..+. .+ +.++|||||+.+|+.||.+.+..+.....
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l-------~k~tLILvps~~Lv~QW~~ef~~~~~l~~ 326 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV-------KKSCLVLCTSAVSVEQWKQQFKMWSTIDD 326 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh-------CCCEEEEeCcHHHHHHHHHHHHHhcCCCC
Confidence 589999999998884 3 3689999999999998775443 33 23599999999999999999998865555
Q ss_pred CeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhh-------ccCCCCCceeeEEeCCccccccCChHHHHHHHHh
Q 003924 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-------VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (786)
Q Consensus 122 l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~-------~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~ 194 (786)
..+..++|+.... .....+|+|+|+..+.+...+ +..+.-..+++||+||||++.. ..+..++.
T Consensus 327 ~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~ 397 (732)
T TIGR00603 327 SQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLT 397 (732)
T ss_pred ceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHH
Confidence 6666666653221 123478999999977532211 1123345688999999999853 44555666
Q ss_pred hcccCCceEEEeccCcHHHH--HHHHhcCCCCcceeeccccccC----CCcee--ee---------------------ee
Q 003924 195 QLSENRQTLLFSATLPSALA--EFAKAGLRDPHLVRLDVDTKIS----PDLKL--AF---------------------FT 245 (786)
Q Consensus 195 ~l~~~~q~ll~SATl~~~l~--~~~~~~l~~p~~i~~~~~~~~~----~~l~~--~~---------------------~~ 245 (786)
.+. ....|++||||...-. ..+. ++-.|.++..+...... ..... .. ..
T Consensus 398 ~l~-a~~RLGLTATP~ReD~~~~~L~-~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~ 475 (732)
T TIGR00603 398 IVQ-AHCKLGLTATLVREDDKITDLN-FLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLY 475 (732)
T ss_pred hcC-cCcEEEEeecCcccCCchhhhh-hhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHh
Confidence 654 4567999999853211 1111 11223333322111100 00000 00 01
Q ss_pred cchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcC-CcEEEEEec
Q 003924 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR-KTMFLIVTD 324 (786)
Q Consensus 246 v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g-~~~ILVaTd 324 (786)
.....|...+..++..+-..+.++||||.+..+++.++..| .+..+||++++.+|..+++.|+.| .+++||+|+
T Consensus 476 ~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L-----~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~Sk 550 (732)
T TIGR00603 476 VMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL-----GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSK 550 (732)
T ss_pred hhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc-----CCceEECCCCHHHHHHHHHHHHhCCCccEEEEec
Confidence 11234555665666554346789999999999999988877 256799999999999999999975 789999999
Q ss_pred ccccccCCCCcceeEecCCC-CCHhHHHHHhhccccCCCccEE-------EEEEeccc--HHHHHHHHHHhc
Q 003924 325 VAARGIDIPLLDNVINWDFP-PKPKIFVHRVGRAARAGRTGTA-------FSFVTSED--MAYLLDLHLFLS 386 (786)
Q Consensus 325 v~arGlDIp~v~~VI~~d~P-~s~~~~vQRvGR~gR~G~~G~a-------i~lv~~~e--~~~l~~l~~~l~ 386 (786)
++.+|||+|.+++||+++.| .+...|+||+||++|.+..|.+ |+|++.+. +.|-..-+.||-
T Consensus 551 VgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl~ 622 (732)
T TIGR00603 551 VGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEMYYSTKRQRFLV 622 (732)
T ss_pred ccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHHHHHHHHHHHHH
Confidence 99999999999999999988 5999999999999999876665 89999864 445445555553
No 77
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.98 E-value=4.6e-31 Score=301.63 Aligned_cols=344 Identities=22% Similarity=0.283 Sum_probs=242.9
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHH
Q 003924 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (786)
Q Consensus 30 Ls~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~ 109 (786)
+.++......--..-.+++||.+.+..+| |+++++++|||+|||+++...|+.++... +..++|+++||+-|+.|.
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~---p~~KiVF~aP~~pLv~QQ 122 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR---PKGKVVFLAPTRPLVNQQ 122 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC---CcceEEEeeCCchHHHHH
Confidence 44444433333344589999999998888 99999999999999999999999988765 347899999999999998
Q ss_pred HHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCC-hHHH
Q 003924 110 LKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQ 188 (786)
Q Consensus 110 ~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~g-f~~~ 188 (786)
...+..++.. ..+....||.....-+..+-..++|+|+||..+.+.|.+.....|+.+.++||||||+..... |..-
T Consensus 123 ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~V 200 (746)
T KOG0354|consen 123 IACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNI 200 (746)
T ss_pred HHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHH
Confidence 8777766644 556666676555555555667899999999999888877433447899999999999987654 4444
Q ss_pred HHHHHhhcccCCceEEEeccCcHHHHHHHHhcC---------------------CCCcceeecc----------------
Q 003924 189 LHKILGQLSENRQTLLFSATLPSALAEFAKAGL---------------------RDPHLVRLDV---------------- 231 (786)
Q Consensus 189 l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l---------------------~~p~~i~~~~---------------- 231 (786)
+...+..-....|+|++||||............ ++...+.++.
T Consensus 201 mr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~ 280 (746)
T KOG0354|consen 201 MREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIE 280 (746)
T ss_pred HHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHH
Confidence 445555544455999999999755443322110 0000000000
Q ss_pred ----------------ccccC------------CCc--eee--eee---------------cc-----------------
Q 003924 232 ----------------DTKIS------------PDL--KLA--FFT---------------LR----------------- 247 (786)
Q Consensus 232 ----------------~~~~~------------~~l--~~~--~~~---------------v~----------------- 247 (786)
..... ++. .+. |.. ++
T Consensus 281 p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~ 360 (746)
T KOG0354|consen 281 PLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVAL 360 (746)
T ss_pred HHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccch
Confidence 00000 000 000 000 00
Q ss_pred --------------------------------hHHHHHHHHHHHHHhc--cCCCcEEEEEcchhhHHHHHHHHHH---cC
Q 003924 248 --------------------------------QEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFRE---EG 290 (786)
Q Consensus 248 --------------------------------~~~k~~~Ll~lL~~~~--~~~~k~IVF~~t~~~ae~l~~~L~~---~g 290 (786)
...|+..|..+|.+.. ....++||||.++..|+.|...|.. .+
T Consensus 361 ~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ 440 (746)
T KOG0354|consen 361 KKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELG 440 (746)
T ss_pred hHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcc
Confidence 0012233333333222 2456899999999999999999873 23
Q ss_pred CCceeecC--------CCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCC
Q 003924 291 LEPSVCYG--------DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362 (786)
Q Consensus 291 ~~v~~lhg--------~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~ 362 (786)
+....+-| +|+|.++.++++.|++|+++|||||+++++||||+.|++||-||.-.++...+||.|| ||+ +
T Consensus 441 ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ 518 (746)
T KOG0354|consen 441 IKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-R 518 (746)
T ss_pred cccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-c
Confidence 44444333 7999999999999999999999999999999999999999999999999999999999 998 6
Q ss_pred ccEEEEEEecccHHHHHHH
Q 003924 363 TGTAFSFVTSEDMAYLLDL 381 (786)
Q Consensus 363 ~G~ai~lv~~~e~~~l~~l 381 (786)
.|.++++++..+...+...
T Consensus 519 ns~~vll~t~~~~~~~E~~ 537 (746)
T KOG0354|consen 519 NSKCVLLTTGSEVIEFERN 537 (746)
T ss_pred CCeEEEEEcchhHHHHHHH
Confidence 7999999996655444443
No 78
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=5.8e-30 Score=312.33 Aligned_cols=315 Identities=19% Similarity=0.246 Sum_probs=223.5
Q ss_pred CCCCCChHHHH---HHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-HH
Q 003924 41 KGYKVPTPIQR---KTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-EL 116 (786)
Q Consensus 41 ~g~~~ptpiQ~---~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~-~l 116 (786)
..|...-|+.. +.+..|..++.+|++|+||||||. .+|.+..-... .....+++.-|.|--|..++..+. ++
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~--~~~~~I~~tQPRRlAA~svA~RvA~el 135 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR--GSHGLIGHTQPRRLAARTVAQRIAEEL 135 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC--CCCceEecCCccHHHHHHHHHHHHHHh
Confidence 45665556655 455555566778999999999999 55765432211 112345666799888888776443 45
Q ss_pred ccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcc-ccccCChHHH-HHHHHh
Q 003924 117 GRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD-CLFGMGFAEQ-LHKILG 194 (786)
Q Consensus 117 ~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah-~l~~~gf~~~-l~~Il~ 194 (786)
+...|-.|+.-+...+ + ...++.|+|+|+|.|+..+.. +..+..+++||||||| ++++.+|... +..++.
T Consensus 136 g~~lG~~VGY~vR~~~---~---~s~~T~I~~~TdGiLLr~l~~--d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~ 207 (1283)
T TIGR01967 136 GTPLGEKVGYKVRFHD---Q---VSSNTLVKLMTDGILLAETQQ--DRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP 207 (1283)
T ss_pred CCCcceEEeeEEcCCc---c---cCCCceeeeccccHHHHHhhh--CcccccCcEEEEcCcchhhccchhHHHHHHHHHh
Confidence 5444444444333222 2 245688999999999999876 4558999999999999 6888888765 555554
Q ss_pred hcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecch------HHHHHHHHHHHHHhcc-CCC
Q 003924 195 QLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ------EEKHAALLYMIREHIS-SDQ 267 (786)
Q Consensus 195 ~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~------~~k~~~Ll~lL~~~~~-~~~ 267 (786)
.. +..++|+||||++. ..|.+.+...| ++.+.... ..+...|..+.. ......++..+..... ..+
T Consensus 208 ~r-pdLKlIlmSATld~--~~fa~~F~~ap-vI~V~Gr~---~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~G 280 (1283)
T TIGR01967 208 RR-PDLKIIITSATIDP--ERFSRHFNNAP-IIEVSGRT---YPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPG 280 (1283)
T ss_pred hC-CCCeEEEEeCCcCH--HHHHHHhcCCC-EEEECCCc---ccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCC
Confidence 43 47899999999974 35665544444 44444322 123444443321 1344455555544332 457
Q ss_pred cEEEEEcchhhHHHHHHHHHHcCC---CceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCC
Q 003924 268 QTLIFVSTKHHVEFLNVLFREEGL---EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP 344 (786)
Q Consensus 268 k~IVF~~t~~~ae~l~~~L~~~g~---~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P 344 (786)
.+|||+++..+++.++..|...+. .+..+||+|++.+|..++..+ +..+|||||+++++|||||++++||+++++
T Consensus 281 dILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~ 358 (1283)
T TIGR01967 281 DILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTA 358 (1283)
T ss_pred CEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCc
Confidence 899999999999999999987654 478899999999999886543 346899999999999999999999999853
Q ss_pred ------------------CCHhHHHHHhhccccCCCccEEEEEEecccHHH
Q 003924 345 ------------------PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (786)
Q Consensus 345 ------------------~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~ 377 (786)
.|...|.||+||+||.| +|.||.|++..+...
T Consensus 359 r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 359 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred cccccccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 36679999999999997 899999999876543
No 79
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=8.6e-30 Score=259.52 Aligned_cols=202 Identities=46% Similarity=0.823 Sum_probs=186.4
Q ss_pred ccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHH
Q 003924 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (786)
Q Consensus 25 f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptre 104 (786)
|+++++++.+++.+..+||..|+++|.++++.++.|+++++++|||+|||++|++|+++.+.......+.++||++|+++
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~ 80 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRE 80 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHH
Confidence 78999999999999999999999999999999999999999999999999999999999988753335789999999999
Q ss_pred HHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCC
Q 003924 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184 (786)
Q Consensus 105 La~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~g 184 (786)
|+.|+...+..+....++.+..++|+.........+..+++|+|+||+.|+.++.. ..+.+.+++++|+||+|.+.+.+
T Consensus 81 L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~l~~lIvDE~h~~~~~~ 159 (203)
T cd00268 81 LALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLER-GKLDLSKVKYLVLDEADRMLDMG 159 (203)
T ss_pred HHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc-CCCChhhCCEEEEeChHHhhccC
Confidence 99999999999988888999999999988777777777899999999999998876 35778999999999999999999
Q ss_pred hHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcce
Q 003924 185 FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLV 227 (786)
Q Consensus 185 f~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i 227 (786)
+...+..++..++..+|++++|||+++.+..++..++.+|.++
T Consensus 160 ~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 160 FEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 9999999999999999999999999999999999999988765
No 80
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1.2e-28 Score=288.99 Aligned_cols=322 Identities=22% Similarity=0.273 Sum_probs=234.9
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.|. .|.++|--.--.+.. .-|+.++||+|||++|++|++..+.. |..++||+||++||.|.++++..+..++
T Consensus 79 lg~-~~ydvQliGg~~Lh~--G~Iaem~TGeGKTL~a~Lpa~~~al~-----G~~V~VvTpn~yLA~qd~e~m~~l~~~l 150 (896)
T PRK13104 79 LGL-RHFDVQLIGGMVLHE--GNIAEMRTGEGKTLVATLPAYLNAIS-----GRGVHIVTVNDYLAKRDSQWMKPIYEFL 150 (896)
T ss_pred cCC-CcchHHHhhhhhhcc--CccccccCCCCchHHHHHHHHHHHhc-----CCCEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 454 677777665544444 46999999999999999999977653 4569999999999999999999999999
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-HHHHhhccCCCC-----CceeeEEeCCccccccC-----------
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMSL-----KSVEYVVFDEADCLFGM----------- 183 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~~~~l~l-----~~l~~vV~DEah~l~~~----------- 183 (786)
++++.+++||.+.......+ .++|+|+||++| ++++...-.+++ ..+.++|+||||.++-.
T Consensus 151 GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~ 228 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGA 228 (896)
T ss_pred CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCC
Confidence 99999999998877765554 689999999999 999887323444 58899999999988610
Q ss_pred -----ChHHHHHHHHhhccc--------------CCceEEEeccCcHHHHHH----------------------------
Q 003924 184 -----GFAEQLHKILGQLSE--------------NRQTLLFSATLPSALAEF---------------------------- 216 (786)
Q Consensus 184 -----gf~~~l~~Il~~l~~--------------~~q~ll~SATl~~~l~~~---------------------------- 216 (786)
.....+..++..+.. ..+.+.+|-.=-..+..+
T Consensus 229 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~a 308 (896)
T PRK13104 229 AEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAA 308 (896)
T ss_pred CccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHH
Confidence 122233333333321 112232222100001110
Q ss_pred HHh---cCCCCcce-------eeccc-----------------------------c------------------------
Q 003924 217 AKA---GLRDPHLV-------RLDVD-----------------------------T------------------------ 233 (786)
Q Consensus 217 ~~~---~l~~p~~i-------~~~~~-----------------------------~------------------------ 233 (786)
+++ +..+-.+| .+|.- .
T Consensus 309 L~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGT 388 (896)
T PRK13104 309 LKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGT 388 (896)
T ss_pred HHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCC
Confidence 000 00111111 01000 0
Q ss_pred -----------------ccCCC---c---eeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcC
Q 003924 234 -----------------KISPD---L---KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG 290 (786)
Q Consensus 234 -----------------~~~~~---l---~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g 290 (786)
.++++ . ....+.....+|..+++..+.+....+.|+||||+|+..++.++.+|...|
T Consensus 389 a~te~~Ef~~iY~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~g 468 (896)
T PRK13104 389 ADTEAYEFQQIYNLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKEN 468 (896)
T ss_pred ChhHHHHHHHHhCCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcC
Confidence 00000 0 011233445678889999888877889999999999999999999999999
Q ss_pred CCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCc-----------------------------------
Q 003924 291 LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL----------------------------------- 335 (786)
Q Consensus 291 ~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v----------------------------------- 335 (786)
+++..+|+.+.+.++..+...|+.|. |+|||++|+||+||.--
T Consensus 469 i~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 546 (896)
T PRK13104 469 IKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIA 546 (896)
T ss_pred CCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHH
Confidence 99999999999999999999999995 99999999999999732
Q ss_pred ---ceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEeccc
Q 003924 336 ---DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (786)
Q Consensus 336 ---~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e 374 (786)
-+||-...+.|...=.|-.||+||.|.+|.+-.|++-+|
T Consensus 547 ~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 547 AGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred cCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 268888888888889999999999999999999999765
No 81
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=3.2e-28 Score=284.60 Aligned_cols=148 Identities=20% Similarity=0.364 Sum_probs=131.8
Q ss_pred cCCCCCHHHHHHHH-----HCCCCCC---hHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEE
Q 003924 26 ESLNLSPNVFRAIK-----RKGYKVP---TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL 97 (786)
Q Consensus 26 ~~lgLs~~ll~~l~-----~~g~~~p---tpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~L 97 (786)
+++++..++.+.+. .+||..| ||+|.++||.++.++++++.++||+|||++|++|++..+.. +..++
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~-----g~~v~ 139 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALT-----GKPVH 139 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhh-----cCCeE
Confidence 45679999999988 6899999 99999999999999999999999999999999999988764 22489
Q ss_pred EEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-HHHHhhccCCCCC-------ce
Q 003924 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMSLK-------SV 169 (786)
Q Consensus 98 IL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~~~~l~l~-------~l 169 (786)
||+||++||.|+++++..+.+++++++.+++||.+...+...+ .|+|+||||++| ++++.. ..+.++ .+
T Consensus 140 IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd-~~~~~~~~~~vqr~~ 216 (970)
T PRK12899 140 LVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRD-NSIATRKEEQVGRGF 216 (970)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhC-CCCCcCHHHhhcccc
Confidence 9999999999999999999999999999999999998887665 599999999999 999987 335555 44
Q ss_pred eeEEeCCccccc
Q 003924 170 EYVVFDEADCLF 181 (786)
Q Consensus 170 ~~vV~DEah~l~ 181 (786)
.++||||||.|+
T Consensus 217 ~~~IIDEADsmL 228 (970)
T PRK12899 217 YFAIIDEVDSIL 228 (970)
T ss_pred cEEEEechhhhh
Confidence 799999999987
No 82
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=1.3e-28 Score=295.91 Aligned_cols=345 Identities=19% Similarity=0.225 Sum_probs=223.1
Q ss_pred CChHHHHHHHHHHHcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCC
Q 003924 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g--~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l 122 (786)
.|.|+|..++..++.. ..+++...+|.|||..+.+.+.+.+... ...++|||||+ .|..||..++... +++
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g---~~~rvLIVvP~-sL~~QW~~El~~k---F~l 224 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG---RAERVLILVPE-TLQHQWLVEMLRR---FNL 224 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC---CCCcEEEEcCH-HHHHHHHHHHHHH---hCC
Confidence 6999999998777654 4799999999999988776665554442 23479999998 7999988877542 235
Q ss_pred eEEEEEcCCChhHHHH---HHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccC--ChHHHHHHHHhhc-
Q 003924 123 RISLLVGGDSMESQFE---ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM--GFAEQLHKILGQL- 196 (786)
Q Consensus 123 ~v~~l~gg~~~~~~~~---~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~--gf~~~l~~Il~~l- 196 (786)
...++.+ ........ ......+++|+|++.+...-.....+.-..+++|||||||++-.. .-.... ..+..+
T Consensus 225 ~~~i~~~-~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y-~~v~~La 302 (956)
T PRK04914 225 RFSLFDE-ERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY-QVVEQLA 302 (956)
T ss_pred CeEEEcC-cchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH-HHHHHHh
Confidence 4444433 22211110 011246799999998764221111233346889999999998631 111122 233333
Q ss_pred ccCCceEEEeccCcH----H---------------HHHHHH-------------hcCCC-C-------------------
Q 003924 197 SENRQTLLFSATLPS----A---------------LAEFAK-------------AGLRD-P------------------- 224 (786)
Q Consensus 197 ~~~~q~ll~SATl~~----~---------------l~~~~~-------------~~l~~-p------------------- 224 (786)
.....++++||||-. + ...|.. ..+.. +
T Consensus 303 ~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~ 382 (956)
T PRK04914 303 EVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDIE 382 (956)
T ss_pred hccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccchh
Confidence 235678999999831 0 001110 00000 0
Q ss_pred --------------------------------cceeecccc--ccCC-Cceeeeeec-----------------------
Q 003924 225 --------------------------------HLVRLDVDT--KISP-DLKLAFFTL----------------------- 246 (786)
Q Consensus 225 --------------------------------~~i~~~~~~--~~~~-~l~~~~~~v----------------------- 246 (786)
.+++-.... ..+. .+....+.+
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~pe 462 (956)
T PRK04914 383 PLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYPE 462 (956)
T ss_pred HHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCHH
Confidence 000000000 0000 000000000
Q ss_pred -------------chHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHH-HHcCCCceeecCCCCHHHHHHHHHHH
Q 003924 247 -------------RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLF-REEGLEPSVCYGDMDQDARKIHVSRF 312 (786)
Q Consensus 247 -------------~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L-~~~g~~v~~lhg~l~q~~R~~~l~~F 312 (786)
..+.|...|..+|... .+.++||||+++..+..+...| ...|+.+..+||+|++.+|..+++.|
T Consensus 463 ~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~--~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 463 QIYQEFEDNATWWNFDPRVEWLIDFLKSH--RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHhhhhhccccCHHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 1122445566666554 3679999999999999999999 46799999999999999999999999
Q ss_pred hcC--CcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCC-
Q 003924 313 RAR--KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPI- 389 (786)
Q Consensus 313 ~~g--~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~- 389 (786)
+++ .+.|||||+++++|+|++.+++|||||+|++|..|.||+||++|.|+.+.+.+++...+-..-..+...+...+
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ 620 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLN 620 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcC
Confidence 984 59999999999999999999999999999999999999999999999998877776544323333333444433
Q ss_pred ---CCCCCHHHHHh
Q 003924 390 ---RAAPSEEEVLL 400 (786)
Q Consensus 390 ---~~~p~~e~~~~ 400 (786)
...|+...+..
T Consensus 621 ife~~~~~~~~v~~ 634 (956)
T PRK04914 621 AFEHTCPTGRALYD 634 (956)
T ss_pred ceeccCCCHHHHHH
Confidence 34455555443
No 83
>PRK09694 helicase Cas3; Provisional
Probab=99.97 E-value=7e-29 Score=296.61 Aligned_cols=312 Identities=18% Similarity=0.205 Sum_probs=207.6
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccC--CC
Q 003924 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY--TD 121 (786)
Q Consensus 44 ~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~--~~ 121 (786)
..|+|+|+.+........-+++.||||+|||.+++.++...+... ...+++|.+||++++.|+++.+.++... ..
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~---~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQG---LADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC---CCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 389999998865444456789999999999999887665433321 2357999999999999999988764322 23
Q ss_pred CeEEEEEcCCChhHHHHH--------------------Hc----C---CCCEEEECcHHHHHHHhhccCCCCCc----ee
Q 003924 122 LRISLLVGGDSMESQFEE--------------------LA----Q---NPDIIIATPGRLMHHLSEVEDMSLKS----VE 170 (786)
Q Consensus 122 l~v~~l~gg~~~~~~~~~--------------------l~----~---~~dIiV~Tpgrll~~l~~~~~l~l~~----l~ 170 (786)
..+.+++|.......+.. +. . -.+|+|||+..++.-........+.. -+
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~s 441 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRS 441 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccC
Confidence 567777776543221111 11 1 26899999999875443322222222 24
Q ss_pred eEEeCCccccccCChHHHHHHHHhhcc-cCCceEEEeccCcHHHHHHH-HhcCCC--------Ccceeecccc-----cc
Q 003924 171 YVVFDEADCLFGMGFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFA-KAGLRD--------PHLVRLDVDT-----KI 235 (786)
Q Consensus 171 ~vV~DEah~l~~~gf~~~l~~Il~~l~-~~~q~ll~SATl~~~l~~~~-~~~l~~--------p~~i~~~~~~-----~~ 235 (786)
+|||||+|-+-. -....+..++..+. ....+|+||||+|..+...+ ..+-.. +.++...... ..
T Consensus 442 vvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~ 520 (878)
T PRK09694 442 VLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDL 520 (878)
T ss_pred eEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeec
Confidence 899999998633 23344555555442 35779999999998876543 332111 1111110000 00
Q ss_pred -------CCCceeeeeec--chHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcC---CCceeecCCCCHH
Q 003924 236 -------SPDLKLAFFTL--RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG---LEPSVCYGDMDQD 303 (786)
Q Consensus 236 -------~~~l~~~~~~v--~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g---~~v~~lhg~l~q~ 303 (786)
.......+... ........++..+.+....++++||||||+..++.++..|.+.+ ..+..+||.+.+.
T Consensus 521 ~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~ 600 (878)
T PRK09694 521 SAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLN 600 (878)
T ss_pred cccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHH
Confidence 00011111111 11111234555555545578899999999999999999999765 5789999999999
Q ss_pred HH----HHHHHHH-hcCC---cEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCC
Q 003924 304 AR----KIHVSRF-RARK---TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362 (786)
Q Consensus 304 ~R----~~~l~~F-~~g~---~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~ 362 (786)
+| ..+++.| ++|+ ..|||+|+++++||||+ +|++|....| .+.++||+||++|.++
T Consensus 601 dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 601 DRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred HHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 99 4568888 6665 47999999999999994 7999988777 5899999999999876
No 84
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=5.1e-29 Score=262.92 Aligned_cols=328 Identities=19% Similarity=0.264 Sum_probs=246.6
Q ss_pred HHHHHHH-CCCCC-ChHHHHHHHHHHHcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHH
Q 003924 34 VFRAIKR-KGYKV-PTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL 110 (786)
Q Consensus 34 ll~~l~~-~g~~~-ptpiQ~~aip~il~g-~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~ 110 (786)
+-.+|++ .|+.. -+|.|.+|+..+..+ +||.+++|||+||++||.+|.+-. .| -.||++|..+|+....
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-------~g-ITIV~SPLiALIkDQi 78 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-------GG-ITIVISPLIALIKDQI 78 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-------CC-eEEEehHHHHHHHHHH
Confidence 4455655 47664 489999999988765 799999999999999999998854 23 6899999999999888
Q ss_pred HHHHHHccCCCCeEEEEEcCCChhHHHHHH------cCCCCEEEECcHH-----HHHHHhhccCCCCCceeeEEeCCccc
Q 003924 111 KFTKELGRYTDLRISLLVGGDSMESQFEEL------AQNPDIIIATPGR-----LMHHLSEVEDMSLKSVEYVVFDEADC 179 (786)
Q Consensus 111 ~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l------~~~~dIiV~Tpgr-----ll~~l~~~~~l~l~~l~~vV~DEah~ 179 (786)
+.+..+- +.+..+.+..+..+..+.+ ..+..+++.||+. |..+|.. -.+-+-+.|+|+||||.
T Consensus 79 DHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~--L~~r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 79 DHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNG--LANRDVLRYIVVDEAHC 152 (641)
T ss_pred HHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHH--HhhhceeeeEEechhhh
Confidence 8777754 5555555554444333222 2356689999975 3333332 22345678999999999
Q ss_pred cccCC--hHHHHHHH---HhhcccCCceEEEeccCcHHHHHHH--HhcCCCCcceeeccccccCCCceeeeeecch----
Q 003924 180 LFGMG--FAEQLHKI---LGQLSENRQTLLFSATLPSALAEFA--KAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ---- 248 (786)
Q Consensus 180 l~~~g--f~~~l~~I---l~~l~~~~q~ll~SATl~~~l~~~~--~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~---- 248 (786)
+..|| |..++..+ ...+ +....+.++||-++.+.+-+ ..-|.+|+-+--... .....|+.+.-
T Consensus 153 VSQWGHDFRPDYL~LG~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~-----FR~NLFYD~~~K~~I 226 (641)
T KOG0352|consen 153 VSQWGHDFRPDYLTLGSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT-----FRDNLFYDNHMKSFI 226 (641)
T ss_pred HhhhccccCcchhhhhhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc-----hhhhhhHHHHHHHHh
Confidence 99887 55544433 3333 47789999999988877644 345667765532221 11222322221
Q ss_pred HHHHHHHHHHHHHhccC-----------CCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCc
Q 003924 249 EEKHAALLYMIREHISS-----------DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT 317 (786)
Q Consensus 249 ~~k~~~Ll~lL~~~~~~-----------~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~ 317 (786)
.+-+..|.++....+.. .+=.||||.|++.||.++..|...|+.....|.+|...+|..+.+.|.++++
T Consensus 227 ~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~ 306 (641)
T KOG0352|consen 227 TDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEI 306 (641)
T ss_pred hhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCC
Confidence 12334444444443321 1236999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHH
Q 003924 318 MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (786)
Q Consensus 318 ~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (786)
.||++|...+.|+|-|+|..||++++|.+..-|.|-.||+||.|...+|-++++.+|...+..|
T Consensus 307 PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FL 370 (641)
T KOG0352|consen 307 PVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFL 370 (641)
T ss_pred CEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999987766544
No 85
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=1e-27 Score=270.70 Aligned_cols=330 Identities=20% Similarity=0.244 Sum_probs=252.0
Q ss_pred CCccCCCCCHHHHHH-HHHCCCCCChHHHHHHHHHHHcC------CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeE
Q 003924 23 GGFESLNLSPNVFRA-IKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVR 95 (786)
Q Consensus 23 ~~f~~lgLs~~ll~~-l~~~g~~~ptpiQ~~aip~il~g------~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r 95 (786)
.+.-.+..+..++.. +..+.| .||..|+.++..|... -+=+++|..|||||+++++.|+..+.. |.+
T Consensus 240 ~~~~~~~~~~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~-----G~Q 313 (677)
T COG1200 240 RSGIPLPANGELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA-----GYQ 313 (677)
T ss_pred ccCCCCCccHHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc-----CCe
Confidence 334445555555444 467899 8999999999999864 247899999999999999999977653 889
Q ss_pred EEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHH---HHHc-CCCCEEEECcHHHHHHHhhccCCCCCceee
Q 003924 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (786)
Q Consensus 96 ~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~---~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~ 171 (786)
+..++||--||.|-++.+.++....++++..++|........ ..+. +..+|+|+|..-| + ....++++.+
T Consensus 314 ~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALi----Q--d~V~F~~LgL 387 (677)
T COG1200 314 AALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALI----Q--DKVEFHNLGL 387 (677)
T ss_pred eEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhh----h--cceeecceeE
Confidence 999999999999999999999988999999999976654433 3333 4699999996533 2 3688999999
Q ss_pred EEeCCccccccCChHHHHHHHHhhccc-CCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHH
Q 003924 172 VVFDEADCLFGMGFAEQLHKILGQLSE-NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250 (786)
Q Consensus 172 vV~DEah~l~~~gf~~~l~~Il~~l~~-~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~ 250 (786)
||+||=|| |.-.-...+..-.. ...++.|||||-+.. ++-..+.+-.+-.++.- ++.....--.+-..+
T Consensus 388 VIiDEQHR-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRT--LAlt~fgDldvS~IdEl---P~GRkpI~T~~i~~~ 457 (677)
T COG1200 388 VIIDEQHR-----FGVHQRLALREKGEQNPHVLVMTATPIPRT--LALTAFGDLDVSIIDEL---PPGRKPITTVVIPHE 457 (677)
T ss_pred EEEecccc-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHH--HHHHHhccccchhhccC---CCCCCceEEEEeccc
Confidence 99999999 44444555555555 688999999984432 33333444333333322 222111122222345
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEcchhh--------HHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHHhcCCcEEE
Q 003924 251 KHAALLYMIREHISSDQQTLIFVSTKHH--------VEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320 (786)
Q Consensus 251 k~~~Ll~lL~~~~~~~~k~IVF~~t~~~--------ae~l~~~L~~~--g~~v~~lhg~l~q~~R~~~l~~F~~g~~~IL 320 (786)
+...++..+.+.+..+.++.|.|+-.+. |+.+++.|... ++.+..+||.|+..+...++..|++|+++||
T Consensus 458 ~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~IL 537 (677)
T COG1200 458 RRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDIL 537 (677)
T ss_pred cHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEE
Confidence 6667777887777789999999997655 44566666643 5668999999999999999999999999999
Q ss_pred EEecccccccCCCCcceeEecCCC-CCHhHHHHHhhccccCCCccEEEEEEeccc
Q 003924 321 IVTDVAARGIDIPLLDNVINWDFP-PKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (786)
Q Consensus 321 VaTdv~arGlDIp~v~~VI~~d~P-~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e 374 (786)
|||.|++.|||+|+.+++|.++.- ....++-|--||+||.+..+.|++++.+..
T Consensus 538 VaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 538 VATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred EEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 999999999999999998877753 355677889999999999999999998865
No 86
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=3.3e-27 Score=276.74 Aligned_cols=319 Identities=21% Similarity=0.265 Sum_probs=240.6
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHH-HHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPML-QRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpil-e~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~ 119 (786)
.|. .|+++|--..=.+..| -|+.+.||+|||+++.+|++ ..|. |..+-|++||..||.|.++++..+..+
T Consensus 78 lg~-~~~dvQlig~l~L~~G--~Iaem~TGeGKTLva~lpa~l~aL~------G~~V~IvTpn~yLA~rd~e~~~~l~~~ 148 (830)
T PRK12904 78 LGM-RHFDVQLIGGMVLHEG--KIAEMKTGEGKTLVATLPAYLNALT------GKGVHVVTVNDYLAKRDAEWMGPLYEF 148 (830)
T ss_pred hCC-CCCccHHHhhHHhcCC--chhhhhcCCCcHHHHHHHHHHHHHc------CCCEEEEecCHHHHHHHHHHHHHHHhh
Confidence 566 7889998877666555 59999999999999999996 5543 335779999999999999999999999
Q ss_pred CCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-HHHHhhccC-----CCCCceeeEEeCCcccccc-----------
Q 003924 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVED-----MSLKSVEYVVFDEADCLFG----------- 182 (786)
Q Consensus 120 ~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~~~~-----l~l~~l~~vV~DEah~l~~----------- 182 (786)
+++++.+++|+.+..++...+ .++|+++||++| ++++...-. +.+..+.++||||||.++-
T Consensus 149 LGlsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg 226 (830)
T PRK12904 149 LGLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISG 226 (830)
T ss_pred cCCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeEC
Confidence 999999999999888776665 499999999999 888876321 2367789999999998761
Q ss_pred -----CChHHHHHHHHhhccc--------CC-------------------------------------------------
Q 003924 183 -----MGFAEQLHKILGQLSE--------NR------------------------------------------------- 200 (786)
Q Consensus 183 -----~gf~~~l~~Il~~l~~--------~~------------------------------------------------- 200 (786)
......+..+...+.. ..
T Consensus 227 ~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~d 306 (830)
T PRK12904 227 PAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVD 306 (830)
T ss_pred CCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCc
Confidence 0122222333332211 01
Q ss_pred ------------------------------------------------------------ceEEEeccCcHHHHHHHHhc
Q 003924 201 ------------------------------------------------------------QTLLFSATLPSALAEFAKAG 220 (786)
Q Consensus 201 ------------------------------------------------------------q~ll~SATl~~~l~~~~~~~ 220 (786)
.+.+||+|......+|...|
T Consensus 307 YiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 386 (830)
T PRK12904 307 YIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY 386 (830)
T ss_pred EEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh
Confidence 23344444444333333333
Q ss_pred CCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCC
Q 003924 221 LRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (786)
Q Consensus 221 l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l 300 (786)
--+ ++.++...+....-....+.....+|..++...+.+....+.++||||+|+..++.++..|...|+++..+|+.
T Consensus 387 ~l~--vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak- 463 (830)
T PRK12904 387 NLD--VVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK- 463 (830)
T ss_pred CCC--EEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc-
Confidence 211 11111111000000011233455678999999998866678999999999999999999999999999999995
Q ss_pred CHHHHHHHHHHHhcCCcEEEEEecccccccCCCCc--------------------------------------ceeEecC
Q 003924 301 DQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL--------------------------------------DNVINWD 342 (786)
Q Consensus 301 ~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v--------------------------------------~~VI~~d 342 (786)
+.+|+..+..|..+...|+|||++|+||+||+-- -+||...
T Consensus 464 -q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTe 542 (830)
T PRK12904 464 -NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE 542 (830)
T ss_pred -hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecc
Confidence 8899999999999999999999999999999853 2688888
Q ss_pred CCCCHhHHHHHhhccccCCCccEEEEEEeccc
Q 003924 343 FPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (786)
Q Consensus 343 ~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e 374 (786)
.|.|...-.|-.||+||.|.+|.+-.|++-+|
T Consensus 543 rhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 543 RHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred cCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 89999999999999999999999999999865
No 87
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=1.3e-28 Score=293.44 Aligned_cols=331 Identities=21% Similarity=0.294 Sum_probs=254.8
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003924 34 VFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (786)
Q Consensus 34 ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l 113 (786)
+.......|+...+|-|.++|..++.|+|+++..|||.||++||.+|++-. +.-+|||+|...|...+...+
T Consensus 253 ~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~--------~gitvVISPL~SLm~DQv~~L 324 (941)
T KOG0351|consen 253 ELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL--------GGVTVVISPLISLMQDQVTHL 324 (941)
T ss_pred HHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc--------CCceEEeccHHHHHHHHHHhh
Confidence 333444579999999999999999999999999999999999999998743 336899999999988755444
Q ss_pred HHHccCCCCeEEEEEcCCChhHHH---HHHc-C--CCCEEEECcHHHHHHHhhc-cCCCCCc---eeeEEeCCccccccC
Q 003924 114 KELGRYTDLRISLLVGGDSMESQF---EELA-Q--NPDIIIATPGRLMHHLSEV-EDMSLKS---VEYVVFDEADCLFGM 183 (786)
Q Consensus 114 ~~l~~~~~l~v~~l~gg~~~~~~~---~~l~-~--~~dIiV~Tpgrll~~l~~~-~~l~l~~---l~~vV~DEah~l~~~ 183 (786)
. ..++....+.++....++. ..+. + ...|+..||+.+...-.-. ....+.. +.++|+||||.+..|
T Consensus 325 ~----~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqW 400 (941)
T KOG0351|consen 325 S----KKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQW 400 (941)
T ss_pred h----hcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhh
Confidence 3 3468888888888776443 3333 3 4789999999875432211 1123444 789999999999998
Q ss_pred C--hHHHHHH---HHhhcccCCceEEEeccCcHHHHHHHHh--cCCCCcceeeccccccCCCceeeeeecchHHHHHHHH
Q 003924 184 G--FAEQLHK---ILGQLSENRQTLLFSATLPSALAEFAKA--GLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256 (786)
Q Consensus 184 g--f~~~l~~---Il~~l~~~~q~ll~SATl~~~l~~~~~~--~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll 256 (786)
| |...+.. +...++ ...+|.+|||.+..+..-+-. .+.+|.++. .....+++...+..-........++
T Consensus 401 gHdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~---~sfnR~NL~yeV~~k~~~~~~~~~~ 476 (941)
T KOG0351|consen 401 GHDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK---SSFNRPNLKYEVSPKTDKDALLDIL 476 (941)
T ss_pred cccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec---ccCCCCCceEEEEeccCccchHHHH
Confidence 7 5554444 444444 488999999998777664443 455665332 2222333332222211122233333
Q ss_pred HHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcc
Q 003924 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (786)
Q Consensus 257 ~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~ 336 (786)
..+.. ......+||||.++..|+.++..|...++.+..+|++|+..+|..+...|..++++|+|||=+.+.|||-|+|.
T Consensus 477 ~~~~~-~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR 555 (941)
T KOG0351|consen 477 EESKL-RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVR 555 (941)
T ss_pred HHhhh-cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCcee
Confidence 34433 34677899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHH
Q 003924 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (786)
Q Consensus 337 ~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (786)
.||+|.+|.+.+.|.|-+||+||.|....|++|+...|...+..+
T Consensus 556 ~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~l 600 (941)
T KOG0351|consen 556 FVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRRL 600 (941)
T ss_pred EEEECCCchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHHH
Confidence 999999999999999999999999999999999999988766554
No 88
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=275.99 Aligned_cols=335 Identities=19% Similarity=0.266 Sum_probs=240.6
Q ss_pred HCCCCCChHHHHHHHHHHHc-CCcEEEEcCCCChHHHHHHHHHHHHHhhcC-----CCCCeEEEEEcCcHHHHHHHHHHH
Q 003924 40 RKGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHV-----PQGGVRALILSPTRDLALQTLKFT 113 (786)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~-g~dvvl~a~TGSGKT~afllpile~L~~~~-----~~~g~r~LIL~PtreLa~Q~~~~l 113 (786)
-.+|..+..+|..++|.+.. +.+++++||||||||-.|++.++..+.++. ...+.+++||+|+++||..+.+.+
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 35778899999999998875 568999999999999999999999988643 235789999999999999998866
Q ss_pred HHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccC---CCCCceeeEEeCCccccccCChHHHHH
Q 003924 114 KELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED---MSLKSVEYVVFDEADCLFGMGFAEQLH 190 (786)
Q Consensus 114 ~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~---l~l~~l~~vV~DEah~l~~~gf~~~l~ 190 (786)
..-....|+.|..++|........ ...++|||+||+.+ +.+.+... -.++.+.+||+||+|.|-+. ..+.+.
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKw-DvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlE 259 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKW-DVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLE 259 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHH---HHhcCEEEecccce-eeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHH
Confidence 655556789999999977654433 23699999999987 33333111 23678899999999988764 345555
Q ss_pred HHHhhc-------ccCCceEEEeccCcHHHHHHHHhcCCCC--cceeeccccccCCCceeeeeecchH---HH----HHH
Q 003924 191 KILGQL-------SENRQTLLFSATLPSALAEFAKAGLRDP--HLVRLDVDTKISPDLKLAFFTLRQE---EK----HAA 254 (786)
Q Consensus 191 ~Il~~l-------~~~~q~ll~SATl~~~l~~~~~~~l~~p--~~i~~~~~~~~~~~l~~~~~~v~~~---~k----~~~ 254 (786)
.|+.++ ....+++++|||+|+-. +++.-.--+| .+..++..... -.+.+.++.++.. .. ...
T Consensus 260 tiVaRtlr~vessqs~IRivgLSATlPN~e-DvA~fL~vn~~~glfsFd~~yRP-vpL~~~~iG~k~~~~~~~~~~~d~~ 337 (1230)
T KOG0952|consen 260 TIVARTLRLVESSQSMIRIVGLSATLPNYE-DVARFLRVNPYAGLFSFDQRYRP-VPLTQGFIGIKGKKNRQQKKNIDEV 337 (1230)
T ss_pred HHHHHHHHHHHhhhhheEEEEeeccCCCHH-HHHHHhcCCCccceeeecccccc-cceeeeEEeeecccchhhhhhHHHH
Confidence 555443 34678999999999742 2332222222 22333333222 2344445444332 11 122
Q ss_pred HHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc----C-------------------CCceeecCCCCHHHHHHHHHH
Q 003924 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----G-------------------LEPSVCYGDMDQDARKIHVSR 311 (786)
Q Consensus 255 Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~----g-------------------~~v~~lhg~l~q~~R~~~l~~ 311 (786)
...-+.+.+..+.+++|||.++......++.|.+. | ....++|.+|...+|..+...
T Consensus 338 ~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 338 CYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 23334445567899999999999888888877653 1 235678999999999999999
Q ss_pred HhcCCcEEEEEecccccccCCCCcceeE----ecCCC------CCHhHHHHHhhccccC--CCccEEEEEEecccHHHHH
Q 003924 312 FRARKTMFLIVTDVAARGIDIPLLDNVI----NWDFP------PKPKIFVHRVGRAARA--GRTGTAFSFVTSEDMAYLL 379 (786)
Q Consensus 312 F~~g~~~ILVaTdv~arGlDIp~v~~VI----~~d~P------~s~~~~vQRvGR~gR~--G~~G~ai~lv~~~e~~~l~ 379 (786)
|..|.++||+||..+|.|+|+|.-.++| .||.- -..-+.+|..||+||. +..|.++++-+.+-+.+..
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~ 497 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYE 497 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHH
Confidence 9999999999999999999999755554 23321 2445679999999996 4569998888877766554
Q ss_pred HH
Q 003924 380 DL 381 (786)
Q Consensus 380 ~l 381 (786)
.|
T Consensus 498 sL 499 (1230)
T KOG0952|consen 498 SL 499 (1230)
T ss_pred HH
Confidence 44
No 89
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=7.7e-28 Score=272.69 Aligned_cols=292 Identities=23% Similarity=0.277 Sum_probs=203.3
Q ss_pred CCChHHHHHHHHHHHc----CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccC
Q 003924 44 KVPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (786)
Q Consensus 44 ~~ptpiQ~~aip~il~----g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~ 119 (786)
..|+|+|++++..+.. ++..++++|||+|||.+++..+... ...+||||||.+|+.||.+.+..+...
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------~~~~Lvlv~~~~L~~Qw~~~~~~~~~~ 106 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------KRSTLVLVPTKELLDQWAEALKKFLLL 106 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------cCCEEEEECcHHHHHHHHHHHHHhcCC
Confidence 3799999999999998 8899999999999999877544433 223999999999999998766654422
Q ss_pred CCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccC
Q 003924 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199 (786)
Q Consensus 120 ~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~ 199 (786)
. .....+||..... .. ..|+|+|...+..... ...+..+.+.+|||||||++....|..... .+...
T Consensus 107 ~--~~~g~~~~~~~~~-----~~-~~i~vat~qtl~~~~~-l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~----~~~~~ 173 (442)
T COG1061 107 N--DEIGIYGGGEKEL-----EP-AKVTVATVQTLARRQL-LDEFLGNEFGLIIFDEVHHLPAPSYRRILE----LLSAA 173 (442)
T ss_pred c--cccceecCceecc-----CC-CcEEEEEhHHHhhhhh-hhhhcccccCEEEEEccccCCcHHHHHHHH----hhhcc
Confidence 1 1223333332111 01 3699999999876421 113445578999999999987654443333 33322
Q ss_pred CceEEEeccCcHHHHH---HHHhcCCCCcceeeccccccC----CCceeeeee---------------------------
Q 003924 200 RQTLLFSATLPSALAE---FAKAGLRDPHLVRLDVDTKIS----PDLKLAFFT--------------------------- 245 (786)
Q Consensus 200 ~q~ll~SATl~~~l~~---~~~~~l~~p~~i~~~~~~~~~----~~l~~~~~~--------------------------- 245 (786)
..+|++||||+..-.. .....++ |..+.......+. .......+.
T Consensus 174 ~~~LGLTATp~R~D~~~~~~l~~~~g-~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~ 252 (442)
T COG1061 174 YPRLGLTATPEREDGGRIGDLFDLIG-PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT 252 (442)
T ss_pred cceeeeccCceeecCCchhHHHHhcC-CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh
Confidence 2289999998633211 1111111 2222222111110 000000000
Q ss_pred -----------cchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhc
Q 003924 246 -----------LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314 (786)
Q Consensus 246 -----------v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~ 314 (786)
.....+...+..++.... .+.++||||++..++..++..|...++ +..++|..+..+|..+++.|+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~ 330 (442)
T COG1061 253 LRAENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRT 330 (442)
T ss_pred hhHHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHc
Confidence 011122333333343332 577999999999999999999988888 8899999999999999999999
Q ss_pred CCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhcccc
Q 003924 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAAR 359 (786)
Q Consensus 315 g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR 359 (786)
|.+++||++.|+..|+|+|+++++|......|+..|+||+||.-|
T Consensus 331 g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 331 GGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred CCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhcc
Confidence 999999999999999999999999999999999999999999999
No 90
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=5.9e-27 Score=277.43 Aligned_cols=350 Identities=22% Similarity=0.227 Sum_probs=272.9
Q ss_pred CCCCCchhHhhHHHHhhccC---------------CCCCccCCCCCHHHHHHHH-HCCCCCChHHHHHHHHHHHcC----
Q 003924 1 MSLVSSKAELKRREKQKKKS---------------KSGGFESLNLSPNVFRAIK-RKGYKVPTPIQRKTMPLILSG---- 60 (786)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~---------------~~~~f~~lgLs~~ll~~l~-~~g~~~ptpiQ~~aip~il~g---- 60 (786)
+..|++.+|.+.+++-+++- -..+| .+..+.+...... ..+| +-||-|..||..+...
T Consensus 536 L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~-af~~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~ 613 (1139)
T COG1197 536 LHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGF-AFPPDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESG 613 (1139)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-CCCCChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccC
Confidence 35688899988888765431 12233 2344555555544 3577 7899999999998853
Q ss_pred --CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHH
Q 003924 61 --ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (786)
Q Consensus 61 --~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~ 138 (786)
-|=++||..|-|||.+++-+++-... .|.++.|||||--||.|-++.|++-....++++..+..-.+..++..
T Consensus 614 kpMDRLiCGDVGFGKTEVAmRAAFkAV~-----~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~ 688 (1139)
T COG1197 614 KPMDRLICGDVGFGKTEVAMRAAFKAVM-----DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKE 688 (1139)
T ss_pred CcchheeecCcCCcHHHHHHHHHHHHhc-----CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHH
Confidence 37899999999999999988886655 47899999999999999999999877888999998887777766655
Q ss_pred HH----cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcHHHH
Q 003924 139 EL----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALA 214 (786)
Q Consensus 139 ~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~ 214 (786)
.+ .+..||||+|.- +|. .++.+.+++++||||-|| |.-.-.+-++.+..+.-+|-+||||-+..-
T Consensus 689 il~~la~G~vDIvIGTHr----LL~--kdv~FkdLGLlIIDEEqR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL 757 (1139)
T COG1197 689 ILKGLAEGKVDIVIGTHR----LLS--KDVKFKDLGLLIIDEEQR-----FGVKHKEKLKELRANVDVLTLSATPIPRTL 757 (1139)
T ss_pred HHHHHhcCCccEEEechH----hhC--CCcEEecCCeEEEechhh-----cCccHHHHHHHHhccCcEEEeeCCCCcchH
Confidence 44 357999999953 233 478899999999999999 556667777778889999999999977777
Q ss_pred HHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc--CCC
Q 003924 215 EFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLE 292 (786)
Q Consensus 215 ~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~--g~~ 292 (786)
.++-.++++-.+|........+ +...+...++ ..+...|..-+..++++-..+|.++..+.+...|+.. ...
T Consensus 758 ~Msm~GiRdlSvI~TPP~~R~p--V~T~V~~~d~----~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEar 831 (1139)
T COG1197 758 NMSLSGIRDLSVIATPPEDRLP--VKTFVSEYDD----LLIREAILRELLRGGQVFYVHNRVESIEKKAERLRELVPEAR 831 (1139)
T ss_pred HHHHhcchhhhhccCCCCCCcc--eEEEEecCCh----HHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceE
Confidence 8888899888777554443322 1111111111 2233333333457899999999999999999999886 456
Q ss_pred ceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCC-CCHhHHHHHhhccccCCCccEEEEEEe
Q 003924 293 PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFP-PKPKIFVHRVGRAARAGRTGTAFSFVT 371 (786)
Q Consensus 293 v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P-~s~~~~vQRvGR~gR~G~~G~ai~lv~ 371 (786)
+.+.||.|+..+-+.++..|-+|+.+|||||.+++.|||||+++.+|..+.- ....++.|--||+||..+.+.||.++.
T Consensus 832 I~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p 911 (1139)
T COG1197 832 IAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYP 911 (1139)
T ss_pred EEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeec
Confidence 8899999999999999999999999999999999999999999998854432 345788999999999999999999998
Q ss_pred ccc
Q 003924 372 SED 374 (786)
Q Consensus 372 ~~e 374 (786)
+..
T Consensus 912 ~~k 914 (1139)
T COG1197 912 PQK 914 (1139)
T ss_pred Ccc
Confidence 754
No 91
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=5.1e-27 Score=274.21 Aligned_cols=320 Identities=20% Similarity=0.245 Sum_probs=231.7
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.|. .|+++|--+.=.+..|+ |+...||+|||+++.+|++-.... |..+-|++||--||.|-++++..+..+.
T Consensus 77 ~g~-~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~-----G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT-----GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred hCC-CCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc-----CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 566 79999988876666665 999999999999999998876554 6779999999999999999999999999
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-HHHHhhc-----cCCCCCceeeEEeCCcccccc------------
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFG------------ 182 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~~-----~~l~l~~l~~vV~DEah~l~~------------ 182 (786)
|++|.+++++.+..+..... .+||+++|...| +++|... ...-...+.+.||||+|.++-
T Consensus 149 Gl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~ 226 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQ 226 (796)
T ss_pred CCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCC
Confidence 99999999877666554443 689999999765 3334331 112234578999999997651
Q ss_pred ---C-ChHHHHHHHHhhcccC-------------------C---------------------------------------
Q 003924 183 ---M-GFAEQLHKILGQLSEN-------------------R--------------------------------------- 200 (786)
Q Consensus 183 ---~-gf~~~l~~Il~~l~~~-------------------~--------------------------------------- 200 (786)
+ .+...+..++..+... .
T Consensus 227 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 227 AEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred CCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence 0 0112222222221110 0
Q ss_pred ----------------------------------------------------------------------ceEEEeccCc
Q 003924 201 ----------------------------------------------------------------------QTLLFSATLP 210 (786)
Q Consensus 201 ----------------------------------------------------------------------q~ll~SATl~ 210 (786)
++.+||+|..
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 1223333333
Q ss_pred HHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcC
Q 003924 211 SALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG 290 (786)
Q Consensus 211 ~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g 290 (786)
.+-.+|...|--+ ++.++...+....-....+......|...+...+......+.++||||+|+..++.++..|...+
T Consensus 387 ~e~~Ef~~iY~l~--vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~g 464 (796)
T PRK12906 387 TEEEEFREIYNME--VITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAG 464 (796)
T ss_pred HHHHHHHHHhCCC--EEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 2222222222111 11111110000000011233345678889999998776788999999999999999999999999
Q ss_pred CCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCC---Ccc-----eeEecCCCCCHhHHHHHhhccccCCC
Q 003924 291 LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP---LLD-----NVINWDFPPKPKIFVHRVGRAARAGR 362 (786)
Q Consensus 291 ~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp---~v~-----~VI~~d~P~s~~~~vQRvGR~gR~G~ 362 (786)
+++..+|+.+.+.++..+...++.|. |+|||++|+||+||+ .|. +||+++.|.+...+.|+.||+||+|.
T Consensus 465 i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~ 542 (796)
T PRK12906 465 IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGD 542 (796)
T ss_pred CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCC
Confidence 99999999999888888877777776 999999999999995 788 99999999999999999999999999
Q ss_pred ccEEEEEEeccc
Q 003924 363 TGTAFSFVTSED 374 (786)
Q Consensus 363 ~G~ai~lv~~~e 374 (786)
+|.+..|++.+|
T Consensus 543 ~G~s~~~~sleD 554 (796)
T PRK12906 543 PGSSRFYLSLED 554 (796)
T ss_pred CcceEEEEeccc
Confidence 999999999875
No 92
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=2.5e-26 Score=267.32 Aligned_cols=410 Identities=23% Similarity=0.268 Sum_probs=281.9
Q ss_pred CCCCCHHHHHHHHHCCCC----------------------CChHHHHHHHHHHHcC----CcEEEEcCCCChHHHHHHHH
Q 003924 27 SLNLSPNVFRAIKRKGYK----------------------VPTPIQRKTMPLILSG----ADVVAMARTGSGKTAAFLVP 80 (786)
Q Consensus 27 ~lgLs~~ll~~l~~~g~~----------------------~ptpiQ~~aip~il~g----~dvvl~a~TGSGKT~afllp 80 (786)
.++.+..+++.+.+.|+. .+++-|..++..|... ...++.|.||||||.+|+-.
T Consensus 158 ~~~~s~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~ 237 (730)
T COG1198 158 AAGVSLSVLKGLEKKGLIEIIELEPPLVVAPPDPSLSEWLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEA 237 (730)
T ss_pred hcchhHHHHHHHHhcCceeeecccCCCcccccccccccccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHH
Confidence 446777788888877754 4678999999999866 56999999999999999977
Q ss_pred HHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH-HccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHh
Q 003924 81 MLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE-LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLS 159 (786)
Q Consensus 81 ile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~-l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~ 159 (786)
+-+.|.. |..+|||+|...|..|+.+.|+. |+....+-++-+..+.....|.+...+...|||+|...+
T Consensus 238 i~~~L~~-----GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl----- 307 (730)
T COG1198 238 IAKVLAQ-----GKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL----- 307 (730)
T ss_pred HHHHHHc-----CCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-----
Confidence 7777764 78899999999999999988775 553333333333344445556666678999999999887
Q ss_pred hccCCCCCceeeEEeCCccccc-----cCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccc
Q 003924 160 EVEDMSLKSVEYVVFDEADCLF-----GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK 234 (786)
Q Consensus 160 ~~~~l~l~~l~~vV~DEah~l~-----~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~ 234 (786)
..+|.++++||+||-|.-. ...+...-..++..-..++++||.|||++ ++.+....-+.+..+.+.....
T Consensus 308 ---F~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPS--LES~~~~~~g~y~~~~L~~R~~ 382 (730)
T COG1198 308 ---FLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPS--LESYANAESGKYKLLRLTNRAG 382 (730)
T ss_pred ---cCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCC--HHHHHhhhcCceEEEEcccccc
Confidence 4789999999999999754 23455666666666667999999999954 6666666444455555555444
Q ss_pred cCCCceeeeeecchHH------HHHHHHHHHHHhccCCCcEEEEEcchhhH-----------------------------
Q 003924 235 ISPDLKLAFFTLRQEE------KHAALLYMIREHISSDQQTLIFVSTKHHV----------------------------- 279 (786)
Q Consensus 235 ~~~~l~~~~~~v~~~~------k~~~Ll~lL~~~~~~~~k~IVF~~t~~~a----------------------------- 279 (786)
........++.++.+. -...|++.|++.+..+.++|||+|.+-.+
T Consensus 383 ~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~ 462 (730)
T COG1198 383 RARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQ 462 (730)
T ss_pred ccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCe
Confidence 2222333333333221 23678999999999999999999865332
Q ss_pred -------------------------------HHHHHHHHHc--CCCceeecCCCCHH--HHHHHHHHHhcCCcEEEEEec
Q 003924 280 -------------------------------EFLNVLFREE--GLEPSVCYGDMDQD--ARKIHVSRFRARKTMFLIVTD 324 (786)
Q Consensus 280 -------------------------------e~l~~~L~~~--g~~v~~lhg~l~q~--~R~~~l~~F~~g~~~ILVaTd 324 (786)
+.+.+.|... +..+..+.++.... .-+..+..|.+|+.+|||.|+
T Consensus 463 L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQ 542 (730)
T COG1198 463 LRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQ 542 (730)
T ss_pred eEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecch
Confidence 2333444332 34455555554433 345679999999999999999
Q ss_pred ccccccCCCCcceeEecCC---------CC---CHhHHHHHhhccccCCCccEEEEEEeccc-----------HHHHHHH
Q 003924 325 VAARGIDIPLLDNVINWDF---------PP---KPKIFVHRVGRAARAGRTGTAFSFVTSED-----------MAYLLDL 381 (786)
Q Consensus 325 v~arGlDIp~v~~VI~~d~---------P~---s~~~~vQRvGR~gR~G~~G~ai~lv~~~e-----------~~~l~~l 381 (786)
+++.|.|+|++++|...|. -. ....+.|-.||+||++.+|.+++-.-.-| +.-|..-
T Consensus 543 miaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~~dy~~F~~~ 622 (730)
T COG1198 543 MIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKRGDYEAFYEQ 622 (730)
T ss_pred hhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHhcCHHHHHHH
Confidence 9999999999998774432 22 33456999999999999998876554333 4445555
Q ss_pred HHHhcCCCCCCCCHH------------HHHhhhhhHHHHHHHHHhcCCccccccchhHHHHHHHHHHHHHHhhhhhHHHH
Q 003924 382 HLFLSKPIRAAPSEE------------EVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREIIDSSADLNSLQ 449 (786)
Q Consensus 382 ~~~l~~~~~~~p~~e------------~~~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~l~~l~ 449 (786)
++..++.+..+|... .+......+...+......+..++|+.|.++......+..+++-....-..|.
T Consensus 623 El~~Rk~~~~PPf~~l~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vlGP~~a~~~r~~~~yR~qiLl~~~~~~~L~ 702 (730)
T COG1198 623 ELAERKELGLPPFSRLAAVIASAKNEEKALEFARALRELLKEALPVDVEVLGPAPAPLAKLAGRYRYQILLKSPSRADLQ 702 (730)
T ss_pred HHHHHHhcCCCChhhheeeEecCCCHHHHHHHHHHHHHHHHhcccccceeeCCCcchhHHhCCceEEEEEEecCcHHHHH
Confidence 556666777777433 22222333333333444455689999999998877666555554433333344
Q ss_pred HH
Q 003924 450 RT 451 (786)
Q Consensus 450 ~~ 451 (786)
+.
T Consensus 703 ~~ 704 (730)
T COG1198 703 KL 704 (730)
T ss_pred HH
Confidence 44
No 93
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.95 E-value=4.6e-26 Score=237.05 Aligned_cols=339 Identities=18% Similarity=0.252 Sum_probs=255.7
Q ss_pred cCCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHH
Q 003924 26 ESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (786)
Q Consensus 26 ~~lgLs~~ll~~l~~-~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptre 104 (786)
++++.|......|+. ......+|.|..+|...+.|.++++..|||.||++||.+|++.. ...+||+||...
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a--------dg~alvi~plis 145 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA--------DGFALVICPLIS 145 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc--------CCceEeechhHH
Confidence 356677777666664 34557899999999999999999999999999999999999865 335999999999
Q ss_pred HHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHH---HH---cCCCCEEEECcHHHHHHHhhc----cCCCCCceeeEEe
Q 003924 105 LALQTLKFTKELGRYTDLRISLLVGGDSMESQFE---EL---AQNPDIIIATPGRLMHHLSEV----EDMSLKSVEYVVF 174 (786)
Q Consensus 105 La~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~---~l---~~~~dIiV~Tpgrll~~l~~~----~~l~l~~l~~vV~ 174 (786)
|.....-.++.++ +....+....+.++... .+ .....+++.||+.+..--..| ..+....+.+|.+
T Consensus 146 lmedqil~lkqlg----i~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iai 221 (695)
T KOG0353|consen 146 LMEDQILQLKQLG----IDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAI 221 (695)
T ss_pred HHHHHHHHHHHhC----cchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEee
Confidence 9998777888876 66666665555544321 22 234668999999764322111 1456777889999
Q ss_pred CCccccccCC--hHHHH--HHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeee--cch
Q 003924 175 DEADCLFGMG--FAEQL--HKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT--LRQ 248 (786)
Q Consensus 175 DEah~l~~~g--f~~~l--~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~--v~~ 248 (786)
||+|....|| |..++ ..|+.+.-++..+|+++||.++.+..-++..|.-...+.+... -..+++...+.. -..
T Consensus 222 devhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~-fnr~nl~yev~qkp~n~ 300 (695)
T KOG0353|consen 222 DEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG-FNRPNLKYEVRQKPGNE 300 (695)
T ss_pred cceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc-cCCCCceeEeeeCCCCh
Confidence 9999999887 44433 3455555568899999999887766555543322211112111 112222222211 123
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeccccc
Q 003924 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (786)
Q Consensus 249 ~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~ar 328 (786)
++-...+..++...+ .+...||||-+...++.++..|+..|+.....|..|.+.++.-+-+.|..|++.|+|+|-+.+.
T Consensus 301 dd~~edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgm 379 (695)
T KOG0353|consen 301 DDCIEDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGM 379 (695)
T ss_pred HHHHHHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecc
Confidence 444555666665443 4677899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceeEecCCCCCHhHHHH-------------------------------------------HhhccccCCCccE
Q 003924 329 GIDIPLLDNVINWDFPPKPKIFVH-------------------------------------------RVGRAARAGRTGT 365 (786)
Q Consensus 329 GlDIp~v~~VI~~d~P~s~~~~vQ-------------------------------------------RvGR~gR~G~~G~ 365 (786)
|||-|+|..||+..+|.+...|.| -.||+||.+.+..
T Consensus 380 gidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~ 459 (695)
T KOG0353|consen 380 GIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKAD 459 (695)
T ss_pred cCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCccc
Confidence 999999999999999999999999 6799999999999
Q ss_pred EEEEEecccHHHH
Q 003924 366 AFSFVTSEDMAYL 378 (786)
Q Consensus 366 ai~lv~~~e~~~l 378 (786)
|++++.-.|+..+
T Consensus 460 cilyy~~~difk~ 472 (695)
T KOG0353|consen 460 CILYYGFADIFKI 472 (695)
T ss_pred EEEEechHHHHhH
Confidence 9999987776443
No 94
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.94 E-value=3.6e-25 Score=271.81 Aligned_cols=309 Identities=18% Similarity=0.264 Sum_probs=198.6
Q ss_pred CCChHHHHHHHHHHHc----C-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHcc
Q 003924 44 KVPTPIQRKTMPLILS----G-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (786)
Q Consensus 44 ~~ptpiQ~~aip~il~----g-~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~ 118 (786)
..|+|+|..||..+.. | +.++++++||||||.+++ .++..|... ....++|||+|+.+|+.|+.+.|..++-
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~--~~~~rVLfLvDR~~L~~Qa~~~F~~~~~ 488 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKA--KRFRRILFLVDRSALGEQAEDAFKDTKI 488 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhc--CccCeEEEEecHHHHHHHHHHHHHhccc
Confidence 3689999999988763 3 679999999999998854 344455432 1345899999999999999999888743
Q ss_pred CCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhc----cCCCCCceeeEEeCCcccccc----C-------
Q 003924 119 YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV----EDMSLKSVEYVVFDEADCLFG----M------- 183 (786)
Q Consensus 119 ~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~----~~l~l~~l~~vV~DEah~l~~----~------- 183 (786)
.....+..+++....... .......|+|+|+..|...+... ..+.+..+++||+||||+... +
T Consensus 489 ~~~~~~~~i~~i~~L~~~--~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~ 566 (1123)
T PRK11448 489 EGDQTFASIYDIKGLEDK--FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQF 566 (1123)
T ss_pred ccccchhhhhchhhhhhh--cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhcc
Confidence 222222222221111111 11245789999999987765321 124577889999999999631 1
Q ss_pred ----ChHHHHHHHHhhcccCCceEEEeccCcHHHHHHH-------------HhcC-CC---Ccceeecccc---ccCCC-
Q 003924 184 ----GFAEQLHKILGQLSENRQTLLFSATLPSALAEFA-------------KAGL-RD---PHLVRLDVDT---KISPD- 238 (786)
Q Consensus 184 ----gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~-------------~~~l-~~---p~~i~~~~~~---~~~~~- 238 (786)
.+...+..++..+ +...|+|||||......+. ..+. .+ |..+...... .....
T Consensus 567 ~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e 644 (1123)
T PRK11448 567 RDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGE 644 (1123)
T ss_pred chhhhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccc
Confidence 1245677777765 3567999999864322211 1111 10 1111110000 00000
Q ss_pred -c---e-----eeeeecch---------------HHHHHHHHHHHHHhcc--CCCcEEEEEcchhhHHHHHHHHHHc---
Q 003924 239 -L---K-----LAFFTLRQ---------------EEKHAALLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE--- 289 (786)
Q Consensus 239 -l---~-----~~~~~v~~---------------~~k~~~Ll~lL~~~~~--~~~k~IVF~~t~~~ae~l~~~L~~~--- 289 (786)
+ . ........ ......++..+.+.+. ..+++||||.++.||+.+...|...
T Consensus 645 ~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~ 724 (1123)
T PRK11448 645 EVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKK 724 (1123)
T ss_pred hhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 0 0 00000000 0011112222222221 2479999999999999999887653
Q ss_pred ---CC---CceeecCCCCHHHHHHHHHHHhcCCc-EEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCC
Q 003924 290 ---GL---EPSVCYGDMDQDARKIHVSRFRARKT-MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361 (786)
Q Consensus 290 ---g~---~v~~lhg~l~q~~R~~~l~~F~~g~~-~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G 361 (786)
++ .+..++|+.+ .+..+++.|+++.. .|||+++++.+|+|+|.|++||++.++.|...|+|++||+.|..
T Consensus 725 ~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~ 801 (1123)
T PRK11448 725 KYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLC 801 (1123)
T ss_pred hcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCC
Confidence 22 4566888876 45679999999886 69999999999999999999999999999999999999999964
No 95
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=3e-25 Score=259.67 Aligned_cols=320 Identities=20% Similarity=0.236 Sum_probs=230.7
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.|. .|+++|--.-=.+ .+.-|+.++||.|||++|.+|++..... |..+.||+|+++||.|.++++..+..++
T Consensus 79 lgm-~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~-----g~~VhIvT~ndyLA~RD~e~m~~l~~~l 150 (908)
T PRK13107 79 FEM-RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALT-----GKGVHVITVNDYLARRDAENNRPLFEFL 150 (908)
T ss_pred hCC-CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhc-----CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 455 6777887554344 3456999999999999999999876653 4559999999999999999999999999
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-HHHHhhccCCCC-----CceeeEEeCCccccccC-----------
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMSL-----KSVEYVVFDEADCLFGM----------- 183 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~~~~l~l-----~~l~~vV~DEah~l~~~----------- 183 (786)
|+++.+++++.+....... -.++|+++||+.| +++|...-.+.. ..+.++||||+|.++-.
T Consensus 151 Glsv~~i~~~~~~~~r~~~--Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~ 228 (908)
T PRK13107 151 GLTVGINVAGLGQQEKKAA--YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGA 228 (908)
T ss_pred CCeEEEecCCCCHHHHHhc--CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCC
Confidence 9999999998876543322 2789999999999 888876312232 67889999999987621
Q ss_pred -----ChHHHHHHHHhhcc-------------------cCCceEEE----------------------------------
Q 003924 184 -----GFAEQLHKILGQLS-------------------ENRQTLLF---------------------------------- 205 (786)
Q Consensus 184 -----gf~~~l~~Il~~l~-------------------~~~q~ll~---------------------------------- 205 (786)
.+...+..++..+. ...+.+.+
T Consensus 229 ~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~ 308 (908)
T PRK13107 229 AEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLH 308 (908)
T ss_pred CccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHH
Confidence 01222222222211 01112222
Q ss_pred --------------------------------------------------------------------------------
Q 003924 206 -------------------------------------------------------------------------------- 205 (786)
Q Consensus 206 -------------------------------------------------------------------------------- 205 (786)
T Consensus 309 ~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~ 388 (908)
T PRK13107 309 HVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLA 388 (908)
T ss_pred HHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhh
Confidence
Q ss_pred --eccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHH
Q 003924 206 --SATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLN 283 (786)
Q Consensus 206 --SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~ 283 (786)
|+|....-.+|...|--+ ++.+.........-....+.....+|..+++..+.+....+.++||||.|+..++.++
T Consensus 389 GMTGTa~te~~Ef~~iY~l~--Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls 466 (908)
T PRK13107 389 GMTGTADTEAFEFQHIYGLD--TVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLA 466 (908)
T ss_pred cccCCChHHHHHHHHHhCCC--EEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHH
Confidence 222211111111111000 0000000000000001112333567888899888888788999999999999999999
Q ss_pred HHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCc----------------------------
Q 003924 284 VLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL---------------------------- 335 (786)
Q Consensus 284 ~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v---------------------------- 335 (786)
.+|...++.+..+|+.+++.++..+...|+.|. |+|||++|+||+||.--
T Consensus 467 ~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~ 544 (908)
T PRK13107 467 RLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIR 544 (908)
T ss_pred HHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhh
Confidence 999999999999999999999999999999998 99999999999999732
Q ss_pred ---------ceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEeccc
Q 003924 336 ---------DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (786)
Q Consensus 336 ---------~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e 374 (786)
-+||-...+.|...=.|-.||+||.|.+|.+..|++-+|
T Consensus 545 ~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 545 HDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred HHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 378888889998889999999999999999999999866
No 96
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=9e-25 Score=254.38 Aligned_cols=341 Identities=21% Similarity=0.296 Sum_probs=248.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCC------CCCeEEEEEcCc
Q 003924 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVP------QGGVRALILSPT 102 (786)
Q Consensus 30 Ls~~ll~~l~~~g~~~ptpiQ~~aip~il~g-~dvvl~a~TGSGKT~afllpile~L~~~~~------~~g~r~LIL~Pt 102 (786)
+|.+-..+.. |+.++.++|-...+..+.+ .++++|||||+|||-++++-+++.+..+.. ....+++|++|.
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPm 373 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPM 373 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeH
Confidence 4444444443 7778999999999999987 479999999999999999999999988765 234689999999
Q ss_pred HHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhc-cCCC-CCceeeEEeCCcccc
Q 003924 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV-EDMS-LKSVEYVVFDEADCL 180 (786)
Q Consensus 103 reLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~-~~l~-l~~l~~vV~DEah~l 180 (786)
.+|+..+...|.......+++|.-++|......+- -.+..|+||||+.. +.+.+. ++.. .+-++++|+||.|.+
T Consensus 374 KaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~-DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 374 KALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKW-DIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchh-hhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 99999998887777778899999999976543321 13588999999986 444442 1222 345789999999987
Q ss_pred ccCChHHHHHHHHhhc-------ccCCceEEEeccCcHHH--HHHHHhcCCCCcceeeccccccCCCceeeeeecchHH-
Q 003924 181 FGMGFAEQLHKILGQL-------SENRQTLLFSATLPSAL--AEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE- 250 (786)
Q Consensus 181 ~~~gf~~~l~~Il~~l-------~~~~q~ll~SATl~~~l--~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~- 250 (786)
-+. ..+.+..|..+. ...++.+++|||+|+-. ..|+.... +.+...+...... .+.+.|+.+....
T Consensus 450 hDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~--~glf~fd~syRpv-PL~qq~Igi~ek~~ 525 (1674)
T KOG0951|consen 450 HDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP--EGLFYFDSSYRPV-PLKQQYIGITEKKP 525 (1674)
T ss_pred ccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc--ccccccCcccCcC-CccceEeccccCCc
Confidence 543 345555554433 24789999999999753 33333322 4445555444433 4666676654322
Q ss_pred --HHH----HHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHH------------------------------------
Q 003924 251 --KHA----ALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE------------------------------------ 288 (786)
Q Consensus 251 --k~~----~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~------------------------------------ 288 (786)
+.. ...+-+.++..+ +++|||+-+++..-..+..++.
T Consensus 526 ~~~~qamNe~~yeKVm~~agk-~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkd 604 (1674)
T KOG0951|consen 526 LKRFQAMNEACYEKVLEHAGK-NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKD 604 (1674)
T ss_pred hHHHHHHHHHHHHHHHHhCCC-CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHH
Confidence 222 233333444444 8999999998877766666552
Q ss_pred -cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeE----ecCC------CCCHhHHHHHhhcc
Q 003924 289 -EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI----NWDF------PPKPKIFVHRVGRA 357 (786)
Q Consensus 289 -~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI----~~d~------P~s~~~~vQRvGR~ 357 (786)
..+.++++|.+|+..+|....+.|+.|.++|||+|-.+|+|+|+|.-+++| .||+ +.+|.+.+|++||+
T Consensus 605 LLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgra 684 (1674)
T KOG0951|consen 605 LLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRA 684 (1674)
T ss_pred HhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhc
Confidence 135678999999999999999999999999999999999999999877766 3443 46889999999999
Q ss_pred ccCCC--ccEEEEEEecccHHHHHHH
Q 003924 358 ARAGR--TGTAFSFVTSEDMAYLLDL 381 (786)
Q Consensus 358 gR~G~--~G~ai~lv~~~e~~~l~~l 381 (786)
||.+. .|..+++-...|+.|...+
T Consensus 685 grp~~D~~gegiiit~~se~qyyls~ 710 (1674)
T KOG0951|consen 685 GRPQYDTCGEGIIITDHSELQYYLSL 710 (1674)
T ss_pred CCCccCcCCceeeccCchHhhhhHHh
Confidence 99865 4677777777777765554
No 97
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.93 E-value=1.4e-24 Score=213.84 Aligned_cols=165 Identities=38% Similarity=0.593 Sum_probs=143.1
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEE
Q 003924 47 TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISL 126 (786)
Q Consensus 47 tpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~ 126 (786)
||+|.++++.+.+++++++.||||+|||++|++|++..+... ...++||++|+++|+.|+.+.+..+....++.+..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~---~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG---KDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT---SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC---CCceEEEEeeccccccccccccccccccccccccc
Confidence 799999999999999999999999999999999999988764 23489999999999999999999998888899999
Q ss_pred EEcCCChh-HHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhccc--CCceE
Q 003924 127 LVGGDSME-SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE--NRQTL 203 (786)
Q Consensus 127 l~gg~~~~-~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~--~~q~l 203 (786)
++|+.... .....+..+++|+|+||++|++++... ...+.++++|||||+|.+...++...+..|+..+.. +.+++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~-~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i 156 (169)
T PF00270_consen 78 LHGGQSISEDQREVLSNQADILVTTPEQLLDLISNG-KINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQII 156 (169)
T ss_dssp ESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTT-SSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEE
T ss_pred ccccccccccccccccccccccccCcchhhcccccc-ccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEE
Confidence 99998865 444445578999999999999999873 346777999999999999998888899999888743 58999
Q ss_pred EEeccCcHHHHH
Q 003924 204 LFSATLPSALAE 215 (786)
Q Consensus 204 l~SATl~~~l~~ 215 (786)
++|||++..+..
T Consensus 157 ~~SAT~~~~~~~ 168 (169)
T PF00270_consen 157 LLSATLPSNVEK 168 (169)
T ss_dssp EEESSSTHHHHH
T ss_pred EEeeCCChhHhh
Confidence 999999966543
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.92 E-value=4.2e-23 Score=214.06 Aligned_cols=302 Identities=21% Similarity=0.253 Sum_probs=217.4
Q ss_pred CChHHHHHHHHHHH----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 45 ~ptpiQ~~aip~il----~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
++||.|+.+-..++ +..+.+++|.||+|||.... +.++.... .|.++.|.+|....+..++..++.-. .
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif-~~i~~al~----~G~~vciASPRvDVclEl~~Rlk~aF--~ 169 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIF-QGIEQALN----QGGRVCIASPRVDVCLELYPRLKQAF--S 169 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhH-HHHHHHHh----cCCeEEEecCcccchHHHHHHHHHhh--c
Confidence 68999999887666 45899999999999998744 44444443 47889999999999999998887643 4
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHH-hhcccC
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL-GQLSEN 199 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il-~~l~~~ 199 (786)
+..+.+++|+..... ...++|+|...|+..-. .++++|+||+|...- .-...|...+ ......
T Consensus 170 ~~~I~~Lyg~S~~~f-------r~plvVaTtHQLlrFk~--------aFD~liIDEVDAFP~-~~d~~L~~Av~~ark~~ 233 (441)
T COG4098 170 NCDIDLLYGDSDSYF-------RAPLVVATTHQLLRFKQ--------AFDLLIIDEVDAFPF-SDDQSLQYAVKKARKKE 233 (441)
T ss_pred cCCeeeEecCCchhc-------cccEEEEehHHHHHHHh--------hccEEEEeccccccc-cCCHHHHHHHHHhhccc
Confidence 577888888665322 26799999888875443 467899999997542 2223444333 334456
Q ss_pred CceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHH-HH------HHHHHHHHHhccCCCcEEEE
Q 003924 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KH------AALLYMIREHISSDQQTLIF 272 (786)
Q Consensus 200 ~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~-k~------~~Ll~lL~~~~~~~~k~IVF 272 (786)
.-+|++|||+|+.+..-+..+ +-..+.+....-..+.+...|+.+..-. ++ ..|...|......+.+++||
T Consensus 234 g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF 311 (441)
T COG4098 234 GATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIF 311 (441)
T ss_pred CceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 789999999998877655543 2233444443333333333343333322 22 36788888888889999999
Q ss_pred EcchhhHHHHHHHHHH-cCC-CceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecC--CCCCHh
Q 003924 273 VSTKHHVEFLNVLFRE-EGL-EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD--FPPKPK 348 (786)
Q Consensus 273 ~~t~~~ae~l~~~L~~-~g~-~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d--~P~s~~ 348 (786)
+++....+.++..|+. ... .+..+|+. ...|.+.+..||+|+..|||+|.+++||+.+|+|+++|.-. .-.+..
T Consensus 312 ~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTes 389 (441)
T COG4098 312 FPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTES 389 (441)
T ss_pred ecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHH
Confidence 9999999999999954 333 34677764 23688899999999999999999999999999999977322 225778
Q ss_pred HHHHHhhccccCCC--ccEEEEEEecc
Q 003924 349 IFVHRVGRAARAGR--TGTAFSFVTSE 373 (786)
Q Consensus 349 ~~vQRvGR~gR~G~--~G~ai~lv~~~ 373 (786)
.++|..||+||.-. .|.++.|....
T Consensus 390 aLVQIaGRvGRs~~~PtGdv~FFH~G~ 416 (441)
T COG4098 390 ALVQIAGRVGRSLERPTGDVLFFHYGK 416 (441)
T ss_pred HHHHHhhhccCCCcCCCCcEEEEeccc
Confidence 89999999999633 57776665543
No 99
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.92 E-value=9.7e-23 Score=246.23 Aligned_cols=319 Identities=19% Similarity=0.238 Sum_probs=218.2
Q ss_pred CChHHHHHHHHHHH----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 45 ~ptpiQ~~aip~il----~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.++|+|..++..++ .|...|+...+|.|||+..+..+ ..+..... ....+|||||.. |..||.+++..+. .
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL-~~L~~~~~-~~gp~LIVvP~S-lL~nW~~Ei~kw~--p 243 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLL-GYLHEYRG-ITGPHMVVAPKS-TLGNWMNEIRRFC--P 243 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHH-HHHHHhcC-CCCCEEEEeChH-HHHHHHHHHHHHC--C
Confidence 68999999998775 46789999999999998754333 33332211 223589999975 5677888888876 3
Q ss_pred CCeEEEEEcCCChhHHH-H--HHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcc
Q 003924 121 DLRISLLVGGDSMESQF-E--ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~-~--~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~ 197 (786)
.+.+..++|........ . .....++|+|+|++.+...... +.--.+.+|||||||++-.. ...+..++..+.
T Consensus 244 ~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrIKN~--~Sklskalr~L~ 318 (1033)
T PLN03142 244 VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRIKNE--NSLLSKTMRLFS 318 (1033)
T ss_pred CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCccccCCH--HHHHHHHHHHhh
Confidence 46676676644322211 1 1135689999999998765432 33345789999999998753 355666666665
Q ss_pred cCCceEEEeccCc-HHHHHHHHh-cCCCC----------------------------------cceee---ccccccCCC
Q 003924 198 ENRQTLLFSATLP-SALAEFAKA-GLRDP----------------------------------HLVRL---DVDTKISPD 238 (786)
Q Consensus 198 ~~~q~ll~SATl~-~~l~~~~~~-~l~~p----------------------------------~~i~~---~~~~~~~~~ 238 (786)
....+++||||- +.+.++... .+-.| .+++- +.....++.
T Consensus 319 -a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK 397 (1033)
T PLN03142 319 -TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPK 397 (1033)
T ss_pred -cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCc
Confidence 455688999982 111111110 00001 00000 000001110
Q ss_pred ceee-eee-------------------------------------------------------------cchHHHHHHHH
Q 003924 239 LKLA-FFT-------------------------------------------------------------LRQEEKHAALL 256 (786)
Q Consensus 239 l~~~-~~~-------------------------------------------------------------v~~~~k~~~Ll 256 (786)
.... ++. +....|...|.
T Consensus 398 ~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLd 477 (1033)
T PLN03142 398 KETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLD 477 (1033)
T ss_pred eeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHH
Confidence 0000 000 01123444555
Q ss_pred HHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcC---CcEEEEEecccccccCCC
Q 003924 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR---KTMFLIVTDVAARGIDIP 333 (786)
Q Consensus 257 ~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g---~~~ILVaTdv~arGlDIp 333 (786)
.+|......+.++|||+......+.|..+|...++.+..|+|+++..+|..+++.|... ..-+|++|.+++.|||++
T Consensus 478 kLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt 557 (1033)
T PLN03142 478 KLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLA 557 (1033)
T ss_pred HHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchh
Confidence 55555555688999999999999999999999999999999999999999999999763 345789999999999999
Q ss_pred CcceeEecCCCCCHhHHHHHhhccccCCCccEE--EEEEeccc
Q 003924 334 LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSED 374 (786)
Q Consensus 334 ~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~a--i~lv~~~e 374 (786)
.+++||+||+||+|....|++||+.|.|+...+ |-|++.+-
T Consensus 558 ~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 558 TADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred hCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 999999999999999999999999999987544 56666653
No 100
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.91 E-value=1.2e-22 Score=240.04 Aligned_cols=336 Identities=19% Similarity=0.266 Sum_probs=239.8
Q ss_pred ChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHH-HHHccCCCCeE
Q 003924 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLRI 124 (786)
Q Consensus 46 ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l-~~l~~~~~l~v 124 (786)
-+....+.+..+..++-+|+.|+||||||...-..+++... ..+..+.+.=|.|--|..+++.+ .+++...|-.|
T Consensus 51 v~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~----~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 51 VTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL----GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred cHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc----ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 35566677777888899999999999999854333333322 23446777779998888888755 45666666666
Q ss_pred EEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccc-cccCChHH-HHHHHHhhcccCCce
Q 003924 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC-LFGMGFAE-QLHKILGQLSENRQT 202 (786)
Q Consensus 125 ~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~-l~~~gf~~-~l~~Il~~l~~~~q~ 202 (786)
+.-+-.++. ......|-++|.|.|+..+.. +..|+.+++|||||+|+ .++..|.- .+..++...++..++
T Consensus 127 GY~iRfe~~------~s~~Trik~mTdGiLlrei~~--D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKi 198 (845)
T COG1643 127 GYSIRFESK------VSPRTRIKVMTDGILLREIQN--DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKL 198 (845)
T ss_pred eEEEEeecc------CCCCceeEEeccHHHHHHHhh--CcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceE
Confidence 665554432 234678999999999999986 56699999999999995 33433332 334446666667899
Q ss_pred EEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeee-cchHH-HHHHHHHHHHHhc-cCCCcEEEEEcchhhH
Q 003924 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT-LRQEE-KHAALLYMIREHI-SSDQQTLIFVSTKHHV 279 (786)
Q Consensus 203 ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~-v~~~~-k~~~Ll~lL~~~~-~~~~k~IVF~~t~~~a 279 (786)
|.||||+... -...++.+..++.++.... .++..|.. ...+. -.+.+...+.... ...+.+|||.+.....
T Consensus 199 IimSATld~~---rfs~~f~~apvi~i~GR~f---PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI 272 (845)
T COG1643 199 IIMSATLDAE---RFSAYFGNAPVIEIEGRTY---PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREI 272 (845)
T ss_pred EEEecccCHH---HHHHHcCCCCEEEecCCcc---ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHH
Confidence 9999998764 4455667666666654432 24445522 22333 4455555555543 3467899999999999
Q ss_pred HHHHHHHHH----cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCC------------
Q 003924 280 EFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF------------ 343 (786)
Q Consensus 280 e~l~~~L~~----~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~------------ 343 (786)
+.+++.|.+ ..+.+..+||.|+..++..+++.-..|..+|+++|++|+.+|-||++.+||+-++
T Consensus 273 ~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~ 352 (845)
T COG1643 273 ERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGL 352 (845)
T ss_pred HHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCc
Confidence 999999998 3467889999999999998877777777779999999999999999999996443
Q ss_pred ------CCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCCCHHHHHhhhhhHHHHHHH
Q 003924 344 ------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQ 411 (786)
Q Consensus 344 ------P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~e~~~~~~~~~~~~i~~ 411 (786)
|.|-.+..||.||+||.+ +|.||-+++.++...+ ...+.+|....++.++...+..
T Consensus 353 ~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~~~-----------~~~t~PEIlrtdLs~~vL~l~~ 414 (845)
T COG1643 353 TRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFLAF-----------PEFTLPEILRTDLSGLVLQLKS 414 (845)
T ss_pred eeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHHhc-----------ccCCChhhhhcchHHHHHHHHh
Confidence 456677899999999974 7999999998654321 1223344445566665555543
No 101
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.91 E-value=5.5e-23 Score=246.26 Aligned_cols=331 Identities=23% Similarity=0.248 Sum_probs=224.1
Q ss_pred CChHHHHHHHHHHHcC---C-cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 45 VPTPIQRKTMPLILSG---A-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g---~-dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.+.+.|..++..++.. . .++++||||+|||.+.+++++..+... .....+++++.|++.++.++++.+.......
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 3489999999988864 4 789999999999999999999887764 2357789999999999999999888765444
Q ss_pred CCeEEEEEcCCChhHHHHHH---------------cCCCCEEEECcHHHHHHHhhccCCC-C--CceeeEEeCCcccccc
Q 003924 121 DLRISLLVGGDSMESQFEEL---------------AQNPDIIIATPGRLMHHLSEVEDMS-L--KSVEYVVFDEADCLFG 182 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l---------------~~~~dIiV~Tpgrll~~l~~~~~l~-l--~~l~~vV~DEah~l~~ 182 (786)
++....++| .......... ..-..++++||-.++........+. + -...++||||+|.+.+
T Consensus 274 ~~~~~~~h~-~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~ 352 (733)
T COG1203 274 SVIGKSLHS-SSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYAD 352 (733)
T ss_pred ccccccccc-cccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcc
Confidence 433332222 2222111110 0012345555544433222111111 1 1235899999999887
Q ss_pred CChHHHHHHHHhhcc-cCCceEEEeccCcHHHHHHHHhcCCCCcceeecccccc---CCCceeeeeecchHHHHHHHHHH
Q 003924 183 MGFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKI---SPDLKLAFFTLRQEEKHAALLYM 258 (786)
Q Consensus 183 ~gf~~~l~~Il~~l~-~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~---~~~l~~~~~~v~~~~k~~~Ll~l 258 (786)
......+..++..+. .+..+|++|||+|+.+.+.+...+.....+........ .+.+.......-.......+...
T Consensus 353 ~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 432 (733)
T COG1203 353 ETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIEL 432 (733)
T ss_pred cchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhc
Confidence 633333344443332 47889999999999999988887766554443322100 00111100000000000234555
Q ss_pred HHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHh----cCCcEEEEEecccccccCCCC
Q 003924 259 IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR----ARKTMFLIVTDVAARGIDIPL 334 (786)
Q Consensus 259 L~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~----~g~~~ILVaTdv~arGlDIp~ 334 (786)
+......+.+++|.|||+..|..++..|+..+..+..+||.+...+|...+.... .+...|+|+|+|++.|+||.
T Consensus 433 ~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid- 511 (733)
T COG1203 433 ISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID- 511 (733)
T ss_pred chhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-
Confidence 5556678899999999999999999999998888999999999999988777544 56789999999999999995
Q ss_pred cceeEecCCCCCHhHHHHHhhccccCC--CccEEEEEEecccHHHHHH
Q 003924 335 LDNVINWDFPPKPKIFVHRVGRAARAG--RTGTAFSFVTSEDMAYLLD 380 (786)
Q Consensus 335 v~~VI~~d~P~s~~~~vQRvGR~gR~G--~~G~ai~lv~~~e~~~l~~ 380 (786)
.+++|-= +...+.++||+||++|-| ..|.++++......++..+
T Consensus 512 fd~mITe--~aPidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~ 557 (733)
T COG1203 512 FDVLITE--LAPIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKY 557 (733)
T ss_pred cCeeeec--CCCHHHHHHHHHHHhhcccccCCceeEeecccCCCchhh
Confidence 6777732 556899999999999999 5678887777665544433
No 102
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.91 E-value=5.6e-23 Score=234.74 Aligned_cols=320 Identities=20% Similarity=0.252 Sum_probs=227.9
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.+| .|-++|++||-++..|..|++.|+|.+|||+++-.++.-. .. .+.|++|-+|-.+|-.|-++.|++-..
T Consensus 294 ~pF-elD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala-q~----h~TR~iYTSPIKALSNQKfRDFk~tF~-- 365 (1248)
T KOG0947|consen 294 YPF-ELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA-QK----HMTRTIYTSPIKALSNQKFRDFKETFG-- 365 (1248)
T ss_pred CCC-CccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH-Hh----hccceEecchhhhhccchHHHHHHhcc--
Confidence 366 7899999999999999999999999999998865544322 12 477899999999999998887776332
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCC
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~ 200 (786)
.+.+++|... +...+..+|+|.+.|..++.+..++ +.+++.|||||+|-+.+....--+.+++-.+|...
T Consensus 366 --DvgLlTGDvq-------inPeAsCLIMTTEILRsMLYrgadl-iRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV 435 (1248)
T KOG0947|consen 366 --DVGLLTGDVQ-------INPEASCLIMTTEILRSMLYRGADL-IRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHV 435 (1248)
T ss_pred --ccceeeccee-------eCCCcceEeehHHHHHHHHhcccch-hhccceEEEeeeeecccccccccceeeeeeccccc
Confidence 2336666543 4456889999999999999884333 78899999999999998888888999999999999
Q ss_pred ceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecc---------------------------------
Q 003924 201 QTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR--------------------------------- 247 (786)
Q Consensus 201 q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~--------------------------------- 247 (786)
++|++|||.|+.++---+.+-..-..|.+....+-+-.+++.+++-.
T Consensus 436 ~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~ 515 (1248)
T KOG0947|consen 436 NFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDV 515 (1248)
T ss_pred eEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccc
Confidence 99999999998754322222211111111111111111111111100
Q ss_pred -------------------------------h-HHH---HHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcC--
Q 003924 248 -------------------------------Q-EEK---HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG-- 290 (786)
Q Consensus 248 -------------------------------~-~~k---~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g-- 290 (786)
. ..+ ...|+..|.. ..--++||||-++..|+..+.+|....
T Consensus 516 ~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k--~~lLP~VvFvFSkkrCde~a~~L~~~nL~ 593 (1248)
T KOG0947|consen 516 EKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRK--KNLLPVVVFVFSKKRCDEYADYLTNLNLT 593 (1248)
T ss_pred ccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhh--cccCceEEEEEccccHHHHHHHHhccCcc
Confidence 0 001 2223333332 134589999999999999988887531
Q ss_pred -------------------------------------CCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCC
Q 003924 291 -------------------------------------LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (786)
Q Consensus 291 -------------------------------------~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp 333 (786)
-.++++||++-+--.+.+.-.|..|-+.||+||-+.|.|+|.|
T Consensus 594 ~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMP 673 (1248)
T KOG0947|consen 594 DSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMP 673 (1248)
T ss_pred cchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCC
Confidence 2267799999999999999999999999999999999999999
Q ss_pred CcceeEecCC---------CCCHhHHHHHhhccccCCC--ccEEEEEEecccHHHHHHHH
Q 003924 334 LLDNVINWDF---------PPKPKIFVHRVGRAARAGR--TGTAFSFVTSEDMAYLLDLH 382 (786)
Q Consensus 334 ~v~~VI~~d~---------P~s~~~~vQRvGR~gR~G~--~G~ai~lv~~~e~~~l~~l~ 382 (786)
.-.+|+ -.+ --.|-.|.|++||+||.|- .|+++++.... .+-..+++
T Consensus 674 ARtvVF-~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~-vp~~a~l~ 731 (1248)
T KOG0947|consen 674 ARTVVF-SSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS-VPSAATLK 731 (1248)
T ss_pred ceeEEe-eehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCC-CCCHHHHh
Confidence 755555 222 1357899999999999985 47766655443 34444443
No 103
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=1e-22 Score=241.60 Aligned_cols=318 Identities=20% Similarity=0.276 Sum_probs=232.9
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-
Q 003924 36 RAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK- 114 (786)
Q Consensus 36 ~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~- 114 (786)
......|| .|-|+|++++..|..|..|+++||||||||.+.-.++...+.. +.+++|.+|..+|..|.+..+.
T Consensus 111 ~~~~~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~-----~qrviYTsPIKALsNQKyrdl~~ 184 (1041)
T COG4581 111 PPAREYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD-----GQRVIYTSPIKALSNQKYRDLLA 184 (1041)
T ss_pred cHHHhCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc-----CCceEeccchhhhhhhHHHHHHH
Confidence 33455688 8999999999999999999999999999999887777666554 5569999999999999997665
Q ss_pred HHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHh
Q 003924 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (786)
Q Consensus 115 ~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~ 194 (786)
.|+.. .-.+++++|..+ +...+.++|+|.+.|..++.. +...+..+..|||||+|.+.+.....-+.+++-
T Consensus 185 ~fgdv-~~~vGL~TGDv~-------IN~~A~clvMTTEILRnMlyr-g~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii 255 (1041)
T COG4581 185 KFGDV-ADMVGLMTGDVS-------INPDAPCLVMTTEILRNMLYR-GSESLRDIEWVVFDEVHYIGDRERGVVWEEVII 255 (1041)
T ss_pred Hhhhh-hhhccceeccee-------eCCCCceEEeeHHHHHHHhcc-CcccccccceEEEEeeeeccccccchhHHHHHH
Confidence 45533 223566676554 345688999999999998887 356789999999999999999988899999999
Q ss_pred hcccCCceEEEeccCcHHHH--HHHHhcCCCCcceeeccccccCCCceeeeee-------cchHHH--------------
Q 003924 195 QLSENRQTLLFSATLPSALA--EFAKAGLRDPHLVRLDVDTKISPDLKLAFFT-------LRQEEK-------------- 251 (786)
Q Consensus 195 ~l~~~~q~ll~SATl~~~l~--~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~-------v~~~~k-------------- 251 (786)
.+|...++++||||+|+..+ .++...-..|..+ +..+....| +.+.++. +....+
T Consensus 256 ~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~v-v~t~~RpvP-L~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~ 333 (1041)
T COG4581 256 LLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHV-VSTEHRPVP-LEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLS 333 (1041)
T ss_pred hcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEE-EeecCCCCC-eEEEEecCCceeeeecccccchhhcchhhhhhhh
Confidence 99999999999999987643 3333222233222 222222222 2221111 111000
Q ss_pred ---------------------------------HHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc---------
Q 003924 252 ---------------------------------HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--------- 289 (786)
Q Consensus 252 ---------------------------------~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~--------- 289 (786)
...++..+.. ...-++|+|+-++..|+.++..+...
T Consensus 334 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~--~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e 411 (1041)
T COG4581 334 CFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK--DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKE 411 (1041)
T ss_pred ccchhccccCccccccccccccccCCcccccccchHHHhhhhh--hcCCceEEEEEchhhHHHHHHHhcccccccCCcHH
Confidence 0112222221 23458999999999998776666521
Q ss_pred -------------------CC-------------CceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcce
Q 003924 290 -------------------GL-------------EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (786)
Q Consensus 290 -------------------g~-------------~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~ 337 (786)
++ .+.++|++|=+..+..+...|..|-+.||++|.+.+.|+|.|.-++
T Consensus 412 ~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartv 491 (1041)
T COG4581 412 RAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTV 491 (1041)
T ss_pred HHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccce
Confidence 12 1447899999999999999999999999999999999999997655
Q ss_pred eEecC---------CCCCHhHHHHHhhccccCCCc--cEEEEEEecc
Q 003924 338 VINWD---------FPPKPKIFVHRVGRAARAGRT--GTAFSFVTSE 373 (786)
Q Consensus 338 VI~~d---------~P~s~~~~vQRvGR~gR~G~~--G~ai~lv~~~ 373 (786)
|+ +. .+.++..|.|..||+||.|-. |.+++...+.
T Consensus 492 v~-~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 492 VF-TSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred ee-eeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCC
Confidence 55 22 345789999999999999874 7777775554
No 104
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.90 E-value=3.9e-23 Score=238.05 Aligned_cols=339 Identities=19% Similarity=0.220 Sum_probs=246.1
Q ss_pred HHHHHHCCCCCChHHHHHHH--HHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 003924 35 FRAIKRKGYKVPTPIQRKTM--PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (786)
Q Consensus 35 l~~l~~~g~~~ptpiQ~~ai--p~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~ 112 (786)
.-.....|...+..+|..|+ |.++.+++.|..+||+.|||++.-+.|+..+... ...++.+.|....+..-...
T Consensus 213 ~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~----rr~~llilp~vsiv~Ek~~~ 288 (1008)
T KOG0950|consen 213 HLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR----RRNVLLILPYVSIVQEKISA 288 (1008)
T ss_pred HHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH----hhceeEecceeehhHHHHhh
Confidence 33344578889999999998 7788999999999999999999999988877654 34588999988888777778
Q ss_pred HHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhh-ccCCCCCceeeEEeCCccccccCChHHHHHH
Q 003924 113 TKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-VEDMSLKSVEYVVFDEADCLFGMGFAEQLHK 191 (786)
Q Consensus 113 l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~-~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~ 191 (786)
+..|+...|+.+....|+......+ ..-.|.|||.++-..++.. ...-.+..+++||+||.|.+.+.+....+..
T Consensus 289 l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~ 364 (1008)
T KOG0950|consen 289 LSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILEL 364 (1008)
T ss_pred hhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHH
Confidence 8888888899998888776655443 3467999999976555443 1123477889999999999999888888887
Q ss_pred HHhhc-----ccCCceEEEeccCcHH--HHHHHHhcCC--CCcceeeccccccCCCceee------------eeecchHH
Q 003924 192 ILGQL-----SENRQTLLFSATLPSA--LAEFAKAGLR--DPHLVRLDVDTKISPDLKLA------------FFTLRQEE 250 (786)
Q Consensus 192 Il~~l-----~~~~q~ll~SATl~~~--l~~~~~~~l~--~p~~i~~~~~~~~~~~l~~~------------~~~v~~~~ 250 (786)
++..+ ....|+|+||||+|+. +..+..+.+- +..-+.+.........+... +.......
T Consensus 365 ~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~ 444 (1008)
T KOG0950|consen 365 LLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDE 444 (1008)
T ss_pred HHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccC
Confidence 77654 2346799999999863 3344443221 11111111111111100000 00000111
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc--------------------------------------CCC
Q 003924 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--------------------------------------GLE 292 (786)
Q Consensus 251 k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~--------------------------------------g~~ 292 (786)
..+.+..++.+.+..+.++||||+++..|+.++..+... .+.
T Consensus 445 dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~G 524 (1008)
T KOG0950|consen 445 DPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYG 524 (1008)
T ss_pred CCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheecccc
Confidence 124556667777778888999999999999776544320 245
Q ss_pred ceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEec---CC-CCCHhHHHHHhhccccCCC--ccEE
Q 003924 293 PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINW---DF-PPKPKIFVHRVGRAARAGR--TGTA 366 (786)
Q Consensus 293 v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~---d~-P~s~~~~vQRvGR~gR~G~--~G~a 366 (786)
++++|.++..++|+.+...|+.|...||+||+.++.|+|+|...++|-. +. +.+.-.|.|++|||||+|- .|.+
T Consensus 525 vAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~Gds 604 (1008)
T KOG0950|consen 525 VAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDS 604 (1008)
T ss_pred ceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcce
Confidence 7899999999999999999999999999999999999999988877732 22 2456689999999999975 5999
Q ss_pred EEEEecccHHHHHHH
Q 003924 367 FSFVTSEDMAYLLDL 381 (786)
Q Consensus 367 i~lv~~~e~~~l~~l 381 (786)
++++.+.|...+..+
T Consensus 605 iLI~k~~e~~~~~~l 619 (1008)
T KOG0950|consen 605 ILIIKSSEKKRVREL 619 (1008)
T ss_pred EEEeeccchhHHHHH
Confidence 999999987665543
No 105
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.90 E-value=3.8e-22 Score=223.51 Aligned_cols=360 Identities=16% Similarity=0.217 Sum_probs=238.5
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHH-HHHHccCCCCeEEE
Q 003924 48 PIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF-TKELGRYTDLRISL 126 (786)
Q Consensus 48 piQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~-l~~l~~~~~l~v~~ 126 (786)
.+-.+.+..+..++-+|+.|+||||||. .+|-+ |.+.......++.+--|.|--|..+++. ..+.+...|-.|+.
T Consensus 54 ~~r~~il~~ve~nqvlIviGeTGsGKST--QipQy--L~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 54 KYRDQILYAVEDNQVLIVIGETGSGKST--QIPQY--LAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred HHHHHHHHHHHHCCEEEEEcCCCCCccc--cHhHH--HHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 3344566667778889999999999998 44433 2222111222367777999988888864 45666555555555
Q ss_pred EEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc-cCCh-HHHHHHHHhhcccCCceEE
Q 003924 127 LVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGF-AEQLHKILGQLSENRQTLL 204 (786)
Q Consensus 127 l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~-~~gf-~~~l~~Il~~l~~~~q~ll 204 (786)
.+.-++.. .....|.+.|.|.|+..+.. +..++.+++||+||||.-. .... ...|..|+.. .+..++|+
T Consensus 130 ~IRFed~t------s~~TrikymTDG~LLRE~l~--Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~-R~~LklIi 200 (674)
T KOG0922|consen 130 TIRFEDST------SKDTRIKYMTDGMLLREILK--DPLLSKYSVIILDEAHERSLHTDILLGLLKKILKK-RPDLKLII 200 (674)
T ss_pred EEEecccC------CCceeEEEecchHHHHHHhc--CCccccccEEEEechhhhhhHHHHHHHHHHHHHhc-CCCceEEE
Confidence 54422221 23467999999999998875 6678999999999999632 1111 1122223222 34678999
Q ss_pred EeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHh--ccCCCcEEEEEcchhhHHHH
Q 003924 205 FSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH--ISSDQQTLIFVSTKHHVEFL 282 (786)
Q Consensus 205 ~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~--~~~~~k~IVF~~t~~~ae~l 282 (786)
+|||+..+ ....++.+..++.+.... -.+++.|..-+..+..++.+..+.+. -++.+.+|||....++++.+
T Consensus 201 mSATlda~---kfS~yF~~a~i~~i~GR~---fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~ 274 (674)
T KOG0922|consen 201 MSATLDAE---KFSEYFNNAPILTIPGRT---FPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAA 274 (674)
T ss_pred EeeeecHH---HHHHHhcCCceEeecCCC---CceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHH
Confidence 99999754 555666665555444332 23445555444445554444433331 24567899999999999999
Q ss_pred HHHHHHc----CC----CceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCC-----------
Q 003924 283 NVLFREE----GL----EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF----------- 343 (786)
Q Consensus 283 ~~~L~~~----g~----~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~----------- 343 (786)
++.|.+. +- -+..+||.|+.+++..++..-..|..+|+++|++++..|-||++.+||+-++
T Consensus 275 ~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g 354 (674)
T KOG0922|consen 275 CELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTG 354 (674)
T ss_pred HHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccC
Confidence 9999864 11 2467999999999999988888899999999999999999999999996443
Q ss_pred -------CCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCCCHHHHHhhhhhHHHHHHHHHhcC
Q 003924 344 -------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANG 416 (786)
Q Consensus 344 -------P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~e~~~~~~~~~~~~i~~~~~~~ 416 (786)
|.|-..-.||.||+||.| +|.||-+++..++..+. ..+.+|....++......+...-.++
T Consensus 355 ~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~~~-----------~~~~PEI~R~~Ls~~vL~Lkalgi~d 422 (674)
T KOG0922|consen 355 LDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDKMP-----------LQTVPEIQRVNLSSAVLQLKALGIND 422 (674)
T ss_pred ccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhhcc-----------cCCCCceeeechHHHHHHHHhcCCCC
Confidence 567788899999999985 79999999988663222 22233333344455554554443344
Q ss_pred CccccccchhHHHHHHHHHHHH
Q 003924 417 ETIYGRFPQTVIDLVSDRVREI 438 (786)
Q Consensus 417 ~~~~g~~~~~~~~~~~~~~~~l 438 (786)
..-|..+..+..+.....++.|
T Consensus 423 ~l~F~f~d~P~~~~l~~AL~~L 444 (674)
T KOG0922|consen 423 PLRFPFIDPPPPEALEEALEEL 444 (674)
T ss_pred cccCCCCCCCChHHHHHHHHHH
Confidence 4344444444444444444443
No 106
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=5.9e-22 Score=219.31 Aligned_cols=311 Identities=18% Similarity=0.237 Sum_probs=222.7
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHH-HHHHHccCCCCe
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTDLR 123 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~-~l~~l~~~~~l~ 123 (786)
..+++-.+.+.++..++-++++|.||||||. .+|-+-.-. .....|.++-+--|.|.-|..++. +.++++-..|-.
T Consensus 265 PVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~Ea-Gytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~e 341 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEA-GYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHE 341 (902)
T ss_pred CchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhc-ccccCCceEeecCcchHHHHHHHHHHHHHhCcccccc
Confidence 3455666777777888889999999999998 555432211 122345556666799999998875 445555444333
Q ss_pred EEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccc-cccCChHHHHHHHHhhcccCCce
Q 003924 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC-LFGMGFAEQLHKILGQLSENRQT 202 (786)
Q Consensus 124 v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~-l~~~gf~~~l~~Il~~l~~~~q~ 202 (786)
|+.-+.-.+. -....-|-++|.|.|+..+.. ..+|.++++|||||||. .+.....-.|..-+..+.+...+
T Consensus 342 VGYsIRFEdc------TSekTvlKYMTDGmLlREfL~--epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKl 413 (902)
T KOG0923|consen 342 VGYSIRFEDC------TSEKTVLKYMTDGMLLREFLS--EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKL 413 (902)
T ss_pred cceEEEeccc------cCcceeeeeecchhHHHHHhc--cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceE
Confidence 3332221111 112355779999999988875 68899999999999994 33333333333334455678899
Q ss_pred EEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHh--ccCCCcEEEEEcchhhHH
Q 003924 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH--ISSDQQTLIFVSTKHHVE 280 (786)
Q Consensus 203 ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~--~~~~~k~IVF~~t~~~ae 280 (786)
|+.|||+... -..+++.+..++++..... .+...|...+..+.+++.+..+.+. -.+.+.+|||....+..+
T Consensus 414 lIsSAT~DAe---kFS~fFDdapIF~iPGRRy---PVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIE 487 (902)
T KOG0923|consen 414 LISSATMDAE---KFSAFFDDAPIFRIPGRRY---PVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIE 487 (902)
T ss_pred EeeccccCHH---HHHHhccCCcEEeccCccc---ceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHH
Confidence 9999998754 4566777776666654332 3445566666666666665555432 245678999999998888
Q ss_pred HHHHHHHHc----C-----CCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCC--------
Q 003924 281 FLNVLFREE----G-----LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF-------- 343 (786)
Q Consensus 281 ~l~~~L~~~----g-----~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~-------- 343 (786)
...+.|... | +-+..||+.|+.+.+..+++.-..|-..|++||++|+..|.|+++.+||+-++
T Consensus 488 t~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynp 567 (902)
T KOG0923|consen 488 TVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNP 567 (902)
T ss_pred HHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCC
Confidence 777766542 2 44778999999999999988888899999999999999999999999996553
Q ss_pred ----------CCCHhHHHHHhhccccCCCccEEEEEEecc
Q 003924 344 ----------PPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (786)
Q Consensus 344 ----------P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~ 373 (786)
|.|-..-.||.||+||.| +|.||-+++..
T Consensus 568 rtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 568 RTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred CcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 456677899999999987 79999999964
No 107
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=8.3e-21 Score=223.26 Aligned_cols=128 Identities=24% Similarity=0.307 Sum_probs=116.4
Q ss_pred cchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc
Q 003924 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (786)
Q Consensus 246 v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv 325 (786)
....+|..+|...+......+.++||||+|+..++.++..|...++++..||+ .+.+|+..+..|..+...|+|||++
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNM 655 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNM 655 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccC
Confidence 33457899999999877677899999999999999999999999999999997 6889999999999999999999999
Q ss_pred cccccCCCC---cc-----eeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccH
Q 003924 326 AARGIDIPL---LD-----NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (786)
Q Consensus 326 ~arGlDIp~---v~-----~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~ 375 (786)
|+||+||+. |. +||+++.|.+...|.||+||+||+|.+|.++.|++.+|.
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 999999993 43 458999999999999999999999999999999998763
No 108
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.88 E-value=1.9e-20 Score=220.16 Aligned_cols=132 Identities=20% Similarity=0.304 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeccccc
Q 003924 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (786)
Q Consensus 249 ~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~ar 328 (786)
......|+..|......+.++||||+|+..++.++..|...|+.+.++||++++.+|..++..|+.|++.|||||+++++
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~r 504 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLRE 504 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcC
Confidence 45667888888887778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceeEecC-----CCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHH
Q 003924 329 GIDIPLLDNVINWD-----FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (786)
Q Consensus 329 GlDIp~v~~VI~~d-----~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (786)
|+|+|.+++||++| +|.+...|+||+||+||. ..|.+++|++..+......+
T Consensus 505 GfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 505 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred CeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 99999999999988 899999999999999998 68999999998765444433
No 109
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.88 E-value=6.1e-20 Score=224.23 Aligned_cols=335 Identities=21% Similarity=0.240 Sum_probs=212.6
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHH----HHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHH
Q 003924 30 LSPNVFRAIKRKGYKVPTPIQRKTMP----LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (786)
Q Consensus 30 Ls~~ll~~l~~~g~~~ptpiQ~~aip----~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreL 105 (786)
+++.+...+...|| .++|.|.+.+. .+..++++++.||||+|||++|++|++..+. .+.++||.+||++|
T Consensus 231 ~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-----~~~~vvi~t~t~~L 304 (850)
T TIGR01407 231 LSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-----TEKPVVISTNTKVL 304 (850)
T ss_pred ccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-----CCCeEEEEeCcHHH
Confidence 44567788888999 48999998666 4556789999999999999999999987655 24589999999999
Q ss_pred HHHHHH-HHHHHccCCC--CeEEEEEcCCChh-----------------H-H----------------------------
Q 003924 106 ALQTLK-FTKELGRYTD--LRISLLVGGDSME-----------------S-Q---------------------------- 136 (786)
Q Consensus 106 a~Q~~~-~l~~l~~~~~--l~v~~l~gg~~~~-----------------~-~---------------------------- 136 (786)
..|+.. .+..+.+..+ ++++++.|+..+- . .
T Consensus 305 q~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~ 384 (850)
T TIGR01407 305 QSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKM 384 (850)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchh
Confidence 999865 5665655444 7777777653220 0 0
Q ss_pred -H------------------------HHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccC-------C
Q 003924 137 -F------------------------EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-------G 184 (786)
Q Consensus 137 -~------------------------~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~-------g 184 (786)
+ ......++|||+++.-|++.+.... ..+....++||||||++.+. .
T Consensus 385 ~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~-~ilp~~~~lIiDEAH~L~d~a~~~~~~~ 463 (850)
T TIGR01407 385 FFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNP-ELFPSFRDLIIDEAHHLPDIAENQLQEE 463 (850)
T ss_pred hHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccc-ccCCCCCEEEEECcchHHHHHHHHhcce
Confidence 0 0112246899999998888775422 22455679999999987521 0
Q ss_pred h-----HH----------------------------------------------------------------HHHHHHhh
Q 003924 185 F-----AE----------------------------------------------------------------QLHKILGQ 195 (786)
Q Consensus 185 f-----~~----------------------------------------------------------------~l~~Il~~ 195 (786)
+ .. .+...+..
T Consensus 464 ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~ 543 (850)
T TIGR01407 464 LDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLA 543 (850)
T ss_pred eCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 0 00 00000000
Q ss_pred --------------------------------c----------------ccCCceEEEeccCcH--HHHHHHH-hcCCCC
Q 003924 196 --------------------------------L----------------SENRQTLLFSATLPS--ALAEFAK-AGLRDP 224 (786)
Q Consensus 196 --------------------------------l----------------~~~~q~ll~SATl~~--~l~~~~~-~~l~~p 224 (786)
+ +....+|++|||++. ....+.. .++.+.
T Consensus 544 ~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~ 623 (850)
T TIGR01407 544 LKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDV 623 (850)
T ss_pred HHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCcc
Confidence 0 112367899999963 2333332 344333
Q ss_pred cceeeccccccC--CCceeeee-------ecchHHHHHHHHHHHHHhcc-CCCcEEEEEcchhhHHHHHHHHHHcC--CC
Q 003924 225 HLVRLDVDTKIS--PDLKLAFF-------TLRQEEKHAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEG--LE 292 (786)
Q Consensus 225 ~~i~~~~~~~~~--~~l~~~~~-------~v~~~~k~~~Ll~lL~~~~~-~~~k~IVF~~t~~~ae~l~~~L~~~g--~~ 292 (786)
....+. .+... .+...... ..........+...|.+... ..+++||||++....+.++..|.... ..
T Consensus 624 ~~~~~~-~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~ 702 (850)
T TIGR01407 624 HFNTIE-PTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFEG 702 (850)
T ss_pred ccceec-CCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhccccC
Confidence 322221 11111 11111110 01123334455555544332 45789999999999999999987521 11
Q ss_pred ceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcc--eeEecCCCCC----H-------------------
Q 003924 293 PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD--NVINWDFPPK----P------------------- 347 (786)
Q Consensus 293 v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~--~VI~~d~P~s----~------------------- 347 (786)
..++..+.. ..|..+++.|+.++..||++|+.+++|||+|+.. +||...+|.. +
T Consensus 703 ~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~ 781 (850)
T TIGR01407 703 YEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYD 781 (850)
T ss_pred ceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHH
Confidence 222333333 4688899999999999999999999999999754 5666666621 1
Q ss_pred -------hHHHHHhhccccCCCccEEEEEEecc
Q 003924 348 -------KIFVHRVGRAARAGRTGTAFSFVTSE 373 (786)
Q Consensus 348 -------~~~vQRvGR~gR~G~~G~ai~lv~~~ 373 (786)
..+.|.+||+-|.....-++++++..
T Consensus 782 ~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~R 814 (850)
T TIGR01407 782 YVLPMAIIRLRQALGRLIRRENDRGSIVILDRR 814 (850)
T ss_pred hhHHHHHHHHHHhhccccccCCceEEEEEEccc
Confidence 22589999999987654456666654
No 110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.87 E-value=3.5e-20 Score=214.69 Aligned_cols=280 Identities=20% Similarity=0.311 Sum_probs=194.0
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.|| .||..|+-....++.|+++-+.||||.|||.- .+.+--.+.. .|.+++||+||..|+.|+++.+..|+...
T Consensus 79 ~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTf-g~~~sl~~a~----kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~ 152 (1187)
T COG1110 79 TGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTF-GLLMSLYLAK----KGKRVYIIVPTTTLVRQVYERLKKFAEDA 152 (1187)
T ss_pred hCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHH-HHHHHHHHHh----cCCeEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 366 99999999999999999999999999999964 3333323333 47899999999999999999999998766
Q ss_pred C-CeEEEEEcCC-ChhH---HHHHH-cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccC-----------
Q 003924 121 D-LRISLLVGGD-SMES---QFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM----------- 183 (786)
Q Consensus 121 ~-l~v~~l~gg~-~~~~---~~~~l-~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~----------- 183 (786)
+ +.+..++.+. +..+ ..+.+ .++.||+|+|...|.+..... .--++++|++|.+|.++-.
T Consensus 153 ~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L---~~~kFdfifVDDVDA~LkaskNvDriL~Ll 229 (1187)
T COG1110 153 GSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL---SKLKFDFIFVDDVDAILKASKNVDRLLRLL 229 (1187)
T ss_pred CCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh---cccCCCEEEEccHHHHHhccccHHHHHHHc
Confidence 5 5555534443 3222 22333 358999999999887776653 2246789999999976632
Q ss_pred ChHHH-----------------------HHHHHhhc--------ccCCceEEEeccCcHH--HHHHHHhcCCCCcceeec
Q 003924 184 GFAEQ-----------------------LHKILGQL--------SENRQTLLFSATLPSA--LAEFAKAGLRDPHLVRLD 230 (786)
Q Consensus 184 gf~~~-----------------------l~~Il~~l--------~~~~q~ll~SATl~~~--l~~~~~~~l~~p~~i~~~ 230 (786)
||.+. +.+++... ....+++..|||..+. -..+.+..|+- .+.
T Consensus 230 Gf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgF----evG 305 (1187)
T COG1110 230 GFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGF----EVG 305 (1187)
T ss_pred CCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCC----ccC
Confidence 33221 11111111 1235789999997432 12233333321 111
Q ss_pred cccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcc---hhhHHHHHHHHHHcCCCceeecCCCCHHHHHH
Q 003924 231 VDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVST---KHHVEFLNVLFREEGLEPSVCYGDMDQDARKI 307 (786)
Q Consensus 231 ~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t---~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~ 307 (786)
.......++...|... .-...++.+++.. +...|||++. ++.++++++.|+..|+.+..+|+. ...
T Consensus 306 ~~~~~LRNIvD~y~~~---~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~~ 374 (1187)
T COG1110 306 SGGEGLRNIVDIYVES---ESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KEE 374 (1187)
T ss_pred ccchhhhheeeeeccC---ccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----chh
Confidence 1111122333333333 3344455566554 5579999999 999999999999999999999873 256
Q ss_pred HHHHHhcCCcEEEEEe----cccccccCCC-CcceeEecCCC
Q 003924 308 HVSRFRARKTMFLIVT----DVAARGIDIP-LLDNVINWDFP 344 (786)
Q Consensus 308 ~l~~F~~g~~~ILVaT----dv~arGlDIp-~v~~VI~~d~P 344 (786)
.++.|..|+++|||++ .++.||||+| .+.++|+|+.|
T Consensus 375 ~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 375 ALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 8999999999999975 6799999999 58899998877
No 111
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.87 E-value=4.9e-22 Score=222.20 Aligned_cols=309 Identities=18% Similarity=0.258 Sum_probs=226.5
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-HHccCCCCe
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-ELGRYTDLR 123 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~-~l~~~~~l~ 123 (786)
.+-|+|..+|..|-.+..|++.|.|.+|||.++-.++...|.. ..|++|-+|-.+|-.|-++++. +|+ .
T Consensus 129 ~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~-----kQRVIYTSPIKALSNQKYREl~~EF~-----D 198 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLRE-----KQRVIYTSPIKALSNQKYRELLEEFK-----D 198 (1041)
T ss_pred ccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHh-----cCeEEeeChhhhhcchhHHHHHHHhc-----c
Confidence 6789999999999999999999999999999988888877765 4589999999999999988665 454 5
Q ss_pred EEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceE
Q 003924 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (786)
Q Consensus 124 v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~l 203 (786)
|++++|..+ +...+.-+|+|.+.|..++.+. .--+..+..|||||+|-|-+....--+.+-+-.+|.+.+.+
T Consensus 199 VGLMTGDVT-------InP~ASCLVMTTEILRsMLYRG-SEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~V 270 (1041)
T KOG0948|consen 199 VGLMTGDVT-------INPDASCLVMTTEILRSMLYRG-SEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFV 270 (1041)
T ss_pred cceeeccee-------eCCCCceeeeHHHHHHHHHhcc-chHhheeeeEEeeeehhccccccceeeeeeEEeccccceEE
Confidence 666777654 3345778999999999998873 44578899999999999987766666777777889999999
Q ss_pred EEeccCcHHHH--HHHHhcCCCCcceeeccccccCCCceeeee---------ecchH-----HHHH--------------
Q 003924 204 LFSATLPSALA--EFAKAGLRDPHLVRLDVDTKISPDLKLAFF---------TLRQE-----EKHA-------------- 253 (786)
Q Consensus 204 l~SATl~~~l~--~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~---------~v~~~-----~k~~-------------- 253 (786)
++|||+|+... +|+...-..|.-+.... .-+..++++.+ .++.. +...
T Consensus 271 FLSATiPNA~qFAeWI~~ihkQPcHVVYTd--yRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~ 348 (1041)
T KOG0948|consen 271 FLSATIPNARQFAEWICHIHKQPCHVVYTD--YRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDG 348 (1041)
T ss_pred EEeccCCCHHHHHHHHHHHhcCCceEEeec--CCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcc
Confidence 99999998643 34444444554332221 11222333322 22211 1111
Q ss_pred ---------------------HHHHHHHHhc-cCCCcEEEEEcchhhHHHHHHHHHHc----------------------
Q 003924 254 ---------------------ALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREE---------------------- 289 (786)
Q Consensus 254 ---------------------~Ll~lL~~~~-~~~~k~IVF~~t~~~ae~l~~~L~~~---------------------- 289 (786)
.+..+++... ....++|||+-++..||.++-.+.+.
T Consensus 349 ~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 349 KKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred ccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 1222222211 13568999999999999877666542
Q ss_pred -----------------CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEe----cC---CC-
Q 003924 290 -----------------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD---FP- 344 (786)
Q Consensus 290 -----------------g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~----~d---~P- 344 (786)
...+.++||+|-+--.+.+.-.|..|-+.+|+||-+.+.|||.|.-++|+- || +.
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRw 508 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRW 508 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceee
Confidence 123678999999998888888999999999999999999999997655551 11 11
Q ss_pred CCHhHHHHHhhccccCCC--ccEEEEEEecc
Q 003924 345 PKPKIFVHRVGRAARAGR--TGTAFSFVTSE 373 (786)
Q Consensus 345 ~s~~~~vQRvGR~gR~G~--~G~ai~lv~~~ 373 (786)
.+.-.|+|+.||+||.|- .|.||++++..
T Consensus 509 issGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 509 ISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ecccceEEecccccccCCCCCceEEEEecCc
Confidence 255689999999999986 47888887764
No 112
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=3e-20 Score=199.77 Aligned_cols=382 Identities=16% Similarity=0.193 Sum_probs=266.9
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P 101 (786)
.++|...+.|+...+.|++.---..|..+.+.+..+..++-+++.|.||||||.-.--+.++....+. ..+..--|
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----~~v~CTQp 99 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----TGVACTQP 99 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----cceeecCc
Confidence 88999999999999999987666678888888888889999999999999999854444444444431 23455559
Q ss_pred cHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcC-CCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccc
Q 003924 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ-NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (786)
Q Consensus 102 treLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~-~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l 180 (786)
.|.-|.+++....+ ..++..+--+|-.- .|+.-.. +.-.-+||.|.|+..... +..+..+++||+||||.-
T Consensus 100 rrvaamsva~RVad---EMDv~lG~EVGysI---rfEdC~~~~T~Lky~tDgmLlrEams--~p~l~~y~viiLDeahER 171 (699)
T KOG0925|consen 100 RRVAAMSVAQRVAD---EMDVTLGEEVGYSI---RFEDCTSPNTLLKYCTDGMLLREAMS--DPLLGRYGVIILDEAHER 171 (699)
T ss_pred hHHHHHHHHHHHHH---Hhccccchhccccc---cccccCChhHHHHHhcchHHHHHHhh--CcccccccEEEechhhhh
Confidence 99888887754322 22233322222110 0110000 111236888888776654 566899999999999963
Q ss_pred c-cCC-hHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHH
Q 003924 181 F-GMG-FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYM 258 (786)
Q Consensus 181 ~-~~g-f~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~l 258 (786)
. ... ..-.+.+++..- +..++|.+|||+... -...++.++.++.+.. ...++..|..-...+..++.+..
T Consensus 172 tlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~---Kfq~yf~n~Pll~vpg----~~PvEi~Yt~e~erDylEaairt 243 (699)
T KOG0925|consen 172 TLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE---KFQRYFGNAPLLAVPG----THPVEIFYTPEPERDYLEAAIRT 243 (699)
T ss_pred hHHHHHHHHHHHHHHhhC-CCceEEEeecccchH---HHHHHhCCCCeeecCC----CCceEEEecCCCChhHHHHHHHH
Confidence 2 111 122334444444 488999999998543 5667788888887764 23345555555556666666655
Q ss_pred HHHh--ccCCCcEEEEEcchhhHHHHHHHHHHc---------CCCceeecCCCCHHHHHHHHHHHh---cC--CcEEEEE
Q 003924 259 IREH--ISSDQQTLIFVSTKHHVEFLNVLFREE---------GLEPSVCYGDMDQDARKIHVSRFR---AR--KTMFLIV 322 (786)
Q Consensus 259 L~~~--~~~~~k~IVF~~t~~~ae~l~~~L~~~---------g~~v~~lhg~l~q~~R~~~l~~F~---~g--~~~ILVa 322 (786)
+.+. .+..+.+|||....+..+..++.+... .+.|..+|- .+...+++.-. +| ..+|+|+
T Consensus 244 V~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP----~~qq~iFep~p~~~~~~~~RkvVvs 319 (699)
T KOG0925|consen 244 VLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLYP----AQQQRIFEPAPEKRNGAYGRKVVVS 319 (699)
T ss_pred HHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecCc----hhhccccCCCCcccCCCccceEEEE
Confidence 5442 245678999999999988888777632 256777882 22222222111 12 4579999
Q ss_pred ecccccccCCCCcceeEecCC------------------CCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHH
Q 003924 323 TDVAARGIDIPLLDNVINWDF------------------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLF 384 (786)
Q Consensus 323 Tdv~arGlDIp~v~~VI~~d~------------------P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~ 384 (786)
|.+++..+-|+++.+||+-++ |.|-..-.||.||+||. ++|.|+.++++. +
T Consensus 320 tniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~----------~ 388 (699)
T KOG0925|consen 320 TNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE----------A 388 (699)
T ss_pred ecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH----------h
Confidence 999999999999999996553 56777789999999996 789999999976 6
Q ss_pred hcCCCCCCCCHHHHHhhhhhHHHHHHHHHhcCCccccccchhHHHHHHHHHHHH
Q 003924 385 LSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVIDLVSDRVREI 438 (786)
Q Consensus 385 l~~~~~~~p~~e~~~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~l 438 (786)
+...+.+.+.++.+..++..+...++..-.++...+..++++..+..+..++.+
T Consensus 389 ~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~L 442 (699)
T KOG0925|consen 389 FEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVL 442 (699)
T ss_pred hhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHh
Confidence 777888888888888889888888888777777888888999999888776654
No 113
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.87 E-value=7.7e-20 Score=216.38 Aligned_cols=144 Identities=21% Similarity=0.313 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccc
Q 003924 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (786)
Q Consensus 250 ~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arG 329 (786)
.....|+..|......+.++||||+|+..++.++..|...|+.+..+||++++.+|..++..|+.|.+.|||||+++++|
T Consensus 430 ~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 430 GQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 45677888888777788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceeEecC-----CCCCHhHHHHHhhccccCCCccEEEEEEec---------ccHHHHHHHHHHhcCCCCCCCC
Q 003924 330 IDIPLLDNVINWD-----FPPKPKIFVHRVGRAARAGRTGTAFSFVTS---------EDMAYLLDLHLFLSKPIRAAPS 394 (786)
Q Consensus 330 lDIp~v~~VI~~d-----~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~---------~e~~~l~~l~~~l~~~~~~~p~ 394 (786)
+|+|.+++||++| +|.+...|+||+||+||. ..|.|++|++. .|...+.+++..++......|.
T Consensus 510 fdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 587 (652)
T PRK05298 510 LDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPK 587 (652)
T ss_pred ccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCCh
Confidence 9999999999887 478999999999999996 78999999994 5677888888888888777664
No 114
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=1.8e-20 Score=207.73 Aligned_cols=313 Identities=19% Similarity=0.237 Sum_probs=210.5
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHH-HHHccCC
Q 003924 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYT 120 (786)
Q Consensus 42 g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l-~~l~~~~ 120 (786)
.|-.....+.+.+..|-.++-||++|.||||||.-..-.+++ . .....| -+-+--|.|.-|..+++.+ .+++-..
T Consensus 353 q~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~e--d-GY~~~G-mIGcTQPRRvAAiSVAkrVa~EM~~~l 428 (1042)
T KOG0924|consen 353 QYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYE--D-GYADNG-MIGCTQPRRVAAISVAKRVAEEMGVTL 428 (1042)
T ss_pred hhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHh--c-ccccCC-eeeecCchHHHHHHHHHHHHHHhCCcc
Confidence 344445666677777778888999999999999843322221 1 112223 2344449999999988754 4565444
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccc-ccCChHHHHHHHHhhcccC
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL-FGMGFAEQLHKILGQLSEN 199 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l-~~~gf~~~l~~Il~~l~~~ 199 (786)
|-.|..-+.-.+.. .....|-++|.|.|+..... +-.|..+.+||+||||.- ++....--+...+..-..+
T Consensus 429 G~~VGYsIRFEdvT------~~~T~IkymTDGiLLrEsL~--d~~L~kYSviImDEAHERslNtDilfGllk~~larRrd 500 (1042)
T KOG0924|consen 429 GDTVGYSIRFEDVT------SEDTKIKYMTDGILLRESLK--DRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRD 500 (1042)
T ss_pred ccccceEEEeeecC------CCceeEEEeccchHHHHHhh--hhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhcc
Confidence 44444333211111 12456889999999876654 456889999999999953 3333222233333233457
Q ss_pred CceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHH-HHHHhc-cCCCcEEEEEcchh
Q 003924 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLY-MIREHI-SSDQQTLIFVSTKH 277 (786)
Q Consensus 200 ~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~-lL~~~~-~~~~k~IVF~~t~~ 277 (786)
..+|..|||+... -...++++...+.+..... .++..|...+.++.....+. .+.-++ ...+.+|||....+
T Consensus 501 lKliVtSATm~a~---kf~nfFgn~p~f~IpGRTy---PV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqe 574 (1042)
T KOG0924|consen 501 LKLIVTSATMDAQ---KFSNFFGNCPQFTIPGRTY---PVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQE 574 (1042)
T ss_pred ceEEEeeccccHH---HHHHHhCCCceeeecCCcc---ceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCc
Confidence 8899999998643 3344556555555544332 34555555555555544333 332222 23478999999888
Q ss_pred hHHHHHHHHHHc----------CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecC-----
Q 003924 278 HVEFLNVLFREE----------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD----- 342 (786)
Q Consensus 278 ~ae~l~~~L~~~----------g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d----- 342 (786)
.++-.+..+... ++.+..||+.|+++-+..++..-..|...++|+|++|+..|.||++.+||+.+
T Consensus 575 diE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~k 654 (1042)
T KOG0924|consen 575 DIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLK 654 (1042)
T ss_pred chhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeee
Confidence 777666555432 57789999999999999998887888899999999999999999999999644
Q ss_pred -------------CCCCHhHHHHHhhccccCCCccEEEEEEecc
Q 003924 343 -------------FPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (786)
Q Consensus 343 -------------~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~ 373 (786)
+|.|-..--||.||+||.| +|.||-+++.+
T Consensus 655 vyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 655 VYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred ecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 3566777799999999986 79999999975
No 115
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.86 E-value=8.8e-20 Score=216.63 Aligned_cols=313 Identities=21% Similarity=0.222 Sum_probs=187.7
Q ss_pred CChHHHHHHHHHHHc----------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003924 45 VPTPIQRKTMPLILS----------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (786)
Q Consensus 45 ~ptpiQ~~aip~il~----------g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~ 114 (786)
.|+++|..|+..+.. .+..+++.+||||||++.+..+...+ .. ....++|||+|+.+|..|+.+.+.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~-~~--~~~~~vl~lvdR~~L~~Q~~~~f~ 314 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKAL-EL--LKNPKVFFVVDRRELDYQLMKEFQ 314 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHH-hh--cCCCeEEEEECcHHHHHHHHHHHH
Confidence 489999999987642 24699999999999988665544333 21 246789999999999999999998
Q ss_pred HHccCCCCeEEEEEcCCChhHHHHHHc-CCCCEEEECcHHHHHHHhhc-cCCCCCce-eeEEeCCccccccCChHHHHHH
Q 003924 115 ELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEV-EDMSLKSV-EYVVFDEADCLFGMGFAEQLHK 191 (786)
Q Consensus 115 ~l~~~~~l~v~~l~gg~~~~~~~~~l~-~~~dIiV~Tpgrll~~l~~~-~~l~l~~l-~~vV~DEah~l~~~gf~~~l~~ 191 (786)
.++... ..+..+.......+. ....|+|+|...|...+... ..+....- -+||+||||+.... .+..
T Consensus 315 ~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~~~ 384 (667)
T TIGR00348 315 SLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----ELAK 384 (667)
T ss_pred hhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----HHHH
Confidence 876321 111122333333333 34789999999997643321 11222111 28999999996532 3333
Q ss_pred HH-hhcccCCceEEEeccCcHHHHHHHHhcCC---CCcceeeccccccCCCcee--eeeecc------------------
Q 003924 192 IL-GQLSENRQTLLFSATLPSALAEFAKAGLR---DPHLVRLDVDTKISPDLKL--AFFTLR------------------ 247 (786)
Q Consensus 192 Il-~~l~~~~q~ll~SATl~~~l~~~~~~~l~---~p~~i~~~~~~~~~~~l~~--~~~~v~------------------ 247 (786)
.+ ..+| +...|+|||||-..-..-....+. .+.+........+...... .|....
T Consensus 385 ~l~~~~p-~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~ 463 (667)
T TIGR00348 385 NLKKALK-NASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIF 463 (667)
T ss_pred HHHhhCC-CCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHH
Confidence 34 3454 678999999984311000000111 1112222211111111100 011000
Q ss_pred --------h-------------------HHHHHHHHHHHHHhc-----cCCCcEEEEEcchhhHHHHHHHHHHc-----C
Q 003924 248 --------Q-------------------EEKHAALLYMIREHI-----SSDQQTLIFVSTKHHVEFLNVLFREE-----G 290 (786)
Q Consensus 248 --------~-------------------~~k~~~Ll~lL~~~~-----~~~~k~IVF~~t~~~ae~l~~~L~~~-----g 290 (786)
+ ......+...+.+++ ..+.+++|||.++.+|..++..|.+. +
T Consensus 464 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~ 543 (667)
T TIGR00348 464 ELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFE 543 (667)
T ss_pred HhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccC
Confidence 0 000111111121111 12479999999999999999988664 2
Q ss_pred CCceeecCCCCHH---------------------HHHHHHHHHhc-CCcEEEEEecccccccCCCCcceeEecCCCCCHh
Q 003924 291 LEPSVCYGDMDQD---------------------ARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPK 348 (786)
Q Consensus 291 ~~v~~lhg~l~q~---------------------~R~~~l~~F~~-g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~ 348 (786)
...+++++..+.. ....++++|+. +..+|||++|++.+|+|.|.+.+++ +|-|....
T Consensus 544 ~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLy-ldKplk~h 622 (667)
T TIGR00348 544 ASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLY-LDKPLKYH 622 (667)
T ss_pred CeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEE-Eecccccc
Confidence 3445555543222 12367889976 6789999999999999999998888 45666566
Q ss_pred HHHHHhhccccC-C--C-ccEEEEEEec
Q 003924 349 IFVHRVGRAARA-G--R-TGTAFSFVTS 372 (786)
Q Consensus 349 ~~vQRvGR~gR~-G--~-~G~ai~lv~~ 372 (786)
.++|.+||+.|. . + .|..+.|+..
T Consensus 623 ~LlQai~R~nR~~~~~K~~g~IvDy~g~ 650 (667)
T TIGR00348 623 GLLQAIARTNRIDGKDKTFGLIVDYRGL 650 (667)
T ss_pred HHHHHHHHhccccCCCCCCEEEEECcCh
Confidence 789999999994 3 2 2555555543
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=3.5e-19 Score=204.63 Aligned_cols=319 Identities=21% Similarity=0.192 Sum_probs=224.6
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.|+ .|+++|--+.-.++.| -|+...||+|||++..+|++..... |..+.|++|+--||.|-++++..+..++
T Consensus 75 lg~-r~ydvQlig~l~Ll~G--~VaEM~TGEGKTLvA~l~a~l~AL~-----G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLLAG--DVIEMATGEGKTLAGAIAAAGYALQ-----GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred cCC-CcchHHHHHHHHHhCC--CcccccCCCCHHHHHHHHHHHHHHc-----CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 466 7999999999888877 4789999999999999998866543 6779999999999999999999999999
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-HHHHhhc-----cCCCCCceeeEEeCCcccccc------------
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFG------------ 182 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~~-----~~l~l~~l~~vV~DEah~l~~------------ 182 (786)
|+++.+++++.+..+..... .+||+++|...| +++|... ...-...+.++|+||+|.++-
T Consensus 147 GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~ 224 (764)
T PRK12326 147 GLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGS 224 (764)
T ss_pred CCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCC
Confidence 99999999987766554444 589999998754 2333321 112245578999999997651
Q ss_pred ---CChHHHHHHHHhhcccC--------C---------------------------------------------------
Q 003924 183 ---MGFAEQLHKILGQLSEN--------R--------------------------------------------------- 200 (786)
Q Consensus 183 ---~gf~~~l~~Il~~l~~~--------~--------------------------------------------------- 200 (786)
......+..+...+..+ .
T Consensus 225 ~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dY 304 (764)
T PRK12326 225 TPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHY 304 (764)
T ss_pred CcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 01112222222222111 1
Q ss_pred -----------------------------------------------------------ceEEEeccCcHHHHHHHHhcC
Q 003924 201 -----------------------------------------------------------QTLLFSATLPSALAEFAKAGL 221 (786)
Q Consensus 201 -----------------------------------------------------------q~ll~SATl~~~l~~~~~~~l 221 (786)
.+.+||+|......+|...|-
T Consensus 305 iV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~ 384 (764)
T PRK12326 305 IVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYD 384 (764)
T ss_pred EEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhC
Confidence 223444444333333333321
Q ss_pred CCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCC
Q 003924 222 RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (786)
Q Consensus 222 ~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~ 301 (786)
-+ .+.+.........-....+.....+|..+++..+.+....+.|+||.|.+....+.++..|...|++..+++..-.
T Consensus 385 l~--Vv~IPtnkp~~R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~ 462 (764)
T PRK12326 385 LG--VSVIPPNKPNIREDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND 462 (764)
T ss_pred Cc--EEECCCCCCceeecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch
Confidence 11 1111111100000001123334567888999988887788999999999999999999999999999999998644
Q ss_pred HHHHHHHHHHHhcCC-cEEEEEecccccccCCCCc---------------ceeEecCCCCCHhHHHHHhhccccCCCccE
Q 003924 302 QDARKIHVSRFRARK-TMFLIVTDVAARGIDIPLL---------------DNVINWDFPPKPKIFVHRVGRAARAGRTGT 365 (786)
Q Consensus 302 q~~R~~~l~~F~~g~-~~ILVaTdv~arGlDIp~v---------------~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ 365 (786)
..+- .++. ..|+ -.|.|||++|+||.||.-- -+||....|.|...-.|-.||+||.|.+|.
T Consensus 463 ~~EA-~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGs 539 (764)
T PRK12326 463 AEEA-RIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGS 539 (764)
T ss_pred HhHH-HHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCc
Confidence 3332 2222 3454 4699999999999999732 378888899999999999999999999999
Q ss_pred EEEEEeccc
Q 003924 366 AFSFVTSED 374 (786)
Q Consensus 366 ai~lv~~~e 374 (786)
+..|++-+|
T Consensus 540 s~f~lSleD 548 (764)
T PRK12326 540 SVFFVSLED 548 (764)
T ss_pred eeEEEEcch
Confidence 999999765
No 117
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.84 E-value=8.1e-20 Score=209.16 Aligned_cols=297 Identities=19% Similarity=0.229 Sum_probs=198.0
Q ss_pred CCChHHHHHHHHHHH----cC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHcc
Q 003924 44 KVPTPIQRKTMPLIL----SG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (786)
Q Consensus 44 ~~ptpiQ~~aip~il----~g-~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~ 118 (786)
..|+++|..||..+. .| +.+++++.||+|||.+++ .++.+|... ..-.++|+|+.+..|+.|.+..+..+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~--~~~KRVLFLaDR~~Lv~QA~~af~~~~P 240 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKS--GWVKRVLFLADRNALVDQAYGAFEDFLP 240 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhc--chhheeeEEechHHHHHHHHHHHHHhCC
Confidence 368999999997765 34 348999999999998865 444455543 2456899999999999999988877653
Q ss_pred CCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhc----cCCCCCceeeEEeCCccccccCChHHHHHHHHh
Q 003924 119 YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV----EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (786)
Q Consensus 119 ~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~----~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~ 194 (786)
+.. ....+.+... ...+.|.|+|+.++...+... ..+....+++||+||||| |.......|+.
T Consensus 241 ~~~--~~n~i~~~~~-------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR----gi~~~~~~I~d 307 (875)
T COG4096 241 FGT--KMNKIEDKKG-------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR----GIYSEWSSILD 307 (875)
T ss_pred Ccc--ceeeeecccC-------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh----hHHhhhHHHHH
Confidence 321 1112211111 114789999999998877542 235567799999999999 56667778888
Q ss_pred hcccCCceEEEeccCcHHHHHHHHh-------------------cCCCCcceeecccccc----CCC-----------c-
Q 003924 195 QLSENRQTLLFSATLPSALAEFAKA-------------------GLRDPHLVRLDVDTKI----SPD-----------L- 239 (786)
Q Consensus 195 ~l~~~~q~ll~SATl~~~l~~~~~~-------------------~l~~p~~i~~~~~~~~----~~~-----------l- 239 (786)
.+..-.+.+ +|||...+..-.-. +|-.|..++++.+... +.. +
T Consensus 308 YFdA~~~gL--TATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~ 385 (875)
T COG4096 308 YFDAATQGL--TATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAID 385 (875)
T ss_pred HHHHHHHhh--ccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccC
Confidence 886444333 99986532222212 2223334443321110 000 0
Q ss_pred --eeeeeecc------hHHHHHHHHHHHHHhccC------CCcEEEEEcchhhHHHHHHHHHHc-----CCCceeecCCC
Q 003924 240 --KLAFFTLR------QEEKHAALLYMIREHISS------DQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDM 300 (786)
Q Consensus 240 --~~~~~~v~------~~~k~~~Ll~lL~~~~~~------~~k~IVF~~t~~~ae~l~~~L~~~-----g~~v~~lhg~l 300 (786)
.+.|-... -......+...+.+.+.. -++|||||.+..||+++...|... +--+..|.|+-
T Consensus 386 ~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~ 465 (875)
T COG4096 386 EDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDA 465 (875)
T ss_pred cccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccc
Confidence 01111111 011233444444444433 468999999999999999999865 34467788876
Q ss_pred CHHHHHHHHHHHhcC--CcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccC
Q 003924 301 DQDARKIHVSRFRAR--KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360 (786)
Q Consensus 301 ~q~~R~~~l~~F~~g--~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~ 360 (786)
.+.+. .++.|... -.+|.|+.|++..|||+|.|-++|.+-.-.|..-|.|++||.-|.
T Consensus 466 ~~~q~--~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 466 EQAQA--LIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred hhhHH--HHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 66543 35566553 357888889999999999999999999999999999999999995
No 118
>PF08147 DBP10CT: DBP10CT (NUC160) domain; InterPro: IPR012541 This C-terminal domain is found in the Dbp10p subfamily of hypothetical RNA helicases [].; GO: 0003723 RNA binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0005634 nucleus
Probab=99.84 E-value=6.3e-22 Score=160.22 Aligned_cols=62 Identities=50% Similarity=0.888 Sum_probs=56.1
Q ss_pred ccccCcchhhccccccccccccCCcccccCCCccccCCCCeeecCCccccccc-cccchHHHHhh
Q 003924 628 DLVADDSGGLQKQKQVYHWDKRGKKYIKLNNGERVSASGKVVKTESGAKVKAT-KTGIYKKWKER 691 (786)
Q Consensus 628 dl~~d~~~~~~~~~~~~~Wd~kkkk~v~~~~~~~~~~~~k~i~~Esg~~i~a~-~~~~y~~W~~~ 691 (786)
||++||+++|++|+++|+||+|+||||+.++ ++..++|+||||||++|||+ +||+|++|+++
T Consensus 1 DL~~Dd~~~~~~~k~~~~WDrKkKKfV~~~~--~~~~~~K~IrtESG~~i~as~ksg~Y~~Wkkk 63 (64)
T PF08147_consen 1 DLTGDDAQGMQKQKQVMKWDRKKKKFVKVTN--DGSDNKKKIRTESGVKIPASYKSGRYDKWKKK 63 (64)
T ss_pred CCcchhhhHHhhccccccccccccceecccC--CCCcccceeEcCCCcEEecccccchHHHHhhc
Confidence 8999999999999999999999999999865 33556888999999999997 99999999865
No 119
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.84 E-value=2.3e-19 Score=195.72 Aligned_cols=166 Identities=21% Similarity=0.250 Sum_probs=131.6
Q ss_pred CCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhh
Q 003924 199 NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHH 278 (786)
Q Consensus 199 ~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ 278 (786)
..|+|+.||||.+.-.+.... +-+.-.+.......| .+..-+.....+.|+.-++.....+.++||-+-|+..
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~---~vveQiIRPTGLlDP----~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkm 458 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGG---NVVEQIIRPTGLLDP----EIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKM 458 (663)
T ss_pred cCCEEEEECCCChHHHHhccC---ceeEEeecCCCCCCC----ceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHH
Confidence 469999999987643332210 000001111111122 2222334556788888888888889999999999999
Q ss_pred HHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecC-----CCCCHhHHHHH
Q 003924 279 VEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD-----FPPKPKIFVHR 353 (786)
Q Consensus 279 ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d-----~P~s~~~~vQR 353 (786)
+|.|.++|.+.|+.+.++|++.+.-+|.+++...+.|.++|||.-+.+-.|||+|.|.+|..+| |..|..+++|.
T Consensus 459 AEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQt 538 (663)
T COG0556 459 AEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQT 538 (663)
T ss_pred HHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999877 56789999999
Q ss_pred hhccccCCCccEEEEEEec
Q 003924 354 VGRAARAGRTGTAFSFVTS 372 (786)
Q Consensus 354 vGR~gR~G~~G~ai~lv~~ 372 (786)
+||++|. -.|.++++.+.
T Consensus 539 IGRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 539 IGRAARN-VNGKVILYADK 556 (663)
T ss_pred HHHHhhc-cCCeEEEEchh
Confidence 9999995 56999988764
No 120
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.83 E-value=4.9e-19 Score=199.36 Aligned_cols=320 Identities=21% Similarity=0.300 Sum_probs=221.3
Q ss_pred CChHHHHHHHHHHH----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 45 ~ptpiQ~~aip~il----~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.++++|.+.+..+. .|-++|+...+|-|||+- .|.++..|.......|+ .|||||-..|..+ .++++.|. .
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~~~GP-fLVi~P~StL~NW-~~Ef~rf~--P 241 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKGIPGP-FLVIAPKSTLDNW-MNEFKRFT--P 241 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcCCCCC-eEEEeeHhhHHHH-HHHHHHhC--C
Confidence 68999999998766 467899999999999975 23344444432223344 7999999887544 45566665 4
Q ss_pred CCeEEEEEcCCChhHHH-H-H-HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcc
Q 003924 121 DLRISLLVGGDSMESQF-E-E-LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~-~-~-l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~ 197 (786)
++.+.+++|.......+ + . .....+|+|||++.++.--. .+.--.+.|+|||||||+-... ..|..++..+.
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~dk~---~lk~~~W~ylvIDEaHRiKN~~--s~L~~~lr~f~ 316 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKDKS---FLKKFNWRYLVIDEAHRIKNEK--SKLSKILREFK 316 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhhHH---HHhcCCceEEEechhhhhcchh--hHHHHHHHHhc
Confidence 68888888865322222 1 1 23579999999998876532 3444467899999999998653 66777777776
Q ss_pred cCCceEEEeccCcH-HHHH---HHHhcCC--------------------------------CCcce---eeccccccCCC
Q 003924 198 ENRQTLLFSATLPS-ALAE---FAKAGLR--------------------------------DPHLV---RLDVDTKISPD 238 (786)
Q Consensus 198 ~~~q~ll~SATl~~-~l~~---~~~~~l~--------------------------------~p~~i---~~~~~~~~~~~ 238 (786)
....+|+|+||-. ++.+ ++.-.+. .|.+. ..+++...++.
T Consensus 317 -~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppK 395 (971)
T KOG0385|consen 317 -TDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLPPK 395 (971)
T ss_pred -ccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCCCc
Confidence 3445778888721 1111 1110000 00000 00000000110
Q ss_pred cee-------------------------------------------------ee---------------eecchHHHHHH
Q 003924 239 LKL-------------------------------------------------AF---------------FTLRQEEKHAA 254 (786)
Q Consensus 239 l~~-------------------------------------------------~~---------------~~v~~~~k~~~ 254 (786)
.+. .| ..+....|+..
T Consensus 396 kE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~v 475 (971)
T KOG0385|consen 396 KELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLV 475 (971)
T ss_pred ceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceeh
Confidence 000 00 11112335556
Q ss_pred HHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC---cEEEEEecccccccC
Q 003924 255 LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK---TMFLIVTDVAARGID 331 (786)
Q Consensus 255 Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~---~~ILVaTdv~arGlD 331 (786)
|-.+|......+.+||||..-....+-|..++.-.++..+.|.|+++-++|...++.|.... .-+|++|.+.+-|||
T Consensus 476 LDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGIN 555 (971)
T KOG0385|consen 476 LDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGIN 555 (971)
T ss_pred HHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccc
Confidence 66666666678999999999888889999999889999999999999999999999998754 446889999999999
Q ss_pred CCCcceeEecCCCCCHhHHHHHhhccccCCCcc--EEEEEEecccH
Q 003924 332 IPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSEDM 375 (786)
Q Consensus 332 Ip~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G--~ai~lv~~~e~ 375 (786)
+...|+||.||.-|+|..-+|..-|++|.|+.- .+|-|++.+-+
T Consensus 556 L~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 556 LTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred cccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchH
Confidence 999999999999999999999999999999864 55667777644
No 121
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=1.2e-18 Score=204.71 Aligned_cols=317 Identities=21% Similarity=0.258 Sum_probs=218.4
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
+|. .|+++|--.-=.+ ...-|+...||+|||+++.+|++-.... |..+.|++|+--||.|-++++..+..+.
T Consensus 79 lGm-~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~-----G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 79 MGM-RHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALS-----GKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred hCC-CcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 464 6777777654334 4557899999999999999999865443 6779999999999999999999999999
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-HHHHhhccCCC-------CCceeeEEeCCcccccc-C--------
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVEDMS-------LKSVEYVVFDEADCLFG-M-------- 183 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~~~~l~-------l~~l~~vV~DEah~l~~-~-------- 183 (786)
|+++.+++++.+..+....+. ++|+++|..-| +++|.. .+. ...+.++||||+|.++- .
T Consensus 151 Gl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD--~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIIS 226 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRD--NMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIIS 226 (913)
T ss_pred CCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhc--cceechhhhcccccceeEechhhheeccccCCceeec
Confidence 999999988877665544443 99999999876 444443 222 37789999999998761 0
Q ss_pred -------ChHHHHHHHHhhccc--------------------CC------------------------------------
Q 003924 184 -------GFAEQLHKILGQLSE--------------------NR------------------------------------ 200 (786)
Q Consensus 184 -------gf~~~l~~Il~~l~~--------------------~~------------------------------------ 200 (786)
.....+..++..+.. .+
T Consensus 227 g~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~ 306 (913)
T PRK13103 227 GQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGL 306 (913)
T ss_pred CCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHH
Confidence 011222222222200 01
Q ss_pred -------------------------------------------------------------------------------c
Q 003924 201 -------------------------------------------------------------------------------Q 201 (786)
Q Consensus 201 -------------------------------------------------------------------------------q 201 (786)
.
T Consensus 307 ~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~k 386 (913)
T PRK13103 307 LTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNK 386 (913)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcch
Confidence 1
Q ss_pred eEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHH
Q 003924 202 TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEF 281 (786)
Q Consensus 202 ~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~ 281 (786)
+.+||+|....-.+|...|--+ ++.+.........-....+.....+|..+++..+.+....+.||||-+.|+...+.
T Consensus 387 LsGMTGTa~te~~Ef~~iY~l~--Vv~IPTnkP~~R~D~~d~vy~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ 464 (913)
T PRK13103 387 LSGMTGTADTEAFEFRQIYGLD--VVVIPPNKPLARKDFNDLVYLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEH 464 (913)
T ss_pred hccCCCCCHHHHHHHHHHhCCC--EEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHH
Confidence 1222222222222222221111 01111100000000111233445678999999998888889999999999999999
Q ss_pred HHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC-cEEEEEecccccccCCC---------------------------
Q 003924 282 LNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-TMFLIVTDVAARGIDIP--------------------------- 333 (786)
Q Consensus 282 l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~-~~ILVaTdv~arGlDIp--------------------------- 333 (786)
++.+|...+++..+++......+-. ++. ..|+ -.|.|||++|+||.||.
T Consensus 465 ls~~L~~~gi~h~VLNAk~~~~EA~-IIa--~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~ 541 (913)
T PRK13103 465 MSNLLKKEGIEHKVLNAKYHEKEAE-IIA--QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADW 541 (913)
T ss_pred HHHHHHHcCCcHHHhccccchhHHH-HHH--cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999999999988888764433322 222 4564 46999999999999995
Q ss_pred ----------CcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEeccc
Q 003924 334 ----------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (786)
Q Consensus 334 ----------~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e 374 (786)
+--+||--..|.|...=.|-.||+||.|.+|.+-.|++-+|
T Consensus 542 ~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 542 QKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred HhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 22378888889999999999999999999999999999765
No 122
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.82 E-value=4.8e-19 Score=177.07 Aligned_cols=186 Identities=40% Similarity=0.597 Sum_probs=154.2
Q ss_pred HCCCCCChHHHHHHHHHHHcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHcc
Q 003924 40 RKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (786)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~g-~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~ 118 (786)
..++..|+|+|.++++.++.. +.+++.++||||||.+++.++++.+... ...++||++|+..++.|+...+..+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~---~~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG---KGKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc---CCCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 357789999999999999999 9999999999999999999999887653 245799999999999999999888776
Q ss_pred CCCCeEEEEEcCCChhHHHHHHcCCC-CEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcc
Q 003924 119 YTDLRISLLVGGDSMESQFEELAQNP-DIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (786)
Q Consensus 119 ~~~l~v~~l~gg~~~~~~~~~l~~~~-dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~ 197 (786)
........+.++......+..+..+. +|+++|++.+.+.+... ......+++||+||+|.+....+...+..++..++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~-~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~ 158 (201)
T smart00487 80 SLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLEND-LLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLP 158 (201)
T ss_pred cCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcC-CcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCC
Confidence 55545556666666555555565555 99999999999988763 35677889999999999987678889999999888
Q ss_pred cCCceEEEeccCcHHHHHHHHhcCCCCcceee
Q 003924 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRL 229 (786)
Q Consensus 198 ~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~ 229 (786)
...+++++|||++......+..++.++..+..
T Consensus 159 ~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~ 190 (201)
T smart00487 159 KNVQLLLLSATPPEEIENLLELFLNDPVFIDV 190 (201)
T ss_pred ccceEEEEecCCchhHHHHHHHhcCCCEEEeC
Confidence 89999999999999988888888875544433
No 123
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.82 E-value=6.1e-19 Score=207.79 Aligned_cols=319 Identities=19% Similarity=0.174 Sum_probs=227.1
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHH-HHHccCCCCe
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLR 123 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l-~~l~~~~~l~ 123 (786)
.-+..++..+..|.+++-+++.|.||+|||.-....+++...... ...++++--|.|--|..+++.+ .+.+...+-.
T Consensus 173 Pa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~ 250 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGESLGEE 250 (924)
T ss_pred ccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhccccCCe
Confidence 346778888899999999999999999999865555565554432 4566777779999999988754 4566666666
Q ss_pred EEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc-cCChHHHHHHHHhhcccCCce
Q 003924 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQT 202 (786)
Q Consensus 124 v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~-~~gf~~~l~~Il~~l~~~~q~ 202 (786)
|+.-++..+.. .....+++||.|.|+..+.. +..+..+..||+||+|.-. +..|.-.+...+-...+..++
T Consensus 251 VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~--~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lkv 322 (924)
T KOG0920|consen 251 VGYQVRLESKR------SRETRLLFCTTGVLLRRLQS--DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKV 322 (924)
T ss_pred eeEEEeeeccc------CCceeEEEecHHHHHHHhcc--CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceE
Confidence 66666544422 23477999999999999986 5678999999999999644 455666555555555678999
Q ss_pred EEEeccCcHHHHHHHHhcCCCCcceeeccccccC----------------CCceee------------eeecchHHHHHH
Q 003924 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKIS----------------PDLKLA------------FFTLRQEEKHAA 254 (786)
Q Consensus 203 ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~----------------~~l~~~------------~~~v~~~~k~~~ 254 (786)
||||||+.. +..+.|++....+.+....... ...... ......+.....
T Consensus 323 ILMSAT~da---e~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~L 399 (924)
T KOG0920|consen 323 ILMSATLDA---ELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDL 399 (924)
T ss_pred EEeeeecch---HHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHH
Confidence 999999873 3555566665555543221100 000000 000011112222
Q ss_pred HHHHHHHhc--cCCCcEEEEEcchhhHHHHHHHHHHc-------CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc
Q 003924 255 LLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREE-------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (786)
Q Consensus 255 Ll~lL~~~~--~~~~k~IVF~~t~~~ae~l~~~L~~~-------g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv 325 (786)
+..++.... ...+.+|||.+....+..++..|... .+.+..+|+.|+..++..++...-.|...|+++|++
T Consensus 400 i~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNI 479 (924)
T KOG0920|consen 400 IEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNI 479 (924)
T ss_pred HHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhh
Confidence 222222211 34678999999999999999999752 255778999999999999998888999999999999
Q ss_pred cccccCCCCcceeEe--------cCCC----------CCHhHHHHHhhccccCCCccEEEEEEecccHHH
Q 003924 326 AARGIDIPLLDNVIN--------WDFP----------PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (786)
Q Consensus 326 ~arGlDIp~v~~VI~--------~d~P----------~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~ 377 (786)
|+..|-||+|-+||+ ||+- .+-..-.||.||+||. ++|.||-+++...+..
T Consensus 480 AETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 480 AETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEK 548 (924)
T ss_pred HhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhh
Confidence 999999999999995 4432 2334468999999997 7899999999875543
No 124
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.3e-18 Score=195.89 Aligned_cols=302 Identities=21% Similarity=0.290 Sum_probs=199.8
Q ss_pred HHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhh---cCCCCCeEEEEEcCcHHHHHHHHHH-HHHHccCCCCeEEEE
Q 003924 52 KTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQ---HVPQGGVRALILSPTRDLALQTLKF-TKELGRYTDLRISLL 127 (786)
Q Consensus 52 ~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~---~~~~~g~r~LIL~PtreLa~Q~~~~-l~~l~~~~~l~v~~l 127 (786)
+++..|..+--||+||.||||||. .+|-+-.-.. +....+.-+-|--|.|.-|..+++. ..+++. .+-.|+..
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVsYq 339 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVSYQ 339 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-CccceeEE
Confidence 455566666779999999999998 4554433221 1111233455667999999988874 445664 34444443
Q ss_pred E--cCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc-----CChHHHHHHHHhhccc--
Q 003924 128 V--GGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-----MGFAEQLHKILGQLSE-- 198 (786)
Q Consensus 128 ~--gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~-----~gf~~~l~~Il~~l~~-- 198 (786)
+ .|+ +.....|.++|.|.|+..+.. ++.|..+.+||+||||.-.- .|....+..+......
T Consensus 340 IRfd~t--------i~e~T~IkFMTDGVLLrEi~~--DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~ 409 (1172)
T KOG0926|consen 340 IRFDGT--------IGEDTSIKFMTDGVLLREIEN--DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQ 409 (1172)
T ss_pred EEeccc--------cCCCceeEEecchHHHHHHHH--hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3 222 234578999999999999986 78899999999999996432 1333444444444433
Q ss_pred ----CCceEEEeccCcHHHHHHH---HhcCCCCcceeeccccccCCCceeeeeecchHHHHHH-HHH--HHHHhccCCCc
Q 003924 199 ----NRQTLLFSATLPSALAEFA---KAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAA-LLY--MIREHISSDQQ 268 (786)
Q Consensus 199 ----~~q~ll~SATl~~~l~~~~---~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~-Ll~--lL~~~~~~~~k 268 (786)
...+|+|||||- +.+|. +.+-.-|.++.++..... +.+.|.--.+.+..+. ... .|.+.+ +.+.
T Consensus 410 ~~~kpLKLIIMSATLR--VsDFtenk~LFpi~pPlikVdARQfP---VsIHF~krT~~DYi~eAfrKtc~IH~kL-P~G~ 483 (1172)
T KOG0926|consen 410 CQIKPLKLIIMSATLR--VSDFTENKRLFPIPPPLIKVDARQFP---VSIHFNKRTPDDYIAEAFRKTCKIHKKL-PPGG 483 (1172)
T ss_pred cccCceeEEEEeeeEE--ecccccCceecCCCCceeeeecccCc---eEEEeccCCCchHHHHHHHHHHHHhhcC-CCCc
Confidence 457899999974 33343 122234556666654322 2233322222222222 111 122333 4567
Q ss_pred EEEEEcchhhHHHHHHHHHHc-----------------------------------------------------------
Q 003924 269 TLIFVSTKHHVEFLNVLFREE----------------------------------------------------------- 289 (786)
Q Consensus 269 ~IVF~~t~~~ae~l~~~L~~~----------------------------------------------------------- 289 (786)
+|||+...+.+++|++.|++.
T Consensus 484 ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~ 563 (1172)
T KOG0926|consen 484 ILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFAS 563 (1172)
T ss_pred EEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchh
Confidence 999999999999999998752
Q ss_pred ----------------------------------------CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccc
Q 003924 290 ----------------------------------------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARG 329 (786)
Q Consensus 290 ----------------------------------------g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arG 329 (786)
.+-|..+|+-|+..++..+++.-..|..-++|+|+||+..
T Consensus 564 ~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETS 643 (1172)
T KOG0926|consen 564 LRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETS 643 (1172)
T ss_pred hhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcc
Confidence 0115566777888888888877778888899999999999
Q ss_pred cCCCCcceeEecCCC--------C----------CHhHHHHHhhccccCCCccEEEEEEecc
Q 003924 330 IDIPLLDNVINWDFP--------P----------KPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (786)
Q Consensus 330 lDIp~v~~VI~~d~P--------~----------s~~~~vQRvGR~gR~G~~G~ai~lv~~~ 373 (786)
|.||++.+||+.+.- . |-..--||+||+||.| +|.||-+|+..
T Consensus 644 LTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSSA 704 (1172)
T KOG0926|consen 644 LTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSSA 704 (1172)
T ss_pred cccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhhH
Confidence 999999999965432 2 2233479999999987 79999999875
No 125
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.81 E-value=7.3e-18 Score=203.67 Aligned_cols=321 Identities=18% Similarity=0.222 Sum_probs=205.4
Q ss_pred HHHHCCCCCChHHHHHHHHHHH----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHH-H
Q 003924 37 AIKRKGYKVPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL-K 111 (786)
Q Consensus 37 ~l~~~g~~~ptpiQ~~aip~il----~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~-~ 111 (786)
.+...|| +++|-|.+.+..+. .+..+++.|+||+|||++|++|++... .+.++||++||++|+.|+. +
T Consensus 238 ~~~~~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~------~~~~vvI~t~T~~Lq~Ql~~~ 310 (820)
T PRK07246 238 NIALLGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS------DQRQIIVSVPTKILQDQIMAE 310 (820)
T ss_pred hhccCCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc------CCCcEEEEeCcHHHHHHHHHH
Confidence 4444577 79999999554433 467899999999999999999988753 2568999999999999994 6
Q ss_pred HHHHHccCCCCeEEEEEcCCChhH-----------------------------------------------HHHH-----
Q 003924 112 FTKELGRYTDLRISLLVGGDSMES-----------------------------------------------QFEE----- 139 (786)
Q Consensus 112 ~l~~l~~~~~l~v~~l~gg~~~~~-----------------------------------------------~~~~----- 139 (786)
.+..+++..++.+.++.|+..+-- .+..
T Consensus 311 ~i~~l~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~ 390 (820)
T PRK07246 311 EVKAIQEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDG 390 (820)
T ss_pred HHHHHHHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccC
Confidence 778888878888887776632210 0000
Q ss_pred -------------------HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCC-----h-------HH-
Q 003924 140 -------------------LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-----F-------AE- 187 (786)
Q Consensus 140 -------------------l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~g-----f-------~~- 187 (786)
-...++|||+...-|+.++... -.+...++|||||||++.+.. . ..
T Consensus 391 ~~~~~cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~--~~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~ 468 (820)
T PRK07246 391 NLSQSSLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDD--KDFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQT 468 (820)
T ss_pred CCCCCCCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhc--cCCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHH
Confidence 0124689999999888877542 235678999999999875310 0 00
Q ss_pred ---------------------------------------------H----H-----------HHHHhh------c-----
Q 003924 188 ---------------------------------------------Q----L-----------HKILGQ------L----- 196 (786)
Q Consensus 188 ---------------------------------------------~----l-----------~~Il~~------l----- 196 (786)
. + ..++.. +
T Consensus 469 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~ 548 (820)
T PRK07246 469 IQKALSGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQ 548 (820)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 0 0 000000 0
Q ss_pred ----------------------ccCCceEEEeccCc--HHHHHHHH-hcCCCCcceeeccccccCCCceeeee-------
Q 003924 197 ----------------------SENRQTLLFSATLP--SALAEFAK-AGLRDPHLVRLDVDTKISPDLKLAFF------- 244 (786)
Q Consensus 197 ----------------------~~~~q~ll~SATl~--~~l~~~~~-~~l~~p~~i~~~~~~~~~~~l~~~~~------- 244 (786)
+....+|++||||+ +... |.. .++.......+. ..... -...+.
T Consensus 549 ~~~~~~~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~-~~~~lGl~~~~~~~~~--~~~~~-~~~~~i~~~~p~~ 624 (820)
T PRK07246 549 SEKRVTYLNSASKAFTHFSQLLPETCKTYFVSATLQISPRVS-LADLLGFEEYLFHKIE--KDKKQ-DQLVVVDQDMPLV 624 (820)
T ss_pred CCcceeEEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCc-HHHHcCCCccceecCC--CChHH-ccEEEeCCCCCCC
Confidence 01136789999995 3322 332 344332222221 11111 011111
Q ss_pred -ecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEe
Q 003924 245 -TLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323 (786)
Q Consensus 245 -~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaT 323 (786)
....+.....+...|......+++++|++++....+.++..|....+.+ ...|.-. .+..++++|+.+...||++|
T Consensus 625 ~~~~~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~ 701 (820)
T PRK07246 625 TETSDEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGL 701 (820)
T ss_pred CCCChHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEec
Confidence 0112344456666665555567899999999999999999997654444 4444222 24568999999988999999
Q ss_pred cccccccCCCC--cceeEecCCCC----C--------------------------HhHHHHHhhccccCCCccEEEEEEe
Q 003924 324 DVAARGIDIPL--LDNVINWDFPP----K--------------------------PKIFVHRVGRAARAGRTGTAFSFVT 371 (786)
Q Consensus 324 dv~arGlDIp~--v~~VI~~d~P~----s--------------------------~~~~vQRvGR~gR~G~~G~ai~lv~ 371 (786)
+...+|||+|. ...||...+|. + .-.+.|-+||.-|....--++++++
T Consensus 702 ~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD 781 (820)
T PRK07246 702 GSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILD 781 (820)
T ss_pred chhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEEC
Confidence 99999999983 45566566652 1 1125889999999765333455666
Q ss_pred cc
Q 003924 372 SE 373 (786)
Q Consensus 372 ~~ 373 (786)
+.
T Consensus 782 ~R 783 (820)
T PRK07246 782 RR 783 (820)
T ss_pred Cc
Confidence 54
No 126
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=1.7e-16 Score=184.88 Aligned_cols=319 Identities=19% Similarity=0.206 Sum_probs=219.7
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.|. .|+++|--.-=.+..| -|+...||=|||+++.+|++-... .|..+-|++..--||.-=++++..+-.++
T Consensus 75 lG~-r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL-----~GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 75 LGK-RPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNAL-----TGKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred hCC-CcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHh-----cCCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 466 7888998877555555 589999999999999999865433 25668899999999999999999999999
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-HHHHhhc-----cCCCCCceeeEEeCCcccccc------------
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFG------------ 182 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~~-----~~l~l~~l~~vV~DEah~l~~------------ 182 (786)
|+.|+++..+...++...+. .+||+++|...| +++|... ...-...+.+.|+||+|.++-
T Consensus 147 GLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~ 224 (925)
T PRK12903 147 GLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGG 224 (925)
T ss_pred CCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCC
Confidence 99999999877666554444 589999998765 3444431 112245677999999997651
Q ss_pred ----CChHHHHHHHHhhccc-------CC---------------------------------------------------
Q 003924 183 ----MGFAEQLHKILGQLSE-------NR--------------------------------------------------- 200 (786)
Q Consensus 183 ----~gf~~~l~~Il~~l~~-------~~--------------------------------------------------- 200 (786)
..+...+..++..+.. ..
T Consensus 225 ~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYi 304 (925)
T PRK12903 225 QSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYI 304 (925)
T ss_pred CccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceE
Confidence 0122222222222211 01
Q ss_pred ----------------------------------------------------------ceEEEeccCcHHHHHHHHhcCC
Q 003924 201 ----------------------------------------------------------QTLLFSATLPSALAEFAKAGLR 222 (786)
Q Consensus 201 ----------------------------------------------------------q~ll~SATl~~~l~~~~~~~l~ 222 (786)
.+.+||+|....-.+|...|--
T Consensus 305 V~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l 384 (925)
T PRK12903 305 VRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNM 384 (925)
T ss_pred EECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCC
Confidence 1223333333333333322211
Q ss_pred CCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCH
Q 003924 223 DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (786)
Q Consensus 223 ~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q 302 (786)
+ ++.+....+....-....+......|..+++..+.+....+.|+||.|.+...++.++.+|...|++..+++..-.
T Consensus 385 ~--Vv~IPTnkP~~R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~- 461 (925)
T PRK12903 385 R--VNVVPTNKPVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN- 461 (925)
T ss_pred C--EEECCCCCCeeeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch-
Confidence 1 1111111000000001123344567888898888887788999999999999999999999999999999988643
Q ss_pred HHHHHHHHHHhcCC-cEEEEEecccccccCCCCcc--------eeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecc
Q 003924 303 DARKIHVSRFRARK-TMFLIVTDVAARGIDIPLLD--------NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (786)
Q Consensus 303 ~~R~~~l~~F~~g~-~~ILVaTdv~arGlDIp~v~--------~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~ 373 (786)
+++..+-. ..|+ -.|.|||++|+||.||.--. +||....|.|...-.|..||+||.|.+|.+-.|++-+
T Consensus 462 -e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lSLe 539 (925)
T PRK12903 462 -AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFISLD 539 (925)
T ss_pred -hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEecc
Confidence 33322222 4564 47999999999999997433 8999999999999999999999999999999999876
Q ss_pred c
Q 003924 374 D 374 (786)
Q Consensus 374 e 374 (786)
|
T Consensus 540 D 540 (925)
T PRK12903 540 D 540 (925)
T ss_pred h
Confidence 5
No 127
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.78 E-value=1.5e-18 Score=203.77 Aligned_cols=330 Identities=22% Similarity=0.306 Sum_probs=224.4
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----cCCcEEEEcCCCChHHH---HHHHHHHHHHhhcCCCCCeEE
Q 003924 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL----SGADVVAMARTGSGKTA---AFLVPMLQRLNQHVPQGGVRA 96 (786)
Q Consensus 24 ~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il----~g~dvvl~a~TGSGKT~---afllpile~L~~~~~~~g~r~ 96 (786)
.|..|..+|..+.+ .+++.+|-..++.++ .+.++|+...+|-|||. +||-.++..+..+ |+ .
T Consensus 355 ~~~Kle~qp~~~~g------~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~----gp-f 423 (1373)
T KOG0384|consen 355 RFRKLEKQPEYKGG------NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIH----GP-F 423 (1373)
T ss_pred hHHHhhcCcccccc------chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhcc----CC-e
Confidence 34444444444433 589999999998776 46899999999999994 5666666554332 44 7
Q ss_pred EEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH---c-C-----CCCEEEECcHHHHHHHhhccCCCCC
Q 003924 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL---A-Q-----NPDIIIATPGRLMHHLSEVEDMSLK 167 (786)
Q Consensus 97 LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l---~-~-----~~dIiV~Tpgrll~~l~~~~~l~l~ 167 (786)
||++|...+..+.. +|...+++.+++++|.....+.++.. . . .++++++|++.++.-... |.--
T Consensus 424 lvvvplst~~~W~~----ef~~w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~---L~~i 496 (1373)
T KOG0384|consen 424 LVVVPLSTITAWER----EFETWTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAE---LSKI 496 (1373)
T ss_pred EEEeehhhhHHHHH----HHHHHhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhh---hccC
Confidence 99999877655433 33333478899999876655444332 2 2 478999999998765443 3333
Q ss_pred ceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCc-HHHHHHHHhc-CCCCcce------------------
Q 003924 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP-SALAEFAKAG-LRDPHLV------------------ 227 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~-~~l~~~~~~~-l~~p~~i------------------ 227 (786)
...+++|||||+|-+. ...+...+..+..+. .||+|+||- +++.++.... +-.|.-+
T Consensus 497 ~w~~~~vDeahrLkN~--~~~l~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~ 573 (1373)
T KOG0384|consen 497 PWRYLLVDEAHRLKND--ESKLYESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQV 573 (1373)
T ss_pred CcceeeecHHhhcCch--HHHHHHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHH
Confidence 5679999999998753 355555566665333 467788863 3333333211 1111000
Q ss_pred ------------e---eccccccCCCce-------------------------------------------------eee
Q 003924 228 ------------R---LDVDTKISPDLK-------------------------------------------------LAF 243 (786)
Q Consensus 228 ------------~---~~~~~~~~~~l~-------------------------------------------------~~~ 243 (786)
+ -+++..+++..+ +.|
T Consensus 574 ~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpy 653 (1373)
T KOG0384|consen 574 RKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPY 653 (1373)
T ss_pred HHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCcc
Confidence 0 011111111111 111
Q ss_pred eecchHHH----H------HHHHHH-------------HHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCC
Q 003924 244 FTLRQEEK----H------AALLYM-------------IREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (786)
Q Consensus 244 ~~v~~~~k----~------~~Ll~l-------------L~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l 300 (786)
+.-..+++ . ..|..+ |-.....+++||||...+...+.|+++|...+|+...|.|++
T Consensus 654 Li~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsv 733 (1373)
T KOG0384|consen 654 LIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSV 733 (1373)
T ss_pred ccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCc
Confidence 11111111 0 122222 222334678999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhcC---CcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCcc--EEEEEEeccc
Q 003924 301 DQDARKIHVSRFRAR---KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSED 374 (786)
Q Consensus 301 ~q~~R~~~l~~F~~g---~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G--~ai~lv~~~e 374 (786)
..+-|...++.|..- ...+|+||-+.+-|||+..+|.||.||.-|+|..=+|...||+|.|++- .+|-||+.+-
T Consensus 734 rgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 734 RGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred chHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 999999999999864 5678999999999999999999999999999999999999999999874 5588898864
No 128
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.75 E-value=2.1e-16 Score=185.25 Aligned_cols=279 Identities=20% Similarity=0.194 Sum_probs=183.6
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.|+ .|+++|--+.= .-.+.-|+.+.||.|||+++.+|++-... .|..+-||+++..||.+-++++..+-.+.
T Consensus 73 lG~-r~ydvQlig~l--~L~~G~IaEm~TGEGKTL~a~l~ayl~aL-----~G~~VhVvT~NdyLA~RD~e~m~pvy~~L 144 (870)
T CHL00122 73 LGL-RHFDVQLIGGL--VLNDGKIAEMKTGEGKTLVATLPAYLNAL-----TGKGVHIVTVNDYLAKRDQEWMGQIYRFL 144 (870)
T ss_pred hCC-CCCchHhhhhH--hhcCCccccccCCCCchHHHHHHHHHHHh-----cCCceEEEeCCHHHHHHHHHHHHHHHHHc
Confidence 576 58888877653 33556899999999999999999964333 36679999999999999999999999999
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-HHHHhhc-----cCCCCCceeeEEeCCccccc-cC----------
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-GM---------- 183 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~~-----~~l~l~~l~~vV~DEah~l~-~~---------- 183 (786)
|+.|+++.++.+.++..... .+||+++|...| +++|... ...-...+.++|+||+|.++ +.
T Consensus 145 GLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~ 222 (870)
T CHL00122 145 GLTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQ 222 (870)
T ss_pred CCceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCC
Confidence 99999999887776654444 489999999644 2333321 11224567899999999765 10
Q ss_pred -----ChHHHHHHHHhhcccC-----------------------------------------------------------
Q 003924 184 -----GFAEQLHKILGQLSEN----------------------------------------------------------- 199 (786)
Q Consensus 184 -----gf~~~l~~Il~~l~~~----------------------------------------------------------- 199 (786)
........+...+...
T Consensus 223 ~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYi 302 (870)
T CHL00122 223 SKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYI 302 (870)
T ss_pred CccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEE
Confidence 0111111222221110
Q ss_pred ---------------------------------------------------------CceEEEeccCcHHHHHHHHhcCC
Q 003924 200 ---------------------------------------------------------RQTLLFSATLPSALAEFAKAGLR 222 (786)
Q Consensus 200 ---------------------------------------------------------~q~ll~SATl~~~l~~~~~~~l~ 222 (786)
..+.+||+|....-.+|...|--
T Consensus 303 V~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l 382 (870)
T CHL00122 303 VRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNL 382 (870)
T ss_pred EECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCC
Confidence 02334555544433334333211
Q ss_pred CCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCH
Q 003924 223 DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (786)
Q Consensus 223 ~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q 302 (786)
+ ++.++...+....-....+.....+|..+++..+.+....+.|+||-|.|....+.++.+|...|++..+++..-.+
T Consensus 383 ~--vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~ 460 (870)
T CHL00122 383 E--VVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPEN 460 (870)
T ss_pred C--EEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCcc
Confidence 1 11111111100000112233445668888888888877889999999999999999999999999999999986422
Q ss_pred HHHH-HHHHHHhcCC-cEEEEEecccccccCCC
Q 003924 303 DARK-IHVSRFRARK-TMFLIVTDVAARGIDIP 333 (786)
Q Consensus 303 ~~R~-~~l~~F~~g~-~~ILVaTdv~arGlDIp 333 (786)
.+++ .++.. .|+ -.|.|||++|+||.||-
T Consensus 461 ~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 461 VRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred chhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 2222 23332 454 46999999999999986
No 129
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=7.2e-18 Score=181.93 Aligned_cols=318 Identities=17% Similarity=0.230 Sum_probs=215.4
Q ss_pred CChHHHHHHHHHHHcC---CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCC
Q 003924 45 VPTPIQRKTMPLILSG---ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g---~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~ 121 (786)
+++|+|.+++..+..+ +.-|+..|+|+|||++-+-++ ..+ ..++||||.+-.-+.||...+..+....+
T Consensus 302 ~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa-~ti-------kK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 302 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAA-CTI-------KKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred ccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeee-eee-------cccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 6899999999988854 678999999999998754222 122 34699999999999999999988876666
Q ss_pred CeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhh-------ccCCCCCceeeEEeCCccccccCChHHHHHHHHh
Q 003924 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-------VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (786)
Q Consensus 122 l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~-------~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~ 194 (786)
-.++..+.... +....++.|+|+|+..+.+--.+ |..+.-..++++|+||+|.+..+-|..-+.-+-.
T Consensus 374 ~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVlsiv~a 448 (776)
T KOG1123|consen 374 DQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLSIVQA 448 (776)
T ss_pred cceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHHHHHH
Confidence 66666655322 12346789999999866432111 1123345688999999999876555555544433
Q ss_pred hcccCCceEEEeccCcHHHHHHHH-hcCCCCcceeec--------------cc---cccC----------CCceeeeeec
Q 003924 195 QLSENRQTLLFSATLPSALAEFAK-AGLRDPHLVRLD--------------VD---TKIS----------PDLKLAFFTL 246 (786)
Q Consensus 195 ~l~~~~q~ll~SATl~~~l~~~~~-~~l~~p~~i~~~--------------~~---~~~~----------~~l~~~~~~v 246 (786)
+. -|+++||+-.+-..+.. .+|..|.++..+ -. .... ....-....+
T Consensus 449 Hc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyv 523 (776)
T KOG1123|consen 449 HC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYV 523 (776)
T ss_pred Hh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeee
Confidence 33 27899998332111111 122223222111 00 0000 0011112333
Q ss_pred chHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcC-CcEEEEEecc
Q 003924 247 RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR-KTMFLIVTDV 325 (786)
Q Consensus 247 ~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g-~~~ILVaTdv 325 (786)
....|....-.+++.+-..+.++|||..+.-....++-.|.+ -+|||..+|.+|..+++.|.-+ .++.++.+-|
T Consensus 524 MNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKV 598 (776)
T KOG1123|consen 524 MNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKV 598 (776)
T ss_pred cCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceEEEeec
Confidence 445677777777776666789999999887776666655533 4799999999999999999976 5788999999
Q ss_pred cccccCCCCcceeEecCCC-CCHhHHHHHhhccccCCC------ccEEEEEEecc--cHHHHHHHHHHh
Q 003924 326 AARGIDIPLLDNVINWDFP-PKPKIFVHRVGRAARAGR------TGTAFSFVTSE--DMAYLLDLHLFL 385 (786)
Q Consensus 326 ~arGlDIp~v~~VI~~d~P-~s~~~~vQRvGR~gR~G~------~G~ai~lv~~~--e~~~l~~l~~~l 385 (786)
+...||+|..+++|+...- .|-..-.||+||.-|+-+ ....|++|+.+ |+.|-..-+.||
T Consensus 599 gDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~YStKRQ~FL 667 (776)
T KOG1123|consen 599 GDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYYSTKRQQFL 667 (776)
T ss_pred cCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHhhhhhhhhh
Confidence 9999999999999987654 356677899999999743 24557888775 555555555555
No 130
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.74 E-value=2.2e-16 Score=179.16 Aligned_cols=316 Identities=21% Similarity=0.284 Sum_probs=216.2
Q ss_pred CChHHHHHHHHHHH----cCCcEEEEcCCCChHHH---HHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTA---AFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 45 ~ptpiQ~~aip~il----~g~dvvl~a~TGSGKT~---afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
.+.|+|+.++..+. ++..-|+-..+|-|||. +||..+.+. ...-..+|||||.- |..||.+++..+.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S-----~k~~~paLIVCP~T-ii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHS-----GKLTKPALIVCPAT-IIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhc-----ccccCceEEEccHH-HHHHHHHHHHHhC
Confidence 45899999998876 35668999999999995 344333322 11224699999975 6678788777765
Q ss_pred cCCCCeEEEEEcCCChh-------HH-HH-----HHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCC
Q 003924 118 RYTDLRISLLVGGDSME-------SQ-FE-----ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG 184 (786)
Q Consensus 118 ~~~~l~v~~l~gg~~~~-------~~-~~-----~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~g 184 (786)
..++|..++|..+.. .. .. .......|+|+|++.|.-+ . ..+.-..++|+|+||.|++-+.+
T Consensus 279 --p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~-d~l~~~~W~y~ILDEGH~IrNpn 353 (923)
T KOG0387|consen 279 --PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--G-DDLLGILWDYVILDEGHRIRNPN 353 (923)
T ss_pred --cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--C-cccccccccEEEecCcccccCCc
Confidence 557888888754420 01 11 1123456999999877422 1 23445567899999999987654
Q ss_pred hHHHHHHHHhhcccCCceEEEeccCc-HHHHHHHHhc-----------------CCCC----------------------
Q 003924 185 FAEQLHKILGQLSENRQTLLFSATLP-SALAEFAKAG-----------------LRDP---------------------- 224 (786)
Q Consensus 185 f~~~l~~Il~~l~~~~q~ll~SATl~-~~l~~~~~~~-----------------l~~p---------------------- 224 (786)
.++...+..++ ..+.|.+|+||- +.+.++...+ +..|
T Consensus 354 --s~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 354 --SKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred --cHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 45555555555 455566777751 2222222100 0000
Q ss_pred --------cce----------------------eecc---------------------cc------------ccCCCce-
Q 003924 225 --------HLV----------------------RLDV---------------------DT------------KISPDLK- 240 (786)
Q Consensus 225 --------~~i----------------------~~~~---------------------~~------------~~~~~l~- 240 (786)
.+. ++.. .. ..-|.+.
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~ 510 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLD 510 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccccc
Confidence 000 0000 00 0000000
Q ss_pred ---------eee-eecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHH-HcCCCceeecCCCCHHHHHHHH
Q 003924 241 ---------LAF-FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFR-EEGLEPSVCYGDMDQDARKIHV 309 (786)
Q Consensus 241 ---------~~~-~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~-~~g~~v~~lhg~l~q~~R~~~l 309 (786)
..| -.+....|+..+..+|..-...+.++|+|..++...+.+..+|. ..+|.+..+.|..+...|...+
T Consensus 511 ~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lV 590 (923)
T KOG0387|consen 511 RRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLV 590 (923)
T ss_pred CcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHH
Confidence 000 11223457888888888888889999999999999999999998 6899999999999999999999
Q ss_pred HHHhcCCc-E-EEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCcc--EEEEEEeccc
Q 003924 310 SRFRARKT-M-FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSED 374 (786)
Q Consensus 310 ~~F~~g~~-~-ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G--~ai~lv~~~e 374 (786)
++|..+.. . +|++|.|.+-|+|+..++-||.||+-|+|.+=.|..-|+-|.|++- .+|-|++..-
T Consensus 591 d~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 591 DRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred HhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCc
Confidence 99998864 3 5789999999999999999999999999999999999999999864 4466676643
No 131
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.72 E-value=1.1e-15 Score=175.80 Aligned_cols=167 Identities=20% Similarity=0.212 Sum_probs=115.0
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH-HccCCCCe
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE-LGRYTDLR 123 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~-l~~~~~l~ 123 (786)
.|-.+|++.+..+-.+..+|+.|||.+|||++-...+-..|... ...-+|+++||.+|+.|+...+.. |...+-.+
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRes---D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRES---DSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhc---CCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 57889999999999999999999999999987554443333332 233589999999999999876554 42233333
Q ss_pred EEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhc--cCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCc
Q 003924 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV--EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (786)
Q Consensus 124 v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~--~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q 201 (786)
...+.|.-+ ..++.-.-+|.|+|+-|+.+-.++... ..-....+.||||||+|.+..+.-.--+..++... .|.
T Consensus 588 g~sl~g~lt--qEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li--~CP 663 (1330)
T KOG0949|consen 588 GVSLLGDLT--QEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI--PCP 663 (1330)
T ss_pred chhhHhhhh--HHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--CCC
Confidence 334444322 223222347999999999998887752 12236789999999999988654334444444444 588
Q ss_pred eEEEeccCcH--HHHHHHH
Q 003924 202 TLLFSATLPS--ALAEFAK 218 (786)
Q Consensus 202 ~ll~SATl~~--~l~~~~~ 218 (786)
+|.+|||+.+ ....|..
T Consensus 664 ~L~LSATigN~~l~qkWln 682 (1330)
T KOG0949|consen 664 FLVLSATIGNPNLFQKWLN 682 (1330)
T ss_pred eeEEecccCCHHHHHHHHH
Confidence 9999999843 3444444
No 132
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=6e-15 Score=172.69 Aligned_cols=280 Identities=19% Similarity=0.221 Sum_probs=182.1
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.|. .|+++|--.-=.+ ++.-|+.+.||-|||+++.+|++-... .|..+-||+++..||..=++++..+-.+.
T Consensus 82 lG~-r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL-----~GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 82 LGM-RHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNAL-----TGKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred hCC-CcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhh-----cCCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 465 6777887665444 455899999999999999999876544 36679999999999999999999999999
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-----HHHHhh-ccCCCCCceeeEEeCCcccccc-C--------C-
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-----MHHLSE-VEDMSLKSVEYVVFDEADCLFG-M--------G- 184 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-----l~~l~~-~~~l~l~~l~~vV~DEah~l~~-~--------g- 184 (786)
|+.|+++.++.+.++... .-.+||+++|+..| .+.+.. ........+.++||||+|.++- . |
T Consensus 154 GLtvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILIDEArTPLIISg~ 231 (939)
T PRK12902 154 GLSVGLIQQDMSPEERKK--NYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILIDEARTPLIISGQ 231 (939)
T ss_pred CCeEEEECCCCChHHHHH--hcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceeeccCCCcccccCC
Confidence 999999988766554433 34799999999876 444432 1223356788999999998751 0 1
Q ss_pred ------hHHHHHHHHhhccc--------------CCceE-----------------------------------------
Q 003924 185 ------FAEQLHKILGQLSE--------------NRQTL----------------------------------------- 203 (786)
Q Consensus 185 ------f~~~l~~Il~~l~~--------------~~q~l----------------------------------------- 203 (786)
.......+...+.. ..+.+
T Consensus 232 ~~~~~~~y~~~~~~~~~L~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~~~i~nLy~~~~~~~~~i~~AL~A~~lf~ 311 (939)
T PRK12902 232 VERPQEKYQKAAEVAAALQRKDGIDPEGDYEVDEKQRNVLLTDEGFAKAEQLLGVSDLFDPQDPWAHYIFNALKAKELFI 311 (939)
T ss_pred CccchHHHHHHHHHHHHhhhhcccCCCCCeEEecCCCeeeEcHHHHHHHHHHhCchhhcCcccHHHHHHHHHHHHHHHHh
Confidence 11122222222211 11222
Q ss_pred -------------------------------------------------------------------EEeccCcHHHHHH
Q 003924 204 -------------------------------------------------------------------LFSATLPSALAEF 216 (786)
Q Consensus 204 -------------------------------------------------------------------l~SATl~~~l~~~ 216 (786)
+||+|.-..-.+|
T Consensus 312 ~d~dYiV~dg~V~IVDe~TGR~m~grrws~GLHQaIEaKE~v~it~e~~tlAsIT~QnfFr~Y~kLsGMTGTa~te~~Ef 391 (939)
T PRK12902 312 KDVNYIVRNGEVVIVDEFTGRVMPGRRWSDGLHQAIEAKEGVEIQPETQTLASITYQNFFLLYPKLAGMTGTAKTEEVEF 391 (939)
T ss_pred cCCeEEEECCEEEEEECCCCCCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHH
Confidence 2333322222222
Q ss_pred HHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceee
Q 003924 217 AKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC 296 (786)
Q Consensus 217 ~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~l 296 (786)
...|--+ ++.+.........-....+......|..+++..+.+....+.|+||-+.|....+.++.+|...|++..++
T Consensus 392 ~~iY~l~--Vv~IPTnkP~~R~d~~d~vy~t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vL 469 (939)
T PRK12902 392 EKTYKLE--VTVIPTNRPRRRQDWPDQVYKTEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLL 469 (939)
T ss_pred HHHhCCc--EEEcCCCCCeeeecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchhee
Confidence 2222111 11111100000000011223345678889998888887889999999999999999999999999999999
Q ss_pred cCCCCHHHHH-HHHHHHhcCC-cEEEEEecccccccCCCC
Q 003924 297 YGDMDQDARK-IHVSRFRARK-TMFLIVTDVAARGIDIPL 334 (786)
Q Consensus 297 hg~l~q~~R~-~~l~~F~~g~-~~ILVaTdv~arGlDIp~ 334 (786)
+..-.+.+++ .++. ..|+ -.|-|||++|+||.||.-
T Consensus 470 NAk~~~~~~EA~IIa--~AG~~GaVTIATNMAGRGTDIkL 507 (939)
T PRK12902 470 NAKPENVEREAEIVA--QAGRKGAVTIATNMAGRGTDIIL 507 (939)
T ss_pred eCCCcchHhHHHHHH--hcCCCCcEEEeccCCCCCcCEee
Confidence 9863222332 2333 2565 369999999999999863
No 133
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.71 E-value=2.9e-15 Score=174.40 Aligned_cols=321 Identities=16% Similarity=0.160 Sum_probs=203.8
Q ss_pred CChHHHHHHHHHHHc---C-------CcEEEEcCCCChHHHHHHHHHHHHHhhcCC--CCCeEEEEEcCcHHHHHHHHHH
Q 003924 45 VPTPIQRKTMPLILS---G-------ADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGVRALILSPTRDLALQTLKF 112 (786)
Q Consensus 45 ~ptpiQ~~aip~il~---g-------~dvvl~a~TGSGKT~afllpile~L~~~~~--~~g~r~LIL~PtreLa~Q~~~~ 112 (786)
.++|+|++.+..+.. | ..+|+.-.+|+|||+..+..++..|..... ..-.++|||+|.- |+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~s-Lv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSS-LVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHH-HHHHHHHH
Confidence 689999999987653 2 247888899999999877777766666421 1126899999975 67777887
Q ss_pred HHHHccCCCCeEEEEEcCCCh----hHHHHHH---cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCCh
Q 003924 113 TKELGRYTDLRISLLVGGDSM----ESQFEEL---AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF 185 (786)
Q Consensus 113 l~~l~~~~~l~v~~l~gg~~~----~~~~~~l---~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf 185 (786)
|.++.....+....++|+... ...+..+ .-...|++.+++.+..++.. +....++++|+||.|++-..
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~---il~~~~glLVcDEGHrlkN~-- 391 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK---ILLIRPGLLVCDEGHRLKNS-- 391 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH---HhcCCCCeEEECCCCCccch--
Confidence 777654456666667776553 0011111 11345788888988777664 55778999999999997653
Q ss_pred HHHHHHHHhhcccCCceEEEeccCc-HHHHHHHH-hcCCCCcceeec---------------------------------
Q 003924 186 AEQLHKILGQLSENRQTLLFSATLP-SALAEFAK-AGLRDPHLVRLD--------------------------------- 230 (786)
Q Consensus 186 ~~~l~~Il~~l~~~~q~ll~SATl~-~~l~~~~~-~~l~~p~~i~~~--------------------------------- 230 (786)
...+...|..+. ..+.|++|+||- +.+.++.. ..+-+|.+....
T Consensus 392 ~s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL 470 (776)
T KOG0390|consen 392 DSLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQEL 470 (776)
T ss_pred hhHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHH
Confidence 244555555554 556688899982 22333222 122222111100
Q ss_pred ------------c--ccccCCCceeeeeecchHHH---------------------------------------------
Q 003924 231 ------------V--DTKISPDLKLAFFTLRQEEK--------------------------------------------- 251 (786)
Q Consensus 231 ------------~--~~~~~~~l~~~~~~v~~~~k--------------------------------------------- 251 (786)
. -...-|......+.+.....
T Consensus 471 ~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~ 550 (776)
T KOG0390|consen 471 RELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTE 550 (776)
T ss_pred HHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccccc
Confidence 0 00111222222222222111
Q ss_pred -----------------------------HHHHHHHHHHhcc-CCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCC
Q 003924 252 -----------------------------HAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (786)
Q Consensus 252 -----------------------------~~~Ll~lL~~~~~-~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~ 301 (786)
+-.|..+|..... ....+++..|.....+.+..++.-.|+.+..+||.|+
T Consensus 551 ~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~ 630 (776)
T KOG0390|consen 551 KEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS 630 (776)
T ss_pred ccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc
Confidence 1111111100000 0112223334444555556666667999999999999
Q ss_pred HHHHHHHHHHHhcCCc--E-EEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEE--EEEec
Q 003924 302 QDARKIHVSRFRARKT--M-FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAF--SFVTS 372 (786)
Q Consensus 302 q~~R~~~l~~F~~g~~--~-ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai--~lv~~ 372 (786)
..+|..+++.|..... . .|.+|-+.+.||++-+...||.||+.|+|..-.|.++|+-|.|+.-.|| -|++.
T Consensus 631 ~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlat 706 (776)
T KOG0390|consen 631 IKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLAT 706 (776)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecC
Confidence 9999999999987532 3 5668899999999999999999999999999999999999999976664 44544
No 134
>COG4889 Predicted helicase [General function prediction only]
Probab=99.71 E-value=1.1e-17 Score=189.39 Aligned_cols=315 Identities=22% Similarity=0.263 Sum_probs=184.2
Q ss_pred HHHHHCCCCCChHHHHHHHHHHHcC-----CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHH
Q 003924 36 RAIKRKGYKVPTPIQRKTMPLILSG-----ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL 110 (786)
Q Consensus 36 ~~l~~~g~~~ptpiQ~~aip~il~g-----~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~ 110 (786)
..|.-..=..|+|+|+.||...++| +.-++|| +|+|||++.| -+.+.|.. .++|+|+|+..|..|+.
T Consensus 152 ~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMA-cGTGKTfTsL-kisEala~------~~iL~LvPSIsLLsQTl 223 (1518)
T COG4889 152 DNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMA-CGTGKTFTSL-KISEALAA------ARILFLVPSISLLSQTL 223 (1518)
T ss_pred cccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEe-cCCCccchHH-HHHHHHhh------hheEeecchHHHHHHHH
Confidence 3333334448999999999999976 3345555 8999999876 33344432 57999999999999987
Q ss_pred HHHHHHccCCCCeEEEEEcCCCh--------------------hHHHHHH-----cCCCCEEEECcHHHHHHHhhccCCC
Q 003924 111 KFTKELGRYTDLRISLLVGGDSM--------------------ESQFEEL-----AQNPDIIIATPGRLMHHLSEVEDMS 165 (786)
Q Consensus 111 ~~l~~l~~~~~l~v~~l~gg~~~--------------------~~~~~~l-----~~~~dIiV~Tpgrll~~l~~~~~l~ 165 (786)
+....- ...+++...+++.+.. +.....+ ..+--||++|+..+...-.- ....
T Consensus 224 rew~~~-~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe~G 301 (1518)
T COG4889 224 REWTAQ-KELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QEAG 301 (1518)
T ss_pred HHHhhc-cCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HHcC
Confidence 654332 2234554444432211 1111111 23456999999998765543 4567
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcc-----cCCceEEEeccCc---HHHHHHH--------------------
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLS-----ENRQTLLFSATLP---SALAEFA-------------------- 217 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~-----~~~q~ll~SATl~---~~l~~~~-------------------- 217 (786)
+..+++||+|||||.........-..-+..+. +....+.|+|||- .+...-+
T Consensus 302 ~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef 381 (1518)
T COG4889 302 LDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEF 381 (1518)
T ss_pred CCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhh
Confidence 88899999999999764332221111111111 1234578888872 1111111
Q ss_pred ----------HhcCCCCcceeeccccccC-CCceeeeeecchH------HHHHHHHHHH-HHhcc------------CCC
Q 003924 218 ----------KAGLRDPHLVRLDVDTKIS-PDLKLAFFTLRQE------EKHAALLYMI-REHIS------------SDQ 267 (786)
Q Consensus 218 ----------~~~l~~p~~i~~~~~~~~~-~~l~~~~~~v~~~------~k~~~Ll~lL-~~~~~------------~~~ 267 (786)
+..|.++.++.+..+.... ..+.......... .++--...-| ++... +-.
T Consensus 382 ~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~ 461 (1518)
T COG4889 382 HRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQ 461 (1518)
T ss_pred hcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHH
Confidence 1122333333332222111 1111111000000 1111111111 11110 113
Q ss_pred cEEEEEcchhhHHHHHHHHHH-------------cC--CCceeecCCCCHHHHHHHHH---HHhcCCcEEEEEecccccc
Q 003924 268 QTLIFVSTKHHVEFLNVLFRE-------------EG--LEPSVCYGDMDQDARKIHVS---RFRARKTMFLIVTDVAARG 329 (786)
Q Consensus 268 k~IVF~~t~~~ae~l~~~L~~-------------~g--~~v~~lhg~l~q~~R~~~l~---~F~~g~~~ILVaTdv~arG 329 (786)
+.|-||.+......++..+.. .+ +.+.++.|.|+..+|...+. .|..++++||--..+++.|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 467788777666555444432 13 34455668899888854432 4566789999888999999
Q ss_pred cCCCCcceeEecCCCCCHhHHHHHhhccccC
Q 003924 330 IDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360 (786)
Q Consensus 330 lDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~ 360 (786)
+|+|.+|.||.|++-.+.-+.+|.|||+.|-
T Consensus 542 VDVPaLDsViFf~pr~smVDIVQaVGRVMRK 572 (1518)
T COG4889 542 VDVPALDSVIFFDPRSSMVDIVQAVGRVMRK 572 (1518)
T ss_pred CCccccceEEEecCchhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999994
No 135
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.71 E-value=1.2e-16 Score=149.95 Aligned_cols=121 Identities=39% Similarity=0.664 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeccccc
Q 003924 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAAR 328 (786)
Q Consensus 249 ~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~ar 328 (786)
+.+...+..++......++++||||++..+++.++..|...+..+..+||+++..+|..++..|.++...|||+|+++++
T Consensus 11 ~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 11 DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 37888888888877656789999999999999999999998899999999999999999999999999999999999999
Q ss_pred ccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEE
Q 003924 329 GIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369 (786)
Q Consensus 329 GlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~l 369 (786)
|+|+|.+++||.+++|++...|.|++||++|.|+.|.++++
T Consensus 91 G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 91 GIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred CcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 99999999999999999999999999999999998888764
No 136
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.70 E-value=1.2e-14 Score=178.80 Aligned_cols=124 Identities=16% Similarity=0.166 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhc-cCCCcEEEEEcchhhHHHHHHHHHHcCCC--ceeecCCCCHHHHHHHHHHHhcCCcEEEEEeccc
Q 003924 250 EKHAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLE--PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (786)
Q Consensus 250 ~k~~~Ll~lL~~~~-~~~~k~IVF~~t~~~ae~l~~~L~~~g~~--v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~ 326 (786)
.....+...|.+.. ..++++|||+++....+.++..|...... ..++.-+++...|..+++.|+.++-.||++|...
T Consensus 735 ~~~~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sF 814 (928)
T PRK08074 735 EYIEEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSF 814 (928)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcc
Confidence 33455555555544 35679999999999999999999764321 2222223333457889999999988999999999
Q ss_pred ccccCCCC--cceeEecCCCC-CH-----------------------------hHHHHHhhccccCCCccEEEEEEecc
Q 003924 327 ARGIDIPL--LDNVINWDFPP-KP-----------------------------KIFVHRVGRAARAGRTGTAFSFVTSE 373 (786)
Q Consensus 327 arGlDIp~--v~~VI~~d~P~-s~-----------------------------~~~vQRvGR~gR~G~~G~ai~lv~~~ 373 (786)
.+|||+|+ +.+||...+|. +| ..+.|.+||+-|....--+++++++.
T Consensus 815 wEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 815 WEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred cCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 99999996 57888777663 11 12488999999986544456666654
No 137
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.69 E-value=3e-15 Score=176.05 Aligned_cols=279 Identities=10% Similarity=0.038 Sum_probs=175.9
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHH----HH
Q 003924 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF----EE 139 (786)
Q Consensus 64 vl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~----~~ 139 (786)
+..+.+|||||.+|+-.+-+.|.. |.++|||+|+..|+.|+.+.|+.... +-.+..++++.+..+.+ ..
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~-----Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~ 236 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA-----GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAV 236 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc-----CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHH
Confidence 334446999999999777666654 77899999999999999998886432 24577788877765443 34
Q ss_pred HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc-----CChHHHHHHHHhhcccCCceEEEeccCcHHHH
Q 003924 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-----MGFAEQLHKILGQLSENRQTLLFSATLPSALA 214 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~-----~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~ 214 (786)
..+...|||+|...+ ..++.++++||+||-|.-.- ..|...-..++.....+..+||.|||++-+..
T Consensus 237 ~~G~~~IViGtRSAv--------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 237 LRGQARVVVGTRSAV--------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred hCCCCcEEEEcceeE--------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 456789999998877 47899999999999996541 12344444444455568999999999775544
Q ss_pred HHHHhcCCCCcceeeccccccCCCceeeeeecchH-----------HHHHHHHHHHHHhccCCCcEEEEEcchhhHHHH-
Q 003924 215 EFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE-----------EKHAALLYMIREHISSDQQTLIFVSTKHHVEFL- 282 (786)
Q Consensus 215 ~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~-----------~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l- 282 (786)
..+..+ ....+................+..... .-...++..+++.+..+ ++|||+|.+-.+-.+
T Consensus 309 ~~~~~g--~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~g-qvll~lnRrGyap~l~ 385 (665)
T PRK14873 309 ALVESG--WAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHG-PVLVQVPRRGYVPSLA 385 (665)
T ss_pred HHHhcC--cceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcC-cEEEEecCCCCCCeeE
Confidence 444333 222121111111111111222222110 02246788888888888 999999865443332
Q ss_pred ----------------------------------------------------------HHHHHHc--CCCceeecCCCCH
Q 003924 283 ----------------------------------------------------------NVLFREE--GLEPSVCYGDMDQ 302 (786)
Q Consensus 283 ----------------------------------------------------------~~~L~~~--g~~v~~lhg~l~q 302 (786)
.+.|... +..+.. ++
T Consensus 386 C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r----~d- 460 (665)
T PRK14873 386 CARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVT----SG- 460 (665)
T ss_pred hhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEE----EC-
Confidence 1111111 001111 12
Q ss_pred HHHHHHHHHHhcCCcEEEEEec----ccccccCCCCcceeEecCC------C---C---CHhHHHHHhhccccCCCccEE
Q 003924 303 DARKIHVSRFRARKTMFLIVTD----VAARGIDIPLLDNVINWDF------P---P---KPKIFVHRVGRAARAGRTGTA 366 (786)
Q Consensus 303 ~~R~~~l~~F~~g~~~ILVaTd----v~arGlDIp~v~~VI~~d~------P---~---s~~~~vQRvGR~gR~G~~G~a 366 (786)
+..++..|. ++.+|||+|+ +++ ++++.|+..|. | . ....+.|.+||+||....|.+
T Consensus 461 --~d~~l~~~~-~~~~IlVGTqgaepm~~-----g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V 532 (665)
T PRK14873 461 --GDQVVDTVD-AGPALVVATPGAEPRVE-----GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQV 532 (665)
T ss_pred --hHHHHHhhc-cCCCEEEECCCCccccc-----CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEE
Confidence 234778886 5899999999 666 24566554442 2 1 234468999999999889999
Q ss_pred EEEEecc
Q 003924 367 FSFVTSE 373 (786)
Q Consensus 367 i~lv~~~ 373 (786)
++...++
T Consensus 533 ~iq~~p~ 539 (665)
T PRK14873 533 VVVAESS 539 (665)
T ss_pred EEEeCCC
Confidence 8876554
No 138
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.68 E-value=6.3e-16 Score=169.49 Aligned_cols=278 Identities=19% Similarity=0.244 Sum_probs=179.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l 140 (786)
+-++-+|||.||||.-++ +++.. ...+++.-|.|-||..+++.+...+ +.|.+++|.........
T Consensus 192 kIi~H~GPTNSGKTy~AL----qrl~~-----aksGvycGPLrLLA~EV~~r~na~g----ipCdL~TGeE~~~~~~~-- 256 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRAL----QRLKS-----AKSGVYCGPLRLLAHEVYDRLNALG----IPCDLLTGEERRFVLDN-- 256 (700)
T ss_pred eEEEEeCCCCCchhHHHH----HHHhh-----hccceecchHHHHHHHHHHHhhhcC----CCccccccceeeecCCC--
Confidence 346779999999998755 55553 3458999999999999999998876 78888888543222211
Q ss_pred cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcc-cCCceEEEeccCcHHHHHHHHh
Q 003924 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFAKA 219 (786)
Q Consensus 141 ~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~-~~~q~ll~SATl~~~l~~~~~~ 219 (786)
...+..+-||-+.+ .. -..+++.||||++.|.+......+...+--+. ....+. +- +.+..+.+.
T Consensus 257 ~~~a~hvScTVEM~--------sv-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLC---Ge--psvldlV~~ 322 (700)
T KOG0953|consen 257 GNPAQHVSCTVEMV--------SV-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLC---GE--PSVLDLVRK 322 (700)
T ss_pred CCcccceEEEEEEe--------ec-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhcc---CC--chHHHHHHH
Confidence 23467888886644 11 23578999999999988665555554433222 122111 11 222233332
Q ss_pred cC---CCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCC-cee
Q 003924 220 GL---RDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSV 295 (786)
Q Consensus 220 ~l---~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~-v~~ 295 (786)
.+ ++...++. .....+ -.-.+.++.-|.+. ..+.+|| |-+++....+...+...+.. +++
T Consensus 323 i~k~TGd~vev~~--YeRl~p-----------L~v~~~~~~sl~nl--k~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aV 386 (700)
T KOG0953|consen 323 ILKMTGDDVEVRE--YERLSP-----------LVVEETALGSLSNL--KPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAV 386 (700)
T ss_pred HHhhcCCeeEEEe--ecccCc-----------ceehhhhhhhhccC--CCCCeEE-EeehhhHHHHHHHHHHhcCcceEE
Confidence 22 22211111 111111 11112334444433 2344544 44677788888888887766 999
Q ss_pred ecCCCCHHHHHHHHHHHhc--CCcEEEEEecccccccCCCCcceeEecCC---------CCCHhHHHHHhhccccCCC--
Q 003924 296 CYGDMDQDARKIHVSRFRA--RKTMFLIVTDVAARGIDIPLLDNVINWDF---------PPKPKIFVHRVGRAARAGR-- 362 (786)
Q Consensus 296 lhg~l~q~~R~~~l~~F~~--g~~~ILVaTdv~arGlDIp~v~~VI~~d~---------P~s~~~~vQRvGR~gR~G~-- 362 (786)
|||+|+++.|..+-..|.+ ++++||||||+++.|+|+ +++.||.|++ |.+.....|..||+||.|.
T Consensus 387 IYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~ 465 (700)
T KOG0953|consen 387 IYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKY 465 (700)
T ss_pred EecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCC
Confidence 9999999999999999998 899999999999999999 5788888775 3567788999999999864
Q ss_pred -ccEEEEEEecccHHHHHHHHHHhcCC
Q 003924 363 -TGTAFSFVTSEDMAYLLDLHLFLSKP 388 (786)
Q Consensus 363 -~G~ai~lv~~~e~~~l~~l~~~l~~~ 388 (786)
.|.+-+|..+ |+.++ ...+..+
T Consensus 466 ~~G~vTtl~~e-DL~~L---~~~l~~p 488 (700)
T KOG0953|consen 466 PQGEVTTLHSE-DLKLL---KRILKRP 488 (700)
T ss_pred cCceEEEeeHh-hHHHH---HHHHhCC
Confidence 3555555443 34444 3445444
No 139
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.67 E-value=2.7e-14 Score=166.10 Aligned_cols=79 Identities=22% Similarity=0.168 Sum_probs=62.2
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcC----CcEEEEEecccccccCC--------
Q 003924 265 SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR----KTMFLIVTDVAARGIDI-------- 332 (786)
Q Consensus 265 ~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g----~~~ILVaTdv~arGlDI-------- 332 (786)
.++.++|.+.+...++.++..|...--....+.|..+ .+...++.|+.. ...||++|+.+..|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~ 546 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPD 546 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCC
Confidence 5779999999999999999999764334455666543 345578888874 78999999999999999
Q ss_pred C--CcceeEecCCCC
Q 003924 333 P--LLDNVINWDFPP 345 (786)
Q Consensus 333 p--~v~~VI~~d~P~ 345 (786)
| .+.+||..-+|.
T Consensus 547 ~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 547 KDNLLTDLIITCAPF 561 (636)
T ss_pred CCCcccEEEEEeCCC
Confidence 3 488899877773
No 140
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.66 E-value=2.3e-15 Score=141.52 Aligned_cols=144 Identities=42% Similarity=0.605 Sum_probs=114.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l 140 (786)
+.+++.++||+|||.+++.++.+.+..+ ...+++|++|+..|+.|+.+.+...... ++.+..+.++..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~---~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL---KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLL 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc---cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHh
Confidence 3689999999999999988888776552 3567999999999999999988877655 78888888887777666666
Q ss_pred cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccC
Q 003924 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (786)
Q Consensus 141 ~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl 209 (786)
..+++|+++|++.+...+... ......+++|||||+|.+....+...............+++++||||
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~-~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERL-KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcC-CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 778999999999998877653 34466788999999999887654444333444556788999999996
No 141
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.65 E-value=5.7e-15 Score=167.55 Aligned_cols=321 Identities=19% Similarity=0.267 Sum_probs=213.5
Q ss_pred CChHHHHHHHHHHH----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 45 ~ptpiQ~~aip~il----~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
++-|+|.-.+..+. .+-+.|+...+|-|||.- ++..+..|.+... +| .-|||||+..|-.+ ..+|..|+ .
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~-~g-pHLVVvPsSTleNW-lrEf~kwC--P 472 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGN-PG-PHLVVVPSSTLENW-LREFAKWC--P 472 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCC-CC-CcEEEecchhHHHH-HHHHHHhC--C
Confidence 58899999888654 334679999999999953 3344455554322 34 37999999877544 33344444 4
Q ss_pred CCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhc
Q 003924 121 DLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l 196 (786)
.++|-.++|........+.. ...++|+|+|+.-+..--.....|.-.++.|+|+||+|.|-+++ ...+..++ .+
T Consensus 473 sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~-SeRy~~LM-~I 550 (941)
T KOG0389|consen 473 SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRT-SERYKHLM-SI 550 (941)
T ss_pred ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccc-hHHHHHhc-cc
Confidence 58888888876544444332 23689999999755432222223445577899999999987764 23333333 33
Q ss_pred ccCCceEEEeccCc-HHHHHHHHh---------------------------------------------cCCCCccee--
Q 003924 197 SENRQTLLFSATLP-SALAEFAKA---------------------------------------------GLRDPHLVR-- 228 (786)
Q Consensus 197 ~~~~q~ll~SATl~-~~l~~~~~~---------------------------------------------~l~~p~~i~-- 228 (786)
+ ....||+|+||- +.+.+++.. .+ .|.+.+
T Consensus 551 ~-An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im-~PFILRR~ 628 (941)
T KOG0389|consen 551 N-ANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIM-KPFILRRL 628 (941)
T ss_pred c-ccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhh-hHHHHHHH
Confidence 3 445577777762 111121110 00 000000
Q ss_pred --------------e-----c-------------------ccccc--CCC--c-------------eeeeee--------
Q 003924 229 --------------L-----D-------------------VDTKI--SPD--L-------------KLAFFT-------- 245 (786)
Q Consensus 229 --------------~-----~-------------------~~~~~--~~~--l-------------~~~~~~-------- 245 (786)
+ . ..... ... + .-.++.
T Consensus 629 K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~ma 708 (941)
T KOG0389|consen 629 KSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKMA 708 (941)
T ss_pred HHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHHH
Confidence 0 0 00000 000 0 000000
Q ss_pred ------------------------------------------------cchHHHHHHHHHHHHHhccCCCcEEEEEcchh
Q 003924 246 ------------------------------------------------LRQEEKHAALLYMIREHISSDQQTLIFVSTKH 277 (786)
Q Consensus 246 ------------------------------------------------v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~ 277 (786)
.-...|...|..+|.+....+.+||||..--.
T Consensus 709 k~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFSQFTq 788 (941)
T KOG0389|consen 709 KRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFSQFTQ 788 (941)
T ss_pred HHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEeeHHHH
Confidence 00122666677777777678899999999888
Q ss_pred hHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC-c-EEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhh
Q 003924 278 HVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-T-MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVG 355 (786)
Q Consensus 278 ~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~-~-~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvG 355 (786)
..+-|...|...++....+.|+..-..|..+++.|...+ + -+|++|-+.+-|||+...++||.||+-.+|-.=.|.--
T Consensus 789 mLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAED 868 (941)
T KOG0389|consen 789 MLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAED 868 (941)
T ss_pred HHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHH
Confidence 889999999999999999999999999999999998875 3 45889999999999999999999999999999999999
Q ss_pred ccccCCCc--cEEEEEEecccH
Q 003924 356 RAARAGRT--GTAFSFVTSEDM 375 (786)
Q Consensus 356 R~gR~G~~--G~ai~lv~~~e~ 375 (786)
|++|.|+. -++|-|++.+-+
T Consensus 869 RcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 869 RCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred HHHhhCCcceeEEEEEEecCcH
Confidence 99999985 567888887654
No 142
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.64 E-value=2.3e-14 Score=168.33 Aligned_cols=343 Identities=19% Similarity=0.245 Sum_probs=225.7
Q ss_pred CCCccCCCCCHHHHHHHHH-------C-------CCC-------CChHHHHHHHHHHH--c--CCcEEEEcCCCChHHHH
Q 003924 22 SGGFESLNLSPNVFRAIKR-------K-------GYK-------VPTPIQRKTMPLIL--S--GADVVAMARTGSGKTAA 76 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~-------~-------g~~-------~ptpiQ~~aip~il--~--g~dvvl~a~TGSGKT~a 76 (786)
.|.+.--|||.+++....+ + .|. .++.||++.+..+. . +=+-|++..+|-|||+-
T Consensus 931 ~g~~~p~gls~eLl~~ke~erkFLeqlldpski~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQ 1010 (1549)
T KOG0392|consen 931 AGIPDPTGLSKELLASKEEERKFLEQLLDPSKIPEYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQ 1010 (1549)
T ss_pred cCCCCCccccHHHHHhHHHHHHHHHHhcCcccCCccccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHH
Confidence 4455556899998877432 1 133 45788999988754 2 34689999999999986
Q ss_pred HHHHHHHHHhhc---CC-CCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcH
Q 003924 77 FLVPMLQRLNQH---VP-QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPG 152 (786)
Q Consensus 77 fllpile~L~~~---~~-~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpg 152 (786)
.+..+..-.... +. -.....||+||+ .|+-.|..++.+|..+ +++...+|+-......+.-.++.+|||++++
T Consensus 1011 ticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYD 1087 (1549)
T KOG0392|consen 1011 TICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYD 1087 (1549)
T ss_pred HHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHH
Confidence 554443322221 11 123348999997 4888888888888766 7888888876665555555567899999999
Q ss_pred HHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCc-HHHHHHHHh---c--------
Q 003924 153 RLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP-SALAEFAKA---G-------- 220 (786)
Q Consensus 153 rll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~-~~l~~~~~~---~-------- 220 (786)
.+.+-+... .-..+.|+|+||-|-+-+ -...+...+..+..+.+ +.+|+||- +++.++... .
T Consensus 1088 v~RnD~d~l---~~~~wNYcVLDEGHVikN--~ktkl~kavkqL~a~hR-LILSGTPIQNnvleLWSLFdFLMPGfLGtE 1161 (1549)
T KOG0392|consen 1088 VVRNDVDYL---IKIDWNYCVLDEGHVIKN--SKTKLTKAVKQLRANHR-LILSGTPIQNNVLELWSLFDFLMPGFLGTE 1161 (1549)
T ss_pred HHHHHHHHH---HhcccceEEecCcceecc--hHHHHHHHHHHHhhcce-EEeeCCCcccCHHHHHHHHHHhcccccCcH
Confidence 887544332 223566999999998765 34566666666665554 44688861 111111110 0
Q ss_pred ------CCCC----------------------------------------------ccee-----ec-------------
Q 003924 221 ------LRDP----------------------------------------------HLVR-----LD------------- 230 (786)
Q Consensus 221 ------l~~p----------------------------------------------~~i~-----~~------------- 230 (786)
+..| .+|+ +.
T Consensus 1162 KqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~ 1241 (1549)
T KOG0392|consen 1162 KQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKK 1241 (1549)
T ss_pred HHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHH
Confidence 0000 0000 00
Q ss_pred --------c-ccccCCCc--eeee--------------------------------------eecchHHHHHHHHHHHHH
Q 003924 231 --------V-DTKISPDL--KLAF--------------------------------------FTLRQEEKHAALLYMIRE 261 (786)
Q Consensus 231 --------~-~~~~~~~l--~~~~--------------------------------------~~v~~~~k~~~Ll~lL~~ 261 (786)
. ....+... .+.| +.+....|..+|-.+|.+
T Consensus 1242 ~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~e 1321 (1549)
T KOG0392|consen 1242 AKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSE 1321 (1549)
T ss_pred hccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHH
Confidence 0 00000000 0000 000112255666666655
Q ss_pred hc-c-------------CCCcEEEEEcchhhHHHHHHHHHHc-CCCce--eecCCCCHHHHHHHHHHHhcC-CcEEEE-E
Q 003924 262 HI-S-------------SDQQTLIFVSTKHHVEFLNVLFREE-GLEPS--VCYGDMDQDARKIHVSRFRAR-KTMFLI-V 322 (786)
Q Consensus 262 ~~-~-------------~~~k~IVF~~t~~~ae~l~~~L~~~-g~~v~--~lhg~l~q~~R~~~l~~F~~g-~~~ILV-a 322 (786)
.- . .++++||||.-+...+.+.+.|-+. -..+. .+.|+.++.+|.++..+|.++ .++||+ +
T Consensus 1322 CGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLT 1401 (1549)
T KOG0392|consen 1322 CGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLT 1401 (1549)
T ss_pred hCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEe
Confidence 32 1 3678999999999999998766543 33344 789999999999999999999 678765 7
Q ss_pred ecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEE--EEEEecc
Q 003924 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSE 373 (786)
Q Consensus 323 Tdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~a--i~lv~~~ 373 (786)
|.|.+-|+|+.+.|.||+++--|+|-.-+|.+-|++|.|++-.+ |-|++..
T Consensus 1402 ThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrG 1454 (1549)
T KOG0392|consen 1402 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRG 1454 (1549)
T ss_pred eeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcc
Confidence 79999999999999999999999999999999999999997554 5566654
No 143
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.63 E-value=1.8e-14 Score=155.95 Aligned_cols=307 Identities=17% Similarity=0.199 Sum_probs=209.2
Q ss_pred CChHHHHHHHHHHH-cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCe
Q 003924 45 VPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123 (786)
Q Consensus 45 ~ptpiQ~~aip~il-~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~ 123 (786)
.+-|+|++.+...+ .|..+++...+|-|||+-++..+.....+ -..||+||.. |-..|.+.+..|......
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE------wplliVcPAs-vrftWa~al~r~lps~~p- 269 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE------WPLLIVCPAS-VRFTWAKALNRFLPSIHP- 269 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc------CcEEEEecHH-HhHHHHHHHHHhcccccc-
Confidence 45688999998766 57789999999999998766443333222 2389999976 446667777776544333
Q ss_pred EEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceE
Q 003924 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (786)
Q Consensus 124 v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~l 203 (786)
+.++.++..... .+...+.|.|.+++.+.++-. .+.-..+.+||+||+|.|-+.. ......++..+..-..+|
T Consensus 270 i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~~---~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~akhvI 342 (689)
T KOG1000|consen 270 IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLHD---ILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAKHVI 342 (689)
T ss_pred eEEEecccCCcc---ccccCCeEEEEEHHHHHHHHH---HHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhhheE
Confidence 455555544221 234457799999998765543 3445568899999999876543 444666666666677899
Q ss_pred EEeccC----cHH---------------HHHHHHhcCCCC-cceeec--------------------------cccccCC
Q 003924 204 LFSATL----PSA---------------LAEFAKAGLRDP-HLVRLD--------------------------VDTKISP 237 (786)
Q Consensus 204 l~SATl----~~~---------------l~~~~~~~l~~p-~~i~~~--------------------------~~~~~~~ 237 (786)
|+|+|+ |.+ ..+|+..|+.-- .-+..+ .-...++
T Consensus 343 LLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPp 422 (689)
T KOG1000|consen 343 LLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPP 422 (689)
T ss_pred EecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 999997 332 233443333210 000001 0011222
Q ss_pred Cceeeeeecch-------------------------------------HHHHHHHHHHHHH----hccCCCcEEEEEcch
Q 003924 238 DLKLAFFTLRQ-------------------------------------EEKHAALLYMIRE----HISSDQQTLIFVSTK 276 (786)
Q Consensus 238 ~l~~~~~~v~~-------------------------------------~~k~~~Ll~lL~~----~~~~~~k~IVF~~t~ 276 (786)
......+.+.. ..|.+.+.+.|.. .-..+.+.+|||...
T Consensus 423 Krr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~ 502 (689)
T KOG1000|consen 423 KRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQ 502 (689)
T ss_pred cceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhH
Confidence 22222222211 0133333333433 113567899999999
Q ss_pred hhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcC-CcEE-EEEecccccccCCCCcceeEecCCCCCHhHHHHHh
Q 003924 277 HHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR-KTMF-LIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRV 354 (786)
Q Consensus 277 ~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g-~~~I-LVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRv 354 (786)
...+-+...+.+.++..+.|.|+.+...|....+.|... ++.| +++-.+++.||++...++||+..+|++|..++|.-
T Consensus 503 ~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAE 582 (689)
T KOG1000|consen 503 IVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAE 582 (689)
T ss_pred HHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEech
Confidence 999999999999999999999999999999999999876 4555 45667889999999999999999999999999999
Q ss_pred hccccCCCccEE
Q 003924 355 GRAARAGRTGTA 366 (786)
Q Consensus 355 GR~gR~G~~G~a 366 (786)
.|++|.|+..-+
T Consensus 583 DRaHRiGQkssV 594 (689)
T KOG1000|consen 583 DRAHRIGQKSSV 594 (689)
T ss_pred hhhhhcccccee
Confidence 999999997544
No 144
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.62 E-value=1.7e-14 Score=157.72 Aligned_cols=343 Identities=14% Similarity=0.065 Sum_probs=234.0
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc-c
Q 003924 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG-R 118 (786)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~-~ 118 (786)
.+--.....+|.++|..+.+|+.+++.-.|.+||.+++.+.....+... .....+++.|+.+++....+-+.-.. .
T Consensus 281 ~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~---~~s~~~~~~~~~~~~~~~~~~~~V~~~~ 357 (1034)
T KOG4150|consen 281 KNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC---HATNSLLPSEMVEHLRNGSKGQVVHVEV 357 (1034)
T ss_pred cccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC---cccceecchhHHHHhhccCCceEEEEEe
Confidence 3444567889999999999999999999999999999988777655432 23457999999999876444221111 0
Q ss_pred CCCC--eEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhcc---CCCCCceeeEEeCCccccccC---ChHHHHH
Q 003924 119 YTDL--RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEADCLFGM---GFAEQLH 190 (786)
Q Consensus 119 ~~~l--~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~---~l~l~~l~~vV~DEah~l~~~---gf~~~l~ 190 (786)
...+ -++-.+.|.+..........+..++++.|..+...+.-.. ...+-...+++.||+|..... ....+|.
T Consensus 358 I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R 437 (1034)
T KOG4150|consen 358 IKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLR 437 (1034)
T ss_pred hhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHH
Confidence 1111 2333456666666555666789999999987654433210 122445568999999976542 1233444
Q ss_pred HHHhhc-----ccCCceEEEeccCcHHHHHHHHh-cCCCCcceeeccccccCCCceeeeee---------cchHHHHHHH
Q 003924 191 KILGQL-----SENRQTLLFSATLPSALAEFAKA-GLRDPHLVRLDVDTKISPDLKLAFFT---------LRQEEKHAAL 255 (786)
Q Consensus 191 ~Il~~l-----~~~~q~ll~SATl~~~l~~~~~~-~l~~p~~i~~~~~~~~~~~l~~~~~~---------v~~~~k~~~L 255 (786)
.++..+ ..+.|++-.|||+...+...... ++.+-.+|..|.... .-.+.+.. -..+.+....
T Consensus 438 ~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs---~~K~~V~WNP~~~P~~~~~~~~~i~E~ 514 (1034)
T KOG4150|consen 438 ALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPS---SEKLFVLWNPSAPPTSKSEKSSKVVEV 514 (1034)
T ss_pred HHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCC---ccceEEEeCCCCCCcchhhhhhHHHHH
Confidence 443332 23678899999986665433332 334444555443221 11111111 1123345555
Q ss_pred HHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc----CC----CceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccc
Q 003924 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----GL----EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (786)
Q Consensus 256 l~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~----g~----~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~a 327 (786)
..++.+.+..+-++|-||..+..|+.+....+.. +. .+....|+-..++|..+....-.|+..-+|+|++++
T Consensus 515 s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALE 594 (1034)
T KOG4150|consen 515 SHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALE 594 (1034)
T ss_pred HHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhh
Confidence 6666666667889999999999999887655543 21 234566888999999999999999999999999999
Q ss_pred cccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEE--ecccHHHHHHHHHHhcCC
Q 003924 328 RGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV--TSEDMAYLLDLHLFLSKP 388 (786)
Q Consensus 328 rGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv--~~~e~~~l~~l~~~l~~~ 388 (786)
-||||..+|.|++.++|.|...|.|..||+||..++..++.++ .|-|..|+..-...++.+
T Consensus 595 LGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~~HP~~l~~~p 657 (1034)
T KOG4150|consen 595 LGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYMSHPDKLFGSP 657 (1034)
T ss_pred hccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhhcCcHHHhCCC
Confidence 9999999999999999999999999999999998887765554 456777777665555543
No 145
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.62 E-value=1.1e-15 Score=131.29 Aligned_cols=78 Identities=33% Similarity=0.627 Sum_probs=75.6
Q ss_pred HHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCC
Q 003924 284 VLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361 (786)
Q Consensus 284 ~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G 361 (786)
++|+..++.+..+||++++.+|..+++.|.++...|||||+++++|||+|.+++||++++|+++..|.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999999986
No 146
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.60 E-value=8.5e-15 Score=145.67 Aligned_cols=153 Identities=23% Similarity=0.230 Sum_probs=104.1
Q ss_pred CChHHHHHHHHHHHc-------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 45 VPTPIQRKTMPLILS-------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 45 ~ptpiQ~~aip~il~-------g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
.|+|+|.+++..+.. .+.+++.+|||||||.+++..+.+... ++||++|+..|+.|+.+.+..+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~~~~ 74 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFDDFG 74 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHHHhh
Confidence 589999999999884 588999999999999988755554432 79999999999999999987665
Q ss_pred cCCCCeEEE-----------EEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhcc----------CCCCCceeeEEeCC
Q 003924 118 RYTDLRISL-----------LVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE----------DMSLKSVEYVVFDE 176 (786)
Q Consensus 118 ~~~~l~v~~-----------l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~----------~l~l~~l~~vV~DE 176 (786)
......... ..................+|+++|...|........ ........+||+||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DE 154 (184)
T PF04851_consen 75 SEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDE 154 (184)
T ss_dssp TTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEET
T ss_pred hhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEeh
Confidence 332111111 111111122223335678999999999987765311 12345678999999
Q ss_pred ccccccCChHHHHHHHHhhcccCCceEEEeccCc
Q 003924 177 ADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (786)
Q Consensus 177 ah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~ 210 (786)
||++.... .+..++. .....+|+|||||+
T Consensus 155 aH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 155 AHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp GGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred hhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99965432 1455555 45778999999985
No 147
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.58 E-value=1.2e-13 Score=164.01 Aligned_cols=327 Identities=22% Similarity=0.198 Sum_probs=190.4
Q ss_pred CChHHHHHHHHHHHc--------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003924 45 VPTPIQRKTMPLILS--------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (786)
Q Consensus 45 ~ptpiQ~~aip~il~--------g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l 116 (786)
.-..+|.+|+..+.. |--+|-||.||+|||++=.-.|. .|.. ...|.|..|-.-.|.|..|+-+.+++-
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImy-aLsd--~~~g~RfsiALGLRTLTLQTGda~r~r 484 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMY-ALRD--DKQGARFAIALGLRSLTLQTGHALKTR 484 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHH-HhCC--CCCCceEEEEccccceeccchHHHHHh
Confidence 446799999988774 22377899999999997553333 3332 246789999999999999999999886
Q ss_pred ccCCCCeEEEEEcCCChhHHHH-------------------------------------------HHcC--------CCC
Q 003924 117 GRYTDLRISLLVGGDSMESQFE-------------------------------------------ELAQ--------NPD 145 (786)
Q Consensus 117 ~~~~~l~v~~l~gg~~~~~~~~-------------------------------------------~l~~--------~~d 145 (786)
....+-..++++||....+.++ .+.. ..+
T Consensus 485 L~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ap 564 (1110)
T TIGR02562 485 LNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAP 564 (1110)
T ss_pred cCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCC
Confidence 6555556777777643332221 0000 256
Q ss_pred EEEECcHHHHHHHhhcc--CCCCC----ceeeEEeCCccccccCChHHHHHHHHhhcc-cCCceEEEeccCcHHHHHHH-
Q 003924 146 IIIATPGRLMHHLSEVE--DMSLK----SVEYVVFDEADCLFGMGFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFA- 217 (786)
Q Consensus 146 IiV~Tpgrll~~l~~~~--~l~l~----~l~~vV~DEah~l~~~gf~~~l~~Il~~l~-~~~q~ll~SATl~~~l~~~~- 217 (786)
|+|||++.++-...... ...+. .-+.|||||+|...... ...+..++..+. -+..++++|||+|+.+..-+
T Consensus 565 v~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~-~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 565 VLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPED-LPALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred eEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHH-HHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 99999999876652211 11111 12479999999754321 222333333221 36889999999998866533
Q ss_pred HhcC----------CCC---cceee---cccc----------------------------ccCCCceeeeeecchH----
Q 003924 218 KAGL----------RDP---HLVRL---DVDT----------------------------KISPDLKLAFFTLRQE---- 249 (786)
Q Consensus 218 ~~~l----------~~p---~~i~~---~~~~----------------------------~~~~~l~~~~~~v~~~---- 249 (786)
.+|. +.| ..|.. |... ..+....-.+..++..
T Consensus 644 ~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~ 723 (1110)
T TIGR02562 644 RAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPREN 723 (1110)
T ss_pred HHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCcccch
Confidence 3321 211 11111 1000 0000001111122211
Q ss_pred -HHHHHHHHHHHHhc-----------c-CCCc---EEEEEcchhhHHHHHHHHHHc----C--CCceeecCCCCHHHHHH
Q 003924 250 -EKHAALLYMIREHI-----------S-SDQQ---TLIFVSTKHHVEFLNVLFREE----G--LEPSVCYGDMDQDARKI 307 (786)
Q Consensus 250 -~k~~~Ll~lL~~~~-----------~-~~~k---~IVF~~t~~~ae~l~~~L~~~----g--~~v~~lhg~l~q~~R~~ 307 (786)
.....+...+.+.. . .+.+ .+|-++++..+-.++..|-.. + +.+.++|+......|..
T Consensus 724 ~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~ 803 (1110)
T TIGR02562 724 ESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSY 803 (1110)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHH
Confidence 12222222222211 1 2222 256677777666666655443 3 34667899887777765
Q ss_pred HHHHH---h-------------------c----CCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCC
Q 003924 308 HVSRF---R-------------------A----RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAG 361 (786)
Q Consensus 308 ~l~~F---~-------------------~----g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G 361 (786)
+.+.. - + +...|+|+|+|++.|+|+. .+++|- -|.+....+||+||+.|.|
T Consensus 804 ~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~R~~ 880 (1110)
T TIGR02562 804 IERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAIA--DPSSMRSIIQLAGRVNRHR 880 (1110)
T ss_pred HHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeeee--ccCcHHHHHHHhhcccccc
Confidence 44332 1 1 3668999999999999994 566663 3677899999999999987
Q ss_pred Cc--cEEEEEEecccHHHH
Q 003924 362 RT--GTAFSFVTSEDMAYL 378 (786)
Q Consensus 362 ~~--G~ai~lv~~~e~~~l 378 (786)
.. +..-+++-...+.++
T Consensus 881 ~~~~~~~N~~i~~~N~r~l 899 (1110)
T TIGR02562 881 LEKVQQPNIVILQWNYRYL 899 (1110)
T ss_pred cCCCCCCcEEEeHhHHHHh
Confidence 53 333344445555555
No 148
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.58 E-value=7.4e-14 Score=164.40 Aligned_cols=318 Identities=21% Similarity=0.318 Sum_probs=225.0
Q ss_pred CCChHHHHHHHHHHHcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHH-HHHHHccCCC
Q 003924 44 KVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYTD 121 (786)
Q Consensus 44 ~~ptpiQ~~aip~il~g-~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~-~l~~l~~~~~ 121 (786)
....|+|.++++.+... .+|++.+|+|||||+++-+.++. +....+++++.|.-+.+.-++. |-+.|+...|
T Consensus 1142 ~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G 1215 (1674)
T KOG0951|consen 1142 QDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLG 1215 (1674)
T ss_pred cccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------CccceEEEEecchHHHHHHHHHHHHHhhccccC
Confidence 34488999999887765 56999999999999998876664 3456789999999999987665 6778998899
Q ss_pred CeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCC-----hHHHHHHHHhhc
Q 003924 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-----FAEQLHKILGQL 196 (786)
Q Consensus 122 l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~g-----f~~~l~~Il~~l 196 (786)
+.+..++|..+.+.. +....+|+|+||+++-.+ + ..+.+++.|.||+|.+.+.. ....+..|...+
T Consensus 1216 ~~~~~l~ge~s~~lk---l~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~ 1286 (1674)
T KOG0951|consen 1216 LRIVKLTGETSLDLK---LLQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQL 1286 (1674)
T ss_pred ceEEecCCccccchH---HhhhcceEEechhHHHHH-h-----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHH
Confidence 999999988776654 334578999999998543 2 46788999999999887422 112266677777
Q ss_pred ccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHH---HHH----HHHHHHHHhccCCCcE
Q 003924 197 SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE---KHA----ALLYMIREHISSDQQT 269 (786)
Q Consensus 197 ~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~---k~~----~Ll~lL~~~~~~~~k~ 269 (786)
.+..+++.+|..+.+. .++ .++....++.+.....+.|. ...+..+.... ... .....+..+...+.+.
T Consensus 1287 ~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~~R~~Pl-~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~ 1362 (1674)
T KOG0951|consen 1287 EKKIRVVALSSSLANA-RDL--IGASSSGVFNFSPSVRPVPL-EIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPA 1362 (1674)
T ss_pred HhheeEEEeehhhccc-hhh--ccccccceeecCcccCCCce-eEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCe
Confidence 7888999999887654 233 45555566666666555552 22233332222 211 2233344455578899
Q ss_pred EEEEcchhhHHHHHHHHHHc----------------------CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccc
Q 003924 270 LIFVSTKHHVEFLNVLFREE----------------------GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (786)
Q Consensus 270 IVF~~t~~~ae~l~~~L~~~----------------------g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~a 327 (786)
+||++++++|.+++..|-.. .+.+.+-|-+|+..+...+-.-|..|.+.|+|...- .
T Consensus 1363 ~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~ 1441 (1674)
T KOG0951|consen 1363 IVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-C 1441 (1674)
T ss_pred EEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-c
Confidence 99999999998776544321 133333478899888888999999999999998755 5
Q ss_pred cccCCCCcceeE-----ecC------CCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCC
Q 003924 328 RGIDIPLLDNVI-----NWD------FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP 388 (786)
Q Consensus 328 rGlDIp~v~~VI-----~~d------~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~ 388 (786)
.|+-... +.|| .|| .+-+.....|.+|++.|+ |.|+++.......|+.. |+-.+
T Consensus 1442 ~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~---~k~vi~~~~~~k~yykk---fl~e~ 1506 (1674)
T KOG0951|consen 1442 YGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGA---GKCVIMCHTPKKEYYKK---FLYEP 1506 (1674)
T ss_pred ccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcCC---ccEEEEecCchHHHHHH---hccCc
Confidence 6666543 3333 122 345578899999999995 78999998887777665 55444
No 149
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=5.9e-13 Score=157.57 Aligned_cols=125 Identities=23% Similarity=0.276 Sum_probs=105.7
Q ss_pred chHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC-cEEEEEecc
Q 003924 247 RQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-TMFLIVTDV 325 (786)
Q Consensus 247 ~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~-~~ILVaTdv 325 (786)
...+|..+++..+.+....+.||||-+.++...+.++.+|...|++..+|+......+-..+- ..|+ -.|-|||++
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA---~AG~~GaVTIATNM 685 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVA---EAGQPGTVTIATNM 685 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHH---hcCCCCcEEEeccC
Confidence 356788999999988888999999999999999999999999999988888775544433332 2454 359999999
Q ss_pred cccccCCC--------CcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEeccc
Q 003924 326 AARGIDIP--------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (786)
Q Consensus 326 ~arGlDIp--------~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e 374 (786)
|+||.||. +--+||....|.|...-.|-.||+||.|.+|.+..|++-+|
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 99999997 23478888899999999999999999999999999999765
No 150
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.56 E-value=2e-12 Score=154.68 Aligned_cols=121 Identities=17% Similarity=0.282 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHh----cCCcEEEEEecc
Q 003924 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFR----ARKTMFLIVTDV 325 (786)
Q Consensus 250 ~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~----~g~~~ILVaTdv 325 (786)
+-...+...|.+.+...+.+|||+++....+.++..|....-....++|.. .+..+++.|+ .++..||++|..
T Consensus 518 ~~~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~s 594 (697)
T PRK11747 518 AHTAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQS 594 (697)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEecc
Confidence 345566666665555566799999999999999998875322334556643 4566776676 467889999999
Q ss_pred cccccCCCC--cceeEecCCCC----CHh--------------------------HHHHHhhccccCCCccEEEEEEecc
Q 003924 326 AARGIDIPL--LDNVINWDFPP----KPK--------------------------IFVHRVGRAARAGRTGTAFSFVTSE 373 (786)
Q Consensus 326 ~arGlDIp~--v~~VI~~d~P~----s~~--------------------------~~vQRvGR~gR~G~~G~ai~lv~~~ 373 (786)
...|||+|+ +.+||...+|. +|- .+.|.+||.-|....--+++++++.
T Consensus 595 f~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~R 674 (697)
T PRK11747 595 FAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDRR 674 (697)
T ss_pred ccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEccc
Confidence 999999996 78898877762 111 1478889999975543345555554
No 151
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.51 E-value=4.3e-12 Score=152.09 Aligned_cols=120 Identities=19% Similarity=0.263 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhcc-CCCcEEEEEcchhhHHHHHHHHHHcCCC-ceeecCCCCHHHHHHHHHHHhcCCc-EEEEEecccc
Q 003924 251 KHAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMDQDARKIHVSRFRARKT-MFLIVTDVAA 327 (786)
Q Consensus 251 k~~~Ll~lL~~~~~-~~~k~IVF~~t~~~ae~l~~~L~~~g~~-v~~lhg~l~q~~R~~~l~~F~~g~~-~ILVaTdv~a 327 (786)
-...+...+.+.+. .++++|||+++....+.+...+...... ....+|..+ +...++.|..+.- .+||+|..++
T Consensus 463 ~~~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~ 539 (654)
T COG1199 463 LLAKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFW 539 (654)
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeecccc
Confidence 44444444444332 3458999999999999999999887653 333444433 3478888887655 9999999999
Q ss_pred cccCCCC--cceeEecCCCC------------------------------CHhHHHHHhhccccCCCccEEEEEEecc
Q 003924 328 RGIDIPL--LDNVINWDFPP------------------------------KPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (786)
Q Consensus 328 rGlDIp~--v~~VI~~d~P~------------------------------s~~~~vQRvGR~gR~G~~G~ai~lv~~~ 373 (786)
+|||+|+ +.+||...+|. -...+.|.+||+-|.-..--++++++..
T Consensus 540 EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~R 617 (654)
T COG1199 540 EGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDKR 617 (654)
T ss_pred CcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEeccc
Confidence 9999995 57788777662 2233699999999965544444555543
No 152
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.47 E-value=2.1e-11 Score=135.68 Aligned_cols=288 Identities=20% Similarity=0.205 Sum_probs=197.4
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHccCC-------------CCe------EEEEEcCCChhHHHHHHc-----------
Q 003924 92 GGVRALILSPTRDLALQTLKFTKELGRYT-------------DLR------ISLLVGGDSMESQFEELA----------- 141 (786)
Q Consensus 92 ~g~r~LIL~PtreLa~Q~~~~l~~l~~~~-------------~l~------v~~l~gg~~~~~~~~~l~----------- 141 (786)
..+++|||+|+|..|..+.+.+-.+.... ++. ...-.........+..+.
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 35799999999999999988776654331 100 000000011112222111
Q ss_pred --------------CCCCEEEECcHHHHHHHhh----ccC-CCCCceeeEEeCCcccccc--CChHHHHHHHHhhccc--
Q 003924 142 --------------QNPDIIIATPGRLMHHLSE----VED-MSLKSVEYVVFDEADCLFG--MGFAEQLHKILGQLSE-- 198 (786)
Q Consensus 142 --------------~~~dIiV~Tpgrll~~l~~----~~~-l~l~~l~~vV~DEah~l~~--~gf~~~l~~Il~~l~~-- 198 (786)
-++|||||+|=-|...+.. ..+ -.|++++++|+|.||.++- |.+...+...+...|.
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCC
Confidence 1479999999888766653 112 2389999999999998774 3334444444555443
Q ss_pred -------------------CCceEEEeccCcHHHHHHHHhcCCCCc-ceeecc--c-----cccCCCceeeeeecch---
Q 003924 199 -------------------NRQTLLFSATLPSALAEFAKAGLRDPH-LVRLDV--D-----TKISPDLKLAFFTLRQ--- 248 (786)
Q Consensus 199 -------------------~~q~ll~SATl~~~l~~~~~~~l~~p~-~i~~~~--~-----~~~~~~l~~~~~~v~~--- 248 (786)
-+|+|+||+...+.+..+....+.|.. .+++.. . ......+.+.|.-++.
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 259999999999999999888666542 222221 1 2334566677654332
Q ss_pred ----HHHHHHHHH----HHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEE
Q 003924 249 ----EEKHAALLY----MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320 (786)
Q Consensus 249 ----~~k~~~Ll~----lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~IL 320 (786)
+.+...... .|.. -.....||||+++.-+--.+..+|.+.++..+.++-..++.+-..+-..|.+|+..||
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~-~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iL 354 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKR-DSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPIL 354 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhh-ccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEE
Confidence 222222222 2221 1245789999999999999999999999999999999999988888999999999999
Q ss_pred EEeccc--ccccCCCCcceeEecCCCCCHhHHHHHhhccccCCC------ccEEEEEEecccHHHHHH
Q 003924 321 IVTDVA--ARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR------TGTAFSFVTSEDMAYLLD 380 (786)
Q Consensus 321 VaTdv~--arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~------~G~ai~lv~~~e~~~l~~ 380 (786)
+.|--+ =+=..|.++.+||.|++|..|.-|...+.-.+.... ...|.++++.-|...|..
T Consensus 355 L~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LEr 422 (442)
T PF06862_consen 355 LYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLER 422 (442)
T ss_pred EEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHH
Confidence 999653 356678889999999999999999888866655433 578999999877655544
No 153
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.45 E-value=2.3e-13 Score=116.70 Aligned_cols=81 Identities=38% Similarity=0.647 Sum_probs=77.2
Q ss_pred HHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccC
Q 003924 281 FLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA 360 (786)
Q Consensus 281 ~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~ 360 (786)
.++..|...++.+..+||+++..+|..++..|..+...|||+|+++++|+|+|.+++||.+++|+++..|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 46778888899999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred C
Q 003924 361 G 361 (786)
Q Consensus 361 G 361 (786)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 5
No 154
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.45 E-value=2.4e-11 Score=146.26 Aligned_cols=74 Identities=22% Similarity=0.212 Sum_probs=61.3
Q ss_pred CCCCCChHHHHHHHHHHH----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003924 41 KGYKVPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il----~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l 116 (786)
..|..++|.|.+.+..+. .+..+++.+|||+|||++.|.|.+..+.... ...+++|++.|..-..|+.++++.+
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--EVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--ccccEEEEcccchHHHHHHHHHHhh
Confidence 357777999998887655 5788999999999999999999998765431 2368999999999999999988874
No 155
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.43 E-value=1.2e-12 Score=152.28 Aligned_cols=317 Identities=18% Similarity=0.224 Sum_probs=205.5
Q ss_pred CChHHHHHHHHHHHc----CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 45 VPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 45 ~ptpiQ~~aip~il~----g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.+.+||...+..+.+ +-+-++...||-|||.. .+.++..|.++....|+ -|||||+-.|..+..++- .++ .
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~~~GP-~LvivPlstL~NW~~Ef~-kWa--P 468 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQMQGP-FLIIVPLSTLVNWSSEFP-KWA--P 468 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcccCCC-eEEeccccccCCchhhcc-ccc--c
Confidence 788999999987663 24588999999999976 45566677766555565 699999999987755432 222 3
Q ss_pred CCeEEEEEcCCChhHH--HHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhccc
Q 003924 121 DLRISLLVGGDSMESQ--FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE 198 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~--~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~ 198 (786)
.+..+...|.-..... -....+.++|+++|++.+.. ....|.--++.|+||||.|+|... ...+...+...-.
T Consensus 469 Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t~y~ 543 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNTHYR 543 (1157)
T ss_pred ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccch--hhHHHHHhhcccc
Confidence 4555544443222111 12334789999999998754 212233345679999999998752 2344444332222
Q ss_pred CCceEEEeccCcH----HHHHHHH-----------------------hc----------------------------CC-
Q 003924 199 NRQTLLFSATLPS----ALAEFAK-----------------------AG----------------------------LR- 222 (786)
Q Consensus 199 ~~q~ll~SATl~~----~l~~~~~-----------------------~~----------------------------l~- 222 (786)
....+|+++|+.. ++..++. .+ +.
T Consensus 544 ~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRRlKk 623 (1157)
T KOG0386|consen 544 AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRRLKK 623 (1157)
T ss_pred chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHhhhH
Confidence 3334555555410 0000000 00 00
Q ss_pred -----CC-------------------------cceeecc--ccccC----------------C----Ccee----ee---
Q 003924 223 -----DP-------------------------HLVRLDV--DTKIS----------------P----DLKL----AF--- 243 (786)
Q Consensus 223 -----~p-------------------------~~i~~~~--~~~~~----------------~----~l~~----~~--- 243 (786)
.| ....++. ..... | ++.. .+
T Consensus 624 eVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~ 703 (1157)
T KOG0386|consen 624 EVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIK 703 (1157)
T ss_pred HHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccccccccChh
Confidence 00 0000000 00000 0 0000 00
Q ss_pred eecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCc---EEE
Q 003924 244 FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT---MFL 320 (786)
Q Consensus 244 ~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~---~IL 320 (786)
..++...|...|-.+|-.....++++|.||........+..+|.-.++....+.|....++|-..+..|..-.. .+|
T Consensus 704 dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~Fl 783 (1157)
T KOG0386|consen 704 DLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFL 783 (1157)
T ss_pred HHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCceeeee
Confidence 01122335555555555555679999999999888899999999999999999999999999999999987543 467
Q ss_pred EEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEe
Q 003924 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371 (786)
Q Consensus 321 VaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~ 371 (786)
++|-+.+.|+|+..+++||.||.-|+|..+.|+.-|+.|.|+.-.+-++..
T Consensus 784 lstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl 834 (1157)
T KOG0386|consen 784 LSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRL 834 (1157)
T ss_pred eeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeee
Confidence 899999999999999999999999999999999999999998765544443
No 156
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.37 E-value=3.5e-10 Score=139.01 Aligned_cols=297 Identities=19% Similarity=0.169 Sum_probs=165.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l 140 (786)
+..+++.-||||||++.+ .+...|... ...+.++||+.+++|-.|+.+.+..++....... ...+..+..+.+
T Consensus 274 ~~G~IWHtqGSGKTlTm~-~~A~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk~~l 346 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMF-KLARLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELKELL 346 (962)
T ss_pred CceEEEeecCCchHHHHH-HHHHHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHHHHH
Confidence 459999999999998744 333444433 4567899999999999999999999875443322 344555555666
Q ss_pred cCC-CCEEEECcHHHHHHHhhccCC-CCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHH-H
Q 003924 141 AQN-PDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEF-A 217 (786)
Q Consensus 141 ~~~-~dIiV~Tpgrll~~l~~~~~l-~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~-~ 217 (786)
... -.|||||...|-..+...... .-..--+||+|||||.- .|+... .+-..++ +...++||+||--.-..- .
T Consensus 347 ~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ-~G~~~~--~~~~~~~-~a~~~gFTGTPi~~~d~~tt 422 (962)
T COG0610 347 EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQ-YGELAK--LLKKALK-KAIFIGFTGTPIFKEDKDTT 422 (962)
T ss_pred hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcc-ccHHHH--HHHHHhc-cceEEEeeCCccccccccch
Confidence 644 489999999998777653111 11222379999999943 342222 2233333 588999999983211111 0
Q ss_pred HhcCCCCcceeeccccccCC--Cceeeeeec-c-----------------------h--------------------HHH
Q 003924 218 KAGLRDPHLVRLDVDTKISP--DLKLAFFTL-R-----------------------Q--------------------EEK 251 (786)
Q Consensus 218 ~~~l~~p~~i~~~~~~~~~~--~l~~~~~~v-~-----------------------~--------------------~~k 251 (786)
...++++.. .......+.+ .+...|... . . ...
T Consensus 423 ~~~fg~ylh-~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~r~ 501 (962)
T COG0610 423 KDVFGDYLH-TYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLAVRL 501 (962)
T ss_pred hhhhcceeE-EEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcchHHH
Confidence 111111110 0000000000 001111000 0 0 000
Q ss_pred H---HHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCC----------c-eee------------cCCCCHHHH
Q 003924 252 H---AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE----------P-SVC------------YGDMDQDAR 305 (786)
Q Consensus 252 ~---~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~----------v-~~l------------hg~l~q~~R 305 (786)
. ..+............++++.|+++..+..+++........ + .+. |... ....
T Consensus 502 ~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~ 580 (962)
T COG0610 502 IRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKL-KDEK 580 (962)
T ss_pred HHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHH-HHHH
Confidence 0 0111111111123557777777777444444332221100 0 000 1111 1122
Q ss_pred HHHHHHH--hcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccC--C--CccEEEEEEe
Q 003924 306 KIHVSRF--RARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA--G--RTGTAFSFVT 371 (786)
Q Consensus 306 ~~~l~~F--~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~--G--~~G~ai~lv~ 371 (786)
.....+| .....++||++|++-+|+|.|.+..+. +|-|.....++|.+.||.|. + ..|..+.|+.
T Consensus 581 ~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmY-vDK~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 581 KDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLY-VDKPLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhhhcCcCCCCCEEEEEccccccCCccccceEE-eccccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 2333443 345789999999999999999886555 79999999999999999996 3 2366666666
No 157
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.33 E-value=7.2e-11 Score=128.15 Aligned_cols=109 Identities=13% Similarity=0.223 Sum_probs=92.9
Q ss_pred CcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcC-CcEEEE-EecccccccCCCCcceeEecCCC
Q 003924 267 QQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR-KTMFLI-VTDVAARGIDIPLLDNVINWDFP 344 (786)
Q Consensus 267 ~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g-~~~ILV-aTdv~arGlDIp~v~~VI~~d~P 344 (786)
-+.|||...-...+.+.-.|.+.|+.|+-+-|+|++.+|...++.|.+. .+.|++ +-.+.+.-+|+.....|+.+|+-
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 3678887777778888888888999999999999999999999999986 567655 55788888999999999999999
Q ss_pred CCHhHHHHHhhccccCCC--ccEEEEEEecccH
Q 003924 345 PKPKIFVHRVGRAARAGR--TGTAFSFVTSEDM 375 (786)
Q Consensus 345 ~s~~~~vQRvGR~gR~G~--~G~ai~lv~~~e~ 375 (786)
|+|..-.|.-.|..|.|+ +-.++-|+.++.+
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 999999999999999887 4567777777644
No 158
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.28 E-value=2.8e-10 Score=132.84 Aligned_cols=289 Identities=15% Similarity=0.178 Sum_probs=183.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcC
Q 003924 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQ 142 (786)
Q Consensus 63 vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~ 142 (786)
.++.||+|||||.+.+-++-+.+.. .+.++|+|+-++.|+.+++..++..+- .++..-.-.++..+. ..
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~----~~~~VLvVShRrSL~~sL~~rf~~~~l-~gFv~Y~d~~~~~i~------~~ 120 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKN----PDKSVLVVSHRRSLTKSLAERFKKAGL-SGFVNYLDSDDYIID------GR 120 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccC----CCCeEEEEEhHHHHHHHHHHHHhhcCC-Ccceeeecccccccc------cc
Confidence 6789999999999876655554432 467899999999999999998876431 122211111111100 12
Q ss_pred CCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChH------HH-HHHHHhhcccCCceEEEeccCcHHHHH
Q 003924 143 NPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA------EQ-LHKILGQLSENRQTLLFSATLPSALAE 215 (786)
Q Consensus 143 ~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~------~~-l~~Il~~l~~~~q~ll~SATl~~~l~~ 215 (786)
..+-++++.+.|..+. .-.+.++++|||||+-.++..-|. .. +..+...+.....+|++-||+.....+
T Consensus 121 ~~~rLivqIdSL~R~~----~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvd 196 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLD----GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVD 196 (824)
T ss_pred ccCeEEEEehhhhhcc----cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHH
Confidence 3567788877775433 223677999999999876643222 12 222334455677899999999999999
Q ss_pred HHHhcCCCCcceeeccccccCC--Cceeeee------------e---------------------cchHHHHHHHHHHHH
Q 003924 216 FAKAGLRDPHLVRLDVDTKISP--DLKLAFF------------T---------------------LRQEEKHAALLYMIR 260 (786)
Q Consensus 216 ~~~~~l~~p~~i~~~~~~~~~~--~l~~~~~------------~---------------------v~~~~k~~~Ll~lL~ 260 (786)
|+...-.+..+..+..+..... .....+. . .............|.
T Consensus 197 Fl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~ 276 (824)
T PF02399_consen 197 FLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELL 276 (824)
T ss_pred HHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHH
Confidence 9988654433222211110000 0000000 0 000011223445555
Q ss_pred HhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCC--ccee
Q 003924 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPL--LDNV 338 (786)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~--v~~V 338 (786)
..+..+..+-||++|...++.++.+.......+..++|.-+..+. +. =++++|+|-|+++..|+++.. .+-|
T Consensus 277 ~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~--W~~~~VviYT~~itvG~Sf~~~HF~~~ 350 (824)
T PF02399_consen 277 ARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ES--WKKYDVVIYTPVITVGLSFEEKHFDSM 350 (824)
T ss_pred HHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cc--ccceeEEEEeceEEEEeccchhhceEE
Confidence 556678999999999999999999999988888888876555522 22 257899999999999999974 3434
Q ss_pred EecCCC----CCHhHHHHHhhccccCCCccEEEEEEecc
Q 003924 339 INWDFP----PKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (786)
Q Consensus 339 I~~d~P----~s~~~~vQRvGR~gR~G~~G~ai~lv~~~ 373 (786)
.-|=-| .+.....|.+||+-.-. ....+++++..
T Consensus 351 f~yvk~~~~gpd~~s~~Q~lgRvR~l~-~~ei~v~~d~~ 388 (824)
T PF02399_consen 351 FAYVKPMSYGPDMVSVYQMLGRVRSLL-DNEIYVYIDAS 388 (824)
T ss_pred EEEecCCCCCCcHHHHHHHHHHHHhhc-cCeEEEEEecc
Confidence 444223 34556899999996653 46777777664
No 159
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.27 E-value=1.7e-10 Score=129.62 Aligned_cols=123 Identities=20% Similarity=0.296 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcE-EEEEecccccc
Q 003924 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM-FLIVTDVAARG 329 (786)
Q Consensus 251 k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~-ILVaTdv~arG 329 (786)
|+..|-.+|......++++|+|+..-...+.+..+|.-.++....+.|+..-.+|..++.+|...++- +|++|.+.+-|
T Consensus 1029 KL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388|consen 1029 KLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred ceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccc
Confidence 55555566666666789999999999999999999999999999999999999999999999987654 57899999999
Q ss_pred cCCCCcceeEecCCCCCHhHHHHHhhccccCCCc--cEEEEEEecc
Q 003924 330 IDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT--GTAFSFVTSE 373 (786)
Q Consensus 330 lDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~--G~ai~lv~~~ 373 (786)
||+...|.||+||.-|+|..-.|...|+.|-|+. -++|-+++..
T Consensus 1109 INLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rg 1154 (1185)
T KOG0388|consen 1109 INLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRG 1154 (1185)
T ss_pred ccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccc
Confidence 9999999999999999999999999999999985 4556666654
No 160
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.23 E-value=3.4e-09 Score=124.66 Aligned_cols=318 Identities=23% Similarity=0.272 Sum_probs=201.3
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCC
Q 003924 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (786)
Q Consensus 42 g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~ 121 (786)
|+ .|..+|.-. .+.-+..-++...||=|||++..+|+.-... .|..+.++...--||.--++++..+-.+.|
T Consensus 78 g~-~~~dVQliG--~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL-----~gkgVhvVTvNdYLA~RDae~m~~l~~~LG 149 (822)
T COG0653 78 GM-RHFDVQLLG--GIVLHLGDIAEMRTGEGKTLVATLPAYLNAL-----AGKGVHVVTVNDYLARRDAEWMGPLYEFLG 149 (822)
T ss_pred CC-ChhhHHHhh--hhhhcCCceeeeecCCchHHHHHHHHHHHhc-----CCCCcEEeeehHHhhhhCHHHHHHHHHHcC
Confidence 54 455555544 4455556888999999999999999864433 355688999999999999999999999999
Q ss_pred CeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-HHHHhh-----ccCCCCCceeeEEeCCcccccc---------CC--
Q 003924 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSE-----VEDMSLKSVEYVVFDEADCLFG---------MG-- 184 (786)
Q Consensus 122 l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~-----~~~l~l~~l~~vV~DEah~l~~---------~g-- 184 (786)
+.+.++..+.+.++...+. .+||..+|-..| ++++.. ....-...+.+.|+||+|.++- .|
T Consensus 150 lsvG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARtPLiISG~~ 227 (822)
T COG0653 150 LSVGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEARTPLIISGPA 227 (822)
T ss_pred CceeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeeccccceeeeccc
Confidence 9999999999877766655 589999998765 222222 1112244577999999997651 11
Q ss_pred -----hHHHHHHHHhhcccC--------CceEEEec--------------------------------------------
Q 003924 185 -----FAEQLHKILGQLSEN--------RQTLLFSA-------------------------------------------- 207 (786)
Q Consensus 185 -----f~~~l~~Il~~l~~~--------~q~ll~SA-------------------------------------------- 207 (786)
....+..++..+... .+.+.++-
T Consensus 228 ~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l~~~D~dYI 307 (822)
T COG0653 228 EDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHILFFRDVDYI 307 (822)
T ss_pred ccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHHhhcCCeeE
Confidence 233333333322211 11111111
Q ss_pred -----------------------------------------------------------------cCcHHHHHHHHhcCC
Q 003924 208 -----------------------------------------------------------------TLPSALAEFAKAGLR 222 (786)
Q Consensus 208 -----------------------------------------------------------------Tl~~~l~~~~~~~l~ 222 (786)
|--.+..+|...|.-
T Consensus 308 Vrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY~l 387 (822)
T COG0653 308 VRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIYGL 387 (822)
T ss_pred EecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhccCC
Confidence 111111111111100
Q ss_pred CCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCH
Q 003924 223 DPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (786)
Q Consensus 223 ~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q 302 (786)
+-..+ .........-....+......|..+++..+.+....+.|+||-+.+....+.+..+|.+.|++..++...-..
T Consensus 388 ~vv~i--PTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~ 465 (822)
T COG0653 388 DVVVI--PTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHA 465 (822)
T ss_pred ceeec--cCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccHH
Confidence 00000 0000000000001112234568888999988888899999999999999999999999999998888776553
Q ss_pred HHHHHHHHHHhcCCc-EEEEEecccccccCCCCcc-----------eeEecCCCCCHhHHHHHhhccccCCCccEEEEEE
Q 003924 303 DARKIHVSRFRARKT-MFLIVTDVAARGIDIPLLD-----------NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFV 370 (786)
Q Consensus 303 ~~R~~~l~~F~~g~~-~ILVaTdv~arGlDIp~v~-----------~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv 370 (786)
.+=..+ . ..|.. .|-|+|++|+||-||.--. +||-...-.|-..--|--||+||.|.+|.+..|+
T Consensus 466 ~EA~Ii--a-~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~S~F~l 542 (822)
T COG0653 466 REAEII--A-QAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSSRFYL 542 (822)
T ss_pred HHHHHH--h-hcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcchhhhhh
Confidence 332222 2 23433 5889999999999997433 2443333334444458899999999999998888
Q ss_pred eccc
Q 003924 371 TSED 374 (786)
Q Consensus 371 ~~~e 374 (786)
+-+|
T Consensus 543 SleD 546 (822)
T COG0653 543 SLED 546 (822)
T ss_pred hhHH
Confidence 8754
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.22 E-value=6.5e-10 Score=137.41 Aligned_cols=125 Identities=21% Similarity=0.331 Sum_probs=108.0
Q ss_pred HHHHHHHHHH-HHhccCCC--cEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcC--CcEEEEEec
Q 003924 250 EKHAALLYMI-REHISSDQ--QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRAR--KTMFLIVTD 324 (786)
Q Consensus 250 ~k~~~Ll~lL-~~~~~~~~--k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g--~~~ILVaTd 324 (786)
.|...+..++ ......+. ++|||+........+...|...++....++|+++...|...++.|.++ ..-+|++|.
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~k 771 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLK 771 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEec
Confidence 4566666777 56666677 999999999999999999999998899999999999999999999996 445677888
Q ss_pred ccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEE--EEEEeccc
Q 003924 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSED 374 (786)
Q Consensus 325 v~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~a--i~lv~~~e 374 (786)
+++.|+|+...++||.||+.+++....|...|+.|.|+...+ |-+++.+.
T Consensus 772 agg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 772 AGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred ccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 999999999999999999999999999999999999987554 55555554
No 162
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.21 E-value=8.8e-10 Score=129.23 Aligned_cols=112 Identities=21% Similarity=0.350 Sum_probs=98.7
Q ss_pred cCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC--cEEEEEecccccccCCCCcceeEec
Q 003924 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK--TMFLIVTDVAARGIDIPLLDNVINW 341 (786)
Q Consensus 264 ~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~--~~ILVaTdv~arGlDIp~v~~VI~~ 341 (786)
..++++|||+......+.|..+|.-.|+....|.|...-++|...+++|+... ...|++|...+.|||+.+.|.||+|
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFY 1353 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFY 1353 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEe
Confidence 35889999999999999999999999999999999999999999999999875 4678899999999999999999999
Q ss_pred CCCCCHhHHHHHhhccccCCCc--cEEEEEEecccH
Q 003924 342 DFPPKPKIFVHRVGRAARAGRT--GTAFSFVTSEDM 375 (786)
Q Consensus 342 d~P~s~~~~vQRvGR~gR~G~~--G~ai~lv~~~e~ 375 (786)
|--|++..-.|.--|+.|.|+. -..|-|++..-+
T Consensus 1354 DsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TI 1389 (1958)
T KOG0391|consen 1354 DSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTI 1389 (1958)
T ss_pred cCCCCchhhhHHHHHHHhhcCccceEEEEeeccchH
Confidence 9999999888888888888775 455777777543
No 163
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.19 E-value=3.5e-11 Score=113.54 Aligned_cols=138 Identities=22% Similarity=0.285 Sum_probs=82.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~ 139 (786)
|+-.++...+|+|||--.+.-++..... .+.++|||.|||.++..+.+.++.. ++++. ..-.. . .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~----~~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~-~----~ 68 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK----RRLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARM-R----T 68 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH----TT--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS-------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH----ccCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeee-c----c
Confidence 4557889999999998655544443333 3678999999999999988877543 23322 11110 0 1
Q ss_pred HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcc--cCCceEEEeccCcHHHHHH
Q 003924 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS--ENRQTLLFSATLPSALAEF 216 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~--~~~q~ll~SATl~~~l~~~ 216 (786)
..++.-|-|+|.+.+.+.+.+ .....++++||+||||-+..... ...-++..+. ....+|++|||+|.....|
T Consensus 69 ~~g~~~i~vMc~at~~~~~~~--p~~~~~yd~II~DEcH~~Dp~sI--A~rg~l~~~~~~g~~~~i~mTATPPG~~~~f 143 (148)
T PF07652_consen 69 HFGSSIIDVMCHATYGHFLLN--PCRLKNYDVIIMDECHFTDPTSI--AARGYLRELAESGEAKVIFMTATPPGSEDEF 143 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHT--SSCTTS-SEEEECTTT--SHHHH--HHHHHHHHHHHTTS-EEEEEESS-TT---SS
T ss_pred ccCCCcccccccHHHHHHhcC--cccccCccEEEEeccccCCHHHH--hhheeHHHhhhccCeeEEEEeCCCCCCCCCC
Confidence 235667999999999888765 55678999999999997543221 1111222222 2468999999999875443
No 164
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.17 E-value=2e-10 Score=123.68 Aligned_cols=153 Identities=22% Similarity=0.223 Sum_probs=94.7
Q ss_pred HHHHHHHHHHc-------------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCC-CCCeEEEEEcCcHHHHHHHHHHHH
Q 003924 49 IQRKTMPLILS-------------GADVVAMARTGSGKTAAFLVPMLQRLNQHVP-QGGVRALILSPTRDLALQTLKFTK 114 (786)
Q Consensus 49 iQ~~aip~il~-------------g~dvvl~a~TGSGKT~afllpile~L~~~~~-~~g~r~LIL~PtreLa~Q~~~~l~ 114 (786)
+|..++..++. .+.++++..+|+|||...+..+. .+..... .....+|||||. .+..||..++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 57777776632 35699999999999988665444 3333211 112359999999 77789999999
Q ss_pred HHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHH-----HHHhhccCCCCCceeeEEeCCccccccCChHHHH
Q 003924 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLM-----HHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189 (786)
Q Consensus 115 ~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll-----~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l 189 (786)
.+.....+++..+.|...............+|+|+|++.+. ..... +.--..++||+||+|.+-+.. ...
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~~~~vIvDEaH~~k~~~--s~~ 153 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKED---LKQIKWDRVIVDEAHRLKNKD--SKR 153 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSEEEEEEETTGGGGTTTT--SHH
T ss_pred cccccccccccccccccccccccccccccceeeeccccccccccccccccc---cccccceeEEEeccccccccc--ccc
Confidence 88765567777776655122222233457899999999998 22221 222348899999999985432 344
Q ss_pred HHHHhhcccCCceEEEeccC
Q 003924 190 HKILGQLSENRQTLLFSATL 209 (786)
Q Consensus 190 ~~Il~~l~~~~q~ll~SATl 209 (786)
...+..+. ....+++||||
T Consensus 154 ~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 154 YKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HHHHHCCC-ECEEEEE-SS-
T ss_pred cccccccc-cceEEeecccc
Confidence 44444455 67789999997
No 165
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.15 E-value=1.5e-09 Score=122.71 Aligned_cols=119 Identities=15% Similarity=0.192 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhcc-CCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhc--CCcEEEE-Eecc
Q 003924 250 EKHAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA--RKTMFLI-VTDV 325 (786)
Q Consensus 250 ~k~~~Ll~lL~~~~~-~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~--g~~~ILV-aTdv 325 (786)
.|+..++..+...+. ...+++|...=.....-+...|...|.....+||.....+|..+++.|.. |..+|++ +-.+
T Consensus 729 ~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtA 808 (901)
T KOG4439|consen 729 CKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTA 808 (901)
T ss_pred hHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEcc
Confidence 344445555544322 23333333222223344456677788889999999999999999999975 4456654 5577
Q ss_pred cccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEE
Q 003924 326 AARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFS 368 (786)
Q Consensus 326 ~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~ 368 (786)
.+.|||+-+.+++|..|+-|+|..-.|..-|+-|.|+.-.+++
T Consensus 809 GGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~GQkK~V~I 851 (901)
T KOG4439|consen 809 GGVGLNLIGANHLILVDLHWNPALEQQACDRIYRMGQKKDVFI 851 (901)
T ss_pred CcceeeecccceEEEEecccCHHHHHHHHHHHHHhcccCceEE
Confidence 8899999999999999999999999999999999998765543
No 166
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=3.7e-09 Score=116.30 Aligned_cols=335 Identities=19% Similarity=0.235 Sum_probs=209.3
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEc-CCCChH--HHHHHHHHHHHHhhcC------------C--------------CCCe
Q 003924 44 KVPTPIQRKTMPLILSGADVVAMA-RTGSGK--TAAFLVPMLQRLNQHV------------P--------------QGGV 94 (786)
Q Consensus 44 ~~ptpiQ~~aip~il~g~dvvl~a-~TGSGK--T~afllpile~L~~~~------------~--------------~~g~ 94 (786)
..+|+.|.+.+-.+.+.+|++..- ..+.|+ +..|.+-++.++.... . -..+
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 478999999999888999987532 234555 4567777776653210 0 1247
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHccCCCCe-EE--------EEEcC--------CChhHHHHHH-----------------
Q 003924 95 RALILSPTRDLALQTLKFTKELGRYTDLR-IS--------LLVGG--------DSMESQFEEL----------------- 140 (786)
Q Consensus 95 r~LIL~PtreLa~Q~~~~l~~l~~~~~l~-v~--------~l~gg--------~~~~~~~~~l----------------- 140 (786)
++|||||+|+-|..+.+.+..+..+.+-. +. --++| ....+.++.+
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 89999999999999999887774433210 00 01111 0111111111
Q ss_pred --------cCCCCEEEECcHHHHHHHhhcc----CC-CCCceeeEEeCCccccccCChHHHHHHHHhh---cccC-----
Q 003924 141 --------AQNPDIIIATPGRLMHHLSEVE----DM-SLKSVEYVVFDEADCLFGMGFAEQLHKILGQ---LSEN----- 199 (786)
Q Consensus 141 --------~~~~dIiV~Tpgrll~~l~~~~----~l-~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~---l~~~----- 199 (786)
....||+||+|=-|.-++...+ ++ .+++++++|||-||.++..++. .+..|+.. +|..
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCcccccCCC
Confidence 1258999999977766665211 12 2789999999999988754432 33333333 3322
Q ss_pred ----------------CceEEEeccCcHHHHHHHHhcCCCCcc-eeec--ccc-cc---CCCceeee--eecc-----hH
Q 003924 200 ----------------RQTLLFSATLPSALAEFAKAGLRDPHL-VRLD--VDT-KI---SPDLKLAF--FTLR-----QE 249 (786)
Q Consensus 200 ----------------~q~ll~SATl~~~l~~~~~~~l~~p~~-i~~~--~~~-~~---~~~l~~~~--~~v~-----~~ 249 (786)
+|+++||+-..+.+..+...++.|..- +... ... .+ ...+.+.| +.+. ++
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 489999998887777777766654311 1110 000 00 01112222 1111 12
Q ss_pred HHHHHHHHHHH-Hhc-cCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeccc-
Q 003924 250 EKHAALLYMIR-EHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA- 326 (786)
Q Consensus 250 ~k~~~Ll~lL~-~~~-~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~- 326 (786)
.+......-|. ... .....+||+.++.-.--.+..++.+..+..+.||.-.++..-..+-+-|-.|...||+.|--+
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~h 613 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAH 613 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhh
Confidence 22222222111 111 123468999999999999999999998888888776666655566677999999999999754
Q ss_pred -ccccCCCCcceeEecCCCCCHhHH---HHHhhccccCCC----ccEEEEEEecccHHHHH
Q 003924 327 -ARGIDIPLLDNVINWDFPPKPKIF---VHRVGRAARAGR----TGTAFSFVTSEDMAYLL 379 (786)
Q Consensus 327 -arGlDIp~v~~VI~~d~P~s~~~~---vQRvGR~gR~G~----~G~ai~lv~~~e~~~l~ 379 (786)
-+-.+|.+|..||.|.+|..|.-| +...+|+.-.|+ .-.|.++++.-|.-.|.
T Consensus 614 ffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le 674 (698)
T KOG2340|consen 614 FFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLE 674 (698)
T ss_pred hhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHH
Confidence 477899999999999999999877 455566654443 24778888876654443
No 167
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.03 E-value=3.2e-09 Score=114.26 Aligned_cols=74 Identities=27% Similarity=0.317 Sum_probs=58.4
Q ss_pred CCCCChHHHHHHH----HHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCC-CCeEEEEEcCcHHHHHHHHHHHHHH
Q 003924 42 GYKVPTPIQRKTM----PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKEL 116 (786)
Q Consensus 42 g~~~ptpiQ~~ai----p~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~-~g~r~LIL~PtreLa~Q~~~~l~~l 116 (786)
.| .|+|.|.+.+ ..+..|..+++.||||+|||+++++|++..+...... .+.+++|+++|..+..|....++.+
T Consensus 6 Py-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 6 PY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 45 5799999944 4555788999999999999999999998776653221 2347999999999999987777654
No 168
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.03 E-value=3.2e-09 Score=114.26 Aligned_cols=74 Identities=27% Similarity=0.317 Sum_probs=58.4
Q ss_pred CCCCChHHHHHHH----HHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCC-CCeEEEEEcCcHHHHHHHHHHHHHH
Q 003924 42 GYKVPTPIQRKTM----PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKEL 116 (786)
Q Consensus 42 g~~~ptpiQ~~ai----p~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~-~g~r~LIL~PtreLa~Q~~~~l~~l 116 (786)
.| .|+|.|.+.+ ..+..|..+++.||||+|||+++++|++..+...... .+.+++|+++|..+..|....++.+
T Consensus 6 Py-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 6 PY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 45 5799999944 4555788999999999999999999998776653221 2347999999999999987777654
No 169
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=98.91 E-value=2e-08 Score=116.08 Aligned_cols=358 Identities=17% Similarity=0.157 Sum_probs=201.5
Q ss_pred HHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHH-HHHccCCCCeEEEEEcCCCh
Q 003924 55 PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLRISLLVGGDSM 133 (786)
Q Consensus 55 p~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l-~~l~~~~~l~v~~l~gg~~~ 133 (786)
..+..+.-+++.+.||+|||.-|.--+++.+.+.+......+++.-|+|.-+.-+++.+ ++-+...+-.|..-+.-++
T Consensus 388 q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~S- 466 (1282)
T KOG0921|consen 388 QAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDS- 466 (1282)
T ss_pred HHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccc-
Confidence 44445667889999999999999988999888765544455777789998888887643 3333222222211111111
Q ss_pred hHHHHHHc-CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccC-ChHHHHHHHHhhcccCCceEEEeccCcH
Q 003924 134 ESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLPS 211 (786)
Q Consensus 134 ~~~~~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~-gf~~~l~~Il~~l~~~~q~ll~SATl~~ 211 (786)
+.. ..-.|+.||-|-++..+.. -+.-+.++|+||.|...-. .|...+..=+........++++|||+..
T Consensus 467 -----a~prpyg~i~fctvgvllr~~e~----glrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdT 537 (1282)
T KOG0921|consen 467 -----ATPRPYGSIMFCTVGVLLRMMEN----GLRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDT 537 (1282)
T ss_pred -----cccccccceeeeccchhhhhhhh----cccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccch
Confidence 011 1234899999999888765 2456779999999975422 2332222222222234445555555433
Q ss_pred HH--------------------HHHHHhcCCCCcceee------------ccccccCC------Cce--eee--------
Q 003924 212 AL--------------------AEFAKAGLRDPHLVRL------------DVDTKISP------DLK--LAF-------- 243 (786)
Q Consensus 212 ~l--------------------~~~~~~~l~~p~~i~~------------~~~~~~~~------~l~--~~~-------- 243 (786)
.+ ..|....+..+..... +......+ +.. ..+
T Consensus 538 d~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am 617 (1282)
T KOG0921|consen 538 DLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAM 617 (1282)
T ss_pred hhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhh
Confidence 21 1111111111100000 00000000 000 000
Q ss_pred eecchHHHHHHHHHHHHHhc---cCCCcEEEEEcchhhHHHHHHHHHHc-------CCCceeecCCCCHHHHHHHHHHHh
Q 003924 244 FTLRQEEKHAALLYMIREHI---SSDQQTLIFVSTKHHVEFLNVLFREE-------GLEPSVCYGDMDQDARKIHVSRFR 313 (786)
Q Consensus 244 ~~v~~~~k~~~Ll~lL~~~~---~~~~k~IVF~~t~~~ae~l~~~L~~~-------g~~v~~lhg~l~q~~R~~~l~~F~ 313 (786)
...........|++.+...+ .-.+-++||.+.-.....|...|... .+.+..+|+.+...+...+.+...
T Consensus 618 ~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p 697 (1282)
T KOG0921|consen 618 SRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVP 697 (1282)
T ss_pred hcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccc
Confidence 00000111122233222222 22457899999999988888877643 467888899888888788888888
Q ss_pred cCCcEEEEEecccccccCCCCcceeEecCC------------------CCCHhHHHHHhhccccCCCccEEEEEEecccH
Q 003924 314 ARKTMFLIVTDVAARGIDIPLLDNVINWDF------------------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (786)
Q Consensus 314 ~g~~~ILVaTdv~arGlDIp~v~~VI~~d~------------------P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~ 375 (786)
.|..+++++|.++...+-|.++..||+.+. -.+....+||-||++|. ++|.|+.+.+..-.
T Consensus 698 ~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~arF 776 (1282)
T KOG0921|consen 698 EGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRARF 776 (1282)
T ss_pred ccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHHHH
Confidence 899999999999999998888777774332 14556779999999996 78888887765433
Q ss_pred HHHHHHHHHhcCCCCCCCCHHHHHhhhhhHHHHHHHHHhcCCccccccchhHHH
Q 003924 376 AYLLDLHLFLSKPIRAAPSEEEVLLDMDGVMSKIDQAIANGETIYGRFPQTVID 429 (786)
Q Consensus 376 ~~l~~l~~~l~~~~~~~p~~e~~~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~ 429 (786)
..++...-..+...|..+..+.-.-..+..|...+... +++.|..+..
T Consensus 777 ---~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~ka---l~~~p~dav~ 824 (1282)
T KOG0921|consen 777 ---EALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKA---LQPPPYDAVI 824 (1282)
T ss_pred ---HHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhc---cCCCchhhcc
Confidence 22332333344445555554443333333444444332 3444544433
No 170
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.91 E-value=6.3e-08 Score=112.27 Aligned_cols=119 Identities=21% Similarity=0.297 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc----------------------CCCceeecCCCCHHHHHHH
Q 003924 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----------------------GLEPSVCYGDMDQDARKIH 308 (786)
Q Consensus 251 k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~----------------------g~~v~~lhg~l~q~~R~~~ 308 (786)
|+-.|+.+|...-.-+.++|||..+....+.+..+|.-. |.....|.|+.....|...
T Consensus 1127 KmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~ 1206 (1567)
T KOG1015|consen 1127 KMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKW 1206 (1567)
T ss_pred ceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHH
Confidence 444566666655556889999999998888888887631 4556788999999999999
Q ss_pred HHHHhcC----CcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEE
Q 003924 309 VSRFRAR----KTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSF 369 (786)
Q Consensus 309 l~~F~~g----~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~l 369 (786)
...|..- ..-.||+|.+.+-|||+-..+.||.||.-|+|.--+|.+=|+-|.|+.-.||++
T Consensus 1207 ~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1207 AEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 9999863 234799999999999999999999999999999999999999999997666554
No 171
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.60 E-value=5.2e-07 Score=95.24 Aligned_cols=131 Identities=19% Similarity=0.274 Sum_probs=96.8
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.|+ .|++.|.-++=.+..|+ |+...||=|||++..+|++-... .|..+-|++.+..||..=++++..|...+
T Consensus 74 ~g~-~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL-----~G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNAL-----QGKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp TS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHT-----TSS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred cCC-cccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHH-----hcCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 566 89999999997776665 99999999999988877765544 36679999999999999999999999999
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHH-HHHhhc----cCC-CCCceeeEEeCCccccc
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLM-HHLSEV----EDM-SLKSVEYVVFDEADCLF 181 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll-~~l~~~----~~l-~l~~l~~vV~DEah~l~ 181 (786)
|+.+.+++++.+.++..... .++|+.+|...|. ++|... ... ....+.++||||+|.++
T Consensus 146 Glsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 146 GLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp T--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred hhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999988765544443 3689999998764 344331 111 14678899999999766
No 172
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.50 E-value=1.3e-06 Score=105.40 Aligned_cols=143 Identities=19% Similarity=0.307 Sum_probs=89.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHH-----H-Hcc---CCCCeEEEEEcCC-
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK-----E-LGR---YTDLRISLLVGGD- 131 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~-----~-l~~---~~~l~v~~l~gg~- 131 (786)
++.+.++||+|||.+|+-.|++..... .-.+.||+||+.++-..+.+.+. . |.. ...+....+.++.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~---~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~ 137 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKY---GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDK 137 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHc---CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcc
Confidence 688999999999999998888776553 24579999999999998887655 1 211 1224444444332
Q ss_pred ------ChhHHHHHHcC-------CCCEEEECcHHHHHHHh-h-c------cC--CCCCce----eeEEeCCccccccCC
Q 003924 132 ------SMESQFEELAQ-------NPDIIIATPGRLMHHLS-E-V------ED--MSLKSV----EYVVFDEADCLFGMG 184 (786)
Q Consensus 132 ------~~~~~~~~l~~-------~~dIiV~Tpgrll~~l~-~-~------~~--l~l~~l----~~vV~DEah~l~~~g 184 (786)
+.......... ...|+|+|.+.|..-.. . . +. .++..+ -+||+||.|++...+
T Consensus 138 ~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~~ 217 (986)
T PRK15483 138 KKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRDN 217 (986)
T ss_pred cccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcch
Confidence 22333333322 46899999998854221 0 0 00 111111 379999999985422
Q ss_pred hHHHHHHHHhhcccCCceEEEeccCcH
Q 003924 185 FAEQLHKILGQLSENRQTLLFSATLPS 211 (786)
Q Consensus 185 f~~~l~~Il~~l~~~~q~ll~SATl~~ 211 (786)
..+..| ..+.+.+ +|.||||.+.
T Consensus 218 --k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 218 --KFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred --HHHHHH-HhcCccc-EEEEeeecCC
Confidence 234444 4444444 6779999986
No 173
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.23 E-value=7.9e-05 Score=87.28 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=55.7
Q ss_pred CCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccC--CCcc-----------EEEEEEecccHHHHHHH
Q 003924 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARA--GRTG-----------TAFSFVTSEDMAYLLDL 381 (786)
Q Consensus 315 g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~--G~~G-----------~ai~lv~~~e~~~l~~l 381 (786)
...+.|++--++-.|.|-|+|=.++-+....|...=.|-|||.-|- .+.| .-.+++...+..++..|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~L 561 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKAL 561 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHH
Confidence 3578999999999999999999898888888888999999999983 2222 22445566677777777
Q ss_pred HHHhcC
Q 003924 382 HLFLSK 387 (786)
Q Consensus 382 ~~~l~~ 387 (786)
+..+..
T Consensus 562 qkEI~~ 567 (985)
T COG3587 562 QKEIND 567 (985)
T ss_pred HHHHHH
Confidence 655443
No 174
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.23 E-value=2.9e-05 Score=93.84 Aligned_cols=69 Identities=13% Similarity=0.058 Sum_probs=54.4
Q ss_pred CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcH
Q 003924 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (786)
Q Consensus 142 ~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~ 211 (786)
....|+++||..|..-+.. +.+++..+..|||||||++.+..-...+..+...-.+..-+.+|||.|..
T Consensus 6 ~~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred hcCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 3567999999988665554 47999999999999999998766556666666665667779999999853
No 175
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.20 E-value=7.4e-06 Score=83.30 Aligned_cols=124 Identities=22% Similarity=0.283 Sum_probs=75.1
Q ss_pred CChHHHHHHHHHHHcCC--cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCC
Q 003924 45 VPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~--dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l 122 (786)
++++-|+.++..++... -+++.|+.|+|||.+ +..+...+.. .+.++++++||...+..+.+.+. +
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~----~g~~v~~~apT~~Aa~~L~~~~~-------~ 68 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA----AGKRVIGLAPTNKAAKELREKTG-------I 68 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH----TT--EEEEESSHHHHHHHHHHHT-------S
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh----CCCeEEEECCcHHHHHHHHHhhC-------c
Confidence 47899999999998654 477889999999975 4445555554 36789999999988887555411 1
Q ss_pred eEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhcc---CCCCCceeeEEeCCccccccCChHHHHHHHHhhccc-
Q 003924 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE---DMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE- 198 (786)
Q Consensus 123 ~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~---~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~- 198 (786)
. ..|-.+++....... ...+....+||||||-.+. ...+..++..++.
T Consensus 69 ~------------------------a~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~~~~ 120 (196)
T PF13604_consen 69 E------------------------AQTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLAKKS 120 (196)
T ss_dssp -------------------------EEEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS-T-
T ss_pred c------------------------hhhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHHHhc
Confidence 1 233333322221100 0114556799999998765 3567777777766
Q ss_pred CCceEEEecc
Q 003924 199 NRQTLLFSAT 208 (786)
Q Consensus 199 ~~q~ll~SAT 208 (786)
+.++|++-=+
T Consensus 121 ~~klilvGD~ 130 (196)
T PF13604_consen 121 GAKLILVGDP 130 (196)
T ss_dssp T-EEEEEE-T
T ss_pred CCEEEEECCc
Confidence 5666665443
No 176
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.20 E-value=3.9e-06 Score=86.54 Aligned_cols=69 Identities=23% Similarity=0.342 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHcCCc-EEEEcCCCChHHHHHHHHHHHHHhh----cCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 003924 46 PTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQ----HVPQGGVRALILSPTRDLALQTLKFTKE 115 (786)
Q Consensus 46 ptpiQ~~aip~il~g~d-vvl~a~TGSGKT~afllpile~L~~----~~~~~g~r~LIL~PtreLa~Q~~~~l~~ 115 (786)
+.+.|..|+..++.... +++.||+|+|||.+.. -++..+.. .....+.++||++|+..-+.++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67899999999999998 9999999999996533 34444411 1123577899999999999998887766
No 177
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.14 E-value=1.8e-06 Score=102.23 Aligned_cols=132 Identities=20% Similarity=0.276 Sum_probs=97.1
Q ss_pred ChHHHHHHHHHHH-cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeE
Q 003924 46 PTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (786)
Q Consensus 46 ptpiQ~~aip~il-~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v 124 (786)
..|+|...+..+. -..++++-+|||||||.+|-+.++..+... ++.+++|++|-.+|+....+.........|+++
T Consensus 928 fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~---p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ 1004 (1230)
T KOG0952|consen 928 FNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYY---PGSKVVYIAPDKALVKERSDDWSKRDELPGIKV 1004 (1230)
T ss_pred cCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccC---CCccEEEEcCCchhhcccccchhhhcccCCcee
Confidence 3445555443222 235689999999999999999888777664 567899999999999887765544333348889
Q ss_pred EEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCC-CCCceeeEEeCCccccccC
Q 003924 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGM 183 (786)
Q Consensus 125 ~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l-~l~~l~~vV~DEah~l~~~ 183 (786)
.-+.|....+ ... -..++|+|+||++...+...++.. .+.++..+|+||.|.+.+.
T Consensus 1005 ie~tgd~~pd--~~~-v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1005 IELTGDVTPD--VKA-VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred EeccCccCCC--hhh-eecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 8888876655 222 246899999999998877754333 3788999999999987753
No 178
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=98.07 E-value=0.00035 Score=83.32 Aligned_cols=67 Identities=19% Similarity=0.230 Sum_probs=52.9
Q ss_pred CCChHHHHHHHHHHHcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 003924 44 KVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (786)
Q Consensus 44 ~~ptpiQ~~aip~il~g-~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~ 115 (786)
..+.+.|..|+..++.. ..+++.||+|+|||.+..-.+.+.+ . .|.++|+++||..-+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~-~----~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLV-K----RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHH-H----cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 35799999999999887 5688999999999976544333333 2 256899999999999998887765
No 179
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.07 E-value=0.00026 Score=81.65 Aligned_cols=107 Identities=18% Similarity=0.275 Sum_probs=88.1
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHcCCC------------------ceeecCCCCHHHHHHHHHHHhcCC---cEEEEEec
Q 003924 266 DQQTLIFVSTKHHVEFLNVLFREEGLE------------------PSVCYGDMDQDARKIHVSRFRARK---TMFLIVTD 324 (786)
Q Consensus 266 ~~k~IVF~~t~~~ae~l~~~L~~~g~~------------------v~~lhg~l~q~~R~~~l~~F~~g~---~~ILVaTd 324 (786)
+.++|||.......+.+.++|.+..+. ...+.|..+..+|+..+++|..-- .-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 567899999999999999999865322 234678888899999999998642 35888999
Q ss_pred ccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEec
Q 003924 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372 (786)
Q Consensus 325 v~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~ 372 (786)
...-|||+=...-+|.||.-+++-.-.|.+-|+-|.|+.-.|+++-.-
T Consensus 799 ag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlV 846 (1387)
T KOG1016|consen 799 AGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLV 846 (1387)
T ss_pred cccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeeh
Confidence 999999998888888899999999999999999999998777666444
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.05 E-value=9.7e-06 Score=82.42 Aligned_cols=146 Identities=21% Similarity=0.294 Sum_probs=77.6
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHH---HH-HHHccC
Q 003924 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK---FT-KELGRY 119 (786)
Q Consensus 44 ~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~---~l-~~l~~~ 119 (786)
...|+.|..++..++...-+++.||.|||||+.++..+++.+... .-.+++|+-|..+....+-- .+ .++...
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g---~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~ 79 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG---EYDKIIITRPPVEAGEDLGFLPGDLEEKMEPY 79 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT---S-SEEEEEE-S--TT----SS---------TT
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC---CCcEEEEEecCCCCccccccCCCCHHHHHHHH
Confidence 356889999999999888899999999999999998888888763 34467888887653111100 00 000000
Q ss_pred CC-C-e-EEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhc
Q 003924 120 TD-L-R-ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL 196 (786)
Q Consensus 120 ~~-l-~-v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l 196 (786)
.. + . ...+.+.. ....+.....|-+.++..+ ....+++ .+||+|||+.+. ..++..++.++
T Consensus 80 ~~p~~d~l~~~~~~~----~~~~~~~~~~Ie~~~~~~i-------RGrt~~~-~~iIvDEaQN~t----~~~~k~ilTR~ 143 (205)
T PF02562_consen 80 LRPIYDALEELFGKE----KLEELIQNGKIEIEPLAFI-------RGRTFDN-AFIIVDEAQNLT----PEELKMILTRI 143 (205)
T ss_dssp THHHHHHHTTTS-TT----CHHHHHHTTSEEEEEGGGG-------TT--B-S-EEEEE-SGGG------HHHHHHHHTTB
T ss_pred HHHHHHHHHHHhChH----hHHHHhhcCeEEEEehhhh-------cCccccc-eEEEEecccCCC----HHHHHHHHccc
Confidence 00 0 0 00000111 1222333456767665433 1334443 799999999864 57899999999
Q ss_pred ccCCceEEEecc
Q 003924 197 SENRQTLLFSAT 208 (786)
Q Consensus 197 ~~~~q~ll~SAT 208 (786)
..+++++++.-.
T Consensus 144 g~~skii~~GD~ 155 (205)
T PF02562_consen 144 GEGSKIIITGDP 155 (205)
T ss_dssp -TT-EEEEEE--
T ss_pred CCCcEEEEecCc
Confidence 988888876543
No 181
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.94 E-value=0.00017 Score=82.28 Aligned_cols=85 Identities=16% Similarity=0.156 Sum_probs=67.7
Q ss_pred HHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003924 37 AIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (786)
Q Consensus 37 ~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l 116 (786)
.+...|+..+..-|..|+..+|...-.+++||+|+|||.+..-.+++....+ +..+||++|+..-+.|+++.+.+.
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~----~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQH----AGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhc----CCceEEEcccchhHHHHHHHHHhc
Confidence 3344577889999999999999999999999999999987665555444443 556999999999999999988775
Q ss_pred ccCCCCeEEEEEc
Q 003924 117 GRYTDLRISLLVG 129 (786)
Q Consensus 117 ~~~~~l~v~~l~g 129 (786)
+ ++++-+..
T Consensus 478 g----LKVvRl~a 486 (935)
T KOG1802|consen 478 G----LKVVRLCA 486 (935)
T ss_pred C----ceEeeeeh
Confidence 4 77766543
No 182
>PRK10536 hypothetical protein; Provisional
Probab=97.90 E-value=0.00014 Score=76.17 Aligned_cols=142 Identities=17% Similarity=0.144 Sum_probs=84.4
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHH-----------HHH
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA-----------LQT 109 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa-----------~Q~ 109 (786)
.++...+..|...+..+..+.-+++.|++|+|||+..+...++.+... .-.+++|.-|+.+.. +-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~---~~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK---DVDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC---CeeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 456667899999999998888899999999999998887777666442 233455555654321 111
Q ss_pred HHHHHHHccCCCCeEEEEEcCCChhHHHHHH--cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHH
Q 003924 110 LKFTKELGRYTDLRISLLVGGDSMESQFEEL--AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAE 187 (786)
Q Consensus 110 ~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l--~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~ 187 (786)
.-++..+...... +.|.. ....+ .....|-|.....+ . ...+.+ ++||+|||+.+. ..
T Consensus 132 ~p~~~pi~D~L~~----~~~~~----~~~~~~~~~~~~Iei~~l~ym----R---Grtl~~-~~vIvDEaqn~~----~~ 191 (262)
T PRK10536 132 APYFRPVYDVLVR----RLGAS----FMQYCLRPEIGKVEIAPFAYM----R---GRTFEN-AVVILDEAQNVT----AA 191 (262)
T ss_pred HHHHHHHHHHHHH----HhChH----HHHHHHHhccCcEEEecHHHh----c---CCcccC-CEEEEechhcCC----HH
Confidence 1111111100000 01111 11211 12234555543322 2 333433 699999999865 37
Q ss_pred HHHHHHhhcccCCceEEE
Q 003924 188 QLHKILGQLSENRQTLLF 205 (786)
Q Consensus 188 ~l~~Il~~l~~~~q~ll~ 205 (786)
++..++.+++.+.++|+.
T Consensus 192 ~~k~~ltR~g~~sk~v~~ 209 (262)
T PRK10536 192 QMKMFLTRLGENVTVIVN 209 (262)
T ss_pred HHHHHHhhcCCCCEEEEe
Confidence 888999999988887764
No 183
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.82 E-value=4.5e-05 Score=75.55 Aligned_cols=106 Identities=20% Similarity=0.253 Sum_probs=71.7
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHcCC--CceeecCCCCHHHHHHHHHHHhcCCcEEEEEec--ccccccCCCC--ccee
Q 003924 265 SDQQTLIFVSTKHHVEFLNVLFREEGL--EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD--VAARGIDIPL--LDNV 338 (786)
Q Consensus 265 ~~~k~IVF~~t~~~ae~l~~~L~~~g~--~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTd--v~arGlDIp~--v~~V 338 (786)
.++.+|||+++....+.+...+..... ...++.- +...+...++.|+.+...||+++. .++.|||+|+ +..|
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~v 85 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAV 85 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhhee
Confidence 368999999999999999999876532 1122222 244667889999999999999998 8999999995 7789
Q ss_pred EecCCCC----CHh--------------------------HHHHHhhccccCCCccEEEEEEec
Q 003924 339 INWDFPP----KPK--------------------------IFVHRVGRAARAGRTGTAFSFVTS 372 (786)
Q Consensus 339 I~~d~P~----s~~--------------------------~~vQRvGR~gR~G~~G~ai~lv~~ 372 (786)
|...+|. ++. .+.|.+||+-|....--+++++++
T Consensus 86 ii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 86 IIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 9888873 111 137889999997665444555555
No 184
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.77 E-value=0.00024 Score=75.65 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=102.6
Q ss_pred CChHHHHHHHHHHHc----------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003924 45 VPTPIQRKTMPLILS----------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (786)
Q Consensus 45 ~ptpiQ~~aip~il~----------g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~ 114 (786)
.++..|-+++-.+.+ +..+++--.||.||.-...-.+++..... ..++|+++.+..|-....+.+.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G----r~r~vwvS~s~dL~~Da~RDl~ 112 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG----RKRAVWVSVSNDLKYDAERDLR 112 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC----CCceEEEECChhhhhHHHHHHH
Confidence 368889888866542 34588899999999876565667776653 4479999999999999888998
Q ss_pred HHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhcc----C-------CCCCceeeEEeCCccccccC
Q 003924 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE----D-------MSLKSVEYVVFDEADCLFGM 183 (786)
Q Consensus 115 ~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~----~-------l~l~~l~~vV~DEah~l~~~ 183 (786)
.++.. .+.+..+..-...+ ...-...||++|+..|........ . +.-..-.+|||||||..-..
T Consensus 113 DIG~~-~i~v~~l~~~~~~~----~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 113 DIGAD-NIPVHPLNKFKYGD----IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred HhCCC-cccceechhhccCc----CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCC
Confidence 88744 33333332211000 011245699999988766532100 0 11122358999999998765
Q ss_pred Ch--------HHHHHHHHhhcccCCceEEEeccCcHHH
Q 003924 184 GF--------AEQLHKILGQLSENRQTLLFSATLPSAL 213 (786)
Q Consensus 184 gf--------~~~l~~Il~~l~~~~q~ll~SATl~~~l 213 (786)
.- ......+-..+| +.+++.+|||-..+.
T Consensus 188 ~~~~~~~sk~g~avl~LQ~~LP-~ARvvY~SATgasep 224 (303)
T PF13872_consen 188 SSGSKKPSKTGIAVLELQNRLP-NARVVYASATGASEP 224 (303)
T ss_pred CccCccccHHHHHHHHHHHhCC-CCcEEEecccccCCC
Confidence 32 234455556676 555999999975443
No 185
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.76 E-value=7.4e-05 Score=83.03 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=68.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHc
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~ 141 (786)
-++|.|.+|||||+..+-.+ ..+. ....+..++++|+...|...+...+..-. . .
T Consensus 3 v~~I~G~aGTGKTvla~~l~-~~l~--~~~~~~~~~~l~~n~~l~~~l~~~l~~~~----------~------------~ 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLA-KELQ--NSEEGKKVLYLCGNHPLRNKLREQLAKKY----------N------------P 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHH-HHhh--ccccCCceEEEEecchHHHHHHHHHhhhc----------c------------c
Confidence 37899999999998755333 3331 12246779999999999998877765432 0 0
Q ss_pred CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccC-------ChHHHHHHHHhh
Q 003924 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-------GFAEQLHKILGQ 195 (786)
Q Consensus 142 ~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~-------gf~~~l~~Il~~ 195 (786)
......+..+..+...+.. .......+++|||||||++... ....++..++..
T Consensus 58 ~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 58 KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0111233444444333321 1344678899999999999873 234667777665
No 186
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.70 E-value=0.00043 Score=81.84 Aligned_cols=142 Identities=18% Similarity=0.167 Sum_probs=87.6
Q ss_pred ChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEE
Q 003924 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (786)
Q Consensus 46 ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~ 125 (786)
..+.|+.|+-..+.++-+++.|++|+|||.+.. -++..+.........++++++||..-|..+.+.+.......++.
T Consensus 153 ~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~-~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~-- 229 (615)
T PRK10875 153 EVDWQKVAAAVALTRRISVISGGPGTGKTTTVA-KLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLT-- 229 (615)
T ss_pred CCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH-HHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc--
Confidence 358999999999999999999999999997632 22333322111224578999999998888887665433222110
Q ss_pred EEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhcc-----CCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCC
Q 003924 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE-----DMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (786)
Q Consensus 126 ~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~-----~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~ 200 (786)
+.. ......-..|-.+|+....... ..+.-.+++||||||-.+. ...+..++..+++.+
T Consensus 230 --------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~~~ 293 (615)
T PRK10875 230 --------DEQ----KKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPPHA 293 (615)
T ss_pred --------hhh----hhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhcccCC
Confidence 000 0011112344444443221100 1122346899999998643 567778888899888
Q ss_pred ceEEEe
Q 003924 201 QTLLFS 206 (786)
Q Consensus 201 q~ll~S 206 (786)
++||+.
T Consensus 294 rlIlvG 299 (615)
T PRK10875 294 RVIFLG 299 (615)
T ss_pred EEEEec
Confidence 888754
No 187
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.66 E-value=0.00041 Score=83.93 Aligned_cols=130 Identities=17% Similarity=0.160 Sum_probs=81.9
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccC
Q 003924 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (786)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~ 119 (786)
..++ .+++-|+.|+..+..++-+++.|++|+|||.+. -.+++.+... .....+++++||-.-|..+.+..
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~--~~~~~v~l~ApTg~AA~~L~e~~------ 388 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEEL--GGLLPVGLAAPTGRAAKRLGEVT------ 388 (720)
T ss_pred hcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHc--CCCceEEEEeCchHHHHHHHHhc------
Confidence 3565 799999999999999899999999999999753 3344444332 01156888999988776544321
Q ss_pred CCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhc----cCCCCCceeeEEeCCccccccCChHHHHHHHHhh
Q 003924 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEV----EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ 195 (786)
Q Consensus 120 ~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~----~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~ 195 (786)
+... .|..+++...... ..-.....++||+|||+.+. ...+..++..
T Consensus 389 -g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd----~~~~~~Ll~~ 439 (720)
T TIGR01448 389 -GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMD----TWLALSLLAA 439 (720)
T ss_pred -CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCC----HHHHHHHHHh
Confidence 1111 1212222111000 00012356799999999864 3456777778
Q ss_pred cccCCceEEEecc
Q 003924 196 LSENRQTLLFSAT 208 (786)
Q Consensus 196 l~~~~q~ll~SAT 208 (786)
++.+.++|++.=+
T Consensus 440 ~~~~~rlilvGD~ 452 (720)
T TIGR01448 440 LPDHARLLLVGDT 452 (720)
T ss_pred CCCCCEEEEECcc
Confidence 8888888776533
No 188
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.62 E-value=0.00063 Score=69.99 Aligned_cols=153 Identities=22% Similarity=0.331 Sum_probs=97.8
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHc---CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEE
Q 003924 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILS---GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (786)
Q Consensus 23 ~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~---g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL 99 (786)
.+|+.+..+.+++=.+.. ++ .++|.|.+....+++ |.+.+.+.-+|.|||.+ ++|++..+... ...-+.++
T Consensus 3 ~~w~p~~~P~wLl~E~e~-~i-liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAd---g~~Lvrvi 76 (229)
T PF12340_consen 3 RNWDPMEYPDWLLFEIES-NI-LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALAD---GSRLVRVI 76 (229)
T ss_pred CCCCchhChHHHHHHHHc-Cc-eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcC---CCcEEEEE
Confidence 367788888888766653 33 799999999988886 57899999999999987 66887776653 23345566
Q ss_pred cCcHHHHHHHHHHHHH-HccCCCCeEEEE--EcCCChhH----HH----HHHcCCCCEEEECcHHHHHHHhhc------c
Q 003924 100 SPTRDLALQTLKFTKE-LGRYTDLRISLL--VGGDSMES----QF----EELAQNPDIIIATPGRLMHHLSEV------E 162 (786)
Q Consensus 100 ~PtreLa~Q~~~~l~~-l~~~~~l~v~~l--~gg~~~~~----~~----~~l~~~~dIiV~Tpgrll~~l~~~------~ 162 (786)
+| ..|..|++..+.. |+...+-.+..+ .-...... .+ +.....-.|+++||+.++.+.... .
T Consensus 77 Vp-k~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~ 155 (229)
T PF12340_consen 77 VP-KALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDG 155 (229)
T ss_pred cC-HHHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhc
Confidence 66 4699999988764 554444333332 22222211 11 222345679999999776543210 0
Q ss_pred CC-----------CCCceeeEEeCCcccccc
Q 003924 163 DM-----------SLKSVEYVVFDEADCLFG 182 (786)
Q Consensus 163 ~l-----------~l~~l~~vV~DEah~l~~ 182 (786)
.. -+....-=|+||+|.++.
T Consensus 156 ~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 156 KPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred CHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 00 023344568899988764
No 189
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.62 E-value=0.0006 Score=80.40 Aligned_cols=141 Identities=20% Similarity=0.235 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCC-CCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEE
Q 003924 47 TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQ-GGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (786)
Q Consensus 47 tpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~-~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~ 125 (786)
.+.|+.|+..++.++-+++.|++|+|||.+.. .++..+...... ...++++++||---|..+.+.+.......+..
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~-~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~-- 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVA-RLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA-- 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHH-HHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc--
Confidence 37999999999999999999999999997632 333333222111 13579999999988888777665432211110
Q ss_pred EEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhcc-----CCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCC
Q 003924 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE-----DMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (786)
Q Consensus 126 ~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~-----~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~ 200 (786)
... .....+-..|..+|+....... .-....+++||||||-.+. ...+..++..++...
T Consensus 224 --------~~~----~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~~~ 287 (586)
T TIGR01447 224 --------EAL----IAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPPNT 287 (586)
T ss_pred --------hhh----hhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCCCC
Confidence 000 0011122445555543321100 0112357899999997643 356777888888888
Q ss_pred ceEEEe
Q 003924 201 QTLLFS 206 (786)
Q Consensus 201 q~ll~S 206 (786)
++|++.
T Consensus 288 rlIlvG 293 (586)
T TIGR01447 288 KLILLG 293 (586)
T ss_pred EEEEEC
Confidence 777643
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=97.59 E-value=0.00027 Score=60.37 Aligned_cols=60 Identities=27% Similarity=0.350 Sum_probs=42.1
Q ss_pred HHHHHHcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003924 53 TMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (786)
Q Consensus 53 aip~il~g-~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l 113 (786)
+|...+.+ .-+++.|++|||||.+.+-.+.+.+...... +.++||++||+..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 34433444 4466699999999977665555554332223 778999999999999988776
No 191
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.53 E-value=0.00018 Score=81.84 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=51.3
Q ss_pred CChHHHHHHHHHHHcCCc-EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003924 45 VPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~d-vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l 113 (786)
.+.+-|..|+...+..++ .++.||+|+|||.+....+.+.+.. +.++||+.||.+-+..+.+.+
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~-----~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ-----KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc-----CCeEEEEcCchHHHHHHHHHh
Confidence 567889999998888865 7789999999998866555544443 678999999999888888743
No 192
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=97.53 E-value=0.00074 Score=80.21 Aligned_cols=100 Identities=17% Similarity=0.178 Sum_probs=86.5
Q ss_pred cEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC-cEE-EEEecccccccCCCCcceeEecCCCC
Q 003924 268 QTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK-TMF-LIVTDVAARGIDIPLLDNVINWDFPP 345 (786)
Q Consensus 268 k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~-~~I-LVaTdv~arGlDIp~v~~VI~~d~P~ 345 (786)
++|||+.-...+..+...|...++....+.|.|....|...+..|..+. ..| |++.-+...|+|+....+|+..|+-+
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~w 620 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWW 620 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhc
Confidence 8899988888888888888888888888999999999999999998543 334 55778899999999999999999999
Q ss_pred CHhHHHHHhhccccCCCccEEE
Q 003924 346 KPKIFVHRVGRAARAGRTGTAF 367 (786)
Q Consensus 346 s~~~~vQRvGR~gR~G~~G~ai 367 (786)
+|..--|.+-|+.|.|+.-.+.
T Consensus 621 np~~eeQaidR~hrigq~k~v~ 642 (674)
T KOG1001|consen 621 NPAVEEQAIDRAHRIGQTKPVK 642 (674)
T ss_pred ChHHHHHHHHHHHHhcccceee
Confidence 9999999999999999865553
No 193
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.42 E-value=0.00075 Score=79.68 Aligned_cols=134 Identities=25% Similarity=0.321 Sum_probs=87.4
Q ss_pred CChHHHHHHHHHHHc----CCcEEEEcCCCChHHHHHHHHHHH---HHhhc--------CC-------------------
Q 003924 45 VPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQ---RLNQH--------VP------------------- 90 (786)
Q Consensus 45 ~ptpiQ~~aip~il~----g~dvvl~a~TGSGKT~afllpile---~L~~~--------~~------------------- 90 (786)
+|+|.|...+..++. ..+.++.+|||+|||++.|...+. .+... ..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 799999988877764 578999999999999876655442 32200 00
Q ss_pred -C------CCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcC---------------------------------
Q 003924 91 -Q------GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG--------------------------------- 130 (786)
Q Consensus 91 -~------~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg--------------------------------- 130 (786)
. ..+++.|-+-|..-..|+.++++..+.. ++..++-.-
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~f 178 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCHF 178 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccccccc
Confidence 0 1357788888888888988888876644 222221100
Q ss_pred -----------------CChhHHH--------------HHHcCCCCEEEECcHHHHHHHhh-ccCCCCCceeeEEeCCcc
Q 003924 131 -----------------DSMESQF--------------EELAQNPDIIIATPGRLMHHLSE-VEDMSLKSVEYVVFDEAD 178 (786)
Q Consensus 131 -----------------~~~~~~~--------------~~l~~~~dIiV~Tpgrll~~l~~-~~~l~l~~l~~vV~DEah 178 (786)
.+.++.. +.+...+|||+|-+..|++-..+ ...++|.+ .+|||||||
T Consensus 179 ~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEAH 257 (945)
T KOG1132|consen 179 YKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEAH 257 (945)
T ss_pred cccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEeccc
Confidence 0001100 34556789999999998876544 22345544 489999999
Q ss_pred ccc
Q 003924 179 CLF 181 (786)
Q Consensus 179 ~l~ 181 (786)
.+-
T Consensus 258 NiE 260 (945)
T KOG1132|consen 258 NIE 260 (945)
T ss_pred cHH
Confidence 875
No 194
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.39 E-value=0.0017 Score=80.25 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=80.4
Q ss_pred HCCCCCChHHHHHHHHHHHcCCc-EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHcc
Q 003924 40 RKGYKVPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (786)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~g~d-vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~ 118 (786)
..|+ .+++-|+.++..++.+.+ +++.|..|+|||.+ +-.+.+.+.. .|.+++.++||---|..+.+
T Consensus 342 ~~g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~----~G~~V~~~ApTGkAA~~L~e------- 408 (988)
T PRK13889 342 ARGL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA----AGYEVRGAALSGIAAENLEG------- 408 (988)
T ss_pred hcCC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH----cCCeEEEecCcHHHHHHHhh-------
Confidence 3565 799999999999998765 78999999999986 4444444433 37789999999876654332
Q ss_pred CCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhc-c
Q 003924 119 YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-S 197 (786)
Q Consensus 119 ~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l-~ 197 (786)
.+++.. .|..+|++-... ....+...++||||||-.+.. .++..++... +
T Consensus 409 ~tGi~a------------------------~TI~sll~~~~~-~~~~l~~~~vlIVDEASMv~~----~~m~~LL~~a~~ 459 (988)
T PRK13889 409 GSGIAS------------------------RTIASLEHGWGQ-GRDLLTSRDVLVIDEAGMVGT----RQLERVLSHAAD 459 (988)
T ss_pred ccCcch------------------------hhHHHHHhhhcc-cccccccCcEEEEECcccCCH----HHHHHHHHhhhh
Confidence 122211 122222221111 122355678999999986543 3555666543 4
Q ss_pred cCCceEEEecc
Q 003924 198 ENRQTLLFSAT 208 (786)
Q Consensus 198 ~~~q~ll~SAT 208 (786)
.+.++||+.=+
T Consensus 460 ~garvVLVGD~ 470 (988)
T PRK13889 460 AGAKVVLVGDP 470 (988)
T ss_pred CCCEEEEECCH
Confidence 56777776544
No 195
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.32 E-value=0.0029 Score=77.02 Aligned_cols=135 Identities=18% Similarity=0.201 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHH
Q 003924 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (786)
Q Consensus 30 Ls~~ll~~l~~~g~~~ptpiQ~~aip~il~g-~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q 108 (786)
+++..+......++ .+++-|+.|+..++.+ +-+++.|++|+|||.+ +-.+.+.+.. .|.++++++||---|..
T Consensus 338 ~~~~~~~~~l~~~~-~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl-l~~i~~~~~~----~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 338 VSPPIVDAAIDQHY-RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM-LKAAREAWEA----AGYRVIGAALSGKAAEG 411 (744)
T ss_pred CCHHHHHHHHhccC-CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH-HHHHHHHHHh----CCCeEEEEeCcHHHHHH
Confidence 44544444444454 6899999999999875 5688999999999975 3344444433 36789999999876655
Q ss_pred HHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHH
Q 003924 109 TLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQ 188 (786)
Q Consensus 109 ~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~ 188 (786)
+.+. +++... |-.+++..... ....+...++||||||-.+.. ..
T Consensus 412 L~~~-------~g~~a~------------------------Ti~~~~~~~~~-~~~~~~~~~llIvDEasMv~~----~~ 455 (744)
T TIGR02768 412 LQAE-------SGIESR------------------------TLASLEYAWAN-GRDLLSDKDVLVIDEAGMVGS----RQ 455 (744)
T ss_pred HHhc-------cCCcee------------------------eHHHHHhhhcc-CcccCCCCcEEEEECcccCCH----HH
Confidence 4321 222211 22222111111 122356778999999987643 34
Q ss_pred HHHHHhhc-ccCCceEEEe
Q 003924 189 LHKILGQL-SENRQTLLFS 206 (786)
Q Consensus 189 l~~Il~~l-~~~~q~ll~S 206 (786)
+..++... ....++||+.
T Consensus 456 ~~~Ll~~~~~~~~kliLVG 474 (744)
T TIGR02768 456 MARVLKEAEEAGAKVVLVG 474 (744)
T ss_pred HHHHHHHHHhcCCEEEEEC
Confidence 44555533 3466666655
No 196
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=97.26 E-value=0.012 Score=78.21 Aligned_cols=210 Identities=13% Similarity=0.146 Sum_probs=121.2
Q ss_pred CChHHHHHHHHHHHcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCC
Q 003924 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g--~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l 122 (786)
.+++-|+.++..++.. +-+++.|+.|+|||.+ +-.+++.+.. .|.++++++||-.-+..+.+....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~----~G~~V~~lAPTgrAA~~L~e~~g~------- 496 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE----QGYEIQIITAGSLSAQELRQKIPR------- 496 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh----cCCeEEEEeCCHHHHHHHHHHhcc-------
Confidence 6899999999999876 4588999999999975 3344444333 478899999999877665543221
Q ss_pred eEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhc-ccCCc
Q 003924 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQ 201 (786)
Q Consensus 123 ~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l-~~~~q 201 (786)
.. .+...+...+.. + ....|...|+ . ....+..-++||||||-.+. ...+..++... +.+.+
T Consensus 497 ~A------~Ti~~~l~~l~~-~-~~~~tv~~fl---~--~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~gar 559 (1960)
T TIGR02760 497 LA------STFITWVKNLFN-D-DQDHTVQGLL---D--KSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHNSK 559 (1960)
T ss_pred hh------hhHHHHHHhhcc-c-ccchhHHHhh---c--ccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcCCE
Confidence 11 011111111111 1 1223333343 1 23445677899999998754 35666777655 46788
Q ss_pred eEEEecc--Cc-----HHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEc
Q 003924 202 TLLFSAT--LP-----SALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVS 274 (786)
Q Consensus 202 ~ll~SAT--l~-----~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~ 274 (786)
+||+.=+ +| ..+..+...++. .+++.........+ .+.......+...+.............++|+..
T Consensus 560 vVlvGD~~QL~sV~aG~~f~~L~~~gv~---t~~l~~i~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~~ 634 (1960)
T TIGR02760 560 LILLNDSAQRQGMSAGSAIDLLKEGGVT---TYAWVDTKQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVLAT 634 (1960)
T ss_pred EEEEcChhhcCccccchHHHHHHHCCCc---EEEeecccccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEEcC
Confidence 8877654 11 334434443322 22222211111111 222333444555565555554444556999999
Q ss_pred chhhHHHHHHHHHH
Q 003924 275 TKHHVEFLNVLFRE 288 (786)
Q Consensus 275 t~~~ae~l~~~L~~ 288 (786)
|......|....+.
T Consensus 635 t~~dr~~Ln~~iR~ 648 (1960)
T TIGR02760 635 THREQQDLTQIIRN 648 (1960)
T ss_pred CcHHHHHHHHHHHH
Confidence 98888877766654
No 197
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.0046 Score=68.75 Aligned_cols=131 Identities=21% Similarity=0.257 Sum_probs=64.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~ 139 (786)
|..++++||||+|||.+....+...+..+ ...++.+++ +...-.--.+.++.++...++.+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~---G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~-------------- 198 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF---GASKVALLT-TDSYRIGGHEQLRIFGKILGVPVH-------------- 198 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc---CCCeEEEEe-cccccccHHHHHHHHHHHcCCceE--------------
Confidence 45689999999999987654333322221 112343333 222211122344444444444333
Q ss_pred HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCC-hHHHHHHHHhhcccCCceEEEeccCcH-HHHHHH
Q 003924 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSENRQTLLFSATLPS-ALAEFA 217 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~g-f~~~l~~Il~~l~~~~q~ll~SATl~~-~l~~~~ 217 (786)
.+.+++.+...+.. +.+.++|+||.+-+..... ..+++..+.....+...++.+|||... .+.+.+
T Consensus 199 -------~~~~~~~l~~~l~~-----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi 266 (374)
T PRK14722 199 -------AVKDGGDLQLALAE-----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV 266 (374)
T ss_pred -------ecCCcccHHHHHHH-----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH
Confidence 23344444333332 3456789999997543211 223333332222233457888999743 334444
Q ss_pred Hhc
Q 003924 218 KAG 220 (786)
Q Consensus 218 ~~~ 220 (786)
+.|
T Consensus 267 ~~f 269 (374)
T PRK14722 267 QAY 269 (374)
T ss_pred HHH
Confidence 443
No 198
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.0071 Score=67.76 Aligned_cols=130 Identities=15% Similarity=0.110 Sum_probs=71.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~--PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~ 138 (786)
..+++.||||+|||.+..-.+. .+.......+.++.+++ +.|.-+.. .++.++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~-~~~~~~~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv~~------------ 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAA-IYGINSDDKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPVKA------------ 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHhhhccCCCeEEEEeccCccHHHHH---HHHHHhhcCCcceEe------------
Confidence 4588999999999987543332 22211111234444443 34444443 355555545554322
Q ss_pred HHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCC-hHHHHHHHHhhcccC-CceEEEeccCc-HHHHH
Q 003924 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSEN-RQTLLFSATLP-SALAE 215 (786)
Q Consensus 139 ~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~g-f~~~l~~Il~~l~~~-~q~ll~SATl~-~~l~~ 215 (786)
+.++..+...+.. +.++++||||++.++.... ....+..++...... ...+.+|||.. ..+.+
T Consensus 239 ---------~~~~~~l~~~L~~-----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~ 304 (388)
T PRK12723 239 ---------IESFKDLKEEITQ-----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKE 304 (388)
T ss_pred ---------eCcHHHHHHHHHH-----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHH
Confidence 2233444443332 3568899999999876321 234555566555433 45688999975 34444
Q ss_pred HHHhc
Q 003924 216 FAKAG 220 (786)
Q Consensus 216 ~~~~~ 220 (786)
.+..+
T Consensus 305 ~~~~~ 309 (388)
T PRK12723 305 IFHQF 309 (388)
T ss_pred HHHHh
Confidence 44444
No 199
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.19 E-value=0.0048 Score=76.89 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=88.7
Q ss_pred CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHc-CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHH
Q 003924 28 LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (786)
Q Consensus 28 lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~-g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa 106 (786)
.++++..+......++ .+++-|+.++..+.. ++-+++.|+.|+|||.+ +-++.+.+.. .|.+++.++||---|
T Consensus 365 ~~v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~----~G~~V~g~ApTgkAA 438 (1102)
T PRK13826 365 HGVREAVLAATFARHA-RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTM-MKAAREAWEA----AGYRVVGGALAGKAA 438 (1102)
T ss_pred CCCCHHHHHHHHhcCC-CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHH-HHHHHHHHHH----cCCeEEEEcCcHHHH
Confidence 3566777766666665 799999999998865 45588999999999976 3344444443 477899999997766
Q ss_pred HHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChH
Q 003924 107 LQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA 186 (786)
Q Consensus 107 ~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~ 186 (786)
..+.+ .+++... |..+|+..... ....+..-.+||||||-.+. .
T Consensus 439 ~~L~e-------~~Gi~a~------------------------TIas~ll~~~~-~~~~l~~~~vlVIDEAsMv~----~ 482 (1102)
T PRK13826 439 EGLEK-------EAGIQSR------------------------TLSSWELRWNQ-GRDQLDNKTVFVLDEAGMVA----S 482 (1102)
T ss_pred HHHHH-------hhCCCee------------------------eHHHHHhhhcc-CccCCCCCcEEEEECcccCC----H
Confidence 55432 1233222 21222111111 12335566799999998654 3
Q ss_pred HHHHHHHhhcc-cCCceEEEecc
Q 003924 187 EQLHKILGQLS-ENRQTLLFSAT 208 (786)
Q Consensus 187 ~~l~~Il~~l~-~~~q~ll~SAT 208 (786)
.++..++...+ .+.++||+.=+
T Consensus 483 ~~m~~Ll~~~~~~garvVLVGD~ 505 (1102)
T PRK13826 483 RQMALFVEAVTRAGAKLVLVGDP 505 (1102)
T ss_pred HHHHHHHHHHHhcCCEEEEECCH
Confidence 55666676664 46777776544
No 200
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.19 E-value=0.0013 Score=61.58 Aligned_cols=19 Identities=32% Similarity=0.295 Sum_probs=13.1
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afl 78 (786)
++-+++.|++|+|||.+.-
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4568999999999998644
No 201
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.93 E-value=0.0021 Score=69.46 Aligned_cols=124 Identities=21% Similarity=0.175 Sum_probs=75.5
Q ss_pred ChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEE
Q 003924 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (786)
Q Consensus 46 ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~ 125 (786)
+|+-|..+|.. ....++|.|..|||||.+.+.-++..|.... ....++|+|++|+..|..+.+.+..........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~-- 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLEEEQQE-- 75 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC--
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CChHHheecccCHHHHHHHHHHHHHhcCccccc--
Confidence 58899999987 6778999999999999987766665555432 335579999999999999988877753221100
Q ss_pred EEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCC-CceeeEEeCCcc
Q 003924 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSL-KSVEYVVFDEAD 178 (786)
Q Consensus 126 ~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l-~~l~~vV~DEah 178 (786)
................+.|+|...+...+........ -.-.+-|+|+..
T Consensus 76 ----~~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 76 ----SSDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp ----CTT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred ----ccccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0000111122223456888998877654433111111 123466777766
No 202
>PRK04296 thymidine kinase; Provisional
Probab=96.91 E-value=0.0019 Score=65.28 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=59.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc---HHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT---RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt---reLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~ 137 (786)
.-+++.|++|+|||...+-.+. ++.. .+.+++|+-|. +....+ +....++.+.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~-~~~~----~g~~v~i~k~~~d~~~~~~~-------i~~~lg~~~~------------ 58 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAY-NYEE----RGMKVLVFKPAIDDRYGEGK-------VVSRIGLSRE------------ 58 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHH-HHHH----cCCeEEEEeccccccccCCc-------EecCCCCccc------------
Confidence 3478899999999976554333 3333 26678888773 222111 1111121110
Q ss_pred HHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEecc
Q 003924 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (786)
Q Consensus 138 ~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SAT 208 (786)
.+.+..+..++..+.. .-..+++|||||+|.+. .+++.+++..+.+.-..+++++-
T Consensus 59 -------~~~~~~~~~~~~~~~~----~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 -------AIPVSSDTDIFELIEE----EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred -------ceEeCChHHHHHHHHh----hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 0123344445554433 23467899999998642 24466676665444445555544
No 203
>PRK14974 cell division protein FtsY; Provisional
Probab=96.81 E-value=0.013 Score=64.42 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=74.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc---HHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT---RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt---reLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~ 138 (786)
-+++.|++|+|||.+..-.+ ..+.. .+.+++++... ..-..|+......+ ++.+.....|......
T Consensus 142 vi~~~G~~GvGKTTtiakLA-~~l~~----~g~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~~~~g~dp~~v-- 210 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLA-YYLKK----NGFSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIKHKYGADPAAV-- 210 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHH-HHHHH----cCCeEEEecCCcCcHHHHHHHHHHHHHc----CCceecccCCCCHHHH--
Confidence 47889999999998644332 23333 25556655532 34445554444443 3444322222111110
Q ss_pred HHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc-cCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHH
Q 003924 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217 (786)
Q Consensus 139 ~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~-~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~ 217 (786)
+.+.+.. ......++||+|.+.++. +..+...|..+...+.+..-++.++||........+
T Consensus 211 ---------------~~~ai~~---~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a 272 (336)
T PRK14974 211 ---------------AYDAIEH---AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQA 272 (336)
T ss_pred ---------------HHHHHHH---HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHH
Confidence 1111111 112356799999999986 345667777777777777778889999876655555
Q ss_pred Hhc
Q 003924 218 KAG 220 (786)
Q Consensus 218 ~~~ 220 (786)
..+
T Consensus 273 ~~f 275 (336)
T PRK14974 273 REF 275 (336)
T ss_pred HHH
Confidence 544
No 204
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.79 E-value=0.011 Score=55.34 Aligned_cols=18 Identities=22% Similarity=0.364 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q 003924 60 GADVVAMARTGSGKTAAF 77 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~af 77 (786)
+..+++.|++|+|||...
T Consensus 19 ~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 577999999999999643
No 205
>PRK08181 transposase; Validated
Probab=96.78 E-value=0.021 Score=60.99 Aligned_cols=122 Identities=16% Similarity=0.187 Sum_probs=67.1
Q ss_pred ChHHHHHHHH----HHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCC
Q 003924 46 PTPIQRKTMP----LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (786)
Q Consensus 46 ptpiQ~~aip----~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~ 121 (786)
+.+.|..++. .+-.+.++++.||+|+|||-.......+. .. .|..++++ +..+|..++......
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a-~~----~g~~v~f~-~~~~L~~~l~~a~~~------ 155 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLAL-IE----NGWRVLFT-RTTDLVQKLQVARRE------ 155 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHH-HH----cCCceeee-eHHHHHHHHHHHHhC------
Confidence 3455555542 34467889999999999996544333222 22 24445444 455665554321100
Q ss_pred CeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCCh-HHHHHHHHhhcccCC
Q 003924 122 LRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF-AEQLHKILGQLSENR 200 (786)
Q Consensus 122 l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf-~~~l~~Il~~l~~~~ 200 (786)
.+...++.. +..+++|||||.+.+..... ...+..++.......
T Consensus 156 ---------------------------~~~~~~l~~--------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~ 200 (269)
T PRK08181 156 ---------------------------LQLESAIAK--------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERR 200 (269)
T ss_pred ---------------------------CcHHHHHHH--------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCC
Confidence 011112221 34567999999997654322 345666666554455
Q ss_pred ceEEEeccCcHHHH
Q 003924 201 QTLLFSATLPSALA 214 (786)
Q Consensus 201 q~ll~SATl~~~l~ 214 (786)
.+|+.|-..+....
T Consensus 201 s~IiTSN~~~~~w~ 214 (269)
T PRK08181 201 SILITANQPFGEWN 214 (269)
T ss_pred CEEEEcCCCHHHHH
Confidence 66666666655543
No 206
>PRK06526 transposase; Provisional
Probab=96.70 E-value=0.0083 Score=63.54 Aligned_cols=112 Identities=14% Similarity=0.113 Sum_probs=60.6
Q ss_pred HHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChh
Q 003924 55 PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134 (786)
Q Consensus 55 p~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~ 134 (786)
..+..+.++++.||+|+|||........+... .|.+++++.. .+|+.++.... .
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~-----~g~~v~f~t~-~~l~~~l~~~~--------------~------ 146 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQ-----AGHRVLFATA-AQWVARLAAAH--------------H------ 146 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHHHHHHH-----CCCchhhhhH-HHHHHHHHHHH--------------h------
Confidence 33446688999999999999765433333322 2555555433 23433322110 0
Q ss_pred HHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCC-hHHHHHHHHhhcccCCceEEEeccCcHHH
Q 003924 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSENRQTLLFSATLPSAL 213 (786)
Q Consensus 135 ~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~g-f~~~l~~Il~~l~~~~q~ll~SATl~~~l 213 (786)
..+.... +.. +..+++|||||+|.+.... -...+..++........+|+.|..++...
T Consensus 147 -------------~~~~~~~---l~~-----l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w 205 (254)
T PRK06526 147 -------------AGRLQAE---LVK-----LGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRW 205 (254)
T ss_pred -------------cCcHHHH---HHH-----hccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHH
Confidence 0111111 111 2356799999999764322 23345566554433456787777776553
No 207
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.65 E-value=0.062 Score=61.19 Aligned_cols=129 Identities=19% Similarity=0.215 Sum_probs=67.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~--PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~ 137 (786)
++.+++.||||+|||.+....+....... .+.++.+|. |.|.-+. +.+..++...++.+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~---~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~------------- 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY---GKKKVALITLDTYRIGAV---EQLKTYAKIMGIPV------------- 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc---CCCeEEEEECCccHHHHH---HHHHHHHHHhCCce-------------
Confidence 45688999999999976553333222011 244455444 3332222 23333333333332
Q ss_pred HHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc-CChHHHHHHHHhhc-ccCCceEEEeccCc-HHHH
Q 003924 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQL-SENRQTLLFSATLP-SALA 214 (786)
Q Consensus 138 ~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~-~gf~~~l~~Il~~l-~~~~q~ll~SATl~-~~l~ 214 (786)
.++.++..+...+.. +..+++||||.+-+... ......+..++... .+....+++|||.. ..+.
T Consensus 282 --------~~~~~~~~l~~~l~~-----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 282 --------EVVYDPKELAKALEQ-----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred --------EccCCHHhHHHHHHH-----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHH
Confidence 222344444444443 23578999999866432 22345566666522 22345788899875 3455
Q ss_pred HHHHhc
Q 003924 215 EFAKAG 220 (786)
Q Consensus 215 ~~~~~~ 220 (786)
.++..+
T Consensus 349 ~~~~~f 354 (424)
T PRK05703 349 DIYKHF 354 (424)
T ss_pred HHHHHh
Confidence 555443
No 208
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.58 E-value=0.0074 Score=55.88 Aligned_cols=42 Identities=21% Similarity=0.257 Sum_probs=25.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa 106 (786)
+..+++.||+|||||...... +..+.. .+..++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l-~~~~~~----~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARAL-ARELGP----PGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHH-HhccCC----CCCCEEEECCEEccc
Confidence 457899999999999864422 222221 223477777765443
No 209
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.48 E-value=0.083 Score=58.73 Aligned_cols=130 Identities=18% Similarity=0.194 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~ 139 (786)
++-++++||||.|||.+..-.+....... ....-+||-+.|-=. --.+.++.+++..++.+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~--~~~kVaiITtDtYRI--GA~EQLk~Ya~im~vp~~v------------- 265 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK--KKKKVAIITTDTYRI--GAVEQLKTYADIMGVPLEV------------- 265 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc--cCcceEEEEeccchh--hHHHHHHHHHHHhCCceEE-------------
Confidence 66789999999999976443222222111 122234555544321 2223466666555555443
Q ss_pred HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc-CChHHHHHHHHhhcccCCceEEEeccCcH-HHHHHH
Q 003924 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPS-ALAEFA 217 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl~~-~l~~~~ 217 (786)
|-+|.-|...+.. +.++++|.+|=+=+-.- .-...+|.+++....+---.|.+|||... .+.+..
T Consensus 266 --------v~~~~el~~ai~~-----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~ 332 (407)
T COG1419 266 --------VYSPKELAEAIEA-----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEII 332 (407)
T ss_pred --------ecCHHHHHHHHHH-----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHH
Confidence 4444444443332 44557788887765332 22455666666665444556788988643 344444
Q ss_pred Hh
Q 003924 218 KA 219 (786)
Q Consensus 218 ~~ 219 (786)
..
T Consensus 333 ~~ 334 (407)
T COG1419 333 KQ 334 (407)
T ss_pred HH
Confidence 33
No 210
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.40 E-value=0.007 Score=65.60 Aligned_cols=144 Identities=22% Similarity=0.319 Sum_probs=82.2
Q ss_pred CCCCCChHHHHHHHHHHHcCC--cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHcc
Q 003924 41 KGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~--dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~ 118 (786)
.|+......|+-|+.+++.-. -|.+.|+.|||||+.++...+++..... .-.++||-=|+..+... ++
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~--~y~KiiVtRp~vpvG~d-------IG- 293 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERK--RYRKIIVTRPTVPVGED-------IG- 293 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHh--hhceEEEecCCcCcccc-------cC-
Confidence 477667788999999888763 4889999999999988888887765431 23356666676544321 11
Q ss_pred CCCCeEEEEEcC--CChhHHHHHHcCCCCEE----EECcHHHHHHHhhccCCCCCc----------eeeEEeCCcccccc
Q 003924 119 YTDLRISLLVGG--DSMESQFEELAQNPDII----IATPGRLMHHLSEVEDMSLKS----------VEYVVFDEADCLFG 182 (786)
Q Consensus 119 ~~~l~v~~l~gg--~~~~~~~~~l~~~~dIi----V~Tpgrll~~l~~~~~l~l~~----------l~~vV~DEah~l~~ 182 (786)
.+-|. ..+..|...+..+-.++ =++.+.+-..+.. ..+.+.. -.+||+|||+.+-
T Consensus 294 -------fLPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~-~~iev~alt~IRGRSl~~~FiIIDEaQNLT- 364 (436)
T COG1875 294 -------FLPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSR-GRIEVEALTYIRGRSLPDSFIIIDEAQNLT- 364 (436)
T ss_pred -------cCCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhc-cceeeeeeeeecccccccceEEEehhhccC-
Confidence 11111 01111211111111111 1112222222221 2222111 1489999999865
Q ss_pred CChHHHHHHHHhhcccCCceEEEe
Q 003924 183 MGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 183 ~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
..++..|+.+..++.+++++.
T Consensus 365 ---pheikTiltR~G~GsKIVl~g 385 (436)
T COG1875 365 ---PHELKTILTRAGEGSKIVLTG 385 (436)
T ss_pred ---HHHHHHHHHhccCCCEEEEcC
Confidence 468999999999888888754
No 211
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.37 E-value=0.007 Score=61.56 Aligned_cols=124 Identities=23% Similarity=0.265 Sum_probs=65.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc-C-cHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH
Q 003924 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS-P-TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (786)
Q Consensus 63 vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~-P-treLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l 140 (786)
+++.||||+|||.+..-.+ .++... +.++.+++ - .|.=|. +.++.+++..++.+........
T Consensus 4 i~lvGptGvGKTTt~aKLA-a~~~~~----~~~v~lis~D~~R~ga~---eQL~~~a~~l~vp~~~~~~~~~-------- 67 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLA-ARLKLK----GKKVALISADTYRIGAV---EQLKTYAEILGVPFYVARTESD-------- 67 (196)
T ss_dssp EEEEESTTSSHHHHHHHHH-HHHHHT----T--EEEEEESTSSTHHH---HHHHHHHHHHTEEEEESSTTSC--------
T ss_pred EEEECCCCCchHhHHHHHH-HHHhhc----cccceeecCCCCCccHH---HHHHHHHHHhccccchhhcchh--------
Confidence 6789999999998754322 233322 33444444 3 332222 2344444444454433222211
Q ss_pred cCCCCEEEECcHHHH-HHHhhccCCCCCceeeEEeCCcccccc-CChHHHHHHHHhhcccCCceEEEeccCcHHHHH
Q 003924 141 AQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAE 215 (786)
Q Consensus 141 ~~~~dIiV~Tpgrll-~~l~~~~~l~l~~l~~vV~DEah~l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~ 215 (786)
|..++ ..+. .+..+++++|+||-+-+... ......+..++..+.+..-.+.+|||.......
T Consensus 68 ----------~~~~~~~~l~---~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 68 ----------PAEIAREALE---KFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp ----------HHHHHHHHHH---HHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred ----------hHHHHHHHHH---HHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 11111 1222 12234577899998876542 234567777777776666788899998655433
No 212
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.37 E-value=0.013 Score=65.61 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=43.5
Q ss_pred CChHHHHHHHHHH------HcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHH
Q 003924 45 VPTPIQRKTMPLI------LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (786)
Q Consensus 45 ~ptpiQ~~aip~i------l~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~ 109 (786)
.+++-|+.++..+ ..+..+++.|+-|+|||+.+- .+.+.+.. .+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~----~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS----RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc----ccceEEEecchHHHHHhc
Confidence 3678899998888 567789999999999998532 22222222 466799999998666554
No 213
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.36 E-value=0.0084 Score=62.94 Aligned_cols=87 Identities=23% Similarity=0.342 Sum_probs=66.9
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCC-ChhHHHHHHc-CCCCEEEECcHHHHHHHhhccCCCCCc
Q 003924 91 QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD-SMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKS 168 (786)
Q Consensus 91 ~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~-~~~~~~~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~ 168 (786)
...+.+||||.+-.-|..+.+.++.|. ..+..++-++.-. ..+++...+. ....|.||||+|+..++.. +.|.+++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~-~k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~-~~L~l~~ 201 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFK-GKDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLEN-GALSLSN 201 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhc-cCCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHc-CCCCccc
Confidence 446789999998777777777777763 1224444455543 6778888776 4788999999999999976 6899999
Q ss_pred eeeEEeCCccc
Q 003924 169 VEYVVFDEADC 179 (786)
Q Consensus 169 l~~vV~DEah~ 179 (786)
+.+||||--|+
T Consensus 202 l~~ivlD~s~~ 212 (252)
T PF14617_consen 202 LKRIVLDWSYL 212 (252)
T ss_pred CeEEEEcCCcc
Confidence 99999998763
No 214
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.041 Score=61.27 Aligned_cols=128 Identities=16% Similarity=0.230 Sum_probs=68.3
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc--CcH-HHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTR-DLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~--Ptr-eLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~ 137 (786)
+.+++.||||+|||......+. .+.. .+.++.++. |.| ..+.|+.. ++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~-~L~~----~GkkVglI~aDt~RiaAvEQLk~----yae~lgipv------------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW-QFHG----KKKTVGFITTDHSRIGTVQQLQD----YVKTIGFEV------------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH-HHHH----cCCcEEEEecCCcchHHHHHHHH----HhhhcCCcE-------------
Confidence 4578999999999986554433 2322 244454444 333 23344333 332222222
Q ss_pred HHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccC-ChHHHHHHHHhhcccCCceEEEeccCc-HHHHH
Q 003924 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLP-SALAE 215 (786)
Q Consensus 138 ~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~-gf~~~l~~Il~~l~~~~q~ll~SATl~-~~l~~ 215 (786)
+++.+|..+...+.... ...++++|+||-+=+.... .....+..++....+..-.+.+|||.. ..+..
T Consensus 300 --------~v~~d~~~L~~aL~~lk--~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~ 369 (436)
T PRK11889 300 --------IAVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 369 (436)
T ss_pred --------EecCCHHHHHHHHHHHH--hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHH
Confidence 22345666655554311 1125789999988775532 234445555554444444566898754 45566
Q ss_pred HHHhc
Q 003924 216 FAKAG 220 (786)
Q Consensus 216 ~~~~~ 220 (786)
.+..+
T Consensus 370 i~~~F 374 (436)
T PRK11889 370 IITNF 374 (436)
T ss_pred HHHHh
Confidence 66554
No 215
>PF13871 Helicase_C_4: Helicase_C-like
Probab=96.34 E-value=0.0087 Score=63.62 Aligned_cols=67 Identities=16% Similarity=0.344 Sum_probs=55.4
Q ss_pred HHHHHHhcCCcEEEEEecccccccCCCCc--------ceeEecCCCCCHhHHHHHhhccccCCC-ccEEEEEEecc
Q 003924 307 IHVSRFRARKTMFLIVTDVAARGIDIPLL--------DNVINWDFPPKPKIFVHRVGRAARAGR-TGTAFSFVTSE 373 (786)
Q Consensus 307 ~~l~~F~~g~~~ILVaTdv~arGlDIp~v--------~~VI~~d~P~s~~~~vQRvGR~gR~G~-~G~ai~lv~~~ 373 (786)
...+.|.+|+.+|+|.|++++.||.+..- .+-|.+.+||+++..+|.+||++|.|+ ....|.++..+
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~ 127 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTD 127 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecC
Confidence 45678999999999999999999998742 345678899999999999999999988 45556666543
No 216
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.26 E-value=0.027 Score=73.44 Aligned_cols=127 Identities=17% Similarity=0.176 Sum_probs=76.4
Q ss_pred CChHHHHHHHHHHHcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCC
Q 003924 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g--~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l 122 (786)
.+++.|+.|+..++.+ +-+++.|..|+|||.+. -.+++.+.......+..++.++||---|..+. + .++
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~----e----~Gi 1037 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEMR----S----AGV 1037 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHHH----h----cCc
Confidence 7899999999999986 45889999999999763 23333332111123567889999987665543 2 122
Q ss_pred eEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHh---hccCCCCCceeeEEeCCccccccCChHHHHHHHHhhccc-
Q 003924 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLS---EVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE- 198 (786)
Q Consensus 123 ~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~---~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~- 198 (786)
.. .|..+|+.... ...........+|||||+=.+. ...+..++..++.
T Consensus 1038 ~A------------------------~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~----~~~m~~Ll~~~~~~ 1089 (1747)
T PRK13709 1038 DA------------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVG----NTDMARAYALIAAG 1089 (1747)
T ss_pred ch------------------------hhHHHHhcccccccccccCCCCCCcEEEEEcccccc----HHHHHHHHHhhhcC
Confidence 21 12222221110 0011122344799999997654 3456666666664
Q ss_pred CCceEEEecc
Q 003924 199 NRQTLLFSAT 208 (786)
Q Consensus 199 ~~q~ll~SAT 208 (786)
++++||+.=+
T Consensus 1090 garvVLVGD~ 1099 (1747)
T PRK13709 1090 GGRAVSSGDT 1099 (1747)
T ss_pred CCEEEEecch
Confidence 5777776544
No 217
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.25 E-value=0.03 Score=53.79 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHhcCC-cEEEEEecccccccCCCC--cceeEecCCC
Q 003924 299 DMDQDARKIHVSRFRARK-TMFLIVTDVAARGIDIPL--LDNVINWDFP 344 (786)
Q Consensus 299 ~l~q~~R~~~l~~F~~g~-~~ILVaTdv~arGlDIp~--v~~VI~~d~P 344 (786)
..+..+...+++.|+... ..||++|.-.++|||+|+ +.+||...+|
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 344445677888998764 389999988999999996 5678877776
No 218
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.25 E-value=0.024 Score=63.64 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=48.5
Q ss_pred CCCCChHHHHHHHHHHH----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 003924 42 GYKVPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (786)
Q Consensus 42 g~~~ptpiQ~~aip~il----~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~ 115 (786)
.|...+|-|..-+..+- .+.++++..|+|+|||.+.+..++..-.. .+..-.+.++++-|..-++-...+++.
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~-~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLH-YPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHh-CCcccceEEEecCcchHHHHHHHHHHH
Confidence 56778899988776554 34679999999999998866655554333 333455678877665444444444443
No 219
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.25 E-value=0.014 Score=69.92 Aligned_cols=125 Identities=21% Similarity=0.244 Sum_probs=80.8
Q ss_pred CCChHHHHHHHHHHHcCCc-EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCC
Q 003924 44 KVPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (786)
Q Consensus 44 ~~ptpiQ~~aip~il~g~d-vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l 122 (786)
..+...|++|+-.++..+| .++.|-+|+|||.+.. .++..|.. .|.++|+.+=|..-+..+.-.++.++ +
T Consensus 668 ~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~-~LIkiL~~----~gkkVLLtsyThsAVDNILiKL~~~~----i 738 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAEDYALILGMPGTGKTTTIS-LLIKILVA----LGKKVLLTSYTHSAVDNILIKLKGFG----I 738 (1100)
T ss_pred hhcCHHHHHHHHHHHhccchheeecCCCCCchhhHH-HHHHHHHH----cCCeEEEEehhhHHHHHHHHHHhccC----c
Confidence 4678899999999998877 7789999999997643 33333333 37789999999887777766665543 2
Q ss_pred eEEEE---------------EcCCChh--HHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc
Q 003924 123 RISLL---------------VGGDSME--SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (786)
Q Consensus 123 ~v~~l---------------~gg~~~~--~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~ 182 (786)
.+.-+ +.+.+.. .......+.+.||.+|=--+.|. -+....++|+|+|||-.+..
T Consensus 739 ~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~p-----lf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 739 YILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHP-----LFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred ceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCch-----hhhccccCEEEEcccccccc
Confidence 22211 1111111 12223346788888884333222 23456689999999987653
No 220
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.15 E-value=0.097 Score=55.09 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=31.8
Q ss_pred CCceeeEEeCCccccccCChHH-HHHHHHhhc-ccCCceEEEeccCcHHHHH
Q 003924 166 LKSVEYVVFDEADCLFGMGFAE-QLHKILGQL-SENRQTLLFSATLPSALAE 215 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~-~l~~Il~~l-~~~~q~ll~SATl~~~l~~ 215 (786)
+..+++|||||++......+.. .+..|+..- .....+|+.|---+..+..
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~ 211 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTK 211 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHH
Confidence 3467899999999876544443 455566543 3356777777665555443
No 221
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.15 E-value=0.32 Score=56.32 Aligned_cols=128 Identities=20% Similarity=0.221 Sum_probs=63.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~--PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~ 136 (786)
.|..+++.|+||+|||......+......+ .+.++.++. +.|.-+. +.+..++...++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~---~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~---------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQH---APRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE---------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc---CCCceEEEecccccccHH---HHHHHhhcccCceeEe----------
Confidence 356688999999999986543333222221 123344443 2343332 2333444333332221
Q ss_pred HHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc-CChHHHHHHHHhhcccCCceEEEeccCc-HHHH
Q 003924 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLP-SALA 214 (786)
Q Consensus 137 ~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl~-~~l~ 214 (786)
+.+++.+...+.. +.+.++||||.+=+... .....++..+... .....+++++++.. ..+.
T Consensus 413 -----------a~d~~~L~~aL~~-----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~Dl~ 475 (559)
T PRK12727 413 -----------ADSAESLLDLLER-----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSDLD 475 (559)
T ss_pred -----------cCcHHHHHHHHHH-----hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhHHH
Confidence 1233344444443 24578999999976431 1122233333322 23456777888764 3444
Q ss_pred HHHHh
Q 003924 215 EFAKA 219 (786)
Q Consensus 215 ~~~~~ 219 (786)
++++.
T Consensus 476 eii~~ 480 (559)
T PRK12727 476 EVVRR 480 (559)
T ss_pred HHHHH
Confidence 44444
No 222
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.14 E-value=0.032 Score=71.91 Aligned_cols=63 Identities=25% Similarity=0.256 Sum_probs=46.8
Q ss_pred CChHHHHHHHHHHHcC--CcEEEEcCCCChHHHHH--HHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHH
Q 003924 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAF--LVPMLQRLNQHVPQGGVRALILSPTRDLALQTL 110 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g--~dvvl~a~TGSGKT~af--llpile~L~~~~~~~g~r~LIL~PtreLa~Q~~ 110 (786)
.+++-|+.|+..++.. +-+++.|..|+|||.+. ++-++..+.. ..+..++.++||---+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e---~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE---SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh---ccCceEEEEechHHHHHHHH
Confidence 7999999999999966 56999999999999863 2233333322 24667889999987766543
No 223
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.073 Score=64.14 Aligned_cols=129 Identities=19% Similarity=0.216 Sum_probs=67.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc-CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS-PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~-PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~ 139 (786)
+-+++.||||+|||.++...+......+ .+.++.++. .+--. -..+.++.++...++.+
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~~~~~---G~kkV~lit~Dt~Ri--gA~eQL~~~a~~~gvpv--------------- 245 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARCVARE---GADQLALLTTDSFRI--GALEQLRIYGRILGVPV--------------- 245 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhHHHHc---CCCeEEEecCcccch--HHHHHHHHHHHhCCCCc---------------
Confidence 3478999999999987654433221221 122444433 22111 11233444443333322
Q ss_pred HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc-CChHHHHHHHHhhcccCCceEEEeccCc-HHHHHHH
Q 003924 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLP-SALAEFA 217 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl~-~~l~~~~ 217 (786)
.++.+|..+...+.. +.+.++|+||=+=+... ......+..+.....+...++.+|||.- ..+.+++
T Consensus 246 ------~~~~~~~~l~~al~~-----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~ 314 (767)
T PRK14723 246 ------HAVKDAADLRFALAA-----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV 314 (767)
T ss_pred ------cccCCHHHHHHHHHH-----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH
Confidence 233456666555543 33557899998877542 2234445555444445566788889863 3344444
Q ss_pred Hhc
Q 003924 218 KAG 220 (786)
Q Consensus 218 ~~~ 220 (786)
..|
T Consensus 315 ~~f 317 (767)
T PRK14723 315 HAY 317 (767)
T ss_pred HHH
Confidence 443
No 224
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.97 E-value=0.037 Score=53.26 Aligned_cols=69 Identities=20% Similarity=0.309 Sum_probs=47.7
Q ss_pred HHHHHHHHHhcCCc---EEEEEecc--cccccCCCC--cceeEecCCCC----CH-------------------------
Q 003924 304 ARKIHVSRFRARKT---MFLIVTDV--AARGIDIPL--LDNVINWDFPP----KP------------------------- 347 (786)
Q Consensus 304 ~R~~~l~~F~~g~~---~ILVaTdv--~arGlDIp~--v~~VI~~d~P~----s~------------------------- 347 (786)
....+++.|+.... .||+++.- .++|||+|+ +.+||...+|. ++
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 33567888887543 69998876 899999996 67888878772 11
Q ss_pred --hHHHHHhhccccCCCccEEEEEEec
Q 003924 348 --KIFVHRVGRAARAGRTGTAFSFVTS 372 (786)
Q Consensus 348 --~~~vQRvGR~gR~G~~G~ai~lv~~ 372 (786)
..+.|.+||+-|....--++++++.
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~D~ 138 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLLDK 138 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEEec
Confidence 1247888999997654334445443
No 225
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.95 E-value=0.036 Score=55.26 Aligned_cols=49 Identities=20% Similarity=0.265 Sum_probs=33.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 63 vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
+++.|++|+|||...+-.+.+.+. .|.+++|++.. +-..++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-----~g~~v~~~s~e-~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-----RGEPGLYVTLE-ESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-----CCCcEEEEECC-CCHHHHHHHHHHcC
Confidence 689999999999876655554443 36668888653 44566666666553
No 226
>PRK06921 hypothetical protein; Provisional
Probab=95.71 E-value=0.19 Score=53.57 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q 108 (786)
+..+++.|++|+|||.... .+...+... .+..++++. ..+|..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~-aia~~l~~~---~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT-AAANELMRK---KGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHhhh---cCceEEEEE-HHHHHHH
Confidence 5679999999999996543 333333321 155565554 4445444
No 227
>PRK05642 DNA replication initiation factor; Validated
Probab=95.70 E-value=0.062 Score=56.21 Aligned_cols=44 Identities=25% Similarity=0.489 Sum_probs=29.7
Q ss_pred ceeeEEeCCccccccC-ChHHHHHHHHhhcccCCceEEEeccCcH
Q 003924 168 SVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLPS 211 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~-gf~~~l~~Il~~l~~~~q~ll~SATl~~ 211 (786)
++++||+|++|.+... .+...+..++..+......+++++|.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 4568999999977543 3456677788777654455666666544
No 228
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.68 E-value=0.055 Score=57.56 Aligned_cols=120 Identities=19% Similarity=0.318 Sum_probs=60.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHH---HHHccCCCCeEEEEEcCCChhHHHHH
Q 003924 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT---KELGRYTDLRISLLVGGDSMESQFEE 139 (786)
Q Consensus 63 vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l---~~l~~~~~l~v~~l~gg~~~~~~~~~ 139 (786)
|++.||||||||.+ +..|+..+..+. ...+|-|-.-.|-+.+-.+-+ ++++.. +. .-......+
T Consensus 128 ILVTGpTGSGKSTT-lAamId~iN~~~---~~HIlTIEDPIE~vh~skkslI~QREvG~d----T~-----sF~~aLraA 194 (353)
T COG2805 128 ILVTGPTGSGKSTT-LAAMIDYINKHK---AKHILTIEDPIEYVHESKKSLINQREVGRD----TL-----SFANALRAA 194 (353)
T ss_pred EEEeCCCCCcHHHH-HHHHHHHHhccC---CcceEEecCchHhhhcchHhhhhHHHhccc----HH-----HHHHHHHHH
Confidence 89999999999976 667888887653 223443333333332221111 122211 00 111223456
Q ss_pred HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCC
Q 003924 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~ 200 (786)
+...||||+.--=|=+.-+.- .+..-.-+.+||==.|.. +-...+..|+..+|..-
T Consensus 195 LReDPDVIlvGEmRD~ETi~~--ALtAAETGHLV~~TLHT~---sA~~ti~RiidvFp~~e 250 (353)
T COG2805 195 LREDPDVILVGEMRDLETIRL--ALTAAETGHLVFGTLHTN---SAAKTIDRIIDVFPAEE 250 (353)
T ss_pred hhcCCCEEEEeccccHHHHHH--HHHHHhcCCEEEEecccc---cHHHHHHHHHHhCChhh
Confidence 677888776532110000000 111223346777777763 35567777777777543
No 229
>PRK08727 hypothetical protein; Validated
Probab=95.67 E-value=0.07 Score=55.77 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=26.0
Q ss_pred CceeeEEeCCccccccCC-hHHHHHHHHhhccc-CCceEEEeccCcHHH
Q 003924 167 KSVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSATLPSAL 213 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~g-f~~~l~~Il~~l~~-~~q~ll~SATl~~~l 213 (786)
.++++|||||+|.+.... ....+..++..... ..++|+.|-..|..+
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 345689999999886432 23344445544433 334454444445443
No 230
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.67 E-value=0.086 Score=50.59 Aligned_cols=38 Identities=24% Similarity=0.352 Sum_probs=24.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHH
Q 003924 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (786)
Q Consensus 63 vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreL 105 (786)
+++.|++|+|||......+... .. .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~-~~----~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI-AT----KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH-Hh----cCCEEEEEECCcch
Confidence 6889999999998654333322 22 35567777765443
No 231
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.64 E-value=0.058 Score=62.04 Aligned_cols=91 Identities=19% Similarity=0.145 Sum_probs=60.1
Q ss_pred cCCCCCHHHHHHHH-HCCCCCC-------hHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC-CCCeEE
Q 003924 26 ESLNLSPNVFRAIK-RKGYKVP-------TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP-QGGVRA 96 (786)
Q Consensus 26 ~~lgLs~~ll~~l~-~~g~~~p-------tpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~-~~g~r~ 96 (786)
+++++..+++.... +.-=..+ -+-|-++|. --.++-+|++|..|||||.+++--+...|..+.. ..+..+
T Consensus 185 sd~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR-~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~v 263 (747)
T COG3973 185 SDTGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIR-FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPV 263 (747)
T ss_pred cCCchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHh-ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCce
Confidence 45677777655444 3322222 233444442 1234569999999999999888666666654432 233449
Q ss_pred EEEcCcHHHHHHHHHHHHHHc
Q 003924 97 LILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 97 LIL~PtreLa~Q~~~~l~~l~ 117 (786)
|||.|.+.+..-+..++=++|
T Consensus 264 lvl~PN~vFleYis~VLPeLG 284 (747)
T COG3973 264 LVLGPNRVFLEYISRVLPELG 284 (747)
T ss_pred EEEcCcHHHHHHHHHhchhhc
Confidence 999999999999888888876
No 232
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.63 E-value=0.039 Score=58.79 Aligned_cols=64 Identities=27% Similarity=0.272 Sum_probs=37.1
Q ss_pred HHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC
Q 003924 34 VFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (786)
Q Consensus 34 ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P 101 (786)
+.++|...|.....|--...+--+..|.-+++.|++|+|||...+..+.+.+.. .+..++|++-
T Consensus 4 ~~~~~~~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~----~g~~vl~iS~ 67 (271)
T cd01122 4 IREALSNEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQ----HGVRVGTISL 67 (271)
T ss_pred hhccccccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh----cCceEEEEEc
Confidence 444555444333333333333334456779999999999997655444443332 2667888874
No 233
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=95.61 E-value=0.03 Score=68.87 Aligned_cols=151 Identities=19% Similarity=0.145 Sum_probs=90.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhc-------------CCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEE
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQH-------------VPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISL 126 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~-------------~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~ 126 (786)
|+++++.-..|+|||.+-+...+..+-.. ....-.-+|||||.- +..||.+++....... +++..
T Consensus 374 g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~a-Il~QW~~EI~kH~~~~-lKv~~ 451 (1394)
T KOG0298|consen 374 GKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNA-ILMQWFEEIHKHISSL-LKVLL 451 (1394)
T ss_pred CcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHH-HHHHHHHHHHHhcccc-ceEEE
Confidence 46789999999999987665544332110 011123489999975 5688888777655333 67776
Q ss_pred EEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCC-------------C----CCcee--eEEeCCccccccCChHH
Q 003924 127 LVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-------------S----LKSVE--YVVFDEADCLFGMGFAE 187 (786)
Q Consensus 127 l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l-------------~----l~~l~--~vV~DEah~l~~~gf~~ 187 (786)
+.|=....-....-.-.+|||+||+..|..-+...... . |-.+. =|++|||+.+-. -..
T Consensus 452 Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves--ssS 529 (1394)
T KOG0298|consen 452 YFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES--SSS 529 (1394)
T ss_pred EechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc--hHH
Confidence 66521110000011236999999999886655432111 0 11111 289999997654 456
Q ss_pred HHHHHHhhcccCCceEEEeccCcHHHHH
Q 003924 188 QLHKILGQLSENRQTLLFSATLPSALAE 215 (786)
Q Consensus 188 ~l~~Il~~l~~~~q~ll~SATl~~~l~~ 215 (786)
...+++..++ ...+-..|+||-..+.+
T Consensus 530 ~~a~M~~rL~-~in~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 530 AAAEMVRRLH-AINRWCVTGTPIQKIDD 556 (1394)
T ss_pred HHHHHHHHhh-hhceeeecCCchhhhhh
Confidence 6666666776 44567889997554444
No 234
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.55 E-value=0.37 Score=51.45 Aligned_cols=157 Identities=15% Similarity=0.213 Sum_probs=82.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEE-cCc-H-HHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL-SPT-R-DLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL-~Pt-r-eLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~ 137 (786)
..+++.|++|+|||..+.+.+.. +.. .+.++.++ +.+ | ..+.|+...... .++.+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~-l~~----~~~~v~~i~~D~~ri~~~~ql~~~~~~----~~~~~~------------ 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQ-FHG----KKKTVGFITTDHSRIGTVQQLQDYVKT----IGFEVI------------ 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHH-HHH----cCCeEEEEecCCCCHHHHHHHHHHhhh----cCceEE------------
Confidence 56889999999999876644433 222 13334433 322 2 455555443332 223221
Q ss_pred HHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc-CChHHHHHHHHhhcccCCceEEEeccC-cHHHHH
Q 003924 138 EELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATL-PSALAE 215 (786)
Q Consensus 138 ~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl-~~~l~~ 215 (786)
...+|..+...+.... ....+++||||-+=+... ......+..++....+..-.+.+|||. +..+..
T Consensus 135 ---------~~~~~~~l~~~l~~l~--~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~ 203 (270)
T PRK06731 135 ---------AVRDEAAMTRALTYFK--EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 203 (270)
T ss_pred ---------ecCCHHHHHHHHHHHH--hcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH
Confidence 1124444544443211 123578999999877542 223444555555544444466799986 456667
Q ss_pred HHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHh
Q 003924 216 FAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262 (786)
Q Consensus 216 ~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~ 262 (786)
.++.+-. +. .-...+--++...+...++.++...
T Consensus 204 ~~~~f~~----~~---------~~~~I~TKlDet~~~G~~l~~~~~~ 237 (270)
T PRK06731 204 IITNFKD----IH---------IDGIVFTKFDETASSGELLKIPAVS 237 (270)
T ss_pred HHHHhCC----CC---------CCEEEEEeecCCCCccHHHHHHHHH
Confidence 7666521 10 1112233344445666677777654
No 235
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.53 E-value=0.063 Score=60.88 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=26.9
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHH
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afl 78 (786)
-|-......+..+..++++++.|++|+|||..+.
T Consensus 179 i~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 179 IPETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CCHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 3445556667777789999999999999997654
No 236
>PRK08116 hypothetical protein; Validated
Probab=95.49 E-value=0.19 Score=53.78 Aligned_cols=111 Identities=14% Similarity=0.191 Sum_probs=59.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l 140 (786)
..+++.|++|+|||..+. .+...+... +..++++ +..+|...+...+..- +..
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~----~~~v~~~-~~~~ll~~i~~~~~~~-------------~~~-------- 167 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEK----GVPVIFV-NFPQLLNRIKSTYKSS-------------GKE-------- 167 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHc----CCeEEEE-EHHHHHHHHHHHHhcc-------------ccc--------
Confidence 349999999999997544 344454432 4445444 4555555433322110 000
Q ss_pred cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCC-hHHHHHHHHhhc-ccCCceEEEeccCcHHHHH
Q 003924 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQL-SENRQTLLFSATLPSALAE 215 (786)
Q Consensus 141 ~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~g-f~~~l~~Il~~l-~~~~q~ll~SATl~~~l~~ 215 (786)
+...+++. +.++++|||||.+...... ....+..|+... ....++|+.|-..|..+..
T Consensus 168 ---------~~~~~~~~--------l~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~~ 227 (268)
T PRK08116 168 ---------DENEIIRS--------LVNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLEELKN 227 (268)
T ss_pred ---------cHHHHHHH--------hcCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 01112211 3456799999996432211 345566666654 3456777777766666543
No 237
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.47 E-value=0.081 Score=60.89 Aligned_cols=109 Identities=17% Similarity=0.270 Sum_probs=58.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l 140 (786)
..+++.|++|+|||.... .+...+... ..+.+++++ +..++...+...+.. .
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~--~~~~~v~yi-~~~~~~~~~~~~~~~---------------~--------- 200 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEK--NPNAKVVYV-TSEKFTNDFVNALRN---------------N--------- 200 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHh--CCCCeEEEE-EHHHHHHHHHHHHHc---------------C---------
Confidence 458999999999997533 333333332 124556666 444554443332211 0
Q ss_pred cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCC-hHHHHHHHHhhccc-CCceEEEeccCcHHHH
Q 003924 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSATLPSALA 214 (786)
Q Consensus 141 ~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~g-f~~~l~~Il~~l~~-~~q~ll~SATl~~~l~ 214 (786)
+...+... +.++++|||||+|.+.... ....+..++..+.. ..++++.|.++|..+.
T Consensus 201 ---------~~~~~~~~--------~~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 201 ---------TMEEFKEK--------YRSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred ---------cHHHHHHH--------HhcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 01112211 2256799999999876432 23445555555433 4566555555555543
No 238
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=95.44 E-value=0.0019 Score=76.07 Aligned_cols=79 Identities=28% Similarity=0.402 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhc---CCcEEEEEeccc
Q 003924 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA---RKTMFLIVTDVA 326 (786)
Q Consensus 250 ~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~---g~~~ILVaTdv~ 326 (786)
.|...|...++.....+++|+||..-.+..+.+..++...+ ....+.|......|...+++|.. .+...|++|.+.
T Consensus 615 ~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 615 GKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 35666677777777889999999999999999999999888 88889999999999999999984 357789999887
Q ss_pred ccc
Q 003924 327 ARG 329 (786)
Q Consensus 327 arG 329 (786)
+.|
T Consensus 694 g~g 696 (696)
T KOG0383|consen 694 GLG 696 (696)
T ss_pred cCC
Confidence 654
No 239
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.40 E-value=0.13 Score=58.69 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=33.6
Q ss_pred eeeEEeCCccccc-cCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHh
Q 003924 169 VEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (786)
Q Consensus 169 l~~vV~DEah~l~-~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (786)
.++||||.+-++. +......+..+.....+..-++.++||........+..
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~ 227 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKA 227 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHH
Confidence 3789999996543 22244555666666666667788888887665555554
No 240
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.39 E-value=0.083 Score=54.45 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=25.5
Q ss_pred eeeEEeCCccccccC-ChHHHHHHHHhhcccCCceEEEeccCc
Q 003924 169 VEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLP 210 (786)
Q Consensus 169 l~~vV~DEah~l~~~-gf~~~l~~Il~~l~~~~q~ll~SATl~ 210 (786)
.++|||||+|.+... .....+..++..+......+++|++.+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 358999999997653 235566666655433323455565543
No 241
>PRK06893 DNA replication initiation factor; Validated
Probab=95.26 E-value=0.075 Score=55.38 Aligned_cols=46 Identities=17% Similarity=0.385 Sum_probs=29.8
Q ss_pred CceeeEEeCCccccccC-ChHHHHHHHHhhccc-CCceEEEeccCcHH
Q 003924 167 KSVEYVVFDEADCLFGM-GFAEQLHKILGQLSE-NRQTLLFSATLPSA 212 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~-gf~~~l~~Il~~l~~-~~q~ll~SATl~~~ 212 (786)
.+.++|||||+|.+... .+...+..++..+.. +.+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 45679999999987632 234456666665544 34566777776443
No 242
>PHA02533 17 large terminase protein; Provisional
Probab=95.20 E-value=0.14 Score=59.85 Aligned_cols=147 Identities=14% Similarity=0.105 Sum_probs=83.8
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCC-C-
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-L- 122 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~-l- 122 (786)
.|.|+|...+..+..++-.++..+-..|||.+....++...... .+..+++++|+..-|..+++.++.+..... +
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~---~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~ 135 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN---KDKNVGILAHKASMAAEVLDRTKQAIELLPDFL 135 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHh
Confidence 58999999998876677777888888899987665444333322 356899999999999998887765433211 1
Q ss_pred eEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhccc--CC
Q 003924 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSE--NR 200 (786)
Q Consensus 123 ~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~--~~ 200 (786)
........ . ..-.+.++..|.+.|-+. ....=.++.++||||+|.+.+ +.+.+..+...+.. ..
T Consensus 136 ~~~i~~~~-~---~~I~l~NGS~I~~lss~~--------~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~~~ 201 (534)
T PHA02533 136 QPGIVEWN-K---GSIELENGSKIGAYASSP--------DAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGRSS 201 (534)
T ss_pred hcceeecC-c---cEEEeCCCCEEEEEeCCC--------CccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCCCc
Confidence 11000000 0 001123455554444221 011112456899999997654 33444444433332 23
Q ss_pred ceEEEecc
Q 003924 201 QTLLFSAT 208 (786)
Q Consensus 201 q~ll~SAT 208 (786)
+++++|.+
T Consensus 202 r~iiiSTp 209 (534)
T PHA02533 202 KIIITSTP 209 (534)
T ss_pred eEEEEECC
Confidence 45555544
No 243
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.11 E-value=0.024 Score=64.71 Aligned_cols=143 Identities=20% Similarity=0.217 Sum_probs=71.3
Q ss_pred EEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHH-HHHccCCCCeEEEEEcCCChh----HHHHH
Q 003924 65 AMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLRISLLVGGDSME----SQFEE 139 (786)
Q Consensus 65 l~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l-~~l~~~~~l~v~~l~gg~~~~----~~~~~ 139 (786)
..+.||||||++....+++..... -...|+.|..-....-+..-+ ..+....=+.-...+++...+ ..+..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg----yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fse 77 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG----YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSE 77 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc----hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCc
Confidence 356799999998766666655442 223667776555555443311 111000000001111111111 01111
Q ss_pred HcCCCCEEEECcHHHHHHHhhccC--C---CCCcee-eEEeCCccccccCC-------------hHHHHHHHHhhcccCC
Q 003924 140 LAQNPDIIIATPGRLMHHLSEVED--M---SLKSVE-YVVFDEADCLFGMG-------------FAEQLHKILGQLSENR 200 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll~~l~~~~~--l---~l~~l~-~vV~DEah~l~~~g-------------f~~~l~~Il~~l~~~~ 200 (786)
......|+++|.+.|...+.+... . ++.+.. +++-||||++-... +...+...+. -.++-
T Consensus 78 hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~-~nkd~ 156 (812)
T COG3421 78 HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE-QNKDN 156 (812)
T ss_pred cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh-cCCCc
Confidence 234567999999988776654211 1 234444 45679999986321 1111111111 12345
Q ss_pred ceEEEeccCcHH
Q 003924 201 QTLLFSATLPSA 212 (786)
Q Consensus 201 q~ll~SATl~~~ 212 (786)
-++.||||.|..
T Consensus 157 ~~lef~at~~k~ 168 (812)
T COG3421 157 LLLEFSATIPKE 168 (812)
T ss_pred eeehhhhcCCcc
Confidence 578899999843
No 244
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=95.10 E-value=0.044 Score=58.33 Aligned_cols=45 Identities=16% Similarity=0.296 Sum_probs=30.6
Q ss_pred CCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccC
Q 003924 164 MSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (786)
Q Consensus 164 l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl 209 (786)
.....+.+|||||||.|... -...+...+...+.....+|.+.-+
T Consensus 125 ~~~~~fKiiIlDEcdsmtsd-aq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSD-AQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCCcceEEEEechhhhhHH-HHHHHHHHHhccccceEEEEEcCCh
Confidence 44566789999999997643 3455666666666666666666554
No 245
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.08 E-value=0.39 Score=52.87 Aligned_cols=111 Identities=14% Similarity=0.188 Sum_probs=60.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~ 139 (786)
+..+++.|+||+|||.... .+...+.. .|..+++ ++..+|..++... .+. ... +
T Consensus 183 ~~~Lll~G~~GtGKThLa~-aIa~~l~~----~g~~V~y-~t~~~l~~~l~~~--~~~------------~~~-~----- 236 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSN-CIAKELLD----RGKSVIY-RTADELIEILREI--RFN------------NDK-E----- 236 (329)
T ss_pred CCcEEEECCCCCcHHHHHH-HHHHHHHH----CCCeEEE-EEHHHHHHHHHHH--Hhc------------cch-h-----
Confidence 5789999999999997543 23333333 2555554 4555665554331 010 000 0
Q ss_pred HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCCh-HHHHHHHHhhccc-CCceEEEeccCcHHHHH
Q 003924 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF-AEQLHKILGQLSE-NRQTLLFSATLPSALAE 215 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf-~~~l~~Il~~l~~-~~q~ll~SATl~~~l~~ 215 (786)
....+. .+.++++||||+.+......| ...+..|+...-. ...+|+.|--.|..+..
T Consensus 237 --------------~~~~~~-----~l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~ 295 (329)
T PRK06835 237 --------------LEEVYD-----LLINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLK 295 (329)
T ss_pred --------------HHHHHH-----HhccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHH
Confidence 000011 134678999999987654333 3456666665433 45666666655555543
No 246
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.34 Score=54.93 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=76.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~ 139 (786)
|.-+.+.||||+|||......+...+..+. ...-++|.+.+.-. -..+.+..++...++.+..+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~--~~~v~~i~~d~~ri--galEQL~~~a~ilGvp~~~v------------ 254 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHG--ADKVALLTTDSYRI--GGHEQLRIYGKLLGVSVRSI------------ 254 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcC--CCeEEEEecCCcch--hHHHHHHHHHHHcCCceecC------------
Confidence 445889999999999865533332222211 12235566665322 22233444554444444322
Q ss_pred HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc-CChHHHHHHHHhhcccCCceEEEeccC-cHHHHHHH
Q 003924 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATL-PSALAEFA 217 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl-~~~l~~~~ 217 (786)
.++..+...+. .+.+.+++++|.+=+.-. .....++..+.....+...+|.+|||. ...+.+.+
T Consensus 255 ---------~~~~dl~~al~-----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~ 320 (420)
T PRK14721 255 ---------KDIADLQLMLH-----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI 320 (420)
T ss_pred ---------CCHHHHHHHHH-----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH
Confidence 22222222222 144567888887633211 112233333322222344568899996 44455555
Q ss_pred HhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHh
Q 003924 218 KAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262 (786)
Q Consensus 218 ~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~ 262 (786)
..+-.-+ .-...+--++...+...++.++...
T Consensus 321 ~~f~~~~-------------~~~~I~TKlDEt~~~G~~l~~~~~~ 352 (420)
T PRK14721 321 SAYQGHG-------------IHGCIITKVDEAASLGIALDAVIRR 352 (420)
T ss_pred HHhcCCC-------------CCEEEEEeeeCCCCccHHHHHHHHh
Confidence 5442111 1112233344445566677776654
No 247
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.97 E-value=0.098 Score=70.00 Aligned_cols=61 Identities=26% Similarity=0.313 Sum_probs=45.5
Q ss_pred CChHHHHHHHHHHHcCC--cEEEEcCCCChHHHHHH---HHHHHHHhhcCCCCCeEEEEEcCcHHHHHHH
Q 003924 45 VPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFL---VPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~--dvvl~a~TGSGKT~afl---lpile~L~~~~~~~g~r~LIL~PtreLa~Q~ 109 (786)
.+++.|+.|+..++.+. -+++.|..|+|||.+.. -++.+.+.. .+..++.++||-.-+..+
T Consensus 1019 ~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~----~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES----EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh----cCCeEEEEeChHHHHHHH
Confidence 79999999999999764 47889999999997641 233333322 467899999998766554
No 248
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.95 E-value=0.13 Score=58.23 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=57.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l 140 (786)
..+++.|++|+|||... ..+...+... ..+..++++.. .++..++...+..
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~--~~~~~v~yi~~-~~~~~~~~~~~~~------------------------- 187 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILEN--NPNAKVVYVSS-EKFTNDFVNALRN------------------------- 187 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHh--CCCCcEEEEEH-HHHHHHHHHHHHc-------------------------
Confidence 35899999999999754 3344444432 12556777643 3343332222110
Q ss_pred cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCC-hHHHHHHHHhhcc-cCCceEEEeccCcHHHH
Q 003924 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLS-ENRQTLLFSATLPSALA 214 (786)
Q Consensus 141 ~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~g-f~~~l~~Il~~l~-~~~q~ll~SATl~~~l~ 214 (786)
+ +...+...+ ..+++|||||+|.+.... ....+..++..+. .+.++|+.|...|..+.
T Consensus 188 --~------~~~~~~~~~--------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 188 --N------KMEEFKEKY--------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred --C------CHHHHHHHH--------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 0 112222222 235699999999876532 2344555555443 34565554444455443
No 249
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.92 E-value=0.037 Score=65.23 Aligned_cols=126 Identities=19% Similarity=0.184 Sum_probs=75.9
Q ss_pred CCChHHHHHHHHHHHcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHH-HHHHHccCC
Q 003924 44 KVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLK-FTKELGRYT 120 (786)
Q Consensus 44 ~~ptpiQ~~aip~il~g--~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~-~l~~l~~~~ 120 (786)
...+|+|++.+..+-.. +.|+++.++-+|||.+.+..+...+.. ....+|++.||.++|....+ .+..+.+.+
T Consensus 15 ~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~----~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~s 90 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ----DPGPMLYVQPTDDAAKDFSKERLDPMIRAS 90 (557)
T ss_pred CCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe----CCCCEEEEEEcHHHHHHHHHHHHHHHHHhC
Confidence 36789999999877654 579999999999999666544433333 24459999999999999874 455543332
Q ss_pred CCeEEEEEc---C-CChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 121 DLRISLLVG---G-DSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 121 ~l~v~~l~g---g-~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
..--..+.. . .........+. +..+.++.-..- ..+.-..+.+|++||.|...
T Consensus 91 p~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~-------~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 91 PVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP-------SNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred HHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC-------cccccCCcCEEEEechhhcc
Confidence 211111111 0 11111111222 333444432211 23445678899999999975
No 250
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.92 E-value=0.16 Score=57.51 Aligned_cols=130 Identities=12% Similarity=0.116 Sum_probs=66.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~--PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~ 139 (786)
-++++|++|+|||.+..-.+. .+.. .|.++++++ |.|.-|.+ +++.++...++.+....++......
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~----~G~kV~lV~~D~~R~aA~e---QLk~~a~~~~vp~~~~~~~~dp~~i--- 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQR----KGFKPCLVCADTFRAGAFD---QLKQNATKARIPFYGSYTESDPVKI--- 170 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH----CCCCEEEEcCcccchhHHH---HHHHHhhccCCeEEeecCCCCHHHH---
Confidence 377899999999976543222 2332 255666555 34543333 4445555555655443333221110
Q ss_pred HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc-CChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHH
Q 003924 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAK 218 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~ 218 (786)
..+.+.. +.-..+++||+|=+-++-. ......+..+.....+..-++.++||........+.
T Consensus 171 --------------~~~~l~~---~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~ 233 (429)
T TIGR01425 171 --------------ASEGVEK---FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAK 233 (429)
T ss_pred --------------HHHHHHH---HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHH
Confidence 0001111 1113456777777765432 123455555555555555677788887655444444
Q ss_pred h
Q 003924 219 A 219 (786)
Q Consensus 219 ~ 219 (786)
.
T Consensus 234 ~ 234 (429)
T TIGR01425 234 A 234 (429)
T ss_pred H
Confidence 4
No 251
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.91 E-value=0.23 Score=57.15 Aligned_cols=110 Identities=15% Similarity=0.223 Sum_probs=60.4
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l 140 (786)
..+++.|++|+|||... ..+...+... ..+.+++++.+ .++...+...+..-.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~--~~~~~v~yv~~-~~f~~~~~~~l~~~~----------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN--FSDLKVSYMSG-DEFARKAVDILQKTH----------------------- 194 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh--CCCCeEEEEEH-HHHHHHHHHHHHHhh-----------------------
Confidence 45899999999999542 3444444332 23566766655 455555444332100
Q ss_pred cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccC-ChHHHHHHHHhhccc-CCceEEEeccCcHHH
Q 003924 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSE-NRQTLLFSATLPSAL 213 (786)
Q Consensus 141 ~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~-gf~~~l~~Il~~l~~-~~q~ll~SATl~~~l 213 (786)
+.+...... +.++++|||||+|.+... ...+.+..++..+.. ..|+|+.|-.+|..+
T Consensus 195 -----------~~~~~~~~~-----~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 -----------KEIEQFKNE-----ICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred -----------hHHHHHHHH-----hccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 011111111 346779999999987642 234556666665543 445665555555443
No 252
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.88 E-value=0.15 Score=61.60 Aligned_cols=94 Identities=17% Similarity=0.134 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHH-cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeccc
Q 003924 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE-EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (786)
Q Consensus 248 ~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~-~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~ 326 (786)
...|....+..+...+..+.++||.++|+..+..+.+.|.. .+..+..+||+++..+|...+.....|..+|+|+|..+
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsa 251 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSA 251 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHH
Confidence 34566666666766666788999999999999999988876 47889999999999999999999999999999999754
Q ss_pred ccccCCCCcceeEecC
Q 003924 327 ARGIDIPLLDNVINWD 342 (786)
Q Consensus 327 arGlDIp~v~~VI~~d 342 (786)
.- +.++++.+||..+
T Consensus 252 l~-~p~~~l~liVvDE 266 (679)
T PRK05580 252 LF-LPFKNLGLIIVDE 266 (679)
T ss_pred hc-ccccCCCEEEEEC
Confidence 32 4566788887443
No 253
>PRK12377 putative replication protein; Provisional
Probab=94.85 E-value=0.37 Score=50.87 Aligned_cols=107 Identities=19% Similarity=0.223 Sum_probs=57.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l 140 (786)
..+++.|++|+|||.... .+...+.. .+..+ ++++..+|..++...+.. +..
T Consensus 102 ~~l~l~G~~GtGKThLa~-AIa~~l~~----~g~~v-~~i~~~~l~~~l~~~~~~--------------~~~-------- 153 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAA-AIGNRLLA----KGRSV-IVVTVPDVMSRLHESYDN--------------GQS-------- 153 (248)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH----cCCCe-EEEEHHHHHHHHHHHHhc--------------cch--------
Confidence 579999999999996533 33334333 24444 444555666654433210 000
Q ss_pred cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCC-hHHHHHHHHhhccc-CCceEEEeccCcHHH
Q 003924 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSATLPSAL 213 (786)
Q Consensus 141 ~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~g-f~~~l~~Il~~l~~-~~q~ll~SATl~~~l 213 (786)
...++ . .+.++++|||||++...... -...+..|+..--. ...+|+.|-=.+..+
T Consensus 154 ----------~~~~l---~-----~l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~l 210 (248)
T PRK12377 154 ----------GEKFL---Q-----ELCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEAM 210 (248)
T ss_pred ----------HHHHH---H-----HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHHH
Confidence 00111 1 14578899999996543222 34455556655433 466777665444443
No 254
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.84 E-value=0.1 Score=62.92 Aligned_cols=70 Identities=20% Similarity=0.180 Sum_probs=52.0
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003924 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (786)
Q Consensus 44 ~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l 116 (786)
..+++-|+.|+- .....+++.|..|||||.+.+.-+...+... ...+.++|+|+.|+..|..+.+.+...
T Consensus 195 ~~L~~~Q~~av~--~~~~~~lV~agaGSGKT~vl~~r~ayLl~~~-~~~~~~IL~ltft~~AA~em~eRL~~~ 264 (684)
T PRK11054 195 SPLNPSQARAVV--NGEDSLLVLAGAGSGKTSVLVARAGWLLARG-QAQPEQILLLAFGRQAAEEMDERIRER 264 (684)
T ss_pred CCCCHHHHHHHh--CCCCCeEEEEeCCCCHHHHHHHHHHHHHHhC-CCCHHHeEEEeccHHHHHHHHHHHHHh
Confidence 479999999985 3345689999999999988654444333332 223568999999999999888877654
No 255
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.83 E-value=0.16 Score=53.20 Aligned_cols=43 Identities=21% Similarity=0.469 Sum_probs=25.8
Q ss_pred eeeEEeCCccccccC-ChHHHHHHHHhhccc-CCceEEEeccCcH
Q 003924 169 VEYVVFDEADCLFGM-GFAEQLHKILGQLSE-NRQTLLFSATLPS 211 (786)
Q Consensus 169 l~~vV~DEah~l~~~-gf~~~l~~Il~~l~~-~~q~ll~SATl~~ 211 (786)
+++|||||+|.+... .....+..++..+.. +...+++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 468999999997642 345556566655543 3324555555443
No 256
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.83 E-value=0.3 Score=51.73 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=25.0
Q ss_pred CChHHHHHHHHHHH----cCC-cEEEEcCCCChHHHHHH
Q 003924 45 VPTPIQRKTMPLIL----SGA-DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 45 ~ptpiQ~~aip~il----~g~-dvvl~a~TGSGKT~afl 78 (786)
.+++.+..++..+. .+. .+++.|++|+|||....
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 57777777776654 223 48899999999997644
No 257
>PRK09183 transposase/IS protein; Provisional
Probab=94.81 E-value=0.24 Score=52.69 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=28.4
Q ss_pred HHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHH
Q 003924 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (786)
Q Consensus 57 il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q 108 (786)
+..+..+++.||+|+|||........... . .|..++++. ..+|..+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~-~----~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAV-R----AGIKVRFTT-AADLLLQ 144 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHH-H----cCCeEEEEe-HHHHHHH
Confidence 45678899999999999975443333222 1 355566553 3445444
No 258
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.79 E-value=0.62 Score=51.93 Aligned_cols=128 Identities=13% Similarity=0.160 Sum_probs=61.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc--CcHH-HHHHHHHHHHHHccCCCCeEEEEEcCCChhHH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRD-LALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~--Ptre-La~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~ 136 (786)
++-+++.||+|+|||....-.+.. +.. .+.++.+++ |.|. -+.| ++.++...++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~-l~~----~g~~V~lItaDtyR~gAveQ----Lk~yae~lgvpv~----------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQ-LLK----QNRTVGFITTDTFRSGAVEQ----FQGYADKLDVELI----------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH----cCCeEEEEeCCccCccHHHH----HHHHhhcCCCCEE-----------
Confidence 345789999999999865544432 222 244454444 3332 1233 3334433333322
Q ss_pred HHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccC-ChHHHHHHHHhhcccCCceEEEeccCc-HHHH
Q 003924 137 FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLSENRQTLLFSATLP-SALA 214 (786)
Q Consensus 137 ~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~-gf~~~l~~Il~~l~~~~q~ll~SATl~-~~l~ 214 (786)
++.+|..+...+... -....+++|+||=+=+.... .....+..++..+.+..-++.+|||.. ..+.
T Consensus 266 ----------~~~dp~dL~~al~~l--~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~ 333 (407)
T PRK12726 266 ----------VATSPAELEEAVQYM--TYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVM 333 (407)
T ss_pred ----------ecCCHHHHHHHHHHH--HhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHH
Confidence 223445454444321 11245677888877654321 123344444444433333456677543 3444
Q ss_pred HHHHh
Q 003924 215 EFAKA 219 (786)
Q Consensus 215 ~~~~~ 219 (786)
.++..
T Consensus 334 ~i~~~ 338 (407)
T PRK12726 334 TILPK 338 (407)
T ss_pred HHHHh
Confidence 44433
No 259
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.75 E-value=0.14 Score=61.23 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=24.2
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEecc
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SAT 208 (786)
...+++||||+|.|....|. .|..+|+.-+....+|| ++|
T Consensus 118 gr~KVIIIDEah~LT~~A~N-ALLKtLEEPP~~v~FIL-aTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFN-AMLKTLEEPPPHVKFIL-ATT 157 (830)
T ss_pred CCceEEEEeChhhCCHHHHH-HHHHHHHhcCCCeEEEE-EEC
Confidence 45789999999998764333 34445555444444444 444
No 260
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.73 E-value=0.38 Score=47.17 Aligned_cols=131 Identities=24% Similarity=0.332 Sum_probs=77.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEE---EcC---cHHHHHHHHHHHHHHccCCCCeEEEEEcC-----C
Q 003924 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI---LSP---TRDLALQTLKFTKELGRYTDLRISLLVGG-----D 131 (786)
Q Consensus 63 vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LI---L~P---treLa~Q~~~~l~~l~~~~~l~v~~l~gg-----~ 131 (786)
+.+...+|.|||.+++--++..+.. |.+++| +=. +-|+ ..++.+ .++.+...-.+ .
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~-----g~~v~~vQFlKg~~~~gE~-----~~l~~l---~~v~~~~~g~~~~~~~~ 71 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGH-----GYRVGVVQFLKGGWKYGEL-----KALERL---PNIEIHRMGRGFFWTTE 71 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEEEeCCCCccCHH-----HHHHhC---CCcEEEECCCCCccCCC
Confidence 5667788999999887666655443 667777 322 2222 123333 23333321111 1
Q ss_pred ChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCCh--HHHHHHHHhhcccCCceEEEeccC
Q 003924 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATL 209 (786)
Q Consensus 132 ~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf--~~~l~~Il~~l~~~~q~ll~SATl 209 (786)
...+..... ...+....+ .+....+++||+||+=.....|+ .+.+..++..-|...-+|+.+-.+
T Consensus 72 ~~~~~~~~a-----------~~~~~~a~~--~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 72 NDEEDIAAA-----------AEGWAFAKE--AIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred ChHHHHHHH-----------HHHHHHHHH--HHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 111111110 122222222 23356789999999998877664 567888888888888888888889
Q ss_pred cHHHHHHHHh
Q 003924 210 PSALAEFAKA 219 (786)
Q Consensus 210 ~~~l~~~~~~ 219 (786)
|+.+.+.+..
T Consensus 139 p~~l~e~AD~ 148 (159)
T cd00561 139 PKELIEAADL 148 (159)
T ss_pred CHHHHHhCce
Confidence 9988877643
No 261
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.69 E-value=0.17 Score=55.59 Aligned_cols=35 Identities=17% Similarity=0.076 Sum_probs=27.7
Q ss_pred CChHHHHHHHHHHHcCC----cEEEEcCCCChHHHHHHH
Q 003924 45 VPTPIQRKTMPLILSGA----DVVAMARTGSGKTAAFLV 79 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~----dvvl~a~TGSGKT~afll 79 (786)
.++|+|...+..++... -.++.||.|+|||..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 35789999998888653 388999999999976553
No 262
>CHL00181 cbbX CbbX; Provisional
Probab=94.68 E-value=0.34 Score=52.32 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFLV 79 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afll 79 (786)
-++++.||+|+|||.++-.
T Consensus 60 ~~ill~G~pGtGKT~lAr~ 78 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALK 78 (287)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4589999999999986543
No 263
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.64 E-value=0.099 Score=59.08 Aligned_cols=136 Identities=17% Similarity=0.228 Sum_probs=76.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHH-HHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD-LALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptre-La~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l 140 (786)
-.++.|..|||||.+..+-++..+... ..+.++||+-|+.. |..-++..+.......++....-.....+. +. +
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~--~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~--i~-~ 77 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN--KKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSME--IK-I 77 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc--CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccE--EE-e
Confidence 368899999999998887777766653 13577999999886 666666766654433343211111111000 00 1
Q ss_pred cC-CCCEEEECc-HHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcc--cCCceEEEeccCcHH
Q 003924 141 AQ-NPDIIIATP-GRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS--ENRQTLLFSATLPSA 212 (786)
Q Consensus 141 ~~-~~dIiV~Tp-grll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~--~~~q~ll~SATl~~~ 212 (786)
.. +..|++..- +....+ .....+.++.+|||..+... .+..++..+. .....+++|.||+..
T Consensus 78 ~~~g~~i~f~g~~d~~~~i------k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 78 LNTGKKFIFKGLNDKPNKL------KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred cCCCeEEEeecccCChhHh------hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 11 333444332 111111 11234689999999987543 3444443343 233358899998653
No 264
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.63 E-value=0.14 Score=55.94 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=26.7
Q ss_pred ceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEe
Q 003924 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
..++|||||+|.+........+..++...+...++|+.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 457899999999843334556666777766666666544
No 265
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.54 E-value=0.04 Score=51.22 Aligned_cols=16 Identities=31% Similarity=0.310 Sum_probs=13.4
Q ss_pred eeeEEeCCccccccCC
Q 003924 169 VEYVVFDEADCLFGMG 184 (786)
Q Consensus 169 l~~vV~DEah~l~~~g 184 (786)
..+|+|||+|.+....
T Consensus 59 ~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKS 74 (132)
T ss_dssp SEEEEEETGGGTSHHC
T ss_pred ceeeeeccchhccccc
Confidence 4799999999988654
No 266
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.50 E-value=0.17 Score=59.13 Aligned_cols=92 Identities=14% Similarity=0.129 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc-CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccc
Q 003924 249 EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAA 327 (786)
Q Consensus 249 ~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~-g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~a 327 (786)
..|....+.++...+..+.++||.+++..-+..++..|... +..+..+||+++..+|..++....+|+.+|+|+|..+.
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsal 87 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSAL 87 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHH
Confidence 45666666667666667889999999999999999888764 67889999999999999999999999999999996543
Q ss_pred cccCCCCcceeEec
Q 003924 328 RGIDIPLLDNVINW 341 (786)
Q Consensus 328 rGlDIp~v~~VI~~ 341 (786)
- +.++++.+||..
T Consensus 88 f-~p~~~l~lIIVD 100 (505)
T TIGR00595 88 F-LPFKNLGLIIVD 100 (505)
T ss_pred c-CcccCCCEEEEE
Confidence 2 346677887743
No 267
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.49 E-value=0.19 Score=52.00 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=27.2
Q ss_pred ceeeEEeCCccccccCChHHHHHHHHhhcccCCc-eEEEeccCcH
Q 003924 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ-TLLFSATLPS 211 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q-~ll~SATl~~ 211 (786)
..++|||||+|.+... -...+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 3568999999987542 34455556655544444 5777777553
No 268
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.49 E-value=0.19 Score=53.29 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=41.7
Q ss_pred CCCCChHHHHHHHHHHH-------cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003924 42 GYKVPTPIQRKTMPLIL-------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (786)
Q Consensus 42 g~~~ptpiQ~~aip~il-------~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~ 114 (786)
.|......+..++..+. ++.++++.|++|+|||..+.....+.+ . .|. -++++++.+|+.++...+.
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~----~g~-sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K----AGI-SVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H----cCC-eEEEEEHHHHHHHHHHHHh
Confidence 44444445555443332 567999999999999976554444333 3 244 4566677788777665543
No 269
>PRK05973 replicative DNA helicase; Provisional
Probab=94.46 E-value=0.19 Score=52.51 Aligned_cols=84 Identities=20% Similarity=0.285 Sum_probs=52.0
Q ss_pred CCCCCHHHHHHHHHCCCC----------CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEE
Q 003924 27 SLNLSPNVFRAIKRKGYK----------VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRA 96 (786)
Q Consensus 27 ~lgLs~~ll~~l~~~g~~----------~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~ 96 (786)
.+.|+..+=+.-.+.||. .+||... .+--+..|.-+++.|++|+|||...+-.+.+.+. .|.++
T Consensus 22 ~~~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~-----~Ge~v 95 (237)
T PRK05973 22 NIPLHEALDRIAAEEGFSSWSLLAAKAAATTPAEE-LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMK-----SGRTG 95 (237)
T ss_pred CCcHHHHHHHHHHHhccchHHHHHHhccCCCCHHH-hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHh-----cCCeE
Confidence 455666666666667886 3455222 3333445567999999999999876655554433 26678
Q ss_pred EEEcCcHHHHHHHHHHHHHHc
Q 003924 97 LILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 97 LIL~PtreLa~Q~~~~l~~l~ 117 (786)
+|++-.-. ..|+.+.+..++
T Consensus 96 lyfSlEes-~~~i~~R~~s~g 115 (237)
T PRK05973 96 VFFTLEYT-EQDVRDRLRALG 115 (237)
T ss_pred EEEEEeCC-HHHHHHHHHHcC
Confidence 88874332 355555565553
No 270
>PRK10867 signal recognition particle protein; Provisional
Probab=94.46 E-value=0.17 Score=57.66 Aligned_cols=131 Identities=19% Similarity=0.204 Sum_probs=63.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH
Q 003924 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (786)
Q Consensus 63 vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~--PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l 140 (786)
++++|++|+|||.+..-.+. .+... .|.++++++ +.|.-+.. .++.++...++.+.....+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~-~l~~~---~G~kV~lV~~D~~R~aa~e---QL~~~a~~~gv~v~~~~~~~--------- 166 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAK-YLKKK---KKKKVLLVAADVYRPAAIE---QLKTLGEQIGVPVFPSGDGQ--------- 166 (433)
T ss_pred EEEECCCCCcHHHHHHHHHH-HHHHh---cCCcEEEEEccccchHHHH---HHHHHHhhcCCeEEecCCCC---------
Confidence 77899999999986553333 23221 245555554 34443332 23333333445443221111
Q ss_pred cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc-cCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHh
Q 003924 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (786)
Q Consensus 141 ~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~-~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (786)
.|..+...... ......+++||+|=+=++. +......+..+...+.+..-++.++||........+..
T Consensus 167 ---------dp~~i~~~a~~--~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~~a~~ 235 (433)
T PRK10867 167 ---------DPVDIAKAALE--EAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVNTAKA 235 (433)
T ss_pred ---------CHHHHHHHHHH--HHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHHHHHH
Confidence 12222211111 1122356678888776543 12233444555554444444667777766555555554
Q ss_pred c
Q 003924 220 G 220 (786)
Q Consensus 220 ~ 220 (786)
+
T Consensus 236 F 236 (433)
T PRK10867 236 F 236 (433)
T ss_pred H
Confidence 3
No 271
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.46 E-value=0.078 Score=64.12 Aligned_cols=69 Identities=14% Similarity=0.111 Sum_probs=52.5
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l 116 (786)
.++|-|++++.. ....++|.|..|||||.+.+.-+...+... .....++|+|+.|+..|..+.+.+..+
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGC-GYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhc-CCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 478999999864 346789999999999998665555544332 123457999999999999988877764
No 272
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.46 E-value=0.27 Score=52.26 Aligned_cols=18 Identities=22% Similarity=0.329 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
.++++.||+|+|||..+-
T Consensus 43 ~~vll~GppGtGKTtlA~ 60 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVAR 60 (261)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 468999999999997643
No 273
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.43 E-value=0.2 Score=57.39 Aligned_cols=49 Identities=18% Similarity=0.398 Sum_probs=30.5
Q ss_pred CceeeEEeCCccccccCC-hHHHHHHHHhhcc-cCCceEEEeccCcHHHHH
Q 003924 167 KSVEYVVFDEADCLFGMG-FAEQLHKILGQLS-ENRQTLLFSATLPSALAE 215 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~g-f~~~l~~Il~~l~-~~~q~ll~SATl~~~l~~ 215 (786)
.++++|||||+|.+.... ....+..++..+. ...++|+.|-+.|..+..
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 357799999999976532 3445555555442 356666666566666543
No 274
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.42 E-value=0.074 Score=58.67 Aligned_cols=35 Identities=23% Similarity=0.191 Sum_probs=22.7
Q ss_pred eeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccC
Q 003924 170 EYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (786)
Q Consensus 170 ~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl 209 (786)
-++++||+||+.. .-+.++-..-.+..++|+.||-
T Consensus 106 tiLflDEIHRfnK-----~QQD~lLp~vE~G~iilIGATT 140 (436)
T COG2256 106 TILFLDEIHRFNK-----AQQDALLPHVENGTIILIGATT 140 (436)
T ss_pred eEEEEehhhhcCh-----hhhhhhhhhhcCCeEEEEeccC
Confidence 3799999999543 2233332233567788999994
No 275
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=94.42 E-value=0.14 Score=62.07 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=66.2
Q ss_pred hccCCCcEEEEEcchhhHHHHHHHHH----HcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc-cccccCCCCcc
Q 003924 262 HISSDQQTLIFVSTKHHVEFLNVLFR----EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-AARGIDIPLLD 336 (786)
Q Consensus 262 ~~~~~~k~IVF~~t~~~ae~l~~~L~----~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv-~arGlDIp~v~ 336 (786)
.+..+.+++|.++|+.-|...+..+. ..++.+..+||+++..+|..++....+|+.+|+|+|.. +...+.++.+.
T Consensus 306 ~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~ 385 (681)
T PRK10917 306 AIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLG 385 (681)
T ss_pred HHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccc
Confidence 34567899999999988887766655 44788999999999999999999999999999999975 55567788888
Q ss_pred eeEe
Q 003924 337 NVIN 340 (786)
Q Consensus 337 ~VI~ 340 (786)
+||.
T Consensus 386 lvVI 389 (681)
T PRK10917 386 LVII 389 (681)
T ss_pred eEEE
Confidence 8884
No 276
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.36 E-value=0.26 Score=53.91 Aligned_cols=144 Identities=20% Similarity=0.240 Sum_probs=71.5
Q ss_pred CCCChHHHHHHHHHHHc----CC---cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHH
Q 003924 43 YKVPTPIQRKTMPLILS----GA---DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKE 115 (786)
Q Consensus 43 ~~~ptpiQ~~aip~il~----g~---dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~ 115 (786)
|..++|+|..++..+.. ++ -.++.||.|+||+..+... ...|...... +.. .|+...+ + .
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~l-A~~LlC~~~~-~~~---~c~~c~~-------~-~ 68 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALAL-AEHVLASGPD-PAA---AQRTRQL-------I-A 68 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHH-HHHHhCCCCC-CCC---cchHHHH-------H-h
Confidence 56788999999987763 33 3889999999999765533 3333332111 110 1222111 1 1
Q ss_pred HccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhcc-CCCCCceeeEEeCCccccccCChHHHHHHHHh
Q 003924 116 LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE-DMSLKSVEYVVFDEADCLFGMGFAEQLHKILG 194 (786)
Q Consensus 116 l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~-~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~ 194 (786)
-+.+.++.+.......... .....|.| +.+..+..... .-......++|||+||.|... ....+..+++
T Consensus 69 ~g~HPD~~~i~~~p~~~~~------k~~~~I~i---dqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~-AaNaLLKtLE 138 (319)
T PRK08769 69 AGTHPDLQLVSFIPNRTGD------KLRTEIVI---EQVREISQKLALTPQYGIAQVVIVDPADAINRA-ACNALLKTLE 138 (319)
T ss_pred cCCCCCEEEEecCCCcccc------cccccccH---HHHHHHHHHHhhCcccCCcEEEEeccHhhhCHH-HHHHHHHHhh
Confidence 1333444433211100000 00011221 22222222111 112346789999999998654 3445555666
Q ss_pred hcccCCceEEEeccC
Q 003924 195 QLSENRQTLLFSATL 209 (786)
Q Consensus 195 ~l~~~~q~ll~SATl 209 (786)
.=|.+..+||.|..+
T Consensus 139 EPp~~~~fiL~~~~~ 153 (319)
T PRK08769 139 EPSPGRYLWLISAQP 153 (319)
T ss_pred CCCCCCeEEEEECCh
Confidence 655566666666543
No 277
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.33 E-value=0.031 Score=55.69 Aligned_cols=123 Identities=19% Similarity=0.274 Sum_probs=52.9
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCC
Q 003924 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN 143 (786)
Q Consensus 64 vl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~ 143 (786)
|+.|+-|-|||.+.-+.+...+.. ...+++|.+|+.+=+..+++.+..-....+++...... ...........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~----~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~ 73 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK----GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKR---IGQIIKLRFNK 73 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------EEEE-SS--S-HHHHHCC-----------------------------C
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh----cCceEEEecCCHHHHHHHHHHHHhhccccccccccccc---ccccccccccc
Confidence 678999999998765444332222 12579999999998888777654433333332200000 00000111235
Q ss_pred CCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccC
Q 003924 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (786)
Q Consensus 144 ~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl 209 (786)
..|-+..|+.+... ....+++|||||=.+. ...+..++. ....++||.|.
T Consensus 74 ~~i~f~~Pd~l~~~--------~~~~DlliVDEAAaIp----~p~L~~ll~----~~~~vv~stTi 123 (177)
T PF05127_consen 74 QRIEFVAPDELLAE--------KPQADLLIVDEAAAIP----LPLLKQLLR----RFPRVVFSTTI 123 (177)
T ss_dssp CC--B--HHHHCCT------------SCEEECTGGGS-----HHHHHHHHC----CSSEEEEEEEB
T ss_pred ceEEEECCHHHHhC--------cCCCCEEEEechhcCC----HHHHHHHHh----hCCEEEEEeec
Confidence 66777777766321 2245799999997643 345555543 33467778887
No 278
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.32 E-value=0.32 Score=50.72 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=32.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
.|.-+++.|++|+|||...+..+...+. .+.++++++.. +-..+..+.+..++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~-----~g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQ-----NGYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-----CCCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 4667999999999999865444443322 35678888843 23344444444444
No 279
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.27 E-value=0.36 Score=54.47 Aligned_cols=125 Identities=17% Similarity=0.149 Sum_probs=64.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~--PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~ 139 (786)
-++++||+|+|||....-.+...... .|.++.++. +.|..+.+ .+..++...++.+..
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~----~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~------------- 284 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLH----MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYP------------- 284 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh----cCCeEEEecccchhhhHHH---HHHHHHHhcCCCeee-------------
Confidence 37789999999998765444333222 244454444 33444443 333443333332211
Q ss_pred HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc-cCChHHHHHHHHhhcc---cCCceEEEeccCcH-HHH
Q 003924 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLS---ENRQTLLFSATLPS-ALA 214 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~-~~gf~~~l~~Il~~l~---~~~q~ll~SATl~~-~l~ 214 (786)
+..+..+...+. -...++||||=+-+.. +..-...+..++.... +...++.+|||... .+.
T Consensus 285 --------~~~~~~l~~~l~------~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~ 350 (432)
T PRK12724 285 --------VKDIKKFKETLA------RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTL 350 (432)
T ss_pred --------hHHHHHHHHHHH------hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHH
Confidence 001122222221 2456789999776542 2223445555554432 22456788999865 555
Q ss_pred HHHHhc
Q 003924 215 EFAKAG 220 (786)
Q Consensus 215 ~~~~~~ 220 (786)
..+..+
T Consensus 351 ~~~~~f 356 (432)
T PRK12724 351 TVLKAY 356 (432)
T ss_pred HHHHHh
Confidence 555544
No 280
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.23 E-value=0.21 Score=53.72 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
+.++++||||+|||.+..
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357899999999997654
No 281
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.20 E-value=0.19 Score=57.81 Aligned_cols=21 Identities=29% Similarity=0.224 Sum_probs=16.4
Q ss_pred CcEEEEcCCCChHHHHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPM 81 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpi 81 (786)
.-+++.||||+|||.+....+
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA 277 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLA 277 (484)
T ss_pred cEEEEECCCCccHHHHHHHHH
Confidence 447899999999998765443
No 282
>PLN03025 replication factor C subunit; Provisional
Probab=94.19 E-value=0.43 Score=52.30 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=24.8
Q ss_pred ceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEecc
Q 003924 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SAT 208 (786)
...+|||||+|.|... ....+..++...+....+++ +++
T Consensus 99 ~~kviiiDE~d~lt~~-aq~aL~~~lE~~~~~t~~il-~~n 137 (319)
T PLN03025 99 RHKIVILDEADSMTSG-AQQALRRTMEIYSNTTRFAL-ACN 137 (319)
T ss_pred CeEEEEEechhhcCHH-HHHHHHHHHhcccCCceEEE-EeC
Confidence 4789999999998653 24455555655555555444 444
No 283
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.12 E-value=0.36 Score=57.58 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=21.9
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEE
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll 204 (786)
....++||||+|+|....+ ..|..++..-|....+||
T Consensus 118 g~~KV~IIDEah~Ls~~a~-NALLKtLEEPp~~v~FIL 154 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSF-NALLKTLEEPPEHVKFLL 154 (647)
T ss_pred CCCEEEEEechHhCCHHHH-HHHHHHHHcCCCCeEEEE
Confidence 4578999999999875433 333334444343333343
No 284
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.11 E-value=0.24 Score=60.85 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=28.8
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcH
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~ 211 (786)
...++|||||+|+|.... ...|..+|...+....+||.+ |-+.
T Consensus 119 ~~~KV~IIDEad~lt~~a-~NaLLK~LEEpP~~~~fIl~t-t~~~ 161 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG-FNALLKIVEEPPEHLKFIFAT-TEPD 161 (824)
T ss_pred CCceEEEEechhhcCHHH-HHHHHHHHhCCCCCeEEEEEe-CChh
Confidence 567899999999987643 345666666666666555554 5433
No 285
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.09 E-value=0.28 Score=58.13 Aligned_cols=42 Identities=26% Similarity=0.277 Sum_probs=25.8
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCc
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~ 210 (786)
....++||||+|+|.... ...+..++..-+....+| |.+|-+
T Consensus 117 gk~KV~IIDEVh~LS~~A-~NALLKtLEEPP~~v~FI-LaTtd~ 158 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS-FNALLKTLEEPPEHVKFL-FATTDP 158 (702)
T ss_pred CCcEEEEEechHhcCHHH-HHHHHHHHhcCCCCcEEE-EEECCh
Confidence 456899999999887543 334555555555445444 444533
No 286
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.08 E-value=0.31 Score=53.47 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=25.2
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEe
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
....+|||||+|.+.. .....+..++...+....+|+.+
T Consensus 124 ~~~~vlilDe~~~l~~-~~~~~L~~~le~~~~~~~~Il~~ 162 (337)
T PRK12402 124 ADYKTILLDNAEALRE-DAQQALRRIMEQYSRTCRFIIAT 162 (337)
T ss_pred CCCcEEEEeCcccCCH-HHHHHHHHHHHhccCCCeEEEEe
Confidence 4567999999998754 23445666666666556555543
No 287
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.07 E-value=0.54 Score=53.95 Aligned_cols=49 Identities=24% Similarity=0.500 Sum_probs=29.4
Q ss_pred ceeeEEeCCccccccCC-hHHHHHHHHhhccc-CCceEEEeccCcHHHHHH
Q 003924 168 SVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSATLPSALAEF 216 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~g-f~~~l~~Il~~l~~-~~q~ll~SATl~~~l~~~ 216 (786)
.+++|||||+|.+.+.. ....+..++..+.. ..++|+.|-..|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 46789999999876532 33445555555443 445555555566655444
No 288
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.04 E-value=0.18 Score=57.31 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=22.6
Q ss_pred ceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccC
Q 003924 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl 209 (786)
...+|+|||+|++.. .+...++..+. ...++++.+|.
T Consensus 92 ~~~vL~IDEi~~l~~----~~q~~LL~~le-~~~iilI~att 128 (413)
T PRK13342 92 RRTILFIDEIHRFNK----AQQDALLPHVE-DGTITLIGATT 128 (413)
T ss_pred CceEEEEechhhhCH----HHHHHHHHHhh-cCcEEEEEeCC
Confidence 456899999999653 23333444443 35566676664
No 289
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=93.95 E-value=0.7 Score=56.21 Aligned_cols=41 Identities=20% Similarity=0.318 Sum_probs=23.7
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcc-cCCceEEEecc
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLS-ENRQTLLFSAT 208 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~-~~~q~ll~SAT 208 (786)
..+.+|||||+|.|... ....|..++.... ...+++++..+
T Consensus 868 r~v~IIILDEID~L~kK-~QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 868 RNVSILIIDEIDYLITK-TQKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred ccceEEEeehHhhhCcc-HHHHHHHHHHHhhccCCeEEEEEec
Confidence 34668999999998864 2344444444321 24455554444
No 290
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.92 E-value=0.45 Score=50.99 Aligned_cols=131 Identities=19% Similarity=0.262 Sum_probs=64.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~--PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~ 138 (786)
+-+++.|++|+|||.+..-.+. .+.. .+.+++++. +.|.-+.+ .+..++...++.+.....+..
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~-~l~~----~g~~V~li~~D~~r~~a~~---ql~~~~~~~~i~~~~~~~~~d------ 138 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLAN-KLKK----QGKSVLLAAGDTFRAAAIE---QLEEWAKRLGVDVIKQKEGAD------ 138 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-HHHh----cCCEEEEEeCCCCCHHHHH---HHHHHHHhCCeEEEeCCCCCC------
Confidence 3477889999999986554333 2322 355666665 33433322 233333333333321111111
Q ss_pred HHcCCCCEEEECcHHH-HHHHhhccCCCCCceeeEEeCCcccccc-CChHHHHHHHHhhcc------cCCceEEEeccCc
Q 003924 139 ELAQNPDIIIATPGRL-MHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLS------ENRQTLLFSATLP 210 (786)
Q Consensus 139 ~l~~~~dIiV~Tpgrl-l~~l~~~~~l~l~~l~~vV~DEah~l~~-~gf~~~l~~Il~~l~------~~~q~ll~SATl~ 210 (786)
|..+ ...+. ......+++||+|=+-++.. ......+..+....+ +.--++.++||..
T Consensus 139 ------------p~~~~~~~l~---~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~ 203 (272)
T TIGR00064 139 ------------PAAVAFDAIQ---KAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG 203 (272)
T ss_pred ------------HHHHHHHHHH---HHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC
Confidence 1111 11111 11134567888887766542 223345555555444 4556788888876
Q ss_pred HHHHHHHHhc
Q 003924 211 SALAEFAKAG 220 (786)
Q Consensus 211 ~~l~~~~~~~ 220 (786)
......+..+
T Consensus 204 ~~~~~~~~~f 213 (272)
T TIGR00064 204 QNALEQAKVF 213 (272)
T ss_pred HHHHHHHHHH
Confidence 5544444443
No 291
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.92 E-value=0.22 Score=52.10 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=36.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
|.-+++.|++|+|||...+-.+.+.+. .|.+++|++- -+-..|+.+.+..++
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~-----~ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQ-----MGEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH-----cCCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 466999999999999876655665553 2667888883 445566666666665
No 292
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.92 E-value=0.52 Score=53.71 Aligned_cols=131 Identities=23% Similarity=0.228 Sum_probs=62.8
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc-C-cHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS-P-TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~-P-treLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~ 139 (786)
-++++|++|+|||.+..-.+.. +... .|.+++++. . .|.-+.+ .+..++...++.+.....+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~-l~~~---~g~kV~lV~~D~~R~~a~~---QL~~~a~~~gvp~~~~~~~~~------- 166 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYY-LKKK---QGKKVLLVACDLYRPAAIE---QLKVLGQQVGVPVFALGKGQS------- 166 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHH-HHHh---CCCeEEEEeccccchHHHH---HHHHHHHhcCCceEecCCCCC-------
Confidence 3778999999999875533332 2211 244555444 3 3433332 233334334454433222121
Q ss_pred HcCCCCEEEECcHHHH-HHHhhccCCCCCceeeEEeCCcccccc-CChHHHHHHHHhhcccCCceEEEeccCcHHHHHHH
Q 003924 140 LAQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFA 217 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll-~~l~~~~~l~l~~l~~vV~DEah~l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~ 217 (786)
|..+. ..+. .+....+++||+|=+-++.. ......+..+...+.+.--++.++||........+
T Consensus 167 -----------P~~i~~~al~---~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a 232 (428)
T TIGR00959 167 -----------PVEIARRALE---YAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTA 232 (428)
T ss_pred -----------HHHHHHHHHH---HHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHH
Confidence 11111 1111 11123456788887766431 22334444555444444446667777665555555
Q ss_pred Hhc
Q 003924 218 KAG 220 (786)
Q Consensus 218 ~~~ 220 (786)
..+
T Consensus 233 ~~f 235 (428)
T TIGR00959 233 KTF 235 (428)
T ss_pred HHH
Confidence 443
No 293
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.90 E-value=0.3 Score=50.57 Aligned_cols=107 Identities=21% Similarity=0.345 Sum_probs=60.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHc
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~ 141 (786)
.+++.|++|+|||-. +..+...+... .++.+++++... +........+..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~--~~~~~v~y~~~~-~f~~~~~~~~~~-------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQ--HPGKRVVYLSAE-EFIREFADALRD-------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHH--CTTS-EEEEEHH-HHHHHHHHHHHT--------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhc--cccccceeecHH-HHHHHHHHHHHc--------------------------
Confidence 489999999999973 44444444432 135566666543 444333333221
Q ss_pred CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccC-ChHHHHHHHHhhcc-cCCceEEEeccCcHHH
Q 003924 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFAEQLHKILGQLS-ENRQTLLFSATLPSAL 213 (786)
Q Consensus 142 ~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~-gf~~~l~~Il~~l~-~~~q~ll~SATl~~~l 213 (786)
.....+.+. +..+++||||.+|.+... .....+..++..+. .+.++|+.|..+|..+
T Consensus 86 -------~~~~~~~~~--------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 -------GEIEEFKDR--------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp -------TSHHHHHHH--------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred -------ccchhhhhh--------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 011112211 346789999999998753 23556666666654 3567777776777653
No 294
>PF05729 NACHT: NACHT domain
Probab=93.88 E-value=0.37 Score=46.50 Aligned_cols=45 Identities=20% Similarity=0.248 Sum_probs=25.6
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCC-eEEEEEcCcHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGG-VRALILSPTRDLAL 107 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g-~r~LIL~PtreLa~ 107 (786)
-+++.|++|+|||... .-++..+........ ..+++..+.+.+..
T Consensus 2 ~l~I~G~~G~GKStll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLL-RKLAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEEECCCCCChHHHH-HHHHHHHHhcCcccccceEEEEEeehhhhh
Confidence 4789999999999754 344444444322222 23455555444443
No 295
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.14 Score=56.27 Aligned_cols=131 Identities=20% Similarity=0.260 Sum_probs=75.0
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHc----CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEE
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILS----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRA 96 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~----g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~ 96 (786)
...+|+..=|++.|-+.|...-..+ ..--. -+++++.||+|+|||+++
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aT---------aNTK~h~apfRNilfyGPPGTGKTm~A------------------- 401 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIAT---------ANTKKHQAPFRNILFYGPPGTGKTMFA------------------- 401 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHh---------cccccccchhhheeeeCCCCCCchHHH-------------------
Confidence 3456777778888777765432110 00001 168999999999999742
Q ss_pred EEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCC
Q 003924 97 LILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (786)
Q Consensus 97 LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DE 176 (786)
++++...|+...+++||+-..--... |+-...|+++.... ..==+|.|||
T Consensus 402 -----------------relAr~SGlDYA~mTGGDVAPlG~qa--------VTkiH~lFDWakkS-----~rGLllFIDE 451 (630)
T KOG0742|consen 402 -----------------RELARHSGLDYAIMTGGDVAPLGAQA--------VTKIHKLFDWAKKS-----RRGLLLFIDE 451 (630)
T ss_pred -----------------HHHHhhcCCceehhcCCCccccchHH--------HHHHHHHHHHHhhc-----ccceEEEehh
Confidence 23444567888889998753322111 22223344433321 1111688999
Q ss_pred ccccccC--------ChHHHHHHHHhhcc-cCCceEEEeccC
Q 003924 177 ADCLFGM--------GFAEQLHKILGQLS-ENRQTLLFSATL 209 (786)
Q Consensus 177 ah~l~~~--------gf~~~l~~Il~~l~-~~~q~ll~SATl 209 (786)
||-++.. .-...|+.+|-... .++.++|.=||-
T Consensus 452 ADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtN 493 (630)
T KOG0742|consen 452 ADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATN 493 (630)
T ss_pred hHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccC
Confidence 9976631 12344555554443 367788888884
No 296
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=93.80 E-value=0.34 Score=47.61 Aligned_cols=44 Identities=25% Similarity=0.257 Sum_probs=29.5
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcH
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~ 211 (786)
....++||||||.|... ....|..+++.-|....+||.|..+..
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~~~ 144 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNPSK 144 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-GGG
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECChHH
Confidence 46789999999997653 355666666666667777776665543
No 297
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.79 E-value=0.067 Score=58.58 Aligned_cols=58 Identities=24% Similarity=0.475 Sum_probs=37.2
Q ss_pred cCCCCCccCCCCCHHHHHHHHHC------CC--------CCChHHHHHH------HHHHHcC-----CcEEEEcCCCChH
Q 003924 19 KSKSGGFESLNLSPNVFRAIKRK------GY--------KVPTPIQRKT------MPLILSG-----ADVVAMARTGSGK 73 (786)
Q Consensus 19 ~~~~~~f~~lgLs~~ll~~l~~~------g~--------~~ptpiQ~~a------ip~il~g-----~dvvl~a~TGSGK 73 (786)
+.+...|++++....|..+|..- ++ ..--.+-.+| +|....| +.|++.||+|+||
T Consensus 179 ~~~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGK 258 (491)
T KOG0738|consen 179 KGEDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGK 258 (491)
T ss_pred ccccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcH
Confidence 34677899999998998888752 11 0111111122 2334455 6799999999999
Q ss_pred HHH
Q 003924 74 TAA 76 (786)
Q Consensus 74 T~a 76 (786)
|+.
T Consensus 259 TlL 261 (491)
T KOG0738|consen 259 TLL 261 (491)
T ss_pred HHH
Confidence 973
No 298
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=93.78 E-value=0.28 Score=58.86 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=92.5
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHcCC--cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 003924 35 FRAIKRKGYKVPTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (786)
Q Consensus 35 l~~l~~~g~~~ptpiQ~~aip~il~g~--dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~ 112 (786)
-..|.....+.+..-|.+.+..++..+ -+++.|.-|=|||++.-+.+. .+..... ..+++|.+|+.+=+..++++
T Consensus 204 ~~~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~~--~~~iiVTAP~~~nv~~Lf~f 280 (758)
T COG1444 204 PRELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLAG--SVRIIVTAPTPANVQTLFEF 280 (758)
T ss_pred CHHHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhcC--CceEEEeCCCHHHHHHHHHH
Confidence 344566666777777777888888764 488999999999998776662 2222211 45799999999998888887
Q ss_pred HHHHccCCCCeEEEEEcC--CChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHH
Q 003924 113 TKELGRYTDLRISLLVGG--DSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190 (786)
Q Consensus 113 l~~l~~~~~l~v~~l~gg--~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~ 190 (786)
+.+-....|++..+.... ..... -.....|=+-+|.... . --++||+|||=-+- ...+.
T Consensus 281 a~~~l~~lg~~~~v~~d~~g~~~~~----~~~~~~i~y~~P~~a~----------~-~~DllvVDEAAaIp----lplL~ 341 (758)
T COG1444 281 AGKGLEFLGYKRKVAPDALGEIREV----SGDGFRIEYVPPDDAQ----------E-EADLLVVDEAAAIP----LPLLH 341 (758)
T ss_pred HHHhHHHhCCccccccccccceeee----cCCceeEEeeCcchhc----------c-cCCEEEEehhhcCC----hHHHH
Confidence 766555555443222211 11000 0112335556665431 1 15689999997643 34444
Q ss_pred HHHhhcccCCceEEEeccCc
Q 003924 191 KILGQLSENRQTLLFSATLP 210 (786)
Q Consensus 191 ~Il~~l~~~~q~ll~SATl~ 210 (786)
.++. ..+.++||.|+.
T Consensus 342 ~l~~----~~~rv~~sTTIh 357 (758)
T COG1444 342 KLLR----RFPRVLFSTTIH 357 (758)
T ss_pred HHHh----hcCceEEEeeec
Confidence 4443 335688899973
No 299
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.75 E-value=0.24 Score=56.84 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.6
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 003924 63 VVAMARTGSGKTAAFLVPM 81 (786)
Q Consensus 63 vvl~a~TGSGKT~afllpi 81 (786)
+++.||.|+|||.++.+.+
T Consensus 43 ~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6999999999998765443
No 300
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.75 E-value=0.72 Score=56.50 Aligned_cols=43 Identities=26% Similarity=0.198 Sum_probs=25.1
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcH
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~ 211 (786)
....++||||||+|... ....|..++..-|....+|+. .|-+.
T Consensus 118 gk~KViIIDEAh~LT~e-AqNALLKtLEEPP~~vrFILa-TTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRS-SFNALLKTLEEPPEHVKFLLA-TTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCHH-HHHHHHHHHhccCCCeEEEEE-CCCch
Confidence 45779999999998642 233444455544444544443 44433
No 301
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.75 E-value=0.14 Score=61.88 Aligned_cols=90 Identities=14% Similarity=0.068 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEE
Q 003924 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRIS 125 (786)
Q Consensus 46 ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~ 125 (786)
++|-|++++.. ...++++.|..|||||.+.+--+...+.... ....++|+|+.|+..|.++.+.+..+....
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~-~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~----- 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG-YKARNIAAVTFTNKAAREMKERVAKTLGKG----- 73 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHhCcc-----
Confidence 78999999854 3568999999999999987666665554321 234579999999999999888776643110
Q ss_pred EEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHh
Q 003924 126 LLVGGDSMESQFEELAQNPDIIIATPGRLMHHLS 159 (786)
Q Consensus 126 ~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~ 159 (786)
....|.|+|..+|...+.
T Consensus 74 ----------------~~~~v~v~TfHs~a~~il 91 (664)
T TIGR01074 74 ----------------EARGLTISTFHTLGLDII 91 (664)
T ss_pred ----------------ccCCeEEEeHHHHHHHHH
Confidence 113577888887755443
No 302
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.68 E-value=0.17 Score=52.44 Aligned_cols=131 Identities=20% Similarity=0.210 Sum_probs=67.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC-------CCeEEEEEcCCC
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT-------DLRISLLVGGDS 132 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~-------~l~v~~l~gg~~ 132 (786)
|.-+++.|++|||||...+-.+.+.+... |.++++++-. +-..++.+.+..++... .+.+.-+.....
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~----ge~vlyvs~e-e~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNF----GEKVLYVSFE-EPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHH----T--EEEEESS-S-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhc----CCcEEEEEec-CCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 46699999999999987776666665541 4568888732 23345555555443110 111111111000
Q ss_pred hhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc----CChHHHHHHHHhhcccCCceEEEecc
Q 003924 133 MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG----MGFAEQLHKILGQLSENRQTLLFSAT 208 (786)
Q Consensus 133 ~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~----~gf~~~l~~Il~~l~~~~q~ll~SAT 208 (786)
.. . -..+..++..+.. .+.-...+.||||-...+.. ..+...+..+...+.....+.++++.
T Consensus 94 --~~--------~--~~~~~~l~~~i~~--~i~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~ 159 (226)
T PF06745_consen 94 --GW--------S--PNDLEELLSKIRE--AIEELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSE 159 (226)
T ss_dssp --T---------T--SCCHHHHHHHHHH--HHHHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred --cc--------c--ccCHHHHHHHHHH--HHHhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEc
Confidence 00 0 1122333333332 11112237899999887732 22455666777777666666677766
Q ss_pred C
Q 003924 209 L 209 (786)
Q Consensus 209 l 209 (786)
.
T Consensus 160 ~ 160 (226)
T PF06745_consen 160 M 160 (226)
T ss_dssp E
T ss_pred c
Confidence 3
No 303
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.68 E-value=0.15 Score=62.39 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=72.3
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCe
Q 003924 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123 (786)
Q Consensus 44 ~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~ 123 (786)
..++|-|++++.. ....++|.|..|||||.+.+--+...+.... ....++|+|+-|+..|..+.+.+..+...
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-i~P~~IL~lTFT~kAA~em~~Rl~~~~~~---- 75 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-VAPWNILAITFTNKAAREMKERVEKLLGP---- 75 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-CCHHHeeeeeccHHHHHHHHHHHHHHhcc----
Confidence 3589999999864 3467999999999999886655554443321 22457999999999999988877765311
Q ss_pred EEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhcc-C-CCCCceeeEEeCCccc
Q 003924 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVE-D-MSLKSVEYVVFDEADC 179 (786)
Q Consensus 124 v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~-~-l~l~~l~~vV~DEah~ 179 (786)
....+.|+|..+|...+.... . +.+ .-.+-|+|+.+.
T Consensus 76 ------------------~~~~~~i~TFHs~~~~iLr~~~~~~g~-~~~f~i~d~~~~ 114 (726)
T TIGR01073 76 ------------------VAEDIWISTFHSMCVRILRRDIDRIGI-NRNFSIIDPTDQ 114 (726)
T ss_pred ------------------ccCCcEEEcHHHHHHHHHHHHHHHhCC-CCCCCcCCHHHH
Confidence 013577899887754433311 1 111 123457787764
No 304
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.67 E-value=0.13 Score=62.70 Aligned_cols=71 Identities=17% Similarity=0.119 Sum_probs=53.7
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 44 ~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
..++|-|++++.. ....++|.|..|||||.+...-+...+... .....++|+|+.|+..|..+.+.+..+.
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~-~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVE-NASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-CCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 3689999999864 346799999999999988655554444322 2234579999999999999888887754
No 305
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.65 E-value=0.43 Score=49.75 Aligned_cols=47 Identities=26% Similarity=0.245 Sum_probs=31.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc---CcHHHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS---PTRDLALQT 109 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~---PtreLa~Q~ 109 (786)
.|.-+++.|++|+|||...+--+++.+.. .+..++|++ |..+++..+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~----~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK----QGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCceEEEeCCCCHHHHHHHH
Confidence 45668999999999997655444444333 266788888 444555443
No 306
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.63 E-value=0.14 Score=55.61 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=55.1
Q ss_pred ccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCC-cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcH
Q 003924 25 FESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGA-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (786)
Q Consensus 25 f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~-dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptr 103 (786)
|.-..+++..+....-..|..+++-|...+-.+...+ +++++|-||||||... ..|....+ ..-+++.|--|.
T Consensus 137 lsIRKf~k~~ltl~dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-----Nal~~~i~-~~eRvItiEDta 210 (355)
T COG4962 137 LSIRKFPKIKLTLLDLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-----NALSGFID-SDERVITIEDTA 210 (355)
T ss_pred ccccccccccccHHHHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-----HHHHhcCC-CcccEEEEeehh
Confidence 3333455555555555578899999999998888776 9999999999999732 22222222 233899999999
Q ss_pred HHHHH
Q 003924 104 DLALQ 108 (786)
Q Consensus 104 eLa~Q 108 (786)
||-.+
T Consensus 211 ELql~ 215 (355)
T COG4962 211 ELQLA 215 (355)
T ss_pred hhccC
Confidence 98554
No 307
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.62 E-value=0.42 Score=53.36 Aligned_cols=27 Identities=26% Similarity=0.513 Sum_probs=19.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhc
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH 88 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~ 88 (786)
.++++.|+||+|||++. --+++.+...
T Consensus 43 ~n~~iyG~~GTGKT~~~-~~v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATV-KFVMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHH-HHHHHHHHhh
Confidence 35999999999999873 3455555543
No 308
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.58 E-value=0.41 Score=53.91 Aligned_cols=25 Identities=24% Similarity=0.461 Sum_probs=17.9
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHh
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLN 86 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~ 86 (786)
..+++.|++|+|||.+.- -++..+.
T Consensus 56 ~~~lI~G~~GtGKT~l~~-~v~~~l~ 80 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK-KVFEELE 80 (394)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 569999999999998633 3344443
No 309
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.55 E-value=0.74 Score=49.64 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
.++++.||+|+|||.++.
T Consensus 59 ~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred ceEEEEcCCCCCHHHHHH
Confidence 479999999999997653
No 310
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.52 E-value=0.5 Score=46.92 Aligned_cols=55 Identities=18% Similarity=0.341 Sum_probs=43.9
Q ss_pred CCCceeeEEeCCccccccCCh--HHHHHHHHhhcccCCceEEEeccCcHHHHHHHHh
Q 003924 165 SLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (786)
Q Consensus 165 ~l~~l~~vV~DEah~l~~~gf--~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (786)
.-..+++||+||+-.....|+ .+.+..++..-|+..-+|+..-.+|+.+.+.+..
T Consensus 94 ~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~ 150 (173)
T TIGR00708 94 ADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADL 150 (173)
T ss_pred hcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCce
Confidence 345789999999998887775 4577788888888888888888889988887654
No 311
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=93.51 E-value=0.23 Score=57.72 Aligned_cols=71 Identities=21% Similarity=0.171 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHc-----C----CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHcc
Q 003924 48 PIQRKTMPLILS-----G----ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (786)
Q Consensus 48 piQ~~aip~il~-----g----~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~ 118 (786)
|+|.-.+-.++. | +.+++.-+=|-|||......++..+... ...+..+++++++++-|..+++.+..+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~-g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD-GEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC-CccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 678888877772 2 3488888999999975444444333322 23467899999999999999998887654
Q ss_pred C
Q 003924 119 Y 119 (786)
Q Consensus 119 ~ 119 (786)
.
T Consensus 80 ~ 80 (477)
T PF03354_consen 80 A 80 (477)
T ss_pred h
Confidence 4
No 312
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.48 E-value=0.37 Score=57.11 Aligned_cols=41 Identities=20% Similarity=0.247 Sum_probs=25.4
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEec
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SA 207 (786)
....+++||||+|+|....+. .|..+|+.-+....+||.|-
T Consensus 122 ~gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEeC
Confidence 345789999999998764443 34444444444555555543
No 313
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.45 E-value=0.17 Score=61.86 Aligned_cols=70 Identities=16% Similarity=0.146 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
.++|-|++++.. ....++|.|..|||||.+...-+...+... .....++|+|+-|+..|..+.+.+..+.
T Consensus 9 ~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 9 SLNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVE-NASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred hcCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-CCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 589999999863 346799999999999988655555444322 1234579999999999999988887754
No 314
>PRK06904 replicative DNA helicase; Validated
Probab=93.42 E-value=0.75 Score=53.26 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=58.5
Q ss_pred HHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcC--CChh
Q 003924 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG--DSME 134 (786)
Q Consensus 57 il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg--~~~~ 134 (786)
+..|.-+|+.|+||.|||...+ -+...+... .+..++|++.... ..|+...+-.. ..++....+..| .+.+
T Consensus 218 l~~G~LiiIaarPg~GKTafal-nia~~~a~~---~g~~Vl~fSlEMs-~~ql~~Rlla~--~s~v~~~~i~~g~~l~~~ 290 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFAM-NLCENAAMA---SEKPVLVFSLEMP-AEQIMMRMLAS--LSRVDQTKIRTGQNLDQQ 290 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHHH-HHHHHHHHh---cCCeEEEEeccCC-HHHHHHHHHHh--hCCCCHHHhccCCCCCHH
Confidence 3345568899999999997543 333333221 2556888875422 33443332221 122332223333 2222
Q ss_pred HH------HHHHcCCCCEEEE-----CcHHHHHHHhhccCCCCCceeeEEeCCcccccc
Q 003924 135 SQ------FEELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (786)
Q Consensus 135 ~~------~~~l~~~~dIiV~-----Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~ 182 (786)
++ +..+...+.+.|- |+..+...+.... .....+++||||=.+.+..
T Consensus 291 e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~~ 348 (472)
T PRK06904 291 DWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVY-RENGGLSLIMVDYLQLMRA 348 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEecHHhcCC
Confidence 22 1223334556653 4444443333210 1112578999999887753
No 315
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=93.38 E-value=0.24 Score=59.49 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=65.5
Q ss_pred ccCCCcEEEEEcchhhHHHHHHHHHH----cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc-cccccCCCCcce
Q 003924 263 ISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-AARGIDIPLLDN 337 (786)
Q Consensus 263 ~~~~~k~IVF~~t~~~ae~l~~~L~~----~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv-~arGlDIp~v~~ 337 (786)
+..+.+++|.++|+.-+..++..+.. .++.+..+||+++...|..++....+|+.+|+|+|.. +...+++.++.+
T Consensus 281 ~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~l 360 (630)
T TIGR00643 281 IEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLAL 360 (630)
T ss_pred HHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccce
Confidence 44678999999999988887766654 4789999999999999999999999999999999975 445677788888
Q ss_pred eEe
Q 003924 338 VIN 340 (786)
Q Consensus 338 VI~ 340 (786)
||.
T Consensus 361 vVI 363 (630)
T TIGR00643 361 VII 363 (630)
T ss_pred EEE
Confidence 884
No 316
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.38 E-value=0.8 Score=46.21 Aligned_cols=141 Identities=16% Similarity=0.200 Sum_probs=80.7
Q ss_pred HcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc------CcHHHHHHHHHHHHHHccCCCCeEEEEEcCC
Q 003924 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS------PTRDLALQTLKFTKELGRYTDLRISLLVGGD 131 (786)
Q Consensus 58 l~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~------PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~ 131 (786)
+....+++...+|.|||.+++--++..+.. |.+++|+- .+-|+ ..+..+ .++.+.. .|.
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~-----G~~V~ivQFlKg~~~~GE~-----~~l~~l---~~v~~~~--~g~ 84 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGH-----GKKVGVVQFIKGAWSTGER-----NLLEFG---GGVEFHV--MGT 84 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHC-----CCeEEEEEEecCCCccCHH-----HHHhcC---CCcEEEE--CCC
Confidence 355679999999999999887666655543 56666653 11121 112221 1222222 121
Q ss_pred ChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCCh--HHHHHHHHhhcccCCceEEEeccC
Q 003924 132 SMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATL 209 (786)
Q Consensus 132 ~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf--~~~l~~Il~~l~~~~q~ll~SATl 209 (786)
...-. ..+.+.-+......+..... .+.-..+++||+||+-..++.|+ .+.+..++..-|...-+|+.--.+
T Consensus 85 ~~~~~----~~~~~e~~~~~~~~~~~a~~--~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 85 GFTWE----TQDRERDIAAAREGWEEAKR--MLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred CCccc----CCCcHHHHHHHHHHHHHHHH--HHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11000 00000000111122333332 23346789999999998888775 567778888888787888877778
Q ss_pred cHHHHHHHHh
Q 003924 210 PSALAEFAKA 219 (786)
Q Consensus 210 ~~~l~~~~~~ 219 (786)
|+.+.+.+..
T Consensus 159 p~~Lie~ADl 168 (191)
T PRK05986 159 PRELIEAADL 168 (191)
T ss_pred CHHHHHhCch
Confidence 8888877654
No 317
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.35 E-value=0.51 Score=55.75 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=31.1
Q ss_pred CceeeEEeCCccccccCC-hHHHHHHHHhhccc-CCceEEEeccCcHHHH
Q 003924 167 KSVEYVVFDEADCLFGMG-FAEQLHKILGQLSE-NRQTLLFSATLPSALA 214 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~g-f~~~l~~Il~~l~~-~~q~ll~SATl~~~l~ 214 (786)
.++++||||++|.+.... ....+..++..+.. +.++|+.|-..|..+.
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 357899999999886432 34555566666554 4677766665565543
No 318
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=93.33 E-value=0.17 Score=51.90 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=29.7
Q ss_pred CCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEecc
Q 003924 164 MSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (786)
Q Consensus 164 l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SAT 208 (786)
++.....+||+||||.|.+ |....+...+......++..|...+
T Consensus 109 lp~grhKIiILDEADSMT~-gAQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 109 LPPGRHKIIILDEADSMTA-GAQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CCCCceeEEEeeccchhhh-HHHHHHHHHHHHHcccchhhhhhcc
Confidence 4446678999999998765 5566666666666555555554444
No 319
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.31 E-value=0.5 Score=55.15 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=25.6
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEe
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
...+++||||+|.|....| ..+..++...|....+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4578999999999876443 34555666655555555544
No 320
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.26 E-value=0.51 Score=52.73 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=22.3
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEE
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~ 205 (786)
....++||||+|.+....+ ..+...+..-|....+|+.
T Consensus 118 ~~~kviIIDEa~~l~~~a~-naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSF-NALLKTLEEPPQHIKFILA 155 (363)
T ss_pred CCceEEEEEChhhcCHHHH-HHHHHHHhcCCCCeEEEEE
Confidence 4567999999999865332 2344444444444444443
No 321
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.25 E-value=0.45 Score=57.18 Aligned_cols=94 Identities=17% Similarity=0.155 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc-C-CCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc
Q 003924 248 QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-G-LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (786)
Q Consensus 248 ~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~-g-~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv 325 (786)
...|....+.++...+..+.++||.++....+..+...|... + ..+..+|++++..+|...+....+|+.+|+|.|-.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 357888899999998888999999999999999999988765 3 56899999999999999999999999999999966
Q ss_pred cccccCCCCcceeEecC
Q 003924 326 AARGIDIPLLDNVINWD 342 (786)
Q Consensus 326 ~arGlDIp~v~~VI~~d 342 (786)
+. =+-++++..||..+
T Consensus 250 Av-FaP~~~LgLIIvdE 265 (665)
T PRK14873 250 AV-FAPVEDLGLVAIWD 265 (665)
T ss_pred eE-EeccCCCCEEEEEc
Confidence 42 23445677777544
No 322
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=93.24 E-value=0.26 Score=63.65 Aligned_cols=124 Identities=16% Similarity=0.135 Sum_probs=77.6
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHH-ccCCCCe
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL-GRYTDLR 123 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l-~~~~~l~ 123 (786)
+.|+-|.++|. ..+.++++.|..|||||.+.+--++..+... ....++|+|+=|+..|..+.+.+..- .....-
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~--~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~- 75 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG--VDIDRLLVVTFTNAAAREMKERIEEALQKALQQ- 75 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC--CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhc-
Confidence 36899999997 4688999999999999998777777666543 12246999999999998888766542 211100
Q ss_pred EEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCC-ceeeEEeCCccc
Q 003924 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLK-SVEYVVFDEADC 179 (786)
Q Consensus 124 v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~-~l~~vV~DEah~ 179 (786)
........+.+..-...-|+|...|...+.+.....+. +..+=|.||...
T Consensus 76 ------~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 76 ------EPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred ------CchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00111122233334567799998876555442211110 123456887764
No 323
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.15 E-value=1.2 Score=49.43 Aligned_cols=25 Identities=32% Similarity=0.515 Sum_probs=18.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHh
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLN 86 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~ 86 (786)
..+++.||+|+|||.+. -.++..+.
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l~ 65 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKELE 65 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHHH
Confidence 56999999999999764 33444443
No 324
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.05 E-value=0.036 Score=52.62 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHH
Q 003924 62 DVVAMARTGSGKTAA 76 (786)
Q Consensus 62 dvvl~a~TGSGKT~a 76 (786)
+|++.|++|+|||..
T Consensus 1 ~vlL~G~~G~GKt~l 15 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTL 15 (139)
T ss_dssp EEEEEESSSSSHHHH
T ss_pred CEEEECCCCCCHHHH
Confidence 489999999999974
No 325
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.01 E-value=0.27 Score=53.82 Aligned_cols=67 Identities=19% Similarity=0.347 Sum_probs=44.9
Q ss_pred HHHHHHCCCCCChHHHHHHHHHH-HcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHH
Q 003924 35 FRAIKRKGYKVPTPIQRKTMPLI-LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (786)
Q Consensus 35 l~~l~~~g~~~ptpiQ~~aip~i-l~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa 106 (786)
+..|...|+ +++.|...+..+ ..+..+++.|+||||||. ++-.++..+... ....++++|-.+.||.
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~--~~~~rivtIEd~~El~ 191 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKTT-LVNAIINEMVIQ--DPTERVFIIEDTGEIQ 191 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHH-HHHHHHHhhhhc--CCCceEEEEcCCCccc
Confidence 445555665 567788887654 456789999999999995 344444443211 2345788888888873
No 326
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.01 E-value=0.46 Score=56.79 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=24.7
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEe
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
+....+|||||+|.|.... ...|..++..-+....+||.+
T Consensus 117 ~gk~KVIIIDEad~Ls~~A-~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSA-FNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHH-HHHHHHHHHhCCCCcEEEEEe
Confidence 3467899999999876432 334555555545555555544
No 327
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.00 E-value=0.28 Score=53.34 Aligned_cols=39 Identities=31% Similarity=0.355 Sum_probs=23.9
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEe
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
....+||+||||.|.. +....+...+..-+.+..+++.+
T Consensus 108 ~~~kviiidead~mt~-~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 108 GGYKVVIIDEADKLTE-DAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCceEEEeCcHHHHhH-HHHHHHHHHhccCCCCeEEEEEc
Confidence 5688999999999875 23344444444444444444444
No 328
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.89 E-value=0.8 Score=53.01 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=25.2
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcH
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~ 211 (786)
.....++||||+|.|....+ ..+...+..-|+...+| |.+|-+.
T Consensus 114 ~~~~KVvIIDEah~Ls~~A~-NaLLK~LEePp~~v~fI-latte~~ 157 (491)
T PRK14964 114 SSKFKVYIIDEVHMLSNSAF-NALLKTLEEPAPHVKFI-LATTEVK 157 (491)
T ss_pred cCCceEEEEeChHhCCHHHH-HHHHHHHhCCCCCeEEE-EEeCChH
Confidence 35788999999998865332 33444444444443344 4445333
No 329
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=92.89 E-value=0.23 Score=54.07 Aligned_cols=105 Identities=18% Similarity=0.142 Sum_probs=59.2
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHc
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~ 141 (786)
.+|++||+|+|||..+- .|...+.....+.+=++-|.+-+..+.+.++.-- .
T Consensus 164 SmIlWGppG~GKTtlAr-----lia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq-------------------~---- 215 (554)
T KOG2028|consen 164 SMILWGPPGTGKTTLAR-----LIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQ-------------------N---- 215 (554)
T ss_pred ceEEecCCCCchHHHHH-----HHHhhcCCCceEEEEEeccccchHHHHHHHHHHH-------------------H----
Confidence 69999999999997543 1222222334566667776665555555444311 0
Q ss_pred CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHh
Q 003924 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (786)
Q Consensus 142 ~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (786)
.......--++.+||+|| |...-+.++--.-.+--++|..||-.+.-..+..+
T Consensus 216 --------------------~~~l~krkTilFiDEiHR-----FNksQQD~fLP~VE~G~I~lIGATTENPSFqln~a 268 (554)
T KOG2028|consen 216 --------------------EKSLTKRKTILFIDEIHR-----FNKSQQDTFLPHVENGDITLIGATTENPSFQLNAA 268 (554)
T ss_pred --------------------HHhhhcceeEEEeHHhhh-----hhhhhhhcccceeccCceEEEecccCCCccchhHH
Confidence 011122334789999999 44444444333334667888889864433333333
No 330
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.87 E-value=0.32 Score=50.21 Aligned_cols=17 Identities=24% Similarity=0.251 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
++++.||+|+|||..+.
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 59999999999997443
No 331
>PF13173 AAA_14: AAA domain
Probab=92.86 E-value=0.7 Score=43.29 Aligned_cols=37 Identities=19% Similarity=0.329 Sum_probs=24.8
Q ss_pred ceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEec
Q 003924 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SA 207 (786)
.-.+|+|||+|.+.+ +...+..+.... ++.++++.+.
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS 97 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGS 97 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEcc
Confidence 445899999999864 667777777654 3455554433
No 332
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.84 E-value=0.34 Score=53.04 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=43.8
Q ss_pred HHHHCCCCCChHHHHHHHHHHH-cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHH
Q 003924 37 AIKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (786)
Q Consensus 37 ~l~~~g~~~ptpiQ~~aip~il-~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa 106 (786)
.+...|+ +++.|...+..++ .+.+++++|+||||||.. +-.++..+... ..+.+++++-.+.||.
T Consensus 122 ~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~--~~~~rivtiEd~~El~ 187 (323)
T PRK13833 122 DYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVAS--APEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcC--CCCceEEEecCCcccc
Confidence 3445564 5677887776555 457899999999999964 34455544321 1345788888888874
No 333
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.82 E-value=0.59 Score=55.54 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=25.5
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEe
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
+....+|||||+|.|.... ...|...+...|....+||.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a-~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAA-FNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHH-HHHHHHHHHhCCCCeEEEEEe
Confidence 4567899999999987532 334444555555555555544
No 334
>PRK04195 replication factor C large subunit; Provisional
Probab=92.78 E-value=0.75 Score=53.48 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afl 78 (786)
.+.+++.||+|+|||....
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3569999999999997543
No 335
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.74 E-value=0.38 Score=59.92 Aligned_cols=91 Identities=13% Similarity=0.064 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHH----cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEec-
Q 003924 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD- 324 (786)
Q Consensus 250 ~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~----~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTd- 324 (786)
.|....+..+...+..+.+++|.++|..-|...+..+.. .++.+..++|..+..++..++..+..|+.+|+|+|.
T Consensus 484 GKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ 563 (926)
T TIGR00580 484 GKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK 563 (926)
T ss_pred cHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH
Confidence 344433333333334578999999999999988877665 356778899999999999999999999999999996
Q ss_pred ccccccCCCCcceeEe
Q 003924 325 VAARGIDIPLLDNVIN 340 (786)
Q Consensus 325 v~arGlDIp~v~~VI~ 340 (786)
.+...+.+.++.+||.
T Consensus 564 ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 564 LLQKDVKFKDLGLLII 579 (926)
T ss_pred HhhCCCCcccCCEEEe
Confidence 4556778888888884
No 336
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.74 E-value=0.4 Score=58.24 Aligned_cols=41 Identities=22% Similarity=0.193 Sum_probs=25.2
Q ss_pred ceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcHHH
Q 003924 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSAL 213 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l 213 (786)
...+|||||+|++... +...++..+ ...++++.+||-++..
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~l-E~g~IiLI~aTTenp~ 149 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWV-ENGTITLIGATTENPY 149 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHh-cCceEEEEEecCCChH
Confidence 4568999999996532 222333333 3466788888865443
No 337
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.71 E-value=0.29 Score=49.16 Aligned_cols=92 Identities=21% Similarity=0.260 Sum_probs=54.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~ 139 (786)
|.-.++.||+.||||...+.-+- +... .|.++++..|...- .+ +...+.-.-|.+
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~-~~~~----~g~~v~vfkp~iD~---------R~----~~~~V~Sr~G~~------- 58 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRAR-RYKE----AGMKVLVFKPAIDT---------RY----GVGKVSSRIGLS------- 58 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHH-HHHH----cCCeEEEEeccccc---------cc----ccceeeeccCCc-------
Confidence 34468999999999986443222 2222 47789999984321 01 111111111222
Q ss_pred HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
.+.++|-.+..+++++.... . ...+++|.||||+-+.
T Consensus 59 ---~~A~~i~~~~~i~~~i~~~~-~-~~~~~~v~IDEaQF~~ 95 (201)
T COG1435 59 ---SEAVVIPSDTDIFDEIAALH-E-KPPVDCVLIDEAQFFD 95 (201)
T ss_pred ---ccceecCChHHHHHHHHhcc-c-CCCcCEEEEehhHhCC
Confidence 24567777778888877522 1 2227899999999643
No 338
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.61 E-value=1.1 Score=48.94 Aligned_cols=51 Identities=20% Similarity=0.162 Sum_probs=30.4
Q ss_pred CCceeeEEeCCccccccCChH--HHHHHHHhh-cccCCceEEEeccCcHHHHHH
Q 003924 166 LKSVEYVVFDEADCLFGMGFA--EQLHKILGQ-LSENRQTLLFSATLPSALAEF 216 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~--~~l~~Il~~-l~~~~q~ll~SATl~~~l~~~ 216 (786)
+..+++|||||.....-..+. ..+..|+.. +.....|++.|--.+..+...
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~ 268 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHH 268 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHH
Confidence 456789999999754322232 334555543 345667777776666655543
No 339
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.60 E-value=0.8 Score=52.24 Aligned_cols=56 Identities=23% Similarity=0.178 Sum_probs=33.0
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC
Q 003924 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (786)
Q Consensus 42 g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P 101 (786)
|+....+---+.+.-+..|.-+++.|+||+|||...+-.+...... .+..++|++.
T Consensus 176 gi~tG~~~LD~~~~G~~~g~liviag~pg~GKT~~al~ia~~~a~~----~g~~v~~fSl 231 (421)
T TIGR03600 176 GLSTGLPKLDRLTNGLVKGDLIVIGARPSMGKTTLALNIAENVALR----EGKPVLFFSL 231 (421)
T ss_pred ceeCCChhHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh----CCCcEEEEEC
Confidence 4444444333444333445668999999999997655443333222 3556888873
No 340
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.54 E-value=0.63 Score=51.72 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=26.9
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEec
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SA 207 (786)
.....+|||||||.|.... ...+..++..-|....+|++|.
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILISH 179 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEEC
Confidence 3467799999999986533 3456666666555555566553
No 341
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=92.54 E-value=2.7 Score=50.10 Aligned_cols=147 Identities=13% Similarity=0.153 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHH---cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCC--
Q 003924 47 TPIQRKTMPLIL---SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-- 121 (786)
Q Consensus 47 tpiQ~~aip~il---~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~-- 121 (786)
.|.=..=|..++ ..+-.|+.+|-|-|||.+..+.+...+.. .+.+++|.+|...-+.++++.+..+....+
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f----~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~ 246 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF----LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHK 246 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh----cCCeEEEECCChhhHHHHHHHHHHHHHHhccc
Confidence 444444444444 45678899999999998765554433322 367899999999989998887666544211
Q ss_pred ------CeEEEEEcCCCh-hHHH-HHHc-CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHH
Q 003924 122 ------LRISLLVGGDSM-ESQF-EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKI 192 (786)
Q Consensus 122 ------l~v~~l~gg~~~-~~~~-~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~I 192 (786)
-.+..+.||... .-.. .... +...|..++.+ .....-..+++||+|||.-+-. ..+..|
T Consensus 247 ~~fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars--------~~s~RG~~~DLLIVDEAAfI~~----~~l~aI 314 (752)
T PHA03333 247 PWFPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS--------PNAARGQNPDLVIVDEAAFVNP----GALLSV 314 (752)
T ss_pred cccCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc--------CCCcCCCCCCEEEEECcccCCH----HHHHHH
Confidence 112223333210 0000 0000 11223332221 1122223568999999998765 344444
Q ss_pred Hhhcc-cCCceEEEeccC
Q 003924 193 LGQLS-ENRQTLLFSATL 209 (786)
Q Consensus 193 l~~l~-~~~q~ll~SATl 209 (786)
+-.+. .+.+++++|.+-
T Consensus 315 lP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 315 LPLMAVKGTKQIHISSPV 332 (752)
T ss_pred HHHHccCCCceEEEeCCC
Confidence 43333 356677777775
No 342
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.50 E-value=3 Score=41.03 Aligned_cols=54 Identities=24% Similarity=0.220 Sum_probs=27.8
Q ss_pred CceeeEEeCCccccc-cCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhc
Q 003924 167 KSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAG 220 (786)
Q Consensus 167 ~~l~~vV~DEah~l~-~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~ 220 (786)
...++||+|...... +......+..+........-++.++|+.+......+..+
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 356688888887643 112333444443333344455566666555444444443
No 343
>PRK10436 hypothetical protein; Provisional
Probab=92.41 E-value=0.32 Score=55.94 Aligned_cols=39 Identities=36% Similarity=0.434 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHc--CCcEEEEcCCCChHHHHHHHHHHHHHh
Q 003924 47 TPIQRKTMPLILS--GADVVAMARTGSGKTAAFLVPMLQRLN 86 (786)
Q Consensus 47 tpiQ~~aip~il~--g~dvvl~a~TGSGKT~afllpile~L~ 86 (786)
.+.|...+..++. +.-+++.||||||||.+. ..++..+.
T Consensus 203 ~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 203 TPAQLAQFRQALQQPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 3445555544443 345889999999999864 34555543
No 344
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.39 E-value=0.75 Score=52.09 Aligned_cols=19 Identities=32% Similarity=0.207 Sum_probs=15.7
Q ss_pred EEEEcCCCChHHHHHHHHH
Q 003924 63 VVAMARTGSGKTAAFLVPM 81 (786)
Q Consensus 63 vvl~a~TGSGKT~afllpi 81 (786)
+++.||.|+|||.++.+.+
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999998766443
No 345
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.32 E-value=0.66 Score=49.14 Aligned_cols=138 Identities=26% Similarity=0.284 Sum_probs=72.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc---HHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT---RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQ 136 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt---reLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~ 136 (786)
|.-+++.|+||.|||...+-.+...+..+ +..++|++.. .+++..+... . .++....+..|.-....
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~----~~~vly~SlEm~~~~l~~R~la~---~---s~v~~~~i~~g~l~~~e 88 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNG----GYPVLYFSLEMSEEELAARLLAR---L---SGVPYNKIRSGDLSDEE 88 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTT----SSEEEEEESSS-HHHHHHHHHHH---H---HTSTHHHHHCCGCHHHH
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhc----CCeEEEEcCCCCHHHHHHHHHHH---h---hcchhhhhhccccCHHH
Confidence 34589999999999987665555554432 5679999864 3443333222 1 12222222223222332
Q ss_pred HH-------HHcCCCCEEEECcH----HHHHHHhhccCCCCCceeeEEeCCccccccC----ChHHHHHHHHhhcc----
Q 003924 137 FE-------ELAQNPDIIIATPG----RLMHHLSEVEDMSLKSVEYVVFDEADCLFGM----GFAEQLHKILGQLS---- 197 (786)
Q Consensus 137 ~~-------~l~~~~dIiV~Tpg----rll~~l~~~~~l~l~~l~~vV~DEah~l~~~----gf~~~l~~Il~~l~---- 197 (786)
+. .+...+-++..+|+ .+...+.... .....+++||||=.|.+... +....+..+...+.
T Consensus 89 ~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~-~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~ 167 (259)
T PF03796_consen 89 FERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLK-REGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAK 167 (259)
T ss_dssp HHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHH-HHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHH-hhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 22 23333334445443 4544444321 11267899999999987753 23444555544332
Q ss_pred -cCCceEEEecc
Q 003924 198 -ENRQTLLFSAT 208 (786)
Q Consensus 198 -~~~q~ll~SAT 208 (786)
.+..++++|-.
T Consensus 168 ~~~i~vi~~sQl 179 (259)
T PF03796_consen 168 ELNIPVIALSQL 179 (259)
T ss_dssp HHTSEEEEEEEB
T ss_pred HcCCeEEEcccc
Confidence 25556666554
No 346
>PTZ00293 thymidine kinase; Provisional
Probab=92.31 E-value=0.82 Score=46.89 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptr 103 (786)
|.-.++.||++||||.-.+-. +.+... .+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~-i~~y~~----ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRL-VKRFTY----SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHH-HHHHHH----cCCceEEEEecc
Confidence 455788999999999754433 333222 366788998854
No 347
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.25 E-value=0.52 Score=55.96 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=26.2
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcH
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~ 211 (786)
.....++||||+|.|.... ...|..++..-|....+|+ .+|-+.
T Consensus 117 ~~~~KVvIIdev~~Lt~~a-~naLLk~LEepp~~~~fIl-~t~~~~ 160 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA-FNALLKTLEEPPPHVKFIF-ATTEPH 160 (576)
T ss_pred cCCceEEEEEChhhCCHHH-HHHHHHHHHcCCCCeEEEE-EeCChh
Confidence 4567899999999876532 3445555555444444444 345333
No 348
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.23 E-value=1.1 Score=54.74 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=28.4
Q ss_pred eeeEEeCCccccccCCh----HHHHHHHHhhcccCCceEEEeccCcHHH
Q 003924 169 VEYVVFDEADCLFGMGF----AEQLHKILGQLSENRQTLLFSATLPSAL 213 (786)
Q Consensus 169 l~~vV~DEah~l~~~gf----~~~l~~Il~~l~~~~q~ll~SATl~~~l 213 (786)
-.+|+|||+|.+...|. ...+..++..+-....+.++.||-+++.
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~ 327 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF 327 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHH
Confidence 34899999999875442 3344445554444556667777765543
No 349
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.22 E-value=0.15 Score=59.96 Aligned_cols=168 Identities=20% Similarity=0.216 Sum_probs=94.5
Q ss_pred CChHHHHHHHHHHHc--------CC--cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003924 45 VPTPIQRKTMPLILS--------GA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (786)
Q Consensus 45 ~ptpiQ~~aip~il~--------g~--dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~ 114 (786)
.++..|.+++-..-+ |. .+++-.-.|.||--+..-.|++.... ...++|+++-+..|-....+.+.
T Consensus 264 ~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLk----GRKrAlW~SVSsDLKfDAERDL~ 339 (1300)
T KOG1513|consen 264 HLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLK----GRKRALWFSVSSDLKFDAERDLR 339 (1300)
T ss_pred chhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhc----ccceeEEEEeccccccchhhchh
Confidence 467889888866553 22 25665555665543323334454433 36789999999888777766777
Q ss_pred HHccCCCCeEEEEE----cCCChhHHHHHHcCCCCEEEECcHHHHHHHhhc------------cCCCCCceeeEEeCCcc
Q 003924 115 ELGRYTDLRISLLV----GGDSMESQFEELAQNPDIIIATPGRLMHHLSEV------------EDMSLKSVEYVVFDEAD 178 (786)
Q Consensus 115 ~l~~~~~l~v~~l~----gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~------------~~l~l~~l~~vV~DEah 178 (786)
.++ .+++.|..+. +..+.++.- .-.--||++|+..|.-..... ..+.-..-++|||||||
T Consensus 340 Dig-A~~I~V~alnK~KYakIss~en~---n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECH 415 (1300)
T KOG1513|consen 340 DIG-ATGIAVHALNKFKYAKISSKENT---NTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECH 415 (1300)
T ss_pred hcC-CCCccceehhhcccccccccccC---CccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhh
Confidence 665 2334444331 111111100 012349999997554322210 01112233689999999
Q ss_pred ccccC---------ChHHHHHHHHhhcccCCceEEEeccC---cHHHHHHHHhcC
Q 003924 179 CLFGM---------GFAEQLHKILGQLSENRQTLLFSATL---PSALAEFAKAGL 221 (786)
Q Consensus 179 ~l~~~---------gf~~~l~~Il~~l~~~~q~ll~SATl---~~~l~~~~~~~l 221 (786)
..-.. .....+.++-..|| +.+++.-|||= |..+..+.+.++
T Consensus 416 kAKNL~p~~~~k~TKtG~tVLdLQk~LP-~ARVVYASATGAsEPrNMaYM~RLGl 469 (1300)
T KOG1513|consen 416 KAKNLVPTAGAKSTKTGKTVLDLQKKLP-NARVVYASATGASEPRNMAYMVRLGL 469 (1300)
T ss_pred hhcccccccCCCcCcccHhHHHHHHhCC-CceEEEeeccCCCCcchhhhhhhhcc
Confidence 75431 13456666666676 77899999984 555555555443
No 350
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.18 E-value=1 Score=53.45 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=26.8
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcH
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~ 211 (786)
.....++||||+|.|.... ...|..++...|....+||.+ |-+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A-~NALLK~LEEpp~~~~fIL~t-te~~ 159 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAG-FNALLKIVEEPPEHLIFIFAT-TEPE 159 (584)
T ss_pred cCCceEEEEECCCcCCHHH-HHHHHHHHhcCCCCeEEEEEe-CChH
Confidence 3567899999999987543 334445555545444445444 5443
No 351
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.13 E-value=1.2 Score=45.96 Aligned_cols=52 Identities=17% Similarity=0.222 Sum_probs=31.2
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l 116 (786)
.|.-+++.|++|+|||...+..+.+.+. .+..+++++-. +.+.++......+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~-----~g~~~~~is~e-~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLR-----DGDPVIYVTTE-ESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHh-----cCCeEEEEEcc-CCHHHHHHHHHHh
Confidence 3567999999999999765544444432 24567777642 2334444444443
No 352
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.10 E-value=0.46 Score=54.28 Aligned_cols=40 Identities=33% Similarity=0.500 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHcCCc--EEEEcCCCChHHHHHHHHHHHHHhh
Q 003924 47 TPIQRKTMPLILSGAD--VVAMARTGSGKTAAFLVPMLQRLNQ 87 (786)
Q Consensus 47 tpiQ~~aip~il~g~d--vvl~a~TGSGKT~afllpile~L~~ 87 (786)
.|.|...+-.++.... +++.||||||||.+ +..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 5677777777776543 88999999999986 4455555543
No 353
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.08 E-value=0.8 Score=45.90 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=23.8
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEecc
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SAT 208 (786)
.....+|||||+|.+... ....+...+...++..- ++|.++
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~~-~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNTL-FILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCeE-EEEEEC
Confidence 456789999999998653 23344455554333333 334443
No 354
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=92.02 E-value=0.44 Score=57.38 Aligned_cols=95 Identities=19% Similarity=0.130 Sum_probs=78.9
Q ss_pred eecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHH-cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEE
Q 003924 244 FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE-EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322 (786)
Q Consensus 244 ~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~-~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVa 322 (786)
.-+....|.+..+.++.+.+..+.++||.++-+.....+...|.. .|..+..+|++|++.+|.....+..+|+.+|+|.
T Consensus 223 ~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIG 302 (730)
T COG1198 223 DGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIG 302 (730)
T ss_pred eCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEE
Confidence 445567889999999999999999999999998888777776664 4788999999999999999999999999999999
Q ss_pred ecccccccCCCCcceeE
Q 003924 323 TDVAARGIDIPLLDNVI 339 (786)
Q Consensus 323 Tdv~arGlDIp~v~~VI 339 (786)
|--+- =.-++++..||
T Consensus 303 tRSAl-F~Pf~~LGLII 318 (730)
T COG1198 303 TRSAL-FLPFKNLGLII 318 (730)
T ss_pred echhh-cCchhhccEEE
Confidence 96542 12344677777
No 355
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.02 E-value=0.84 Score=53.62 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=24.5
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEe
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
.....++||||+|.|....+ ..+...+...|....+||.+
T Consensus 117 ~~~~kVvIIDEad~ls~~a~-naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cCCceEEEEcCcccCCHHHH-HHHHHHHhCCCCCEEEEEEe
Confidence 34678999999999875332 33444455544455555544
No 356
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=91.97 E-value=0.24 Score=61.08 Aligned_cols=144 Identities=20% Similarity=0.215 Sum_probs=79.2
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCC-hHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEE
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVP-TPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~p-tpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL 99 (786)
..-+|++.|....++..|+.+-+.-+ +|-+-.-+ .|---+.|+++||.|+|||+..- .|..+....+.++.
T Consensus 260 ~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~-~itpPrgvL~~GppGTGkTl~ar-----aLa~~~s~~~~kis-- 331 (1080)
T KOG0732|consen 260 SSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNF-NITPPRGVLFHGPPGTGKTLMAR-----ALAAACSRGNRKIS-- 331 (1080)
T ss_pred cccCccccccHHHHHHHHHHHHHhHhhhhhHhhhc-ccCCCcceeecCCCCCchhHHHH-----hhhhhhcccccccc--
Confidence 45689999999999999988743221 11111111 11223679999999999998533 22211111111100
Q ss_pred cCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccc
Q 003924 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (786)
Q Consensus 100 ~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~ 179 (786)
. ++.. |-.+ -.--|+..+|=+.++.+ ...-....+|.|||+|-
T Consensus 332 -------f----fmrk-----gaD~-------------------lskwvgEaERqlrllFe--eA~k~qPSIIffdeIdG 374 (1080)
T KOG0732|consen 332 -------F----FMRK-----GADC-------------------LSKWVGEAERQLRLLFE--EAQKTQPSIIFFDEIDG 374 (1080)
T ss_pred -------h----hhhc-----Cchh-------------------hccccCcHHHHHHHHHH--HHhccCceEEecccccc
Confidence 0 0000 0000 01125555555555543 23345667899999995
Q ss_pred cccC----------ChHHHHHHHHhhcccCCceEEEeccC
Q 003924 180 LFGM----------GFAEQLHKILGQLSENRQTLLFSATL 209 (786)
Q Consensus 180 l~~~----------gf~~~l~~Il~~l~~~~q~ll~SATl 209 (786)
+.-. .....+..++.-++.--|+++.+||.
T Consensus 375 lapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 375 LAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred ccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 5421 13344555556667778999999996
No 357
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.88 E-value=1.9 Score=50.70 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=25.1
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEe
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
.....++||||+|+|... ....+...+..-|....+|+.+
T Consensus 117 ~g~~kViIIDEa~~ls~~-a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQ-SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHH-HHHHHHHHHhcCCCCceEEEEE
Confidence 346689999999997653 2345555555555455555444
No 358
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.78 E-value=1.3 Score=52.87 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=14.9
Q ss_pred EEEEcCCCChHHHHHHHH
Q 003924 63 VVAMARTGSGKTAAFLVP 80 (786)
Q Consensus 63 vvl~a~TGSGKT~afllp 80 (786)
+|+.||.|+|||.+..+.
T Consensus 41 ~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 41 YLFTGPRGVGKTSTARIL 58 (585)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999875543
No 359
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.77 E-value=0.69 Score=53.18 Aligned_cols=59 Identities=24% Similarity=0.278 Sum_probs=36.7
Q ss_pred HHHHHHc-----CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 53 TMPLILS-----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 53 aip~il~-----g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
-+..++. |.-+++.|++|+|||...+..+... .. .+.++||++-. +-..|+......++
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~-a~----~g~~vlYvs~E-es~~qi~~ra~rlg 131 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARL-AA----AGGKVLYVSGE-ESASQIKLRAERLG 131 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHH-Hh----cCCeEEEEEcc-ccHHHHHHHHHHcC
Confidence 3445554 3458899999999997655433332 22 25678888753 44566666555554
No 360
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.72 E-value=1.5 Score=50.73 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.0
Q ss_pred EEEEcCCCChHHHHHHHH
Q 003924 63 VVAMARTGSGKTAAFLVP 80 (786)
Q Consensus 63 vvl~a~TGSGKT~afllp 80 (786)
+++.||+|+|||..+.+.
T Consensus 39 ~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 39 YIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 699999999999876543
No 361
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.67 E-value=0.81 Score=54.46 Aligned_cols=43 Identities=23% Similarity=0.294 Sum_probs=24.7
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcH
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~ 211 (786)
..+.++||||+|+|....|. .|...+..-|....+|| .+|-+.
T Consensus 123 g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fIL-~Ttd~~ 165 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFVL-ATTDPQ 165 (618)
T ss_pred CCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEEE-EECCch
Confidence 45789999999998754433 23344444343444444 445433
No 362
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.55 E-value=0.78 Score=49.84 Aligned_cols=67 Identities=24% Similarity=0.372 Sum_probs=43.6
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHH-cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHH
Q 003924 35 FRAIKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (786)
Q Consensus 35 l~~l~~~g~~~ptpiQ~~aip~il-~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa 106 (786)
+..|...|. +++.|...+..++ .+..++++|+||||||.. +-.++..+... ....+++++-.+.||.
T Consensus 108 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~--~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKN--DPTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhcc--CCCceEEEECCchhhc
Confidence 444555564 4556666665544 457899999999999974 33444444321 1245788888988874
No 363
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=91.50 E-value=0.41 Score=54.08 Aligned_cols=54 Identities=13% Similarity=0.110 Sum_probs=31.2
Q ss_pred CCCCccCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHH
Q 003924 21 KSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~---g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~af 77 (786)
..-+|+++|--....+.|... .+..|.-++...+ -..+.+++.||+|+|||+..
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl---~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGI---DPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCC---CCCceEEEECCCCCCHHHHH
Confidence 345677776655555555432 2222222222111 13477999999999999854
No 364
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=91.48 E-value=0.5 Score=54.90 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHH
Q 003924 60 GADVVAMARTGSGKTAA 76 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~a 76 (786)
.+.+++.||+|+|||+.
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 36799999999999985
No 365
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.44 E-value=1.9 Score=47.33 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=30.4
Q ss_pred CceeeEEeCCccccc-cCChHHHHHHHHhhc------ccCCceEEEeccCcHHHHHHHHhc
Q 003924 167 KSVEYVVFDEADCLF-GMGFAEQLHKILGQL------SENRQTLLFSATLPSALAEFAKAG 220 (786)
Q Consensus 167 ~~l~~vV~DEah~l~-~~gf~~~l~~Il~~l------~~~~q~ll~SATl~~~l~~~~~~~ 220 (786)
.++++||+|=+-++. +......+..+...+ .+..-++.++||.......-+..+
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 467788888887754 222334555554432 233356888999755433334433
No 366
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.43 E-value=1.2 Score=52.74 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=15.8
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPM 81 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpi 81 (786)
-.+++||.|+|||.++-+.+
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37889999999998765443
No 367
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.41 E-value=0.83 Score=51.39 Aligned_cols=47 Identities=26% Similarity=0.398 Sum_probs=33.3
Q ss_pred ceeeEEeCCccccccC-ChHHHHHHHHhhccc-CCceEEEeccCcHHHH
Q 003924 168 SVEYVVFDEADCLFGM-GFAEQLHKILGQLSE-NRQTLLFSATLPSALA 214 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~-gf~~~l~~Il~~l~~-~~q~ll~SATl~~~l~ 214 (786)
++++++||.++.+... .....+-.++..+.. +.|+|+.|-.+|..+.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 7889999999988764 345566666666654 4477777777777654
No 368
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=91.39 E-value=1.1 Score=49.63 Aligned_cols=40 Identities=18% Similarity=0.090 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHc--CC---cEEEEcCCCChHHHHHHHHHHHHHhh
Q 003924 47 TPIQRKTMPLILS--GA---DVVAMARTGSGKTAAFLVPMLQRLNQ 87 (786)
Q Consensus 47 tpiQ~~aip~il~--g~---dvvl~a~TGSGKT~afllpile~L~~ 87 (786)
+|+|...+..+.. ++ -.++.||.|.|||..+...+ ..|..
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A-~~LlC 47 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA-QGLLC 47 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH-HHHcC
Confidence 5778877777664 32 47899999999997654333 34443
No 369
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.34 E-value=1.8 Score=44.96 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=32.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
|.-+++.|++|+|||......+.+.+. .+.+++|+.-... ..++.+.+..++
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~-----~g~~~~y~~~e~~-~~~~~~~~~~~g 76 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALK-----QGKKVYVITTENT-SKSYLKQMESVK 76 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHh-----CCCEEEEEEcCCC-HHHHHHHHHHCC
Confidence 356889999999999766554444443 2567777775432 344555555554
No 370
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.23 E-value=1.4 Score=46.84 Aligned_cols=37 Identities=11% Similarity=0.075 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P 101 (786)
|.-+++.|++|+|||...+-.+.+.+. .|.+++|++-
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~-----~Ge~vlyis~ 72 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQAS-----RGNPVLFVTV 72 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh-----CCCcEEEEEe
Confidence 456899999999999866654444432 3567888883
No 371
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=91.23 E-value=1.3 Score=50.77 Aligned_cols=113 Identities=17% Similarity=0.105 Sum_probs=54.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHH-
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF- 137 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~- 137 (786)
.|.-+++.|+||+|||...+--+...... .+..+++++..-. ..|+...+-... .++....+..|.-...++
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~----~g~~vl~~SlEm~-~~~i~~R~~~~~--~~v~~~~~~~g~l~~~~~~ 266 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIK----EGKPVAFFSLEMS-AEQLAMRMLSSE--SRVDSQKLRTGKLSDEDWE 266 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHh----CCCeEEEEeCcCC-HHHHHHHHHHHh--cCCCHHHhccCCCCHHHHH
Confidence 34558999999999997554333333322 2556788874321 223333222222 222222222232222222
Q ss_pred ------HHHcCCCCEEE-EC----cHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 138 ------EELAQNPDIII-AT----PGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 138 ------~~l~~~~dIiV-~T----pgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
..+.. ..+.| .+ +..+...+... ..-..+++||||=.+.+.
T Consensus 267 ~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~--~~~~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 267 KLTSAAGKLSE-APLYIDDTPGLTITELRAKARRL--KREHGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHH--HHhcCCCEEEEcchHhcC
Confidence 22333 33444 33 33444433321 111247899999988774
No 372
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.21 E-value=1.2 Score=49.95 Aligned_cols=59 Identities=22% Similarity=0.293 Sum_probs=35.6
Q ss_pred HHHHHHc-----CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 53 TMPLILS-----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 53 aip~il~-----g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
-+..++. |.-+++.|++|+|||...+..+.. +.. .+.+++|++-. +-..|+......++
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~-~a~----~g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR-LAK----RGGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHH-HHh----cCCeEEEEECC-cCHHHHHHHHHHcC
Confidence 3445554 355889999999999765533332 222 24578888754 33456655555543
No 373
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.14 E-value=0.7 Score=51.64 Aligned_cols=43 Identities=26% Similarity=0.179 Sum_probs=26.7
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccC
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl 209 (786)
.....+|||||+|.|... ....+..++..-|....+|++|..+
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEECCc
Confidence 356779999999987642 3444555555544455555555443
No 374
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.08 E-value=0.58 Score=55.49 Aligned_cols=20 Identities=20% Similarity=0.145 Sum_probs=16.2
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPM 81 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpi 81 (786)
.+|+.||.|+|||.++.+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 47889999999998766444
No 375
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.06 E-value=0.98 Score=52.62 Aligned_cols=20 Identities=20% Similarity=0.199 Sum_probs=16.4
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPM 81 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpi 81 (786)
.+++.||.|+|||.++.+.+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999998765443
No 376
>PRK04328 hypothetical protein; Provisional
Probab=90.99 E-value=1.4 Score=46.48 Aligned_cols=52 Identities=15% Similarity=0.213 Sum_probs=34.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
|.-+++.|++|+|||...+-.+.+.+.. |..++|++ +.+-..++.+.+..|+
T Consensus 23 gs~ili~G~pGsGKT~l~~~fl~~~~~~-----ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 23 RNVVLLSGGPGTGKSIFSQQFLWNGLQM-----GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhc-----CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 4568899999999997666555555433 55677776 3344455566666665
No 377
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=90.96 E-value=0.77 Score=54.14 Aligned_cols=164 Identities=22% Similarity=0.262 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEcch----hhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc-
Q 003924 251 KHAALLYMIREHISSDQQTLIFVSTK----HHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV- 325 (786)
Q Consensus 251 k~~~Ll~lL~~~~~~~~k~IVF~~t~----~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv- 325 (786)
-.-+++..+.. +..+.++.+.++|. .|.+.+..+|...|+.+..+.|++...+|..++....+|+++|+|.|-+
T Consensus 297 TvVA~laml~a-i~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHAL 375 (677)
T COG1200 297 TVVALLAMLAA-IEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHAL 375 (677)
T ss_pred HHHHHHHHHHH-HHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchh
Confidence 34444555543 46789999999995 5666777888888999999999999999999999999999999999976
Q ss_pred cccccCCCCcceeEecCCCCCHhHHHHHhhcccc----C-CCccEEEEEEecccHHHHHHHHHHhcCCC---CCC-----
Q 003924 326 AARGIDIPLLDNVINWDFPPKPKIFVHRVGRAAR----A-GRTGTAFSFVTSEDMAYLLDLHLFLSKPI---RAA----- 392 (786)
Q Consensus 326 ~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR----~-G~~G~ai~lv~~~e~~~l~~l~~~l~~~~---~~~----- 392 (786)
+...+++.++-+||.- =.||.|=.-| . |....-+++.+-.-+|.-..+..|=...+ ...
T Consensus 376 iQd~V~F~~LgLVIiD--------EQHRFGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRk 447 (677)
T COG1200 376 IQDKVEFHNLGLVIID--------EQHRFGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRK 447 (677)
T ss_pred hhcceeecceeEEEEe--------ccccccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCC
Confidence 5678999999988842 2466663322 1 22122344555555555444443322111 111
Q ss_pred CCHHHHH--hhhhhHHHHHHHHHhcCCcccccc
Q 003924 393 PSEEEVL--LDMDGVMSKIDQAIANGETIYGRF 423 (786)
Q Consensus 393 p~~e~~~--~~~~~~~~~i~~~~~~~~~~~g~~ 423 (786)
|....+. ...+.+.+.|...+.++..+|=-+
T Consensus 448 pI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~Vc 480 (677)
T COG1200 448 PITTVVIPHERRPEVYERIREEIAKGRQAYVVC 480 (677)
T ss_pred ceEEEEeccccHHHHHHHHHHHHHcCCEEEEEe
Confidence 1111111 245566677777777776666433
No 378
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.93 E-value=2 Score=52.60 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=25.2
Q ss_pred eeEEeCCccccccCCh----HHHHHHHHhhcccCCceEEEeccCcHH
Q 003924 170 EYVVFDEADCLFGMGF----AEQLHKILGQLSENRQTLLFSATLPSA 212 (786)
Q Consensus 170 ~~vV~DEah~l~~~gf----~~~l~~Il~~l~~~~q~ll~SATl~~~ 212 (786)
.+|+|||+|.+...|. ......++...-....+.++.||-+.+
T Consensus 276 ~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e 322 (731)
T TIGR02639 276 AILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEE 322 (731)
T ss_pred eEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHH
Confidence 4799999999985431 122333433322345577777776544
No 379
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=90.92 E-value=1.6 Score=47.92 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHcC--C---cEEEEcCCCChHHHHHHH
Q 003924 47 TPIQRKTMPLILSG--A---DVVAMARTGSGKTAAFLV 79 (786)
Q Consensus 47 tpiQ~~aip~il~g--~---dvvl~a~TGSGKT~afll 79 (786)
+|+|..++..+... + -.++.||.|+|||..+..
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~ 40 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF 40 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH
Confidence 57888888877743 2 388999999999976553
No 380
>PRK08840 replicative DNA helicase; Provisional
Probab=90.79 E-value=2.2 Score=49.31 Aligned_cols=132 Identities=12% Similarity=0.083 Sum_probs=62.4
Q ss_pred CCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCC
Q 003924 42 GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD 121 (786)
Q Consensus 42 g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~ 121 (786)
|+.+..+.--..+.-+..|.-+|+.|+||.|||...+-.+...... .+..++|++.... ..|+...+-. ...+
T Consensus 199 gi~TG~~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~~----~~~~v~~fSlEMs-~~ql~~Rlla--~~s~ 271 (464)
T PRK08840 199 GVDTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAMD----QDKPVLIFSLEMP-AEQLMMRMLA--SLSR 271 (464)
T ss_pred CcCCCcHHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHHh----CCCeEEEEeccCC-HHHHHHHHHH--hhCC
Confidence 4444444444444334445668899999999997654333322222 2556888875432 3343332221 1122
Q ss_pred CeEEEEEcCCChhHHHH-------HHcCCCCEEEE-Cc----HHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 122 LRISLLVGGDSMESQFE-------ELAQNPDIIIA-TP----GRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 122 l~v~~l~gg~~~~~~~~-------~l~~~~dIiV~-Tp----grll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
+....+..|.-.++.+. .+.....+.|- +| ..+...+.... .....+++||||=.|.+.
T Consensus 272 v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~-~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 272 VDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIA-REHGGLSMIMVDYLQLMR 342 (464)
T ss_pred CCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEccHHhcC
Confidence 22222222322222222 22233445443 33 33333332210 111247899999988775
No 381
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.67 E-value=1.7 Score=49.14 Aligned_cols=44 Identities=25% Similarity=0.267 Sum_probs=26.3
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcHH
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSA 212 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~ 212 (786)
....++||||+|+|.... ...+..++..-|... ++++++|-+..
T Consensus 116 ~~~kViiIDead~m~~~a-anaLLk~LEep~~~~-~fIL~a~~~~~ 159 (394)
T PRK07940 116 GRWRIVVIEDADRLTERA-ANALLKAVEEPPPRT-VWLLCAPSPED 159 (394)
T ss_pred CCcEEEEEechhhcCHHH-HHHHHHHhhcCCCCC-eEEEEECChHH
Confidence 467799999999986532 344555555444344 44555554443
No 382
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=90.66 E-value=0.24 Score=51.16 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=12.8
Q ss_pred EEEEcCCCChHHHHH
Q 003924 63 VVAMARTGSGKTAAF 77 (786)
Q Consensus 63 vvl~a~TGSGKT~af 77 (786)
+++.|+.|||||...
T Consensus 1 ~vv~G~pGsGKSt~i 15 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLI 15 (234)
T ss_pred CEEEcCCCCCHHHHH
Confidence 478999999999853
No 383
>PRK05748 replicative DNA helicase; Provisional
Probab=90.48 E-value=1.6 Score=50.15 Aligned_cols=113 Identities=17% Similarity=0.168 Sum_probs=55.1
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHH-HHHccCCCCeEEEEEcCCChhHHH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT-KELGRYTDLRISLLVGGDSMESQF 137 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l-~~l~~~~~l~v~~l~gg~~~~~~~ 137 (786)
.|.-+++.|+||.|||...+-.+...... .+..++|++..-. ..|+...+ ..++ ++....+..|.-....+
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~----~g~~v~~fSlEms-~~~l~~R~l~~~~---~v~~~~i~~~~l~~~e~ 273 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATK----TDKNVAIFSLEMG-AESLVMRMLCAEG---NIDAQRLRTGQLTDDDW 273 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHh----CCCeEEEEeCCCC-HHHHHHHHHHHhc---CCCHHHhhcCCCCHHHH
Confidence 34568999999999997555333332222 2556777764322 23333332 2222 22222222232222222
Q ss_pred H-------HHcCCCCEEEE-Cc----HHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 138 E-------ELAQNPDIIIA-TP----GRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 138 ~-------~l~~~~dIiV~-Tp----grll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
. .+.. ..+.|. +| ..+...+..... ....+++||||=.+.+.
T Consensus 274 ~~~~~a~~~l~~-~~~~i~d~~~~ti~~i~~~~r~~~~-~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 274 PKLTIAMGSLSD-APIYIDDTPGIKVTEIRARCRRLAQ-EHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCCEEEEccchhcC
Confidence 2 2223 344443 33 444443332110 01257899999999874
No 384
>PRK07004 replicative DNA helicase; Provisional
Probab=90.44 E-value=1.1 Score=51.74 Aligned_cols=111 Identities=17% Similarity=0.244 Sum_probs=54.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc---CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS---PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~---PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~ 135 (786)
.|.-+|+.|+||+|||...+-.+...... .+..++|++ |..+|+..+. ... .++....+..|.-.++
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~----~~~~v~~fSlEM~~~ql~~R~l---a~~---~~v~~~~i~~g~l~~~ 281 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVE----YGLPVAVFSMEMPGTQLAMRML---GSV---GRLDQHRMRTGRLTDE 281 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHH----cCCeEEEEeCCCCHHHHHHHHH---Hhh---cCCCHHHHhcCCCCHH
Confidence 34568999999999997554333322222 255677776 3344443332 122 1222222222222223
Q ss_pred HH-------HHHcCCCCEEEE-C----cHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 136 QF-------EELAQNPDIIIA-T----PGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 136 ~~-------~~l~~~~dIiV~-T----pgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
.+ ..+. +..+.|. + +..+...+.... .....+++||||=.+.+.
T Consensus 282 e~~~~~~a~~~l~-~~~l~I~d~~~~~~~~i~~~~r~l~-~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 282 DWPKLTHAVQKMS-EAQLFIDETGGLNPMELRSRARRLA-RQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEChhhhcc
Confidence 33 2232 3445553 3 334433333211 112347899999998875
No 385
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=90.37 E-value=1.7 Score=47.36 Aligned_cols=128 Identities=21% Similarity=0.311 Sum_probs=69.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHHccCCCCeEEEE-EcCCChhHHHHH
Q 003924 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLL-VGGDSMESQFEE 139 (786)
Q Consensus 63 vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~--PtreLa~Q~~~~l~~l~~~~~l~v~~l-~gg~~~~~~~~~ 139 (786)
+++.|..|+|||.+.. -+...+.. .|.++++.+ ..|+=|.. .++.+++..++.++.- .|+++..--|..
T Consensus 142 il~vGVNG~GKTTTIa-KLA~~l~~----~g~~VllaA~DTFRAaAiE---QL~~w~er~gv~vI~~~~G~DpAaVafDA 213 (340)
T COG0552 142 ILFVGVNGVGKTTTIA-KLAKYLKQ----QGKSVLLAAGDTFRAAAIE---QLEVWGERLGVPVISGKEGADPAAVAFDA 213 (340)
T ss_pred EEEEecCCCchHhHHH-HHHHHHHH----CCCeEEEEecchHHHHHHH---HHHHHHHHhCCeEEccCCCCCcHHHHHHH
Confidence 6789999999998743 23333333 466776665 34554443 2333444445665542 344443333322
Q ss_pred HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc-CChHHHHHHHHhhcccCC-----ceEEE-eccCcHH
Q 003924 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENR-----QTLLF-SATLPSA 212 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~-~gf~~~l~~Il~~l~~~~-----q~ll~-SATl~~~ 212 (786)
+ . .-...++++|++|=|=||-. .+....|..|.+-+.+.. .+++. =||...+
T Consensus 214 i------------------~---~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqn 272 (340)
T COG0552 214 I------------------Q---AAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQN 272 (340)
T ss_pred H------------------H---HHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChh
Confidence 2 1 12234566777777777653 345566666666554433 24444 7887665
Q ss_pred HHHHHHh
Q 003924 213 LAEFAKA 219 (786)
Q Consensus 213 l~~~~~~ 219 (786)
-..-++.
T Consensus 273 al~QAk~ 279 (340)
T COG0552 273 ALSQAKI 279 (340)
T ss_pred HHHHHHH
Confidence 5544443
No 386
>PRK10689 transcription-repair coupling factor; Provisional
Probab=90.36 E-value=0.92 Score=57.95 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=64.1
Q ss_pred ccCCCcEEEEEcchhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEec-ccccccCCCCcce
Q 003924 263 ISSDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-VAARGIDIPLLDN 337 (786)
Q Consensus 263 ~~~~~k~IVF~~t~~~ae~l~~~L~~~----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTd-v~arGlDIp~v~~ 337 (786)
+..+.+++|.|+|...|..++..+... ++.+..++|..+..++..++....+|.++|||+|. .+...+.+..+.+
T Consensus 646 ~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~l 725 (1147)
T PRK10689 646 VENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGL 725 (1147)
T ss_pred HHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCE
Confidence 346789999999999999888877653 45677899999999999999999999999999996 4555567778888
Q ss_pred eEe
Q 003924 338 VIN 340 (786)
Q Consensus 338 VI~ 340 (786)
||.
T Consensus 726 LVI 728 (1147)
T PRK10689 726 LIV 728 (1147)
T ss_pred EEE
Confidence 773
No 387
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.35 E-value=0.59 Score=56.22 Aligned_cols=43 Identities=23% Similarity=0.301 Sum_probs=39.0
Q ss_pred eeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcH
Q 003924 169 VEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (786)
Q Consensus 169 l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~ 211 (786)
.-++|||.-|++.+.-....+..++...|++...++.|=+.|+
T Consensus 130 pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 130 PLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred ceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 3599999999999999999999999999999999999987654
No 388
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.25 E-value=1.1 Score=53.36 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=23.4
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEe
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
+....+|||||+|.|.... ...+...+..-|...-+|+.+
T Consensus 125 ~~~~KVvIIdEad~Lt~~a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHHH-HHHHHHHHhCCCCCeEEEEEe
Confidence 4567899999999986432 233444444444343344433
No 389
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=90.23 E-value=3.3 Score=46.26 Aligned_cols=110 Identities=19% Similarity=0.204 Sum_probs=60.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~ 139 (786)
.+.+.+.|+.|.|||. |+-++...... ....| +...+....+...+..+. |+...-.
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp~--~~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~l~---- 118 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLPI--KRKRR----VHFHEFMLDVHSRLHQLR-----------GQDDPLP---- 118 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCCc--ccccc----ccccHHHHHHHHHHHHHh-----------CCCccHH----
Confidence 3569999999999997 33333221110 01111 234466666666666543 1111000
Q ss_pred HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhc-ccCCceEEEeccCcHHH
Q 003924 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSATLPSAL 213 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l-~~~~q~ll~SATl~~~l 213 (786)
.+.+.+ .....+|.|||.|. .+.+-+-.+..++..+ ..+.-+|..|-++|..+
T Consensus 119 -------------~va~~l-------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 119 -------------QVADEL-------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred -------------HHHHHH-------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 111111 23456899999995 3334344555555544 34667788888888763
No 390
>PRK08006 replicative DNA helicase; Provisional
Probab=90.21 E-value=2.6 Score=48.74 Aligned_cols=115 Identities=14% Similarity=0.077 Sum_probs=55.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEE-cCCChhHHH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLV-GGDSMESQF 137 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~-gg~~~~~~~ 137 (786)
.|.-+|+.|+||.|||...+-.+...... .+..++|++..-. ..|+...+-. ...++....+. |..+.+++.
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~----~g~~V~~fSlEM~-~~ql~~Rlla--~~~~v~~~~i~~~~l~~~e~~ 295 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAML----QDKPVLIFSLEMP-GEQIMMRMLA--SLSRVDQTRIRTGQLDDEDWA 295 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh----cCCeEEEEeccCC-HHHHHHHHHH--HhcCCCHHHhhcCCCCHHHHH
Confidence 34558899999999997555433333222 2556888875422 2333332221 11223222222 222333321
Q ss_pred H------HHcCCCCEEEE-----CcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 138 E------ELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 138 ~------~l~~~~dIiV~-----Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
. .+.....+.|- |+..+...+.... .....+++||||=.|.+-
T Consensus 296 ~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~-~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 296 RISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIF-REHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH-HhcCCCCEEEEccHHHcc
Confidence 1 22133445543 3334433333210 111257899999998764
No 391
>PRK10865 protein disaggregation chaperone; Provisional
Probab=90.13 E-value=1.1 Score=55.76 Aligned_cols=44 Identities=18% Similarity=0.149 Sum_probs=25.6
Q ss_pred eeEEeCCccccccCCh---HHHHHHHHhhcccCCceEEEeccCcHHH
Q 003924 170 EYVVFDEADCLFGMGF---AEQLHKILGQLSENRQTLLFSATLPSAL 213 (786)
Q Consensus 170 ~~vV~DEah~l~~~gf---~~~l~~Il~~l~~~~q~ll~SATl~~~l 213 (786)
.+|+|||+|.+...|- ......++...-..-.+.+..||-+++.
T Consensus 273 ~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~ 319 (857)
T PRK10865 273 VILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEY 319 (857)
T ss_pred eEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHH
Confidence 4899999999985431 1223344433323445666666665554
No 392
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=90.13 E-value=0.59 Score=55.19 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=15.9
Q ss_pred cEEEEcCCCChHHHHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPM 81 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpi 81 (786)
.+++.||.|+|||..+.+.+
T Consensus 40 A~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 40 AYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999998765433
No 393
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.01 E-value=0.24 Score=48.21 Aligned_cols=116 Identities=19% Similarity=0.307 Sum_probs=66.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCe-EEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGV-RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~-r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l 140 (786)
.+++.|++|+|||.. +.-+.+.|... |. -.=|++| ++.+=++..++++.-+..|...--..
T Consensus 7 ki~ITG~PGvGKtTl-~~ki~e~L~~~----g~kvgGf~t~----------EVR~gGkR~GF~Ivdl~tg~~~~la~--- 68 (179)
T COG1618 7 KIFITGRPGVGKTTL-VLKIAEKLREK----GYKVGGFITP----------EVREGGKRIGFKIVDLATGEEGILAR--- 68 (179)
T ss_pred EEEEeCCCCccHHHH-HHHHHHHHHhc----CceeeeEEee----------eeecCCeEeeeEEEEccCCceEEEEE---
Confidence 588999999999975 55666676653 22 2346666 34455667788888777554321100
Q ss_pred cCCCCEEEECcHHHHHHHhhcc--CC--CCCceeeEEeCCcccc--ccCChHHHHHHHHhh
Q 003924 141 AQNPDIIIATPGRLMHHLSEVE--DM--SLKSVEYVVFDEADCL--FGMGFAEQLHKILGQ 195 (786)
Q Consensus 141 ~~~~dIiV~Tpgrll~~l~~~~--~l--~l~~l~~vV~DEah~l--~~~gf~~~l~~Il~~ 195 (786)
.+....-|+-++-..+.+.+.. .+ -+..-++||+||+--| ....|...+.+++..
T Consensus 69 ~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 69 VGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred cCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 0112233444443333333211 11 1334689999999754 344577777777654
No 394
>PHA00729 NTP-binding motif containing protein
Probab=90.01 E-value=2.8 Score=43.51 Aligned_cols=75 Identities=12% Similarity=0.224 Sum_probs=36.7
Q ss_pred CCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccC-ChH----HHHHHHHhhcccCCceEEEeccCcHHHHHHHH
Q 003924 144 PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM-GFA----EQLHKILGQLSENRQTLLFSATLPSALAEFAK 218 (786)
Q Consensus 144 ~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~-gf~----~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~ 218 (786)
...++.+...++..+... .-....++++||||+=.-+.. .+. .....+...+..-+.++.+...-|..+...++
T Consensus 59 ~~~~fid~~~Ll~~L~~a-~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr 137 (226)
T PHA00729 59 QNSYFFELPDALEKIQDA-IDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLR 137 (226)
T ss_pred CcEEEEEHHHHHHHHHHH-HhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHH
Confidence 345555555565555431 111234578999994321111 111 11112333333345667777766777766665
Q ss_pred h
Q 003924 219 A 219 (786)
Q Consensus 219 ~ 219 (786)
.
T Consensus 138 ~ 138 (226)
T PHA00729 138 E 138 (226)
T ss_pred h
Confidence 5
No 395
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.98 E-value=1.7 Score=50.81 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=14.5
Q ss_pred EEEEcCCCChHHHHHHH
Q 003924 63 VVAMARTGSGKTAAFLV 79 (786)
Q Consensus 63 vvl~a~TGSGKT~afll 79 (786)
+++.||+|+|||.+..+
T Consensus 39 ~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 59999999999987653
No 396
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.96 E-value=0.44 Score=58.36 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
+.+++.||+|+|||+..-
T Consensus 488 ~giLL~GppGtGKT~lak 505 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAK 505 (733)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999998543
No 397
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=89.96 E-value=2.8 Score=52.34 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=26.9
Q ss_pred eeeEEeCCccccccCChH---HHHHHHHhhcccCCceEEEeccCcHHHH
Q 003924 169 VEYVVFDEADCLFGMGFA---EQLHKILGQLSENRQTLLFSATLPSALA 214 (786)
Q Consensus 169 l~~vV~DEah~l~~~gf~---~~l~~Il~~l~~~~q~ll~SATl~~~l~ 214 (786)
-.+|+|||+|.+...|.. .....++...-....+.++-||-+++..
T Consensus 267 ~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r 315 (852)
T TIGR03346 267 QIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYR 315 (852)
T ss_pred CeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHH
Confidence 458999999999854321 2233444433334456666677555543
No 398
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.92 E-value=2.7 Score=44.93 Aligned_cols=125 Identities=19% Similarity=0.292 Sum_probs=67.9
Q ss_pred HHHHHcCC-----cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEE
Q 003924 54 MPLILSGA-----DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLV 128 (786)
Q Consensus 54 ip~il~g~-----dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~ 128 (786)
+|.+..|+ .+++.||+|+||++.+ -++..- .+ ..++-+.+..|+.-|.-+-..+.
T Consensus 155 FPqlFtGkR~PwrgiLLyGPPGTGKSYLA--KAVATE------An-STFFSvSSSDLvSKWmGESEkLV----------- 214 (439)
T KOG0739|consen 155 FPQLFTGKRKPWRGILLYGPPGTGKSYLA--KAVATE------AN-STFFSVSSSDLVSKWMGESEKLV----------- 214 (439)
T ss_pred chhhhcCCCCcceeEEEeCCCCCcHHHHH--HHHHhh------cC-CceEEeehHHHHHHHhccHHHHH-----------
Confidence 36777774 4999999999999632 222221 12 46777777777666543322221
Q ss_pred cCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCC---hHHHHHH----HHhhcc----
Q 003924 129 GGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMG---FAEQLHK----ILGQLS---- 197 (786)
Q Consensus 129 gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~g---f~~~l~~----Il~~l~---- 197 (786)
. .|+.+..+ +...+|.|||+|.+...+ -.+.-.. +|-.+.
T Consensus 215 ---------k--------------nLFemARe------~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~ 265 (439)
T KOG0739|consen 215 ---------K--------------NLFEMARE------NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGN 265 (439)
T ss_pred ---------H--------------HHHHHHHh------cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcccc
Confidence 0 12233332 245689999999776432 1222222 222222
Q ss_pred cCCceEEEeccC-cHHHHHHHHhcCCCCcce
Q 003924 198 ENRQTLLFSATL-PSALAEFAKAGLRDPHLV 227 (786)
Q Consensus 198 ~~~q~ll~SATl-~~~l~~~~~~~l~~p~~i 227 (786)
.+--++.+.||- |=.+..-++.-+..-++|
T Consensus 266 d~~gvLVLgATNiPw~LDsAIRRRFekRIYI 296 (439)
T KOG0739|consen 266 DNDGVLVLGATNIPWVLDSAIRRRFEKRIYI 296 (439)
T ss_pred CCCceEEEecCCCchhHHHHHHHHhhcceec
Confidence 345688888985 434444555444433333
No 399
>PRK04841 transcriptional regulator MalT; Provisional
Probab=89.90 E-value=1.6 Score=54.61 Aligned_cols=44 Identities=23% Similarity=0.326 Sum_probs=36.1
Q ss_pred ceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcH
Q 003924 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~ 211 (786)
.--+||||++|.+.+......+..++...|.+..+|+.|-+.|+
T Consensus 121 ~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 121 QPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred CCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 33489999999987776777888999999989999888877543
No 400
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=89.88 E-value=2.9 Score=46.25 Aligned_cols=139 Identities=20% Similarity=0.260 Sum_probs=73.3
Q ss_pred CChHHHHHHHHHHHcCCc------EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC-----cHHHHHHHHHHH
Q 003924 45 VPTPIQRKTMPLILSGAD------VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP-----TRDLALQTLKFT 113 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~d------vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P-----treLa~Q~~~~l 113 (786)
..+..|...+-.++...+ +++.|.+|||||..-. .++..+ ....+++++ .+-|-.++....
T Consensus 9 ~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r-~~l~~~-------n~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 9 PCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVR-QLLRKL-------NLENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHH-HHHhhc-------CCcceeeehHHhccHHHHHHHHHHHh
Confidence 357789999888887765 4899999999998632 222222 223555554 333333333322
Q ss_pred HHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCC-CCCceeeEEeCCccccccCC--hHHHHH
Q 003924 114 KELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMG--FAEQLH 190 (786)
Q Consensus 114 ~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l-~l~~l~~vV~DEah~l~~~g--f~~~l~ 190 (786)
. .+ -..|...+..+..+. .+...+..++.. .....-++|+|-||.+-+++ ....+-
T Consensus 81 ~-~~---------d~dg~~~~~~~en~~-----------d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~ 139 (438)
T KOG2543|consen 81 Q-LA---------DKDGDKVEGDAENFS-----------DFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLF 139 (438)
T ss_pred c-cC---------CCchhhhhhHHHHHH-----------HHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHH
Confidence 1 00 011111111111111 122223321111 12345589999999999887 233333
Q ss_pred HHHhhcccCCceEEEeccCcHH
Q 003924 191 KILGQLSENRQTLLFSATLPSA 212 (786)
Q Consensus 191 ~Il~~l~~~~q~ll~SATl~~~ 212 (786)
.+-..++...-.|.+|+++++.
T Consensus 140 ~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 140 RLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHHHHhCCCceEEEEeccccHH
Confidence 3334444455568899998765
No 401
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=89.71 E-value=1.4 Score=51.65 Aligned_cols=67 Identities=19% Similarity=0.338 Sum_probs=50.2
Q ss_pred EEEEEcchhhHHHHHHHHHHc-----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc-----cccc-cCCCCcce
Q 003924 269 TLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AARG-IDIPLLDN 337 (786)
Q Consensus 269 ~IVF~~t~~~ae~l~~~L~~~-----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv-----~arG-lDIp~v~~ 337 (786)
+||+++|++.|..+++.+... ++.+..++|+++...+...+ +.| .+|||+|+- +.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l---~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL---KRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHH---hcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 899999999999998877653 46688999999887766444 446 999999963 4444 55555555
Q ss_pred eE
Q 003924 338 VI 339 (786)
Q Consensus 338 VI 339 (786)
+|
T Consensus 178 lV 179 (513)
T COG0513 178 LV 179 (513)
T ss_pred EE
Confidence 55
No 402
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.64 E-value=1.6 Score=52.20 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.5
Q ss_pred cEEEEcCCCChHHHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVP 80 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllp 80 (786)
.+++.||.|+|||.++...
T Consensus 40 a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 40 AYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred eEEEECCCCCChHHHHHHH
Confidence 4799999999999875543
No 403
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.63 E-value=3.6 Score=44.55 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=24.9
Q ss_pred ceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEe
Q 003924 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
...+|||||+|.+... ....+..++...+....+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999988542 2345666666656566555544
No 404
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.60 E-value=1.1 Score=52.16 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=30.1
Q ss_pred CCceeeEEeCCcccccc-------CChHHHHHHHHhhc---ccCCceEEEeccCcHH
Q 003924 166 LKSVEYVVFDEADCLFG-------MGFAEQLHKILGQL---SENRQTLLFSATLPSA 212 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~-------~gf~~~l~~Il~~l---~~~~q~ll~SATl~~~ 212 (786)
-+..++|.|||.|-|.. ..-...++.+|..+ ...+.+.++-||--+.
T Consensus 602 ~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD 658 (802)
T KOG0733|consen 602 ASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD 658 (802)
T ss_pred cCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc
Confidence 45667899999998763 12234445555544 3456788889995443
No 405
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=89.48 E-value=0.7 Score=52.15 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 003924 61 ADVVAMARTGSGKTAAF 77 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~af 77 (786)
+.+++.||+|+|||+.+
T Consensus 166 ~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CceEEECCCCCChHHHH
Confidence 56999999999999753
No 406
>PF14516 AAA_35: AAA-like domain
Probab=89.44 E-value=3.3 Score=45.70 Aligned_cols=128 Identities=23% Similarity=0.326 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHc-CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHH------HHHHHHH-HHHHHccC
Q 003924 48 PIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD------LALQTLK-FTKELGRY 119 (786)
Q Consensus 48 piQ~~aip~il~-g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptre------La~Q~~~-~l~~l~~~ 119 (786)
|+.+.++..|.. |.-+.+.||-.+|||.. +.-+.+.+.. .+.++++|.=... =..+... .+..++..
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKTSl-l~~l~~~l~~----~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~ 92 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKTSL-LLRLLERLQQ----QGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQ 92 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHHHH-HHHHHHHHHH----CCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHH
Confidence 499999999998 89999999999999975 4445555544 3666666642210 0112222 23344444
Q ss_pred CCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCC-CCCceeeEEeCCccccccCC-hHHHHHHHHhh
Q 003924 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMG-FAEQLHKILGQ 195 (786)
Q Consensus 120 ~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l-~l~~l~~vV~DEah~l~~~g-f~~~l~~Il~~ 195 (786)
.++.. ...+.+.. .++.+.++...+.+. -+ ....-=+++|||+|.+++.. +...+..+++.
T Consensus 93 L~l~~-------~l~~~w~~-------~~~~~~~~~~~~~~~-ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~ 155 (331)
T PF14516_consen 93 LKLDE-------KLDEYWDE-------EIGSKISCTEYFEEY-LLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRS 155 (331)
T ss_pred cCCCh-------hHHHHHHH-------hcCChhhHHHHHHHH-HHhcCCCCEEEEEechhhhccCcchHHHHHHHHHH
Confidence 44431 22222221 133444544444331 01 11222389999999999743 33334444333
No 407
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=89.42 E-value=0.58 Score=52.13 Aligned_cols=44 Identities=18% Similarity=0.279 Sum_probs=25.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRD 104 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptre 104 (786)
.+.-++++||||||||... ..++..+.... ..+.+++.+-...|
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~~~~-~~~~~Ivt~EdpiE 176 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELAEAP-DSHRKILTYEAPIE 176 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHhhcC-CCCcEEEEeCCCce
Confidence 4566999999999999753 34444443321 12334444444333
No 408
>PRK08506 replicative DNA helicase; Provisional
Probab=89.25 E-value=2.1 Score=49.69 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=55.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~ 138 (786)
.|.-+++.|+||.|||...+-.+... .. .+..++|++..- =..|+...+-.. ..++....+..|.-....+.
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~-~~----~g~~V~~fSlEM-s~~ql~~Rlla~--~s~v~~~~i~~~~l~~~e~~ 262 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKA-LN----QDKGVAFFSLEM-PAEQLMLRMLSA--KTSIPLQNLRTGDLDDDEWE 262 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHH-Hh----cCCcEEEEeCcC-CHHHHHHHHHHH--hcCCCHHHHhcCCCCHHHHH
Confidence 34558899999999997655444433 22 355678887532 233433332221 12222222222222222222
Q ss_pred -------HHcCCCCEEEE-----CcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 139 -------ELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 139 -------~l~~~~dIiV~-----Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
.+.. ..+.|- |+..+...+.... .....+++||||=.+.+.
T Consensus 263 ~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~-~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 263 RLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLK-SQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHH-HhCCCCCEEEEcChhhcc
Confidence 2233 334443 3334443333211 112357899999998775
No 409
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=89.15 E-value=2.8 Score=52.24 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=22.6
Q ss_pred CChHHHHHHHHHHHc------CCcEEEEcCCCChHHHHH
Q 003924 45 VPTPIQRKTMPLILS------GADVVAMARTGSGKTAAF 77 (786)
Q Consensus 45 ~ptpiQ~~aip~il~------g~dvvl~a~TGSGKT~af 77 (786)
.|---|..-|..++. ..++++.|++|+|||...
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHH
Confidence 333336666655542 257999999999999854
No 410
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=89.12 E-value=1.1 Score=53.03 Aligned_cols=44 Identities=30% Similarity=0.415 Sum_probs=28.3
Q ss_pred HHHCCCCCChHHHHHHHHHHHcC--CcEEEEcCCCChHHHHHHHHHHHHH
Q 003924 38 IKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRL 85 (786)
Q Consensus 38 l~~~g~~~ptpiQ~~aip~il~g--~dvvl~a~TGSGKT~afllpile~L 85 (786)
|..+|| .|.|...+..++.. .-++++||||||||.+. ..++..+
T Consensus 295 l~~lg~---~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 295 IDKLGF---EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred HHHcCC---CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 445554 45566666555543 34789999999999763 4455554
No 411
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.10 E-value=2.5 Score=50.61 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=25.5
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEecc
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SAT 208 (786)
+....+|||||+|.|... -...+..++...|.... ++|.+|
T Consensus 119 ~~~~KVvIIdea~~Ls~~-a~naLLK~LEepp~~ti-fIL~tt 159 (614)
T PRK14971 119 IGKYKIYIIDEVHMLSQA-AFNAFLKTLEEPPSYAI-FILATT 159 (614)
T ss_pred cCCcEEEEEECcccCCHH-HHHHHHHHHhCCCCCeE-EEEEeC
Confidence 457789999999998653 23445555555444443 444445
No 412
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.97 E-value=0.26 Score=48.93 Aligned_cols=45 Identities=31% Similarity=0.285 Sum_probs=29.1
Q ss_pred HHHcCCCCEEEECcHHHHHHHhhccCC-CCCceeeEEeCCcccccc
Q 003924 138 EELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFG 182 (786)
Q Consensus 138 ~~l~~~~dIiV~Tpgrll~~l~~~~~l-~l~~l~~vV~DEah~l~~ 182 (786)
+.....+||||+++..|++-....... ....-.+|||||||.+.+
T Consensus 114 r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 114 RELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp HHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred HHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 344567999999999887654431111 123446899999999865
No 413
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=88.95 E-value=0.98 Score=51.15 Aligned_cols=142 Identities=18% Similarity=0.092 Sum_probs=81.3
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 003924 33 NVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (786)
Q Consensus 33 ~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~ 112 (786)
.++..|... +..+-..|.++.=..-.|.. .+.|-.|||||...+.-+.+. |+..+.-+++|-+=|+.|+.++...
T Consensus 151 a~l~~iesk-IanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~l---h~knPd~~I~~Tfftk~L~s~~r~l 225 (660)
T COG3972 151 ALLDTIESK-IANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKAAEL---HSKNPDSRIAFTFFTKILASTMRTL 225 (660)
T ss_pred HHHHHHHHH-HhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHHHHH---hcCCCCceEEEEeehHHHHHHHHHH
Confidence 345555442 33444567766544445555 678889999998655443322 3445677899999999999999887
Q ss_pred HHHHccC-----CC---CeEEEEEcCCChhHHH---HHHcCCCCEEEECc-----HHHHHHHhhccCCCCCceeeEEeCC
Q 003924 113 TKELGRY-----TD---LRISLLVGGDSMESQF---EELAQNPDIIIATP-----GRLMHHLSEVEDMSLKSVEYVVFDE 176 (786)
Q Consensus 113 l~~l~~~-----~~---l~v~~l~gg~~~~~~~---~~l~~~~dIiV~Tp-----grll~~l~~~~~l~l~~l~~vV~DE 176 (786)
+.+|... .+ +.++.-.||.+.+... ...+.-..+-++-- +.+..++.. .-...-+++|.+||
T Consensus 226 v~~F~f~~~e~~pdW~~~l~~h~wgG~t~~g~y~~~~~~~~~~~~~fsg~g~~F~~aC~eli~~--~~~~~~yD~ilIDE 303 (660)
T COG3972 226 VPEFFFMRVEKQPDWGTKLFCHNWGGLTKEGFYGMYRYICHYYEIPFSGFGNGFDAACKELIAD--INNKKAYDYILIDE 303 (660)
T ss_pred HHHHHHHHhhcCCCccceEEEeccCCCCCCcchHHHHHHhcccccccCCCCcchHHHHHHHHHh--hhccccccEEEecc
Confidence 7666421 11 2233334555544332 22233333333321 122233332 12366789999999
Q ss_pred ccccc
Q 003924 177 ADCLF 181 (786)
Q Consensus 177 ah~l~ 181 (786)
++...
T Consensus 304 ~QDFP 308 (660)
T COG3972 304 SQDFP 308 (660)
T ss_pred cccCC
Confidence 99843
No 414
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=88.94 E-value=15 Score=43.54 Aligned_cols=125 Identities=14% Similarity=0.164 Sum_probs=74.8
Q ss_pred chHHHHHHHHHHHHHhcc-CCCcEEEEEcchhhHHHHHHHHHHcCCCc------eeecCCCCHHHHHHHHHHHhc----C
Q 003924 247 RQEEKHAALLYMIREHIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEP------SVCYGDMDQDARKIHVSRFRA----R 315 (786)
Q Consensus 247 ~~~~k~~~Ll~lL~~~~~-~~~k~IVF~~t~~~ae~l~~~L~~~g~~v------~~lhg~l~q~~R~~~l~~F~~----g 315 (786)
....-+..|-..+.+... -.+.+++|+++.+-...+.+.....|+-. .+++-..+. -..+++.|.. |
T Consensus 609 ~s~~~l~~l~~~~~nL~~~VPgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~--~~dvl~~Ya~a~~~g 686 (821)
T KOG1133|consen 609 ESPEMIKDLGSSISNLSNAVPGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT--VEDVLEGYAEAAERG 686 (821)
T ss_pred CChHHHHHHHHHHHHHHhhCCCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc--HHHHHHHHHHHhhcC
Confidence 334444455544444321 23679999999998888888877654321 112222221 2345666653 4
Q ss_pred CcEEEEEe--cccccccCCCC--cceeEecCCCCC--------------------------------HhHHHHHhhcccc
Q 003924 316 KTMFLIVT--DVAARGIDIPL--LDNVINWDFPPK--------------------------------PKIFVHRVGRAAR 359 (786)
Q Consensus 316 ~~~ILVaT--dv~arGlDIp~--v~~VI~~d~P~s--------------------------------~~~~vQRvGR~gR 359 (786)
.-.||++. .-++.|||+.+ ..+||..++|.. ....-|-+||+-|
T Consensus 687 ~GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIR 766 (821)
T KOG1133|consen 687 RGAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIR 766 (821)
T ss_pred CCeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHh
Confidence 44566543 66899999985 667887777721 1224788999999
Q ss_pred CCCccEEEEEEecc
Q 003924 360 AGRTGTAFSFVTSE 373 (786)
Q Consensus 360 ~G~~G~ai~lv~~~ 373 (786)
.-+.=-++.+++..
T Consensus 767 H~~DYA~i~LlD~R 780 (821)
T KOG1133|consen 767 HRKDYASIYLLDKR 780 (821)
T ss_pred hhccceeEEEehhh
Confidence 75555555555543
No 415
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.82 E-value=1.9 Score=49.62 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=21.9
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEE
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll 204 (786)
....+|||||+|.+.... ...+...+..-+....+|+
T Consensus 120 ~~~kvvIIdead~lt~~~-~n~LLk~lEep~~~~~~Il 156 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEA-FNSLLKTLEEPPQHVKFFL 156 (451)
T ss_pred CCCEEEEEecHHhhCHHH-HHHHHHHhhcCCCCceEEE
Confidence 467899999999986432 3344445554443333333
No 416
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=88.81 E-value=2.5 Score=41.97 Aligned_cols=140 Identities=24% Similarity=0.278 Sum_probs=66.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCC-C-hhHHHHHH
Q 003924 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD-S-MESQFEEL 140 (786)
Q Consensus 63 vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~-~-~~~~~~~l 140 (786)
+.+.--.|=|||.|++--++..+.. |.+++|+-=-.- ....-++.-+....++.+...-.+- . ....-.
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~G~-----G~rV~ivQFlKg--~~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~~-- 76 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAAGH-----GMRVLIVQFLKG--GRYSGELKALKKLPNVEIERFGKGFVWRMNEEEE-- 76 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHHCT-----T--EEEEESS----SS--HHHHHHGGGT--EEEE--TT----GGGHHH--
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhC-----CCEEEEEEEecC--CCCcCHHHHHHhCCeEEEEEcCCcccccCCCcHH--
Confidence 4555668999999988777765543 667777642211 0001122222222223332211110 0 000000
Q ss_pred cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCCh--HHHHHHHHhhcccCCceEEEeccCcHHHHHHHH
Q 003924 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAEFAK 218 (786)
Q Consensus 141 ~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf--~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~ 218 (786)
+ .......+....+ .+.-..+++||+||+-..++.|+ .+.+..++..-|...-+|+.--.+|+.+.+.+.
T Consensus 77 ----~--~~~~~~~~~~a~~--~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 77 ----D--RAAAREGLEEAKE--AISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp ----H--HHHHHHHHHHHHH--HTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred ----H--HHHHHHHHHHHHH--HHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 0 0001112222222 23456789999999998888775 467778888778888888888888888887764
Q ss_pred h
Q 003924 219 A 219 (786)
Q Consensus 219 ~ 219 (786)
.
T Consensus 149 l 149 (172)
T PF02572_consen 149 L 149 (172)
T ss_dssp E
T ss_pred e
Confidence 3
No 417
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=88.69 E-value=1.6 Score=53.55 Aligned_cols=52 Identities=19% Similarity=0.196 Sum_probs=29.9
Q ss_pred CCCccCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHH
Q 003924 22 SGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAA 76 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~---g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~a 76 (786)
.-+|++++--...++.|... .+..|.-++... +..++.+++.||+|+|||..
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~g---i~~~~giLL~GppGtGKT~l 228 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLG---IEPPKGVLLYGPPGTGKTLL 228 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcC---CCCCceEEEECCCCCChHHH
Confidence 45788887555555555432 111111111111 12346799999999999975
No 418
>PRK13764 ATPase; Provisional
Probab=88.66 E-value=0.71 Score=54.64 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=27.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreL 105 (786)
.+..++++|+||||||.. +..++..+.. .+..++.+--.+||
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~~----~~riV~TiEDp~El 297 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYAD----MGKIVKTMESPRDL 297 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh----CCCEEEEECCCccc
Confidence 357799999999999974 4455555543 24444466566666
No 419
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.64 E-value=1.1 Score=47.85 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=36.3
Q ss_pred HHHHCCCCCChHHHHHHHHHHHc-C-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHH
Q 003924 37 AIKRKGYKVPTPIQRKTMPLILS-G-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (786)
Q Consensus 37 ~l~~~g~~~ptpiQ~~aip~il~-g-~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreL 105 (786)
.|..+|| .+.|.+.+..++. . .-+++.|+||||||... ..++..+.. .+.+++.|-...|+
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l-~all~~i~~----~~~~iitiEdp~E~ 120 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL-YSALSELNT----PEKNIITVEDPVEY 120 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH-HHHHhhhCC----CCCeEEEECCCcee
Confidence 3445554 4556666655554 3 35899999999999753 334444432 24456666555554
No 420
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.52 E-value=3.3 Score=47.55 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHCCCCCChHHHHHHHHH----HHcC--------CcEEEEcCCCChHHHHHH
Q 003924 27 SLNLSPNVFRAIKRKGYKVPTPIQRKTMPL----ILSG--------ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 27 ~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~----il~g--------~dvvl~a~TGSGKT~afl 78 (786)
++|.+++-+......|...-.|.-.+.+.. +-+- ..|++.||.|||||+.+.
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA 556 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAA 556 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHH
Confidence 467888888888888776555544444422 2111 359999999999997443
No 421
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=88.49 E-value=2.7 Score=43.37 Aligned_cols=52 Identities=29% Similarity=0.402 Sum_probs=34.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
|.-+++.|++|+|||...+-.+.+.+. .+..++|++... -..++.+.+..++
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~-----~g~~~~y~s~e~-~~~~l~~~~~~~~ 67 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLK-----NGEKAMYISLEE-REERILGYAKSKG 67 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEECCC-CHHHHHHHHHHcC
Confidence 456889999999999765544444443 255688877543 3566666666554
No 422
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=88.46 E-value=0.43 Score=56.39 Aligned_cols=64 Identities=20% Similarity=0.411 Sum_probs=54.5
Q ss_pred HHHHhcCCcEEEEEecccccccCCCCcceeE--------ecCCCCCHhHHHHHhhccccCCC-ccEEEEEEec
Q 003924 309 VSRFRARKTMFLIVTDVAARGIDIPLLDNVI--------NWDFPPKPKIFVHRVGRAARAGR-TGTAFSFVTS 372 (786)
Q Consensus 309 l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI--------~~d~P~s~~~~vQRvGR~gR~G~-~G~ai~lv~~ 372 (786)
-++|..|+-.|-|-+.+++-||.+..-..|+ -+.+|||.+.-+|..||++|..+ .+.-|+|+..
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIs 922 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLIS 922 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEeh
Confidence 4689999999999999999999998766555 47899999999999999999876 5666777765
No 423
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=88.40 E-value=0.8 Score=49.05 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=23.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhh-cCC-CCCeEEEEEcCcHHH
Q 003924 63 VVAMARTGSGKTAAFLVPMLQRLNQ-HVP-QGGVRALILSPTRDL 105 (786)
Q Consensus 63 vvl~a~TGSGKT~afllpile~L~~-~~~-~~g~r~LIL~PtreL 105 (786)
.++.|||||||+-.. ..|.. ... ...-.+++|+|+...
T Consensus 90 ~~VYGPTG~GKSqLl-----RNLis~~lI~P~PETVfFItP~~~m 129 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLL-----RNLISCQLIQPPPETVFFITPQKDM 129 (369)
T ss_pred EEEECCCCCCHHHHH-----HHhhhcCcccCCCCceEEECCCCCC
Confidence 678999999999631 22221 111 234468899987643
No 424
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=88.37 E-value=1 Score=50.34 Aligned_cols=43 Identities=14% Similarity=0.161 Sum_probs=27.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreL 105 (786)
+..++++||||||||.. +..++..+.... ...+++.+-...|+
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~--~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETY--PDRKIVTYEDPIEY 191 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcC--CCceEEEEecCchh
Confidence 44689999999999975 445555554321 23456666555554
No 425
>PRK06321 replicative DNA helicase; Provisional
Probab=88.33 E-value=4.1 Score=47.15 Aligned_cols=112 Identities=16% Similarity=0.166 Sum_probs=54.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHH-
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE- 138 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~- 138 (786)
|.=+|+.|++|.|||...+- +...+... .+..++|++..-. ..|+...+-. ...++....+..|.-....+.
T Consensus 226 G~LiiiaarPgmGKTafal~-ia~~~a~~---~g~~v~~fSLEMs-~~ql~~Rlla--~~s~v~~~~i~~~~l~~~e~~~ 298 (472)
T PRK06321 226 SNLMILAARPAMGKTALALN-IAENFCFQ---NRLPVGIFSLEMT-VDQLIHRIIC--SRSEVESKKISVGDLSGRDFQR 298 (472)
T ss_pred CcEEEEEeCCCCChHHHHHH-HHHHHHHh---cCCeEEEEeccCC-HHHHHHHHHH--hhcCCCHHHhhcCCCCHHHHHH
Confidence 34478999999999975443 44443321 2556777763221 2233332211 112232222222332222332
Q ss_pred ------HHcCCCCEEEE-----CcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 139 ------ELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 139 ------~l~~~~dIiV~-----Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
.+.. ..+.|- |...+...+... ..-..+++||||=.+.+.
T Consensus 299 ~~~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~--~~~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 299 IVSVVNEMQE-HTLLIDDQPGLKITDLRARARRM--KESYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHH--HHhcCCCEEEEcchHHcC
Confidence 2333 345554 333444444331 112357899999998875
No 426
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.30 E-value=0.65 Score=51.39 Aligned_cols=44 Identities=20% Similarity=0.316 Sum_probs=30.5
Q ss_pred HHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHH
Q 003924 57 ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (786)
Q Consensus 57 il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa 106 (786)
+..+.+++++|+||||||.. +-.++..+. ...+++.+-++.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i~-----~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAIP-----PQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHcccC-----CCCCEEEECCCcccc
Confidence 44678999999999999974 333333322 245678888888874
No 427
>PRK09087 hypothetical protein; Validated
Probab=88.30 E-value=1.4 Score=45.76 Aligned_cols=41 Identities=17% Similarity=0.164 Sum_probs=25.3
Q ss_pred eeEEeCCccccccCChHHHHHHHHhhccc-CCceEEEeccCcHH
Q 003924 170 EYVVFDEADCLFGMGFAEQLHKILGQLSE-NRQTLLFSATLPSA 212 (786)
Q Consensus 170 ~~vV~DEah~l~~~gf~~~l~~Il~~l~~-~~q~ll~SATl~~~ 212 (786)
++|++|++|.+. .-...+-.++..+.. .+++|+.|.|.|+.
T Consensus 89 ~~l~iDDi~~~~--~~~~~lf~l~n~~~~~g~~ilits~~~p~~ 130 (226)
T PRK09087 89 GPVLIEDIDAGG--FDETGLFHLINSVRQAGTSLLMTSRLWPSS 130 (226)
T ss_pred CeEEEECCCCCC--CCHHHHHHHHHHHHhCCCeEEEECCCChHH
Confidence 379999999763 234567777766665 44444444444544
No 428
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.24 E-value=1.3 Score=48.98 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=30.3
Q ss_pred HcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHH
Q 003924 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (786)
Q Consensus 58 l~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~ 107 (786)
..+.+++++|+||||||.. +-.++..+- ...+++++=-+.||..
T Consensus 158 ~~~~nili~G~tgSGKTTl-l~aL~~~ip-----~~~ri~tiEd~~El~l 201 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTF-TNAALREIP-----AIERLITVEDAREIVL 201 (332)
T ss_pred HcCCcEEEECCCCCCHHHH-HHHHHhhCC-----CCCeEEEecCCCcccc
Confidence 3578999999999999964 334444332 2456777777777643
No 429
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=88.13 E-value=0.35 Score=54.48 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=37.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l 116 (786)
++++.|+||||||.++++|-+-.. +..+||+=|--|+...+....+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-------CCCEEEEccchhHHHHHHHHHHHc
Confidence 478999999999999998876431 345889999999998877766554
No 430
>PRK08760 replicative DNA helicase; Provisional
Probab=88.12 E-value=2.5 Score=49.10 Aligned_cols=112 Identities=17% Similarity=0.086 Sum_probs=54.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCC-ChhHHH-
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGD-SMESQF- 137 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~-~~~~~~- 137 (786)
|.-+++.|+||.|||...+-.+...... .+..++|++..-. ..|+...+-... .++....+..|. +.+++.
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~----~g~~V~~fSlEMs-~~ql~~Rl~a~~--s~i~~~~i~~g~l~~~e~~~ 301 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIK----SKKGVAVFSMEMS-ASQLAMRLISSN--GRINAQRLRTGALEDEDWAR 301 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHh----cCCceEEEeccCC-HHHHHHHHHHhh--CCCcHHHHhcCCCCHHHHHH
Confidence 4458899999999997655444333222 2456777775332 234443332222 122211122222 222221
Q ss_pred -----HHHcCCCCEEEE-----CcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 138 -----EELAQNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 138 -----~~l~~~~dIiV~-----Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
..+.. ..+.|. |++.+...+.... .-..+++||||=.+.+.
T Consensus 302 ~~~a~~~l~~-~~l~I~d~~~~t~~~I~~~~r~l~--~~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 302 VTGAIKMLKE-TKIFIDDTPGVSPEVLRSKCRRLK--REHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHhc-CCEEEeCCCCCCHHHHHHHHHHHH--HhcCCCEEEEecHHhcC
Confidence 22222 344443 3344444443311 12357899999988774
No 431
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=88.11 E-value=0.47 Score=54.84 Aligned_cols=50 Identities=32% Similarity=0.567 Sum_probs=39.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
.++++.|+||||||..|++|.+-. . .+ -+||.-|--||...+...++..+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~----~~-s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y----PG-SMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c----cC-CEEEEECCCcHHHHHHHHHHHCC
Confidence 469999999999999999997632 1 12 48888899999888877776654
No 432
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.11 E-value=1.8 Score=50.38 Aligned_cols=60 Identities=20% Similarity=0.228 Sum_probs=40.6
Q ss_pred HHHHHHHcC-----CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 52 KTMPLILSG-----ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 52 ~aip~il~g-----~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
..+..++.| .-+++.|++|+|||...+..+.+.+. .|.+++|++ .-|-..|+...+..++
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~-----~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA-----NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 345555644 46999999999999866655544433 366788887 4455677777777665
No 433
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=88.10 E-value=3.4 Score=48.46 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=25.9
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEe
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
.....++||||||.|... ....+..++..-|....+|+.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~-A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKE-AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHH-HHHHHHHHHhhcCCceEEEEEE
Confidence 356789999999998653 2344555555555555555544
No 434
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=88.04 E-value=2.9 Score=48.42 Aligned_cols=145 Identities=14% Similarity=0.174 Sum_probs=82.5
Q ss_pred CChHHHHHHHHHHHc------C----CcEEEEcCCCChHHHHHH-HHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHH
Q 003924 45 VPTPIQRKTMPLILS------G----ADVVAMARTGSGKTAAFL-VPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFT 113 (786)
Q Consensus 45 ~ptpiQ~~aip~il~------g----~dvvl~a~TGSGKT~afl-lpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l 113 (786)
.+-|+|.-++..|+. | +.+++..|-+-|||.... +.+...|..+ ..+....|++|+.+-+.+.+..+
T Consensus 61 ~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~--~~~~~~~i~A~s~~qa~~~F~~a 138 (546)
T COG4626 61 SLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW--RSGAGIYILAPSVEQAANSFNPA 138 (546)
T ss_pred ccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh--hcCCcEEEEeccHHHHHHhhHHH
Confidence 678999999998882 1 236777778889996544 3333333333 45778999999999999988877
Q ss_pred HHHccCCC-CeEEEEEcCCChhHHHHHHcCCCCEEEECcHH---HHHHHh-hccCCCCCceeeEEeCCccccccCChHHH
Q 003924 114 KELGRYTD-LRISLLVGGDSMESQFEELAQNPDIIIATPGR---LMHHLS-EVEDMSLKSVEYVVFDEADCLFGMGFAEQ 188 (786)
Q Consensus 114 ~~l~~~~~-l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgr---ll~~l~-~~~~l~l~~l~~vV~DEah~l~~~gf~~~ 188 (786)
+....... +... ..-...-...+... .+..+. .....+=.+..+.||||.|.....+ ..
T Consensus 139 r~mv~~~~~l~~~--------------~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~--~~ 202 (546)
T COG4626 139 RDMVKRDDDLRDL--------------CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE--DM 202 (546)
T ss_pred HHHHHhCcchhhh--------------hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHH--HH
Confidence 65432211 1100 00011111111111 111111 1112334456689999999876543 55
Q ss_pred HHHHHhhcc--cCCceEEEec
Q 003924 189 LHKILGQLS--ENRQTLLFSA 207 (786)
Q Consensus 189 l~~Il~~l~--~~~q~ll~SA 207 (786)
+..+..-+. ++.+++..|.
T Consensus 203 ~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 203 YSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHHhhhccCcCceEEEEec
Confidence 666655553 3556666664
No 435
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.03 E-value=1.8 Score=45.35 Aligned_cols=84 Identities=23% Similarity=0.230 Sum_probs=45.1
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHHH---HHHHHcCC-cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEE
Q 003924 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKT---MPLILSGA-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (786)
Q Consensus 24 ~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~a---ip~il~g~-dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL 99 (786)
+|+.+|++..+-..+ +..+.++++.. -+.+..++ -+.++|+.|||||...- .+++.+.. +..++|+
T Consensus 15 g~~~~pf~~~~~~~~----~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~~~-----d~~~~v~ 84 (269)
T COG3267 15 GFSRLPFSWDIQPGL----DYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRR-ALLASLNE-----DQVAVVV 84 (269)
T ss_pred hhccCCCccchhhhh----hhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHH-HHHHhcCC-----CceEEEE
Confidence 566666665544443 22333333322 24455666 57899999999998755 44444432 2234444
Q ss_pred c--CcHHHHHHHHHHHHHHc
Q 003924 100 S--PTRDLALQTLKFTKELG 117 (786)
Q Consensus 100 ~--PtreLa~Q~~~~l~~l~ 117 (786)
. ||-..+.-...++..+.
T Consensus 85 i~~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 85 IDKPTLSDATLLEAIVADLE 104 (269)
T ss_pred ecCcchhHHHHHHHHHHHhc
Confidence 4 44444333334555544
No 436
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=87.98 E-value=1.6 Score=50.70 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=28.2
Q ss_pred HHHCCCCCChHHHHHHHHHHHcC-C-cEEEEcCCCChHHHHHHHHHHHHH
Q 003924 38 IKRKGYKVPTPIQRKTMPLILSG-A-DVVAMARTGSGKTAAFLVPMLQRL 85 (786)
Q Consensus 38 l~~~g~~~ptpiQ~~aip~il~g-~-dvvl~a~TGSGKT~afllpile~L 85 (786)
|..+|| .|-|...+..++.. . -+++.||||||||... ..++..+
T Consensus 221 l~~Lg~---~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 221 LETLGM---SPELLSRFERLIRRPHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred HHHcCC---CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 344554 45566666666554 3 3789999999999763 3344444
No 437
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.88 E-value=6.8 Score=40.18 Aligned_cols=127 Identities=13% Similarity=0.126 Sum_probs=69.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc---CcHHHHHHHHHH----HHHHccCCCCeEEEE-EcCCC
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS---PTRDLALQTLKF----TKELGRYTDLRISLL-VGGDS 132 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~---PtreLa~Q~~~~----l~~l~~~~~l~v~~l-~gg~~ 132 (786)
.=+++.|+-|+|||+..+..++=.| ..+.++.+++ |+++...|+... ...|..+ .+.+..+ ..+..
T Consensus 29 sL~lIEGd~~tGKSvLsqr~~YG~L-----~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G-~l~~~~~~~~~~~ 102 (235)
T COG2874 29 SLILIEGDNGTGKSVLSQRFAYGFL-----MNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSG-RLLFFPVNLEPVN 102 (235)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHH-----hCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcc-eeEEEEecccccc
Confidence 3489999999999986554443333 3477788887 677777776541 2222111 1112111 01111
Q ss_pred -hhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHH---hhcccCCceEEEecc
Q 003924 133 -MESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL---GQLSENRQTLLFSAT 208 (786)
Q Consensus 133 -~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il---~~l~~~~q~ll~SAT 208 (786)
...+ -..+++.+.+ ......-+++|+|-...+.-..-...+.+++ ..+...-++|++|+-
T Consensus 103 ~~~~~--------------~~~~L~~l~~--~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r~l~d~gKvIilTvh 166 (235)
T COG2874 103 WGRRS--------------ARKLLDLLLE--FIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLRKLSDLGKVIILTVH 166 (235)
T ss_pred cChHH--------------HHHHHHHHHh--hHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 1111 1234555543 3445667899999888765433222333333 334456789999987
Q ss_pred C
Q 003924 209 L 209 (786)
Q Consensus 209 l 209 (786)
+
T Consensus 167 p 167 (235)
T COG2874 167 P 167 (235)
T ss_pred h
Confidence 5
No 438
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=87.85 E-value=1.3 Score=44.81 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=15.3
Q ss_pred EEEEcCCCChHHHHHHHH-HHHHHh
Q 003924 63 VVAMARTGSGKTAAFLVP-MLQRLN 86 (786)
Q Consensus 63 vvl~a~TGSGKT~afllp-ile~L~ 86 (786)
.+++|.+|||||+..+.- ++..+.
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~ 27 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALK 27 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGG
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHh
Confidence 578999999999876665 444433
No 439
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=87.85 E-value=1.3 Score=44.32 Aligned_cols=45 Identities=20% Similarity=0.337 Sum_probs=26.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~ 109 (786)
.+.++++.|++|+|||..+...+.+.+. .|..++++ +..+|...+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~-----~g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIR-----KGYSVLFI-TASDLLDEL 90 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHH-----TT--EEEE-EHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhcc-----CCcceeEe-ecCceeccc
Confidence 4678999999999999765544433333 25555554 555665553
No 440
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=87.76 E-value=0.83 Score=53.59 Aligned_cols=43 Identities=26% Similarity=0.343 Sum_probs=35.1
Q ss_pred CChHHHHHHHHHH----HcCCcEEEEcCCCChHHHHHHHHHHHHHhh
Q 003924 45 VPTPIQRKTMPLI----LSGADVVAMARTGSGKTAAFLVPMLQRLNQ 87 (786)
Q Consensus 45 ~ptpiQ~~aip~i----l~g~dvvl~a~TGSGKT~afllpile~L~~ 87 (786)
+|+.||.+.+..+ -.|+-.++.+|||+|||+..+...+.-|..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 7999999877654 468889999999999999888777765544
No 441
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=87.60 E-value=2.1 Score=45.31 Aligned_cols=20 Identities=30% Similarity=0.308 Sum_probs=17.2
Q ss_pred HHcCCcEEEEcCCCChHHHH
Q 003924 57 ILSGADVVAMARTGSGKTAA 76 (786)
Q Consensus 57 il~g~dvvl~a~TGSGKT~a 76 (786)
+-.|+.+++.|+.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 44788999999999999963
No 442
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=87.56 E-value=3 Score=49.48 Aligned_cols=133 Identities=17% Similarity=0.242 Sum_probs=79.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC--CCeEEEEEcCCChhHHH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT--DLRISLLVGGDSMESQF 137 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~--~l~v~~l~gg~~~~~~~ 137 (786)
.+-.|+..|-=.|||.+.. +++..+... ..|.++++.+|.+..+..+++.+..+.+.. +-.+..+.| ... .+
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s--~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I--~i 327 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT--FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI--SF 327 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh--CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE--EE
Confidence 3567888888999998655 666554432 148899999999999999999887754321 111212222 211 00
Q ss_pred HHHcCC--CCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhc-ccCCceEEEeccCc
Q 003924 138 EELAQN--PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSATLP 210 (786)
Q Consensus 138 ~~l~~~--~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l-~~~~q~ll~SATl~ 210 (786)
.+.++ ..|.+++- .+.+...=.+++++|||||+-+-+ ..+..++-.+ ..++++|++|.|-.
T Consensus 328 -~f~nG~kstI~FaSa-------rntNsiRGqtfDLLIVDEAqFIk~----~al~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 328 -SFPDGSRSTIVFASS-------HNTNGIRGQDFNLLFVDEANFIRP----DAVQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred -EecCCCccEEEEEec-------cCCCCccCCcccEEEEechhhCCH----HHHHHHHHHHhccCccEEEEecCCC
Confidence 01112 24555421 111122233688999999998775 3444444222 23889999998854
No 443
>CHL00176 ftsH cell division protein; Validated
Probab=87.52 E-value=1.4 Score=52.85 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 003924 61 ADVVAMARTGSGKTAAF 77 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~af 77 (786)
+.+++.||+|+|||+..
T Consensus 217 ~gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLA 233 (638)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46999999999999754
No 444
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=87.44 E-value=2.5 Score=45.99 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=65.0
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCCh-hHHHHHHc-CCCCEEEECcHHHHHHHhhccCCCCCc
Q 003924 91 QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSM-ESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKS 168 (786)
Q Consensus 91 ~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~-~~~~~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~ 168 (786)
..+..+||.+|+.+..+|++..++.-. ...++..++..+.. .+....+. +..+|+|+|. +|++ .+.+.+
T Consensus 303 ~~~~P~liF~p~I~~~eq~a~~lk~~~--~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT-----ILER--GVTfp~ 373 (441)
T COG4098 303 KTGRPVLIFFPEIETMEQVAAALKKKL--PKETIASVHSEDQHRKEKVEAFRDGKITLLITTT-----ILER--GVTFPN 373 (441)
T ss_pred hcCCcEEEEecchHHHHHHHHHHHhhC--CccceeeeeccCccHHHHHHHHHcCceEEEEEee-----hhhc--cccccc
Confidence 456779999999999999999986532 23454555554432 23334443 5678999984 3444 688999
Q ss_pred eeeEEeCCccccccCChHHHHHHHHhhc
Q 003924 169 VEYVVFDEADCLFGMGFAEQLHKILGQL 196 (786)
Q Consensus 169 l~~vV~DEah~l~~~gf~~~l~~Il~~l 196 (786)
++++|++--|+++.. ..|..|..+.
T Consensus 374 vdV~Vlgaeh~vfTe---saLVQIaGRv 398 (441)
T COG4098 374 VDVFVLGAEHRVFTE---SALVQIAGRV 398 (441)
T ss_pred ceEEEecCCcccccH---HHHHHHhhhc
Confidence 999999999998853 4555555544
No 445
>PRK05636 replicative DNA helicase; Provisional
Probab=87.44 E-value=2.6 Score=49.16 Aligned_cols=109 Identities=19% Similarity=0.298 Sum_probs=53.2
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc---CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS---PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF 137 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~---PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~ 137 (786)
.-+++.|+||+|||...+-.+...... .+..++|++ |..+|+..+.. ...++....+..|.-.++.+
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~----~g~~v~~fSlEMs~~ql~~R~ls------~~s~v~~~~i~~g~l~~~e~ 335 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIK----HNKASVIFSLEMSKSEIVMRLLS------AEAEVRLSDMRGGKMDEDAW 335 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHh----CCCeEEEEEeeCCHHHHHHHHHH------HhcCCCHHHHhcCCCCHHHH
Confidence 447889999999997555333322222 245677775 33444443322 11222222233333223333
Q ss_pred HHH------cCCCCEEEE-CcH----HHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 138 EEL------AQNPDIIIA-TPG----RLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 138 ~~l------~~~~dIiV~-Tpg----rll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
..+ ..+..+.|- +|+ .+...+.... .-..+++||||=.|.|.
T Consensus 336 ~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~--~~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 336 EKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLK--QKHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHH--HhcCCCEEEEcchHhcC
Confidence 221 123445443 333 2333222210 11347899999999875
No 446
>PRK05595 replicative DNA helicase; Provisional
Probab=87.42 E-value=1.2 Score=51.10 Aligned_cols=39 Identities=26% Similarity=0.177 Sum_probs=25.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
|.-+++.|+||.|||...+--+...... .|.+++|++..
T Consensus 201 g~liviaarpg~GKT~~al~ia~~~a~~----~g~~vl~fSlE 239 (444)
T PRK05595 201 GDMILIAARPSMGKTTFALNIAEYAALR----EGKSVAIFSLE 239 (444)
T ss_pred CcEEEEEecCCCChHHHHHHHHHHHHHH----cCCcEEEEecC
Confidence 4457889999999997554333322222 35678888754
No 447
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=87.39 E-value=2.8 Score=40.21 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=31.1
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcHHH
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSAL 213 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l 213 (786)
+.+.+++|+||--.-++......+.+++..+. .+++++.--+..+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~---~til~~th~~~~~ 130 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSHDRYFL 130 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHcC---CEEEEEECCHHHH
Confidence 44667999999998888777778877777662 3555555443433
No 448
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=87.38 E-value=5.8 Score=43.42 Aligned_cols=144 Identities=16% Similarity=0.111 Sum_probs=60.3
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcH-HHHHHHHH---HHHHHccC-CCCeEEEEEcCCChhHHHH
Q 003924 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR-DLALQTLK---FTKELGRY-TDLRISLLVGGDSMESQFE 138 (786)
Q Consensus 64 vl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptr-eLa~Q~~~---~l~~l~~~-~~l~v~~l~gg~~~~~~~~ 138 (786)
++.++.|+|||.+..+.++..+.... ....++++ ||. .|...+.. .+..+... ..+.......... .
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~--~~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRP--PGRRVIIA-STYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRKI-I---- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSS--S--EEEEE-ESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSEE-E----
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCC--CCcEEEEe-cCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCcE-E----
Confidence 57899999999988777776665531 12445555 555 44444332 33333322 1222211111000 0
Q ss_pred HHcCCCCEEEECcHHH--HHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccC--cHHHH
Q 003924 139 ELAQNPDIIIATPGRL--MHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL--PSALA 214 (786)
Q Consensus 139 ~l~~~~dIiV~Tpgrl--l~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl--~~~l~ 214 (786)
+.++..|.+.+-+.- ..-+. . ..+.+|||||+-.+.+..+...+...+.... ....+++|.|+ ...+.
T Consensus 73 -~~nG~~i~~~~~~~~~~~~~~~---G---~~~~~i~iDE~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~p~~~~~~~~ 144 (384)
T PF03237_consen 73 -LPNGSRIQFRGADSPDSGDNIR---G---FEYDLIIIDEAAKVPDDAFSELIRRLRATWG-GSIRMYISTPPNPGGWFY 144 (384)
T ss_dssp -ETTS-EEEEES-----SHHHHH---T---S--SEEEEESGGGSTTHHHHHHHHHHHHCST-T--EEEEEE---SSSHHH
T ss_pred -ecCceEEEEecccccccccccc---c---cccceeeeeecccCchHHHHHHHHhhhhccc-CcceEEeecCCCCCCcee
Confidence 034455666553210 11111 1 4567999999988765434444433333222 22222555543 33444
Q ss_pred HHHHhcCCC
Q 003924 215 EFAKAGLRD 223 (786)
Q Consensus 215 ~~~~~~l~~ 223 (786)
.+......+
T Consensus 145 ~~~~~~~~~ 153 (384)
T PF03237_consen 145 EIFQRNLDD 153 (384)
T ss_dssp HHHHHHHCT
T ss_pred eeeehhhcC
Confidence 454444443
No 449
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=87.35 E-value=1.5 Score=44.72 Aligned_cols=41 Identities=20% Similarity=0.331 Sum_probs=25.3
Q ss_pred eeEEeCCccccc-c----CChHHHHHHHHhhccc-CCceEEEeccCc
Q 003924 170 EYVVFDEADCLF-G----MGFAEQLHKILGQLSE-NRQTLLFSATLP 210 (786)
Q Consensus 170 ~~vV~DEah~l~-~----~gf~~~l~~Il~~l~~-~~q~ll~SATl~ 210 (786)
-+|||||+|.+. . ..+...+..++..... ....+.++++..
T Consensus 120 ~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~ 166 (234)
T PF01637_consen 120 VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSD 166 (234)
T ss_dssp EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSH
T ss_pred EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCch
Confidence 589999999998 2 2355666666666332 334455666653
No 450
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=87.24 E-value=1.9 Score=47.29 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHH
Q 003924 61 ADVVAMARTGSGKTAAF 77 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~af 77 (786)
+.|++.||+|+|||+.+
T Consensus 186 KGVLLYGPPGTGKTLLA 202 (406)
T COG1222 186 KGVLLYGPPGTGKTLLA 202 (406)
T ss_pred CceEeeCCCCCcHHHHH
Confidence 67999999999999853
No 451
>PRK13695 putative NTPase; Provisional
Probab=87.20 E-value=4.8 Score=39.75 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
.+++.|+.|+|||..+.
T Consensus 2 ~i~ltG~~G~GKTTll~ 18 (174)
T PRK13695 2 KIGITGPPGVGKTTLVL 18 (174)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998655
No 452
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=87.14 E-value=1.3 Score=52.56 Aligned_cols=41 Identities=22% Similarity=0.373 Sum_probs=29.9
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEe
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
+.+-.++|+|||-.-+|..-...+.+.+..+..++.++..+
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIa 521 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA 521 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEe
Confidence 45668999999999888877777777777666565444433
No 453
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=87.10 E-value=1.5 Score=43.92 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=28.2
Q ss_pred HHHCCCCCChHHHHHHHHHHH-cCCcEEEEcCCCChHHHHH
Q 003924 38 IKRKGYKVPTPIQRKTMPLIL-SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 38 l~~~g~~~ptpiQ~~aip~il-~g~dvvl~a~TGSGKT~af 77 (786)
|.+.|+ +++-|...+...+ .+..+++.|+||||||..+
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 444554 6677887777655 4678999999999999753
No 454
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=87.03 E-value=1.5 Score=47.38 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=24.6
Q ss_pred ceeeEEeCCccccccCCh--HHHHHHHHhhcccCC--ceEEEecc
Q 003924 168 SVEYVVFDEADCLFGMGF--AEQLHKILGQLSENR--QTLLFSAT 208 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~gf--~~~l~~Il~~l~~~~--q~ll~SAT 208 (786)
.+.++||||+|.++.-.. ...+...++.+.... .+|++ +|
T Consensus 145 ~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v-Gt 188 (302)
T PF05621_consen 145 GVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV-GT 188 (302)
T ss_pred CCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe-cc
Confidence 678999999999875433 334445555555443 33433 55
No 455
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=86.97 E-value=3.2 Score=42.19 Aligned_cols=38 Identities=18% Similarity=0.307 Sum_probs=26.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
|.-+.+.|++|||||...+..+.+... .+.+++|+.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~-----~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAAR-----QGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEECC
Confidence 455889999999999876655444332 25567777764
No 456
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=86.90 E-value=8.2 Score=40.27 Aligned_cols=55 Identities=22% Similarity=0.205 Sum_probs=32.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhh-------cCCCCCeEEEEEc---CcHHHHHHHHHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQ-------HVPQGGVRALILS---PTRDLALQTLKFTKEL 116 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~-------~~~~~g~r~LIL~---PtreLa~Q~~~~l~~l 116 (786)
-.++.|+.|+|||...+-.++..... .....+.++||++ |..++...+......+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~~ 67 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQHL 67 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhhc
Confidence 36899999999998766555543211 1122356788988 4445555444444433
No 457
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=86.84 E-value=3.5 Score=45.35 Aligned_cols=42 Identities=24% Similarity=0.115 Sum_probs=26.3
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEecc
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SAT 208 (786)
-...+++|||+||.|... ....+..+++.=|+....||.|..
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 356789999999998753 344555555554444544444433
No 458
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=86.57 E-value=0.65 Score=55.17 Aligned_cols=50 Identities=22% Similarity=0.259 Sum_probs=41.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
.++++.||||||||..|++|-+... +.-+||+=|--|+...+....+.++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-------~~S~VV~DpKGEl~~~Ta~~R~~~G 208 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-------EDSVVVHDIKLENYELTSGWREKQG 208 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-------CCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 4699999999999999999988653 2248899999999999888877654
No 459
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=86.38 E-value=1.4 Score=48.80 Aligned_cols=43 Identities=16% Similarity=0.341 Sum_probs=27.3
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa 106 (786)
+..++++||||||||... ..++..+... .+.+++.+-...|+.
T Consensus 122 ~g~ili~G~tGSGKTT~l-~al~~~i~~~---~~~~i~tiEdp~E~~ 164 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL-ASMIDYINKN---AAGHIITIEDPIEYV 164 (343)
T ss_pred CcEEEEECCCCCCHHHHH-HHHHHhhCcC---CCCEEEEEcCChhhh
Confidence 456899999999999754 3344444321 244667766655553
No 460
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=86.34 E-value=2 Score=45.72 Aligned_cols=44 Identities=23% Similarity=0.374 Sum_probs=29.9
Q ss_pred HcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHH
Q 003924 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLA 106 (786)
Q Consensus 58 l~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa 106 (786)
..+..++++|+||||||.. +..++..+... ..+++++-.+.|+.
T Consensus 125 ~~~~~ili~G~tGSGKTT~-l~all~~i~~~----~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTL-LNALLEEIPPE----DERIVTIEDPPELR 168 (270)
T ss_dssp HTTEEEEEEESTTSSHHHH-HHHHHHHCHTT----TSEEEEEESSS-S-
T ss_pred ccceEEEEECCCccccchH-HHHHhhhcccc----ccceEEecccccee
Confidence 3467899999999999975 34445544432 46788888877763
No 461
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=86.33 E-value=0.49 Score=47.27 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=25.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcH
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptr 103 (786)
=.++.||++||||.-.+ -.+.++.. .+.+++++-|..
T Consensus 3 l~~i~GpM~sGKS~eLi-~~~~~~~~----~~~~v~~~kp~~ 39 (176)
T PF00265_consen 3 LEFITGPMFSGKSTELI-RRIHRYEI----AGKKVLVFKPAI 39 (176)
T ss_dssp EEEEEESTTSSHHHHHH-HHHHHHHH----TT-EEEEEEEST
T ss_pred EEEEECCcCChhHHHHH-HHHHHHHh----CCCeEEEEEecc
Confidence 35789999999998643 33444433 477899999854
No 462
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=86.29 E-value=4.6 Score=44.62 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=14.1
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
.+++.||.|+|||.+..
T Consensus 38 ~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR 54 (355)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 463
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=86.28 E-value=5.8 Score=43.49 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=19.8
Q ss_pred HHHHHHcCCcEEEEcCCCChHHHHH
Q 003924 53 TMPLILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 53 aip~il~g~dvvl~a~TGSGKT~af 77 (786)
.+-.+..++++++.|++|+|||...
T Consensus 57 vl~~l~~~~~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 57 ICAGFAYDRRVMVQGYHGTGKSTHI 81 (327)
T ss_pred HHHHHhcCCcEEEEeCCCChHHHHH
Confidence 3444556889999999999999753
No 464
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.23 E-value=5.9 Score=46.12 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=22.9
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEecc
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SAT 208 (786)
.....++||||||.+....+ ..+...+...|+. -++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~-~v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPR-TIFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCC-eEEEEEEC
Confidence 45678999999998764332 3333344433333 34444444
No 465
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=86.20 E-value=2.3 Score=49.12 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=50.3
Q ss_pred CcEEEEEcchhhHHHHHHHHHHc-----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEec-----ccc-cccCCCCc
Q 003924 267 QQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAA-RGIDIPLL 335 (786)
Q Consensus 267 ~k~IVF~~t~~~ae~l~~~L~~~-----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTd-----v~a-rGlDIp~v 335 (786)
.++||.|+|++-+..++..+... ++.+..++|+.+.......+. ...+|+|+|+ .+. ..+++.++
T Consensus 73 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 73 VQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 47999999999999988877653 577888999998766544332 5678999994 222 24566666
Q ss_pred ceeEe
Q 003924 336 DNVIN 340 (786)
Q Consensus 336 ~~VI~ 340 (786)
++||.
T Consensus 149 ~~lVi 153 (460)
T PRK11776 149 NTLVL 153 (460)
T ss_pred CEEEE
Confidence 66663
No 466
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=86.13 E-value=9.2 Score=46.21 Aligned_cols=112 Identities=20% Similarity=0.298 Sum_probs=71.6
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHH---H-cCCCCEEEECcHHHHHHHhhccCCCCC
Q 003924 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE---L-AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (786)
Q Consensus 92 ~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~---l-~~~~dIiV~Tpgrll~~l~~~~~l~l~ 167 (786)
.+.++||+|+|+..+..+.+.+.+.+ +.+..++|+....+.... + .+..+|+||| +.+. ..+++.
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~g----i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~--rGfDiP 509 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELG----IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR--EGLDLP 509 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhc----cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc--CCeeeC
Confidence 47789999999999999998888764 788888887665433222 2 3568899988 2333 378999
Q ss_pred ceeeEEeCCccccccCChHHHHHHHHhhcc--cCCceEEEeccCcHHHH
Q 003924 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLS--ENRQTLLFSATLPSALA 214 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~gf~~~l~~Il~~l~--~~~q~ll~SATl~~~l~ 214 (786)
.+++||+-+++...-......+..++.+.. ....++++--.....+.
T Consensus 510 ~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~ 558 (655)
T TIGR00631 510 EVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQ 558 (655)
T ss_pred CCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHH
Confidence 999998888876432222333433333322 12334555444444433
No 467
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=86.05 E-value=4.2 Score=43.49 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=18.3
Q ss_pred HHHHHHHcC---CcEEEEcCCCChHHHH
Q 003924 52 KTMPLILSG---ADVVAMARTGSGKTAA 76 (786)
Q Consensus 52 ~aip~il~g---~dvvl~a~TGSGKT~a 76 (786)
..++.+... +++++.|++|||||..
T Consensus 100 ~~l~~l~~~~~~~~~~i~g~~g~GKttl 127 (270)
T TIGR02858 100 KLLPYLVRNNRVLNTLIISPPQCGKTTL 127 (270)
T ss_pred HHHHHHHhCCCeeEEEEEcCCCCCHHHH
Confidence 334555543 5789999999999974
No 468
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=86.00 E-value=2.4 Score=52.27 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afl 78 (786)
+..+++.||+|+|||..+-
T Consensus 347 ~~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGK 365 (775)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3458999999999997543
No 469
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=85.93 E-value=5.6 Score=43.61 Aligned_cols=42 Identities=24% Similarity=0.246 Sum_probs=26.2
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEecc
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SAT 208 (786)
....+++|||+||.|... ....+..+++.=|++...||.|..
T Consensus 106 ~~~~kV~iI~~ae~m~~~-AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 106 LNGYRLFVIEPADAMNES-ASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred cCCceEEEecchhhhCHH-HHHHHHHHhcCCCCCeEEEEEECC
Confidence 456789999999998753 344455555554444444554444
No 470
>PHA00350 putative assembly protein
Probab=85.90 E-value=1.8 Score=48.79 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=17.9
Q ss_pred EEEEcCCCChHHHHHHHH-HHHHHhh
Q 003924 63 VVAMARTGSGKTAAFLVP-MLQRLNQ 87 (786)
Q Consensus 63 vvl~a~TGSGKT~afllp-ile~L~~ 87 (786)
.++.|..|||||+..+.- ++..+..
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 578999999999877653 4444443
No 471
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=85.87 E-value=5.1 Score=41.04 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=25.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~ 100 (786)
|.-+++.|++|||||...+..+.+... .+.+++++.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~-----~g~~v~yi~ 54 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAG-----QGKKVAYID 54 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEE
Confidence 345889999999999876655544432 255688874
No 472
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=85.75 E-value=2.7 Score=51.67 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=54.4
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHc----C-CCcee-ecCCCCHHHHHHHHHHHhcCCcEEEEEecc-cccccC
Q 003924 265 SDQQTLIFVSTKHHVEFLNVLFREE----G-LEPSV-CYGDMDQDARKIHVSRFRARKTMFLIVTDV-AARGID 331 (786)
Q Consensus 265 ~~~k~IVF~~t~~~ae~l~~~L~~~----g-~~v~~-lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv-~arGlD 331 (786)
.+.++++.+||..-+...++.|... + ..+.+ +||.|+..+++..+++|.+|..+|||+|.. +..-+|
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e 197 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFE 197 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHH
Confidence 5689999999999988888887754 2 44433 899999999999999999999999999854 544443
No 473
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=85.75 E-value=1.1 Score=52.73 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=27.3
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEe
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
+.+-+++|+||+-.-+|......+.+.+..+.+++-+|..|
T Consensus 486 l~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiIt 526 (529)
T TIGR02868 486 LADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVIT 526 (529)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 56677899999988777666666766666654454444433
No 474
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=85.73 E-value=4.2 Score=48.34 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=56.7
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCC
Q 003924 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (786)
Q Consensus 92 ~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~ 167 (786)
.+.++||.|+|+..+.++++.+... ++.+..++|+.+..+....+ .+..+|+|||. .+.. .+++.
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTd-----v~ar--GIDip 324 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATD-----VAAR--GLHID 324 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEeh-----hhhc--CCCcc
Confidence 3568999999999999999888765 47899999987776554433 25789999994 3443 78888
Q ss_pred ceeeEEeCC
Q 003924 168 SVEYVVFDE 176 (786)
Q Consensus 168 ~l~~vV~DE 176 (786)
++.+||.-+
T Consensus 325 ~V~~VInyd 333 (572)
T PRK04537 325 GVKYVYNYD 333 (572)
T ss_pred CCCEEEEcC
Confidence 998887643
No 475
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=85.53 E-value=0.56 Score=60.48 Aligned_cols=94 Identities=28% Similarity=0.380 Sum_probs=75.3
Q ss_pred cEEEEEcchhhHHHHHHHHHHcC-CCceeecCCCC-----------HHHHHHHHHHHhcCCcEEEEEecccccccCCCCc
Q 003924 268 QTLIFVSTKHHVEFLNVLFREEG-LEPSVCYGDMD-----------QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (786)
Q Consensus 268 k~IVF~~t~~~ae~l~~~L~~~g-~~v~~lhg~l~-----------q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v 335 (786)
..|+|++....+..+.+.+.... ..+..+.|.+. +..+..++..|....+.+|++|.++..|+|+|.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 46899999888888888777652 22222333221 1235678999999999999999999999999999
Q ss_pred ceeEecCCCCCHhHHHHHhhccccCC
Q 003924 336 DNVINWDFPPKPKIFVHRVGRAARAG 361 (786)
Q Consensus 336 ~~VI~~d~P~s~~~~vQRvGR~gR~G 361 (786)
+.|+.++.|.....|+|..||+-++.
T Consensus 374 ~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 NLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999998764
No 476
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=85.51 E-value=3.8 Score=46.13 Aligned_cols=130 Identities=19% Similarity=0.198 Sum_probs=75.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc-C-cHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH
Q 003924 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS-P-TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (786)
Q Consensus 63 vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~-P-treLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l 140 (786)
++++|=-|||||.+..- +..+|.. .+.++++++ . .|.-|.. .++.++...++.+.....+.+.-+-
T Consensus 103 ImmvGLQGsGKTTt~~K-LA~~lkk----~~~kvllVaaD~~RpAA~e---QL~~La~q~~v~~f~~~~~~~Pv~I---- 170 (451)
T COG0541 103 ILMVGLQGSGKTTTAGK-LAKYLKK----KGKKVLLVAADTYRPAAIE---QLKQLAEQVGVPFFGSGTEKDPVEI---- 170 (451)
T ss_pred EEEEeccCCChHhHHHH-HHHHHHH----cCCceEEEecccCChHHHH---HHHHHHHHcCCceecCCCCCCHHHH----
Confidence 67789999999987542 2223333 355555555 3 3443433 4566666666665444222211110
Q ss_pred cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc-cCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHh
Q 003924 141 AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (786)
Q Consensus 141 ~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~-~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (786)
+ ..-+. .+....+++||+|=|-|+- +......+.+|-..+.+.--++.+=|+........+++
T Consensus 171 --------a-----k~al~---~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~a 234 (451)
T COG0541 171 --------A-----KAALE---KAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKA 234 (451)
T ss_pred --------H-----HHHHH---HHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHH
Confidence 0 01111 2233456789999888764 33456677777777777777777888887777777766
Q ss_pred c
Q 003924 220 G 220 (786)
Q Consensus 220 ~ 220 (786)
+
T Consensus 235 F 235 (451)
T COG0541 235 F 235 (451)
T ss_pred H
Confidence 5
No 477
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=85.44 E-value=1.5 Score=48.94 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 003924 61 ADVVAMARTGSGKTAAF 77 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~af 77 (786)
+.+++.||+|+|||+..
T Consensus 157 ~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLA 173 (364)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56999999999999754
No 478
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.42 E-value=3.2 Score=43.55 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=16.0
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
+.|++.+|+|+|||+++-
T Consensus 212 kgvllygppgtgktl~ar 229 (435)
T KOG0729|consen 212 KGVLLYGPPGTGKTLCAR 229 (435)
T ss_pred CceEEeCCCCCchhHHHH
Confidence 679999999999999754
No 479
>PHA00012 I assembly protein
Probab=85.34 E-value=10 Score=41.39 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhh
Q 003924 63 VVAMARTGSGKTAAFLVPMLQRLNQ 87 (786)
Q Consensus 63 vvl~a~TGSGKT~afllpile~L~~ 87 (786)
-++.|..|||||+..+.-++..+.+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~~ 28 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLVK 28 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHc
Confidence 5789999999999888877777665
No 480
>CHL00095 clpC Clp protease ATP binding subunit
Probab=85.30 E-value=4.4 Score=50.36 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.7
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
.++++.||+|+|||+..-
T Consensus 201 ~n~lL~G~pGvGKTal~~ 218 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAE 218 (821)
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 579999999999998654
No 481
>PRK09165 replicative DNA helicase; Provisional
Probab=85.30 E-value=5.5 Score=46.53 Aligned_cols=116 Identities=17% Similarity=0.120 Sum_probs=55.7
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcC----------CCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcC
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHV----------PQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG 130 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~----------~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg 130 (786)
.-+|+.|+||.|||...+-.+........ ...|..++|++..-. ..|+...+-... .++....+..|
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs-~~ql~~R~la~~--s~v~~~~i~~~ 294 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMS-AEQLATRILSEQ--SEISSSKIRRG 294 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCC-HHHHHHHHHHHh--cCCCHHHHhcC
Confidence 45889999999999765544443322211 112567888874332 234333322221 22222222233
Q ss_pred CChhHHHHHHc------CCCCEEEE-----CcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 131 DSMESQFEELA------QNPDIIIA-----TPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 131 ~~~~~~~~~l~------~~~dIiV~-----Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
.-.+..+..+. ....+.|- |+..+...+... ..-..+++||||=.+.+.
T Consensus 295 ~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l--~~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 295 KISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRL--KRQHGLDLLVVDYLQLIR 354 (497)
T ss_pred CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHH--HHhcCCCEEEEcchHhcc
Confidence 22222222211 12344443 334444444331 112357899999999775
No 482
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.04 E-value=12 Score=43.55 Aligned_cols=100 Identities=17% Similarity=0.195 Sum_probs=74.6
Q ss_pred EcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----c
Q 003924 66 MARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----A 141 (786)
Q Consensus 66 ~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~ 141 (786)
+.-.+.|++..-++.+.+.+... -.+.+||.+-+.+-|.|++..+. .+.++.+..++|..+..+.-+.+ .
T Consensus 363 QelvF~gse~~K~lA~rq~v~~g---~~PP~lIfVQs~eRak~L~~~L~---~~~~i~v~vIh~e~~~~qrde~~~~FR~ 436 (593)
T KOG0344|consen 363 QELVFCGSEKGKLLALRQLVASG---FKPPVLIFVQSKERAKQLFEELE---IYDNINVDVIHGERSQKQRDETMERFRI 436 (593)
T ss_pred hhheeeecchhHHHHHHHHHhcc---CCCCeEEEEecHHHHHHHHHHhh---hccCcceeeEecccchhHHHHHHHHHhc
Confidence 33457788877777777777654 35569999999999999888775 45679999999987665544333 2
Q ss_pred CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcc
Q 003924 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (786)
Q Consensus 142 ~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah 178 (786)
+...|+||| +++.+ .++|..+.+||-+..-
T Consensus 437 g~IwvLicT-----dll~R--GiDf~gvn~VInyD~p 466 (593)
T KOG0344|consen 437 GKIWVLICT-----DLLAR--GIDFKGVNLVINYDFP 466 (593)
T ss_pred cCeeEEEeh-----hhhhc--cccccCcceEEecCCC
Confidence 567899999 45554 6999999999997654
No 483
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=85.01 E-value=3.2 Score=45.57 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=34.5
Q ss_pred HHHHHHc------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHH
Q 003924 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (786)
Q Consensus 53 aip~il~------g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q 108 (786)
.+..++. |+-+.+.||+|||||...+..+.+... .+..++|+.+...+-.+
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~-----~g~~~vyId~E~~~~~~ 98 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQK-----LGGTVAFIDAEHALDPV 98 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCCEEEECccccHHHH
Confidence 4555555 356889999999999766655544432 25678899887665543
No 484
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=84.69 E-value=3.9 Score=47.14 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=36.2
Q ss_pred HHHHHHc-----CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 53 TMPLILS-----GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 53 aip~il~-----g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
-+..++. |.-+++.|++|+|||...+..+.. +.. .+.++||++.. |-..|+......++
T Consensus 82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~-~a~----~g~kvlYvs~E-Es~~qi~~ra~rlg 145 (454)
T TIGR00416 82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQ-LAK----NQMKVLYVSGE-ESLQQIKMRAIRLG 145 (454)
T ss_pred HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHH-HHh----cCCcEEEEECc-CCHHHHHHHHHHcC
Confidence 3445554 355899999999999865543332 222 24568888864 33456655555543
No 485
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=84.63 E-value=5.1 Score=47.47 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=14.8
Q ss_pred EEEEcCCCChHHHHHHH
Q 003924 63 VVAMARTGSGKTAAFLV 79 (786)
Q Consensus 63 vvl~a~TGSGKT~afll 79 (786)
+++.||.|+|||.++.+
T Consensus 41 yLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 41 YIFSGPRGVGKTSSARA 57 (563)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78999999999987654
No 486
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=84.58 E-value=17 Score=40.09 Aligned_cols=14 Identities=21% Similarity=0.292 Sum_probs=12.1
Q ss_pred EEEEcCCCChHHHH
Q 003924 63 VVAMARTGSGKTAA 76 (786)
Q Consensus 63 vvl~a~TGSGKT~a 76 (786)
+-+.|+.|+|||..
T Consensus 59 igi~G~~GaGKSTl 72 (332)
T PRK09435 59 IGITGVPGVGKSTF 72 (332)
T ss_pred EEEECCCCCCHHHH
Confidence 66899999999963
No 487
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=84.48 E-value=2.2 Score=40.79 Aligned_cols=113 Identities=18% Similarity=0.190 Sum_probs=60.2
Q ss_pred eeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEE
Q 003924 241 LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320 (786)
Q Consensus 241 ~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~IL 320 (786)
..|+.+........+..++.+....+.+++|+|++..+++.|-+.|-...-...+-|+-.... ......|+
T Consensus 4 v~Fy~l~~~~~~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~ 74 (137)
T PF04364_consen 4 VDFYHLSSDDLERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PAARQPVL 74 (137)
T ss_dssp EEEEE-S----HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------STT--SEE
T ss_pred EEEEEcCCCcHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CCCCCeEE
Confidence 456666655556778888888888899999999999999999999988766655556543221 11235799
Q ss_pred EEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccH
Q 003924 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (786)
Q Consensus 321 VaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~ 375 (786)
|+++... -..+..+++||.+... +.. . . +-..++-||..++.
T Consensus 75 i~~~~~~--~~~~~~~vLinL~~~~-p~~-~------~---~f~rvieiv~~~~~ 116 (137)
T PF04364_consen 75 ITWDQEA--NPNNHADVLINLSGEV-PPF-F------S---RFERVIEIVDQDDE 116 (137)
T ss_dssp EE-TTS------S--SEEEE--SS---GG-G------G---G-SEEEEEE-SSHH
T ss_pred EecCccc--CCCCCCCEEEECCCCC-cch-h------h---cccEEEEEecCCHH
Confidence 9987643 1233368899887543 221 1 1 12466777777654
No 488
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=84.48 E-value=0.36 Score=47.82 Aligned_cols=117 Identities=21% Similarity=0.278 Sum_probs=51.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHc
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~ 141 (786)
++++.|+.|+|||.. +.-+++.+.... -....++..+.+ +-+...++.+..+..|.... +....
T Consensus 1 ~i~iTG~pG~GKTTl-l~k~i~~l~~~~--~~v~Gf~t~evr-----------~~g~r~GF~iv~l~~g~~~~--la~~~ 64 (168)
T PF03266_consen 1 HIFITGPPGVGKTTL-LKKVIEELKKKG--LPVGGFYTEEVR-----------ENGRRIGFDIVDLNSGEEAI--LARVD 64 (168)
T ss_dssp EEEEES-TTSSHHHH-HHHHHHHHHHTC--GGEEEEEEEEEE-----------TTSSEEEEEEEET-TS-EEE--EEETT
T ss_pred CEEEECcCCCCHHHH-HHHHHHHhhccC--CccceEEeeccc-----------CCCceEEEEEEECcCCCccc--ccccc
Confidence 478999999999976 445666664321 122233333322 11222334444332222110 00000
Q ss_pred CCCCEEEECcHHHHHHHhhc--cCCC--CCceeeEEeCCccccc--cCChHHHHHHHHh
Q 003924 142 QNPDIIIATPGRLMHHLSEV--EDMS--LKSVEYVVFDEADCLF--GMGFAEQLHKILG 194 (786)
Q Consensus 142 ~~~dIiV~Tpgrll~~l~~~--~~l~--l~~l~~vV~DEah~l~--~~gf~~~l~~Il~ 194 (786)
....+-++.+.-....+... ..+. +...+++|+||+=.|- ..+|...+..++.
T Consensus 65 ~~~~~~vgky~v~~e~fe~~~~~~L~~~~~~~~liviDEIG~mEl~~~~F~~~v~~~l~ 123 (168)
T PF03266_consen 65 FRSGPRVGKYFVDLESFEEIGLPALRNALSSSDLIVIDEIGKMELKSPGFREAVEKLLD 123 (168)
T ss_dssp SS-SCECTTCEE-HHHHHCCCCCCCHHHHHCCHEEEE---STTCCC-CHHHHHHHHHHC
T ss_pred ccccccCCCEEEcHHHHHHHHHHHHHhhcCCCCEEEEeccchhhhcCHHHHHHHHHHHc
Confidence 11223333333222222221 1122 2466899999998654 4568888877776
No 489
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=84.45 E-value=3.3 Score=49.84 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=51.7
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHc-----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEec-----cccc-ccCCCC
Q 003924 266 DQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-----VAAR-GIDIPL 334 (786)
Q Consensus 266 ~~k~IVF~~t~~~ae~l~~~L~~~-----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTd-----v~ar-GlDIp~ 334 (786)
..++||.|+|+.-+..++..+... ++.+..+||+.+...+...+ .....|+|+|+ .+.+ .+++..
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchhh
Confidence 457999999999999887776543 67888999998766544332 24578999994 3333 367888
Q ss_pred cceeEe
Q 003924 335 LDNVIN 340 (786)
Q Consensus 335 v~~VI~ 340 (786)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 888873
No 490
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=84.44 E-value=12 Score=40.23 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=22.9
Q ss_pred chhhHHHHHHHHHHcCCCceeecCCCC
Q 003924 275 TKHHVEFLNVLFREEGLEPSVCYGDMD 301 (786)
Q Consensus 275 t~~~ae~l~~~L~~~g~~v~~lhg~l~ 301 (786)
++..|+.+++.|...++.+.+.|-++.
T Consensus 256 SV~iae~La~~L~~~~~~v~v~HRdl~ 282 (284)
T PF03668_consen 256 SVAIAERLAERLREKGYTVVVRHRDLE 282 (284)
T ss_pred HHHHHHHHHHHHHhcCCcceEEcCCCC
Confidence 466789999999999999998897765
No 491
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=84.39 E-value=2.1 Score=47.61 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-+++.||.|+|||+..
T Consensus 150 gllL~GPPGcGKTllA 165 (413)
T PLN00020 150 ILGIWGGKGQGKSFQC 165 (413)
T ss_pred EEEeeCCCCCCHHHHH
Confidence 4888999999999853
No 492
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=84.33 E-value=5 Score=43.93 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=26.8
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEecc
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SAT 208 (786)
.....++|||+||.|... ....+..++..-| ...+||.|..
T Consensus 122 ~~~~kVvII~~ae~m~~~-aaNaLLK~LEEPp-~~~fILi~~~ 162 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEA-AANALLKTLEEPG-NGTLILIAPS 162 (314)
T ss_pred cCCceEEEEEchhhcCHH-HHHHHHHHHhCCC-CCeEEEEECC
Confidence 356889999999998653 3455666666655 5545554443
No 493
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=84.29 E-value=4.8 Score=40.39 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=40.7
Q ss_pred CCceeeEEeCCccccccCCh--HHHHHHHHhhcccCCceEEEeccCcHHHHHHHHh
Q 003924 166 LKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf--~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (786)
-..+++||+||.--.+..|+ .+.+..++..-|...-+|+..-..|+.+.+.+..
T Consensus 120 ~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~ADl 175 (198)
T COG2109 120 DGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGAPPELIELADL 175 (198)
T ss_pred CCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHHH
Confidence 34689999999998877664 4677777777776666666666678888887765
No 494
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=84.28 E-value=1.7 Score=50.77 Aligned_cols=17 Identities=29% Similarity=0.407 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 003924 61 ADVVAMARTGSGKTAAF 77 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~af 77 (786)
+.+++.||+|+|||+..
T Consensus 89 ~giLL~GppGtGKT~la 105 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLA 105 (495)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 56999999999999853
No 495
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.09 E-value=3.7 Score=47.56 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=56.6
Q ss_pred CCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCC
Q 003924 91 QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSL 166 (786)
Q Consensus 91 ~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l 166 (786)
..+.++||.|-|+.-|.++...+...+ +.+.+++|..+..+....| .+.+.|+|||.= .- ..|++
T Consensus 339 ~~~~KvIIFc~tkr~~~~l~~~l~~~~----~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdV-----Aa--RGLDi 407 (519)
T KOG0331|consen 339 DSEGKVIIFCETKRTCDELARNLRRKG----WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDV-----AA--RGLDV 407 (519)
T ss_pred cCCCcEEEEecchhhHHHHHHHHHhcC----cceeeecccccHHHHHHHHHhcccCCcceEEEccc-----cc--ccCCC
Confidence 356689999999999999888777644 7899999988877665555 357899999952 22 37888
Q ss_pred CceeeEEe
Q 003924 167 KSVEYVVF 174 (786)
Q Consensus 167 ~~l~~vV~ 174 (786)
.+|++||-
T Consensus 408 ~dV~lVIn 415 (519)
T KOG0331|consen 408 PDVDLVIN 415 (519)
T ss_pred ccccEEEe
Confidence 88888874
No 496
>PRK09354 recA recombinase A; Provisional
Probab=83.96 E-value=6.4 Score=43.61 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=34.8
Q ss_pred HHHHHHc------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHH
Q 003924 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (786)
Q Consensus 53 aip~il~------g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~ 107 (786)
.+..+|. |+-+.+.||+|||||...+..+.+... .+..++||.....+-.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~-----~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-----AGGTAAFIDAEHALDP 102 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEECCccchHH
Confidence 4455555 355889999999999877655555443 3667888887766654
No 497
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=83.94 E-value=1.6 Score=46.75 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=30.6
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEecc
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SAT 208 (786)
+.+-+++|+||.-.-++......+..++..+...+ ++++.+.
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~-tii~isH 195 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADC-TVILSEH 195 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCC-EEEEEEC
Confidence 45667999999998888887888888887765444 4444444
No 498
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=83.88 E-value=2.4 Score=46.60 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
..+++.||+|+|||....
T Consensus 52 ~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CcEEEECCCCccHHHHHH
Confidence 469999999999998654
No 499
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=83.76 E-value=25 Score=38.00 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=20.2
Q ss_pred chhhHHHHHHHHHHcCCCceeecCCCC
Q 003924 275 TKHHVEFLNVLFREEGLEPSVCYGDMD 301 (786)
Q Consensus 275 t~~~ae~l~~~L~~~g~~v~~lhg~l~ 301 (786)
++..|+.+++.|. .++.+...|-++.
T Consensus 259 SV~~~e~l~~~l~-~~~~v~~~Hrd~~ 284 (288)
T PRK05416 259 SVAIAERLAERLS-KGYNVQVRHRDLE 284 (288)
T ss_pred HHHHHHHHHHHHh-CCCcEEEEeCccc
Confidence 4566888888884 6889999998775
No 500
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=83.66 E-value=4.6 Score=48.86 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=24.5
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCcH
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~ 211 (786)
.....++||||||.|... ....|...+..-|... +++|.+|-+.
T Consensus 116 ~g~~KV~IIDEa~~LT~~-A~NALLKtLEEPP~~t-ifILaTte~~ 159 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKS-AFNALLKTLEEPPKHV-IFILATTEVH 159 (725)
T ss_pred cCCCEEEEEEChhhCCHH-HHHHHHHHhhcCCCce-EEEEEcCChh
Confidence 356789999999987643 2333444444433333 3344445443
Done!