Query 003924
Match_columns 786
No_of_seqs 466 out of 3188
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 08:27:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003924.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003924hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 6.3E-61 2.2E-65 543.4 43.1 368 22-393 55-428 (434)
2 2j0s_A ATP-dependent RNA helic 100.0 2.5E-57 8.4E-62 508.1 39.6 368 22-394 36-404 (410)
3 2i4i_A ATP-dependent RNA helic 100.0 4.1E-57 1.4E-61 506.8 41.0 370 21-392 13-402 (417)
4 1s2m_A Putative ATP-dependent 100.0 4.8E-55 1.6E-59 487.6 42.1 369 20-394 18-386 (400)
5 3eiq_A Eukaryotic initiation f 100.0 1.9E-55 6.4E-60 492.5 35.9 369 22-395 39-409 (414)
6 1xti_A Probable ATP-dependent 100.0 5.6E-54 1.9E-58 476.8 40.6 370 21-395 6-380 (391)
7 3fht_A ATP-dependent RNA helic 100.0 6.2E-54 2.1E-58 479.4 40.7 367 21-394 23-401 (412)
8 1hv8_A Putative ATP-dependent 100.0 1.6E-53 5.6E-58 467.8 41.3 360 21-392 4-364 (367)
9 3pey_A ATP-dependent RNA helic 100.0 3.6E-53 1.2E-57 469.7 42.5 363 22-393 4-378 (395)
10 3sqw_A ATP-dependent RNA helic 100.0 1.1E-53 3.8E-58 501.2 37.6 370 21-390 15-415 (579)
11 3fmp_B ATP-dependent RNA helic 100.0 3.7E-55 1.3E-59 501.8 19.3 365 22-393 91-467 (479)
12 3i5x_A ATP-dependent RNA helic 100.0 5.7E-53 1.9E-57 493.1 37.4 368 23-390 68-466 (563)
13 1fuu_A Yeast initiation factor 100.0 1.3E-54 4.4E-59 482.1 21.6 367 21-393 19-386 (394)
14 2z0m_A 337AA long hypothetical 100.0 2.3E-50 7.8E-55 437.9 35.3 335 30-386 1-335 (337)
15 3fho_A ATP-dependent RNA helic 100.0 1.4E-49 4.7E-54 459.2 21.0 363 24-395 120-493 (508)
16 3oiy_A Reverse gyrase helicase 100.0 2.4E-48 8.2E-53 436.7 27.1 325 34-386 10-376 (414)
17 2v1x_A ATP-dependent DNA helic 100.0 1.8E-47 6.2E-52 447.6 35.2 342 24-381 22-382 (591)
18 1oyw_A RECQ helicase, ATP-depe 100.0 3.1E-47 1.1E-51 440.6 34.3 338 23-381 2-351 (523)
19 1tf5_A Preprotein translocase 100.0 3.2E-46 1.1E-50 439.3 31.4 323 40-374 79-546 (844)
20 4a2p_A RIG-I, retinoic acid in 100.0 3.4E-45 1.2E-49 425.0 26.7 333 41-376 3-511 (556)
21 4ddu_A Reverse gyrase; topoiso 100.0 2E-44 6.7E-49 447.1 30.1 321 40-386 74-503 (1104)
22 3tbk_A RIG-I helicase domain; 100.0 3.2E-44 1.1E-48 416.1 27.9 333 45-381 4-515 (555)
23 2ykg_A Probable ATP-dependent 100.0 3E-44 1E-48 429.7 27.1 343 35-380 3-523 (696)
24 2fsf_A Preprotein translocase 100.0 2.3E-44 8E-49 422.2 24.6 342 20-375 47-585 (853)
25 2va8_A SSO2462, SKI2-type heli 100.0 4.4E-43 1.5E-47 421.1 33.9 337 22-374 7-409 (715)
26 2zj8_A DNA helicase, putative 100.0 7.3E-44 2.5E-48 428.2 26.2 334 24-376 2-390 (720)
27 3l9o_A ATP-dependent RNA helic 100.0 1.1E-43 3.8E-48 440.4 28.5 338 23-381 162-606 (1108)
28 1nkt_A Preprotein translocase 100.0 2.8E-43 9.6E-48 413.3 29.1 324 40-375 107-619 (922)
29 4a2q_A RIG-I, retinoic acid in 100.0 4.4E-43 1.5E-47 425.7 31.0 335 40-377 243-753 (797)
30 1gku_B Reverse gyrase, TOP-RG; 100.0 9.2E-44 3.1E-48 441.0 23.0 337 23-387 30-468 (1054)
31 2p6r_A Afuhel308 helicase; pro 100.0 1.5E-43 5E-48 424.4 22.6 333 24-376 2-391 (702)
32 1wp9_A ATP-dependent RNA helic 100.0 1.1E-41 3.7E-46 385.8 34.3 324 45-376 9-478 (494)
33 4a2w_A RIG-I, retinoic acid in 100.0 8.4E-42 2.9E-46 419.8 28.1 335 39-376 242-752 (936)
34 2xgj_A ATP-dependent RNA helic 100.0 1.3E-40 4.6E-45 409.6 36.1 322 38-381 80-508 (1010)
35 1gm5_A RECG; helicase, replica 100.0 3.8E-41 1.3E-45 402.9 23.1 323 32-376 356-700 (780)
36 4gl2_A Interferon-induced heli 100.0 1.9E-41 6.7E-46 405.5 17.5 324 45-373 7-518 (699)
37 2eyq_A TRCF, transcription-rep 100.0 1E-38 3.6E-43 398.1 39.4 325 27-374 585-923 (1151)
38 2whx_A Serine protease/ntpase/ 100.0 7.1E-42 2.4E-46 401.7 8.0 317 25-385 151-493 (618)
39 4a4z_A Antiviral helicase SKI2 100.0 2.6E-39 8.9E-44 398.1 29.4 321 40-381 35-502 (997)
40 2oca_A DAR protein, ATP-depend 100.0 4.9E-40 1.7E-44 379.2 21.3 313 44-371 112-453 (510)
41 2jlq_A Serine protease subunit 100.0 2.1E-40 7.2E-45 376.8 13.5 287 42-372 1-310 (451)
42 2xau_A PRE-mRNA-splicing facto 100.0 6.9E-39 2.4E-43 385.2 25.9 336 21-375 70-445 (773)
43 4f92_B U5 small nuclear ribonu 100.0 8.1E-38 2.8E-42 400.7 34.7 347 30-389 911-1321(1724)
44 2fwr_A DNA repair protein RAD2 100.0 3.1E-38 1.1E-42 360.7 19.0 292 45-373 93-454 (472)
45 4f92_B U5 small nuclear ribonu 100.0 6.7E-37 2.3E-41 392.2 31.0 334 42-381 76-481 (1724)
46 1yks_A Genome polyprotein [con 100.0 1.8E-39 6.2E-44 367.9 3.4 280 56-385 4-314 (440)
47 2wv9_A Flavivirin protease NS2 100.0 4.6E-39 1.6E-43 380.3 5.9 306 37-385 202-548 (673)
48 3o8b_A HCV NS3 protease/helica 100.0 1.7E-38 6E-43 370.8 9.7 279 45-377 217-518 (666)
49 2z83_A Helicase/nucleoside tri 100.0 1.1E-37 3.8E-42 355.2 9.5 272 55-373 16-313 (459)
50 3fe2_A Probable ATP-dependent 100.0 1E-35 3.5E-40 310.1 23.2 211 21-232 27-240 (242)
51 1vec_A ATP-dependent RNA helic 100.0 9.9E-35 3.4E-39 294.1 24.2 203 22-227 2-205 (206)
52 2v6i_A RNA helicase; membrane, 100.0 1E-35 3.5E-40 336.3 18.6 269 59-370 1-288 (431)
53 3fmo_B ATP-dependent RNA helic 100.0 2.7E-35 9.4E-40 317.1 21.0 205 22-231 91-299 (300)
54 3ber_A Probable ATP-dependent 100.0 1E-34 3.5E-39 304.2 24.2 207 22-230 42-248 (249)
55 1wrb_A DJVLGB; RNA helicase, D 100.0 4.6E-35 1.6E-39 306.9 19.1 219 22-241 22-251 (253)
56 3h1t_A Type I site-specific re 100.0 5.5E-35 1.9E-39 343.3 21.3 301 45-362 178-545 (590)
57 3iuy_A Probable ATP-dependent 100.0 1.4E-34 4.6E-39 298.4 20.9 206 21-228 17-227 (228)
58 2pl3_A Probable ATP-dependent 100.0 4E-34 1.4E-38 296.4 24.2 208 22-230 24-233 (236)
59 1q0u_A Bstdead; DEAD protein, 100.0 1.3E-34 4.4E-39 296.8 19.1 205 23-230 4-212 (219)
60 3bor_A Human initiation factor 100.0 1.8E-34 6.1E-39 299.8 20.4 207 21-230 28-235 (237)
61 2oxc_A Probable ATP-dependent 100.0 4.8E-34 1.6E-38 295.1 23.4 206 21-230 22-229 (230)
62 3ly5_A ATP-dependent RNA helic 100.0 3.1E-34 1.1E-38 302.8 21.6 205 22-226 51-259 (262)
63 3rc3_A ATP-dependent RNA helic 100.0 5.4E-34 1.9E-38 336.3 22.9 312 31-390 130-461 (677)
64 2gxq_A Heat resistant RNA depe 100.0 1.5E-33 5E-38 285.5 22.8 204 24-230 2-206 (207)
65 1qde_A EIF4A, translation init 100.0 1.4E-33 4.9E-38 289.6 21.5 208 21-232 12-219 (224)
66 3dmq_A RNA polymerase-associat 100.0 3.6E-33 1.2E-37 343.8 28.2 318 45-372 153-612 (968)
67 3jux_A Protein translocase sub 100.0 8.5E-32 2.9E-36 310.0 37.0 320 41-374 72-588 (822)
68 1t6n_A Probable ATP-dependent 100.0 3E-33 1E-37 286.5 21.3 205 21-228 12-219 (220)
69 1z63_A Helicase of the SNF2/RA 100.0 1.6E-32 5.6E-37 315.5 24.6 312 45-375 37-455 (500)
70 3dkp_A Probable ATP-dependent 100.0 7.6E-33 2.6E-37 288.5 17.3 210 22-232 24-243 (245)
71 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 9.7E-32 3.3E-36 329.4 25.2 314 44-372 270-708 (1038)
72 3mwy_W Chromo domain-containin 100.0 5.6E-29 1.9E-33 301.7 29.2 319 45-374 236-685 (800)
73 1z3i_X Similar to RAD54-like; 100.0 3E-28 1E-32 288.5 34.6 322 45-374 55-529 (644)
74 2ipc_A Preprotein translocase 100.0 1.1E-27 3.7E-32 280.4 35.7 319 41-374 76-699 (997)
75 1c4o_A DNA nucleotide excision 100.0 2.4E-27 8.1E-32 281.0 26.5 176 198-382 379-559 (664)
76 2d7d_A Uvrabc system protein B 99.9 1.9E-26 6.4E-31 273.2 25.2 174 198-382 385-565 (661)
77 2p6n_A ATP-dependent RNA helic 99.9 2.3E-26 7.9E-31 231.1 16.6 174 217-393 8-182 (191)
78 2hjv_A ATP-dependent RNA helic 99.9 8.1E-26 2.8E-30 221.1 19.9 155 235-391 6-160 (163)
79 2rb4_A ATP-dependent RNA helic 99.9 3.2E-25 1.1E-29 219.3 17.7 156 236-393 5-167 (175)
80 1t5i_A C_terminal domain of A 99.9 2.8E-25 9.4E-30 219.4 17.2 157 237-395 4-161 (172)
81 3eaq_A Heat resistant RNA depe 99.9 2.3E-24 7.9E-29 220.1 24.2 159 239-399 6-166 (212)
82 1fuk_A Eukaryotic initiation f 99.9 3.2E-25 1.1E-29 217.1 16.3 155 238-394 3-158 (165)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 4.6E-25 1.6E-29 220.5 16.4 161 232-393 13-173 (185)
84 3i32_A Heat resistant RNA depe 99.9 7.1E-24 2.4E-28 227.4 23.1 159 239-399 3-163 (300)
85 3b6e_A Interferon-induced heli 99.9 2.4E-23 8.3E-28 211.1 13.5 168 40-208 28-216 (216)
86 2yjt_D ATP-dependent RNA helic 99.8 6E-25 2.1E-29 216.4 0.0 151 238-390 3-154 (170)
87 2vl7_A XPD; helicase, unknown 99.9 5.3E-22 1.8E-26 230.3 23.5 305 41-373 4-521 (540)
88 3llm_A ATP-dependent RNA helic 99.9 2.9E-22 9.9E-27 207.6 15.2 180 33-224 49-231 (235)
89 3crv_A XPD/RAD3 related DNA he 99.9 1.4E-20 4.9E-25 218.8 29.0 313 42-373 1-531 (551)
90 1rif_A DAR protein, DNA helica 99.8 2.6E-21 9E-26 205.8 12.0 153 45-212 113-265 (282)
91 4a15_A XPD helicase, ATP-depen 99.8 8.4E-18 2.9E-22 197.6 22.2 317 45-373 3-584 (620)
92 2fz4_A DNA repair protein RAD2 99.8 4.4E-18 1.5E-22 176.5 16.4 138 45-212 93-231 (237)
93 1z5z_A Helicase of the SNF2/RA 99.7 1.9E-17 6.5E-22 175.1 11.0 129 246-374 92-225 (271)
94 1w36_D RECD, exodeoxyribonucle 98.8 8.9E-09 3E-13 120.7 11.8 163 30-208 132-298 (608)
95 4b3f_X DNA-binding protein smu 98.2 2.2E-05 7.7E-10 92.6 18.8 67 45-116 189-256 (646)
96 2xzl_A ATP-dependent helicase 98.1 0.00017 5.8E-09 86.9 23.6 70 43-116 358-427 (802)
97 2wjy_A Regulator of nonsense t 98.1 0.00026 8.9E-09 85.2 23.8 70 43-116 354-423 (800)
98 3upu_A ATP-dependent DNA helic 98.0 1.8E-05 6E-10 89.6 12.2 140 35-206 15-162 (459)
99 3e1s_A Exodeoxyribonuclease V, 98.0 1.5E-05 5.2E-10 92.5 11.0 122 45-206 189-313 (574)
100 3lfu_A DNA helicase II; SF1 he 98.0 0.00038 1.3E-08 81.8 23.2 71 44-117 8-78 (647)
101 2gk6_A Regulator of nonsense t 97.9 5.2E-05 1.8E-09 89.0 14.0 70 43-116 178-247 (624)
102 3hgt_A HDA1 complex subunit 3; 97.5 0.00048 1.6E-08 73.4 11.6 127 246-377 105-241 (328)
103 1uaa_A REP helicase, protein ( 97.2 0.017 5.7E-07 68.3 21.0 81 45-128 2-85 (673)
104 2o0j_A Terminase, DNA packagin 96.9 0.0072 2.5E-07 66.3 13.6 71 45-118 163-233 (385)
105 3cpe_A Terminase, DNA packagin 96.8 0.011 3.9E-07 68.7 14.6 73 45-120 163-235 (592)
106 3ec2_A DNA replication protein 96.7 0.0087 3E-07 57.9 11.0 32 47-78 16-56 (180)
107 2orw_A Thymidine kinase; TMTK, 96.5 0.015 5E-07 57.1 11.1 40 59-103 2-41 (184)
108 2b8t_A Thymidine kinase; deoxy 96.4 0.0061 2.1E-07 61.8 7.8 92 59-181 11-102 (223)
109 3vkw_A Replicase large subunit 96.3 0.0044 1.5E-07 69.0 6.7 107 62-208 163-269 (446)
110 1xx6_A Thymidine kinase; NESG, 96.2 0.012 4.2E-07 58.1 8.8 39 60-103 8-46 (191)
111 2kjq_A DNAA-related protein; s 96.0 0.0037 1.3E-07 59.2 3.8 41 168-209 83-124 (149)
112 3kl4_A SRP54, signal recogniti 95.5 0.04 1.4E-06 61.3 9.9 121 62-211 99-225 (433)
113 2j9r_A Thymidine kinase; TK1, 95.4 0.017 5.7E-07 58.0 5.8 39 60-103 28-66 (214)
114 3te6_A Regulatory protein SIR3 95.3 0.16 5.6E-06 54.0 13.5 27 60-87 45-71 (318)
115 1l8q_A Chromosomal replication 95.2 0.068 2.3E-06 56.8 10.4 17 61-77 38-54 (324)
116 1d2n_A N-ethylmaleimide-sensit 94.9 0.084 2.9E-06 54.5 9.9 18 61-78 65-82 (272)
117 2qby_B CDC6 homolog 3, cell di 94.6 0.14 4.9E-06 55.2 11.0 17 61-77 46-62 (384)
118 2z4s_A Chromosomal replication 94.5 0.13 4.4E-06 57.4 10.7 43 168-210 194-238 (440)
119 2orv_A Thymidine kinase; TP4A 94.4 0.059 2E-06 54.6 6.8 40 59-103 18-57 (234)
120 3bos_A Putative DNA replicatio 94.4 0.082 2.8E-06 52.7 8.0 18 60-77 52-69 (242)
121 1pjr_A PCRA; DNA repair, DNA r 94.4 0.067 2.3E-06 63.7 8.4 70 44-116 10-79 (724)
122 3n70_A Transport activator; si 94.4 0.12 4.2E-06 48.0 8.6 40 170-210 78-117 (145)
123 2p65_A Hypothetical protein PF 94.3 0.16 5.3E-06 48.3 9.5 19 60-78 43-61 (187)
124 3dm5_A SRP54, signal recogniti 94.2 0.065 2.2E-06 59.7 7.3 120 62-210 102-225 (443)
125 2w58_A DNAI, primosome compone 94.2 0.24 8.1E-06 48.4 10.8 18 61-78 55-72 (202)
126 2v1u_A Cell division control p 94.2 0.15 5.3E-06 54.7 10.3 29 168-196 130-159 (387)
127 3u4q_A ATP-dependent helicase/ 94.1 0.061 2.1E-06 67.9 7.5 69 45-115 10-79 (1232)
128 1jbk_A CLPB protein; beta barr 94.1 0.15 5.1E-06 48.5 8.7 17 61-77 44-60 (195)
129 3syl_A Protein CBBX; photosynt 94.0 0.046 1.6E-06 57.4 5.2 18 61-78 68-85 (309)
130 3u61_B DNA polymerase accessor 93.9 0.094 3.2E-06 55.6 7.6 41 167-207 104-144 (324)
131 3h4m_A Proteasome-activating n 93.9 0.024 8.1E-07 59.0 2.7 54 21-77 12-68 (285)
132 2chg_A Replication factor C sm 93.9 0.45 1.5E-05 46.3 12.0 40 167-207 101-140 (226)
133 1fnn_A CDC6P, cell division co 93.8 0.11 3.9E-06 56.0 8.3 16 62-77 46-61 (389)
134 1gm5_A RECG; helicase, replica 93.7 0.13 4.4E-06 61.6 9.1 80 263-342 414-498 (780)
135 1a5t_A Delta prime, HOLB; zinc 93.7 0.12 4.1E-06 55.4 8.0 33 46-78 3-42 (334)
136 2qgz_A Helicase loader, putati 93.6 0.19 6.3E-06 53.3 9.2 19 60-78 152-170 (308)
137 2zpa_A Uncharacterized protein 93.6 0.074 2.5E-06 62.1 6.5 112 45-209 175-288 (671)
138 1w4r_A Thymidine kinase; type 93.5 0.057 2E-06 53.3 4.6 39 59-102 19-57 (195)
139 3eie_A Vacuolar protein sortin 93.5 0.25 8.6E-06 52.4 10.0 52 21-78 13-69 (322)
140 3e2i_A Thymidine kinase; Zn-bi 93.3 0.096 3.3E-06 52.5 5.9 98 60-193 28-125 (219)
141 1g5t_A COB(I)alamin adenosyltr 93.3 0.66 2.3E-05 45.7 11.9 131 61-218 29-172 (196)
142 1xwi_A SKD1 protein; VPS4B, AA 93.3 0.4 1.4E-05 51.0 11.2 51 22-78 8-63 (322)
143 4b4t_M 26S protease regulatory 93.2 0.034 1.2E-06 61.9 2.7 54 21-77 176-232 (434)
144 3vfd_A Spastin; ATPase, microt 92.9 0.24 8.3E-06 54.1 9.1 19 60-78 148-166 (389)
145 2q6t_A DNAB replication FORK h 92.9 0.23 7.8E-06 55.4 8.9 38 61-102 201-238 (444)
146 1sxj_E Activator 1 40 kDa subu 92.7 0.22 7.5E-06 53.2 8.1 42 167-209 133-174 (354)
147 2qby_A CDC6 homolog 1, cell di 92.5 0.57 1.9E-05 50.1 11.3 18 60-77 45-62 (386)
148 2r6a_A DNAB helicase, replicat 92.5 0.31 1.1E-05 54.5 9.3 39 60-102 203-241 (454)
149 3co5_A Putative two-component 92.5 0.087 3E-06 49.0 4.0 21 57-77 24-44 (143)
150 3b9p_A CG5977-PA, isoform A; A 92.5 0.36 1.2E-05 50.2 9.3 51 22-78 17-72 (297)
151 2r2a_A Uncharacterized protein 92.4 0.05 1.7E-06 54.0 2.3 18 63-80 8-25 (199)
152 4b4t_J 26S protease regulatory 92.1 0.11 3.8E-06 57.1 4.8 53 22-77 144-199 (405)
153 3oiy_A Reverse gyrase helicase 92.1 0.42 1.5E-05 52.2 9.7 62 264-325 62-126 (414)
154 2w0m_A SSO2452; RECA, SSPF, un 92.1 0.69 2.4E-05 45.6 10.4 21 59-79 22-42 (235)
155 3pfi_A Holliday junction ATP-d 91.7 0.43 1.5E-05 50.6 8.9 45 22-78 25-73 (338)
156 2dr3_A UPF0273 protein PH0284; 91.7 0.43 1.5E-05 47.8 8.5 50 59-114 22-71 (247)
157 4b4t_H 26S protease regulatory 91.6 0.095 3.2E-06 58.5 3.6 53 22-77 205-260 (467)
158 2bjv_A PSP operon transcriptio 91.5 0.65 2.2E-05 47.4 9.8 19 59-77 28-46 (265)
159 2hjv_A ATP-dependent RNA helic 91.3 1 3.6E-05 42.4 10.3 73 93-176 35-111 (163)
160 2qp9_X Vacuolar protein sortin 91.3 0.47 1.6E-05 51.1 8.8 18 61-78 85-102 (355)
161 1njg_A DNA polymerase III subu 91.2 1.7 5.9E-05 42.5 12.3 16 62-77 47-62 (250)
162 2qz4_A Paraplegin; AAA+, SPG7, 91.0 0.28 9.7E-06 49.8 6.4 53 23-78 3-57 (262)
163 2p6n_A ATP-dependent RNA helic 91.0 1.1 3.6E-05 43.8 10.3 73 93-176 54-130 (191)
164 4b4t_L 26S protease subunit RP 91.0 0.16 5.4E-06 56.5 4.7 54 21-77 176-232 (437)
165 4b4t_K 26S protease regulatory 90.8 0.17 5.7E-06 56.2 4.6 54 21-77 167-223 (428)
166 3t15_A Ribulose bisphosphate c 90.7 0.22 7.4E-06 52.3 5.2 17 61-77 37-53 (293)
167 2zan_A Vacuolar protein sortin 90.6 0.4 1.4E-05 53.4 7.6 18 61-78 168-185 (444)
168 1iqp_A RFCS; clamp loader, ext 90.5 0.77 2.6E-05 48.0 9.4 39 167-206 109-147 (327)
169 1sxj_D Activator 1 41 kDa subu 90.5 0.29 9.8E-06 52.1 6.1 39 167-206 132-170 (353)
170 4b4t_I 26S protease regulatory 90.1 0.21 7.3E-06 55.1 4.6 54 21-77 177-233 (437)
171 3cf0_A Transitional endoplasmi 90.1 0.83 2.8E-05 47.9 9.1 54 22-78 11-67 (301)
172 2rb4_A ATP-dependent RNA helic 90.0 1.1 3.9E-05 42.6 9.3 72 93-175 34-109 (175)
173 1sxj_A Activator 1 95 kDa subu 89.9 0.8 2.7E-05 52.0 9.4 41 167-209 147-189 (516)
174 2ehv_A Hypothetical protein PH 89.7 0.75 2.6E-05 46.1 8.2 47 166-212 133-184 (251)
175 3pvs_A Replication-associated 89.7 0.32 1.1E-05 54.3 5.8 17 62-78 52-68 (447)
176 1sxj_B Activator 1 37 kDa subu 89.6 0.44 1.5E-05 49.8 6.5 38 168-206 107-144 (323)
177 1fuk_A Eukaryotic initiation f 89.4 1.7 5.9E-05 40.9 10.0 74 93-177 30-107 (165)
178 3d8b_A Fidgetin-like protein 1 89.4 0.26 8.9E-06 53.2 4.7 19 60-78 117-135 (357)
179 1jr3_A DNA polymerase III subu 89.2 1.1 3.8E-05 47.9 9.5 39 166-205 117-155 (373)
180 2gno_A DNA polymerase III, gam 89.2 0.83 2.8E-05 48.2 8.2 39 166-205 80-118 (305)
181 4a1f_A DNAB helicase, replicat 89.2 0.45 1.5E-05 51.1 6.2 39 59-102 45-83 (338)
182 3eaq_A Heat resistant RNA depe 89.1 1.7 6E-05 42.9 10.2 71 93-174 31-105 (212)
183 1w5s_A Origin recognition comp 88.5 2.5 8.6E-05 45.6 11.9 18 61-78 51-70 (412)
184 3hjh_A Transcription-repair-co 88.0 1.6 5.6E-05 49.0 10.1 88 59-157 13-116 (483)
185 3bh0_A DNAB-like replicative h 88.0 1.2 4E-05 47.2 8.5 38 60-102 68-105 (315)
186 1n0w_A DNA repair protein RAD5 87.7 2.9 0.0001 41.4 10.9 23 60-82 24-46 (243)
187 2eyq_A TRCF, transcription-rep 87.6 1.2 4E-05 55.8 9.4 78 263-340 649-731 (1151)
188 1lv7_A FTSH; alpha/beta domain 87.5 0.8 2.7E-05 46.5 6.6 54 21-77 7-62 (257)
189 1sxj_C Activator 1 40 kDa subu 87.5 1.3 4.5E-05 47.1 8.6 39 167-206 109-147 (340)
190 4ddu_A Reverse gyrase; topoiso 87.5 1 3.6E-05 55.9 8.8 91 250-340 105-202 (1104)
191 1t5i_A C_terminal domain of A 87.5 1.9 6.6E-05 41.0 9.0 74 93-177 31-108 (172)
192 2l8b_A Protein TRAI, DNA helic 87.5 0.8 2.7E-05 44.5 6.0 137 46-224 35-178 (189)
193 3cf2_A TER ATPase, transitiona 87.4 0.24 8.4E-06 59.2 2.9 52 23-77 474-528 (806)
194 1hqc_A RUVB; extended AAA-ATPa 86.9 1.3 4.3E-05 46.5 8.0 18 61-78 39-56 (324)
195 1ls1_A Signal recognition part 86.8 3.3 0.00011 43.2 11.1 46 167-212 179-225 (295)
196 2cvh_A DNA repair and recombin 86.8 1.4 4.8E-05 43.1 7.7 33 60-100 20-52 (220)
197 3hu3_A Transitional endoplasmi 86.6 1.7 5.7E-05 49.1 9.1 42 169-210 298-349 (489)
198 1t6n_A Probable ATP-dependent 86.5 3.2 0.00011 40.7 10.2 70 267-339 83-163 (220)
199 2zts_A Putative uncharacterize 86.4 0.48 1.7E-05 47.5 4.2 38 60-101 30-67 (251)
200 2ce7_A Cell division protein F 86.1 0.93 3.2E-05 51.0 6.6 54 21-77 11-66 (476)
201 1cr0_A DNA primase/helicase; R 86.0 3.8 0.00013 42.4 11.1 39 59-101 34-72 (296)
202 3cmu_A Protein RECA, recombina 85.9 0.96 3.3E-05 59.0 7.4 45 54-103 1415-1465(2050)
203 2px0_A Flagellar biosynthesis 85.5 2.1 7E-05 44.9 8.6 19 60-78 105-123 (296)
204 3cf2_A TER ATPase, transitiona 85.5 0.61 2.1E-05 55.8 5.0 42 168-209 297-348 (806)
205 1qvr_A CLPB protein; coiled co 85.2 1.8 6.1E-05 52.4 9.0 18 61-78 192-209 (854)
206 1ojl_A Transcriptional regulat 85.1 0.88 3E-05 47.9 5.6 19 59-77 24-42 (304)
207 3i5x_A ATP-dependent RNA helic 84.9 6.2 0.00021 44.7 13.1 96 71-176 319-418 (563)
208 3bgw_A DNAB-like replicative h 84.7 1.2 4.1E-05 49.6 6.7 38 60-102 197-234 (444)
209 3k1j_A LON protease, ATP-depen 84.3 5.2 0.00018 46.2 12.1 24 54-77 54-77 (604)
210 2chq_A Replication factor C sm 84.3 0.31 1.1E-05 50.8 1.6 43 23-78 14-56 (319)
211 2i4i_A ATP-dependent RNA helic 83.7 3.9 0.00013 44.2 10.2 72 92-174 275-350 (417)
212 1nlf_A Regulatory protein REPA 83.7 3.6 0.00012 42.2 9.5 26 57-82 27-52 (279)
213 2z43_A DNA repair and recombin 83.7 3.3 0.00011 43.8 9.3 56 61-116 108-165 (324)
214 1r6b_X CLPA protein; AAA+, N-t 83.5 1.9 6.4E-05 51.4 8.1 19 60-78 207-225 (758)
215 2fna_A Conserved hypothetical 83.3 27 0.00091 36.2 16.4 39 169-209 138-179 (357)
216 3bor_A Human initiation factor 83.2 3.1 0.00011 41.6 8.5 88 249-339 78-178 (237)
217 3sqw_A ATP-dependent RNA helic 82.8 8.5 0.00029 44.0 13.1 78 92-177 287-368 (579)
218 3fe2_A Probable ATP-dependent 82.7 3.3 0.00011 41.4 8.5 71 265-339 101-181 (242)
219 3iuy_A Probable ATP-dependent 82.2 3 0.0001 41.2 7.9 71 265-339 93-172 (228)
220 2zr9_A Protein RECA, recombina 81.9 3.3 0.00011 44.5 8.5 45 53-102 48-98 (349)
221 2i1q_A DNA repair and recombin 81.7 3.1 0.00011 43.8 8.1 56 61-116 99-166 (322)
222 1q57_A DNA primase/helicase; d 81.6 2.8 9.5E-05 47.3 8.2 40 59-102 241-280 (503)
223 1xp8_A RECA protein, recombina 81.5 4.2 0.00014 44.0 9.2 46 53-103 61-112 (366)
224 3i32_A Heat resistant RNA depe 81.4 3.9 0.00013 42.9 8.7 73 93-176 28-104 (300)
225 2jgn_A DBX, DDX3, ATP-dependen 81.2 2.5 8.5E-05 40.8 6.6 89 69-174 28-120 (185)
226 3hr8_A Protein RECA; alpha and 80.9 1.7 5.7E-05 47.0 5.7 46 53-103 48-99 (356)
227 3io5_A Recombination and repai 80.9 1.7 5.9E-05 46.1 5.6 91 62-181 30-124 (333)
228 3m6a_A ATP-dependent protease 80.5 2.4 8.4E-05 48.4 7.3 18 60-77 108-125 (543)
229 1hv8_A Putative ATP-dependent 80.4 4.5 0.00015 42.5 8.9 74 92-176 237-314 (367)
230 2ffh_A Protein (FFH); SRP54, s 80.3 5.4 0.00018 44.0 9.7 17 62-78 100-116 (425)
231 3fht_A ATP-dependent RNA helic 80.0 4.5 0.00015 43.4 8.9 72 93-175 266-341 (412)
232 2gxq_A Heat resistant RNA depe 79.9 6.2 0.00021 37.9 9.2 71 265-339 71-149 (207)
233 3e70_C DPA, signal recognition 79.9 11 0.00038 39.9 11.8 52 168-219 211-263 (328)
234 2d7d_A Uvrabc system protein B 79.8 14 0.00049 43.0 13.7 78 92-180 444-525 (661)
235 2pl3_A Probable ATP-dependent 79.5 3.9 0.00013 40.6 7.7 55 265-324 96-154 (236)
236 1xti_A Probable ATP-dependent 79.4 4.7 0.00016 43.0 8.8 76 92-178 249-328 (391)
237 2oxc_A Probable ATP-dependent 79.2 4.9 0.00017 39.8 8.3 85 250-339 73-171 (230)
238 3ber_A Probable ATP-dependent 78.6 5.5 0.00019 40.2 8.5 70 266-339 111-191 (249)
239 3pey_A ATP-dependent RNA helic 78.6 5.8 0.0002 42.1 9.2 77 92-179 242-322 (395)
240 1wp9_A ATP-dependent RNA helic 78.4 8.9 0.00031 41.6 10.9 96 69-178 340-447 (494)
241 3lda_A DNA repair protein RAD5 78.4 7.3 0.00025 42.6 9.9 41 61-101 179-220 (400)
242 1oyw_A RECQ helicase, ATP-depe 78.3 3.2 0.00011 47.1 7.3 59 266-324 65-123 (523)
243 1c4o_A DNA nucleotide excision 78.2 35 0.0012 39.7 16.4 77 93-180 439-519 (664)
244 2db3_A ATP-dependent RNA helic 78.0 6 0.00021 43.5 9.3 69 95-174 302-374 (434)
245 2v1x_A ATP-dependent DNA helic 77.7 4.2 0.00014 46.9 8.2 59 266-324 84-144 (591)
246 1s2m_A Putative ATP-dependent 77.6 5.6 0.00019 42.6 8.7 73 93-176 258-334 (400)
247 1e9r_A Conjugal transfer prote 77.4 2 7E-05 47.3 5.2 44 59-107 52-95 (437)
248 2j0s_A ATP-dependent RNA helic 76.4 7.8 0.00027 41.6 9.5 73 93-176 276-352 (410)
249 3cmu_A Protein RECA, recombina 76.3 6.5 0.00022 51.4 9.9 117 59-209 1080-1217(2050)
250 3pxi_A Negative regulator of g 76.3 4.7 0.00016 47.9 8.3 142 62-262 523-678 (758)
251 1vec_A ATP-dependent RNA helic 75.6 7.6 0.00026 37.3 8.3 55 266-324 71-130 (206)
252 1yks_A Genome polyprotein [con 75.3 3 0.0001 46.2 5.9 69 93-174 177-246 (440)
253 2dhr_A FTSH; AAA+ protein, hex 75.2 3.2 0.00011 46.9 6.0 50 21-77 26-81 (499)
254 2xxa_A Signal recognition part 74.1 2.8 9.4E-05 46.5 5.1 42 62-107 102-145 (433)
255 3cmw_A Protein RECA, recombina 74.0 6.3 0.00022 50.8 8.9 119 61-212 1432-1570(1706)
256 2j37_W Signal recognition part 73.5 18 0.00063 40.7 11.8 35 62-101 103-137 (504)
257 1v5w_A DMC1, meiotic recombina 73.3 8.8 0.0003 40.8 8.7 43 61-103 123-166 (343)
258 1ypw_A Transitional endoplasmi 72.5 9.7 0.00033 45.6 9.7 18 60-77 238-255 (806)
259 2yhs_A FTSY, cell division pro 71.8 11 0.00038 42.3 9.3 16 62-77 295-310 (503)
260 1j8m_F SRP54, signal recogniti 71.7 13 0.00045 38.7 9.5 17 62-78 100-116 (297)
261 3tbk_A RIG-I helicase domain; 71.5 7.2 0.00025 43.6 8.0 95 70-174 369-476 (555)
262 2yjt_D ATP-dependent RNA helic 73.5 0.86 2.9E-05 43.3 0.0 73 93-176 30-106 (170)
263 3ly5_A ATP-dependent RNA helic 70.6 13 0.00044 37.7 9.0 71 265-339 125-206 (262)
264 1qde_A EIF4A, translation init 70.2 7 0.00024 38.2 6.6 85 250-339 63-160 (224)
265 1pzn_A RAD51, DNA repair and r 69.5 9.7 0.00033 40.7 8.0 22 24-45 36-58 (349)
266 2xau_A PRE-mRNA-splicing facto 68.8 20 0.00067 42.7 11.2 75 93-174 303-393 (773)
267 2v6i_A RNA helicase; membrane, 68.1 7.5 0.00026 42.8 6.9 67 93-172 171-238 (431)
268 2oca_A DAR protein, ATP-depend 67.8 34 0.0012 37.9 12.5 76 94-179 348-427 (510)
269 1wrb_A DJVLGB; RNA helicase, D 66.3 18 0.00061 36.1 8.9 70 266-339 100-179 (253)
270 3dmn_A Putative DNA helicase; 65.9 75 0.0026 29.8 12.8 115 210-343 8-123 (174)
271 3cmw_A Protein RECA, recombina 65.4 8.1 0.00028 49.8 7.2 38 60-102 34-71 (1706)
272 2wv9_A Flavivirin protease NS2 65.4 7.1 0.00024 45.8 6.3 68 93-173 410-478 (673)
273 1ofh_A ATP-dependent HSL prote 65.4 11 0.00038 38.6 7.2 19 60-78 50-68 (310)
274 2oap_1 GSPE-2, type II secreti 64.8 7.6 0.00026 43.9 6.2 40 35-76 236-276 (511)
275 3nwn_A Kinesin-like protein KI 64.8 4.5 0.00015 43.6 4.1 26 53-78 96-123 (359)
276 1gku_B Reverse gyrase, TOP-RG; 64.4 8.7 0.0003 47.5 7.1 82 257-340 90-181 (1054)
277 3b85_A Phosphate starvation-in 64.3 6.3 0.00021 38.9 4.8 35 43-77 5-39 (208)
278 1u0j_A DNA replication protein 64.2 12 0.00041 38.5 7.0 45 31-78 72-122 (267)
279 3dkp_A Probable ATP-dependent 63.4 4 0.00014 40.7 3.3 72 265-339 97-180 (245)
280 1bg2_A Kinesin; motor protein, 62.7 5.3 0.00018 42.4 4.1 25 54-78 70-96 (325)
281 3nbx_X ATPase RAVA; AAA+ ATPas 62.3 9.4 0.00032 43.0 6.3 37 41-77 22-58 (500)
282 1kgd_A CASK, peripheral plasma 62.0 4.1 0.00014 38.8 2.9 20 58-77 3-22 (180)
283 1v8k_A Kinesin-like protein KI 61.9 5.3 0.00018 43.8 4.1 25 54-78 147-173 (410)
284 3dc4_A Kinesin-like protein NO 61.7 5.3 0.00018 42.8 3.9 23 55-77 88-112 (344)
285 4etp_A Kinesin-like protein KA 61.4 5.3 0.00018 43.8 3.9 26 53-78 132-159 (403)
286 2ius_A DNA translocase FTSK; n 61.3 9.2 0.00031 43.2 6.0 42 60-102 167-208 (512)
287 1t5c_A CENP-E protein, centrom 61.3 5.1 0.00017 43.0 3.7 24 54-77 70-95 (349)
288 3gbj_A KIF13B protein; kinesin 61.1 5.1 0.00017 43.1 3.7 25 53-77 84-110 (354)
289 2y65_A Kinesin, kinesin heavy 60.7 5.9 0.0002 42.8 4.1 23 55-77 78-102 (365)
290 2jlq_A Serine protease subunit 60.6 10 0.00034 42.0 6.1 68 93-173 188-256 (451)
291 2zfi_A Kinesin-like protein KI 60.4 5.4 0.00019 43.1 3.8 24 54-77 82-107 (366)
292 3exa_A TRNA delta(2)-isopenten 60.4 4.1 0.00014 43.1 2.7 18 61-78 4-21 (322)
293 3b6u_A Kinesin-like protein KI 60.2 6 0.00021 42.8 4.1 24 54-77 94-119 (372)
294 2vvg_A Kinesin-2; motor protei 60.2 6.2 0.00021 42.4 4.1 23 55-77 83-107 (350)
295 1x88_A Kinesin-like protein KI 60.2 5.1 0.00018 43.1 3.5 25 54-78 81-107 (359)
296 2v3c_C SRP54, signal recogniti 60.1 7.2 0.00025 43.1 4.8 34 62-100 101-134 (432)
297 2ykg_A Probable ATP-dependent 60.0 8.7 0.0003 44.8 5.8 79 92-177 397-488 (696)
298 4a14_A Kinesin, kinesin-like p 60.0 6.2 0.00021 42.2 4.1 24 54-77 76-101 (344)
299 1tf7_A KAIC; homohexamer, hexa 60.0 26 0.00088 39.5 9.5 39 59-102 280-318 (525)
300 2nr8_A Kinesin-like protein KI 59.9 6.2 0.00021 42.5 4.1 25 53-77 95-121 (358)
301 3a8t_A Adenylate isopentenyltr 59.8 4.6 0.00016 43.1 3.0 18 61-78 41-58 (339)
302 2h58_A Kinesin-like protein KI 59.8 6.4 0.00022 41.9 4.1 25 53-77 72-98 (330)
303 3fmo_B ATP-dependent RNA helic 59.5 11 0.00036 39.3 5.8 81 253-340 147-241 (300)
304 4akg_A Glutathione S-transfera 59.4 13 0.00045 50.2 7.9 48 30-78 890-941 (2695)
305 2r44_A Uncharacterized protein 59.4 5.5 0.00019 41.8 3.6 27 51-77 37-63 (331)
306 4ag6_A VIRB4 ATPase, type IV s 59.4 6.6 0.00022 42.5 4.3 42 59-105 34-75 (392)
307 3cob_A Kinesin heavy chain-lik 59.2 4.9 0.00017 43.4 3.2 25 53-77 71-97 (369)
308 2wbe_C Bipolar kinesin KRP-130 59.1 5.6 0.00019 43.1 3.6 23 55-77 94-118 (373)
309 1goj_A Kinesin, kinesin heavy 59.0 6 0.00021 42.5 3.8 22 56-77 75-98 (355)
310 1p9r_A General secretion pathw 58.9 9.1 0.00031 42.1 5.3 28 49-76 154-183 (418)
311 3hws_A ATP-dependent CLP prote 58.9 12 0.0004 40.0 6.1 20 59-78 50-69 (363)
312 3tau_A Guanylate kinase, GMP k 58.7 5.6 0.00019 38.9 3.2 19 59-77 7-25 (208)
313 3p32_A Probable GTPase RV1496/ 58.3 45 0.0016 35.3 10.7 17 62-78 81-97 (355)
314 3u06_A Protein claret segregat 58.1 6.2 0.00021 43.3 3.8 25 53-77 130-156 (412)
315 1q0u_A Bstdead; DEAD protein, 58.1 9.6 0.00033 37.2 4.9 72 249-324 52-134 (219)
316 3lre_A Kinesin-like protein KI 58.0 6.4 0.00022 42.3 3.8 23 55-77 99-123 (355)
317 2iut_A DNA translocase FTSK; n 57.9 11 0.00039 42.9 6.0 42 61-103 215-256 (574)
318 2heh_A KIF2C protein; kinesin, 57.8 6.7 0.00023 42.7 3.9 25 54-78 127-153 (387)
319 2gza_A Type IV secretion syste 57.6 6.5 0.00022 42.3 3.8 20 57-76 172-191 (361)
320 3t0q_A AGR253WP; kinesin, alph 57.4 5.5 0.00019 42.7 3.1 26 53-78 77-104 (349)
321 3vaa_A Shikimate kinase, SK; s 57.4 4.9 0.00017 38.9 2.6 20 59-78 24-43 (199)
322 1qhx_A CPT, protein (chloramph 57.3 4.5 0.00015 38.0 2.2 18 60-77 3-20 (178)
323 2j41_A Guanylate kinase; GMP, 57.3 4.4 0.00015 39.0 2.2 20 58-77 4-23 (207)
324 2whx_A Serine protease/ntpase/ 57.3 15 0.00052 42.4 7.2 68 93-173 355-423 (618)
325 2eyu_A Twitching motility prot 57.1 5.1 0.00017 41.1 2.7 21 57-77 22-42 (261)
326 3lw7_A Adenylate kinase relate 57.0 4.7 0.00016 37.3 2.3 17 62-78 3-19 (179)
327 3foz_A TRNA delta(2)-isopenten 57.0 5.5 0.00019 42.0 3.0 17 62-78 12-28 (316)
328 3trf_A Shikimate kinase, SK; a 56.9 5.1 0.00017 38.0 2.6 19 60-78 5-23 (185)
329 2owm_A Nckin3-434, related to 56.8 6.7 0.00023 43.5 3.8 24 55-78 130-155 (443)
330 2qmh_A HPR kinase/phosphorylas 56.6 5 0.00017 39.6 2.4 19 60-78 34-52 (205)
331 1fuu_A Yeast initiation factor 56.6 38 0.0013 35.7 9.8 71 249-324 69-146 (394)
332 1vma_A Cell division protein F 56.6 48 0.0017 34.5 10.3 17 62-78 106-122 (306)
333 3bfn_A Kinesin-like protein KI 56.4 5.4 0.00019 43.4 2.9 32 46-77 75-116 (388)
334 1lvg_A Guanylate kinase, GMP k 56.2 6.5 0.00022 38.1 3.3 19 59-77 3-21 (198)
335 1f9v_A Kinesin-like protein KA 56.0 5.1 0.00017 43.0 2.6 25 54-78 77-103 (347)
336 2ze6_A Isopentenyl transferase 55.6 6.1 0.00021 40.1 3.0 16 62-77 3-18 (253)
337 3eiq_A Eukaryotic initiation f 55.5 27 0.00091 37.2 8.4 57 265-324 107-167 (414)
338 3a00_A Guanylate kinase, GMP k 55.5 5.8 0.0002 37.9 2.7 16 61-76 2-17 (186)
339 1kht_A Adenylate kinase; phosp 55.2 5.6 0.00019 37.7 2.5 19 59-77 2-20 (192)
340 3ney_A 55 kDa erythrocyte memb 55.1 6.3 0.00022 38.6 2.9 20 58-77 17-36 (197)
341 2pt7_A CAG-ALFA; ATPase, prote 55.1 6 0.00021 42.0 3.0 20 57-76 168-187 (330)
342 1tue_A Replication protein E1; 55.0 15 0.00053 36.3 5.6 44 33-78 29-76 (212)
343 3o8b_A HCV NS3 protease/helica 54.7 14 0.00049 43.0 6.3 66 93-173 396-461 (666)
344 4f4c_A Multidrug resistance pr 54.2 21 0.00072 45.2 8.2 42 166-207 1233-1274(1321)
345 3mwy_W Chromo domain-containin 54.0 56 0.0019 38.8 11.6 94 70-178 554-653 (800)
346 3iij_A Coilin-interacting nucl 54.0 3.9 0.00013 38.7 1.1 21 58-78 9-29 (180)
347 2x8a_A Nuclear valosin-contain 53.8 6.7 0.00023 40.3 3.0 52 22-76 6-60 (274)
348 3u4q_B ATP-dependent helicase/ 53.8 9.4 0.00032 47.7 4.9 39 63-103 4-42 (1166)
349 4gl2_A Interferon-induced heli 53.7 5.8 0.0002 46.3 2.8 75 93-174 400-488 (699)
350 3b5x_A Lipid A export ATP-bind 53.1 19 0.00067 41.1 7.1 42 166-208 496-537 (582)
351 1ex7_A Guanylate kinase; subst 53.0 6.8 0.00023 38.0 2.7 16 61-76 2-17 (186)
352 1zp6_A Hypothetical protein AT 52.8 5.4 0.00018 38.0 2.0 19 59-77 8-26 (191)
353 3tr0_A Guanylate kinase, GMP k 52.6 8.1 0.00028 37.1 3.2 19 59-77 6-24 (205)
354 2rep_A Kinesin-like protein KI 52.5 6.1 0.00021 42.8 2.5 25 54-78 108-134 (376)
355 2qor_A Guanylate kinase; phosp 52.3 7 0.00024 37.9 2.7 20 58-77 10-29 (204)
356 1kag_A SKI, shikimate kinase I 52.2 7.1 0.00024 36.4 2.7 18 60-77 4-21 (173)
357 4a2w_A RIG-I, retinoic acid in 51.9 18 0.00062 44.0 6.9 79 92-177 630-721 (936)
358 3vkg_A Dynein heavy chain, cyt 51.7 23 0.00077 48.6 8.1 48 30-78 873-924 (3245)
359 3l9o_A ATP-dependent RNA helic 51.5 15 0.00051 45.6 6.1 79 250-339 211-295 (1108)
360 4a2p_A RIG-I, retinoic acid in 51.2 17 0.00057 40.7 6.1 71 266-340 55-136 (556)
361 3crm_A TRNA delta(2)-isopenten 50.9 7.8 0.00027 41.1 3.0 17 62-78 7-23 (323)
362 1z6g_A Guanylate kinase; struc 50.5 9.7 0.00033 37.5 3.5 19 58-76 21-39 (218)
363 2va8_A SSO2462, SKI2-type heli 50.4 42 0.0014 39.2 9.6 76 93-175 252-363 (715)
364 1ly1_A Polynucleotide kinase; 50.4 7 0.00024 36.5 2.3 16 62-77 4-19 (181)
365 3kb2_A SPBC2 prophage-derived 50.4 7 0.00024 36.2 2.3 16 62-77 3-18 (173)
366 4a2q_A RIG-I, retinoic acid in 50.1 21 0.00072 42.5 7.0 71 266-340 296-377 (797)
367 1y63_A LMAJ004144AAA protein; 50.0 7.7 0.00026 37.0 2.6 19 59-77 9-27 (184)
368 3hix_A ALR3790 protein; rhodan 49.9 17 0.00057 31.3 4.5 40 262-301 48-88 (106)
369 2z83_A Helicase/nucleoside tri 49.8 11 0.00039 41.6 4.3 68 93-173 190-258 (459)
370 2jtq_A Phage shock protein E; 49.8 33 0.0011 27.8 6.3 38 264-301 39-76 (85)
371 1u94_A RECA protein, recombina 49.7 14 0.00049 39.5 4.9 38 60-102 63-100 (356)
372 1nks_A Adenylate kinase; therm 49.5 12 0.00042 35.2 3.9 16 62-77 3-18 (194)
373 1m7g_A Adenylylsulfate kinase; 49.4 9.2 0.00032 37.2 3.1 31 46-77 12-42 (211)
374 1ry6_A Internal kinesin; kines 49.1 11 0.00039 40.5 3.9 20 59-78 82-103 (360)
375 4f4c_A Multidrug resistance pr 48.9 12 0.0004 47.6 4.6 43 166-208 570-612 (1321)
376 3rc3_A ATP-dependent RNA helic 48.8 36 0.0012 39.8 8.5 73 96-180 323-401 (677)
377 4dzz_A Plasmid partitioning pr 48.6 25 0.00087 33.4 6.2 31 65-100 7-37 (206)
378 3jvv_A Twitching mobility prot 48.5 8.9 0.0003 41.2 3.0 18 59-76 122-139 (356)
379 3uk6_A RUVB-like 2; hexameric 48.4 9.3 0.00032 40.5 3.2 18 61-78 71-88 (368)
380 2r8r_A Sensor protein; KDPD, P 48.1 16 0.00056 36.6 4.7 22 62-83 8-29 (228)
381 2yan_A Glutaredoxin-3; oxidore 48.1 60 0.0021 27.5 7.9 62 258-320 9-76 (105)
382 3eph_A TRNA isopentenyltransfe 47.7 9.1 0.00031 41.9 2.9 17 62-78 4-20 (409)
383 1s96_A Guanylate kinase, GMP k 47.4 8.7 0.0003 38.1 2.6 20 57-76 13-32 (219)
384 2ewv_A Twitching motility prot 47.3 8.6 0.00029 41.5 2.7 18 59-76 135-152 (372)
385 3d3q_A TRNA delta(2)-isopenten 47.3 9.7 0.00033 40.6 3.0 17 62-78 9-25 (340)
386 1z5z_A Helicase of the SNF2/RA 47.3 66 0.0023 32.7 9.4 96 68-178 92-193 (271)
387 1rj9_A FTSY, signal recognitio 46.9 16 0.00056 38.1 4.7 18 60-77 102-119 (304)
388 4gp7_A Metallophosphoesterase; 46.7 7.8 0.00027 36.6 2.0 20 59-78 8-27 (171)
389 4eun_A Thermoresistant glucoki 46.7 9.2 0.00031 36.9 2.6 19 59-77 28-46 (200)
390 2l82_A Designed protein OR32; 46.7 71 0.0024 27.7 7.7 55 269-323 5-59 (162)
391 1znw_A Guanylate kinase, GMP k 46.6 12 0.0004 36.4 3.3 22 56-77 16-37 (207)
392 2fsf_A Preprotein translocase 46.2 39 0.0013 40.3 8.2 55 265-325 114-172 (853)
393 1tev_A UMP-CMP kinase; ploop, 45.7 8.3 0.00028 36.5 2.0 19 60-78 3-21 (196)
394 3b6e_A Interferon-induced heli 45.7 19 0.00066 34.4 4.8 56 266-325 82-141 (216)
395 3zyw_A Glutaredoxin-3; metal b 45.5 68 0.0023 27.8 7.9 53 257-310 7-65 (111)
396 3cm0_A Adenylate kinase; ATP-b 45.5 7.2 0.00025 36.9 1.5 20 59-78 3-22 (186)
397 1knq_A Gluconate kinase; ALFA/ 45.5 8 0.00027 36.2 1.8 18 60-77 8-25 (175)
398 2v9p_A Replication protein E1; 45.4 13 0.00046 38.9 3.7 18 59-76 125-142 (305)
399 1sky_E F1-ATPase, F1-ATP synth 45.3 32 0.0011 38.3 6.9 27 52-78 140-169 (473)
400 3ipz_A Monothiol glutaredoxin- 45.3 78 0.0027 27.2 8.2 54 256-310 8-67 (109)
401 1tf5_A Preprotein translocase 44.7 48 0.0016 39.6 8.6 54 265-324 123-180 (844)
402 3iwh_A Rhodanese-like domain p 44.5 12 0.0004 32.4 2.6 38 263-300 53-90 (103)
403 2z0m_A 337AA long hypothetical 44.2 44 0.0015 34.2 7.6 54 266-324 56-113 (337)
404 2bdt_A BH3686; alpha-beta prot 44.1 10 0.00034 36.1 2.3 16 62-77 4-19 (189)
405 1w36_B RECB, exodeoxyribonucle 44.0 31 0.001 43.2 7.3 54 62-115 18-78 (1180)
406 1um8_A ATP-dependent CLP prote 43.8 11 0.00036 40.5 2.7 19 60-78 72-90 (376)
407 1xjc_A MOBB protein homolog; s 43.7 22 0.00074 33.9 4.6 24 62-86 6-29 (169)
408 3g5j_A Putative ATP/GTP bindin 43.6 26 0.00088 31.0 4.9 37 265-301 87-125 (134)
409 3nwj_A ATSK2; P loop, shikimat 43.6 15 0.00052 37.2 3.7 20 58-77 46-65 (250)
410 2rhm_A Putative kinase; P-loop 43.1 10 0.00036 35.8 2.3 17 61-77 6-22 (193)
411 1ixz_A ATP-dependent metallopr 43.1 10 0.00035 38.0 2.3 53 22-77 12-66 (254)
412 4fcw_A Chaperone protein CLPB; 43.0 21 0.00071 36.6 4.8 17 62-78 49-65 (311)
413 3b9q_A Chloroplast SRP recepto 42.8 17 0.00059 37.9 4.1 16 62-77 102-117 (302)
414 3uie_A Adenylyl-sulfate kinase 42.6 10 0.00034 36.6 2.1 32 45-77 11-42 (200)
415 1gmx_A GLPE protein; transfera 42.6 26 0.00088 30.0 4.6 39 263-301 55-94 (108)
416 3t61_A Gluconokinase; PSI-biol 42.3 11 0.00037 36.3 2.3 17 61-77 19-35 (202)
417 2c95_A Adenylate kinase 1; tra 42.3 12 0.00042 35.4 2.7 19 59-77 8-26 (196)
418 1c9k_A COBU, adenosylcobinamid 42.3 19 0.00064 34.7 3.9 32 63-103 2-33 (180)
419 3sxu_A DNA polymerase III subu 41.7 32 0.0011 32.0 5.3 82 251-344 24-105 (150)
420 2p6r_A Afuhel308 helicase; pro 41.3 27 0.00093 40.8 6.0 84 249-340 51-144 (702)
421 3gk5_A Uncharacterized rhodane 41.1 17 0.00058 31.4 3.2 38 264-301 53-90 (108)
422 3mm4_A Histidine kinase homolo 41.1 2.4E+02 0.008 26.6 12.7 136 58-220 18-174 (206)
423 3qf7_A RAD50; ABC-ATPase, ATPa 41.1 11 0.00038 40.5 2.3 16 62-77 25-40 (365)
424 1f2t_A RAD50 ABC-ATPase; DNA d 41.0 12 0.00042 34.5 2.3 15 62-76 25-39 (149)
425 2c9o_A RUVB-like 1; hexameric 40.9 14 0.00048 40.9 3.2 18 61-78 64-81 (456)
426 1zuh_A Shikimate kinase; alpha 40.5 13 0.00043 34.6 2.4 18 61-78 8-25 (168)
427 3lnc_A Guanylate kinase, GMP k 40.5 11 0.00039 37.1 2.2 19 59-77 26-44 (231)
428 4h1g_A Maltose binding protein 40.2 16 0.00053 43.1 3.6 25 53-77 454-480 (715)
429 1qf9_A UMP/CMP kinase, protein 40.1 12 0.00042 35.1 2.3 16 62-77 8-23 (194)
430 3fb4_A Adenylate kinase; psych 40.0 12 0.00043 36.2 2.3 17 62-78 2-18 (216)
431 2r62_A Cell division protease 40.0 6.6 0.00023 39.7 0.3 19 60-78 44-62 (268)
432 2bwj_A Adenylate kinase 5; pho 39.6 13 0.00043 35.4 2.3 19 59-77 11-29 (199)
433 3l49_A ABC sugar (ribose) tran 39.5 2.9E+02 0.0098 27.2 13.4 40 252-291 176-215 (291)
434 1cke_A CK, MSSA, protein (cyti 39.4 13 0.00044 36.3 2.3 17 61-77 6-22 (227)
435 1via_A Shikimate kinase; struc 39.4 14 0.00048 34.6 2.5 17 62-78 6-22 (175)
436 1e6c_A Shikimate kinase; phosp 39.3 13 0.00045 34.4 2.3 17 61-77 3-19 (173)
437 1wv9_A Rhodanese homolog TT165 38.9 22 0.00075 29.7 3.5 37 264-301 52-88 (94)
438 1nij_A Hypothetical protein YJ 38.9 17 0.00059 38.1 3.4 33 63-102 7-39 (318)
439 2iyv_A Shikimate kinase, SK; t 38.9 14 0.00046 34.9 2.3 18 61-78 3-20 (184)
440 3asz_A Uridine kinase; cytidin 38.8 12 0.00042 36.1 2.0 17 60-76 6-22 (211)
441 3foj_A Uncharacterized protein 38.7 17 0.00059 30.8 2.8 38 264-301 54-91 (100)
442 2v54_A DTMP kinase, thymidylat 38.7 15 0.0005 35.2 2.6 19 59-77 3-21 (204)
443 2plr_A DTMP kinase, probable t 38.7 11 0.00038 36.2 1.7 19 59-77 3-21 (213)
444 4a74_A DNA repair and recombin 38.6 15 0.00051 35.7 2.7 19 60-78 25-43 (231)
445 1zd8_A GTP:AMP phosphotransfer 38.6 13 0.00045 36.5 2.3 18 60-77 7-24 (227)
446 3dl0_A Adenylate kinase; phosp 38.6 14 0.00046 36.0 2.3 17 62-78 2-18 (216)
447 3c8u_A Fructokinase; YP_612366 38.6 11 0.00038 36.6 1.7 17 60-76 22-38 (208)
448 1iy2_A ATP-dependent metallopr 38.6 13 0.00045 37.9 2.3 53 21-77 35-90 (278)
449 1gvn_B Zeta; postsegregational 38.5 12 0.0004 38.8 2.0 16 62-77 35-50 (287)
450 3eme_A Rhodanese-like domain p 38.3 17 0.00057 31.0 2.6 37 264-300 54-90 (103)
451 3kta_A Chromosome segregation 38.1 18 0.00063 33.9 3.1 16 62-77 28-43 (182)
452 2zj8_A DNA helicase, putative 37.9 46 0.0016 38.9 7.2 74 93-173 237-343 (720)
453 2fsx_A RV0390, COG0607: rhodan 37.9 44 0.0015 30.4 5.7 38 264-301 78-116 (148)
454 1ukz_A Uridylate kinase; trans 37.8 14 0.00049 35.4 2.3 16 62-77 17-32 (203)
455 2pez_A Bifunctional 3'-phospho 37.6 13 0.00046 34.8 2.1 19 59-77 4-22 (179)
456 3tqc_A Pantothenate kinase; bi 37.5 52 0.0018 34.6 6.8 15 63-77 95-109 (321)
457 4anj_A Unconventional myosin-V 37.4 29 0.00098 42.6 5.4 64 22-86 97-169 (1052)
458 3auy_A DNA double-strand break 37.3 14 0.00046 39.8 2.3 16 62-77 27-42 (371)
459 1g8p_A Magnesium-chelatase 38 37.3 15 0.00053 38.3 2.7 18 60-77 45-62 (350)
460 1np6_A Molybdopterin-guanine d 37.3 30 0.001 32.9 4.5 15 62-76 8-22 (174)
461 2jaq_A Deoxyguanosine kinase; 37.3 15 0.0005 35.0 2.3 15 62-76 2-16 (205)
462 1jjv_A Dephospho-COA kinase; P 37.2 15 0.0005 35.4 2.3 16 62-77 4-19 (206)
463 2cdn_A Adenylate kinase; phosp 37.2 15 0.0005 35.3 2.3 17 61-77 21-37 (201)
464 1zak_A Adenylate kinase; ATP:A 37.1 14 0.0005 36.0 2.3 18 61-78 6-23 (222)
465 2og2_A Putative signal recogni 37.1 23 0.0008 37.9 4.1 16 62-77 159-174 (359)
466 1nkt_A Preprotein translocase 37.1 68 0.0023 38.5 8.3 54 265-324 151-208 (922)
467 2pt5_A Shikimate kinase, SK; a 37.0 15 0.00051 33.9 2.3 16 62-77 2-17 (168)
468 2qt1_A Nicotinamide riboside k 36.9 15 0.0005 35.5 2.3 18 60-77 21-38 (207)
469 2ipc_A Preprotein translocase 36.9 64 0.0022 38.9 8.0 55 265-325 119-177 (997)
470 2if2_A Dephospho-COA kinase; a 36.8 15 0.00051 35.3 2.3 16 62-77 3-18 (204)
471 1aky_A Adenylate kinase; ATP:A 36.8 16 0.00055 35.6 2.6 18 60-77 4-21 (220)
472 1in4_A RUVB, holliday junction 36.7 19 0.00065 37.9 3.3 17 61-77 52-68 (334)
473 3dmq_A RNA polymerase-associat 36.0 42 0.0015 40.9 6.6 77 92-178 502-584 (968)
474 3k4h_A Putative transcriptiona 35.7 2.8E+02 0.0096 27.2 12.1 27 266-292 191-217 (292)
475 1ye8_A Protein THEP1, hypothet 35.6 20 0.0007 34.1 3.0 15 62-76 2-16 (178)
476 3ilm_A ALR3790 protein; rhodan 35.6 31 0.0011 31.4 4.1 40 262-301 52-92 (141)
477 2pbr_A DTMP kinase, thymidylat 35.6 16 0.00056 34.4 2.3 15 63-77 3-17 (195)
478 2yvu_A Probable adenylyl-sulfa 35.5 15 0.00052 34.7 2.1 19 60-78 13-31 (186)
479 1tq1_A AT5G66040, senescence-a 35.3 27 0.00091 31.2 3.6 39 263-301 79-118 (129)
480 2f1r_A Molybdopterin-guanine d 35.1 15 0.00051 34.9 1.9 16 62-77 4-19 (171)
481 2wwf_A Thymidilate kinase, put 35.1 18 0.0006 34.8 2.5 19 59-77 9-27 (212)
482 3tif_A Uncharacterized ABC tra 34.5 18 0.00063 36.1 2.6 17 59-75 30-46 (235)
483 1nn5_A Similar to deoxythymidy 34.3 19 0.00064 34.7 2.6 19 59-77 8-26 (215)
484 1e4v_A Adenylate kinase; trans 34.2 17 0.00059 35.3 2.3 16 62-77 2-17 (214)
485 2i3b_A HCR-ntpase, human cance 34.0 25 0.00085 33.9 3.4 42 166-210 103-146 (189)
486 1uf9_A TT1252 protein; P-loop, 34.0 17 0.00059 34.5 2.2 16 62-77 10-25 (203)
487 1zu4_A FTSY; GTPase, signal re 34.0 32 0.0011 36.1 4.5 17 62-78 107-123 (320)
488 2z0h_A DTMP kinase, thymidylat 34.0 18 0.00061 34.2 2.3 15 63-77 3-17 (197)
489 3h75_A Periplasmic sugar-bindi 34.0 3.9E+02 0.013 27.2 17.3 38 252-292 193-230 (350)
490 2bbw_A Adenylate kinase 4, AK4 33.7 18 0.0006 36.1 2.3 18 60-77 27-44 (246)
491 3h1t_A Type I site-specific re 33.4 87 0.003 35.4 8.4 80 92-178 438-527 (590)
492 3a4m_A L-seryl-tRNA(SEC) kinas 33.3 18 0.00061 36.6 2.3 17 61-77 5-21 (260)
493 2vli_A Antibiotic resistance p 33.2 14 0.00048 34.6 1.4 20 59-78 4-23 (183)
494 3fkq_A NTRC-like two-domain pr 33.2 51 0.0017 35.2 6.0 32 64-100 148-179 (373)
495 2h17_A ADP-ribosylation factor 33.1 15 0.00052 34.3 1.6 29 48-76 9-37 (181)
496 1cs1_A CGS, protein (cystathio 33.0 4.3E+02 0.015 27.3 14.0 110 53-182 60-180 (386)
497 3sr0_A Adenylate kinase; phosp 32.8 24 0.00082 34.6 3.0 16 63-78 3-18 (206)
498 3uug_A Multiple sugar-binding 32.7 2.5E+02 0.0087 28.2 11.3 42 251-292 188-229 (330)
499 3pxg_A Negative regulator of g 32.3 23 0.00079 39.3 3.2 18 61-78 202-219 (468)
500 1g41_A Heat shock protein HSLU 32.1 20 0.00068 39.7 2.6 18 60-77 50-67 (444)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6.3e-61 Score=543.37 Aligned_cols=368 Identities=34% Similarity=0.583 Sum_probs=337.6
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcC---CCCCeEEEE
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRALI 98 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~---~~~g~r~LI 98 (786)
..+|++++|++.++++|..+||..|||+|.++||.++.|+|++++|+||||||++|++|+++.+.... ...++++||
T Consensus 55 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~li 134 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVI 134 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEE
T ss_pred cCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEE
Confidence 45899999999999999999999999999999999999999999999999999999999999987642 234678999
Q ss_pred EcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcc
Q 003924 99 LSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (786)
Q Consensus 99 L~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah 178 (786)
|+||++||.|+++.+..++...++++.+++||.....+...+..+++|+|+||++|++++.. ..+.+.++++|||||||
T Consensus 135 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlDEah 213 (434)
T 2db3_A 135 VSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDR-TFITFEDTRFVVLDEAD 213 (434)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSCCCTTCCEEEEETHH
T ss_pred EecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHh-CCcccccCCeEEEccHh
Confidence 99999999999999999999889999999999999988888889999999999999999886 45778999999999999
Q ss_pred ccccCChHHHHHHHHhhc--ccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHH
Q 003924 179 CLFGMGFAEQLHKILGQL--SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256 (786)
Q Consensus 179 ~l~~~gf~~~l~~Il~~l--~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll 256 (786)
+++++||...+..|+..+ +..+|+++||||+|..+..++..++.+|..+.+.........+.+.+..+....+...|+
T Consensus 214 ~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~ 293 (434)
T 2db3_A 214 RMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLI 293 (434)
T ss_dssp HHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHH
T ss_pred hhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHH
Confidence 999999999999999875 678999999999999999999999999988888776666677888888899999999999
Q ss_pred HHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcc
Q 003924 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (786)
Q Consensus 257 ~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~ 336 (786)
.++... ..++||||+|+.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 294 ~~l~~~---~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 294 EILSEQ---ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIK 370 (434)
T ss_dssp HHHHHC---CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCC
T ss_pred HHHHhC---CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCC
Confidence 999875 34599999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEecCCCCCHhHHHHHhhccccCCCccEEEEEEec-ccHHHHHHHHHHhcCCCCCCC
Q 003924 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS-EDMAYLLDLHLFLSKPIRAAP 393 (786)
Q Consensus 337 ~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~-~e~~~l~~l~~~l~~~~~~~p 393 (786)
+||+||+|.++..|+||+||+||+|+.|.|++|+++ .+...+.++...+.......|
T Consensus 371 ~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp 428 (434)
T 2db3_A 371 HVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVP 428 (434)
T ss_dssp EEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCC
T ss_pred EEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999999999999999999996 466777777777765555444
No 2
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.5e-57 Score=508.11 Aligned_cols=368 Identities=32% Similarity=0.562 Sum_probs=337.4
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P 101 (786)
..+|++|+|++.++++|...||..|+|+|.++++.++.|+++++.+|||||||++|++|+++.+... ..+.++|||+|
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil~P 113 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ--VRETQALILAP 113 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT--SCSCCEEEECS
T ss_pred CCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc--cCCceEEEEcC
Confidence 4679999999999999999999999999999999999999999999999999999999999887532 24678999999
Q ss_pred cHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 102 treLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
|++|+.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|++++.. ..+.+..+++|||||||++.
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~-~~~~~~~~~~vViDEah~~~ 192 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR-RSLRTRAIKMLVLDEADEML 192 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHHT
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh-CCccHhheeEEEEccHHHHH
Confidence 99999999999999999999999999999999888888888899999999999999886 46778899999999999999
Q ss_pred cCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHH-HHHHHHHHHH
Q 003924 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAALLYMIR 260 (786)
Q Consensus 182 ~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~-k~~~Ll~lL~ 260 (786)
+++|...+..++..++...|++++|||+|..+..++..++.+|..+.+.........+.+.+..+.... +...|..++.
T Consensus 193 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~ 272 (410)
T 2j0s_A 193 NKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYD 272 (410)
T ss_dssp STTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHH
Confidence 999999999999999999999999999999999998899999887777666555666777776665444 7888888887
Q ss_pred HhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEe
Q 003924 261 EHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN 340 (786)
Q Consensus 261 ~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~ 340 (786)
.. ...++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++||+
T Consensus 273 ~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~ 350 (410)
T 2j0s_A 273 TL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN 350 (410)
T ss_dssp HH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE
T ss_pred hc--CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE
Confidence 65 4569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCCC
Q 003924 341 WDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (786)
Q Consensus 341 ~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~ 394 (786)
||+|.++..|+||+||+||.|+.|.|++|+++.|...+.+++.+++..+...|.
T Consensus 351 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 404 (410)
T 2j0s_A 351 YDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPM 404 (410)
T ss_dssp SSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCS
T ss_pred ECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHhCCCceeccc
Confidence 999999999999999999999999999999999999999999999988776653
No 3
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.1e-57 Score=506.77 Aligned_cols=370 Identities=31% Similarity=0.530 Sum_probs=331.3
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC----------
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP---------- 90 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~---------- 90 (786)
...+|++|+|++.++++|..+||..|||+|.++||.++.++++++.||||||||++|++|+++.+.....
T Consensus 13 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (417)
T 2i4i_A 13 HIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKEN 92 (417)
T ss_dssp CCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccc
Confidence 3457999999999999999999999999999999999999999999999999999999999998865321
Q ss_pred ------CCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCC
Q 003924 91 ------QGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM 164 (786)
Q Consensus 91 ------~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l 164 (786)
..++++|||+||++|+.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|.+++.. ..+
T Consensus 93 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~ 171 (417)
T 2i4i_A 93 GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER-GKI 171 (417)
T ss_dssp BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT-TSB
T ss_pred cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc-CCc
Confidence 1236799999999999999999999998889999999999999988888888999999999999998876 457
Q ss_pred CCCceeeEEeCCccccccCChHHHHHHHHhh--ccc--CCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCce
Q 003924 165 SLKSVEYVVFDEADCLFGMGFAEQLHKILGQ--LSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLK 240 (786)
Q Consensus 165 ~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~--l~~--~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~ 240 (786)
.+..+++|||||||++.+++|...+..++.. ++. .+|+++||||+|..+..++..++.+|..+.+.......+.+.
T Consensus 172 ~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (417)
T 2i4i_A 172 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENIT 251 (417)
T ss_dssp CCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEE
T ss_pred ChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCce
Confidence 7899999999999999999999999999884 333 679999999999999999999999998887776666677788
Q ss_pred eeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEE
Q 003924 241 LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320 (786)
Q Consensus 241 ~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~IL 320 (786)
+.+..+....+...+..++... ..+.++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+||
T Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vl 330 (417)
T 2i4i_A 252 QKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPIL 330 (417)
T ss_dssp EEEEECCGGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEE
T ss_pred EEEEEeccHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEE
Confidence 8888888888988888888764 457789999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCC
Q 003924 321 IVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA 392 (786)
Q Consensus 321 VaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~ 392 (786)
|||+++++|||+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++.|...+.++..++.......
T Consensus 331 vaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 402 (417)
T 2i4i_A 331 VATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQEV 402 (417)
T ss_dssp EECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCC
T ss_pred EECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcC
Confidence 999999999999999999999999999999999999999999999999999999998888887776544433
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4.8e-55 Score=487.61 Aligned_cols=369 Identities=30% Similarity=0.515 Sum_probs=333.3
Q ss_pred CCCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEE
Q 003924 20 SKSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (786)
Q Consensus 20 ~~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL 99 (786)
....+|++|+|++.++++|..+||..|+|+|.++++.++.++++++.+|||||||++|++|++..+... ..+.++|||
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil 95 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK--LNKIQALIM 95 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCEEEE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc--cCCccEEEE
Confidence 456789999999999999999999999999999999999999999999999999999999999887543 235689999
Q ss_pred cCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccc
Q 003924 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (786)
Q Consensus 100 ~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~ 179 (786)
+||++|+.|+++.+..++...++.+..++|+.....+...+..+++|+|+||++|++++.. ....+.++++|||||||+
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~ 174 (400)
T 1s2m_A 96 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR-KVADLSDCSLFIMDEADK 174 (400)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEESHHH
T ss_pred cCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh-CCcccccCCEEEEeCchH
Confidence 9999999999999999998889999999999998888777778999999999999988876 356788999999999999
Q ss_pred cccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHH
Q 003924 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (786)
Q Consensus 180 l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL 259 (786)
+.+.+|...+..++..++...+++++|||+|..+..++..++.+|..+.+... .....+...+..+....+...+..++
T Consensus 175 ~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~~ 253 (400)
T 1s2m_A 175 MLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE-LTLKGITQYYAFVEERQKLHCLNTLF 253 (400)
T ss_dssp HSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS-CBCTTEEEEEEECCGGGHHHHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc-cccCCceeEEEEechhhHHHHHHHHH
Confidence 99988999999999999999999999999999999999998888866654433 23345666777777788888888888
Q ss_pred HHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeE
Q 003924 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (786)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI 339 (786)
... ..+++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 254 ~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi 331 (400)
T 1s2m_A 254 SKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVI 331 (400)
T ss_dssp HHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEE
T ss_pred hhc--CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEE
Confidence 764 567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCCC
Q 003924 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (786)
Q Consensus 340 ~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~ 394 (786)
+|++|.++..|+||+||+||.|+.|.|++|+++.|...+..++..++..+...|.
T Consensus 332 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 386 (400)
T 1s2m_A 332 NFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPA 386 (400)
T ss_dssp ESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCS
T ss_pred EeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccc
Confidence 9999999999999999999999999999999999999999999999988776653
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.9e-55 Score=492.45 Aligned_cols=369 Identities=33% Similarity=0.567 Sum_probs=322.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P 101 (786)
..+|++++|++.++++|...||..|+|+|.++|+.++.|+++++.+|||||||++|++|+++.+... ..+.++|||+|
T Consensus 39 ~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P 116 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD--LKATQALVLAP 116 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT--SCSCCEEEECS
T ss_pred hcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc--CCceeEEEEeC
Confidence 4689999999999999999999999999999999999999999999999999999999999887643 24668999999
Q ss_pred cHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHc-CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccc
Q 003924 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (786)
Q Consensus 102 treLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l 180 (786)
|++|+.|+++.+..++...++.+..++||.....+...+. .+++|+|+||++|++++.. ..+.+..+++|||||||++
T Consensus 117 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~~vViDEah~~ 195 (414)
T 3eiq_A 117 TRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNR-RYLSPKYIKMFVLDEADEM 195 (414)
T ss_dssp SHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHH-TSSCSTTCCEEEECSHHHH
T ss_pred hHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcccccCcEEEEECHHHh
Confidence 9999999999999999999999999999999888877766 7899999999999999887 4677888999999999999
Q ss_pred ccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchH-HHHHHHHHHH
Q 003924 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQE-EKHAALLYMI 259 (786)
Q Consensus 181 ~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~-~k~~~Ll~lL 259 (786)
.+.+|...+..++..++..+|+++||||++..+..++..++.+|..+.+.........+...+..+... .+...+..++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 275 (414)
T 3eiq_A 196 LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLY 275 (414)
T ss_dssp HHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHH
T ss_pred hccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998887776666666676666666544 4777777777
Q ss_pred HHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeE
Q 003924 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (786)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI 339 (786)
... ..+++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|..+|||||+++++|||+|++++||
T Consensus 276 ~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi 353 (414)
T 3eiq_A 276 ETL--TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVI 353 (414)
T ss_dssp HSS--CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEE
T ss_pred HhC--CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEE
Confidence 754 567899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCCCH
Q 003924 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPSE 395 (786)
Q Consensus 340 ~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~~ 395 (786)
+|++|.++..|+||+||+||.|+.|.|++|+++.+...+..++.+++..+...|..
T Consensus 354 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (414)
T 3eiq_A 354 NYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLN 409 (414)
T ss_dssp ESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-
T ss_pred EeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChh
Confidence 99999999999999999999999999999999999999999999999888776644
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=5.6e-54 Score=476.84 Aligned_cols=370 Identities=29% Similarity=0.503 Sum_probs=328.8
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~ 100 (786)
.+.+|++|+|++.++++|..+||..|+|+|.++++.++.++++++.+|||+|||++|++|++..+... ..+.++||++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil~ 83 (391)
T 1xti_A 6 MSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVMC 83 (391)
T ss_dssp ---CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC--TTCCCEEEEC
T ss_pred CCCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc--CCCeeEEEEC
Confidence 34689999999999999999999999999999999999999999999999999999999999887543 2356899999
Q ss_pred CcHHHHHHHHHHHHHHccCC-CCeEEEEEcCCChhHHHHHHc-CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcc
Q 003924 101 PTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (786)
Q Consensus 101 PtreLa~Q~~~~l~~l~~~~-~l~v~~l~gg~~~~~~~~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah 178 (786)
||++|+.|+++.+..+.... ++.+..++||.....+...+. ..++|+|+||++|..++.. ..+.+.++++|||||||
T Consensus 84 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 84 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECD 162 (391)
T ss_dssp SCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCSEEEECSHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc-CCccccccCEEEEeCHH
Confidence 99999999999999998765 799999999998877766654 4589999999999998876 45678999999999999
Q ss_pred cccc-CChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccc-cCCCceeeeeecchHHHHHHHH
Q 003924 179 CLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK-ISPDLKLAFFTLRQEEKHAALL 256 (786)
Q Consensus 179 ~l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~-~~~~l~~~~~~v~~~~k~~~Ll 256 (786)
++.+ .++...+..++..++...|++++|||++..+..++..++.+|..+.+..... ....+...+..+....+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 9987 4788899999999999999999999999999999999999887776655432 3345667777788888888888
Q ss_pred HHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcc
Q 003924 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (786)
Q Consensus 257 ~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~ 336 (786)
.++... .++++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 243 ~~l~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~ 320 (391)
T 1xti_A 243 DLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 320 (391)
T ss_dssp HHHHHS--CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEE
T ss_pred HHHHhc--CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCC
Confidence 888865 678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecc-cHHHHHHHHHHhcCCCCCCCCH
Q 003924 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPIRAAPSE 395 (786)
Q Consensus 337 ~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~-e~~~l~~l~~~l~~~~~~~p~~ 395 (786)
+||+|++|.++..|+||+||+||.|+.|.|++|+++. +..++..++..++..+...|..
T Consensus 321 ~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (391)
T 1xti_A 321 IAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 380 (391)
T ss_dssp EEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSC
T ss_pred EEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcc
Confidence 9999999999999999999999999999999999986 5567888888888777666643
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=6.2e-54 Score=479.39 Aligned_cols=367 Identities=31% Similarity=0.539 Sum_probs=325.7
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEE
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALI 98 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g--~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LI 98 (786)
...+|++++|++.++++|..+||..|+|+|.++|+.++.+ +++++.||||||||++|++|+++.+... ..+.++||
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--~~~~~~li 100 (412)
T 3fht_A 23 SVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLC 100 (412)
T ss_dssp CSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--SCSCCEEE
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc--CCCCCEEE
Confidence 4568999999999999999999999999999999999997 9999999999999999999999987653 24568999
Q ss_pred EcCcHHHHHHHHHHHHHHccCC-CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCc
Q 003924 99 LSPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (786)
Q Consensus 99 L~PtreLa~Q~~~~l~~l~~~~-~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEa 177 (786)
|+||++|+.|+++.+..++... ++.+....++...... ....++|+|+||++|++++.....+.+.++++||||||
T Consensus 101 l~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEa 177 (412)
T 3fht_A 101 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 177 (412)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETH
T ss_pred ECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCH
Confidence 9999999999999999988764 7888888888765433 24568999999999999997656677899999999999
Q ss_pred ccccc-CChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecc-hHHHHHHH
Q 003924 178 DCLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHAAL 255 (786)
Q Consensus 178 h~l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~-~~~k~~~L 255 (786)
|++.+ .++...+..++..++..+|++++|||++..+..++..++.+|..+.+.........+...+..+. ...+...+
T Consensus 178 h~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 257 (412)
T 3fht_A 178 DVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQAL 257 (412)
T ss_dssp HHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHH
T ss_pred HHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHH
Confidence 99987 78999999999999999999999999999999999999999988888777666677777766664 45677777
Q ss_pred HHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCc
Q 003924 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL 335 (786)
Q Consensus 256 l~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v 335 (786)
..++... .+.++||||+++.+++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++
T Consensus 258 ~~~~~~~--~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~ 335 (412)
T 3fht_A 258 CNLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQV 335 (412)
T ss_dssp HHHHHHH--SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTE
T ss_pred HHHHhhc--CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCC
Confidence 7777765 46799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEecCCC------CCHhHHHHHhhccccCCCccEEEEEEeccc-HHHHHHHHHHhcCCCCCCCC
Q 003924 336 DNVINWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTSED-MAYLLDLHLFLSKPIRAAPS 394 (786)
Q Consensus 336 ~~VI~~d~P------~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e-~~~l~~l~~~l~~~~~~~p~ 394 (786)
++||+||+| .+...|+||+||+||.|+.|.|++|+++.+ ..++..++..+...+...+.
T Consensus 336 ~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 401 (412)
T 3fht_A 336 SVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 401 (412)
T ss_dssp EEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--
T ss_pred CEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCC
Confidence 999999999 467899999999999999999999999764 88899999888877766543
No 8
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.6e-53 Score=467.77 Aligned_cols=360 Identities=34% Similarity=0.638 Sum_probs=327.4
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEE
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g-~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL 99 (786)
...+|++|+|++.++++|..+||..|+|+|.++++.++.+ +++++.+|||||||++|++|+++.+... .+.++||+
T Consensus 4 ~~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---~~~~~lil 80 (367)
T 1hv8_A 4 EYMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN---NGIEAIIL 80 (367)
T ss_dssp CCCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS---SSCCEEEE
T ss_pred ccCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc---CCCcEEEE
Confidence 3568999999999999999999999999999999999998 6999999999999999999999877542 46789999
Q ss_pred cCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccc
Q 003924 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (786)
Q Consensus 100 ~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~ 179 (786)
+|+++|+.|+++.+..+....++.+..++||.....+...+. +++|+|+||++|.+++.. ..+.+.++++|||||||.
T Consensus 81 ~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 81 TPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINR-GTLNLKNVKYFILDEADE 158 (367)
T ss_dssp CSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHT-TCSCTTSCCEEEEETHHH
T ss_pred cCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHc-CCcccccCCEEEEeCchH
Confidence 999999999999999998888899999999998877766654 699999999999998876 456788999999999999
Q ss_pred cccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHH
Q 003924 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (786)
Q Consensus 180 l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL 259 (786)
+.+.+|...+..++..++...+++++|||++..+..++..++.++..+.... ...+...+..+....+...+..++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~l 234 (367)
T 1hv8_A 159 MLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKI----NANIEQSYVEVNENERFEALCRLL 234 (367)
T ss_dssp HHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCS----SSSSEEEEEECCGGGHHHHHHHHH
T ss_pred hhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecC----CCCceEEEEEeChHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888876665433 345667778888888888888877
Q ss_pred HHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeE
Q 003924 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (786)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI 339 (786)
. ..+.++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 235 ~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi 311 (367)
T 1hv8_A 235 K---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 311 (367)
T ss_dssp C---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE
T ss_pred h---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEE
Confidence 6 3577999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCC
Q 003924 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA 392 (786)
Q Consensus 340 ~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~ 392 (786)
++++|.++..|+||+||+||.|+.|.+++++++.|...+..++..++..+...
T Consensus 312 ~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 364 (367)
T 1hv8_A 312 NYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAMKLKIKKL 364 (367)
T ss_dssp ESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHHTCCCCCB
T ss_pred EecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHhCCCCcee
Confidence 99999999999999999999999999999999999999999999988776543
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=3.6e-53 Score=469.67 Aligned_cols=363 Identities=30% Similarity=0.560 Sum_probs=319.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEE
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g--~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL 99 (786)
..+|+++||++.++++|..+||..|+|+|.++++.++.+ +++++.+|||||||++|++|+++.+... ..+.++|||
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil 81 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE--DASPQAICL 81 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT--CCSCCEEEE
T ss_pred ccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC--CCCccEEEE
Confidence 468999999999999999999999999999999999998 8999999999999999999999887643 246689999
Q ss_pred cCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccc
Q 003924 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (786)
Q Consensus 100 ~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~ 179 (786)
+||++|+.|+++.+..++...++.+..++++...... ..+++|+|+||++|++++.. ..+.+.++++|||||||+
T Consensus 82 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~-~~~~~~~~~~iIiDEah~ 156 (395)
T 3pey_A 82 APSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRR-KLMQLQKIKIFVLDEADN 156 (395)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHT-TCBCCTTCCEEEEETHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHc-CCcccccCCEEEEEChhh
Confidence 9999999999999999998889999888887653322 34789999999999998876 467789999999999999
Q ss_pred ccc-CChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecc-hHHHHHHHHH
Q 003924 180 LFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHAALLY 257 (786)
Q Consensus 180 l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~-~~~k~~~Ll~ 257 (786)
+.+ .++...+..++..++...|++++|||+++.+..++...+.++..+.+.........+...+..+. ...+...+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 236 (395)
T 3pey_A 157 MLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTE 236 (395)
T ss_dssp HHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHH
T ss_pred hcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHH
Confidence 987 78999999999999999999999999999999999999998888777766666666766666664 4455666655
Q ss_pred HHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcce
Q 003924 258 MIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN 337 (786)
Q Consensus 258 lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~ 337 (786)
++... .++++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++
T Consensus 237 ~~~~~--~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~ 314 (395)
T 3pey_A 237 LYGLM--TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSM 314 (395)
T ss_dssp HHTTT--TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEE
T ss_pred HHHhc--cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCE
Confidence 55443 5679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEecCCCC------CHhHHHHHhhccccCCCccEEEEEEec-ccHHHHHHHHHHhc-CCCCCCC
Q 003924 338 VINWDFPP------KPKIFVHRVGRAARAGRTGTAFSFVTS-EDMAYLLDLHLFLS-KPIRAAP 393 (786)
Q Consensus 338 VI~~d~P~------s~~~~vQRvGR~gR~G~~G~ai~lv~~-~e~~~l~~l~~~l~-~~~~~~p 393 (786)
||+||+|. ++..|+||+||+||.|+.|.|++|+.+ ++..++..++.+++ ..+...|
T Consensus 315 Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (395)
T 3pey_A 315 VVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVP 378 (395)
T ss_dssp EEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECC
T ss_pred EEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCC
Confidence 99999998 999999999999999999999999997 45667778877776 4444443
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.1e-53 Score=501.20 Aligned_cols=370 Identities=33% Similarity=0.517 Sum_probs=313.7
Q ss_pred CCCCccCCC----CCHHHHHHHHHCCCCCChHHHHHHHHHHH--cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC--CC
Q 003924 21 KSGGFESLN----LSPNVFRAIKRKGYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QG 92 (786)
Q Consensus 21 ~~~~f~~lg----Ls~~ll~~l~~~g~~~ptpiQ~~aip~il--~g~dvvl~a~TGSGKT~afllpile~L~~~~~--~~ 92 (786)
...+|+++. |++.++++|..+||..|||+|.++|+.++ .+++++++||||||||++|++|+++.+..... ..
T Consensus 15 ~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~ 94 (579)
T 3sqw_A 15 KEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQY 94 (579)
T ss_dssp CCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTT
T ss_pred CCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccC
Confidence 455677775 99999999999999999999999999999 78899999999999999999999999876432 23
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHcc----CCCCeEEEEEcCCChhHHHHHHc-CCCCEEEECcHHHHHHHhhccCCCCC
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGR----YTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLK 167 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~----~~~l~v~~l~gg~~~~~~~~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~ 167 (786)
+.++|||+||++|+.|+++.+..+.. ...+.+..++||.....+...+. .+++|+|+||++|++++.......+.
T Consensus 95 ~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 174 (579)
T 3sqw_A 95 MVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFR 174 (579)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCT
T ss_pred CCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccc
Confidence 56899999999999999999998753 34578899999999888877764 47999999999999998764345688
Q ss_pred ceeeEEeCCccccccCChHHHHHHHHhhccc-------CCceEEEeccCcHHHHHHHHhcCCCCcceeecccc----ccC
Q 003924 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSE-------NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT----KIS 236 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~-------~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~----~~~ 236 (786)
.+++|||||||++++++|...+..|+..++. .+|+++||||+|+.+..++..++.+|..+.+.... ...
T Consensus 175 ~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~ 254 (579)
T 3sqw_A 175 FVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAH 254 (579)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSC
T ss_pred cCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccc
Confidence 8999999999999999999999999887753 67999999999999999999999988766654322 222
Q ss_pred CCceeeeeecch-HHHHHHHHHHHHHhc---cCCCcEEEEEcchhhHHHHHHHHHHc---CCCceeecCCCCHHHHHHHH
Q 003924 237 PDLKLAFFTLRQ-EEKHAALLYMIREHI---SSDQQTLIFVSTKHHVEFLNVLFREE---GLEPSVCYGDMDQDARKIHV 309 (786)
Q Consensus 237 ~~l~~~~~~v~~-~~k~~~Ll~lL~~~~---~~~~k~IVF~~t~~~ae~l~~~L~~~---g~~v~~lhg~l~q~~R~~~l 309 (786)
..+.+.+..+.. ......++..+...+ ..+.++||||+|+.+++.++..|... ++.+..+||+|++.+|..++
T Consensus 255 ~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~ 334 (579)
T 3sqw_A 255 ERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLV 334 (579)
T ss_dssp TTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHH
T ss_pred cccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHH
Confidence 333444443332 223333333332221 35679999999999999999999887 89999999999999999999
Q ss_pred HHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCC
Q 003924 310 SRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPI 389 (786)
Q Consensus 310 ~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~ 389 (786)
+.|+.|+.+|||||+++++|||+|++++||+|++|.++..|+||+||+||+|+.|.|++|+++.|..++..++......+
T Consensus 335 ~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~ 414 (579)
T 3sqw_A 335 KRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVI 414 (579)
T ss_dssp HHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCC
T ss_pred HHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988876655
Q ss_pred C
Q 003924 390 R 390 (786)
Q Consensus 390 ~ 390 (786)
.
T Consensus 415 ~ 415 (579)
T 3sqw_A 415 A 415 (579)
T ss_dssp C
T ss_pred c
Confidence 4
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.7e-55 Score=501.77 Aligned_cols=365 Identities=31% Similarity=0.529 Sum_probs=181.9
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEE
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g--~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL 99 (786)
..+|++++|++.++++|..+||..|||+|.++||.++.+ ++++++||||||||++|++|+++.+... ..++++|||
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~--~~~~~~lil 168 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLCL 168 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT--SCSCCEEEE
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc--CCCCcEEEE
Confidence 348999999999999999999999999999999999987 8999999999999999999999887653 235589999
Q ss_pred cCcHHHHHHHHHHHHHHccCC-CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcc
Q 003924 100 SPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (786)
Q Consensus 100 ~PtreLa~Q~~~~l~~l~~~~-~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah 178 (786)
+||++|+.|+++.+..++... ++.+.+.+++....... ...++|+|+||++|++++.....+.+.++++|||||||
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah 245 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHH
T ss_pred eChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHH
Confidence 999999999999999988764 68888888876654321 34679999999999999977667788999999999999
Q ss_pred cccc-CChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecch-HHHHHHHH
Q 003924 179 CLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQ-EEKHAALL 256 (786)
Q Consensus 179 ~l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~-~~k~~~Ll 256 (786)
++++ .+|...+..++..++..+|+++||||++..+..++..++.+|..+.+.........+.+.+..+.. ..+...|.
T Consensus 246 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 325 (479)
T 3fmp_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALC 325 (479)
T ss_dssp HHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------------
T ss_pred HHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHH
Confidence 9987 689999999999999999999999999999999999999999988887766666666666666654 45666666
Q ss_pred HHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcc
Q 003924 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (786)
Q Consensus 257 ~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~ 336 (786)
.++... ...++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 326 ~~~~~~--~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~ 403 (479)
T 3fmp_B 326 NLYGAI--TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhc--cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCC
Confidence 666543 457899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEecCCCC------CHhHHHHHhhccccCCCccEEEEEEeccc-HHHHHHHHHHhcCCCCCCC
Q 003924 337 NVINWDFPP------KPKIFVHRVGRAARAGRTGTAFSFVTSED-MAYLLDLHLFLSKPIRAAP 393 (786)
Q Consensus 337 ~VI~~d~P~------s~~~~vQRvGR~gR~G~~G~ai~lv~~~e-~~~l~~l~~~l~~~~~~~p 393 (786)
+||+||+|. +...|+||+||+||+|+.|.|++|+++.+ ..++..++.+++..+...+
T Consensus 404 ~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~ 467 (479)
T 3fmp_B 404 VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLD 467 (479)
T ss_dssp ----------------------------------------------------------------
T ss_pred EEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECC
Confidence 999999994 56899999999999999999999999765 7788888877776655443
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=5.7e-53 Score=493.10 Aligned_cols=368 Identities=33% Similarity=0.518 Sum_probs=310.1
Q ss_pred CCccCCC----CCHHHHHHHHHCCCCCChHHHHHHHHHHH--cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC--CCCe
Q 003924 23 GGFESLN----LSPNVFRAIKRKGYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGV 94 (786)
Q Consensus 23 ~~f~~lg----Ls~~ll~~l~~~g~~~ptpiQ~~aip~il--~g~dvvl~a~TGSGKT~afllpile~L~~~~~--~~g~ 94 (786)
-+|+++. |++.++++|..+||..|||+|.++|+.++ .+++++++||||||||++|++|+++.+..... ..+.
T Consensus 68 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 147 (563)
T 3i5x_A 68 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 147 (563)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe
Confidence 3466664 99999999999999999999999999999 67899999999999999999999999876432 2356
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHcc----CCCCeEEEEEcCCChhHHHHHH-cCCCCEEEECcHHHHHHHhhccCCCCCce
Q 003924 95 RALILSPTRDLALQTLKFTKELGR----YTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (786)
Q Consensus 95 r~LIL~PtreLa~Q~~~~l~~l~~----~~~l~v~~l~gg~~~~~~~~~l-~~~~dIiV~Tpgrll~~l~~~~~l~l~~l 169 (786)
++|||+||++||.|+++.+..+.. ...+.+..++||.....+...+ ..+++|+|+||++|++++.......+..+
T Consensus 148 ~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~ 227 (563)
T 3i5x_A 148 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 227 (563)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccc
Confidence 899999999999999999988643 2357788999999888777666 45899999999999999876434567889
Q ss_pred eeEEeCCccccccCChHHHHHHHHhhccc-------CCceEEEeccCcHHHHHHHHhcCCCCcceeeccccc----cCCC
Q 003924 170 EYVVFDEADCLFGMGFAEQLHKILGQLSE-------NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK----ISPD 238 (786)
Q Consensus 170 ~~vV~DEah~l~~~gf~~~l~~Il~~l~~-------~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~----~~~~ 238 (786)
++|||||||++++++|...+..|+..++. .+|+++||||+|+.+..++..++.++..+.+..... ....
T Consensus 228 ~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (563)
T 3i5x_A 228 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHER 307 (563)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTT
T ss_pred eEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcccccc
Confidence 99999999999999999999999887643 678999999999999999999998887666543222 2223
Q ss_pred ceeeeeecch-HHHHHHHHHHHHHhc---cCCCcEEEEEcchhhHHHHHHHHHHc---CCCceeecCCCCHHHHHHHHHH
Q 003924 239 LKLAFFTLRQ-EEKHAALLYMIREHI---SSDQQTLIFVSTKHHVEFLNVLFREE---GLEPSVCYGDMDQDARKIHVSR 311 (786)
Q Consensus 239 l~~~~~~v~~-~~k~~~Ll~lL~~~~---~~~~k~IVF~~t~~~ae~l~~~L~~~---g~~v~~lhg~l~q~~R~~~l~~ 311 (786)
+.+.+..+.. ..+...++..+...+ ..+.++||||+|+.+++.++..|... ++.+..+||+|++.+|..+++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~ 387 (563)
T 3i5x_A 308 IDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKR 387 (563)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHH
T ss_pred CceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHH
Confidence 3444443332 233333333332221 45779999999999999999999887 8999999999999999999999
Q ss_pred HhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCC
Q 003924 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (786)
Q Consensus 312 F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~ 390 (786)
|++|+.+|||||+++++|||+|++++||+|++|.++..|+||+||+||+|+.|.|++|+++.|..++..++......+.
T Consensus 388 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~~~~~ 466 (563)
T 3i5x_A 388 FKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKNIVIA 466 (563)
T ss_dssp HHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHCCCCC
T ss_pred HhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887776554
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.3e-54 Score=482.06 Aligned_cols=367 Identities=32% Similarity=0.552 Sum_probs=187.9
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~ 100 (786)
...+|++++|++.++++|...||..|+|+|.++++.++.++++++.+|||||||++|++|+++.+... ..+.++||++
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~--~~~~~~lil~ 96 (394)
T 1fuu_A 19 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQALMLA 96 (394)
T ss_dssp CCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT--CCSCCEEEEC
T ss_pred ccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc--CCCCCEEEEc
Confidence 34679999999999999999999999999999999999999999999999999999999999887643 2466899999
Q ss_pred CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccc
Q 003924 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (786)
Q Consensus 101 PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l 180 (786)
||++|+.|+++.+..+....++.+..++|+.........+. +++|+|+||++|+..+.. ..+.+.++++|||||||++
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~vIiDEah~~ 174 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEM 174 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHh-CCcchhhCcEEEEEChHHh
Confidence 99999999999999999888999999999988776665554 689999999999998876 4577889999999999999
Q ss_pred ccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHH-HHHHHHHHH
Q 003924 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE-KHAALLYMI 259 (786)
Q Consensus 181 ~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~-k~~~Ll~lL 259 (786)
.+.+|...+..++..+++..|++++|||+++.+..+...++.+|..+.+.........+...+..+.... +...+..++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (394)
T 1fuu_A 175 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLY 254 (394)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-----------------------------
T ss_pred hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998887777665555555555555554443 555666666
Q ss_pred HHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeE
Q 003924 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (786)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI 339 (786)
... ..+++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 255 ~~~--~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi 332 (394)
T 1fuu_A 255 DSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 332 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcC--CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEE
Confidence 543 457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCC
Q 003924 340 NWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAP 393 (786)
Q Consensus 340 ~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p 393 (786)
+|++|.++..|+||+||+||.|+.|.|++|+++.|..++..++.+++..+...|
T Consensus 333 ~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 386 (394)
T 1fuu_A 333 NYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELP 386 (394)
T ss_dssp ------------------------------------------------------
T ss_pred EeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccC
Confidence 999999999999999999999999999999999999999999888877765544
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.3e-50 Score=437.91 Aligned_cols=335 Identities=35% Similarity=0.607 Sum_probs=291.4
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHH
Q 003924 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (786)
Q Consensus 30 Ls~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~ 109 (786)
|++.+.++|..+||..|+|+|.++++.++.++++++.+|||||||++|++|+++. +.++||++|+++|+.|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~--------~~~~liv~P~~~L~~q~ 72 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL--------GMKSLVVTPTRELTRQV 72 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH--------TCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh--------cCCEEEEeCCHHHHHHH
Confidence 6889999999999999999999999999999999999999999999999999864 55799999999999999
Q ss_pred HHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHH
Q 003924 110 LKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQL 189 (786)
Q Consensus 110 ~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l 189 (786)
++.+..++...++.+..++|+.....+...+. +++|+|+||++|.+++.. ..+.+.++++|||||||++.+++|...+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~~ 150 (337)
T 2z0m_A 73 ASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIVVATPGRLLDLWSK-GVIDLSSFEIVIIDEADLMFEMGFIDDI 150 (337)
T ss_dssp HHHHHHHTTTSCCCEEEECTTSCHHHHHHHHT-TCSEEEECHHHHHHHHHT-TSCCGGGCSEEEEESHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhcCCcEEEEECCcchHHHHhhcC-CCCEEEECHHHHHHHHHc-CCcchhhCcEEEEEChHHhhccccHHHH
Confidence 99999999888999999999998887776654 499999999999998876 4567889999999999999999999999
Q ss_pred HHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcE
Q 003924 190 HKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQT 269 (786)
Q Consensus 190 ~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~ 269 (786)
..++..++...+++++|||+|..+..+...++.++..+... .....+...+..+....+ ..+..+.. ..+.++
T Consensus 151 ~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~ 223 (337)
T 2z0m_A 151 KIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC---IGLANVEHKFVHVKDDWR--SKVQALRE--NKDKGV 223 (337)
T ss_dssp HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS---GGGGGEEEEEEECSSSSH--HHHHHHHT--CCCSSE
T ss_pred HHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc---cccCCceEEEEEeChHHH--HHHHHHHh--CCCCcE
Confidence 99999999999999999999999999999888887655332 223344555555544332 22344433 357899
Q ss_pred EEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhH
Q 003924 270 LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKI 349 (786)
Q Consensus 270 IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~ 349 (786)
||||+++.+++.++..|. .+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+|++|.++..
T Consensus 224 lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~ 299 (337)
T 2z0m_A 224 IVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRT 299 (337)
T ss_dssp EEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHH
T ss_pred EEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHH
Confidence 999999999999998886 5789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhc
Q 003924 350 FVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLS 386 (786)
Q Consensus 350 ~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~ 386 (786)
|+||+||+||.|+.|.|++|+. .|..++..++..++
T Consensus 300 ~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~~~~ 335 (337)
T 2z0m_A 300 YIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKKVSQ 335 (337)
T ss_dssp HHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC----
T ss_pred hhHhcCccccCCCCceEEEEEe-CcHHHHHHHHHHhc
Confidence 9999999999999999999999 88888888766554
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-49 Score=459.23 Aligned_cols=363 Identities=26% Similarity=0.484 Sum_probs=267.9
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC
Q 003924 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (786)
Q Consensus 24 ~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g--~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P 101 (786)
.|...++++.+++.|...||..|+|+|.++|+.++.+ +++++.+|||||||++|++|+++.+... ..+.++|||+|
T Consensus 120 ~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~--~~~~~vLvl~P 197 (508)
T 3fho_A 120 XXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS--VPKPQAICLAP 197 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT--CCSCCEEEECS
T ss_pred cccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC--CCCceEEEEEC
Confidence 3566789999999999999999999999999999998 9999999999999999999999988653 23568999999
Q ss_pred cHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 102 treLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
+++|+.|+++.+..++...++.+...+++..... ...+++|+|+||++|++++.. ..+.+.++++|||||||++.
T Consensus 198 ~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~-~~~~~~~~~lIIiDEaH~~~ 272 (508)
T 3fho_A 198 SRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKR-RQLDARDIKVFVLDEADNML 272 (508)
T ss_dssp CHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEECCHHHHT
T ss_pred cHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHc-CCccccCCCEEEEechhhhc
Confidence 9999999999999998888877777766554332 234789999999999998876 46778999999999999998
Q ss_pred c-CChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecc-hHHHHHHHHHHH
Q 003924 182 G-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHAALLYMI 259 (786)
Q Consensus 182 ~-~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~-~~~k~~~Ll~lL 259 (786)
+ .++...+..++..++...|++++|||+++.+..+...++.++..+.+.........+...+..+. ...+...+..++
T Consensus 273 ~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll 352 (508)
T 3fho_A 273 DQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELY 352 (508)
T ss_dssp TC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHH
Confidence 7 78999999999999999999999999999999999999999888777666555566666666553 445666666666
Q ss_pred HHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeE
Q 003924 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (786)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI 339 (786)
... .++++||||+++.+++.++..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 353 ~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI 430 (508)
T 3fho_A 353 GLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVV 430 (508)
T ss_dssp C-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEE
T ss_pred Hhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEE
Confidence 543 567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCC------CCHhHHHHHhhccccCCCccEEEEEEec-ccHHHHHHHHHHhcCCCCCCCCH
Q 003924 340 NWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTS-EDMAYLLDLHLFLSKPIRAAPSE 395 (786)
Q Consensus 340 ~~d~P------~s~~~~vQRvGR~gR~G~~G~ai~lv~~-~e~~~l~~l~~~l~~~~~~~p~~ 395 (786)
++++| .++..|+||+||+||.|+.|.|++|+.+ .+..++..++.++...+...|..
T Consensus 431 ~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~ 493 (508)
T 3fho_A 431 NYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTD 493 (508)
T ss_dssp C----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHHSCCCCC-----
T ss_pred EECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCc
Confidence 99999 7899999999999999999999999985 56777888888888877766543
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.4e-48 Score=436.72 Aligned_cols=325 Identities=21% Similarity=0.267 Sum_probs=267.2
Q ss_pred HHHHHHH-CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 003924 34 VFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (786)
Q Consensus 34 ll~~l~~-~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~ 112 (786)
+...+.+ .|| .|||+|.++||.++.|+++++.||||||||++|++|++..+. .+.++|||+||++|+.|+++.
T Consensus 10 ~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~-----~~~~~lil~Pt~~L~~q~~~~ 83 (414)
T 3oiy_A 10 FRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----KGKKSALVFPTVTLVKQTLER 83 (414)
T ss_dssp HHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT-----TTCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc-----CCCEEEEEECCHHHHHHHHHH
Confidence 3444444 477 899999999999999999999999999999999999887662 367899999999999999999
Q ss_pred HHHHccCCCCeEEEEEcCCCh---hHHHHHHcCC-CCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc-------
Q 003924 113 TKELGRYTDLRISLLVGGDSM---ESQFEELAQN-PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF------- 181 (786)
Q Consensus 113 l~~l~~~~~l~v~~l~gg~~~---~~~~~~l~~~-~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~------- 181 (786)
+..++. .++++..++||.+. ..++..+..+ ++|+|+||++|.+++.. +.+.++++|||||||++.
T Consensus 84 ~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~~~~~~iViDEaH~~~~~~~~~d 159 (414)
T 3oiy_A 84 LQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNID 159 (414)
T ss_dssp HHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH---HTTCCCSEEEESCHHHHHHCHHHHH
T ss_pred HHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH---hccccccEEEEeChHhhhhccchhh
Confidence 999988 88999999999988 5556666554 99999999999988764 667799999999998655
Q ss_pred ---c-CChHHH-HHHHHhhcc-----------cCCceEEEecc-CcHHHH-HHHHhcCCCCcceeeccccccCCCceeee
Q 003924 182 ---G-MGFAEQ-LHKILGQLS-----------ENRQTLLFSAT-LPSALA-EFAKAGLRDPHLVRLDVDTKISPDLKLAF 243 (786)
Q Consensus 182 ---~-~gf~~~-l~~Il~~l~-----------~~~q~ll~SAT-l~~~l~-~~~~~~l~~p~~i~~~~~~~~~~~l~~~~ 243 (786)
+ +||... +..++..++ ..+|+++|||| +|..+. .+....+. +.+.........+.+.+
T Consensus 160 ~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~~ 235 (414)
T 3oiy_A 160 TLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVR 235 (414)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCCCCCCSEEEEE
T ss_pred hHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccccccccchhee
Confidence 3 788888 888888887 88999999999 565433 22222221 22223333445566666
Q ss_pred eecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCce-eecCCCCHHHHHHHHHHHhcCCcEEEEE
Q 003924 244 FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPS-VCYGDMDQDARKIHVSRFRARKTMFLIV 322 (786)
Q Consensus 244 ~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~-~lhg~l~q~~R~~~l~~F~~g~~~ILVa 322 (786)
..+. +...|..++... +.++||||+++.+++.++..|...++.+. .+||. .|. ++.|++|+++||||
T Consensus 236 ~~~~---~~~~l~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 236 ISSR---SKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp ESSC---CHHHHHHHHHHH---CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEE
T ss_pred eccC---HHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEE
Confidence 6553 445566677663 48999999999999999999999999998 89984 344 99999999999999
Q ss_pred ----ecccccccCCCC-cceeEecCCC--CCHhHHHHHhhccccCC----CccEEEEEEecccHHHHHHHHHHhc
Q 003924 323 ----TDVAARGIDIPL-LDNVINWDFP--PKPKIFVHRVGRAARAG----RTGTAFSFVTSEDMAYLLDLHLFLS 386 (786)
Q Consensus 323 ----Tdv~arGlDIp~-v~~VI~~d~P--~s~~~~vQRvGR~gR~G----~~G~ai~lv~~~e~~~l~~l~~~l~ 386 (786)
|+++++|||+|+ +++||+||+| .++..|+||+||+||.| +.|.+++|+ .|...+..++.+++
T Consensus 304 t~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 304 VQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp ECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHH
T ss_pred ecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhc
Confidence 999999999999 9999999999 99999999999999987 589999999 67777777777666
No 17
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.8e-47 Score=447.59 Aligned_cols=342 Identities=18% Similarity=0.248 Sum_probs=281.3
Q ss_pred CccCCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 24 GFESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 24 ~f~~lgLs~~ll~~l~~-~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
.|.++++++.+...|.. .||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++.. +.++|||+|+
T Consensus 22 ~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~--------~g~~lVisP~ 93 (591)
T 2v1x_A 22 NKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS--------DGFTLVICPL 93 (591)
T ss_dssp CCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS--------SSEEEEECSC
T ss_pred ccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc--------CCcEEEEeCH
Confidence 34568999999999998 69999999999999999999999999999999999999999752 3479999999
Q ss_pred HHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHH---H---cCCCCEEEECcHHHH------HHHhhccCCCCCcee
Q 003924 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE---L---AQNPDIIIATPGRLM------HHLSEVEDMSLKSVE 170 (786)
Q Consensus 103 reLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~---l---~~~~dIiV~Tpgrll------~~l~~~~~l~l~~l~ 170 (786)
++|+.|+.+.+..+ ++.+..+.|+....+.... + ...++|+|+||++|. +.+.. .+.+..+.
T Consensus 94 ~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~--~~~~~~i~ 167 (591)
T 2v1x_A 94 ISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK--AYEARRFT 167 (591)
T ss_dssp HHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH--HHHTTCEE
T ss_pred HHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh--hhhccCCc
Confidence 99999999999887 4888889998877655432 2 467999999999874 23332 34577899
Q ss_pred eEEeCCccccccCC--hHHHHHH--HHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeec
Q 003924 171 YVVFDEADCLFGMG--FAEQLHK--ILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTL 246 (786)
Q Consensus 171 ~vV~DEah~l~~~g--f~~~l~~--Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v 246 (786)
+|||||||+++++| |...+.. ++....+..++++||||+++.+...+...+..+..+.+... ...+++...+...
T Consensus 168 ~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~-~~r~nl~~~v~~~ 246 (591)
T 2v1x_A 168 RIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS-FNRPNLYYEVRQK 246 (591)
T ss_dssp EEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC-CCCTTEEEEEEEC
T ss_pred EEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC-CCCcccEEEEEeC
Confidence 99999999999988 6555543 34444457999999999999888877777765544433322 2223333332222
Q ss_pred c--hHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEec
Q 003924 247 R--QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (786)
Q Consensus 247 ~--~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTd 324 (786)
. ...+...|+.++... ..+.++||||+|+.+++.++..|...|+.+..+||+|++.+|..+++.|+.|+.+|||||+
T Consensus 247 ~~~~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~ 325 (591)
T 2v1x_A 247 PSNTEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV 325 (591)
T ss_dssp CSSHHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred CCcHHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec
Confidence 1 234556666666542 2568999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHH
Q 003924 325 VAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (786)
Q Consensus 325 v~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (786)
++++|||+|++++||+|++|.++..|+||+||+||.|.+|.|++|+++.|...+..+
T Consensus 326 a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 326 AFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp TSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred hhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888766543
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=3.1e-47 Score=440.58 Aligned_cols=338 Identities=20% Similarity=0.325 Sum_probs=280.1
Q ss_pred CCccCCCCCHHHHHHHHH-CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC
Q 003924 23 GGFESLNLSPNVFRAIKR-KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (786)
Q Consensus 23 ~~f~~lgLs~~ll~~l~~-~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P 101 (786)
..|++|+|++.+...|.. .||..|+|+|.++|+.++.|+|+++.+|||||||++|++|++.. ...+|||+|
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~--------~g~~lvi~P 73 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL--------NGLTVVVSP 73 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS--------SSEEEEECS
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh--------CCCEEEECC
Confidence 479999999999999998 89999999999999999999999999999999999999999843 346999999
Q ss_pred cHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHH----HHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCc
Q 003924 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE----ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (786)
Q Consensus 102 treLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~----~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEa 177 (786)
+++|+.|+.+.+..+ ++.+..+.++.+...... ...+.++|+|+||++|...... ..+...++.+||||||
T Consensus 74 ~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~-~~l~~~~~~~vViDEa 148 (523)
T 1oyw_A 74 LISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFL-EHLAHWNPVLLAVDEA 148 (523)
T ss_dssp CHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHH-HHHTTSCEEEEEESSG
T ss_pred hHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHH-HHHhhCCCCEEEEeCc
Confidence 999999999998876 478888888877655432 2246799999999999633211 1344578999999999
Q ss_pred cccccCC--hHHHHH---HHHhhcccCCceEEEeccCcHHHHHHHH--hcCCCCcceeeccccccCCCceeeeeecchHH
Q 003924 178 DCLFGMG--FAEQLH---KILGQLSENRQTLLFSATLPSALAEFAK--AGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250 (786)
Q Consensus 178 h~l~~~g--f~~~l~---~Il~~l~~~~q~ll~SATl~~~l~~~~~--~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~ 250 (786)
|++.++| |...+. .++..+| ..+++++|||+++.+...+. ..+.+|..+... ...+++ .+.......
T Consensus 149 H~i~~~g~~fr~~~~~l~~l~~~~~-~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~---~~r~~l--~~~v~~~~~ 222 (523)
T 1oyw_A 149 HCISQWGHDFRPEYAALGQLRQRFP-TLPFMALTATADDTTRQDIVRLLGLNDPLIQISS---FDRPNI--RYMLMEKFK 222 (523)
T ss_dssp GGGCTTSSCCCHHHHGGGGHHHHCT-TSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECC---CCCTTE--EEEEEECSS
T ss_pred cccCcCCCccHHHHHHHHHHHHhCC-CCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCC---CCCCce--EEEEEeCCC
Confidence 9999887 544444 3444444 68999999999987655333 334555433221 112333 344444456
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeccccccc
Q 003924 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (786)
Q Consensus 251 k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGl 330 (786)
+...|+.++... .+.++||||+|+.+++.++..|...++.+..+||+|++.+|..+++.|++|+.+|||||+++++||
T Consensus 223 ~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~Gi 300 (523)
T 1oyw_A 223 PLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGI 300 (523)
T ss_dssp HHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTT
T ss_pred HHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCC
Confidence 777788888765 567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHH
Q 003924 331 DIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (786)
Q Consensus 331 DIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (786)
|+|++++||+|++|.++..|+||+||+||.|.+|.|++|+++.|...+..+
T Consensus 301 D~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~ 351 (523)
T 1oyw_A 301 NKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRC 351 (523)
T ss_dssp CCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred CccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988776654
No 19
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=3.2e-46 Score=439.29 Aligned_cols=323 Identities=19% Similarity=0.245 Sum_probs=261.5
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccC
Q 003924 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (786)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~ 119 (786)
.+|| .|||+|..++|.++.|+ |+.++||+|||++|++|++.... .|..++||+||++||.|+++++..+..+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL-----~g~~vlVltptreLA~qd~e~~~~l~~~ 150 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL-----TGKGVHVVTVNEYLASRDAEQMGKIFEF 150 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT-----TSSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH-----cCCCEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 4799 99999999999999998 99999999999999999985433 2567999999999999999999999999
Q ss_pred CCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-HHHHhhc-----cCCCCCceeeEEeCCccccc-cCC--------
Q 003924 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-GMG-------- 184 (786)
Q Consensus 120 ~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~~-----~~l~l~~l~~vV~DEah~l~-~~g-------- 184 (786)
+++++.+++||.+...+... .+++|+|+||++| ++++... ..+.+..+.++||||||+|+ +++
T Consensus 151 lgl~v~~i~gg~~~~~r~~~--~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg 228 (844)
T 1tf5_A 151 LGLTVGLNLNSMSKDEKREA--YAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISG 228 (844)
T ss_dssp TTCCEEECCTTSCHHHHHHH--HHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEE
T ss_pred cCCeEEEEeCCCCHHHHHHh--cCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcC
Confidence 99999999999886654433 4699999999999 6666542 24667899999999999988 664
Q ss_pred -------hHHHHHHHHhhcc---------cCCceE-----------------EEeccCcHH---HHHHHH--hcCC-CCc
Q 003924 185 -------FAEQLHKILGQLS---------ENRQTL-----------------LFSATLPSA---LAEFAK--AGLR-DPH 225 (786)
Q Consensus 185 -------f~~~l~~Il~~l~---------~~~q~l-----------------l~SATl~~~---l~~~~~--~~l~-~p~ 225 (786)
|...+..|+..++ ..+|++ |||||+|.. +...++ ..+. +..
T Consensus 229 ~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~d 308 (844)
T 1tf5_A 229 QAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVD 308 (844)
T ss_dssp EEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTT
T ss_pred CcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCc
Confidence 7789999999997 478888 999998753 332222 2222 111
Q ss_pred ce------------------------------------eecccccc----------------------------------
Q 003924 226 LV------------------------------------RLDVDTKI---------------------------------- 235 (786)
Q Consensus 226 ~i------------------------------------~~~~~~~~---------------------------------- 235 (786)
++ .+..+...
T Consensus 309 Yiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY 388 (844)
T 1tf5_A 309 YVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIY 388 (844)
T ss_dssp EEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred eEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHh
Confidence 11 00000000
Q ss_pred -------CC---Cc---eeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCH
Q 003924 236 -------SP---DL---KLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (786)
Q Consensus 236 -------~~---~l---~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q 302 (786)
++ .. ...++.+...+|...|+..+.+....+.++||||+|+..++.|+..|...|+++..+||++.+
T Consensus 389 ~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~ 468 (844)
T 1tf5_A 389 NMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHE 468 (844)
T ss_dssp CCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHH
T ss_pred CCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccH
Confidence 00 00 011344567789999999887654557889999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcCCcEEEEEecccccccCCC--------CcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEeccc
Q 003924 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIP--------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (786)
Q Consensus 303 ~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp--------~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e 374 (786)
.+|..+...|+.| .||||||+|+||+||+ ++.+||||++|.+...|+||+||+||+|.+|.+++|++..|
T Consensus 469 rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 469 REAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp HHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred HHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 8887776666655 6999999999999999 78899999999999999999999999999999999999876
No 20
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.4e-45 Score=425.01 Aligned_cols=333 Identities=19% Similarity=0.253 Sum_probs=209.0
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
++...|||+|.++|+.++.++++++.+|||||||++|++|+++.+.......+.++|||+||++|+.|+.+.+..+....
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 35568999999999999999999999999999999999999999876543347789999999999999999999998888
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCC-CCCceeeEEeCCccccccCChHHHHH-HHHhh-c-
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQLH-KILGQ-L- 196 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l-~l~~l~~vV~DEah~l~~~gf~~~l~-~Il~~-l- 196 (786)
++.+..++|+.....+...+..+++|+|+||++|.+++.. ..+ .+.++++|||||||++.+.++...+. .++.. +
T Consensus 83 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 83 GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED-GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFN 161 (556)
T ss_dssp TCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHS-SSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHC
T ss_pred CceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHh-CcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhc
Confidence 9999999999877776666667899999999999999876 345 78999999999999999887544332 22222 1
Q ss_pred --ccCCceEEEeccCcH-----------HHHHHHHhc------------------CCCCcceeeccccccCCCcee----
Q 003924 197 --SENRQTLLFSATLPS-----------ALAEFAKAG------------------LRDPHLVRLDVDTKISPDLKL---- 241 (786)
Q Consensus 197 --~~~~q~ll~SATl~~-----------~l~~~~~~~------------------l~~p~~i~~~~~~~~~~~l~~---- 241 (786)
.+..++|+||||++. .+..+.... ...|.................
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISN 241 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHH
Confidence 346899999999942 122222111 111111110000000000000
Q ss_pred ------------------------e--------ee---------------------------------------------
Q 003924 242 ------------------------A--------FF--------------------------------------------- 244 (786)
Q Consensus 242 ------------------------~--------~~--------------------------------------------- 244 (786)
. +.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 321 (556)
T 4a2p_A 242 LMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDA 321 (556)
T ss_dssp HHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 0 00
Q ss_pred ---------------------------------------------ecchHHHHHHHHHHHHHhc--cCCCcEEEEEcchh
Q 003924 245 ---------------------------------------------TLRQEEKHAALLYMIREHI--SSDQQTLIFVSTKH 277 (786)
Q Consensus 245 ---------------------------------------------~v~~~~k~~~Ll~lL~~~~--~~~~k~IVF~~t~~ 277 (786)
......|...|..+|.+.+ ..+.++||||+++.
T Consensus 322 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~ 401 (556)
T 4a2p_A 322 RIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRA 401 (556)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHH
Confidence 0001336666777776654 56789999999999
Q ss_pred hHHHHHHHHHHc------------CCCceeecCCCCHHHHHHHHHHHhc-CCcEEEEEecccccccCCCCcceeEecCCC
Q 003924 278 HVEFLNVLFREE------------GLEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDFP 344 (786)
Q Consensus 278 ~ae~l~~~L~~~------------g~~v~~lhg~l~q~~R~~~l~~F~~-g~~~ILVaTdv~arGlDIp~v~~VI~~d~P 344 (786)
+++.++..|... |.....+||+|++.+|..+++.|++ |.++|||||+++++|||+|++++||+||+|
T Consensus 402 ~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p 481 (556)
T 4a2p_A 402 LVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYS 481 (556)
T ss_dssp HHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------CEEEEETCC
T ss_pred HHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCC
Confidence 999999999875 4555667888999999999999999 999999999999999999999999999999
Q ss_pred CCHhHHHHHhhccccCCCccEEEEEEecccHH
Q 003924 345 PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (786)
Q Consensus 345 ~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~ 376 (786)
+++..|+||+|| ||. +.|.+++|+++.+..
T Consensus 482 ~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 482 GNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 511 (556)
T ss_dssp SCHHHHHHC----------CCEEEEESCHHHH
T ss_pred CCHHHHHHhcCC-CCC-CCceEEEEEeCcchH
Confidence 999999999999 998 889999999987654
No 21
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=2e-44 Score=447.09 Aligned_cols=321 Identities=20% Similarity=0.247 Sum_probs=266.4
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccC
Q 003924 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (786)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~ 119 (786)
..|| .|||+|.++||.++.|+|++++||||||||++|++|++..+. .+.++|||+||++||.|+++.+..|+ .
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~-----~~~~~Lil~PtreLa~Q~~~~l~~l~-~ 146 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR-----KGKKSALVFPTVTLVKQTLERLQKLA-D 146 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT-----TTCCEEEEESSHHHHHHHHHHHHTTS-C
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh-----cCCeEEEEechHHHHHHHHHHHHHhh-C
Confidence 3688 699999999999999999999999999999999988887763 46789999999999999999999988 7
Q ss_pred CCCeEEEEEcCCCh---hHHHHHHcCC-CCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc----------c-CC
Q 003924 120 TDLRISLLVGGDSM---ESQFEELAQN-PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF----------G-MG 184 (786)
Q Consensus 120 ~~l~v~~l~gg~~~---~~~~~~l~~~-~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~----------~-~g 184 (786)
.++++..++||.+. ..+...+..+ ++|+|+||++|++++.. +.+.++++|||||||++. + +|
T Consensus 147 ~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~g 223 (1104)
T 4ddu_A 147 EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFVDDVDAVLKASRNIDTLLMMVG 223 (1104)
T ss_dssp TTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEESCHHHHTTSSHHHHHHHHTSS
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEEeCCCccccccccchhhhHhcC
Confidence 88999999999988 6666777665 99999999999988864 667899999999997654 4 88
Q ss_pred hHHH-HHHHHhhcc-----------cCCceEEEecc-CcHHHHH-HHHhcCCCCcceeeccccccCCCceeeeeecchHH
Q 003924 185 FAEQ-LHKILGQLS-----------ENRQTLLFSAT-LPSALAE-FAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEE 250 (786)
Q Consensus 185 f~~~-l~~Il~~l~-----------~~~q~ll~SAT-l~~~l~~-~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~ 250 (786)
|... +..++..++ ..+|+++|||| .|..+.. +....+. +.+........++.+.+..+ .
T Consensus 224 f~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~~~~~~i~~~~~~~---~ 296 (1104)
T 4ddu_A 224 IPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLVSVARNITHVRISS---R 296 (1104)
T ss_dssp CCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCCCCCCCEEEEEESC---C
T ss_pred CCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCCCCcCCceeEEEec---C
Confidence 8888 899999888 88999999999 5554432 2333222 33344444455666766666 3
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCce-eecCCCCHHHHHHHHHHHhcCCcEEEEE----ecc
Q 003924 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPS-VCYGDMDQDARKIHVSRFRARKTMFLIV----TDV 325 (786)
Q Consensus 251 k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~-~lhg~l~q~~R~~~l~~F~~g~~~ILVa----Tdv 325 (786)
+...|..+|... +.++||||+++..++.++..|...|+.+. .+||. |.. ++.|++|+.+|||| |++
T Consensus 297 k~~~L~~ll~~~---~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Tdv 367 (1104)
T 4ddu_A 297 SKEKLVELLEIF---RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGK 367 (1104)
T ss_dssp CHHHHHHHHHHH---CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHH
T ss_pred HHHHHHHHHHhc---CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCe
Confidence 455667777663 48999999999999999999999999998 99992 555 99999999999999 999
Q ss_pred cccccCCCC-cceeEecCCCC-----------------------------------------------------------
Q 003924 326 AARGIDIPL-LDNVINWDFPP----------------------------------------------------------- 345 (786)
Q Consensus 326 ~arGlDIp~-v~~VI~~d~P~----------------------------------------------------------- 345 (786)
+++|||+|+ |++|||||+|.
T Consensus 368 larGIDip~~V~~VI~~d~P~~~~Sle~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~ 447 (1104)
T 4ddu_A 368 LTRGVDLPERIKYVIFWGTPSMRFSLELDKAPRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRG 447 (1104)
T ss_dssp HCCSCCCTTTCCEEEEESCCEEEEECSSSSCCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCS
T ss_pred eEecCcCCCCCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccce
Confidence 999999999 99999999998
Q ss_pred -------------CHhHHHHHhhccccCCCcc--EEEEEEecccHHHHHHHHHHhc
Q 003924 346 -------------KPKIFVHRVGRAARAGRTG--TAFSFVTSEDMAYLLDLHLFLS 386 (786)
Q Consensus 346 -------------s~~~~vQRvGR~gR~G~~G--~ai~lv~~~e~~~l~~l~~~l~ 386 (786)
++.+|+||+|||||.|..| .+++++..+|...+..|...+.
T Consensus 448 l~~~~~~~~~~~pd~~tYihr~GRtgR~~~gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 448 VVVKDEDLELIIPDVYTYIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp SEEETTTTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred EEecCCeeEEEecChhhhhcccCchhcccCCCcccceEEEEEecHHHHHHHHHHHh
Confidence 8889999999999965433 4566666688888888877664
No 22
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.2e-44 Score=416.11 Aligned_cols=333 Identities=21% Similarity=0.237 Sum_probs=236.0
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeE
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v 124 (786)
.|||+|.++++.++.|+++++.+|||||||++|++|+++.+.......+.++|||+||++|+.|+++.+..+....++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 79999999999999999999999999999999999999998875433477899999999999999999999988889999
Q ss_pred EEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCC-CCCceeeEEeCCccccccCChHHH-HHHHHhhc-----c
Q 003924 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQ-LHKILGQL-----S 197 (786)
Q Consensus 125 ~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l-~l~~l~~vV~DEah~l~~~gf~~~-l~~Il~~l-----~ 197 (786)
..++|+.....+...+..+++|+|+||++|.+++... .+ .+.++++|||||||++.+.+.... +..++... .
T Consensus 84 ~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNG-AIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRD 162 (555)
T ss_dssp EEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTS-SSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCS
T ss_pred EEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcC-cccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccC
Confidence 9999999877766666678999999999999998763 44 788999999999999998763322 22333322 2
Q ss_pred cCCceEEEeccCcH-----------HHHHHHHhcCCCCcceeeccc------cccCCCceeeeee---------------
Q 003924 198 ENRQTLLFSATLPS-----------ALAEFAKAGLRDPHLVRLDVD------TKISPDLKLAFFT--------------- 245 (786)
Q Consensus 198 ~~~q~ll~SATl~~-----------~l~~~~~~~l~~p~~i~~~~~------~~~~~~l~~~~~~--------------- 245 (786)
+..++++||||++. .+..+.. .+..+.+...... ....+......+.
T Consensus 163 ~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
T 3tbk_A 163 PLPQVVGLTASVGVGDAKTAEEAMQHICKLCA-ALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLM 241 (555)
T ss_dssp CCCEEEEEESCCCCTTCCSHHHHHHHHHHHHH-HTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHH
T ss_pred CCCeEEEEecCcccCccccHHHHHHHHHHHHH-hcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHH
Confidence 45799999999943 1111211 1111111000000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 003924 246 -------------------------------------------------------------------------------- 245 (786)
Q Consensus 246 -------------------------------------------------------------------------------- 245 (786)
T Consensus 242 ~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 321 (555)
T 3tbk_A 242 KETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQ 321 (555)
T ss_dssp HHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence
Q ss_pred ---------------------------------------------cchHHHHHHHHHHHHHhc--cCCCcEEEEEcchhh
Q 003924 246 ---------------------------------------------LRQEEKHAALLYMIREHI--SSDQQTLIFVSTKHH 278 (786)
Q Consensus 246 ---------------------------------------------v~~~~k~~~Ll~lL~~~~--~~~~k~IVF~~t~~~ 278 (786)
.....|...|..+|.+.+ ..+.++||||+++.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~ 401 (555)
T 3tbk_A 322 MTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRAL 401 (555)
T ss_dssp HHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHH
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHH
Confidence 001345666666776543 345899999999999
Q ss_pred HHHHHHHHHHcC------------CCceeecCCCCHHHHHHHHHHHhc-CCcEEEEEecccccccCCCCcceeEecCCCC
Q 003924 279 VEFLNVLFREEG------------LEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDFPP 345 (786)
Q Consensus 279 ae~l~~~L~~~g------------~~v~~lhg~l~q~~R~~~l~~F~~-g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~ 345 (786)
++.++..|...+ .....+||+|++.+|..+++.|++ |.++|||||+++++|||+|++++||+||+|+
T Consensus 402 ~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~ 481 (555)
T 3tbk_A 402 VDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVG 481 (555)
T ss_dssp HHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCS
T ss_pred HHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCC
Confidence 999999999864 344455669999999999999999 9999999999999999999999999999999
Q ss_pred CHhHHHHHhhccccCCCccEEEEEEecccHHHHHHH
Q 003924 346 KPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDL 381 (786)
Q Consensus 346 s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l 381 (786)
++..|+||+|| ||. +.|.+++|+++.+......+
T Consensus 482 s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 482 NVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp SCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHHHH
T ss_pred CHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHHHH
Confidence 99999999999 998 89999999999877655443
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3e-44 Score=429.68 Aligned_cols=343 Identities=21% Similarity=0.236 Sum_probs=229.2
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003924 35 FRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (786)
Q Consensus 35 l~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~ 114 (786)
..++..+||..|+|+|.++++.++.|+++++++|||||||++|++|+++.+.......+.++|||+||++|+.|+.+.+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~ 82 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFS 82 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999999999999998876533334689999999999999999999
Q ss_pred HHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCC-CCCceeeEEeCCccccccCCh-HHHHHHH
Q 003924 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGF-AEQLHKI 192 (786)
Q Consensus 115 ~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l-~l~~l~~vV~DEah~l~~~gf-~~~l~~I 192 (786)
.++...++.+..++|+.....++..+..+++|+|+||++|++++... .+ .+.++++|||||||++.+... ...+..+
T Consensus 83 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~-~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~ 161 (696)
T 2ykg_A 83 KYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKG-TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNY 161 (696)
T ss_dssp HHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTT-SSCCGGGCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred HHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcC-cccccccccEEEEeCCCcccCcccHHHHHHHH
Confidence 99888899999999998776666666668999999999999998863 44 688999999999999886542 2222222
Q ss_pred Hhh-----cccCCceEEEeccCc--------HHHHHH-------------------------------------------
Q 003924 193 LGQ-----LSENRQTLLFSATLP--------SALAEF------------------------------------------- 216 (786)
Q Consensus 193 l~~-----l~~~~q~ll~SATl~--------~~l~~~------------------------------------------- 216 (786)
+.. .+...++|++|||+. ..+..+
T Consensus 162 l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 241 (696)
T 2ykg_A 162 LDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDK 241 (696)
T ss_dssp HHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCH
T ss_pred HHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCCh
Confidence 222 245789999999996 111111
Q ss_pred ---------------HHhcCCCCcceeecccc------------------------------------------------
Q 003924 217 ---------------AKAGLRDPHLVRLDVDT------------------------------------------------ 233 (786)
Q Consensus 217 ---------------~~~~l~~p~~i~~~~~~------------------------------------------------ 233 (786)
+..++.++..+......
T Consensus 242 fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 321 (696)
T 2ykg_A 242 FKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYND 321 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhH
Confidence 11111111110000000
Q ss_pred --------------------------ccCCCceeeeee-------------c---chHHHHHHHHHHHHHhc--cCCCcE
Q 003924 234 --------------------------KISPDLKLAFFT-------------L---RQEEKHAALLYMIREHI--SSDQQT 269 (786)
Q Consensus 234 --------------------------~~~~~l~~~~~~-------------v---~~~~k~~~Ll~lL~~~~--~~~~k~ 269 (786)
.....+.+.+.. . ....+...|..+|.+.. ..+.++
T Consensus 322 ~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~ 401 (696)
T 2ykg_A 322 ALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETIT 401 (696)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCE
T ss_pred HHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcE
Confidence 000000000000 0 13356777777777653 356789
Q ss_pred EEEEcchhhHHHHHHHHHHcC----CCceee--------cCCCCHHHHHHHHHHHhc-CCcEEEEEecccccccCCCCcc
Q 003924 270 LIFVSTKHHVEFLNVLFREEG----LEPSVC--------YGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLD 336 (786)
Q Consensus 270 IVF~~t~~~ae~l~~~L~~~g----~~v~~l--------hg~l~q~~R~~~l~~F~~-g~~~ILVaTdv~arGlDIp~v~ 336 (786)
||||+++..++.++..|...+ +.+..+ ||+|++.+|..+++.|++ |+++|||||+++++|||+|+++
T Consensus 402 IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~ 481 (696)
T 2ykg_A 402 ILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCN 481 (696)
T ss_dssp EEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCCS
T ss_pred EEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCC
Confidence 999999999999999999987 888888 459999999999999998 9999999999999999999999
Q ss_pred eeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHH
Q 003924 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLD 380 (786)
Q Consensus 337 ~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~ 380 (786)
+||+||+|.++..|+||+|| ||. +.|.++.|++..+......
T Consensus 482 ~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~ 523 (696)
T 2ykg_A 482 LVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQ 523 (696)
T ss_dssp EEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHH
Confidence 99999999999999999999 998 7899999999887654443
No 24
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.3e-44 Score=422.25 Aligned_cols=342 Identities=20% Similarity=0.265 Sum_probs=244.4
Q ss_pred CCCCCccCCCCCHHHHHHHHH-----CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCe
Q 003924 20 SKSGGFESLNLSPNVFRAIKR-----KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGV 94 (786)
Q Consensus 20 ~~~~~f~~lgLs~~ll~~l~~-----~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~ 94 (786)
.++.+++++ | ++.+..+.. +|. .|+|+|..++|.++.|+ |+.++||||||++|++|++.... .|.
T Consensus 47 ~~g~~ld~~-l-peafA~vrea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l-----~g~ 116 (853)
T 2fsf_A 47 EKGEVLENL-I-PEAFAVVREASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL-----TGK 116 (853)
T ss_dssp HTTCCHHHH-H-HHHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT-----TSS
T ss_pred HcCCChhhh-h-HHHHHHHHHHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH-----cCC
Confidence 344456554 3 333433333 575 89999999999999998 99999999999999999986543 256
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-HHHHhhc-----cCCCCCc
Q 003924 95 RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKS 168 (786)
Q Consensus 95 r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~~-----~~l~l~~ 168 (786)
+++||+||++||.|+++++..++.++++++.+++||.+.... .+..+++|+|||||+| ++++... ..+.+..
T Consensus 117 ~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r--~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~ 194 (853)
T 2fsf_A 117 GVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAK--REAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRK 194 (853)
T ss_dssp CCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHH--HHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCS
T ss_pred cEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHH--HHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccC
Confidence 799999999999999999999999999999999999886533 3344799999999999 7887752 1356789
Q ss_pred eeeEEeCCccccc-cC---------------ChHHHHHHHHhhccc--------------------CCceE---------
Q 003924 169 VEYVVFDEADCLF-GM---------------GFAEQLHKILGQLSE--------------------NRQTL--------- 203 (786)
Q Consensus 169 l~~vV~DEah~l~-~~---------------gf~~~l~~Il~~l~~--------------------~~q~l--------- 203 (786)
+.++|+||||+|+ ++ +|...+..|+..++. .+|++
T Consensus 195 l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~ 274 (853)
T 2fsf_A 195 LHYALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLI 274 (853)
T ss_dssp CCEEEESCHHHHTTTTTTCEEEEEEC------------------------------------------------------
T ss_pred CcEEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHH
Confidence 9999999999998 54 467888889888874 56664
Q ss_pred ---------------EEeccCcHHHHHH---HH--hcCC--------CC-----------------------------cc
Q 003924 204 ---------------LFSATLPSALAEF---AK--AGLR--------DP-----------------------------HL 226 (786)
Q Consensus 204 ---------------l~SATl~~~l~~~---~~--~~l~--------~p-----------------------------~~ 226 (786)
|||||.|..+..+ ++ ..+. ++ ..
T Consensus 275 e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~ 354 (853)
T 2fsf_A 275 EELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEG 354 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhccc
Confidence 8999976422221 10 1110 11 11
Q ss_pred eeeccccccCCCce-----------------------------------------------eeeeecchHHHHHHHHHHH
Q 003924 227 VRLDVDTKISPDLK-----------------------------------------------LAFFTLRQEEKHAALLYMI 259 (786)
Q Consensus 227 i~~~~~~~~~~~l~-----------------------------------------------~~~~~v~~~~k~~~Ll~lL 259 (786)
+.+..+......+. ..++.+...+|...|...+
T Consensus 355 v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i 434 (853)
T 2fsf_A 355 VQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDI 434 (853)
T ss_dssp --CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHH
T ss_pred ceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHH
Confidence 11111111111111 1124456788999999998
Q ss_pred HHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCc----
Q 003924 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLL---- 335 (786)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v---- 335 (786)
.+....+.++||||+|+..++.++..|...|+++.++||++.+.++..+...|+.| .|+||||+|+||+||+..
T Consensus 435 ~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~ 512 (853)
T 2fsf_A 435 KERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQ 512 (853)
T ss_dssp HHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHH
T ss_pred HHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchH
Confidence 77656678999999999999999999999999999999999988888888889888 599999999999999974
Q ss_pred ---------------------------------ceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccH
Q 003924 336 ---------------------------------DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (786)
Q Consensus 336 ---------------------------------~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~ 375 (786)
.+||+|++|.+...|+||+||+||+|.+|.+++|++..|.
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 513 AEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred hhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999998763
No 25
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=4.4e-43 Score=421.15 Aligned_cols=337 Identities=22% Similarity=0.279 Sum_probs=265.4
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~-il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~ 100 (786)
..+|++|+|++.+.+.+...||..|+|+|.++++. ++.+++++++||||||||++|.+|+++.+... +.++||++
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~il~i~ 82 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN----GGKAIYVT 82 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS----CSEEEEEC
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC----CCeEEEEe
Confidence 45899999999999999999999999999999999 78899999999999999999999999887643 56899999
Q ss_pred CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccc
Q 003924 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (786)
Q Consensus 101 PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l 180 (786)
|+++||.|+++.++.+.. .++.+..++|+...... ...+++|+|+||++|..++.. ....+.++++|||||||.+
T Consensus 83 P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l 157 (715)
T 2va8_A 83 PLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA---WLKNYDIIITTYEKLDSLWRH-RPEWLNEVNYFVLDELHYL 157 (715)
T ss_dssp SCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG---GGGGCSEEEECHHHHHHHHHH-CCGGGGGEEEEEECSGGGG
T ss_pred CcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh---hcCCCCEEEEcHHHHHHHHhC-ChhHhhccCEEEEechhhc
Confidence 999999999998865543 47899999987665432 124799999999999998876 3344889999999999999
Q ss_pred ccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCcee------------eeeecch
Q 003924 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL------------AFFTLRQ 248 (786)
Q Consensus 181 ~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~------------~~~~v~~ 248 (786)
.+.++...+..++..++ ..|+|++|||+++. ..++.. +..+. +.... ...+ +.. .+.....
T Consensus 158 ~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~~-l~~~~-~~~~~--r~~~-l~~~~~~~~~~~~~~~~~~~~~ 230 (715)
T 2va8_A 158 NDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAKW-LGAEP-VATNW--RPVP-LIEGVIYPERKKKEYNVIFKDN 230 (715)
T ss_dssp GCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHHH-HTCEE-EECCC--CSSC-EEEEEEEECSSTTEEEEEETTS
T ss_pred CCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHHH-hCCCc-cCCCC--CCCC-ceEEEEecCCcccceeeecCcc
Confidence 98889999999988887 89999999999752 334332 22221 11110 0000 000 0111110
Q ss_pred ----HHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcC----------------------------------
Q 003924 249 ----EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEG---------------------------------- 290 (786)
Q Consensus 249 ----~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g---------------------------------- 290 (786)
......+...+.+.+..++++||||+++.+++.++..|....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 231 TTKKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp CEEEEESSSHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hhhhcccchHHHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 000122334444444567899999999999999999998642
Q ss_pred --CCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEe----cC-------CCCCHhHHHHHhhcc
Q 003924 291 --LEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD-------FPPKPKIFVHRVGRA 357 (786)
Q Consensus 291 --~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~----~d-------~P~s~~~~vQRvGR~ 357 (786)
..+.++||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+...|.||+||+
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRa 390 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRA 390 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTB
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhc
Confidence 24889999999999999999999999999999999999999999999999 99 899999999999999
Q ss_pred ccCCC--ccEEEEEEeccc
Q 003924 358 ARAGR--TGTAFSFVTSED 374 (786)
Q Consensus 358 gR~G~--~G~ai~lv~~~e 374 (786)
||.|. .|.||.++++.+
T Consensus 391 GR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 391 GRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp CCTTTCSCEEEEEECSCGG
T ss_pred CCCCCCCCceEEEEeCCch
Confidence 99884 799999998876
No 26
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=7.3e-44 Score=428.15 Aligned_cols=334 Identities=21% Similarity=0.266 Sum_probs=269.7
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHHHHHH-HHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 24 ~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~-il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
+|++++|++.+.+.+...||..|+|+|.++++. ++.+++++++||||||||++|.+|+++.+... +.++||++|+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~----~~~~l~i~P~ 77 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ----GGKAVYIVPL 77 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH----CSEEEEECSS
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC----CCEEEEEcCc
Confidence 699999999999999999999999999999998 88999999999999999999999999888753 5789999999
Q ss_pred HHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc
Q 003924 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (786)
Q Consensus 103 reLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~ 182 (786)
++|+.|+++.+..+.. .++++..++|+...... ....++|+|+||+++..++.. ....+.++++|||||||.+.+
T Consensus 78 raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~~~~-~~~~l~~~~~vIiDE~H~l~~ 152 (720)
T 2zj8_A 78 KALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE---WLGKYDIIIATAEKFDSLLRH-GSSWIKDVKILVADEIHLIGS 152 (720)
T ss_dssp GGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG---GGGGCSEEEECHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGC
T ss_pred HHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc---ccCCCCEEEECHHHHHHHHHc-ChhhhhcCCEEEEECCcccCC
Confidence 9999999998876654 37899999997665432 234799999999999988876 344588999999999999999
Q ss_pred CChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeee------eecc-----hHHH
Q 003924 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAF------FTLR-----QEEK 251 (786)
Q Consensus 183 ~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~------~~v~-----~~~k 251 (786)
.++...+..++..++...|+|++|||+++. ..+.. ++..+. +..+. ...+ +...+ .... ....
T Consensus 153 ~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~~-~l~~~~-~~~~~--rp~~-l~~~~~~~~~~~~~~~~~~~~~~~ 226 (720)
T 2zj8_A 153 RDRGATLEVILAHMLGKAQIIGLSATIGNP-EELAE-WLNAEL-IVSDW--RPVK-LRRGVFYQGFVTWEDGSIDRFSSW 226 (720)
T ss_dssp TTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHHH-HTTEEE-EECCC--CSSE-EEEEEEETTEEEETTSCEEECSST
T ss_pred CcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHHH-HhCCcc-cCCCC--CCCc-ceEEEEeCCeeeccccchhhhhHH
Confidence 889999999999888789999999999753 33433 333211 11110 0000 11100 0111 1122
Q ss_pred HHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc---------------------------------CCCceeecC
Q 003924 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE---------------------------------GLEPSVCYG 298 (786)
Q Consensus 252 ~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~---------------------------------g~~v~~lhg 298 (786)
.. ++.+.+..++++||||+++..++.++..|... ...+.++||
T Consensus 227 ~~----~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~ 302 (720)
T 2zj8_A 227 EE----LVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHA 302 (720)
T ss_dssp TH----HHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECT
T ss_pred HH----HHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecC
Confidence 22 33333346789999999999999999988753 124889999
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEe----cC----CCCCHhHHHHHhhccccCC--CccEEEE
Q 003924 299 DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD----FPPKPKIFVHRVGRAARAG--RTGTAFS 368 (786)
Q Consensus 299 ~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~----~d----~P~s~~~~vQRvGR~gR~G--~~G~ai~ 368 (786)
+|++.+|..+++.|++|.++|||||+++++|||+|.+++||+ || .|.+...|+||+||+||.| ..|.|++
T Consensus 303 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 382 (720)
T 2zj8_A 303 GLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGII 382 (720)
T ss_dssp TSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEE
Confidence 999999999999999999999999999999999999999998 76 5899999999999999998 4799999
Q ss_pred EEecccHH
Q 003924 369 FVTSEDMA 376 (786)
Q Consensus 369 lv~~~e~~ 376 (786)
++++.+..
T Consensus 383 l~~~~~~~ 390 (720)
T 2zj8_A 383 VSTSDDPR 390 (720)
T ss_dssp ECSSSCHH
T ss_pred EecCccHH
Confidence 99998844
No 27
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-43 Score=440.45 Aligned_cols=338 Identities=17% Similarity=0.202 Sum_probs=268.8
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 23 ~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
..|..+++++.+...+...++..|||+|.++|+.++.|++++++|+||||||++|++|++..+.. +.++||++||
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~-----g~rvlvl~Pt 236 (1108)
T 3l9o_A 162 PNYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----KQRVIYTSPI 236 (1108)
T ss_dssp SCCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT-----TCEEEEEESS
T ss_pred CCcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc-----CCeEEEEcCc
Confidence 46788888888888887778879999999999999999999999999999999999999988753 6789999999
Q ss_pred HHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc
Q 003924 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (786)
Q Consensus 103 reLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~ 182 (786)
++|+.|+++.+..+.. .+.+++|+.+ +..+++|+|+||++|.+++.. ....+.++++|||||||++.+
T Consensus 237 raLa~Q~~~~l~~~~~----~VglltGd~~-------~~~~~~IlV~Tpe~L~~~L~~-~~~~l~~l~lVVIDEaH~l~d 304 (1108)
T 3l9o_A 237 KALSNQKYRELLAEFG----DVGLMTGDIT-------INPDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRD 304 (1108)
T ss_dssp HHHHHHHHHHHHHHTS----SEEEECSSCB-------CCCSCSEEEEEHHHHHHHHHH-CSSHHHHEEEEEEETGGGTTS
T ss_pred HHHHHHHHHHHHHHhC----CccEEeCccc-------cCCCCCEEEeChHHHHHHHHc-CccccccCCEEEEhhhhhccc
Confidence 9999999999988763 5777888776 335699999999999999887 345588999999999999999
Q ss_pred CChHHHHHHHHhhcccCCceEEEeccCcHH--HHHHHHhcCCCCcceeeccccccCCCceeeeee---------cch---
Q 003924 183 MGFAEQLHKILGQLSENRQTLLFSATLPSA--LAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT---------LRQ--- 248 (786)
Q Consensus 183 ~gf~~~l~~Il~~l~~~~q~ll~SATl~~~--l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~---------v~~--- 248 (786)
++|...+..++..++...|+|+||||+|+. +..++......|..+....... ..+...++. +..
T Consensus 305 ~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp--~pl~~~~~~~~~~~~~~~vd~~~~ 382 (1108)
T 3l9o_A 305 KERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRP--TPLQHYLFPAHGDGIYLVVDEKST 382 (1108)
T ss_dssp HHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCS--SCEEEEEEETTSSCCEEEEETTTE
T ss_pred cchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCc--ccceEEEeecCCcceeeeeccccc
Confidence 999999999999999999999999999764 5566666666654443322111 111111110 000
Q ss_pred -------------------------------------------HHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHH
Q 003924 249 -------------------------------------------EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVL 285 (786)
Q Consensus 249 -------------------------------------------~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~ 285 (786)
......++..+... ...++||||+++..|+.++..
T Consensus 383 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~--~~~~vIVF~~sr~~~e~la~~ 460 (1108)
T 3l9o_A 383 FREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYNPVIVFSFSKRDCEELALK 460 (1108)
T ss_dssp ECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHT--TCCCEEEEESCHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhc--CCCCEEEEeCcHHHHHHHHHH
Confidence 12222333333332 456999999999999999988
Q ss_pred HHHcCCC---------------------------------------ceeecCCCCHHHHHHHHHHHhcCCcEEEEEeccc
Q 003924 286 FREEGLE---------------------------------------PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVA 326 (786)
Q Consensus 286 L~~~g~~---------------------------------------v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~ 326 (786)
|...++. +.++||+|++..|..++..|++|.++|||||+++
T Consensus 461 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl 540 (1108)
T 3l9o_A 461 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 540 (1108)
T ss_dssp TCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH
Confidence 8543222 6889999999999999999999999999999999
Q ss_pred ccccCCCCcceeEecCCC--------CCHhHHHHHhhccccCC--CccEEEEEEecc-cHHHHHHH
Q 003924 327 ARGIDIPLLDNVINWDFP--------PKPKIFVHRVGRAARAG--RTGTAFSFVTSE-DMAYLLDL 381 (786)
Q Consensus 327 arGlDIp~v~~VI~~d~P--------~s~~~~vQRvGR~gR~G--~~G~ai~lv~~~-e~~~l~~l 381 (786)
++|||+|.+++||+++.| .++..|+||+||+||.| ..|.||+++++. +...+..+
T Consensus 541 a~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l 606 (1108)
T 3l9o_A 541 SIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 606 (1108)
T ss_dssp CSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHH
T ss_pred hcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHH
Confidence 999999999999987763 47778999999999999 679999998876 33444443
No 28
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=2.8e-43 Score=413.33 Aligned_cols=324 Identities=20% Similarity=0.255 Sum_probs=263.2
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccC
Q 003924 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (786)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~ 119 (786)
.+|+ .|||+|..++|.++.|+ |+.++||+|||++|++|++..... |.+++||+||++||.|.++++..+..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~-----g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA-----GNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT-----TSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh-----CCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 3799 99999999999999998 999999999999999999754432 457999999999999999999999999
Q ss_pred CCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-HHHHhhc-----cCCCCCceeeEEeCCccccc-c----------
Q 003924 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLF-G---------- 182 (786)
Q Consensus 120 ~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~~-----~~l~l~~l~~vV~DEah~l~-~---------- 182 (786)
+++++.+++||.+...... ..+++|+|+||++| ++++... ..+.+..+.++||||||+|+ +
T Consensus 179 lGLsv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg 256 (922)
T 1nkt_A 179 LGLQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISG 256 (922)
T ss_dssp TTCCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEE
T ss_pred cCCeEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecC
Confidence 9999999999988654433 33699999999999 7877652 24667889999999999998 3
Q ss_pred -----CChHHHHHHHHhhcc---------cCCceE-----------------EEeccCcH---HHHHHHHh--cCC-C--
Q 003924 183 -----MGFAEQLHKILGQLS---------ENRQTL-----------------LFSATLPS---ALAEFAKA--GLR-D-- 223 (786)
Q Consensus 183 -----~gf~~~l~~Il~~l~---------~~~q~l-----------------l~SATl~~---~l~~~~~~--~l~-~-- 223 (786)
++|...+..|+..++ +.+|++ |||||.+. .+...+++ .+. +
T Consensus 257 ~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~d 336 (922)
T 1nkt_A 257 PADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKD 336 (922)
T ss_dssp ECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTT
T ss_pred CCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccc
Confidence 368899999999998 678998 99999875 33322222 221 1
Q ss_pred -----Ccceeecc-----------------------------ccccCCCce-----------------------------
Q 003924 224 -----PHLVRLDV-----------------------------DTKISPDLK----------------------------- 240 (786)
Q Consensus 224 -----p~~i~~~~-----------------------------~~~~~~~l~----------------------------- 240 (786)
+.++.++. +......+.
T Consensus 337 YiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY 416 (922)
T 1nkt_A 337 YIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIY 416 (922)
T ss_dssp EEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHH
T ss_pred eeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHh
Confidence 11111110 000000000
Q ss_pred ------------------eeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCH
Q 003924 241 ------------------LAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQ 302 (786)
Q Consensus 241 ------------------~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q 302 (786)
..++.+...+|...|+..+.+....+.++||||+|+..++.|+..|...|+++.+|||++.+
T Consensus 417 ~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~ 496 (922)
T 1nkt_A 417 KLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHE 496 (922)
T ss_dssp CCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHH
T ss_pred CCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhH
Confidence 11234566789999999887765667899999999999999999999999999999999988
Q ss_pred HHHHHHHHHHhcCCcEEEEEecccccccCCCCc-----------------------------------------------
Q 003924 303 DARKIHVSRFRARKTMFLIVTDVAARGIDIPLL----------------------------------------------- 335 (786)
Q Consensus 303 ~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v----------------------------------------------- 335 (786)
.++..+...|+.| .|+||||+|+||+||+.+
T Consensus 497 rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 574 (922)
T 1nkt_A 497 QEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEV 574 (922)
T ss_dssp HHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 8888888888877 599999999999999975
Q ss_pred -----ceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccH
Q 003924 336 -----DNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (786)
Q Consensus 336 -----~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~ 375 (786)
.+||+|++|.+...|+||+||+||+|.+|.+++|++.+|.
T Consensus 575 ~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 575 IEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp HHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998764
No 29
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=4.4e-43 Score=425.75 Aligned_cols=335 Identities=19% Similarity=0.236 Sum_probs=216.2
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccC
Q 003924 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (786)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~ 119 (786)
.+|+..|||+|.++|+.++.|+++++++|||||||++|++|+++.+.......+.++|||+||++|+.|+++.+..+...
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 46899999999999999999999999999999999999999999988754334778999999999999999999999887
Q ss_pred CCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCC-CCCceeeEEeCCccccccCChHHHH-HHHHhhc-
Q 003924 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQL-HKILGQL- 196 (786)
Q Consensus 120 ~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l-~l~~l~~vV~DEah~l~~~gf~~~l-~~Il~~l- 196 (786)
.++.+..++|+.....+...+..+++|+|+||++|.+++.. ..+ .+.++++|||||||++...+....+ ..++...
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED-GTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHS-SSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHh-ccccccccCCEEEEECccccCCCccHHHHHHHHHHHhh
Confidence 89999999999987776777777899999999999999876 345 7889999999999999876543332 2222221
Q ss_pred ---ccCCceEEEeccCcH-----------HHHHHHHh------------------cCCCCcceeeccccccCCC------
Q 003924 197 ---SENRQTLLFSATLPS-----------ALAEFAKA------------------GLRDPHLVRLDVDTKISPD------ 238 (786)
Q Consensus 197 ---~~~~q~ll~SATl~~-----------~l~~~~~~------------------~l~~p~~i~~~~~~~~~~~------ 238 (786)
.+..++|+||||++. .+..+... ++..|..............
T Consensus 402 ~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (797)
T 4a2q_A 402 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 481 (797)
T ss_dssp TTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHH
Confidence 446899999999952 22222211 1111211111000000000
Q ss_pred ---------------------ceee---------ee--------------------------------------------
Q 003924 239 ---------------------LKLA---------FF-------------------------------------------- 244 (786)
Q Consensus 239 ---------------------l~~~---------~~-------------------------------------------- 244 (786)
+... +.
T Consensus 482 ~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 561 (797)
T 4a2q_A 482 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 561 (797)
T ss_dssp HHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 0000 00
Q ss_pred ----------------------------------------------ecchHHHHHHHHHHHHHhc--cCCCcEEEEEcch
Q 003924 245 ----------------------------------------------TLRQEEKHAALLYMIREHI--SSDQQTLIFVSTK 276 (786)
Q Consensus 245 ----------------------------------------------~v~~~~k~~~Ll~lL~~~~--~~~~k~IVF~~t~ 276 (786)
......|...|..+|.+.+ ..+.++||||+++
T Consensus 562 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~ 641 (797)
T 4a2q_A 562 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 641 (797)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSH
T ss_pred ccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcH
Confidence 0001235566666776533 4578999999999
Q ss_pred hhHHHHHHHHHHc------------CCCceeecCCCCHHHHHHHHHHHhc-CCcEEEEEecccccccCCCCcceeEecCC
Q 003924 277 HHVEFLNVLFREE------------GLEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWDF 343 (786)
Q Consensus 277 ~~ae~l~~~L~~~------------g~~v~~lhg~l~q~~R~~~l~~F~~-g~~~ILVaTdv~arGlDIp~v~~VI~~d~ 343 (786)
.+++.++..|... |..+..+||+|++.+|..+++.|++ |.++|||||+++++|||+|.+++||+||+
T Consensus 642 ~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 642 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp HHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCSEEEEESC
T ss_pred HHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCC
Confidence 9999999999873 5566677899999999999999999 99999999999999999999999999999
Q ss_pred CCCHhHHHHHhhccccCCCccEEEEEEecccHHH
Q 003924 344 PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (786)
Q Consensus 344 P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~ 377 (786)
|+++..|+||+|| ||. +.|.++.|+++.+...
T Consensus 722 p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee 753 (797)
T 4a2q_A 722 SGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (797)
T ss_dssp CSCHHHHHTC---------CCCEEEEECCHHHHH
T ss_pred CCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHH
Confidence 9999999999999 998 8899999999876543
No 30
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=9.2e-44 Score=441.01 Aligned_cols=337 Identities=18% Similarity=0.226 Sum_probs=269.5
Q ss_pred CCccCCCCCHHHH-----HHHH-HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEE
Q 003924 23 GGFESLNLSPNVF-----RAIK-RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRA 96 (786)
Q Consensus 23 ~~f~~lgLs~~ll-----~~l~-~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~ 96 (786)
..|...++++.+. ..+. .+||. | |+|.++||.++.|+|++++||||||||+ |++|++..+.. .+.++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~----~~~~~ 102 (1054)
T 1gku_B 30 AAASLCLFPEDFLLKEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL----KGKRC 102 (1054)
T ss_dssp ECCCCSCCTTHHHHHHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT----TSCCE
T ss_pred ccccccccccccchHHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh----cCCeE
Confidence 3455666655433 3344 38999 9 9999999999999999999999999998 99999988765 36789
Q ss_pred EEEcCcHHHHHHHHHHHHHHccCCCC----eEEEEEcCCChhHH---HHHHcCCCCEEEECcHHHHHHHhhccCCCCCce
Q 003924 97 LILSPTRDLALQTLKFTKELGRYTDL----RISLLVGGDSMESQ---FEELAQNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (786)
Q Consensus 97 LIL~PtreLa~Q~~~~l~~l~~~~~l----~v~~l~gg~~~~~~---~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l 169 (786)
|||+||++||.|+++.+..++...++ .+..++||.+...+ ...+.. ++|+|+||++|++++.. +.++
T Consensus 103 lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~-----L~~l 176 (1054)
T 1gku_B 103 YVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE-----LGHF 176 (1054)
T ss_dssp EEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT-----SCCC
T ss_pred EEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH-----hccC
Confidence 99999999999999999999988888 89999999987763 444555 99999999999987764 5689
Q ss_pred eeEEeCCccccccCChHHHHHHHHhhc-----------ccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCC
Q 003924 170 EYVVFDEADCLFGMGFAEQLHKILGQL-----------SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPD 238 (786)
Q Consensus 170 ~~vV~DEah~l~~~gf~~~l~~Il~~l-----------~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~ 238 (786)
++|||||||++++ +...+..++..+ +..+|+++||||++.. ..++..++.++..+.+.........
T Consensus 177 ~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~~~~~~ 253 (1054)
T 1gku_B 177 DFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSRITVRN 253 (1054)
T ss_dssp SEEEESCHHHHHT--STHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCEECCCC
T ss_pred CEEEEeChhhhhh--ccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcccCcCC
Confidence 9999999999998 456777777665 4578999999999876 4333333333444444433333445
Q ss_pred ceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcE
Q 003924 239 LKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318 (786)
Q Consensus 239 l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ 318 (786)
+.+.+. ...+...|..++... +.++||||+|+.+|+.++..|... +.+..+||++. .+++.|++|+.+
T Consensus 254 i~~~~~---~~~k~~~L~~ll~~~---~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~ 321 (1054)
T 1gku_B 254 VEDVAV---NDESISTLSSILEKL---GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEID 321 (1054)
T ss_dssp EEEEEE---SCCCTTTTHHHHTTS---CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCS
T ss_pred ceEEEe---chhHHHHHHHHHhhc---CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCc
Confidence 555544 244555566666543 578999999999999999999988 99999999984 678999999999
Q ss_pred EEEE----ecccccccCCCCc-ceeEecCCC-------------------------------------------------
Q 003924 319 FLIV----TDVAARGIDIPLL-DNVINWDFP------------------------------------------------- 344 (786)
Q Consensus 319 ILVa----Tdv~arGlDIp~v-~~VI~~d~P------------------------------------------------- 344 (786)
|||| |+++++|||+|+| ++||+||+|
T Consensus 322 VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (1054)
T 1gku_B 322 HLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILK 401 (1054)
T ss_dssp EEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHH
T ss_pred EEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999995 999999999
Q ss_pred ----------------------CCHhHHHHHhhccccCCCcc--EEEEEEecccHHHHHHHHHHhcC
Q 003924 345 ----------------------PKPKIFVHRVGRAARAGRTG--TAFSFVTSEDMAYLLDLHLFLSK 387 (786)
Q Consensus 345 ----------------------~s~~~~vQRvGR~gR~G~~G--~ai~lv~~~e~~~l~~l~~~l~~ 387 (786)
.+...|+||+||+||.|..| .+++|+..+|...+..++..++.
T Consensus 402 ~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 402 KVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred HHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 78999999999999988776 48999999999888888887774
No 31
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.5e-43 Score=424.35 Aligned_cols=333 Identities=21% Similarity=0.253 Sum_probs=264.2
Q ss_pred CccCCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC
Q 003924 24 GFESLN--LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (786)
Q Consensus 24 ~f~~lg--Ls~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P 101 (786)
+|++|+ |++.+.+.+...||..|+|+|.++++.++.+++++++||||||||++|.+|+++.+.. +.++||++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~-----~~~~l~i~P 76 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK-----GGKSLYVVP 76 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT-----TCCEEEEES
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh-----CCcEEEEeC
Confidence 689999 9999999999999999999999999999999999999999999999999999988763 568999999
Q ss_pred cHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 102 treLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
+++|+.|+++.++.+. ..++++..++|+...... ...+++|+|+||+++..++.. ....+.++++|||||||.+.
T Consensus 77 ~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~-~~~~l~~~~~vIiDE~H~l~ 151 (702)
T 2p6r_A 77 LRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRN-RASWIKAVSCLVVDEIHLLD 151 (702)
T ss_dssp SHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHT-TCSGGGGCCEEEETTGGGGG
T ss_pred cHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHc-ChhHHhhcCEEEEeeeeecC
Confidence 9999999999886554 347899999997654432 234799999999999998876 33448899999999999999
Q ss_pred cCChHHHHHHHHhhc---ccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeee------eecchH---
Q 003924 182 GMGFAEQLHKILGQL---SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAF------FTLRQE--- 249 (786)
Q Consensus 182 ~~gf~~~l~~Il~~l---~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~------~~v~~~--- 249 (786)
+.++...+..++..+ .+..|+|++|||+++ ...++. ++..+. +..+.. ..+ +...+ ......
T Consensus 152 ~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~-~l~~~~-~~~~~r--~~~-l~~~~~~~~~~~~~~~~~~~ 225 (702)
T 2p6r_A 152 SEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAE-WLDADY-YVSDWR--PVP-LVEGVLCEGTLELFDGAFST 225 (702)
T ss_dssp CTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHH-HTTCEE-EECCCC--SSC-EEEEEECSSEEEEEETTEEE
T ss_pred CCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHH-HhCCCc-ccCCCC--Ccc-ceEEEeeCCeeeccCcchhh
Confidence 988888888777666 468999999999986 344444 343221 111111 101 11110 001100
Q ss_pred ----HHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc------------------------------CCCcee
Q 003924 250 ----EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE------------------------------GLEPSV 295 (786)
Q Consensus 250 ----~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~------------------------------g~~v~~ 295 (786)
.....+.. .+..++++||||+++.+++.++..|... +..+.+
T Consensus 226 ~~~~~~~~~~~~----~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~ 301 (702)
T 2p6r_A 226 SRRVKFEELVEE----CVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAF 301 (702)
T ss_dssp EEECCHHHHHHH----HHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCE
T ss_pred hhhhhHHHHHHH----HHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEE
Confidence 12333333 3346789999999999999999888753 235788
Q ss_pred ecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEe----cC---CCCCHhHHHHHhhccccCC--CccEE
Q 003924 296 CYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD---FPPKPKIFVHRVGRAARAG--RTGTA 366 (786)
Q Consensus 296 lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~----~d---~P~s~~~~vQRvGR~gR~G--~~G~a 366 (786)
+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+ || .|.+...|+||+||+||.| ..|.|
T Consensus 302 ~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~ 381 (702)
T 2p6r_A 302 HHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEA 381 (702)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEE
T ss_pred ecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceE
Confidence 999999999999999999999999999999999999999999998 66 7899999999999999998 47999
Q ss_pred EEEEecccHH
Q 003924 367 FSFVTSEDMA 376 (786)
Q Consensus 367 i~lv~~~e~~ 376 (786)
+.++++.+..
T Consensus 382 ~~l~~~~~~~ 391 (702)
T 2p6r_A 382 IIIVGKRDRE 391 (702)
T ss_dssp EEECCGGGHH
T ss_pred EEEecCccHH
Confidence 9999998744
No 32
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.1e-41 Score=385.84 Aligned_cols=324 Identities=21% Similarity=0.270 Sum_probs=255.5
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeE
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v 124 (786)
.|+|+|.++++.++.+ ++++.++||+|||++++++++..+.. .+.++|||+|+++|+.|+.+.+..+.......+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~----~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v 83 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK----YGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKI 83 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH----SCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGE
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc----CCCeEEEEECCHHHHHHHHHHHHHHhCcchhhe
Confidence 7999999999999999 99999999999999999999988762 366899999999999999999999875556688
Q ss_pred EEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEE
Q 003924 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (786)
Q Consensus 125 ~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll 204 (786)
..++|+........ +..+++|+|+||+.|...+.. ..+.+.++++|||||||++.+......+...+.......++++
T Consensus 84 ~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~ 161 (494)
T 1wp9_A 84 VALTGEKSPEERSK-AWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIG 161 (494)
T ss_dssp EEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEE
T ss_pred EEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEE
Confidence 99999887665433 334689999999999988876 4577889999999999999876656666666666677899999
Q ss_pred EeccCcH---HHHHHHHhcCCCCcceeecccccc-----CCCcee-----------------------------------
Q 003924 205 FSATLPS---ALAEFAKAGLRDPHLVRLDVDTKI-----SPDLKL----------------------------------- 241 (786)
Q Consensus 205 ~SATl~~---~l~~~~~~~l~~p~~i~~~~~~~~-----~~~l~~----------------------------------- 241 (786)
+||||+. .+..+.......+..+........ ......
T Consensus 162 lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (494)
T 1wp9_A 162 LTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLES 241 (494)
T ss_dssp EESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSC
T ss_pred EecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999973 333333322111100000000000 000000
Q ss_pred ---------------------------------------------------------eee--------------------
Q 003924 242 ---------------------------------------------------------AFF-------------------- 244 (786)
Q Consensus 242 ---------------------------------------------------------~~~-------------------- 244 (786)
.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (494)
T 1wp9_A 242 SSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFS 321 (494)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhh
Confidence 000
Q ss_pred ----------------ecchHHHHHHHHHHHHHhc--cCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecC--------
Q 003924 245 ----------------TLRQEEKHAALLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYG-------- 298 (786)
Q Consensus 245 ----------------~v~~~~k~~~Ll~lL~~~~--~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg-------- 298 (786)
......|...|..+|.... ..+.++||||+++..++.++..|...++.+..+||
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~ 401 (494)
T 1wp9_A 322 DKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDR 401 (494)
T ss_dssp SHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC----
T ss_pred hHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccc
Confidence 0022346667777777654 46889999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHH
Q 003924 299 DMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (786)
Q Consensus 299 ~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~ 376 (786)
++++.+|..+++.|++|.++|||||+++++|||+|.+++||+||+|+++..|+||+||+||.|+ |.++.|+++.+..
T Consensus 402 ~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~e 478 (494)
T 1wp9_A 402 GLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRD 478 (494)
T ss_dssp ---CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHH
T ss_pred cCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998 9999999997654
No 33
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=8.4e-42 Score=419.81 Aligned_cols=335 Identities=19% Similarity=0.235 Sum_probs=214.6
Q ss_pred HHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHcc
Q 003924 39 KRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (786)
Q Consensus 39 ~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~ 118 (786)
.-.|+..|+|+|.++|+.++.|+++++.++||||||++|++|+++.+.......+.++|||+||++|+.|+++.+..+..
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 34578899999999999999999999999999999999999999887765333367899999999999999999999988
Q ss_pred CCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCC-CCCceeeEEeCCccccccCChHHH-HHHHHhhc
Q 003924 119 YTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAEQ-LHKILGQL 196 (786)
Q Consensus 119 ~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l-~l~~l~~vV~DEah~l~~~gf~~~-l~~Il~~l 196 (786)
..++.+..++|+.....+...+..+++|+|+||++|.+++... .+ .+.++++|||||||++...+.... +..++...
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~-~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG-TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp TTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS-SCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred ccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC-ccccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8899999999998766655566667999999999999998863 44 688999999999999987653322 22332221
Q ss_pred ----ccCCceEEEeccCcH-----------HHHHHHHh------------------cCCCCcceeeccccccCCC-----
Q 003924 197 ----SENRQTLLFSATLPS-----------ALAEFAKA------------------GLRDPHLVRLDVDTKISPD----- 238 (786)
Q Consensus 197 ----~~~~q~ll~SATl~~-----------~l~~~~~~------------------~l~~p~~i~~~~~~~~~~~----- 238 (786)
.+..++++||||++. .+..+... ++..|..............
T Consensus 401 ~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l 480 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (936)
T ss_dssp HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHH
T ss_pred hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHH
Confidence 445899999999942 22222111 1112211111000000000
Q ss_pred ----------------------ceee---------ee-e-----------------------------------------
Q 003924 239 ----------------------LKLA---------FF-T----------------------------------------- 245 (786)
Q Consensus 239 ----------------------l~~~---------~~-~----------------------------------------- 245 (786)
+... +. .
T Consensus 481 ~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~ 560 (936)
T 4a2w_A 481 SNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (936)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0000 00 0
Q ss_pred ------------------------------------------------cchHHHHHHHHHHHHHhc--cCCCcEEEEEcc
Q 003924 246 ------------------------------------------------LRQEEKHAALLYMIREHI--SSDQQTLIFVST 275 (786)
Q Consensus 246 ------------------------------------------------v~~~~k~~~Ll~lL~~~~--~~~~k~IVF~~t 275 (786)
.....|...|..+|.+.+ ..+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t 640 (936)
T 4a2w_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (936)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESS
T ss_pred chhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence 001235555666776643 456899999999
Q ss_pred hhhHHHHHHHHHHc------------CCCceeecCCCCHHHHHHHHHHHhc-CCcEEEEEecccccccCCCCcceeEecC
Q 003924 276 KHHVEFLNVLFREE------------GLEPSVCYGDMDQDARKIHVSRFRA-RKTMFLIVTDVAARGIDIPLLDNVINWD 342 (786)
Q Consensus 276 ~~~ae~l~~~L~~~------------g~~v~~lhg~l~q~~R~~~l~~F~~-g~~~ILVaTdv~arGlDIp~v~~VI~~d 342 (786)
+..++.++..|... |.....+||+|++.+|..+++.|++ |.++|||||+++++|||+|.+++||+||
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD 720 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYE 720 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCSEEEEES
T ss_pred HHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeC
Confidence 99999999999986 5556667889999999999999999 9999999999999999999999999999
Q ss_pred CCCCHhHHHHHhhccccCCCccEEEEEEecccHH
Q 003924 343 FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (786)
Q Consensus 343 ~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~ 376 (786)
+|+++..|+||+|| ||. +.|.++.|++..+..
T Consensus 721 ~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 721 YSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVV 752 (936)
T ss_dssp CCSCSHHHHCC---------CCCEEEEESCHHHH
T ss_pred CCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHH
Confidence 99999999999999 998 789999999887654
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-40 Score=409.56 Aligned_cols=322 Identities=18% Similarity=0.241 Sum_probs=256.0
Q ss_pred HHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 38 IKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 38 l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
....+| .|+|+|.++|+.++.|++++++||||||||++|++|++..+.. +.++||++||++|+.|+++.+..+.
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~-----g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN-----KQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT-----TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc-----CCeEEEECChHHHHHHHHHHHHHHh
Confidence 345678 4999999999999999999999999999999999999987743 6789999999999999999998865
Q ss_pred cCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcc
Q 003924 118 RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLS 197 (786)
Q Consensus 118 ~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~ 197 (786)
. .+.+++|+.... .+++|+|+||++|.+++.. ....+.++++|||||||++.++++...+..++..++
T Consensus 154 ~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~-~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~ 221 (1010)
T 2xgj_A 154 G----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYR-GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP 221 (1010)
T ss_dssp S----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHH-TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSC
T ss_pred C----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHc-CcchhhcCCEEEEechhhhcccchhHHHHHHHHhcC
Confidence 3 677788876533 3689999999999988876 356789999999999999999999999999999999
Q ss_pred cCCceEEEeccCcHHH--HHHHHhcCCCCcceeeccccccCCCceeeeee---------cch------------------
Q 003924 198 ENRQTLLFSATLPSAL--AEFAKAGLRDPHLVRLDVDTKISPDLKLAFFT---------LRQ------------------ 248 (786)
Q Consensus 198 ~~~q~ll~SATl~~~l--~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~---------v~~------------------ 248 (786)
...|+|++|||+|+.. ..++......+..+...... . ..+...++. +..
T Consensus 222 ~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~r-p-~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 222 DKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFR-P-TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp TTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCC-S-SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCC-c-ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 9999999999998753 24444333444333222111 1 112221111 000
Q ss_pred ----------------------------HHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCC--------
Q 003924 249 ----------------------------EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE-------- 292 (786)
Q Consensus 249 ----------------------------~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~-------- 292 (786)
......++..+... ...++||||+++..|+.++..|...++.
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~--~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 377 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKK--KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEAL 377 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHH--TCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHH
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 11122233333332 3458999999999999999988765443
Q ss_pred -------------------------------ceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEe-
Q 003924 293 -------------------------------PSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN- 340 (786)
Q Consensus 293 -------------------------------v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~- 340 (786)
+.++||+|++..|..++..|++|.++|||||+++++|||+|.+++||+
T Consensus 378 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~ 457 (1010)
T 2xgj_A 378 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS 457 (1010)
T ss_dssp HHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC
T ss_pred HHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC
Confidence 678999999999999999999999999999999999999999999999
Q ss_pred ---cCC----CCCHhHHHHHhhccccCCC--ccEEEEEEecc-cHHHHHHH
Q 003924 341 ---WDF----PPKPKIFVHRVGRAARAGR--TGTAFSFVTSE-DMAYLLDL 381 (786)
Q Consensus 341 ---~d~----P~s~~~~vQRvGR~gR~G~--~G~ai~lv~~~-e~~~l~~l 381 (786)
||. |.++..|+||+||+||.|. .|.|++++++. +...+..+
T Consensus 458 ~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l 508 (1010)
T 2xgj_A 458 VRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGM 508 (1010)
T ss_dssp SEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHH
T ss_pred CcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHH
Confidence 999 8999999999999999997 59999999876 55555554
No 35
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.8e-41 Score=402.86 Aligned_cols=323 Identities=18% Similarity=0.218 Sum_probs=250.2
Q ss_pred HHHHHHHHHCCCCCChHHHHHHHHHHHcC------CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHH
Q 003924 32 PNVFRAIKRKGYKVPTPIQRKTMPLILSG------ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (786)
Q Consensus 32 ~~ll~~l~~~g~~~ptpiQ~~aip~il~g------~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreL 105 (786)
..+-..+..+|| .|||+|.++|+.++.+ .+++++|+||||||++|++|+++.+.. +.+++|++||++|
T Consensus 356 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~-----g~qvlvlaPtr~L 429 (780)
T 1gm5_A 356 KLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA-----GFQTAFMVPTSIL 429 (780)
T ss_dssp HHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH-----TSCEEEECSCHHH
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCcHHH
Confidence 445555678999 9999999999999876 589999999999999999999988764 5689999999999
Q ss_pred HHHHHHHHHHHccCCCCeEEEEEcCCChhHHH---HHHc-CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 106 ALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 106 a~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~---~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
|.|+++.+..+....++++..++|+.+..... ..+. +.++|+|+||+.|.+ .+.+.++++|||||+|++.
T Consensus 430 a~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~------~~~~~~l~lVVIDEaHr~g 503 (780)
T 1gm5_A 430 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE------DVHFKNLGLVIIDEQHRFG 503 (780)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH------CCCCSCCCEEEEESCCCC-
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh------hhhccCCceEEecccchhh
Confidence 99999999999888899999999998876543 3333 469999999997743 4668899999999999953
Q ss_pred cCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHH
Q 003924 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIRE 261 (786)
Q Consensus 182 ~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~ 261 (786)
+.. ...+......+++++||||+++....+.. +.+.....++........+...+ + .......++..+.+
T Consensus 504 ---~~q--r~~l~~~~~~~~vL~mSATp~p~tl~~~~--~g~~~~s~i~~~p~~r~~i~~~~--~-~~~~~~~l~~~i~~ 573 (780)
T 1gm5_A 504 ---VKQ--REALMNKGKMVDTLVMSATPIPRSMALAF--YGDLDVTVIDEMPPGRKEVQTML--V-PMDRVNEVYEFVRQ 573 (780)
T ss_dssp ---------CCCCSSSSCCCEEEEESSCCCHHHHHHH--TCCSSCEEECCCCSSCCCCEECC--C-CSSTHHHHHHHHHH
T ss_pred ---HHH--HHHHHHhCCCCCEEEEeCCCCHHHHHHHH--hCCcceeeeeccCCCCcceEEEE--e-ccchHHHHHHHHHH
Confidence 221 12233334578999999998665443332 33332222222111111222222 2 22334556777777
Q ss_pred hccCCCcEEEEEcchh--------hHHHHHHHHHH---cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeccccccc
Q 003924 262 HISSDQQTLIFVSTKH--------HVEFLNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (786)
Q Consensus 262 ~~~~~~k~IVF~~t~~--------~ae~l~~~L~~---~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGl 330 (786)
.+..+.+++|||+++. .++.++..|.. .++.+..+||+|++.+|..+++.|++|+++|||||+++++||
T Consensus 574 ~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GI 653 (780)
T 1gm5_A 574 EVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGI 653 (780)
T ss_dssp HTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCS
T ss_pred HHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccc
Confidence 7778899999999764 47788888877 478899999999999999999999999999999999999999
Q ss_pred CCCCcceeEecCCCC-CHhHHHHHhhccccCCCccEEEEEEecccHH
Q 003924 331 DIPLLDNVINWDFPP-KPKIFVHRVGRAARAGRTGTAFSFVTSEDMA 376 (786)
Q Consensus 331 DIp~v~~VI~~d~P~-s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~ 376 (786)
|+|++++||+++.|. +...|.||+||+||.|+.|.|++++++.+..
T Consensus 654 DiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~~~ 700 (780)
T 1gm5_A 654 DVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVGEE 700 (780)
T ss_dssp CCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCCHH
T ss_pred cCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCChH
Confidence 999999999999995 6888999999999999999999999864433
No 36
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.9e-41 Score=405.52 Aligned_cols=324 Identities=22% Similarity=0.259 Sum_probs=228.9
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC-CCCeEEEEEcCcHHHHHHH-HHHHHHHccCCCC
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVP-QGGVRALILSPTRDLALQT-LKFTKELGRYTDL 122 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~-~~g~r~LIL~PtreLa~Q~-~~~l~~l~~~~~l 122 (786)
.|+|+|.++++.++.|+++++.+|||||||++|++|+++.+..... ..+.++|||+|+++|+.|+ .+.+..++.. ++
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-~~ 85 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-WY 85 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT-TS
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc-Cc
Confidence 7999999999999999999999999999999999999988765311 2236799999999999999 9999988754 58
Q ss_pred eEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhh-----ccCCCCCceeeEEeCCccccccCCh-HHHHHHHHhh-
Q 003924 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE-----VEDMSLKSVEYVVFDEADCLFGMGF-AEQLHKILGQ- 195 (786)
Q Consensus 123 ~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~-----~~~l~l~~l~~vV~DEah~l~~~gf-~~~l~~Il~~- 195 (786)
.+..++|+......+..+...++|+|+||++|.+++.. ...+.+..+++|||||||++...++ ...+..++..
T Consensus 86 ~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~ 165 (699)
T 4gl2_A 86 RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQK 165 (699)
T ss_dssp CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHH
T ss_pred eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHHhh
Confidence 99999999887766666667899999999999988742 2356788999999999999865432 2222222222
Q ss_pred ---cc---------cCCceEEEeccCcHH-----------HHHHHHhcCCCCcceeeccc------cccCCCceeeeeec
Q 003924 196 ---LS---------ENRQTLLFSATLPSA-----------LAEFAKAGLRDPHLVRLDVD------TKISPDLKLAFFTL 246 (786)
Q Consensus 196 ---l~---------~~~q~ll~SATl~~~-----------l~~~~~~~l~~p~~i~~~~~------~~~~~~l~~~~~~v 246 (786)
.. +..++|++|||++.. +..+... +....+...... ....+.....+...
T Consensus 166 ~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~-l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~ 244 (699)
T 4gl2_A 166 LKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCAN-LDAFTIKTVKENLDQLKNQIQEPCKKFAIADA 244 (699)
T ss_dssp HHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHH-HTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-
T ss_pred hcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhh-cCCCEEEeecCchHHHhhhcCCCceEEEEccc
Confidence 11 567999999999851 2222221 111000000000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 003924 247 -------------------------------------------------------------------------------- 246 (786)
Q Consensus 247 -------------------------------------------------------------------------------- 246 (786)
T Consensus 245 ~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (699)
T 4gl2_A 245 TREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYT 324 (699)
T ss_dssp ----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ---------------------------c--------------------------hHHHHHHHHHHHHHhcc--C-CCcEE
Q 003924 247 ---------------------------R--------------------------QEEKHAALLYMIREHIS--S-DQQTL 270 (786)
Q Consensus 247 ---------------------------~--------------------------~~~k~~~Ll~lL~~~~~--~-~~k~I 270 (786)
. ...|...|..+|.+.+. . +.++|
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~I 404 (699)
T 4gl2_A 325 HLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGI 404 (699)
T ss_dssp HHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEE
T ss_pred HHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 0 01112223334443222 2 68999
Q ss_pred EEEcchhhHHHHHHHHHHc------CCCceeecCC--------CCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcc
Q 003924 271 IFVSTKHHVEFLNVLFREE------GLEPSVCYGD--------MDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLD 336 (786)
Q Consensus 271 VF~~t~~~ae~l~~~L~~~------g~~v~~lhg~--------l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~ 336 (786)
|||+++..++.++..|... |+.+..+||+ |++.+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 405 VF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~ 484 (699)
T 4gl2_A 405 IFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECN 484 (699)
T ss_dssp EECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCC
T ss_pred EEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCC
Confidence 9999999999999999987 8999999999 9999999999999999999999999999999999999
Q ss_pred eeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecc
Q 003924 337 NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE 373 (786)
Q Consensus 337 ~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~ 373 (786)
+||+||+|+++..|+||+||+||. |.+++++.+.
T Consensus 485 ~VI~~d~p~s~~~~~Qr~GRArr~---g~~~~l~~~~ 518 (699)
T 4gl2_A 485 IVIRYGLVTNEIAMVQARGRARAD---ESTYVLVAHS 518 (699)
T ss_dssp CCEEESCCCCHHHHHHHHTTSCSS---SCEEEEEEES
T ss_pred EEEEeCCCCCHHHHHHHcCCCCCC---CceEEEEEeC
Confidence 999999999999999999996554 4566666554
No 37
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1e-38 Score=398.10 Aligned_cols=325 Identities=18% Similarity=0.194 Sum_probs=262.9
Q ss_pred CCCCCHHHHHHHH-HCCCCCChHHHHHHHHHHHc----CC--cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEE
Q 003924 27 SLNLSPNVFRAIK-RKGYKVPTPIQRKTMPLILS----GA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (786)
Q Consensus 27 ~lgLs~~ll~~l~-~~g~~~ptpiQ~~aip~il~----g~--dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL 99 (786)
.++++..+...+. ..|| .|||+|.++|+.++. ++ +++++++||||||++|+++++..+. .+.++|||
T Consensus 585 ~~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~-----~g~~vlvl 658 (1151)
T 2eyq_A 585 AFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD-----NHKQVAVL 658 (1151)
T ss_dssp CCCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT-----TTCEEEEE
T ss_pred CCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH-----hCCeEEEE
Confidence 4578888887775 4788 579999999999987 66 8999999999999999999887654 36689999
Q ss_pred cCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHH---HHHc-CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeC
Q 003924 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF---EELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (786)
Q Consensus 100 ~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~---~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~D 175 (786)
+||++||.|+++.+..+....++.+..+.|..+..+.. ..+. +.++|+|+||+.+. ..+.+.++++||||
T Consensus 659 vPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~------~~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 659 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ------SDVKFKDLGLLIVD 732 (1151)
T ss_dssp CSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH------SCCCCSSEEEEEEE
T ss_pred echHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh------CCccccccceEEEe
Confidence 99999999999999988777788999998876655443 3343 46999999998663 35778999999999
Q ss_pred CccccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHH
Q 003924 176 EADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAAL 255 (786)
Q Consensus 176 Eah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~L 255 (786)
|||++ ......++..++...++++||||+++....++..++.++..+...... ...+...+...... .+
T Consensus 733 EaH~~-----g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~--r~~i~~~~~~~~~~----~i 801 (1151)
T 2eyq_A 733 EEHRF-----GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR--RLAVKTFVREYDSM----VV 801 (1151)
T ss_dssp SGGGS-----CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCB--CBCEEEEEEECCHH----HH
T ss_pred chHhc-----ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCC--ccccEEEEecCCHH----HH
Confidence 99993 345567777788889999999999877777777777666544332211 11223323332222 22
Q ss_pred HHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCC
Q 003924 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIP 333 (786)
Q Consensus 256 l~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~--g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp 333 (786)
...+...+..+++++|||+++.+++.++..|... ++.+..+||+|++.+|..++..|++|+++|||||+++++|||+|
T Consensus 802 ~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip 881 (1151)
T 2eyq_A 802 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 881 (1151)
T ss_dssp HHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCT
T ss_pred HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeeccc
Confidence 2333333446889999999999999999999987 78899999999999999999999999999999999999999999
Q ss_pred CcceeEecCC-CCCHhHHHHHhhccccCCCccEEEEEEeccc
Q 003924 334 LLDNVINWDF-PPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (786)
Q Consensus 334 ~v~~VI~~d~-P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e 374 (786)
++++||+++. +.+...|+||+||+||.|+.|.||+++.+.+
T Consensus 882 ~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 882 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCGG
T ss_pred CCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCcc
Confidence 9999999988 5789999999999999999999999998754
No 38
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=7.1e-42 Score=401.68 Aligned_cols=317 Identities=15% Similarity=0.174 Sum_probs=242.5
Q ss_pred ccC-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcH
Q 003924 25 FES-LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (786)
Q Consensus 25 f~~-lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptr 103 (786)
|.. +++++.++++|... +..|+|+|+.++|.++.|+++++.|+||||||++|++|+++.+.. .+.++|||+|||
T Consensus 151 ~~~~l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~----~~~~vLvl~Ptr 225 (618)
T 2whx_A 151 GNGVVTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK----RRLRTLILAPTR 225 (618)
T ss_dssp CC---------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH----TTCCEEEEESSH
T ss_pred ccccccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh----CCCeEEEEcChH
Confidence 444 77888888777654 588999999999999999999999999999999999999998875 367899999999
Q ss_pred HHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccC
Q 003924 104 DLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGM 183 (786)
Q Consensus 104 eLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~ 183 (786)
+||.|+++.+.. +.+. +.+.. .. ..-..+..+.++|.+.+.+.+.. ...+.++++|||||||++ ++
T Consensus 226 eLa~Qi~~~l~~------~~v~-~~~~~-l~---~~~tp~~~i~~~t~~~l~~~l~~--~~~l~~~~~iViDEah~~-~~ 291 (618)
T 2whx_A 226 VVAAEMEEALRG------LPIR-YQTPA-VK---SDHTGREIVDLMCHATFTTRLLS--STRVPNYNLIVMDEAHFT-DP 291 (618)
T ss_dssp HHHHHHHHHTTT------SCEE-ECCTT-SS---CCCCSSSCEEEEEHHHHHHHHHH--CSSCCCCSEEEEESTTCC-SH
T ss_pred HHHHHHHHHhcC------Ccee-Eeccc-ce---eccCCCceEEEEChHHHHHHHhc--cccccCCeEEEEECCCCC-Cc
Confidence 999999987752 3333 22211 00 01123455778898988877765 456899999999999998 77
Q ss_pred ChHHHHHHHHhhcc-cCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHh
Q 003924 184 GFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262 (786)
Q Consensus 184 gf~~~l~~Il~~l~-~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~ 262 (786)
+|...+..|+..++ ..+|+++||||+|..+..++. .++..+.+.... +. .....++..+.+
T Consensus 292 ~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~--~~------------~~~~~ll~~l~~- 353 (618)
T 2whx_A 292 CSVAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI--PE------------RSWNTGFDWITD- 353 (618)
T ss_dssp HHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC--CS------------SCCSSSCHHHHH-
T ss_pred cHHHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC--CH------------HHHHHHHHHHHh-
Confidence 88888888888876 689999999999876443322 234444333221 00 000122333433
Q ss_pred ccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCccee----
Q 003924 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNV---- 338 (786)
Q Consensus 263 ~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~V---- 338 (786)
..+++||||+|+.+++.++..|...++.+..+||. +|..+++.|++|+.+||||||++++||||| +++|
T Consensus 354 --~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 354 --YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp --CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred --CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECc
Confidence 36799999999999999999999999999999985 677899999999999999999999999998 8888
Q ss_pred ----------------EecCCCCCHhHHHHHhhccccCCC-ccEEEEEEe---cccHHHHHHHHHHh
Q 003924 339 ----------------INWDFPPKPKIFVHRVGRAARAGR-TGTAFSFVT---SEDMAYLLDLHLFL 385 (786)
Q Consensus 339 ----------------I~~d~P~s~~~~vQRvGR~gR~G~-~G~ai~lv~---~~e~~~l~~l~~~l 385 (786)
|+|++|.+...|+||+||+||+|. .|.|++|++ +.|...+..++..+
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i 493 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKM 493 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHHH
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhHh
Confidence 788889999999999999999965 899999998 77777666666544
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.6e-39 Score=398.08 Aligned_cols=321 Identities=20% Similarity=0.246 Sum_probs=246.8
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccC
Q 003924 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY 119 (786)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~ 119 (786)
..+| .|+|+|.++|+.++.|+++++.||||||||++|++|+...+. .+.++||++|+++|+.|+++.+..+.
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~-----~g~~vlvl~PtraLa~Q~~~~l~~~~-- 106 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR-----NMTKTIYTSPIKALSNQKFRDFKETF-- 106 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH-----TTCEEEEEESCGGGHHHHHHHHHTTC--
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh-----cCCeEEEEeCCHHHHHHHHHHHHHHc--
Confidence 3567 699999999999999999999999999999999999887654 36789999999999999999888754
Q ss_pred CCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccC
Q 003924 120 TDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSEN 199 (786)
Q Consensus 120 ~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~ 199 (786)
.++.+..++|+.... ..++|+|+||++|.+++.. ....+.++++|||||||++.+++|...+..++..++..
T Consensus 107 ~~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~-~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~ 178 (997)
T 4a4z_A 107 DDVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYR-GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH 178 (997)
T ss_dssp --CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHH-TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTT
T ss_pred CCCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHh-CchhhcCCCEEEEECcccccccchHHHHHHHHHhcccC
Confidence 267889999987533 4589999999999998876 35568899999999999999999999999999999999
Q ss_pred CceEEEeccCcHHH--HHHHHhcCCCCcceeeccccccCCCceeee----------------------------------
Q 003924 200 RQTLLFSATLPSAL--AEFAKAGLRDPHLVRLDVDTKISPDLKLAF---------------------------------- 243 (786)
Q Consensus 200 ~q~ll~SATl~~~l--~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~---------------------------------- 243 (786)
.++|++|||+|+.. ..++......+..+.. .... +..+.+.+
T Consensus 179 v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~-~~~r-~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (997)
T 4a4z_A 179 VKFILLSATVPNTYEFANWIGRTKQKNIYVIS-TPKR-PVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAK 256 (997)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTCCEEEEE-CSSC-SSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----
T ss_pred CCEEEEcCCCCChHHHHHHHhcccCCceEEEe-cCCC-CccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccc
Confidence 99999999998653 2222211111111110 0000 00011000
Q ss_pred -----------------------------------------------------------eecchHHHHHHHHHHHHHhcc
Q 003924 244 -----------------------------------------------------------FTLRQEEKHAALLYMIREHIS 264 (786)
Q Consensus 244 -----------------------------------------------------------~~v~~~~k~~~Ll~lL~~~~~ 264 (786)
...........++..+...
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~-- 334 (997)
T 4a4z_A 257 GAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR-- 334 (997)
T ss_dssp ------------------------------------------------------------CCCCTTHHHHHHHHHHHT--
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC--
Confidence 0011223345566666554
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHcCC---------------------------------------CceeecCCCCHHHH
Q 003924 265 SDQQTLIFVSTKHHVEFLNVLFREEGL---------------------------------------EPSVCYGDMDQDAR 305 (786)
Q Consensus 265 ~~~k~IVF~~t~~~ae~l~~~L~~~g~---------------------------------------~v~~lhg~l~q~~R 305 (786)
...++||||+++..|+.++..|...++ .+.++||+|++..|
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R 414 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVK 414 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHH
Confidence 457999999999999999999977655 46899999999999
Q ss_pred HHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCC---------CHhHHHHHhhccccCC--CccEEEEEEe--c
Q 003924 306 KIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPP---------KPKIFVHRVGRAARAG--RTGTAFSFVT--S 372 (786)
Q Consensus 306 ~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~---------s~~~~vQRvGR~gR~G--~~G~ai~lv~--~ 372 (786)
..++..|..|.++|||||+++++|||+|.+. ||++++|. ++..|+||+||+||.| ..|.|++++. +
T Consensus 415 ~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~-VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~ 493 (997)
T 4a4z_A 415 ELIEILFSKGFIKVLFATETFAMGLNLPTRT-VIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSP 493 (997)
T ss_dssp HHHHHHHHTTCCSEEEECTHHHHSCCCCCSE-EEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSC
T ss_pred HHHHHHHHCCCCcEEEEchHhhCCCCCCCce-EEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCc
Confidence 9999999999999999999999999999954 45444444 9999999999999998 4677877773 2
Q ss_pred ccHHHHHHH
Q 003924 373 EDMAYLLDL 381 (786)
Q Consensus 373 ~e~~~l~~l 381 (786)
.+...+..+
T Consensus 494 ~~~~~~~~~ 502 (997)
T 4a4z_A 494 LSIATFKEV 502 (997)
T ss_dssp CCHHHHHHH
T ss_pred chHHHHHHH
Confidence 344555444
No 40
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=4.9e-40 Score=379.18 Aligned_cols=313 Identities=15% Similarity=0.169 Sum_probs=244.0
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCe
Q 003924 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123 (786)
Q Consensus 44 ~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~ 123 (786)
..|||+|.++++.++.+++++++++||||||++|+.|+...+... ..++|||+||++|+.|+++.+..++...++.
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~----~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~ 187 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY----EGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC----SSEEEEEESSHHHHHHHHHHHHHTTSSCGGG
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC----CCeEEEEECcHHHHHHHHHHHHHhhcCCccc
Confidence 389999999999999999999999999999999999998877642 3489999999999999999999998777788
Q ss_pred EEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceE
Q 003924 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (786)
Q Consensus 124 v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~l 203 (786)
+..++|+.+...+ +...++|+|+||+.|... ....+.++++|||||||++.. ..+..++..++...+++
T Consensus 188 v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 188 IKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKF 256 (510)
T ss_dssp EEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCEEE
T ss_pred eEEEecCCccccc---cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcEEE
Confidence 9999998776654 456899999999987532 234577899999999999765 56778888888889999
Q ss_pred EEeccCcHHHHHHH-HhcCCCCcceeecccccc-----CC-Cceeee---------------------eecchHHHHHHH
Q 003924 204 LFSATLPSALAEFA-KAGLRDPHLVRLDVDTKI-----SP-DLKLAF---------------------FTLRQEEKHAAL 255 (786)
Q Consensus 204 l~SATl~~~l~~~~-~~~l~~p~~i~~~~~~~~-----~~-~l~~~~---------------------~~v~~~~k~~~L 255 (786)
+|||||+.....+. ...+.++..+.+...... .+ .+.... ..+....+...+
T Consensus 257 ~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (510)
T 2oca_A 257 GLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWI 336 (510)
T ss_dssp EEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHH
T ss_pred EEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHH
Confidence 99999976532211 111223333332221110 00 000000 111122344556
Q ss_pred HHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEe-cccccccCCCC
Q 003924 256 LYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-DVAARGIDIPL 334 (786)
Q Consensus 256 l~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaT-dv~arGlDIp~ 334 (786)
..++......+++.+|+|.+..+++.++..|...+..+..+||++++.+|..+++.|++|+.+||||| +++++|||+|+
T Consensus 337 ~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~ 416 (510)
T 2oca_A 337 AKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKN 416 (510)
T ss_dssp HHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCS
T ss_pred HHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhccccccc
Confidence 66666655555555555555889999999999988899999999999999999999999999999999 99999999999
Q ss_pred cceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEe
Q 003924 335 LDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVT 371 (786)
Q Consensus 335 v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~ 371 (786)
+++||++++|.++..|+||+||+||.|+.|.++.+++
T Consensus 417 v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 417 LHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp EEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred CcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999998775655655
No 41
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.1e-40 Score=376.84 Aligned_cols=287 Identities=17% Similarity=0.203 Sum_probs=221.0
Q ss_pred CCCCChHHHHHHHHHHHcCCcE-EEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 42 GYKVPTPIQRKTMPLILSGADV-VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 42 g~~~ptpiQ~~aip~il~g~dv-vl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
|+.+|+|+|+ +||.++.++++ +++||||||||++|++|++..+.. .+.++||++||++||.|+++.+.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~----~~~~~lvl~Ptr~La~Q~~~~l~------ 69 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL----RRLRTLILAPTRVVAAEMEEALR------ 69 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTT------
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh----cCCcEEEECCCHHHHHHHHHHhc------
Confidence 7899999986 79999999887 899999999999999999987765 36789999999999999998774
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhh-cccC
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ-LSEN 199 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~-l~~~ 199 (786)
++.+....+.... ....+..|.++|++.+.+.+.. ...+.++++|||||||++ +.++...+..+... .++.
T Consensus 70 g~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~--~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~ 141 (451)
T 2jlq_A 70 GLPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLS--STRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGE 141 (451)
T ss_dssp TSCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHH--CSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTS
T ss_pred Cceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhC--cccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCC
Confidence 3333322222111 1234567999999999988876 466889999999999987 44444433333322 3458
Q ss_pred CceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhH
Q 003924 200 RQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHV 279 (786)
Q Consensus 200 ~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~a 279 (786)
+|+++||||+|..+..+ ...++.++..... . + ...|. .+...+.+ ..+++||||+|+.++
T Consensus 142 ~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~--~-p--~~~~~---------~~~~~l~~---~~~~~lVF~~s~~~a 201 (451)
T 2jlq_A 142 AAAIFMTATPPGSTDPF---PQSNSPIEDIERE--I-P--ERSWN---------TGFDWITD---YQGKTVWFVPSIKAG 201 (451)
T ss_dssp CEEEEECSSCTTCCCSS---CCCSSCEEEEECC--C-C--SSCCS---------SSCHHHHH---CCSCEEEECSSHHHH
T ss_pred ceEEEEccCCCccchhh---hcCCCceEecCcc--C-C--chhhH---------HHHHHHHh---CCCCEEEEcCCHHHH
Confidence 99999999998754322 3334444433211 1 1 11111 11233333 356999999999999
Q ss_pred HHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecC-----------------
Q 003924 280 EFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWD----------------- 342 (786)
Q Consensus 280 e~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d----------------- 342 (786)
+.++..|...++.+..+||.+. ..+++.|++|+.+|||||+++++|||+|+ ++||+||
T Consensus 202 ~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~ 276 (451)
T 2jlq_A 202 NDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVIL 276 (451)
T ss_dssp HHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEE
T ss_pred HHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeee
Confidence 9999999999999999999764 46889999999999999999999999999 9999999
Q ss_pred ---CCCCHhHHHHHhhccccCCC-ccEEEEEEec
Q 003924 343 ---FPPKPKIFVHRVGRAARAGR-TGTAFSFVTS 372 (786)
Q Consensus 343 ---~P~s~~~~vQRvGR~gR~G~-~G~ai~lv~~ 372 (786)
+|.+...|+||+||+||.|. .|.|++|+..
T Consensus 277 ~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 277 AGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred cccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8999888754
No 42
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=6.9e-39 Score=385.21 Aligned_cols=336 Identities=18% Similarity=0.246 Sum_probs=252.5
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEE
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g-~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL 99 (786)
...+|++++|++.+.+.+...| ..|+++|+.+|+.++.+ ++++++||||||||+ ++|++-.........+.+++|+
T Consensus 70 ~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 70 KINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp SBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEE
T ss_pred CCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEec
Confidence 3568999999999999999988 78999999999988754 679999999999999 5666522211111126679999
Q ss_pred cCcHHHHHHHHHHHHH-HccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcc
Q 003924 100 SPTRDLALQTLKFTKE-LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (786)
Q Consensus 100 ~PtreLa~Q~~~~l~~-l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah 178 (786)
+|+++|+.|+++.+.. ++...+..+...+.... ....+++|+|+|||+++.++.. ...+.++++|||||+|
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~--~~~l~~~~~lIlDEah 218 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAME--DHDLSRYSCIILDEAH 218 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHH--STTCTTEEEEEECSGG
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhh--CccccCCCEEEecCcc
Confidence 9999999999876544 33223333332222111 1134689999999999988876 4568999999999999
Q ss_pred c-cccCChH-HHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHH
Q 003924 179 C-LFGMGFA-EQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALL 256 (786)
Q Consensus 179 ~-l~~~gf~-~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll 256 (786)
. .++..+. ..+..++.. .+..++|+||||++.. .+. .++.++.++.+.... ..+.+.|...........++
T Consensus 219 ~R~ld~d~~~~~l~~l~~~-~~~~~iIl~SAT~~~~--~l~-~~~~~~~vi~v~gr~---~pv~~~~~~~~~~~~~~~~l 291 (773)
T 2xau_A 219 ERTLATDILMGLLKQVVKR-RPDLKIIIMSATLDAE--KFQ-RYFNDAPLLAVPGRT---YPVELYYTPEFQRDYLDSAI 291 (773)
T ss_dssp GCCHHHHHHHHHHHHHHHH-CTTCEEEEEESCSCCH--HHH-HHTTSCCEEECCCCC---CCEEEECCSSCCSCHHHHHH
T ss_pred ccccchHHHHHHHHHHHHh-CCCceEEEEeccccHH--HHH-HHhcCCCcccccCcc---cceEEEEecCCchhHHHHHH
Confidence 5 5553322 233334333 3578999999999643 333 345555555444322 23555555555444444444
Q ss_pred HHHHHhc--cCCCcEEEEEcchhhHHHHHHHHHH-----------cCCCceeecCCCCHHHHHHHHHHHh-----cCCcE
Q 003924 257 YMIREHI--SSDQQTLIFVSTKHHVEFLNVLFRE-----------EGLEPSVCYGDMDQDARKIHVSRFR-----ARKTM 318 (786)
Q Consensus 257 ~lL~~~~--~~~~k~IVF~~t~~~ae~l~~~L~~-----------~g~~v~~lhg~l~q~~R~~~l~~F~-----~g~~~ 318 (786)
..+.... ..++++||||+++..++.++..|.. .++.+..+||+|++.+|..+++.|. .|..+
T Consensus 292 ~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k 371 (773)
T 2xau_A 292 RTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK 371 (773)
T ss_dssp HHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE
T ss_pred HHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE
Confidence 4333321 2478999999999999999999975 5778999999999999999999999 99999
Q ss_pred EEEEecccccccCCCCcceeEecCC------------------CCCHhHHHHHhhccccCCCccEEEEEEecccH
Q 003924 319 FLIVTDVAARGIDIPLLDNVINWDF------------------PPKPKIFVHRVGRAARAGRTGTAFSFVTSEDM 375 (786)
Q Consensus 319 ILVaTdv~arGlDIp~v~~VI~~d~------------------P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~ 375 (786)
|||||+++++|||||++++||++++ |.+...|+||+||+||. .+|.||.|+++.+.
T Consensus 372 VlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 372 VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred EEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 9999999999999999999999888 89999999999999999 78999999987755
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=8.1e-38 Score=400.65 Aligned_cols=347 Identities=18% Similarity=0.237 Sum_probs=260.6
Q ss_pred CCHHHHHHHHHCCCCCChHHHHHHHHHHHcC-CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHH
Q 003924 30 LSPNVFRAIKRKGYKVPTPIQRKTMPLILSG-ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQ 108 (786)
Q Consensus 30 Ls~~ll~~l~~~g~~~ptpiQ~~aip~il~g-~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q 108 (786)
|..+.+++|...+|..++|+|.++++.++.+ .+++++||||||||++|.+|++..+... .+.++||++|+++||.|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~---~~~kavyi~P~raLa~q 987 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS---SEGRCVYITPMEALAEQ 987 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC---TTCCEEEECSCHHHHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC---CCCEEEEEcChHHHHHH
Confidence 5567889999999999999999999999865 6799999999999999999999998764 46689999999999999
Q ss_pred HHHHHH-HHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccC-CCCCceeeEEeCCccccccCChH
Q 003924 109 TLKFTK-ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-MSLKSVEYVVFDEADCLFGMGFA 186 (786)
Q Consensus 109 ~~~~l~-~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~-l~l~~l~~vV~DEah~l~~~gf~ 186 (786)
+++.+. .|+...++++..++|+...+.. ...+++|+|||||++..++..... ..+.++++|||||+|.+.+. ..
T Consensus 988 ~~~~~~~~f~~~~g~~V~~ltGd~~~~~~---~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg 1063 (1724)
T 4f92_B 988 VYMDWYEKFQDRLNKKVVLLTGETSTDLK---LLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NG 1063 (1724)
T ss_dssp HHHHHHHHHTTTSCCCEEECCSCHHHHHH---HHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-TH
T ss_pred HHHHHHHHhchhcCCEEEEEECCCCcchh---hcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CC
Confidence 998776 5777789999999887654332 224689999999999777765322 23788999999999998874 44
Q ss_pred HHHHHHHh-------hcccCCceEEEeccCcHHHHHHHHh-cCCCCcceeeccccccCCCceeeeeecc---hHHHH---
Q 003924 187 EQLHKILG-------QLSENRQTLLFSATLPSALAEFAKA-GLRDPHLVRLDVDTKISPDLKLAFFTLR---QEEKH--- 252 (786)
Q Consensus 187 ~~l~~Il~-------~l~~~~q~ll~SATl~~~l~~~~~~-~l~~p~~i~~~~~~~~~~~l~~~~~~v~---~~~k~--- 252 (786)
..+..++. .++...|+|++|||+++. .+++.. +......+.+.......+ +...+.... ...+.
T Consensus 1064 ~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~~~~~~RPvp-L~~~i~~~~~~~~~~~~~~~ 1141 (1724)
T 4f92_B 1064 PVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFNFHPNVRPVP-LELHIQGFNISHTQTRLLSM 1141 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEECCGGGCSSC-EEEEEEEECCCSHHHHHHTT
T ss_pred ccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEEeCCCCCCCC-eEEEEEeccCCCchhhhhhh
Confidence 44444433 456789999999999864 334432 222223333333322222 332222222 11111
Q ss_pred -HHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc----------------------------------CCCceeec
Q 003924 253 -AALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----------------------------------GLEPSVCY 297 (786)
Q Consensus 253 -~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~----------------------------------g~~v~~lh 297 (786)
..+...+.. ...+.++||||+|+..|+.++..|... ...+.++|
T Consensus 1142 ~~~~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hH 1220 (1724)
T 4f92_B 1142 AKPVYHAITK-HSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLH 1220 (1724)
T ss_dssp HHHHHHHHHH-HCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEEC
T ss_pred cchHHHHHHH-hcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEEC
Confidence 122233333 246789999999999999887665321 23478899
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEe----------cCCCCCHhHHHHHhhccccCCC--ccE
Q 003924 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----------WDFPPKPKIFVHRVGRAARAGR--TGT 365 (786)
Q Consensus 298 g~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~----------~d~P~s~~~~vQRvGR~gR~G~--~G~ 365 (786)
|+|++.+|..+++.|++|.++|||||+++++|||+|...+||. ...|.++.+|+|++||+||+|. .|.
T Consensus 1221 agL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~ 1300 (1724)
T 4f92_B 1221 EGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGR 1300 (1724)
T ss_dssp TTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEE
T ss_pred CCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceE
Confidence 9999999999999999999999999999999999999999883 2346789999999999999997 699
Q ss_pred EEEEEecccHHHHHHHHHHhcCCC
Q 003924 366 AFSFVTSEDMAYLLDLHLFLSKPI 389 (786)
Q Consensus 366 ai~lv~~~e~~~l~~l~~~l~~~~ 389 (786)
|++++.+.+..++.. ++..+.
T Consensus 1301 avll~~~~~~~~~~~---ll~~~~ 1321 (1724)
T 4f92_B 1301 CVIMCQGSKKDFFKK---FLYEPL 1321 (1724)
T ss_dssp EEEEEEGGGHHHHHH---HTTSCB
T ss_pred EEEEecchHHHHHHH---HhCCCC
Confidence 999999988877655 454443
No 44
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=3.1e-38 Score=360.65 Aligned_cols=292 Identities=17% Similarity=0.199 Sum_probs=226.8
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCe-
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR- 123 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~- 123 (786)
.|+|+|.++++.++.+.+++++++||||||++|+.++... +.++|||||+++|+.|+.+.+..| ++.
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~--------~~~~Lvl~P~~~L~~Q~~~~~~~~----~~~~ 160 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH--------CSCEEEEESSHHHHHHHHHHGGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEECCHHHHHHHHHHHHhC----CCcc
Confidence 7999999999999999999999999999999999988764 457999999999999999888775 577
Q ss_pred EEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceE
Q 003924 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (786)
Q Consensus 124 v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~l 203 (786)
+..++|+.. ..++|+|+||+.+...+... ...+++|||||||++...+|.. ++..++ ..++|
T Consensus 161 v~~~~g~~~---------~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~~~~~~~~~----~~~~~~-~~~~l 222 (472)
T 2fwr_A 161 VGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYVQ----IAQMSI-APFRL 222 (472)
T ss_dssp EEEBSSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGGTTSTTTHH----HHHTCC-CSEEE
T ss_pred eEEECCCcC---------CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcCCCChHHHH----HHHhcC-CCeEE
Confidence 777777654 35899999999998766531 2458999999999999887754 444443 67899
Q ss_pred EEeccCcH-------------------HHHHHHHhcCCCCcceeeccccc--------------------------cCCC
Q 003924 204 LFSATLPS-------------------ALAEFAKAGLRDPHLVRLDVDTK--------------------------ISPD 238 (786)
Q Consensus 204 l~SATl~~-------------------~l~~~~~~~l~~p~~i~~~~~~~--------------------------~~~~ 238 (786)
++||||+. .+.++...++..+..+.+..+.. ....
T Consensus 223 ~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (472)
T 2fwr_A 223 GLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAED 302 (472)
T ss_dssp EEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSS
T ss_pred EEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhh
Confidence 99999962 23333333333332222211100 0000
Q ss_pred ceeee---------------------eecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeec
Q 003924 239 LKLAF---------------------FTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCY 297 (786)
Q Consensus 239 l~~~~---------------------~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lh 297 (786)
+...+ +.+....+...|..++... .+.++||||++..+++.++..|. +..+|
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~ 375 (472)
T 2fwr_A 303 FNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFL-----IPAIT 375 (472)
T ss_dssp STTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHTT-----CCBCC
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHhC-----cceee
Confidence 00000 1123345677788888773 57899999999999999998873 66899
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCc---cEEEEEEecc
Q 003924 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT---GTAFSFVTSE 373 (786)
Q Consensus 298 g~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~---G~ai~lv~~~ 373 (786)
|+++..+|..+++.|++|+++|||||+++++|+|+|.+++||++++|+++..|+||+||+||.|+. ..+|.|++.+
T Consensus 376 g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 376 HRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp SSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred CCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999999999853 3456667654
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=6.7e-37 Score=392.21 Aligned_cols=334 Identities=19% Similarity=0.284 Sum_probs=250.2
Q ss_pred CCCCChHHHHHHHHHHHc-CCcEEEEcCCCChHHHHHHHHHHHHHhhcCC------CCCeEEEEEcCcHHHHHHHHHHHH
Q 003924 42 GYKVPTPIQRKTMPLILS-GADVVAMARTGSGKTAAFLVPMLQRLNQHVP------QGGVRALILSPTRDLALQTLKFTK 114 (786)
Q Consensus 42 g~~~ptpiQ~~aip~il~-g~dvvl~a~TGSGKT~afllpile~L~~~~~------~~g~r~LIL~PtreLa~Q~~~~l~ 114 (786)
||..++|+|.+++|.++. ++++|++||||||||++|.+|++..|..+.. ..+.++|||+|+++||.|+++.+.
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 899999999999999885 6899999999999999999999999976432 246799999999999999999998
Q ss_pred HHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccC-CCCCceeeEEeCCccccccCChHHHHHHHH
Q 003924 115 ELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-MSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (786)
Q Consensus 115 ~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~-l~l~~l~~vV~DEah~l~~~gf~~~l~~Il 193 (786)
......+++|..++|+...... ...+++|+||||+++..++..... ..++.+++|||||+|.+.+ .....+..++
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d-~RG~~lE~~l 231 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD-DRGPVLEALV 231 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-TTHHHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-ccHHHHHHHH
Confidence 8777889999999998765432 124699999999998655543211 1378899999999998766 4555555444
Q ss_pred h-------hcccCCceEEEeccCcHHHHHHHHhcCCCCc--ceeeccccccCCCceeeeeecch---HHHHHHHHHHHHH
Q 003924 194 G-------QLSENRQTLLFSATLPSALAEFAKAGLRDPH--LVRLDVDTKISPDLKLAFFTLRQ---EEKHAALLYMIRE 261 (786)
Q Consensus 194 ~-------~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~--~i~~~~~~~~~~~l~~~~~~v~~---~~k~~~Ll~lL~~ 261 (786)
. .++...|+|++|||+|+. .+++...-.++. ...++..... -.+...++.+.. ......+...+..
T Consensus 232 ~rl~~~~~~~~~~~riI~LSATl~N~-~dvA~wL~~~~~~~~~~~~~~~RP-vpL~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (1724)
T 4f92_B 232 ARAIRNIEMTQEDVRLIGLSATLPNY-EDVATFLRVDPAKGLFYFDNSFRP-VPLEQTYVGITEKKAIKRFQIMNEIVYE 309 (1724)
T ss_dssp HHHHHHHHHHTCCCEEEEEECSCTTH-HHHHHHTTCCHHHHEEECCGGGCS-SCEEEECCEECCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCcEEEEecccCCH-HHHHHHhCCCCCCCeEEECCCCcc-CccEEEEeccCCcchhhhhHHHHHHHHH
Confidence 3 356788999999999863 445443222221 1122222222 223444433322 1222222222222
Q ss_pred h---ccCCCcEEEEEcchhhHHHHHHHHHHc-------------------------------------CCCceeecCCCC
Q 003924 262 H---ISSDQQTLIFVSTKHHVEFLNVLFREE-------------------------------------GLEPSVCYGDMD 301 (786)
Q Consensus 262 ~---~~~~~k~IVF~~t~~~ae~l~~~L~~~-------------------------------------g~~v~~lhg~l~ 301 (786)
. ...++++||||+|+..|+.++..|.+. ...+.++||+|+
T Consensus 310 ~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~ 389 (1724)
T 4f92_B 310 KIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMT 389 (1724)
T ss_dssp HHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSC
T ss_pred HHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCC
Confidence 1 234679999999999999888777531 234778999999
Q ss_pred HHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEe----cC------CCCCHhHHHHHhhccccCCC--ccEEEEE
Q 003924 302 QDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN----WD------FPPKPKIFVHRVGRAARAGR--TGTAFSF 369 (786)
Q Consensus 302 q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~----~d------~P~s~~~~vQRvGR~gR~G~--~G~ai~l 369 (786)
+.+|..+.+.|++|.++|||||++++.|||+|..++||. |+ .|.++.+|.||+|||||+|. .|.++++
T Consensus 390 ~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 390 RVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp THHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEE
Confidence 999999999999999999999999999999999999984 44 35689999999999999875 6999999
Q ss_pred EecccHHHHHHH
Q 003924 370 VTSEDMAYLLDL 381 (786)
Q Consensus 370 v~~~e~~~l~~l 381 (786)
.++++..++..+
T Consensus 470 ~~~~~~~~~~~l 481 (1724)
T 4f92_B 470 TSHGELQYYLSL 481 (1724)
T ss_dssp EESTTCCHHHHH
T ss_pred ecchhHHHHHHH
Confidence 999887665554
No 46
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=1.8e-39 Score=367.89 Aligned_cols=280 Identities=18% Similarity=0.263 Sum_probs=197.3
Q ss_pred HHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhH
Q 003924 56 LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMES 135 (786)
Q Consensus 56 ~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~ 135 (786)
.++.|++++++||||||||++|++|+++.+... +.++|||+||++||.|+++.+..+ .+....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~----~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~--- 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR----RLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFS--- 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCC---
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc----CCeEEEEcchHHHHHHHHHHHhcC------CeEEecccce---
Confidence 356899999999999999999999999987653 678999999999999999887643 2322211110
Q ss_pred HHHHHcCCCCEEEECcHHHHHHHhh-------ccCCCCCceeeEEeCCccccccCChHHHHHHHHhhc-ccCCceEEEec
Q 003924 136 QFEELAQNPDIIIATPGRLMHHLSE-------VEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSA 207 (786)
Q Consensus 136 ~~~~l~~~~dIiV~Tpgrll~~l~~-------~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l-~~~~q~ll~SA 207 (786)
+|+||+++++++.. .....+.++++|||||||++ +.++...+..+...+ +..+|+++|||
T Consensus 71 -----------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SA 138 (440)
T 1yks_A 71 -----------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTA 138 (440)
T ss_dssp -----------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECS
T ss_pred -----------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeC
Confidence 36666554433221 01345889999999999998 444443333333333 35799999999
Q ss_pred cCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHH
Q 003924 208 TLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFR 287 (786)
Q Consensus 208 Tl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~ 287 (786)
|+++.+..++.. .+.+..+.. .+.... ...++..+.+ .++++||||+++..++.++..|.
T Consensus 139 T~~~~~~~~~~~---~~~~~~~~~-------------~~~~~~-~~~~~~~l~~---~~~~~lVF~~s~~~a~~l~~~L~ 198 (440)
T 1yks_A 139 TPPGTSDEFPHS---NGEIEDVQT-------------DIPSEP-WNTGHDWILA---DKRPTAWFLPSIRAANVMAASLR 198 (440)
T ss_dssp SCTTCCCSSCCC---SSCEEEEEC-------------CCCSSC-CSSSCHHHHH---CCSCEEEECSCHHHHHHHHHHHH
T ss_pred CCCchhhhhhhc---CCCeeEeee-------------ccChHH-HHHHHHHHHh---cCCCEEEEeCCHHHHHHHHHHHH
Confidence 998764322211 111111110 011110 0112233333 36799999999999999999999
Q ss_pred HcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEe-------------------cCCCCCHh
Q 003924 288 EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN-------------------WDFPPKPK 348 (786)
Q Consensus 288 ~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~-------------------~d~P~s~~ 348 (786)
..++.+..+|| .+|..+++.|++|+++|||||+++++|||+| +++||+ |+.|.+..
T Consensus 199 ~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~ 273 (440)
T 1yks_A 199 KAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISAS 273 (440)
T ss_dssp HTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHH
T ss_pred HcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHH
Confidence 99999999999 3578899999999999999999999999999 999986 89999999
Q ss_pred HHHHHhhccccC-CCccEEEEEE---ecccHHHHHHHHHHh
Q 003924 349 IFVHRVGRAARA-GRTGTAFSFV---TSEDMAYLLDLHLFL 385 (786)
Q Consensus 349 ~~vQRvGR~gR~-G~~G~ai~lv---~~~e~~~l~~l~~~l 385 (786)
.|+||+||+||. |+.|.|++|+ ++.+..++..++..+
T Consensus 274 ~~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~ 314 (440)
T 1yks_A 274 SAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASM 314 (440)
T ss_dssp HHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred HHHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhhHHh
Confidence 999999999998 6899999996 677777776666543
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=4.6e-39 Score=380.32 Aligned_cols=306 Identities=17% Similarity=0.209 Sum_probs=221.9
Q ss_pred HHHHCCCC-----CChHHHH-----HHHHHHH------cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc
Q 003924 37 AIKRKGYK-----VPTPIQR-----KTMPLIL------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (786)
Q Consensus 37 ~l~~~g~~-----~ptpiQ~-----~aip~il------~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~ 100 (786)
+|..+||. .|||+|+ .+||.++ .+++++++|+||||||++|++|+++.+.. .+.++|||+
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~----~~~~~lila 277 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ----KRLRTAVLA 277 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH----TTCCEEEEE
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh----CCCcEEEEc
Confidence 56667887 8999999 9999988 89999999999999999999999988765 367899999
Q ss_pred CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccc
Q 003924 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (786)
Q Consensus 101 PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l 180 (786)
||++||.|+++.+..+. +. ...+... . .-..+.-+-+.+.+.+.+.+.. ...+.++++|||||||++
T Consensus 278 PTr~La~Q~~~~l~~~~----i~--~~~~~l~--~---v~tp~~ll~~l~~~~l~~~l~~--~~~l~~l~lvViDEaH~~ 344 (673)
T 2wv9_A 278 PTRVVAAEMAEALRGLP----VR--YLTPAVQ--R---EHSGNEIVDVMCHATLTHRLMS--PLRVPNYNLFVMDEAHFT 344 (673)
T ss_dssp SSHHHHHHHHHHTTTSC----CE--ECCC-----C---CCCSCCCEEEEEHHHHHHHHHS--SSCCCCCSEEEEESTTCC
T ss_pred cHHHHHHHHHHHHhcCC----ee--eeccccc--c---cCCHHHHHHHHHhhhhHHHHhc--ccccccceEEEEeCCccc
Confidence 99999999998876542 21 1111000 0 0011223445555666555544 356899999999999997
Q ss_pred ccCChHHHHHHHHhhcc-cCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHH
Q 003924 181 FGMGFAEQLHKILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMI 259 (786)
Q Consensus 181 ~~~gf~~~l~~Il~~l~-~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL 259 (786)
+..+...+..+...++ ..+|+|+||||++..+..+... ++.+..+... +... ....++..+
T Consensus 345 -~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~---~~~i~~v~~~-------------~~~~-~~~~~l~~l 406 (673)
T 2wv9_A 345 -DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT---NSPVHDVSSE-------------IPDR-AWSSGFEWI 406 (673)
T ss_dssp -CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC---SSCEEEEECC-------------CCSS-CCSSCCHHH
T ss_pred -CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc---CCceEEEeee-------------cCHH-HHHHHHHHH
Confidence 3333344444444443 6799999999998654322211 1111111110 0000 001122233
Q ss_pred HHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeE
Q 003924 260 REHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI 339 (786)
Q Consensus 260 ~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI 339 (786)
. ..++++||||+++.+++.++..|...++.+..+||. +|..+++.|++|+.+|||||+++++|||+| +++||
T Consensus 407 ~---~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI 478 (673)
T 2wv9_A 407 T---DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVI 478 (673)
T ss_dssp H---SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEE
T ss_pred H---hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEE
Confidence 2 247899999999999999999999999999999994 788899999999999999999999999999 99999
Q ss_pred e--------------------cCCCCCHhHHHHHhhccccC-CCccEEEEEE---ecccHHHHHHHHHHh
Q 003924 340 N--------------------WDFPPKPKIFVHRVGRAARA-GRTGTAFSFV---TSEDMAYLLDLHLFL 385 (786)
Q Consensus 340 ~--------------------~d~P~s~~~~vQRvGR~gR~-G~~G~ai~lv---~~~e~~~l~~l~~~l 385 (786)
+ |++|.++..|+||+||+||. |+.|.||+|+ ++.|..++..++..+
T Consensus 479 ~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~ 548 (673)
T 2wv9_A 479 DCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKI 548 (673)
T ss_dssp ECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHHHHHH
T ss_pred ECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHHHHHH
Confidence 8 67999999999999999999 7899999996 567766666655433
No 48
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=1.7e-38 Score=370.76 Aligned_cols=279 Identities=18% Similarity=0.266 Sum_probs=215.4
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeE
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v 124 (786)
.++++|..+++.+..+++++++|+||||||++|++|+++. +.++||++|||+||.|+++.+.... +..+
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------g~~vLVl~PTReLA~Qia~~l~~~~---g~~v 285 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------GYKVLVLNPSVAATLGFGAYMSKAH---GIDP 285 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT--------TCCEEEEESCHHHHHHHHHHHHHHH---SCCC
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC--------CCeEEEEcchHHHHHHHHHHHHHHh---CCCe
Confidence 3445566666666678899999999999999999998862 5589999999999999998765432 3556
Q ss_pred EEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCc--e
Q 003924 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ--T 202 (786)
Q Consensus 125 ~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q--~ 202 (786)
...+|+.. +..+++|+|+|||+|+ .. ..+.+.++++||||||| +++++|...+..|+..++..++ +
T Consensus 286 g~~vG~~~-------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH-~l~~~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 286 NIRTGVRT-------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECH-STDSTTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp EEECSSCE-------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTT-CCSHHHHHHHHHHHHHTTTTTCSEE
T ss_pred eEEECcEe-------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccch-hcCccHHHHHHHHHHhhhhcCCceE
Confidence 67777754 3567999999999984 32 46778899999999996 4677888899999999987777 6
Q ss_pred EEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHH
Q 003924 203 LLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFL 282 (786)
Q Consensus 203 ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l 282 (786)
++||||+|..+. ...|....+... ....+...-.... +. ...++++||||+|+..++.+
T Consensus 354 il~SAT~~~~i~------~~~p~i~~v~~~--~~~~i~~~~~~~~-----------l~--~~~~~~vLVFv~Tr~~ae~l 412 (666)
T 3o8b_A 354 VLATATPPGSVT------VPHPNIEEVALS--NTGEIPFYGKAIP-----------IE--AIRGGRHLIFCHSKKKCDEL 412 (666)
T ss_dssp EEEESSCTTCCC------CCCTTEEEEECB--SCSSEEETTEEEC-----------GG--GSSSSEEEEECSCHHHHHHH
T ss_pred EEECCCCCcccc------cCCcceEEEeec--ccchhHHHHhhhh-----------hh--hccCCcEEEEeCCHHHHHHH
Confidence 778999987311 122222211111 1111110000000 00 12578999999999999999
Q ss_pred HHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeE----------ecC----------
Q 003924 283 NVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVI----------NWD---------- 342 (786)
Q Consensus 283 ~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI----------~~d---------- 342 (786)
++.|...++.+..+||+|++.+ |.++..+||||||++++|||+| +++|| |||
T Consensus 413 a~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~ 484 (666)
T 3o8b_A 413 AAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETT 484 (666)
T ss_dssp HHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEE
T ss_pred HHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccc
Confidence 9999999999999999999875 5567779999999999999998 99988 777
Q ss_pred -CCCCHhHHHHHhhccccCCCccEEEEEEecccHHH
Q 003924 343 -FPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAY 377 (786)
Q Consensus 343 -~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~ 377 (786)
+|.+...|+||+||+|| |+.|. |.|+++.|...
T Consensus 485 ~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 485 TVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp EEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBCS
T ss_pred cCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhhc
Confidence 89999999999999999 99999 99999877544
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.1e-37 Score=355.19 Aligned_cols=272 Identities=19% Similarity=0.225 Sum_probs=199.4
Q ss_pred HHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChh
Q 003924 55 PLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME 134 (786)
Q Consensus 55 p~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~ 134 (786)
..+..+++++++||||||||++|++|+++.+.. .+.++|||+||++||.|+++.+. ++.+....+.....
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~----~~~~~lvl~Ptr~La~Q~~~~l~------g~~v~~~~~~~~~~ 85 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ----QRLRTAVLAPTRVVAAEMAEALR------GLPVRYQTSAVQRE 85 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH----TTCCEEEEECSHHHHHHHHHHTT------TSCEEECC------
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh----CCCcEEEECchHHHHHHHHHHhc------CceEeEEecccccC
Confidence 345678899999999999999999999988765 36789999999999999998876 23333222211110
Q ss_pred HHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccc-----ccCChHHHHHHHHhhcccCCceEEEeccC
Q 003924 135 SQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL-----FGMGFAEQLHKILGQLSENRQTLLFSATL 209 (786)
Q Consensus 135 ~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l-----~~~gf~~~l~~Il~~l~~~~q~ll~SATl 209 (786)
-..+..+.++|.+.+.+.+.. ...+.++++|||||||++ +.++|...+. .+..+|+++||||+
T Consensus 86 -----~t~~~~i~~~~~~~l~~~l~~--~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~SAT~ 153 (459)
T 2z83_A 86 -----HQGNEIVDVMCHATLTHRLMS--PNRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMTATP 153 (459)
T ss_dssp -------CCCSEEEEEHHHHHHHHHS--CC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEECSSC
T ss_pred -----CCCCcEEEEEchHHHHHHhhc--cccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEEcCC
Confidence 123455788999988877765 466889999999999983 3444333221 23689999999999
Q ss_pred cHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc
Q 003924 210 PSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE 289 (786)
Q Consensus 210 ~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~ 289 (786)
|..+..+... ..|... +.. ..+. .....++.++.+ .++++||||+++.+++.++..|...
T Consensus 154 ~~~~~~~~~~--~~pi~~-~~~--~~~~------------~~~~~~~~~l~~---~~~~~LVF~~s~~~~~~l~~~L~~~ 213 (459)
T 2z83_A 154 PGTTDPFPDS--NAPIHD-LQD--EIPD------------RAWSSGYEWITE---YAGKTVWFVASVKMGNEIAMCLQRA 213 (459)
T ss_dssp TTCCCSSCCC--SSCEEE-EEC--CCCS------------SCCSSCCHHHHH---CCSCEEEECSCHHHHHHHHHHHHHT
T ss_pred CcchhhhccC--CCCeEE-ecc--cCCc------------chhHHHHHHHHh---cCCCEEEEeCChHHHHHHHHHHHhc
Confidence 8754322211 122211 110 0000 000111233333 2679999999999999999999999
Q ss_pred CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEe--------------------cCCCCCHhH
Q 003924 290 GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVIN--------------------WDFPPKPKI 349 (786)
Q Consensus 290 g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~--------------------~d~P~s~~~ 349 (786)
++.+..+||. +|..++..|++|+.+|||||+++++|||||+ ++||+ |++|.++..
T Consensus 214 g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~ 288 (459)
T 2z83_A 214 GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSAS 288 (459)
T ss_dssp TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHH
T ss_pred CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHH
Confidence 9999999995 5778899999999999999999999999999 99999 779999999
Q ss_pred HHHHhhccccCCC-ccEEEEEEecc
Q 003924 350 FVHRVGRAARAGR-TGTAFSFVTSE 373 (786)
Q Consensus 350 ~vQRvGR~gR~G~-~G~ai~lv~~~ 373 (786)
|+||+||+||.|. .|.|++|+++.
T Consensus 289 ~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 289 AAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred HHHhccccCCCCCCCCeEEEEEccc
Confidence 9999999999997 99999999885
No 50
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1e-35 Score=310.09 Aligned_cols=211 Identities=36% Similarity=0.575 Sum_probs=195.0
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcC---CCCCeEEE
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV---PQGGVRAL 97 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~---~~~g~r~L 97 (786)
...+|++++|++.++++|..+||..|||+|.++||.++.|+++++.||||||||++|++|++..+.... ...+.++|
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~l 106 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICL 106 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEE
T ss_pred ccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEE
Confidence 357899999999999999999999999999999999999999999999999999999999999887532 13467899
Q ss_pred EEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCc
Q 003924 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (786)
Q Consensus 98 IL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEa 177 (786)
||+||++|+.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|++++.. ..+.+.++++||||||
T Consensus 107 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViDEa 185 (242)
T 3fe2_A 107 VLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC-GKTNLRRTTYLVLDEA 185 (242)
T ss_dssp EECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH-TSCCCTTCCEEEETTH
T ss_pred EEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCCCcccccEEEEeCH
Confidence 999999999999999999998899999999999999988888888999999999999999876 4677899999999999
Q ss_pred cccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccc
Q 003924 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD 232 (786)
Q Consensus 178 h~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~ 232 (786)
|++++++|...+..++..+++.+|+++||||+|+.+..++..++.+|..|.+...
T Consensus 186 h~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 186 DRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC-
T ss_pred HHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999999999999999999999999999999999999999999999988877643
No 51
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=9.9e-35 Score=294.09 Aligned_cols=203 Identities=32% Similarity=0.615 Sum_probs=187.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P 101 (786)
+.+|++++|++.++++|..+||..|+|+|.++++.++.++++++.+|||||||++|++|+++.+... ..+.++||++|
T Consensus 2 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~--~~~~~~lil~P 79 (206)
T 1vec_A 2 GNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK--KDNIQAMVIVP 79 (206)
T ss_dssp CSSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT--SCSCCEEEECS
T ss_pred CCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc--CCCeeEEEEeC
Confidence 5689999999999999999999999999999999999999999999999999999999999887543 24678999999
Q ss_pred cHHHHHHHHHHHHHHccCC-CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccc
Q 003924 102 TRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (786)
Q Consensus 102 treLa~Q~~~~l~~l~~~~-~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l 180 (786)
|++|+.|+++.+..+.... ++.+..++|+.....+...+..+++|+|+||++|.+++.. ..+.+.++++|||||||++
T Consensus 80 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah~~ 158 (206)
T 1vec_A 80 TRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK-GVAKVDHVQMIVLDEADKL 158 (206)
T ss_dssp CHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT-TCSCCTTCCEEEEETHHHH
T ss_pred cHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHc-CCcCcccCCEEEEEChHHh
Confidence 9999999999999998776 7899999999998888888888999999999999998876 4567889999999999999
Q ss_pred ccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcce
Q 003924 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLV 227 (786)
Q Consensus 181 ~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i 227 (786)
.+.+|...+..++..++..+|+++||||+|..+..++..++.+|..|
T Consensus 159 ~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 159 LSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp TSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999999999999899999999999999999999999998655
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1e-35 Score=336.32 Aligned_cols=269 Identities=17% Similarity=0.224 Sum_probs=198.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~ 138 (786)
.|++++++||||||||++|++|+++.+.. .+.++|||+||++||.|+++.+. ++.+..+.|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~----~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~----- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK----KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS----- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH----TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-----------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh----CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc-----
Confidence 37899999999999999999999977654 36789999999999999887765 4556555554221
Q ss_pred HHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhc-ccCCceEEEeccCcHHHHHHH
Q 003924 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQTLLFSATLPSALAEFA 217 (786)
Q Consensus 139 ~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l-~~~~q~ll~SATl~~~l~~~~ 217 (786)
.-..+..+.++|.+.+.+.+.. ...+.++++|||||||++ +.++...+..+.... +..+++|+||||+++.+..+.
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~ 142 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFP 142 (431)
T ss_dssp ---CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSC
T ss_pred cCCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhc
Confidence 1123456788899999887765 566899999999999997 444444544444443 568999999999987432211
Q ss_pred HhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeec
Q 003924 218 KAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCY 297 (786)
Q Consensus 218 ~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lh 297 (786)
. .++.++.+... +. ......++..+.+ .++++||||+++.+++.++..|...++.+..+|
T Consensus 143 ~---~~~~i~~~~~~-------------~~-~~~~~~~~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lh 202 (431)
T 2v6i_A 143 P---SNSPIIDEETR-------------IP-DKAWNSGYEWITE---FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLN 202 (431)
T ss_dssp C---CSSCCEEEECC-------------CC-SSCCSSCCHHHHS---CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEES
T ss_pred C---CCCceeecccc-------------CC-HHHHHHHHHHHHc---CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeC
Confidence 1 11212211110 00 0111122334433 367899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcce-----------------eEecCCCCCHhHHHHHhhccccC
Q 003924 298 GDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDN-----------------VINWDFPPKPKIFVHRVGRAARA 360 (786)
Q Consensus 298 g~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~-----------------VI~~d~P~s~~~~vQRvGR~gR~ 360 (786)
|+ .|..+++.|++|+.+|||||+++++|||+| +++ ||+++.|.+...|+||+||+||.
T Consensus 203 g~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~ 277 (431)
T 2v6i_A 203 RK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRN 277 (431)
T ss_dssp TT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred Cc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCC
Confidence 97 477899999999999999999999999999 554 67889999999999999999999
Q ss_pred CC-ccEEEEEE
Q 003924 361 GR-TGTAFSFV 370 (786)
Q Consensus 361 G~-~G~ai~lv 370 (786)
|. .|.++++.
T Consensus 278 g~~~~~~~~~~ 288 (431)
T 2v6i_A 278 PEKLGDIYAYS 288 (431)
T ss_dssp TTCCCCEEEEC
T ss_pred CCCCCeEEEEc
Confidence 85 56666665
No 53
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=317.08 Aligned_cols=205 Identities=33% Similarity=0.573 Sum_probs=185.6
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEE
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALIL 99 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g--~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL 99 (786)
..+|++|+|++.++++|..+||..|||+|..+||.++.| ++++++||||||||++|++|+++.+... ..++++|||
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~--~~~~~~lil 168 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA--NKYPQCLCL 168 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc--CCCceEEEE
Confidence 468999999999999999999999999999999999998 9999999999999999999999988653 346689999
Q ss_pred cCcHHHHHHHHHHHHHHccCC-CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcc
Q 003924 100 SPTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (786)
Q Consensus 100 ~PtreLa~Q~~~~l~~l~~~~-~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah 178 (786)
+||++||.|+++.+..++... ++.+..++||....... ..+++|+||||++|++++.....+.+.++++|||||||
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad 245 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 245 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHH
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHH
Confidence 999999999999999998764 78899999987754432 45789999999999999976556789999999999999
Q ss_pred cccc-CChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeecc
Q 003924 179 CLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDV 231 (786)
Q Consensus 179 ~l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~ 231 (786)
++++ .+|...+..|+..++..+|+++||||+|..+..++..++.+|..|.+..
T Consensus 246 ~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~~ 299 (300)
T 3fmo_B 246 VMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 299 (300)
T ss_dssp HHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEECC
T ss_pred HHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEecC
Confidence 9998 7999999999999999999999999999999999999999999887753
No 54
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=304.22 Aligned_cols=207 Identities=37% Similarity=0.635 Sum_probs=191.7
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P 101 (786)
..+|++++|++.++++|..+||..|+|+|.++|+.++.|++++++||||||||++|++|+++.+... ..+.++|||+|
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~--~~~~~~lil~P 119 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLET--PQRLFALVLTP 119 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CCSSCEEEECS
T ss_pred cCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcC--CCCceEEEEeC
Confidence 3579999999999999999999999999999999999999999999999999999999999988764 23568999999
Q ss_pred cHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 102 TRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 102 treLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
|++|+.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|.+++.....+.+.++++|||||||++.
T Consensus 120 tr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~ 199 (249)
T 3ber_A 120 TRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRIL 199 (249)
T ss_dssp SHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhh
Confidence 99999999999999988889999999999998888888888999999999999999886556778999999999999999
Q ss_pred cCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeec
Q 003924 182 GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (786)
Q Consensus 182 ~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~ 230 (786)
+++|...+..++..++..+|+++||||+|..+..+++.++.+|..+.+.
T Consensus 200 ~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 200 NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp HTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999877653
No 55
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=4.6e-35 Score=306.87 Aligned_cols=219 Identities=37% Similarity=0.602 Sum_probs=190.0
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcC-------CCCCe
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-------PQGGV 94 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~-------~~~g~ 94 (786)
..+|++|+|++.++++|..+||..|||+|.++|+.++.|+++++++|||||||++|++|+++.+.... ...+.
T Consensus 22 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~ 101 (253)
T 1wrb_A 22 IENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP 101 (253)
T ss_dssp CCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred cCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCc
Confidence 45799999999999999999999999999999999999999999999999999999999999886532 12356
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEe
Q 003924 95 RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174 (786)
Q Consensus 95 r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~ 174 (786)
++|||+||++|+.|+++.+..++...++.+..++||.....+...+..+++|+|+||++|.+++.. ..+.+.++++|||
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~lVi 180 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK-NKISLEFCKYIVL 180 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT-TSBCCTTCCEEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHc-CCCChhhCCEEEE
Confidence 899999999999999999999998889999999999998888888888999999999999999876 4567899999999
Q ss_pred CCccccccCChHHHHHHHHhh--ccc--CCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCcee
Q 003924 175 DEADCLFGMGFAEQLHKILGQ--LSE--NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKL 241 (786)
Q Consensus 175 DEah~l~~~gf~~~l~~Il~~--l~~--~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~ 241 (786)
||||++++++|...+..++.. ++. .+|+++||||+|+.+..++..++.+|..+.+.......+++.+
T Consensus 181 DEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~q 251 (253)
T 1wrb_A 181 DEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVGSTSDSIKQ 251 (253)
T ss_dssp ETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC-----------
T ss_pred eCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCCCCcCCcee
Confidence 999999999999999999985 444 7899999999999999999999999988887766544444443
No 56
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=5.5e-35 Score=343.28 Aligned_cols=301 Identities=16% Similarity=0.176 Sum_probs=190.6
Q ss_pred CChHHHHHHHHHHHc----C-CcEEEEcCCCChHHHHHHHHHHHHHhhcC-----CCCCeEEEEEcCcHHHHHHHH-HHH
Q 003924 45 VPTPIQRKTMPLILS----G-ADVVAMARTGSGKTAAFLVPMLQRLNQHV-----PQGGVRALILSPTRDLALQTL-KFT 113 (786)
Q Consensus 45 ~ptpiQ~~aip~il~----g-~dvvl~a~TGSGKT~afllpile~L~~~~-----~~~g~r~LIL~PtreLa~Q~~-~~l 113 (786)
.|+|+|.++|+.++. + ++++++++||||||++++..+. .+.... ...+.++|||+||++|+.|+. +.+
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~-~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISW-KLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHH-HHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHH-HHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 799999999999886 4 5699999999999999665444 443321 114678999999999999998 766
Q ss_pred HHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhh---ccCCCCCceeeEEeCCccccccCChHHHHH
Q 003924 114 KELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSE---VEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190 (786)
Q Consensus 114 ~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~---~~~l~l~~l~~vV~DEah~l~~~gf~~~l~ 190 (786)
..|+ ..+..+.++. ...+++|+|+||++|..++.. ...+....+++|||||||++...+ ...+.
T Consensus 257 ~~~~----~~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~ 323 (590)
T 3h1t_A 257 TPFG----DARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWR 323 (590)
T ss_dssp TTTC----SSEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CH
T ss_pred Hhcc----hhhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHH
Confidence 6654 3344443322 245789999999999876532 124566789999999999987642 35667
Q ss_pred HHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCc------------------ceeeccccccC-------------CCc
Q 003924 191 KILGQLSENRQTLLFSATLPSALAEFAKAGLRDPH------------------LVRLDVDTKIS-------------PDL 239 (786)
Q Consensus 191 ~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~------------------~i~~~~~~~~~-------------~~l 239 (786)
.++..++ ..++|+|||||......-....+..+. ++.+....... ..+
T Consensus 324 ~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (590)
T 3h1t_A 324 EILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREI 402 (590)
T ss_dssp HHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------
T ss_pred HHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccc
Confidence 7777776 578999999987432222222233221 11111110000 000
Q ss_pred eeeeeecc-------hHHHHHH----HHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCC--------CceeecCCC
Q 003924 240 KLAFFTLR-------QEEKHAA----LLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGL--------EPSVCYGDM 300 (786)
Q Consensus 240 ~~~~~~v~-------~~~k~~~----Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~--------~v~~lhg~l 300 (786)
....+... ...+... +..++... ...+++||||+++.+|+.++..|...+. .+..+||++
T Consensus 403 ~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~-~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~ 481 (590)
T 3h1t_A 403 PDGEYQTKDFERVIALKARTDAFAKHLTDFMKRT-DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEE 481 (590)
T ss_dssp ------CCSHHHHHHHHHTHHHHHHHHHHHHHHH-CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTT
T ss_pred ccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhc-CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCC
Confidence 00000000 0112222 22333332 4568999999999999999999987643 267889987
Q ss_pred CHHHHHHHHHHHhcCCcE---EEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCC
Q 003924 301 DQDARKIHVSRFRARKTM---FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGR 362 (786)
Q Consensus 301 ~q~~R~~~l~~F~~g~~~---ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~ 362 (786)
++ +|..+++.|++++.+ |||||+++++|||+|.+++||++++|.++..|+||+||++|.+.
T Consensus 482 ~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 482 GK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred hH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 64 799999999998766 88899999999999999999999999999999999999999875
No 57
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=298.38 Aligned_cols=206 Identities=36% Similarity=0.621 Sum_probs=181.5
Q ss_pred CCCCccC-CCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcC----CCCCeE
Q 003924 21 KSGGFES-LNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV----PQGGVR 95 (786)
Q Consensus 21 ~~~~f~~-lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~----~~~g~r 95 (786)
...+|++ +++++.++++|..+||..|||+|.++||.++.|+++++.||||||||++|++|++..+.... ...+.+
T Consensus 17 p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~ 96 (228)
T 3iuy_A 17 PTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPG 96 (228)
T ss_dssp CCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCS
T ss_pred ChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCc
Confidence 4567888 79999999999999999999999999999999999999999999999999999998875421 125778
Q ss_pred EEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeC
Q 003924 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (786)
Q Consensus 96 ~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~D 175 (786)
+|||+||++|+.|+++.+..+. ..++.+..++||.....+...+..+++|+|+||++|.+++.. ..+.+.++++||||
T Consensus 97 ~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lViD 174 (228)
T 3iuy_A 97 MLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN-NSVNLRSITYLVID 174 (228)
T ss_dssp EEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT-TCCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-CCcCcccceEEEEE
Confidence 9999999999999999999986 568899999999988888888888999999999999998876 46778999999999
Q ss_pred CccccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCccee
Q 003924 176 EADCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVR 228 (786)
Q Consensus 176 Eah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~ 228 (786)
|||++++++|...+..++..++..+|+++||||+|+.+..++..++.+|.++.
T Consensus 175 Eah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 175 EADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp CHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred CHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 99999999999999999999999999999999999999999999999998764
No 58
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4e-34 Score=296.41 Aligned_cols=208 Identities=37% Similarity=0.676 Sum_probs=187.5
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcC--CCCCeEEEEE
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV--PQGGVRALIL 99 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~--~~~g~r~LIL 99 (786)
..+|++++|++.++++|..+||..|+|+|.++++.++.|+++++.+|||||||++|++|+++.+.... ...+.++|||
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 45799999999999999999999999999999999999999999999999999999999999886421 1246789999
Q ss_pred cCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccc
Q 003924 100 SPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (786)
Q Consensus 100 ~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~ 179 (786)
+||++|+.|+++.+..++...++.+..++||.....+...+ .+++|+|+||++|++++.....+.+.++++|||||||+
T Consensus 104 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 182 (236)
T 2pl3_A 104 SPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADR 182 (236)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHH
T ss_pred eCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHH
Confidence 99999999999999999988899999999998877766655 57999999999999988774457788999999999999
Q ss_pred cccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeec
Q 003924 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (786)
Q Consensus 180 l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~ 230 (786)
+.+++|...+..++..++..+|+++||||+|+.+..+++.++.+|..+.++
T Consensus 183 ~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 183 ILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999888664
No 59
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=1.3e-34 Score=296.82 Aligned_cols=205 Identities=32% Similarity=0.590 Sum_probs=186.6
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 23 ~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
.+|++|+|++.++++|..+||..|+|+|.++++.++.|+++++.+|||||||++|++|+++.+... ..+.++|||+||
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~--~~~~~~lil~Pt 81 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE--RAEVQAVITAPT 81 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEECSS
T ss_pred CCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC--cCCceEEEEcCc
Confidence 579999999999999999999999999999999999999999999999999999999999987643 246789999999
Q ss_pred HHHHHHHHHHHHHHccCC----CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcc
Q 003924 103 RDLALQTLKFTKELGRYT----DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (786)
Q Consensus 103 reLa~Q~~~~l~~l~~~~----~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah 178 (786)
++|+.|+++.+..+.... ++.+..++||.....+...+..+++|+|+||++|.+++.. ..+.+.++++|||||||
T Consensus 82 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah 160 (219)
T 1q0u_A 82 RELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE-QALDVHTAHILVVDEAD 160 (219)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT-TCCCGGGCCEEEECSHH
T ss_pred HHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc-CCCCcCcceEEEEcCch
Confidence 999999999999988766 7889999999877666655667899999999999998876 46778999999999999
Q ss_pred ccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeec
Q 003924 179 CLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (786)
Q Consensus 179 ~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~ 230 (786)
++.+++|...+..++..++..+|+++||||+|..+.++++.++.+|..+.+.
T Consensus 161 ~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~ 212 (219)
T 1q0u_A 161 LMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVL 212 (219)
T ss_dssp HHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC
T ss_pred HHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEee
Confidence 9999999999999999999999999999999999999999999999877554
No 60
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=1.8e-34 Score=299.84 Aligned_cols=207 Identities=33% Similarity=0.580 Sum_probs=178.4
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~ 100 (786)
...+|++|+|++.++++|..+||..|+|+|.++|+.++.++++++.+|||||||++|++|+++.+... ..+.++|||+
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~--~~~~~~lil~ 105 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE--FKETQALVLA 105 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT--SCSCCEEEEC
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCceEEEEE
Confidence 35689999999999999999999999999999999999999999999999999999999999987643 2466899999
Q ss_pred CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCC-CCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccc
Q 003924 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQN-PDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (786)
Q Consensus 101 PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~-~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~ 179 (786)
||++|+.|+++.+..++...++.+..++||.....+...+..+ ++|+|+||++|.+++.. ..+.+..+++|||||||+
T Consensus 106 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~ 184 (237)
T 3bor_A 106 PTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR-RYLSPKWIKMFVLDEADE 184 (237)
T ss_dssp SSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHT-TSSCSTTCCEEEEESHHH
T ss_pred CcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh-CCcCcccCcEEEECCchH
Confidence 9999999999999999988899999999998877776666555 99999999999998876 457788999999999999
Q ss_pred cccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeec
Q 003924 180 LFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (786)
Q Consensus 180 l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~ 230 (786)
+.+++|...+..++..++..+|+++||||+|+.+..++..++.+|..|.++
T Consensus 185 ~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 185 MLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp HHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred hhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 999999999999999999999999999999999999999999999887664
No 61
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=4.8e-34 Score=295.13 Aligned_cols=206 Identities=33% Similarity=0.536 Sum_probs=185.2
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~ 100 (786)
...+|++|+|++.++++|..+||..|+|+|.++++.++.|+++++.+|||||||++|++|+++.+... ..+.++|||+
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~--~~~~~~lil~ 99 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE--NLSTQILILA 99 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--SCSCCEEEEC
T ss_pred CCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc--CCCceEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999987643 2467899999
Q ss_pred CcHHHHHHHHHHHHHHccCC-CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccc
Q 003924 101 PTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADC 179 (786)
Q Consensus 101 PtreLa~Q~~~~l~~l~~~~-~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~ 179 (786)
||++|+.|+++.+..++... ++++..++||.....+...+ .+++|+|+||++|.+++.. ..+.+.++++|||||||+
T Consensus 100 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~ 177 (230)
T 2oxc_A 100 PTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIEL-DYLNPGSIRLFILDEADK 177 (230)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHT-TSSCGGGCCEEEESSHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhc-CCcccccCCEEEeCCchH
Confidence 99999999999999998665 89999999998887776655 4799999999999998876 467788999999999999
Q ss_pred cccCC-hHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeec
Q 003924 180 LFGMG-FAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (786)
Q Consensus 180 l~~~g-f~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~ 230 (786)
++++| |...+..++..++..+|+++||||+|+.+..++..++.+|..+.++
T Consensus 178 ~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~~ 229 (230)
T 2oxc_A 178 LLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLN 229 (230)
T ss_dssp HHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC-
T ss_pred hhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEcC
Confidence 99998 9999999999999999999999999999999999999999877653
No 62
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=302.79 Aligned_cols=205 Identities=39% Similarity=0.623 Sum_probs=184.4
Q ss_pred CCCccCCC--CCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcC--CCCCeEEE
Q 003924 22 SGGFESLN--LSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV--PQGGVRAL 97 (786)
Q Consensus 22 ~~~f~~lg--Ls~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~--~~~g~r~L 97 (786)
..+|++++ |++.++++|..+||..|+|+|.++++.++.+++++++||||||||++|++|+++.+.... ...+.++|
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~l 130 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL 130 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEE
Confidence 45677777 999999999999999999999999999999999999999999999999999999887532 12467899
Q ss_pred EEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCc
Q 003924 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEA 177 (786)
Q Consensus 98 IL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEa 177 (786)
||+||++||.|+++.+..++...++.+..++||.....+...+..+++|+|+||+++++++.....+.+.++++||||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 99999999999999999999889999999999999888888887889999999999999988755577899999999999
Q ss_pred cccccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcc
Q 003924 178 DCLFGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHL 226 (786)
Q Consensus 178 h~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~ 226 (786)
|++++++|...+..|+..++..+|+++||||+|+.+..+++.++.++.+
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~~ 259 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEPL 259 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCCE
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCCe
Confidence 9999999999999999999999999999999999999999999886644
No 63
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=5.4e-34 Score=336.28 Aligned_cols=312 Identities=17% Similarity=0.211 Sum_probs=222.6
Q ss_pred CHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHH
Q 003924 31 SPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTL 110 (786)
Q Consensus 31 s~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~ 110 (786)
..+.+++|..+++ |. |.......+.+++++++||||||||+ +++..+... ..++|++|||+||.|++
T Consensus 130 ~~d~l~~i~dl~~--p~--~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~-----~~gl~l~PtR~LA~Qi~ 196 (677)
T 3rc3_A 130 CKDDLRKISDLRI--PP--NWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA-----KSGVYCGPLKLLAHEIF 196 (677)
T ss_dssp CHHHHHHHTBCCC--GG--GGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS-----SSEEEEESSHHHHHHHH
T ss_pred CHHHHHHHhhccC--hh--hhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc-----CCeEEEeCHHHHHHHHH
Confidence 4455566654444 33 22333455789999999999999998 334444432 23599999999999999
Q ss_pred HHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHH
Q 003924 111 KFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLH 190 (786)
Q Consensus 111 ~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~ 190 (786)
+.+..+ ++.+..++|+..... ..-....+++++|++.+ .....+++|||||||++++.+|...+.
T Consensus 197 ~~l~~~----g~~v~lltG~~~~iv--~TpGr~~~il~~T~e~~---------~l~~~v~lvVIDEaH~l~d~~~g~~~~ 261 (677)
T 3rc3_A 197 EKSNAA----GVPCDLVTGEERVTV--QPNGKQASHVSCTVEMC---------SVTTPYEVAVIDEIQMIRDPARGWAWT 261 (677)
T ss_dssp HHHHHT----TCCEEEECSSCEECC--STTCCCCSEEEEEGGGC---------CSSSCEEEEEECSGGGGGCTTTHHHHH
T ss_pred HHHHhc----CCcEEEEECCeeEEe--cCCCcccceeEecHhHh---------hhcccCCEEEEecceecCCccchHHHH
Confidence 998876 578889998765310 00001256777776432 124678999999999999999999999
Q ss_pred HHHhhcc-cCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcE
Q 003924 191 KILGQLS-ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQT 269 (786)
Q Consensus 191 ~Il~~l~-~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~ 269 (786)
.++..++ ...+++++|||.+. +..++... ..+..+.. .....+ +......+ ..+.. .....
T Consensus 262 ~~l~~l~~~~i~il~~SAT~~~-i~~l~~~~-~~~~~v~~--~~r~~~-l~~~~~~l----------~~l~~---~~~g~ 323 (677)
T 3rc3_A 262 RALLGLCAEEVHLCGEPAAIDL-VMELMYTT-GEEVEVRD--YKRLTP-ISVLDHAL----------ESLDN---LRPGD 323 (677)
T ss_dssp HHHHHCCEEEEEEEECGGGHHH-HHHHHHHH-TCCEEEEE--CCCSSC-EEECSSCC----------CSGGG---CCTTE
T ss_pred HHHHccCccceEEEeccchHHH-HHHHHHhc-CCceEEEE--eeecch-HHHHHHHH----------HHHHh---cCCCC
Confidence 9998887 68899999999543 44444332 22222211 111110 11000000 01111 13456
Q ss_pred EEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhc--CCcEEEEEecccccccCCCCcceeEecCC----
Q 003924 270 LIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA--RKTMFLIVTDVAARGIDIPLLDNVINWDF---- 343 (786)
Q Consensus 270 IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~--g~~~ILVaTdv~arGlDIp~v~~VI~~d~---- 343 (786)
||||+|+..++.++..|...++.+..+||+|++.+|..++..|++ |.++|||||+++++|||+ ++++||++++
T Consensus 324 iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~ 402 (677)
T 3rc3_A 324 CIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPS 402 (677)
T ss_dssp EEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC--
T ss_pred EEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccc
Confidence 899999999999999999999999999999999999999999999 889999999999999999 8999999999
Q ss_pred ----------CCCHhHHHHHhhccccCCCc---cEEEEEEecccHHHHHHHHHHhcCCCC
Q 003924 344 ----------PPKPKIFVHRVGRAARAGRT---GTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (786)
Q Consensus 344 ----------P~s~~~~vQRvGR~gR~G~~---G~ai~lv~~~e~~~l~~l~~~l~~~~~ 390 (786)
|.+...|+||+||+||.|.. |.|+. +.+.+...+..+......++.
T Consensus 403 ~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~-l~~~d~~~~~~~~~~~~~~i~ 461 (677)
T 3rc3_A 403 INEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTT-MNHEDLSLLKEILKRPVDPIR 461 (677)
T ss_dssp ---------CBCCHHHHHHHHTTBTCTTSSCSSEEEEE-SSTTHHHHHHHHHHSCCCCCC
T ss_pred cccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEE-EecchHHHHHHHHhcCcchhh
Confidence 88999999999999999965 55544 455566666665544444443
No 64
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.5e-33 Score=285.47 Aligned_cols=204 Identities=39% Similarity=0.629 Sum_probs=186.1
Q ss_pred CccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcC-CCCCeEEEEEcCc
Q 003924 24 GFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPT 102 (786)
Q Consensus 24 ~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~-~~~g~r~LIL~Pt 102 (786)
+|++|+|++.++++|...||..|+|+|.++++.++.++++++.+|||||||++|++|+++.+.... ...+.++||++||
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~ 81 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPT 81 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSS
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECC
Confidence 699999999999999999999999999999999999999999999999999999999999886421 2346789999999
Q ss_pred HHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccccc
Q 003924 103 RDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (786)
Q Consensus 103 reLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~ 182 (786)
++|+.|+++.+..+... +.+..++||.....+...+..+++|+|+||+++.+++.. ..+.+.++++|||||||++.+
T Consensus 82 ~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~iViDEah~~~~ 158 (207)
T 2gxq_A 82 RELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ-GVLDLSRVEVAVLDEADEMLS 158 (207)
T ss_dssp HHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH-TSSCCTTCSEEEEESHHHHHH
T ss_pred HHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc-CCcchhhceEEEEEChhHhhc
Confidence 99999999999998754 788899999988888777778899999999999998876 467789999999999999999
Q ss_pred CChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeec
Q 003924 183 MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLD 230 (786)
Q Consensus 183 ~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~ 230 (786)
.+|...+..++..++..+|+++||||+|+.+..+++.++.+|..+.++
T Consensus 159 ~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~~ 206 (207)
T 2gxq_A 159 MGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINVI 206 (207)
T ss_dssp TTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEECC
T ss_pred cchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEcC
Confidence 999999999999999999999999999999999999999999877653
No 65
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.4e-33 Score=289.55 Aligned_cols=208 Identities=31% Similarity=0.551 Sum_probs=179.8
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~ 100 (786)
...+|++++|++.++++|..+||..|+|+|.++++.++.++++++.+|||||||++|++|+++.+... ..+.++||++
T Consensus 12 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~--~~~~~~lil~ 89 (224)
T 1qde_A 12 VVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS--VKAPQALMLA 89 (224)
T ss_dssp CCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT--CCSCCEEEEC
T ss_pred ccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc--CCCceEEEEE
Confidence 34689999999999999999999999999999999999999999999999999999999999988643 2466899999
Q ss_pred CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccc
Q 003924 101 PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL 180 (786)
Q Consensus 101 PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l 180 (786)
||++|+.|+++.+..++...++.+..++||.....+...+.. ++|+|+||++|.+++.. ..+.+.++++|||||||++
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~-~~~~~~~~~~iViDEah~~ 167 (224)
T 1qde_A 90 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQR-RRFRTDKIKMFILDEADEM 167 (224)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHT-TSSCCTTCCEEEEETHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHh-CCcchhhCcEEEEcChhHH
Confidence 999999999999999998889999999999887766655544 99999999999998876 4677889999999999999
Q ss_pred ccCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccc
Q 003924 181 FGMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD 232 (786)
Q Consensus 181 ~~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~ 232 (786)
.+++|...+..++..++..+|+++||||+|+.+..+++.++.+|..+.++.+
T Consensus 168 ~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 168 LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp HHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred hhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999999999999999999999999999999999999999999988876543
No 66
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.6e-33 Score=343.79 Aligned_cols=318 Identities=19% Similarity=0.203 Sum_probs=224.8
Q ss_pred CChHHHHHHHHHHHcC--CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCC
Q 003924 45 VPTPIQRKTMPLILSG--ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g--~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l 122 (786)
.|+|+|..++..++.. ..++++++||+|||++++..+.+.+... ...++|||||+ .|+.||...+.... ++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g---~~~rvLIVvP~-sLl~Qw~~E~~~~f---~l 225 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG---AAERVLIIVPE-TLQHQWLVEMLRRF---NL 225 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS---SCCCEEEECCT-TTHHHHHHHHHHHS---CC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC---CCCeEEEEeCH-HHHHHHHHHHHHHh---CC
Confidence 7999999999988874 4799999999999999988777666543 23479999999 99999998885543 46
Q ss_pred eEEEEEcCCChhHHHH---HHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChH-HHHHHHHhhc-c
Q 003924 123 RISLLVGGDSMESQFE---ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA-EQLHKILGQL-S 197 (786)
Q Consensus 123 ~v~~l~gg~~~~~~~~---~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~-~~l~~Il~~l-~ 197 (786)
.+..+.|+.. ..... ......+|+|+|++.+.........+....+++|||||||++...+.. .....++..+ .
T Consensus 226 ~v~v~~~~~~-~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~ 304 (968)
T 3dmq_A 226 RFALFDDERY-AEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAE 304 (968)
T ss_dssp CCEECCHHHH-HHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHT
T ss_pred CEEEEccchh-hhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhh
Confidence 6665544322 21111 112357899999998864332212244567899999999999754421 1112223333 2
Q ss_pred cCCceEEEeccCcH----HHHH----------------------------HHHhcCCC---------------------C
Q 003924 198 ENRQTLLFSATLPS----ALAE----------------------------FAKAGLRD---------------------P 224 (786)
Q Consensus 198 ~~~q~ll~SATl~~----~l~~----------------------------~~~~~l~~---------------------p 224 (786)
...+++++||||.. ++.. .....+.. +
T Consensus 305 ~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~ 384 (968)
T 3dmq_A 305 HVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEP 384 (968)
T ss_dssp TCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSST
T ss_pred cCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHH
Confidence 45679999999832 0000 01000000 0
Q ss_pred cceeecc------------------------------ccccCC----Ccee-----------------------------
Q 003924 225 HLVRLDV------------------------------DTKISP----DLKL----------------------------- 241 (786)
Q Consensus 225 ~~i~~~~------------------------------~~~~~~----~l~~----------------------------- 241 (786)
.+..... ...... ....
T Consensus 385 l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (968)
T 3dmq_A 385 LLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRA 464 (968)
T ss_dssp TGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGT
T ss_pred HHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHH
Confidence 0000000 000000 0000
Q ss_pred ----------------eeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHH-cCCCceeecCCCCHHH
Q 003924 242 ----------------AFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE-EGLEPSVCYGDMDQDA 304 (786)
Q Consensus 242 ----------------~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~-~g~~v~~lhg~l~q~~ 304 (786)
....+....|...|..++.. ..+.++||||+++.+++.++..|.. .|+.+..+||+|++.+
T Consensus 465 ~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~ 542 (968)
T 3dmq_A 465 RDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIE 542 (968)
T ss_dssp HHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTH
T ss_pred hhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHH
Confidence 00122344578888888876 3678999999999999999999994 6999999999999999
Q ss_pred HHHHHHHHhcCC--cEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEec
Q 003924 305 RKIHVSRFRARK--TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTS 372 (786)
Q Consensus 305 R~~~l~~F~~g~--~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~ 372 (786)
|..+++.|++|+ ++|||||+++++|||+|.+++||+||+|+++..|+||+||+||.|+.|.+++++..
T Consensus 543 R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~ 612 (968)
T 3dmq_A 543 RDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPY 612 (968)
T ss_dssp HHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEE
T ss_pred HHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEec
Confidence 999999999998 99999999999999999999999999999999999999999999999866655443
No 67
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=8.5e-32 Score=310.00 Aligned_cols=320 Identities=20% Similarity=0.218 Sum_probs=241.6
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
+|+ .|+++|.-..-.+..|+ |+...||+|||+++.+|++-.... |..+.||+|++.||.|-++++..+..+.
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~-----G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI-----GKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT-----SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc-----CCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 677 79999999998888886 999999999999999999755432 6679999999999999999999999999
Q ss_pred CCeEEEEEcC--------------------------------------------------CChhHHHHHHcCCCCEEEEC
Q 003924 121 DLRISLLVGG--------------------------------------------------DSMESQFEELAQNPDIIIAT 150 (786)
Q Consensus 121 ~l~v~~l~gg--------------------------------------------------~~~~~~~~~l~~~~dIiV~T 150 (786)
|+++++++.. .+.++...+. .|||+++|
T Consensus 144 glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DItYgT 221 (822)
T 3jux_A 144 GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVTYGT 221 (822)
T ss_dssp TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEEEEE
T ss_pred CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCEEcc
Confidence 9999999982 2222222222 47999999
Q ss_pred cHHH-HHHHhhc-----cCCCCCceeeEEeCCccccccC---------C-------hHHH--------------------
Q 003924 151 PGRL-MHHLSEV-----EDMSLKSVEYVVFDEADCLFGM---------G-------FAEQ-------------------- 188 (786)
Q Consensus 151 pgrl-l~~l~~~-----~~l~l~~l~~vV~DEah~l~~~---------g-------f~~~-------------------- 188 (786)
..-| +++|..+ ...-...+.+.|+||+|.++-. | ....
T Consensus 222 n~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~ 301 (822)
T 3jux_A 222 NNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKA 301 (822)
T ss_dssp HHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSS
T ss_pred CcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEccc
Confidence 9766 4455431 1222456789999999975400 0 0000
Q ss_pred ------------H------------------HHHHhhc------c-----------------------------------
Q 003924 189 ------------L------------------HKILGQL------S----------------------------------- 197 (786)
Q Consensus 189 ------------l------------------~~Il~~l------~----------------------------------- 197 (786)
+ ..|...+ .
T Consensus 302 ~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQa 381 (822)
T 3jux_A 302 RTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQA 381 (822)
T ss_dssp SCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHH
T ss_pred CeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHH
Confidence 0 0000000 0
Q ss_pred ----------c----------------CCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHH
Q 003924 198 ----------E----------------NRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEK 251 (786)
Q Consensus 198 ----------~----------------~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k 251 (786)
+ -..+.+||+|...+..+|...|-- .++.+..............+.....+|
T Consensus 382 iEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l--~vv~IPtnkp~~R~d~~d~vy~t~~eK 459 (822)
T 3jux_A 382 IEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGM--EVVVIPTHKPMIRKDHDDLVFRTQKEK 459 (822)
T ss_dssp HHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCC--CEEECCCSSCCCCEECCCEEESSHHHH
T ss_pred HHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCC--eEEEECCCCCcceeecCcEEEecHHHH
Confidence 0 015789999998888888777633 334343322211111223455677889
Q ss_pred HHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccC
Q 003924 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGID 331 (786)
Q Consensus 252 ~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlD 331 (786)
...++..+.+....+.++||||+|+..++.++..|...|+++.++||+..+.++..+...|+.| .|+||||+|+||+|
T Consensus 460 ~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtD 537 (822)
T 3jux_A 460 YEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTD 537 (822)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCC
T ss_pred HHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcC
Confidence 9999999987655678999999999999999999999999999999996555555555666655 59999999999999
Q ss_pred CC--------CcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEeccc
Q 003924 332 IP--------LLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (786)
Q Consensus 332 Ip--------~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e 374 (786)
|+ +..+||++++|.++..|+||+||+||+|.+|.+++|++.+|
T Consensus 538 I~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 538 IKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp CCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTS
T ss_pred ccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhH
Confidence 98 66799999999999999999999999999999999999987
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=3e-33 Score=286.48 Aligned_cols=205 Identities=29% Similarity=0.567 Sum_probs=183.7
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~ 100 (786)
...+|++++|++.++++|..+||..|+|+|.++++.++.++++++.+|||||||++|++|+++.+... ..+.++|||+
T Consensus 12 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~--~~~~~~lil~ 89 (220)
T 1t6n_A 12 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV--TGQVSVLVMC 89 (220)
T ss_dssp --CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC--TTCCCEEEEC
T ss_pred cCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc--CCCEEEEEEe
Confidence 34679999999999999999999999999999999999999999999999999999999999887542 2356899999
Q ss_pred CcHHHHHHHHHHHHHHccCC-CCeEEEEEcCCChhHHHHHHc-CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcc
Q 003924 101 PTRDLALQTLKFTKELGRYT-DLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (786)
Q Consensus 101 PtreLa~Q~~~~l~~l~~~~-~l~v~~l~gg~~~~~~~~~l~-~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah 178 (786)
||++|+.|+++.+..+.... ++++..++||.....+...+. ..++|+|+||+++.+++.. ..+.+.++++|||||||
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~-~~~~~~~~~~lViDEah 168 (220)
T 1t6n_A 90 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN-KSLNLKHIKHFILDECD 168 (220)
T ss_dssp SCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT-TSSCCTTCCEEEEESHH
T ss_pred CCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh-CCCCcccCCEEEEcCHH
Confidence 99999999999999998776 799999999998877776665 4679999999999998876 45778999999999999
Q ss_pred cccc-CChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCCccee
Q 003924 179 CLFG-MGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKAGLRDPHLVR 228 (786)
Q Consensus 179 ~l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~ 228 (786)
++++ .+|...+..++..++..+|+++||||+|..+..+++.++.+|..|.
T Consensus 169 ~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 169 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp HHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred HHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 9987 5888999999999998999999999999999999999999997764
No 69
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=1.6e-32 Score=315.52 Aligned_cols=312 Identities=17% Similarity=0.257 Sum_probs=222.6
Q ss_pred CChHHHHHHHHHHH----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 45 ~ptpiQ~~aip~il----~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.|+|+|.++++.+. .+.++++.++||+|||++++..+...... ....++|||||+ .|+.||.+++..+..
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~---~~~~~~LIv~P~-~l~~qw~~e~~~~~~-- 110 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE---NELTPSLVICPL-SVLKNWEEELSKFAP-- 110 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT---TCCSSEEEEECS-TTHHHHHHHHHHHCT--
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc---CCCCCEEEEccH-HHHHHHHHHHHHHCC--
Confidence 69999999998774 57899999999999999976555443322 134579999995 588999999998863
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCC
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENR 200 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~ 200 (786)
++.+..+.|+... .....++|+|+||+.+..... +....+++||+||||++.+.+ ......+..++ ..
T Consensus 111 ~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l~-~~ 178 (500)
T 1z63_A 111 HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKELK-SK 178 (500)
T ss_dssp TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTSC-EE
T ss_pred CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccccCCHh--HHHHHHHHhhc-cC
Confidence 4667666665432 123468999999999865432 334468899999999997654 23445555564 46
Q ss_pred ceEEEeccCcH----HHHHHHH---------------------------------hcCCCCcceeeccc-----cccCCC
Q 003924 201 QTLLFSATLPS----ALAEFAK---------------------------------AGLRDPHLVRLDVD-----TKISPD 238 (786)
Q Consensus 201 q~ll~SATl~~----~l~~~~~---------------------------------~~l~~p~~i~~~~~-----~~~~~~ 238 (786)
+.+++||||.. ++..++. ..+ .|..++.... ...++.
T Consensus 179 ~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~lp~~ 257 (500)
T 1z63_A 179 YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDLPDK 257 (500)
T ss_dssp EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTSCSE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcCCCC
Confidence 78999999832 1111111 011 1222211110 011111
Q ss_pred ceee-eee-------------------------------------------------------cchHHHHHHHHHHHHHh
Q 003924 239 LKLA-FFT-------------------------------------------------------LRQEEKHAALLYMIREH 262 (786)
Q Consensus 239 l~~~-~~~-------------------------------------------------------v~~~~k~~~Ll~lL~~~ 262 (786)
.... ++. +....|...+..++.+.
T Consensus 258 ~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~ 337 (500)
T 1z63_A 258 IETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEA 337 (500)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHH
Confidence 1110 011 11234566677777777
Q ss_pred ccCCCcEEEEEcchhhHHHHHHHHHHc-CCCceeecCCCCHHHHHHHHHHHhcC-CcE-EEEEecccccccCCCCcceeE
Q 003924 263 ISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRAR-KTM-FLIVTDVAARGIDIPLLDNVI 339 (786)
Q Consensus 263 ~~~~~k~IVF~~t~~~ae~l~~~L~~~-g~~v~~lhg~l~q~~R~~~l~~F~~g-~~~-ILVaTdv~arGlDIp~v~~VI 339 (786)
...+.++||||.+...++.+...|... ++.+..+||++++.+|..+++.|+++ ... +||+|+++++|+|+|.+++||
T Consensus 338 ~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi 417 (500)
T 1z63_A 338 LDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI 417 (500)
T ss_dssp HTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE
T ss_pred HccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE
Confidence 778899999999999999999999885 99999999999999999999999998 555 789999999999999999999
Q ss_pred ecCCCCCHhHHHHHhhccccCCCccEE--EEEEecccH
Q 003924 340 NWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSEDM 375 (786)
Q Consensus 340 ~~d~P~s~~~~vQRvGR~gR~G~~G~a--i~lv~~~e~ 375 (786)
+||+|+++..|.||+||++|.|+.+.+ |.|++.+.+
T Consensus 418 ~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ti 455 (500)
T 1z63_A 418 HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTL 455 (500)
T ss_dssp ESSCCSCC---CHHHHTTTTTTTTSCEEEEEEEETTSH
T ss_pred EeCCCCCcchHHHHHHHHHHcCCCCeeEEEEEEeCCCH
Confidence 999999999999999999999987655 666666543
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.6e-33 Score=288.45 Aligned_cols=210 Identities=34% Similarity=0.558 Sum_probs=180.8
Q ss_pred CCCccCC----CCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEE
Q 003924 22 SGGFESL----NLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRAL 97 (786)
Q Consensus 22 ~~~f~~l----gLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~L 97 (786)
..+|+++ +|++.++++|..+||..|||+|.++|+.++.|+++++.||||||||++|++|+++.+... ...+.++|
T Consensus 24 ~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~~l 102 (245)
T 3dkp_A 24 IATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQP-ANKGFRAL 102 (245)
T ss_dssp CSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSC-CSSSCCEE
T ss_pred ccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhc-ccCCceEE
Confidence 4578887 899999999999999999999999999999999999999999999999999999988642 23467899
Q ss_pred EEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHH-HHHcCCCCEEEECcHHHHHHHhhcc-CCCCCceeeEEeC
Q 003924 98 ILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQF-EELAQNPDIIIATPGRLMHHLSEVE-DMSLKSVEYVVFD 175 (786)
Q Consensus 98 IL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~-~~l~~~~dIiV~Tpgrll~~l~~~~-~l~l~~l~~vV~D 175 (786)
||+||++|+.|+++.+..++...++.+..++|+......+ .....+++|+|+||++|.+++.... .+.+.++++||||
T Consensus 103 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViD 182 (245)
T 3dkp_A 103 IISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVD 182 (245)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEES
T ss_pred EEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEe
Confidence 9999999999999999999988899988888765433322 1234578999999999999987632 4678999999999
Q ss_pred Ccccccc---CChHHHHHHHHhhc-ccCCceEEEeccCcHHHHHHHHhcCCCCcceeeccc
Q 003924 176 EADCLFG---MGFAEQLHKILGQL-SENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVD 232 (786)
Q Consensus 176 Eah~l~~---~gf~~~l~~Il~~l-~~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~ 232 (786)
|||++++ .+|...+..++..+ +...|+++||||+|+.+..++..++.+|..+.+...
T Consensus 183 Eah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 183 ESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp SHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred ChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 9999987 68999999998776 457899999999999999999999999998877653
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.98 E-value=9.7e-32 Score=329.44 Aligned_cols=314 Identities=16% Similarity=0.134 Sum_probs=218.6
Q ss_pred CCChHHHHHHHHHHHc--------------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHH
Q 003924 44 KVPTPIQRKTMPLILS--------------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (786)
Q Consensus 44 ~~ptpiQ~~aip~il~--------------g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~ 109 (786)
..|+|+|..|++.++. +++++++++||||||+++ ++++..+... ....++|||||+++|+.|+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~--~~~~rvLvlvpr~eL~~Q~ 346 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL--DFIDKVFFVVDRKDLDYQT 346 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--TTCCEEEEEECGGGCCHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--CCCceEEEEeCcHHHHHHH
Confidence 3699999999999886 368999999999999997 6666555432 2346899999999999999
Q ss_pred HHHHHHHccCCCCeEEEEEcCCChhHHHHHHc-CCCCEEEECcHHHHHHHhhccCC-CCCceeeEEeCCccccccCChHH
Q 003924 110 LKFTKELGRYTDLRISLLVGGDSMESQFEELA-QNPDIIIATPGRLMHHLSEVEDM-SLKSVEYVVFDEADCLFGMGFAE 187 (786)
Q Consensus 110 ~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~-~~~dIiV~Tpgrll~~l~~~~~l-~l~~l~~vV~DEah~l~~~gf~~ 187 (786)
.+.+..|+.. .+.++.+...+...+. .+++|+|+||++|..++.....+ .+....+||+||||++.. ..
T Consensus 347 ~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~ 417 (1038)
T 2w00_A 347 MKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GE 417 (1038)
T ss_dssp HHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HH
T ss_pred HHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hH
Confidence 9999887643 2345566666666664 57999999999999887652222 356788999999999663 33
Q ss_pred HHHHHHhhcccCCceEEEeccCcHH--------H-------------HHHHHhcCCCCcceeecc-cccc-----C-C--
Q 003924 188 QLHKILGQLSENRQTLLFSATLPSA--------L-------------AEFAKAGLRDPHLVRLDV-DTKI-----S-P-- 237 (786)
Q Consensus 188 ~l~~Il~~l~~~~q~ll~SATl~~~--------l-------------~~~~~~~l~~p~~i~~~~-~~~~-----~-~-- 237 (786)
.+..|+..+| +.++|+|||||... . .+.+..+..-|..+.... .... . .
T Consensus 418 ~~~~I~~~~p-~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~ 496 (1038)
T 2w00_A 418 AQKNLKKKFK-RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEK 496 (1038)
T ss_dssp HHHHHHHHCS-SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHH
T ss_pred HHHHHHHhCC-cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHH
Confidence 4556667776 57999999999632 1 112222222232211110 0000 0 0
Q ss_pred ---CceeeeeecchHHHHHHHHHHHHHhc----------cCCCcEEEEEcchhhHHHHHHHHHHcC------------CC
Q 003924 238 ---DLKLAFFTLRQEEKHAALLYMIREHI----------SSDQQTLIFVSTKHHVEFLNVLFREEG------------LE 292 (786)
Q Consensus 238 ---~l~~~~~~v~~~~k~~~Ll~lL~~~~----------~~~~k~IVF~~t~~~ae~l~~~L~~~g------------~~ 292 (786)
.+..... +....+...++..+.+.. ..+.++||||+++.+|..++..|...+ +.
T Consensus 497 ~~~~i~~~~~-l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k 575 (1038)
T 2w00_A 497 KLSAAENQQA-FLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLR 575 (1038)
T ss_dssp HHHHTCSTTT-TTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCC
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCc
Confidence 0000001 112333344443332211 134689999999999999999998754 45
Q ss_pred ce-eecCC----------C----------CHH-----------------------------HHHHHHHHHhcCCcEEEEE
Q 003924 293 PS-VCYGD----------M----------DQD-----------------------------ARKIHVSRFRARKTMFLIV 322 (786)
Q Consensus 293 v~-~lhg~----------l----------~q~-----------------------------~R~~~l~~F~~g~~~ILVa 322 (786)
+. ++||+ + ++. .|..++.+|++|+++||||
T Consensus 576 ~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIv 655 (1038)
T 2w00_A 576 IATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIV 655 (1038)
T ss_dssp EEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEE
T ss_pred EEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEE
Confidence 54 44542 2 221 4788999999999999999
Q ss_pred ecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCc----cEEEEEEec
Q 003924 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRT----GTAFSFVTS 372 (786)
Q Consensus 323 Tdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~----G~ai~lv~~ 372 (786)
|+++.+|+|+|.+ +|+++|.|.+...|+|++||++|.+.. |.++.|+..
T Consensus 656 vd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 656 VGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp SSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred cchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 9999999999999 778899999999999999999998764 778877764
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.97 E-value=5.6e-29 Score=301.75 Aligned_cols=319 Identities=16% Similarity=0.225 Sum_probs=232.2
Q ss_pred CChHHHHHHHHHHH----cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 45 VPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 45 ~ptpiQ~~aip~il----~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.|+|+|.+++..++ .+.++|+..+||+|||+.++..+...+.... ....+||||| ..|+.||.+.+..+. .
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~--~~~~~LIV~P-~sll~qW~~E~~~~~--p 310 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR--QNGPHIIVVP-LSTMPAWLDTFEKWA--P 310 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS--CCSCEEEECC-TTTHHHHHHHHHHHS--T
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC--CCCCEEEEEC-chHHHHHHHHHHHHC--C
Confidence 79999999998776 7889999999999999987766655443321 2345899999 668899999988876 4
Q ss_pred CCeEEEEEcCCChhHHHHH------------HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHH
Q 003924 121 DLRISLLVGGDSMESQFEE------------LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQ 188 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~------------l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~ 188 (786)
++.+.+++|+......... ....++|+|+|++.+...... +....+++|||||||++-..+ ..
T Consensus 311 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~lkn~~--s~ 385 (800)
T 3mwy_W 311 DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRLKNAE--SS 385 (800)
T ss_dssp TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGGCCSS--SH
T ss_pred CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhhcCch--hH
Confidence 5777777776654443332 124678999999999776543 333467899999999986533 35
Q ss_pred HHHHHhhcccCCceEEEeccC----cHHHHHHHHhcC-----------------------------CCCcceeecccc--
Q 003924 189 LHKILGQLSENRQTLLFSATL----PSALAEFAKAGL-----------------------------RDPHLVRLDVDT-- 233 (786)
Q Consensus 189 l~~Il~~l~~~~q~ll~SATl----~~~l~~~~~~~l-----------------------------~~p~~i~~~~~~-- 233 (786)
+...+..+. ....+++|||| ..++..++.... -.|.+++-....
T Consensus 386 ~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~ 464 (800)
T 3mwy_W 386 LYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVE 464 (800)
T ss_dssp HHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGT
T ss_pred HHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhh
Confidence 555666664 45568899998 222222222110 011111110000
Q ss_pred -ccCCCcee-eeee------------------------------------------------------------------
Q 003924 234 -KISPDLKL-AFFT------------------------------------------------------------------ 245 (786)
Q Consensus 234 -~~~~~l~~-~~~~------------------------------------------------------------------ 245 (786)
..++.... .++.
T Consensus 465 ~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~ 544 (800)
T 3mwy_W 465 KSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTR 544 (800)
T ss_dssp TTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCS
T ss_pred hccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccH
Confidence 00000000 0000
Q ss_pred -------cchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCc-
Q 003924 246 -------LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKT- 317 (786)
Q Consensus 246 -------v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~- 317 (786)
+....|...|..+|......+.++||||.....++.|...|...|+.+..+||+++..+|..+++.|+++..
T Consensus 545 ~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~ 624 (800)
T 3mwy_W 545 ENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSN 624 (800)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCS
T ss_pred HHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCC
Confidence 012346667778888777788999999999999999999999999999999999999999999999998654
Q ss_pred --EEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCcc--EEEEEEeccc
Q 003924 318 --MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVTSED 374 (786)
Q Consensus 318 --~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G--~ai~lv~~~e 374 (786)
.+|++|.+++.|||+|.+++||+||+|++|..++||+||++|.|+.. .+|.|++.+.
T Consensus 625 ~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 625 DFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp CCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred ceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 48999999999999999999999999999999999999999999864 5566777653
No 73
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=3e-28 Score=288.51 Aligned_cols=322 Identities=16% Similarity=0.208 Sum_probs=223.3
Q ss_pred CChHHHHHHHHHHH---------cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCC--CCCeEEEEEcCcHHHHHHHHHHH
Q 003924 45 VPTPIQRKTMPLIL---------SGADVVAMARTGSGKTAAFLVPMLQRLNQHVP--QGGVRALILSPTRDLALQTLKFT 113 (786)
Q Consensus 45 ~ptpiQ~~aip~il---------~g~dvvl~a~TGSGKT~afllpile~L~~~~~--~~g~r~LIL~PtreLa~Q~~~~l 113 (786)
.|+|+|.+++..+. .+..+|+..+||+|||+.++..+...+..... ....++|||||+ .|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999999875 34679999999999999988777765544321 123469999997 7889999999
Q ss_pred HHHccCCCCeEEEEEcCCChhH--HHHHH-c-----CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCCh
Q 003924 114 KELGRYTDLRISLLVGGDSMES--QFEEL-A-----QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF 185 (786)
Q Consensus 114 ~~l~~~~~l~v~~l~gg~~~~~--~~~~l-~-----~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf 185 (786)
..+... .+.+..+.+|..... ..... . ..++|+|+|++.+..... .+....+++||+||||++-+..
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~---~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE---VLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT---TTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH---HhhcCCccEEEEECceecCChh-
Confidence 888644 466677777654322 12222 1 147899999999876543 3445678899999999987644
Q ss_pred HHHHHHHHhhcccCCceEEEeccCcHH-------HHHHH------------HhcC-------------------------
Q 003924 186 AEQLHKILGQLSENRQTLLFSATLPSA-------LAEFA------------KAGL------------------------- 221 (786)
Q Consensus 186 ~~~l~~Il~~l~~~~q~ll~SATl~~~-------l~~~~------------~~~l------------------------- 221 (786)
......+..+. ....+++||||-.. +..|+ ..+.
T Consensus 209 -~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 -NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp -HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred -hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 33344444554 56789999998211 11111 0000
Q ss_pred ----CCCcceeeccc---cccCCCceee-eee------------------------------------------------
Q 003924 222 ----RDPHLVRLDVD---TKISPDLKLA-FFT------------------------------------------------ 245 (786)
Q Consensus 222 ----~~p~~i~~~~~---~~~~~~l~~~-~~~------------------------------------------------ 245 (786)
-.|.+++-... ...++..... ++.
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 00000000000 0000000000 000
Q ss_pred ----------------------------cchHHHHHHHHHHHHHhc-cCCCcEEEEEcchhhHHHHHHHHHHcCCCceee
Q 003924 246 ----------------------------LRQEEKHAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC 296 (786)
Q Consensus 246 ----------------------------v~~~~k~~~Ll~lL~~~~-~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~l 296 (786)
.....|...|..++.... ..+.++||||++..+++.+...|...|+.+..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 011233334444444322 247899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCc---EEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCcc--EEEEEEe
Q 003924 297 YGDMDQDARKIHVSRFRARKT---MFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTG--TAFSFVT 371 (786)
Q Consensus 297 hg~l~q~~R~~~l~~F~~g~~---~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G--~ai~lv~ 371 (786)
||++++.+|..+++.|+++.. .+||+|++++.|||++.+++||+||+|+++..+.|++||++|.|+.. .+|.|++
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~ 526 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLS 526 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEE
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEE
Confidence 999999999999999999875 48999999999999999999999999999999999999999999865 4566777
Q ss_pred ccc
Q 003924 372 SED 374 (786)
Q Consensus 372 ~~e 374 (786)
.+.
T Consensus 527 ~~t 529 (644)
T 1z3i_X 527 TGT 529 (644)
T ss_dssp TTS
T ss_pred CCC
Confidence 653
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=1.1e-27 Score=280.45 Aligned_cols=319 Identities=19% Similarity=0.217 Sum_probs=234.4
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
+|| .|||+|..++|.+++|+ |+.++||||||++|++|++..... |.+++||+||++||.|.++++..+..++
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~-----G~qv~VvTPTreLA~Qdae~m~~l~~~l 147 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT-----GKGVHVVTVNDYLARRDAEWMGPVYRGL 147 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT-----CSCCEEEESSHHHHHHHHHHHHHHHHTT
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh-----CCCEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 799 99999999999999998 999999999999999999654432 5579999999999999999999999999
Q ss_pred CCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHH-HHHHhhcc-----CCCCC---ceeeEEeCCccccc-cCC------
Q 003924 121 DLRISLLVGGDSMESQFEELAQNPDIIIATPGRL-MHHLSEVE-----DMSLK---SVEYVVFDEADCLF-GMG------ 184 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrl-l~~l~~~~-----~l~l~---~l~~vV~DEah~l~-~~g------ 184 (786)
++++.+++||.+...... ..+++|+|+||++| ++++...- .+.+. .+.++|+||+|+++ +.+
T Consensus 148 GLsv~~i~Gg~~~~~r~~--ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiDeartPLII 225 (997)
T 2ipc_A 148 GLSVGVIQHASTPAERRK--AYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILIDEARTPLII 225 (997)
T ss_dssp TCCEEECCTTCCHHHHHH--HHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTSSTTSCEEE
T ss_pred CCeEEEEeCCCCHHHHHH--HcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHhCCCCCeee
Confidence 999999999988544333 34699999999999 88887631 34577 89999999999987 221
Q ss_pred ---------hHHHHHHHHhhcccC--------------------------------------------------------
Q 003924 185 ---------FAEQLHKILGQLSEN-------------------------------------------------------- 199 (786)
Q Consensus 185 ---------f~~~l~~Il~~l~~~-------------------------------------------------------- 199 (786)
....+..++..++.+
T Consensus 226 Sgp~~~~~~lY~~~~~~i~~L~~~~~~~~~~~~~~~~dy~vdek~r~v~LTe~G~~~~E~~l~i~~Ly~~~n~~l~~~i~ 305 (997)
T 2ipc_A 226 SGPAEKATDLYYKMAEIAKKLERGLPAEPGVRKEPTGDYTVEEKNRSVHLTLQGIAKAEKLLGIEGLFSPENMELAHMLI 305 (997)
T ss_dssp EESCSSCHHHHHHHHHHHHHSCCCCCCCSSSCCCSSCCCCCTTSCCCCCCCHHHHHHHHHHHSCHHHHTTTCHHHHHHHH
T ss_pred eCCCccchHHHHHHHHHHHHhhhccccccccccCCCCCeEEecCcceEEEchHHHHHHHHHcCCccccCchhHHHHHHHH
Confidence 112233333333221
Q ss_pred -------------------------------------------------------------------------CceEEEe
Q 003924 200 -------------------------------------------------------------------------RQTLLFS 206 (786)
Q Consensus 200 -------------------------------------------------------------------------~q~ll~S 206 (786)
..+.+||
T Consensus 306 ~ALrA~~lf~rd~dYiV~dgeV~IVDe~TGR~m~grrwsdGLHQAiEAKEgv~I~~e~~TlAsIT~QnyFr~Y~kLsGMT 385 (997)
T 2ipc_A 306 QAIRAKELYHRDRDYIVQDGQVIIVDEFTGRLMPGRRYGEGLHQAIEAKEGVRIERENQTLATITYQNFFRLYEKRAGMT 385 (997)
T ss_dssp HHHHHHHSSCHHHHEEECSSCEEEEETTTTEECTTCCCGGGHHHHHHHHTTCCCCCSCEEEEEECHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHHhcCCCeEEECCEEEEEECCCCeeCCCCcccHHHHHHHHHHhCCCCCCCceeeeeeeHHHHHHhChHheecC
Confidence 0234555
Q ss_pred ccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHH
Q 003924 207 ATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLF 286 (786)
Q Consensus 207 ATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L 286 (786)
+|...+-.+|...|--+. +.+.........-....+.....+|..+++..+.+....+.+|||+|.|....+.|+.+|
T Consensus 386 GTA~tE~~Ef~~iY~l~V--v~IPTn~p~~R~D~~d~vy~t~~~K~~AIv~eI~~~~~~GqPVLVgT~SIe~SE~LS~~L 463 (997)
T 2ipc_A 386 GTAKTEEKEFQEIYGMDV--VVVPTNRPVIRKDFPDVVYRTEKGKFYAVVEEIAEKYERGQPVLVGTISIEKSERLSQML 463 (997)
T ss_dssp SSCGGGHHHHHHHHCCCE--EECCCSSCCCCEEEEEEEESSHHHHHHHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhCCCE--EEcCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHH
Confidence 555554444444432221 111111111100111223345678888998888887778999999999999999999999
Q ss_pred H----------------------------------------------------------------------------HcC
Q 003924 287 R----------------------------------------------------------------------------EEG 290 (786)
Q Consensus 287 ~----------------------------------------------------------------------------~~g 290 (786)
. ..|
T Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 543 (997)
T 2ipc_A 464 KEPRLYLPRLEMRLELFKKASQKQQGPEWERLRKLLERPAQLKDEDLAPFEGLIPPKGNLRTAWEGLKRAVHTLAVLRQG 543 (997)
T ss_dssp HCGGGGHHHHHHHHHHHHHHHTTCCSHHHHHHHHHTSSSTTCSHHHHSGGGGGCCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhccccchhhhhhhhhhhhhhhhccccchhhhhhhhhccccccccccccccccccccccccccccccchhhhhhHHHHcC
Confidence 8 456
Q ss_pred CCceeecCCCCHHHHHHHHHHHhcCC-cEEEEEecccccccCCCCc-------------------c--------------
Q 003924 291 LEPSVCYGDMDQDARKIHVSRFRARK-TMFLIVTDVAARGIDIPLL-------------------D-------------- 336 (786)
Q Consensus 291 ~~v~~lhg~l~q~~R~~~l~~F~~g~-~~ILVaTdv~arGlDIp~v-------------------~-------------- 336 (786)
++..+++......+- .++. ..|. -.|-|||++|+||.||--- +
T Consensus 544 I~H~VLNAK~he~EA-eIIA--qAG~~GaVTIATNMAGRGTDIkLggn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (997)
T 2ipc_A 544 IPHQVLNAKHHAREA-EIVA--QAGRSKTVTIATNMAGRGTDIKLGGNPEYLAAALLEKEGFDRYEWKVELFIKKMVAGK 620 (997)
T ss_dssp CCCCEECSSSHHHHH-HHHH--TTTSTTCEEEECSSTTTTSCCCSSCCHHHHHHHTTSSSCSSTTHHHHHHHHHHHHHTC
T ss_pred CCeeeccccchHHHH-HHHH--hcCCCCeEEEEecccCCCcCeecCCCHHHHHHHHHHhhcccccccccccccccccccc
Confidence 777777765432222 2222 2343 3699999999999999743 2
Q ss_pred -----------------------------------------eeEecCCCCCHhHHHHHhhccccCCCccEEEEEEeccc
Q 003924 337 -----------------------------------------NVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSED 374 (786)
Q Consensus 337 -----------------------------------------~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e 374 (786)
+||....+.|...=.|--||+||.|.+|.+..|++-+|
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~V~e~GGLhVIGTeRhESrRIDnQLRGRaGRQGDPGsSrF~LSLeD 699 (997)
T 2ipc_A 621 EEEARALAQELGIREELLERIREIREECKQDEERVRALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDD 699 (997)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCEEESSCCSSHHHHHHHHHTSSCSSCCCEEEEEEESSS
T ss_pred hhhccccchhhhhhhhHHHHHHHhhhhhhhhhhHHHhcCCeEEEeccCCchHHHHHHHhcccccCCCCCCeEEEEECCh
Confidence 78888889999999999999999999999999988765
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=2.4e-27 Score=280.98 Aligned_cols=176 Identities=20% Similarity=0.213 Sum_probs=137.6
Q ss_pred cCCceEEEeccCcHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchh
Q 003924 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKH 277 (786)
Q Consensus 198 ~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~ 277 (786)
...|+++||||++....... . .++............ .+.......+...|+..|......+.++||||+|+.
T Consensus 379 ~~~q~i~~SAT~~~~~~~~~----~--~~~~~~~r~~~l~~p--~i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~ 450 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAHS----G--RVVEQIIRPTGLLDP--LVRVKPTENQILDLMEGIRERAARGERTLVTVLTVR 450 (664)
T ss_dssp TCSEEEEEESSCCHHHHHHC----S--EEEEECSCTTCCCCC--EEEEECSTTHHHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred hcCCEEEEecCCCHHHHHhh----h--CeeeeeeccCCCCCC--eEEEecccchHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 36789999999986532220 1 111111110000000 111122334566677777766667889999999999
Q ss_pred hHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCC-----CCCHhHHHH
Q 003924 278 HVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF-----PPKPKIFVH 352 (786)
Q Consensus 278 ~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~-----P~s~~~~vQ 352 (786)
.++.++..|...|+.+.++||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||++|. |.+...|+|
T Consensus 451 ~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQ 530 (664)
T 1c4o_A 451 MAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQ 530 (664)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHH
T ss_pred HHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999997 999999999
Q ss_pred HhhccccCCCccEEEEEEecccHHHHHHHH
Q 003924 353 RVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382 (786)
Q Consensus 353 RvGR~gR~G~~G~ai~lv~~~e~~~l~~l~ 382 (786)
|+||+||.+ .|.|++|+++.+......+.
T Consensus 531 r~GRagR~~-~G~~i~~~~~~~~~~~~~i~ 559 (664)
T 1c4o_A 531 TIGRAARNA-RGEVWLYADRVSEAMQRAIE 559 (664)
T ss_dssp HHGGGTTST-TCEEEEECSSCCHHHHHHHH
T ss_pred HHCccCcCC-CCEEEEEEcCCCHHHHHHHH
Confidence 999999985 79999999998776665554
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=1.9e-26 Score=273.17 Aligned_cols=174 Identities=19% Similarity=0.221 Sum_probs=137.7
Q ss_pred cCCceEEEeccCcHHHHHHHHhcCCCCcceeecccc--ccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcc
Q 003924 198 ENRQTLLFSATLPSALAEFAKAGLRDPHLVRLDVDT--KISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVST 275 (786)
Q Consensus 198 ~~~q~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~--~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t 275 (786)
..+|+++||||++....... .. ++...... ...+. +...........|+..|......+.++||||+|
T Consensus 385 ~~~q~i~~SAT~~~~~~~~~----~~--~~~~~~r~~~l~~p~----i~v~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t 454 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEHT----DE--MVEQIIRPTGLLDPL----IDVRPIEGQIDDLIGEIQARIERNERVLVTTLT 454 (661)
T ss_dssp TCSEEEEECSSCCHHHHHHC----SS--CEEECCCTTCCCCCE----EEEECSTTHHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred cCCCEEEEecCCChhHHHhh----hC--eeeeeecccCCCCCe----EEEecccchHHHHHHHHHHHHhcCCeEEEEECC
Confidence 46899999999986542221 11 11111110 01111 111222345566777777766678899999999
Q ss_pred hhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCC-----CCCHhHH
Q 003924 276 KHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF-----PPKPKIF 350 (786)
Q Consensus 276 ~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~-----P~s~~~~ 350 (786)
+..++.++..|...|+.+.++||++++.+|..+++.|+.|+++|||||+++++|+|+|++++||++|. |.+...|
T Consensus 455 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~ 534 (661)
T 2d7d_A 455 KKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSL 534 (661)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHH
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997 9999999
Q ss_pred HHHhhccccCCCccEEEEEEecccHHHHHHHH
Q 003924 351 VHRVGRAARAGRTGTAFSFVTSEDMAYLLDLH 382 (786)
Q Consensus 351 vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~ 382 (786)
+||+||+||. ..|.|++|+++.+......+.
T Consensus 535 iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 535 IQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp HHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred HHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 9999999998 789999999998766555443
No 77
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.94 E-value=2.3e-26 Score=231.10 Aligned_cols=174 Identities=28% Similarity=0.442 Sum_probs=138.8
Q ss_pred HHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceee
Q 003924 217 AKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVC 296 (786)
Q Consensus 217 ~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~l 296 (786)
.+.++.+|..|.+........++.+.++.+....|...|+.+|... +.++||||+++..++.++..|...++.+..+
T Consensus 8 ~~~~~~~p~~i~v~~~~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~---~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l 84 (191)
T 2p6n_A 8 SSGVDLGTENLYFQSMGAASLDVIQEVEYVKEEAKMVYLLECLQKT---PPPVLIFAEKKADVDAIHEYLLLKGVEAVAI 84 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS---CSCEEEECSCHHHHHHHHHHHHHHTCCEEEE
T ss_pred cccccCCCEEEEECCCCCCCcCceEEEEEcChHHHHHHHHHHHHhC---CCCEEEEECCHHHHHHHHHHHHHcCCcEEEE
Confidence 3557888988888877777788999999999999999999988753 5689999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecc-cH
Q 003924 297 YGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DM 375 (786)
Q Consensus 297 hg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~-e~ 375 (786)
||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.+++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 77
Q ss_pred HHHHHHHHHhcCCCCCCC
Q 003924 376 AYLLDLHLFLSKPIRAAP 393 (786)
Q Consensus 376 ~~l~~l~~~l~~~~~~~p 393 (786)
.++..+...+.......|
T Consensus 165 ~~~~~l~~~l~~~~~~~p 182 (191)
T 2p6n_A 165 SVLMDLKALLLEAKQKVP 182 (191)
T ss_dssp HHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHccCcCC
Confidence 888888777755444433
No 78
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.94 E-value=8.1e-26 Score=221.07 Aligned_cols=155 Identities=33% Similarity=0.509 Sum_probs=146.0
Q ss_pred cCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhc
Q 003924 235 ISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314 (786)
Q Consensus 235 ~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~ 314 (786)
..+++.+.|+.+....|...|..++... .+.++||||+++.+++.++..|...++.+..+||+|++.+|..+++.|++
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHT
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 3456889999999999999999999875 56799999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCC
Q 003924 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (786)
Q Consensus 315 g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~ 391 (786)
|.++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.|..++..++.+++..+..
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 160 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGFEIQK 160 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTSCCEE
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988876543
No 79
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.93 E-value=3.2e-25 Score=219.33 Aligned_cols=156 Identities=27% Similarity=0.517 Sum_probs=140.3
Q ss_pred CCCceeeeeecchHH-HHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhc
Q 003924 236 SPDLKLAFFTLRQEE-KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRA 314 (786)
Q Consensus 236 ~~~l~~~~~~v~~~~-k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~ 314 (786)
..++.+.|+.++... |...|..++... ..+++||||+++.+++.++..|...++.+..+||+|++.+|..+++.|++
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 457888898888655 999998888764 56799999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEecccccccCCCCcceeEecCCC------CCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCC
Q 003924 315 RKTMFLIVTDVAARGIDIPLLDNVINWDFP------PKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKP 388 (786)
Q Consensus 315 g~~~ILVaTdv~arGlDIp~v~~VI~~d~P------~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~ 388 (786)
|.++|||||+++++|+|+|.+++||+||+| .++..|+||+||+||.|+.|.+++|+++.+..++..++..++..
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~ 162 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNSS 162 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999 99999999999999999999999999999999999999988877
Q ss_pred CCCCC
Q 003924 389 IRAAP 393 (786)
Q Consensus 389 ~~~~p 393 (786)
+...|
T Consensus 163 ~~~~~ 167 (175)
T 2rb4_A 163 IKQLN 167 (175)
T ss_dssp CEEEC
T ss_pred ccccC
Confidence 65544
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.93 E-value=2.8e-25 Score=219.41 Aligned_cols=157 Identities=27% Similarity=0.431 Sum_probs=144.7
Q ss_pred CCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC
Q 003924 237 PDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316 (786)
Q Consensus 237 ~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~ 316 (786)
..+.+.|+.+....|...|..++... ...++||||+++.+++.++..|...++.+..+||+|++.+|..+++.|++|.
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~ 81 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ 81 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC
Confidence 46788899999999999999999875 5679999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecc-cHHHHHHHHHHhcCCCCCCCCH
Q 003924 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSE-DMAYLLDLHLFLSKPIRAAPSE 395 (786)
Q Consensus 317 ~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~-e~~~l~~l~~~l~~~~~~~p~~ 395 (786)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +..++..++..++..+...|..
T Consensus 82 ~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (172)
T 1t5i_A 82 RRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDE 161 (172)
T ss_dssp CSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC--
T ss_pred CcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChh
Confidence 999999999999999999999999999999999999999999999999999999985 5788899998888877766643
No 81
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.93 E-value=2.3e-24 Score=220.09 Aligned_cols=159 Identities=26% Similarity=0.409 Sum_probs=142.9
Q ss_pred ceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcE
Q 003924 239 LKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318 (786)
Q Consensus 239 l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ 318 (786)
+...++.+....|...|..++... .++++||||+++.+++.++..|...++.+..+||+|++.+|..+++.|++|..+
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 83 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVR 83 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCe
Confidence 345566777889999999999865 578999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCC--CCHH
Q 003924 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAA--PSEE 396 (786)
Q Consensus 319 ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~--p~~e 396 (786)
|||||+++++|||+|++++||+||+|.++..|+||+||+||.|+.|.|++|+++.+..++..++..++..+... |..+
T Consensus 84 vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 163 (212)
T 3eaq_A 84 VLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 163 (212)
T ss_dssp EEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHH
T ss_pred EEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998776543 4555
Q ss_pred HHH
Q 003924 397 EVL 399 (786)
Q Consensus 397 ~~~ 399 (786)
++.
T Consensus 164 ei~ 166 (212)
T 3eaq_A 164 EVL 166 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 82
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.93 E-value=3.2e-25 Score=217.15 Aligned_cols=155 Identities=35% Similarity=0.581 Sum_probs=139.4
Q ss_pred CceeeeeecchHH-HHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC
Q 003924 238 DLKLAFFTLRQEE-KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316 (786)
Q Consensus 238 ~l~~~~~~v~~~~-k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~ 316 (786)
++.+.|+.+.... |...|..++... .++++||||+++.+++.++..|...++.+..+||+|++.+|..+++.|++|.
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~ 80 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS 80 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 5677888888777 999999999875 5689999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCCCCC
Q 003924 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRAAPS 394 (786)
Q Consensus 317 ~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~~p~ 394 (786)
.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+..++..++.+++..+...|.
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPS 158 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCS
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887766553
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.92 E-value=4.6e-25 Score=220.50 Aligned_cols=161 Identities=31% Similarity=0.491 Sum_probs=132.1
Q ss_pred ccccCCCceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHH
Q 003924 232 DTKISPDLKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSR 311 (786)
Q Consensus 232 ~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~ 311 (786)
.....+++.+.|+.+....|...|..+|... ..+.++||||+++..++.++..|...++.+..+||+|++.+|..+++.
T Consensus 13 ~~~~~~~i~q~~~~v~~~~K~~~L~~ll~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~ 91 (185)
T 2jgn_A 13 QGSTSENITQKVVWVEESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQ 91 (185)
T ss_dssp ---CCTTEEEEEEECCGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHH
T ss_pred cCCCCCCceEEEEEeCcHHHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHH
Confidence 3345678899999999999999999999874 357899999999999999999999999999999999999999999999
Q ss_pred HhcCCcEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCC
Q 003924 312 FRARKTMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA 391 (786)
Q Consensus 312 F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~ 391 (786)
|++|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+++.+..++..+..++......
T Consensus 92 f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~ 171 (185)
T 2jgn_A 92 FRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVEAKQE 171 (185)
T ss_dssp HHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCC
T ss_pred HHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888877655544
Q ss_pred CC
Q 003924 392 AP 393 (786)
Q Consensus 392 ~p 393 (786)
.|
T Consensus 172 ~~ 173 (185)
T 2jgn_A 172 VP 173 (185)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.92 E-value=7.1e-24 Score=227.39 Aligned_cols=159 Identities=27% Similarity=0.412 Sum_probs=141.8
Q ss_pred ceeeeeecchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcE
Q 003924 239 LKLAFFTLRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTM 318 (786)
Q Consensus 239 l~~~~~~v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ 318 (786)
+.+.++.+....|...|..++... .++++||||+|+..++.++..|...++.+..+||+|++.+|..++..|++|..+
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~--~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhc--CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 567788888899999999999875 478999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCCC--CCCHH
Q 003924 319 FLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIRA--APSEE 396 (786)
Q Consensus 319 ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~~--~p~~e 396 (786)
|||||+++++|||||++++||+||+|.++..|+||+||+||+|+.|.|++|+++.+..++..++..++..+.. .|..+
T Consensus 81 vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ 160 (300)
T 3i32_A 81 VLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPE 160 (300)
T ss_dssp EEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHH
T ss_pred EEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877654 34555
Q ss_pred HHH
Q 003924 397 EVL 399 (786)
Q Consensus 397 ~~~ 399 (786)
++.
T Consensus 161 ei~ 163 (300)
T 3i32_A 161 EVL 163 (300)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 85
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.89 E-value=2.4e-23 Score=211.14 Aligned_cols=168 Identities=21% Similarity=0.200 Sum_probs=124.2
Q ss_pred HCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcC-CCCCeEEEEEcCcHHHHHH-HHHHHHHHc
Q 003924 40 RKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTRDLALQ-TLKFTKELG 117 (786)
Q Consensus 40 ~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~-~~~g~r~LIL~PtreLa~Q-~~~~l~~l~ 117 (786)
......|+|+|.++++.++.++++++.+|||+|||++|++++++.+.... ...+.++||++|+++|+.| +.+.+..+.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 34556899999999999999999999999999999999999998775431 1235689999999999999 778888876
Q ss_pred cCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccC-----CCCCceeeEEeCCccccccCChHHHHH-H
Q 003924 118 RYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVED-----MSLKSVEYVVFDEADCLFGMGFAEQLH-K 191 (786)
Q Consensus 118 ~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~-----l~l~~l~~vV~DEah~l~~~gf~~~l~-~ 191 (786)
.. ++.+..+.|+......+..+..+++|+|+||++|..++..... +.+.++++|||||||++...++...+. .
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~ 186 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRH 186 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHHH
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHHH
Confidence 54 6888888888766555555555799999999999988876321 567889999999999998776555543 3
Q ss_pred HHhhc-------------ccCCceEEEecc
Q 003924 192 ILGQL-------------SENRQTLLFSAT 208 (786)
Q Consensus 192 Il~~l-------------~~~~q~ll~SAT 208 (786)
++... .+..++|++|||
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 187 YLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHhcccccccccccCCCCcceEEEeecC
Confidence 32221 156899999998
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.82 E-value=6e-25 Score=216.40 Aligned_cols=151 Identities=33% Similarity=0.590 Sum_probs=138.4
Q ss_pred Cceeeeeecch-HHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCC
Q 003924 238 DLKLAFFTLRQ-EEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARK 316 (786)
Q Consensus 238 ~l~~~~~~v~~-~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~ 316 (786)
++.+.|+.+.. ..|...|..++... .+.++||||+++.+++.++..|...++.+..+||+|++.+|..+++.|++|+
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 45667777777 78888888888763 4678999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEEEEEEecccHHHHHHHHHHhcCCCC
Q 003924 317 TMFLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAFSFVTSEDMAYLLDLHLFLSKPIR 390 (786)
Q Consensus 317 ~~ILVaTdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~ai~lv~~~e~~~l~~l~~~l~~~~~ 390 (786)
++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++.+..++..++.+++..+.
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIK 154 (170)
Confidence 99999999999999999999999999999999999999999999999999999999999998888877766554
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.89 E-value=5.3e-22 Score=230.25 Aligned_cols=305 Identities=16% Similarity=0.219 Sum_probs=172.4
Q ss_pred CCCCCChHHHHHHHHH----HHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003924 41 KGYKVPTPIQRKTMPL----ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~----il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l 116 (786)
.|| .|+|+|.+++.. +..|+++++.||||+|||++|++|++.. +.++||++||++|+.|+.+.+..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL--------KKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH--------TCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC--------CCcEEEEcCCHHHHHHHHHHHHhc
Confidence 578 899999998654 4578999999999999999999998753 468999999999999999877764
Q ss_pred ccCCCCeEEEEEcCCCh--------h------------------------HHH---------------HHHcCCCCEEEE
Q 003924 117 GRYTDLRISLLVGGDSM--------E------------------------SQF---------------EELAQNPDIIIA 149 (786)
Q Consensus 117 ~~~~~l~v~~l~gg~~~--------~------------------------~~~---------------~~l~~~~dIiV~ 149 (786)
++++..+.|.... . ..+ +.....++|||+
T Consensus 75 ----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~ 150 (540)
T 2vl7_A 75 ----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAM 150 (540)
T ss_dssp ----TCCEEEC---------------------------------------------------------CTTGGGCSEEEE
T ss_pred ----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEE
Confidence 3555555443210 0 000 111346799999
Q ss_pred CcHHHHHHHhhccCC-------CCCceeeEEeCCccccccCC-----------h---HH---------------------
Q 003924 150 TPGRLMHHLSEVEDM-------SLKSVEYVVFDEADCLFGMG-----------F---AE--------------------- 187 (786)
Q Consensus 150 Tpgrll~~l~~~~~l-------~l~~l~~vV~DEah~l~~~g-----------f---~~--------------------- 187 (786)
|+..|++..... .+ .+....+|||||||.+.... + ..
T Consensus 151 n~~~l~~~~~~~-~~~~~~~~~~~~~~~~vIiDEAHnl~~a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~ 229 (540)
T 2vl7_A 151 TYPYLFQKPIRN-SVFCNKDDCLKLEDYLIVIDEAHNLLEADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYIN 229 (540)
T ss_dssp ETHHHHSHHHHH-HHSCSSTTSCCGGGEEEEETTGGGGGGGGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ChHHhcCHHHHH-hhCcccccccCcCCCEEEEEccccHHHHHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 999998865431 21 24567899999999984310 0 00
Q ss_pred ------------------------------HHHHHHhh-----------------------------------c-ccC--
Q 003924 188 ------------------------------QLHKILGQ-----------------------------------L-SEN-- 199 (786)
Q Consensus 188 ------------------------------~l~~Il~~-----------------------------------l-~~~-- 199 (786)
.+..++.. + |..
T Consensus 230 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~ 309 (540)
T 2vl7_A 230 LLIDYMSKLIKDGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVN 309 (540)
T ss_dssp HHHHHHHTSCCSSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHH
T ss_pred HHHHHHHHhhccccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHH
Confidence 01111000 0 000
Q ss_pred ------Cc----eEEEeccCcHHHHHHHHhcCCCCcceeeccccc-----cCCCceeeeeecchHHHHHHHHHHHHHhc-
Q 003924 200 ------RQ----TLLFSATLPSALAEFAKAGLRDPHLVRLDVDTK-----ISPDLKLAFFTLRQEEKHAALLYMIREHI- 263 (786)
Q Consensus 200 ------~q----~ll~SATl~~~l~~~~~~~l~~p~~i~~~~~~~-----~~~~l~~~~~~v~~~~k~~~Ll~lL~~~~- 263 (786)
.. +|++||||++.+ .+...+ ...+..... ....+...| ..+.... ..+...|.+.+
T Consensus 310 ~~l~~~~~~~~~~IltSATL~p~~-~~~~~f-----~~~~~~~~g~~~~~~~~~l~s~f-~~r~~~~-~~~~~~l~~~~~ 381 (540)
T 2vl7_A 310 QLIEDALNVKTFKVLMSGTLPESL-TLTNSY-----KIVVNESYGRGEYYYCPNVTSEL-RKRNSNI-PIYSILLKRIYE 381 (540)
T ss_dssp HHHHHHTCCSSCEEEEESSCCTTC-CCTTEE-----EEECCCC-CCCEEEECTTCCCCG-GGHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHhcCccCCeEEEcccCCCCc-ccchhc-----CCchhheecCCcceeccccCCCc-ccccCHH-HHHHHHHHHHHH
Confidence 12 388888887620 000000 000000000 000011011 1111111 44445444433
Q ss_pred cCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEE--EecccccccCCCC----cce
Q 003924 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI--VTDVAARGIDIPL----LDN 337 (786)
Q Consensus 264 ~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILV--aTdv~arGlDIp~----v~~ 337 (786)
...+.+|||++|...++.++..|.. + ...++|.. ..|..+++.|+.+. .||+ +|+.+++|||+|+ +++
T Consensus 382 ~~~g~~lvff~S~~~~~~v~~~l~~--~-~~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~ 455 (540)
T 2vl7_A 382 NSSKSVLVFFPSYEMLESVRIHLSG--I-PVIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFES 455 (540)
T ss_dssp TCSSEEEEEESCHHHHHHHHTTCTT--S-CEEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEE
T ss_pred hCCCCEEEEeCCHHHHHHHHHHhcc--C-ceEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccE
Confidence 2467899999999999999988754 2 34566654 45778999999864 5776 8899999999997 899
Q ss_pred eEecCCCCC-H-----------------------------hHHHHHhhccccCCCccEEEEEEecc
Q 003924 338 VINWDFPPK-P-----------------------------KIFVHRVGRAARAGRTGTAFSFVTSE 373 (786)
Q Consensus 338 VI~~d~P~s-~-----------------------------~~~vQRvGR~gR~G~~G~ai~lv~~~ 373 (786)
||++++|.. + ..+.|.+||+-|....--+++++++.
T Consensus 456 Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R 521 (540)
T 2vl7_A 456 LVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSR 521 (540)
T ss_dssp EEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGG
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccc
Confidence 999999831 1 22479999999975443345555543
No 88
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.9e-22 Score=207.59 Aligned_cols=180 Identities=17% Similarity=0.219 Sum_probs=132.9
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHH
Q 003924 33 NVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKF 112 (786)
Q Consensus 33 ~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~ 112 (786)
.+...+...+...++++|.++++.+..|+++++.|+||||||++|.+++++.+.......+.++|+++|+++|+.|+++.
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~ 128 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAER 128 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHH
Confidence 33333333344468999999999999999999999999999999999998877654333356899999999999999887
Q ss_pred HHH-HccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcccc-ccCChH-HHH
Q 003924 113 TKE-LGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCL-FGMGFA-EQL 189 (786)
Q Consensus 113 l~~-l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l-~~~gf~-~~l 189 (786)
+.. ++...+..+..-...... ....+++|+|+|||+|++++.. .+.++++|||||||++ ++++|. ..+
T Consensus 129 ~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l 199 (235)
T 3llm_A 129 VAFERGEEPGKSCGYSVRFESI-----LPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVL 199 (235)
T ss_dssp HHHTTTCCTTSSEEEEETTEEE-----CCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHH
T ss_pred HHHHhccccCceEEEeechhhc-----cCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHH
Confidence 764 333444444433322110 0114588999999999999875 3789999999999986 777777 455
Q ss_pred HHHHhhcccCCceEEEeccCcHHHHHHHHhcCCCC
Q 003924 190 HKILGQLSENRQTLLFSATLPSALAEFAKAGLRDP 224 (786)
Q Consensus 190 ~~Il~~l~~~~q~ll~SATl~~~l~~~~~~~l~~p 224 (786)
..++... ++.|+++||||++... +...+...|
T Consensus 200 ~~i~~~~-~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 200 RDVVQAY-PEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp HHHHHHC-TTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred HHHHhhC-CCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 6666555 4799999999999875 554444443
No 89
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.87 E-value=1.4e-20 Score=218.82 Aligned_cols=313 Identities=18% Similarity=0.135 Sum_probs=202.1
Q ss_pred CCCCChHHHHHHHHH----HHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 42 GYKVPTPIQRKTMPL----ILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 42 g~~~ptpiQ~~aip~----il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
|| .|+|+|.+.+.. +..|+++++.||||+|||++|++|++.. +.++||++||++|+.|+.+.+..+.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~--------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV--------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH--------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC--------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 56 799999997764 4578999999999999999999999972 5689999999999999999999888
Q ss_pred cCCCCeEEEEEcCCCh---------------------------------hHHH------------------HHHcCCCCE
Q 003924 118 RYTDLRISLLVGGDSM---------------------------------ESQF------------------EELAQNPDI 146 (786)
Q Consensus 118 ~~~~l~v~~l~gg~~~---------------------------------~~~~------------------~~l~~~~dI 146 (786)
...++++.++.|+..+ ...+ +.....++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 7778888888774321 1111 223457899
Q ss_pred EEECcHHHHHHHhhccCCCC-CceeeEEeCCccccccCC-----------------------------------------
Q 003924 147 IIATPGRLMHHLSEVEDMSL-KSVEYVVFDEADCLFGMG----------------------------------------- 184 (786)
Q Consensus 147 iV~Tpgrll~~l~~~~~l~l-~~l~~vV~DEah~l~~~g----------------------------------------- 184 (786)
||+||+.|++..... .+.+ ....+|||||||.+.+ .
T Consensus 152 VV~~~~~l~~~~~~~-~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~ 229 (551)
T 3crv_A 152 IALTYPYFFIDRYRE-FIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVL 229 (551)
T ss_dssp EEEETHHHHCHHHHT-TSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCC
T ss_pred EEeCchHhcCHHHHH-hcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999886542 2332 4667999999998765 1
Q ss_pred --------------hHHHHHH----------------------------HHh----------------------------
Q 003924 185 --------------FAEQLHK----------------------------ILG---------------------------- 194 (786)
Q Consensus 185 --------------f~~~l~~----------------------------Il~---------------------------- 194 (786)
+...+.. ++.
T Consensus 230 ~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~ 309 (551)
T 3crv_A 230 PDEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLN 309 (551)
T ss_dssp SCSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHG
T ss_pred ccccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHH
Confidence 0000000 000
Q ss_pred hcccC-CceEEEeccCcHHHHHHHHhcCCC-Ccce---eeccccccCCCceeeeee--cc------hHHHHHHHHHHHHH
Q 003924 195 QLSEN-RQTLLFSATLPSALAEFAKAGLRD-PHLV---RLDVDTKISPDLKLAFFT--LR------QEEKHAALLYMIRE 261 (786)
Q Consensus 195 ~l~~~-~q~ll~SATl~~~l~~~~~~~l~~-p~~i---~~~~~~~~~~~l~~~~~~--v~------~~~k~~~Ll~lL~~ 261 (786)
.+... +.+|++|||+.+ +..+....--+ +... .+........+. ..++. ++ ...-...+...|.+
T Consensus 310 ~~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~spf~~~~-~l~v~~~~~~~~~~r~~~~~~~l~~~i~~ 387 (551)
T 3crv_A 310 LLNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKRVSGSY-ECYIGVDVTSKYDMRSDNMWKRYADYLLK 387 (551)
T ss_dssp GGGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSCCSCEE-EEEEECSCCCCTTTCCHHHHHHHHHHHHH
T ss_pred HHhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCcCCCce-EEEEeCCCCCccccCCHHHHHHHHHHHHH
Confidence 01122 688999999976 44454442222 2210 112222221111 11211 11 12223455555554
Q ss_pred hcc-CCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEe--cccccccCCC-----
Q 003924 262 HIS-SDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT--DVAARGIDIP----- 333 (786)
Q Consensus 262 ~~~-~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaT--dv~arGlDIp----- 333 (786)
.+. .++.+|||+++....+.++.. .+..+..-..+++. ...++.|+.....||++| ....+|||+|
T Consensus 388 l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~ 461 (551)
T 3crv_A 388 IYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRS 461 (551)
T ss_dssp HHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEE
T ss_pred HHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCc
Confidence 332 467899999999999998862 34333332234553 446777864445899998 6899999999
Q ss_pred CcceeEecCCCCC--------------------H----------hHHHHHhhccccCCCccEEEEEEecc
Q 003924 334 LLDNVINWDFPPK--------------------P----------KIFVHRVGRAARAGRTGTAFSFVTSE 373 (786)
Q Consensus 334 ~v~~VI~~d~P~s--------------------~----------~~~vQRvGR~gR~G~~G~ai~lv~~~ 373 (786)
.+.+||...+|.. . ..+.|.+||+-|....--+++++++.
T Consensus 462 ~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 531 (551)
T 3crv_A 462 LISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKR 531 (551)
T ss_dssp SEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGG
T ss_pred ceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehh
Confidence 4788887776621 1 11368899999975554455555553
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.84 E-value=2.6e-21 Score=205.79 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=128.4
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeE
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v 124 (786)
.|+|+|.++++.++.+.+.+++++||||||++++.++...+.. ...++|||+||++|+.|+.+.+..++...+..+
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~----~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~ 188 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN----YEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH----CSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGE
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc----CCCeEEEEECCHHHHHHHHHHHHHhcccccceE
Confidence 8999999999999999899999999999999999888876653 234799999999999999999999987777888
Q ss_pred EEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEE
Q 003924 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLL 204 (786)
Q Consensus 125 ~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll 204 (786)
..+++|..... .....++|+|+||+++.... ...+..+++|||||||++.. ..+..++..+...+++++
T Consensus 189 ~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~~----~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 189 KKIGGGASKDD---KYKNDAPVVVGTWQTVVKQP----KEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMFKFG 257 (282)
T ss_dssp EECSTTCSSTT---CCCTTCSEEEECHHHHTTSC----GGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCEEEE
T ss_pred EEEeCCCcchh---hhccCCcEEEEchHHHHhhH----HHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCeEEE
Confidence 88888876443 22357899999999875432 23467899999999999874 478888888878999999
Q ss_pred EeccCcHH
Q 003924 205 FSATLPSA 212 (786)
Q Consensus 205 ~SATl~~~ 212 (786)
+|||+++.
T Consensus 258 lSATp~~~ 265 (282)
T 1rif_A 258 LSGSLRDG 265 (282)
T ss_dssp ECSSCCTT
T ss_pred EeCCCCCc
Confidence 99999764
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.77 E-value=8.4e-18 Score=197.59 Aligned_cols=317 Identities=18% Similarity=0.217 Sum_probs=192.4
Q ss_pred CChHHHHHHHH----HHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 45 VPTPIQRKTMP----LILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 45 ~ptpiQ~~aip----~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.|+|.|++.+. .+..|+++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+..+....
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~----~~kvli~t~T~~l~~Qi~~el~~l~~~~ 78 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER----KLKVLYLVRTNSQEEQVIKELRSLSSTM 78 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH----TCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc----CCeEEEECCCHHHHHHHHHHHHHHhhcc
Confidence 68999999885 456789999999999999999999999988653 5689999999999999999999887766
Q ss_pred CCeEEEEEcCCChhH------------------HH---------------------------------------------
Q 003924 121 DLRISLLVGGDSMES------------------QF--------------------------------------------- 137 (786)
Q Consensus 121 ~l~v~~l~gg~~~~~------------------~~--------------------------------------------- 137 (786)
++++..+.|+.++-- ..
T Consensus 79 ~~~~~~l~gr~~lC~~~~~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~l~~~~~die~l~~~~ 158 (620)
T 4a15_A 79 KIRAIPMQGRVNMCILYRMVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRFLFDELPTAEEFYDYG 158 (620)
T ss_dssp CCCEEECCCHHHHCSSHHHHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHHHHHHCCCHHHHHHHH
T ss_pred CeEEEEEECCCcccccChhhhhcccchhhhHHHHHHHHHhccccCCCCCCCcccccCcccchhHHhccCCCCHHHHHHHh
Confidence 788877766432000 00
Q ss_pred -----------HHHcCCCCEEEECcHHHHHHHhhcc---CC-CCCceeeEEeCCccccccC-------------------
Q 003924 138 -----------EELAQNPDIIIATPGRLMHHLSEVE---DM-SLKSVEYVVFDEADCLFGM------------------- 183 (786)
Q Consensus 138 -----------~~l~~~~dIiV~Tpgrll~~l~~~~---~l-~l~~l~~vV~DEah~l~~~------------------- 183 (786)
+.....+||||+++..|++...... .+ ....-.+|||||||.|.+.
T Consensus 159 ~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~~~~ 238 (620)
T 4a15_A 159 ERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADR 238 (620)
T ss_dssp HHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHHHHH
T ss_pred hhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHHhhcceeCHHHHHHHHH
Confidence 1112357999999987766543211 01 1234469999999986420
Q ss_pred -------Ch----------HHH----HH-----------------------------------H-------HHh------
Q 003924 184 -------GF----------AEQ----LH-----------------------------------K-------ILG------ 194 (786)
Q Consensus 184 -------gf----------~~~----l~-----------------------------------~-------Il~------ 194 (786)
.+ ... +. . +..
T Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 318 (620)
T 4a15_A 239 EAQAYGDPELSQKIHVSDLIEMIRSALQSMVSERCGKGDVRIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEK 318 (620)
T ss_dssp HHHHTTCCEEETTEEHHHHHHHHHHHHHHHHHHHCSSSCEEECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHhhc
Confidence 00 000 00 0 000
Q ss_pred -------------------hc---c------------------------------cCCceEEEeccCcHHHHHHHHh-cC
Q 003924 195 -------------------QL---S------------------------------ENRQTLLFSATLPSALAEFAKA-GL 221 (786)
Q Consensus 195 -------------------~l---~------------------------------~~~q~ll~SATl~~~l~~~~~~-~l 221 (786)
.+ . ..+.+|++||||.+ +..+... ++
T Consensus 319 ~~~~~~~~~~~~~~~~fl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~l~~~~~~~~il~SaTL~p-~~~~~~~lGl 397 (620)
T 4a15_A 319 EKVGKVPFSYCSSVASRIIAFSDQDEEKYAAILSPEDGGYMQAACLDPSGILEVLKESKTIHMSGTLDP-FDFYSDITGF 397 (620)
T ss_dssp HHTTSCCCCHHHHHHHHHHHHHTSCTTTEEEEEECGGGCEEEEEECCTHHHHGGGGGSEEEEEESSCCS-HHHHHHHHCC
T ss_pred cccccccccHHHHHHHHHHHHhhcCCCCEEEEEEeCCCcEEEEEECCHHHHHHHHhCCeEEEEccCCCc-HHHHHHHhCC
Confidence 00 0 01245899999976 4444443 34
Q ss_pred CCCcceeeccccccCCCceeeeee--cc------hHHHHHHHHHHHHHhc-cCCCcEEEEEcchhhHHHHHHHHHHcCCC
Q 003924 222 RDPHLVRLDVDTKISPDLKLAFFT--LR------QEEKHAALLYMIREHI-SSDQQTLIFVSTKHHVEFLNVLFREEGLE 292 (786)
Q Consensus 222 ~~p~~i~~~~~~~~~~~l~~~~~~--v~------~~~k~~~Ll~lL~~~~-~~~~k~IVF~~t~~~ae~l~~~L~~~g~~ 292 (786)
. +.. +.........-...++. ++ ...-...+...|.+.+ ..++.++||+++....+.++..|. .+.
T Consensus 398 ~-~~~--~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~~ 472 (620)
T 4a15_A 398 E-IPF--KKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVS--FEH 472 (620)
T ss_dssp C-CCE--EECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCC--SCC
T ss_pred C-cee--eecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHH--hcc
Confidence 3 222 22222222111111111 11 1112233444443322 136779999999999999988776 222
Q ss_pred ceeecCCCCHHHHHHHHHHHhcCCcEEEEEec--ccccccCCCC--cceeEecCCCCC-------------------H--
Q 003924 293 PSVCYGDMDQDARKIHVSRFRARKTMFLIVTD--VAARGIDIPL--LDNVINWDFPPK-------------------P-- 347 (786)
Q Consensus 293 v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTd--v~arGlDIp~--v~~VI~~d~P~s-------------------~-- 347 (786)
.. ..-+++...+..+++.|+ +...||++|. ..++|||+|+ +.+||...+|.. .
T Consensus 473 ~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~ 550 (620)
T 4a15_A 473 MK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWE 550 (620)
T ss_dssp EE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHH
T ss_pred hh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCch
Confidence 22 334455667889999999 8889999985 8999999995 778998887731 1
Q ss_pred --------hHHHHHhhccccCCCccEEEEEEecc
Q 003924 348 --------KIFVHRVGRAARAGRTGTAFSFVTSE 373 (786)
Q Consensus 348 --------~~~vQRvGR~gR~G~~G~ai~lv~~~ 373 (786)
..+.|.+||+-|.-..--++++++..
T Consensus 551 ~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R 584 (620)
T 4a15_A 551 YSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKR 584 (620)
T ss_dssp HHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGG
T ss_pred HHhHHHHHHHHHHHhCccccCCCceEEEEEEccc
Confidence 11379999999975544455555544
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.77 E-value=4.4e-18 Score=176.54 Aligned_cols=138 Identities=19% Similarity=0.144 Sum_probs=111.2
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCe-
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR- 123 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~- 123 (786)
.|+|+|.++++.++.+.+++++++||+|||.+++.++... +.++||++|+++|+.|+.+.+..| ++.
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~liv~P~~~L~~q~~~~~~~~----~~~~ 160 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLGIF----GEEY 160 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS--------CSCEEEEESSHHHHHHHHHHHGGG----CGGG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHhC----CCCe
Confidence 7999999999999999999999999999999988776642 456999999999999999888774 577
Q ss_pred EEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceE
Q 003924 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTL 203 (786)
Q Consensus 124 v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~l 203 (786)
+..+.|+.. ...+|+|+||+.+....... ...+++|||||||++....+. .++..++ ..++|
T Consensus 161 v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~l~~~~~~----~i~~~~~-~~~~l 222 (237)
T 2fz4_A 161 VGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHHLPAESYV----QIAQMSI-APFRL 222 (237)
T ss_dssp EEEESSSCB---------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSCCCTTTHH----HHHHTCC-CSEEE
T ss_pred EEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCccCCChHHH----HHHHhcc-CCEEE
Confidence 777776653 35799999999987766531 245889999999999876654 3455554 67899
Q ss_pred EEeccCcHH
Q 003924 204 LFSATLPSA 212 (786)
Q Consensus 204 l~SATl~~~ 212 (786)
++||||+..
T Consensus 223 ~LSATp~r~ 231 (237)
T 2fz4_A 223 GLTATFERE 231 (237)
T ss_dssp EEEESCC--
T ss_pred EEecCCCCC
Confidence 999999753
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.71 E-value=1.9e-17 Score=175.13 Aligned_cols=129 Identities=18% Similarity=0.313 Sum_probs=103.7
Q ss_pred cchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc-CCCceeecCCCCHHHHHHHHHHHhcC-CcE-EEEE
Q 003924 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREE-GLEPSVCYGDMDQDARKIHVSRFRAR-KTM-FLIV 322 (786)
Q Consensus 246 v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~-g~~v~~lhg~l~q~~R~~~l~~F~~g-~~~-ILVa 322 (786)
+....|...|..+|.+....+.++||||++...++.+...|... |+.+..+||++++.+|..+++.|+++ .+. +|++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34567999999999887777899999999999999999999885 99999999999999999999999999 676 7889
Q ss_pred ecccccccCCCCcceeEecCCCCCHhHHHHHhhccccCCCccEE--EEEEeccc
Q 003924 323 TDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTA--FSFVTSED 374 (786)
Q Consensus 323 Tdv~arGlDIp~v~~VI~~d~P~s~~~~vQRvGR~gR~G~~G~a--i~lv~~~e 374 (786)
|+++++|||++.+++||+||+|++|..|.||+||++|.|+.+.+ |.|++.+.
T Consensus 172 t~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 172 VKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp CCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred hhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 99999999999999999999999999999999999999987654 66777653
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.83 E-value=8.9e-09 Score=120.75 Aligned_cols=163 Identities=17% Similarity=0.172 Sum_probs=99.2
Q ss_pred CCHHHHHHHHHCCCC--CChHHHHHHHHHHHcCCcEEEEcCCCChHH--HHHHHHHHHHHhhcCCCCCeEEEEEcCcHHH
Q 003924 30 LSPNVFRAIKRKGYK--VPTPIQRKTMPLILSGADVVAMARTGSGKT--AAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (786)
Q Consensus 30 Ls~~ll~~l~~~g~~--~ptpiQ~~aip~il~g~dvvl~a~TGSGKT--~afllpile~L~~~~~~~g~r~LIL~PtreL 105 (786)
+++..+......-|. ..++.|+.+++.++.++.+++.|++||||| ++++++++..+.. ..+.++++++||..+
T Consensus 132 ~~~~~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---~~~~~vll~APTg~A 208 (608)
T 1w36_D 132 VDEALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD---GERCRIRLAAPTGKA 208 (608)
T ss_dssp CCHHHHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---SCCCCEEEEBSSHHH
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---cCCCeEEEEeCChhH
Confidence 454444443333232 237899999999999999999999999999 6677777766532 235689999999999
Q ss_pred HHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCCh
Q 003924 106 ALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF 185 (786)
Q Consensus 106 a~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf 185 (786)
|.++.+.+..++...++..... .+.. .....+ ..++-.+|+... +... ......+++||||||+. ++
T Consensus 209 A~~L~e~~~~~~~~l~l~~~~~-~~~~--~~~~Ti---h~ll~~~~~~~~--~~~~-~~~~l~~d~lIIDEAsm-l~--- 275 (608)
T 1w36_D 209 AARLTESLGKALRQLPLTDEQK-KRIP--EDASTL---HRLLGAQPGSQR--LRHH-AGNPLHLDVLVVDEASM-ID--- 275 (608)
T ss_dssp HHHHHHHHTHHHHHSSCCSCCC-CSCS--CCCBTT---TSCC-------------C-TTSCCSCSEEEECSGGG-CB---
T ss_pred HHHHHHHHHHHHhcCCCCHHHH-hccc--hhhhhh---HhhhccCCCchH--HHhc-cCCCCCCCEEEEechhh-CC---
Confidence 9999987776554433321110 0000 000000 112222332210 1111 11223688999999994 43
Q ss_pred HHHHHHHHhhcccCCceEEEecc
Q 003924 186 AEQLHKILGQLSENRQTLLFSAT 208 (786)
Q Consensus 186 ~~~l~~Il~~l~~~~q~ll~SAT 208 (786)
...+..++..++..+|+|++.=.
T Consensus 276 ~~~~~~Ll~~l~~~~~liLvGD~ 298 (608)
T 1w36_D 276 LPMMSRLIDALPDHARVIFLGDR 298 (608)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHHhCCCCCEEEEEcch
Confidence 46778889999888898887654
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.23 E-value=2.2e-05 Score=92.60 Aligned_cols=67 Identities=18% Similarity=0.247 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHHcCCc-EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003924 45 VPTPIQRKTMPLILSGAD-VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~d-vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l 116 (786)
.+.+-|.+|+..++..++ .+++||+|||||.+.+-.+.+.+ . .+.++|+++||..-+.++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~-~----~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAV-K----QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHH-H----TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHH-h----CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 578999999999998765 78999999999987554444433 3 2668999999999999988877654
No 96
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.12 E-value=0.00017 Score=86.91 Aligned_cols=70 Identities=16% Similarity=0.166 Sum_probs=55.6
Q ss_pred CCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003924 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (786)
Q Consensus 43 ~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l 116 (786)
+..+++.|..|+..++.+.-+++.||+|||||.+..-. +..+... .+.++|+++||...+.++.+.+..+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~-i~~l~~~---~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATI-VYHLSKI---HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHH-HHHHHHH---HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHH-HHHHHhC---CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 44678999999999988777899999999999875433 3333321 2567999999999999999888765
No 97
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.07 E-value=0.00026 Score=85.18 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=55.7
Q ss_pred CCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003924 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (786)
Q Consensus 43 ~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l 116 (786)
...+++.|..|+..++.+.-+++.||+|+|||.+.. .++..+... .+.++|+++||...+.++.+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~---~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ---GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT---CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc---CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 346799999999999988889999999999998744 344444432 3568999999999999988877654
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.04 E-value=1.8e-05 Score=89.56 Aligned_cols=140 Identities=13% Similarity=0.112 Sum_probs=81.1
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHHcC----C-cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHH
Q 003924 35 FRAIKRKGYKVPTPIQRKTMPLILSG----A-DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQT 109 (786)
Q Consensus 35 l~~l~~~g~~~ptpiQ~~aip~il~g----~-dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~ 109 (786)
.....-+.|..+++-|+.++..++.. . .+++.|+.|||||.+. ..++..|... ....+++++||...|..+
T Consensus 15 ~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~---~~~~il~~a~T~~Aa~~l 90 (459)
T 3upu_A 15 VPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALIST---GETGIILAAPTHAAKKIL 90 (459)
T ss_dssp ------CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHT---TCCCEEEEESSHHHHHHH
T ss_pred ccccCCCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhc---CCceEEEecCcHHHHHHH
Confidence 33445578999999999999977643 3 8999999999999753 4445555443 123699999999887766
Q ss_pred HHHHHHHccCCCCeEEEEEcCCChhHHHHHH---cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChH
Q 003924 110 LKFTKELGRYTDLRISLLVGGDSMESQFEEL---AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFA 186 (786)
Q Consensus 110 ~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l---~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~ 186 (786)
.+.+ ++.+..++ ..+... ......+.. .....+..+++||+||++.+. .
T Consensus 91 ~~~~-------~~~~~T~h------~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~iiiDE~~~~~----~ 142 (459)
T 3upu_A 91 SKLS-------GKEASTIH------SILKINPVTYEENVLFEQ-----------KEVPDLAKCRVLICDEVSMYD----R 142 (459)
T ss_dssp HHHH-------SSCEEEHH------HHHTEEEEECSSCEEEEE-----------CSCCCCSSCSEEEESCGGGCC----H
T ss_pred Hhhh-------ccchhhHH------HHhccCcccccccchhcc-----------cccccccCCCEEEEECchhCC----H
Confidence 5543 12211111 000000 000000000 012345678899999999754 3
Q ss_pred HHHHHHHhhcccCCceEEEe
Q 003924 187 EQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 187 ~~l~~Il~~l~~~~q~ll~S 206 (786)
..+..++..++...+++++.
T Consensus 143 ~~~~~l~~~~~~~~~~~~vG 162 (459)
T 3upu_A 143 KLFKILLSTIPPWCTIIGIG 162 (459)
T ss_dssp HHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHHhccCCCEEEEEC
Confidence 45666666666555555544
No 99
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.01 E-value=1.5e-05 Score=92.50 Aligned_cols=122 Identities=16% Similarity=0.147 Sum_probs=81.7
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeE
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRI 124 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v 124 (786)
.+++.|+.++..++.+..+++.|++|||||.+. ..++..+.. .+.++++++||...+..+.+.+. ...
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~----~g~~Vl~~ApT~~Aa~~L~e~~~-------~~a 256 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES----LGLEVGLCAPTGKAARRLGEVTG-------RTA 256 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH----TTCCEEEEESSHHHHHHHHHHHT-------SCE
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh----cCCeEEEecCcHHHHHHhHhhhc-------ccH
Confidence 689999999999999999999999999999763 334444443 36779999999998887665431 111
Q ss_pred EEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHh---hccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCc
Q 003924 125 SLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLS---EVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQ 201 (786)
Q Consensus 125 ~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~---~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q 201 (786)
.|..+++.... .........+++||||||+.+. ...+..++..++...+
T Consensus 257 ------------------------~Tih~ll~~~~~~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~ 308 (574)
T 3e1s_A 257 ------------------------STVHRLLGYGPQGFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGAR 308 (574)
T ss_dssp ------------------------EEHHHHTTEETTEESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCE
T ss_pred ------------------------HHHHHHHcCCcchhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCE
Confidence 11111110000 0011123357899999999764 3577778888887777
Q ss_pred eEEEe
Q 003924 202 TLLFS 206 (786)
Q Consensus 202 ~ll~S 206 (786)
++++.
T Consensus 309 lilvG 313 (574)
T 3e1s_A 309 VLLVG 313 (574)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 77654
No 100
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=98.00 E-value=0.00038 Score=81.76 Aligned_cols=71 Identities=15% Similarity=0.144 Sum_probs=54.8
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHc
Q 003924 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELG 117 (786)
Q Consensus 44 ~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~ 117 (786)
..+++-|++++. .....+++.|+.|||||.+.+--+...+.... ....++|+|++|+..+.++.+.+..+.
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC-CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC-CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 468999999996 33567999999999999886655554444321 234579999999999999999887763
No 101
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.94 E-value=5.2e-05 Score=89.05 Aligned_cols=70 Identities=16% Similarity=0.132 Sum_probs=55.8
Q ss_pred CCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003924 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (786)
Q Consensus 43 ~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l 116 (786)
+..+++.|..|+..++.+.-+++.||+|||||.+..- ++..+... .+.++|+++||...+.++.+.+...
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~---~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ---GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS---SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc---CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4568999999999999888899999999999987543 33444332 3568999999999999988877654
No 102
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=97.50 E-value=0.00048 Score=73.43 Aligned_cols=127 Identities=12% Similarity=0.062 Sum_probs=95.1
Q ss_pred cchHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc
Q 003924 246 LRQEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (786)
Q Consensus 246 v~~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv 325 (786)
+....|+..|-.+|......+.++|||+......+.+..+|...++....+.|......++ -.+..+.|.+.|..
T Consensus 105 ~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsa 179 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSE 179 (328)
T ss_dssp HHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESS
T ss_pred HHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECC
Confidence 3456788888888888877889999999999999999999999999999999985543222 12455666666766
Q ss_pred cccccC-----CCCcceeEecCCCCCHhH-HHHHhhccccCC----CccEEEEEEecccHHH
Q 003924 326 AARGID-----IPLLDNVINWDFPPKPKI-FVHRVGRAARAG----RTGTAFSFVTSEDMAY 377 (786)
Q Consensus 326 ~arGlD-----Ip~v~~VI~~d~P~s~~~-~vQRvGR~gR~G----~~G~ai~lv~~~e~~~ 377 (786)
..-|+| +...+.||.||.-+++.. .+|.+-|+.|.| +.-.+|-|++..-+..
T Consensus 180 g~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 180 GINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp CCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred CCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 666776 567999999999999988 499999998873 3567788888876543
No 103
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.16 E-value=0.017 Score=68.27 Aligned_cols=81 Identities=16% Similarity=0.085 Sum_probs=58.9
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccC---CC
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRY---TD 121 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~---~~ 121 (786)
.++|-|++++.. .+..+++.|..|||||.+.+--+...+.... ....++|+|+.|+..|.++.+.+..+... .+
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~-~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~~~~ 78 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG-YQARHIAAVTFTNKAAREMKERVGQTLGRKEARG 78 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC-CCGGGEEEEESSHHHHHHHHHHHHHHSCTTTTTT
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHcCcccccC
Confidence 578999999974 3668999999999999886655555544321 12457999999999999999888775432 24
Q ss_pred CeEEEEE
Q 003924 122 LRISLLV 128 (786)
Q Consensus 122 l~v~~l~ 128 (786)
+.+..++
T Consensus 79 ~~v~Tfh 85 (673)
T 1uaa_A 79 LMISTFH 85 (673)
T ss_dssp SEEEEHH
T ss_pred CEEEeHH
Confidence 5555543
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.91 E-value=0.0072 Score=66.32 Aligned_cols=71 Identities=17% Similarity=0.089 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHcc
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGR 118 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~ 118 (786)
.|+|+|+..+..+...+-++++.+-+.|||.+....++..+.. ..+..+++++|+...|..+++.+..+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~---~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF---NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS---SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh---CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 7899999999877656778999999999998776666554433 2467899999999999888877766543
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.77 E-value=0.011 Score=68.67 Aligned_cols=73 Identities=16% Similarity=0.083 Sum_probs=57.9
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCC
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYT 120 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~ 120 (786)
.|+|+|+..+..+...+.+++..+-|+|||.+....++..+... .+..+++++|+...|..+.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN---KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS---SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC---CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 58999999998775667899999999999987665555444432 36689999999999999888777765443
No 106
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.69 E-value=0.0087 Score=57.92 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHH---------cCCcEEEEcCCCChHHHHHH
Q 003924 47 TPIQRKTMPLIL---------SGADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 47 tpiQ~~aip~il---------~g~dvvl~a~TGSGKT~afl 78 (786)
.+.|..++..+. .|+.+++.||+|+|||..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~ 56 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAV 56 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHH
Confidence 455666665543 36789999999999997543
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.49 E-value=0.015 Score=57.08 Aligned_cols=40 Identities=25% Similarity=0.245 Sum_probs=27.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptr 103 (786)
.|+-+++.|++|+|||...+--+. .+.. .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~-~~~~----~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE-IYKL----GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH-HHHH----TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH-HHHH----CCCeEEEEeecc
Confidence 456688999999999987653333 3322 256789998874
No 108
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.38 E-value=0.0061 Score=61.79 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=52.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE 138 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~ 138 (786)
.|.-+++.|++|+|||.+.+-.+. ++.. .+.+++|+.|...- . -...+....++.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~-r~~~----~g~kVli~~~~~d~--r---~~~~i~srlG~~--------------- 65 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLH-RLEY----ADVKYLVFKPKIDT--R---SIRNIQSRTGTS--------------- 65 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHH-HHHH----TTCCEEEEEECCCG--G---GCSSCCCCCCCS---------------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHH-HHHh----cCCEEEEEEeccCc--h---HHHHHHHhcCCC---------------
Confidence 355688899999999987554433 4333 25678888775420 0 000111111211
Q ss_pred HHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccc
Q 003924 139 ELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 139 ~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
-..+.+.+...++..+.. .+.-..+++|||||++.+.
T Consensus 66 ----~~~~~~~~~~~i~~~i~~--~~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 66 ----LPSVEVESAPEILNYIMS--NSFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp ----SCCEEESSTHHHHHHHHS--TTSCTTCCEEEECSGGGSC
T ss_pred ----ccccccCCHHHHHHHHHH--HhhCCCCCEEEEecCccCc
Confidence 122345666667766654 2333457899999999744
No 109
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.30 E-value=0.0044 Score=68.99 Aligned_cols=107 Identities=17% Similarity=0.140 Sum_probs=63.5
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHc
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~ 141 (786)
-.++.|+.|||||..+. .+... ...+|++||++++..+.+.+...+ . .
T Consensus 163 v~~I~G~aGsGKTt~I~-----~~~~~-----~~~lVlTpT~~aa~~l~~kl~~~~----~------------------~ 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEIL-----SRVNF-----EEDLILVPGRQAAEMIRRRANASG----I------------------I 210 (446)
T ss_dssp EEEEEECTTSCHHHHHH-----HHCCT-----TTCEEEESCHHHHHHHHHHHTTTS----C------------------C
T ss_pred EEEEEcCCCCCHHHHHH-----HHhcc-----CCeEEEeCCHHHHHHHHHHhhhcC----c------------------c
Confidence 37799999999998654 22111 246999999999988777664321 0 0
Q ss_pred CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEecc
Q 003924 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (786)
Q Consensus 142 ~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SAT 208 (786)
....+-|.|.++++-. . .....-..++||||||-. .+.+ .+..++..++. .+++++.=+
T Consensus 211 ~~~~~~V~T~dsfL~~--~-~~~~~~~~d~liiDE~sm-~~~~---~l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 211 VATKDNVRTVDSFLMN--Y-GKGARCQFKRLFIDEGLM-LHTG---CVNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp CCCTTTEEEHHHHHHT--T-TSSCCCCCSEEEEETGGG-SCHH---HHHHHHHHTTC-SEEEEEECT
T ss_pred ccccceEEEeHHhhcC--C-CCCCCCcCCEEEEeCccc-CCHH---HHHHHHHhCCC-CEEEEecCc
Confidence 1122347787776421 1 122223478999999974 4433 33344444443 556655544
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.22 E-value=0.012 Score=58.07 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptr 103 (786)
|+-.++.|++|||||.+.+- ++.++.. .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~-~a~r~~~----~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIR-RIRRAKI----AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHH-HHHHHHH----TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHH-HHHHHHH----CCCEEEEEEecc
Confidence 45578899999999987553 3334333 367899999873
No 111
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.03 E-value=0.0037 Score=59.20 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=25.3
Q ss_pred ceeeEEeCCccccccCChHHHHHHHHhhcccC-CceEEEeccC
Q 003924 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSEN-RQTLLFSATL 209 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~-~q~ll~SATl 209 (786)
..++|||||.+.+.... ...+..++..+... ..++++|+..
T Consensus 83 ~~~lLilDE~~~~~~~~-~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-QALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GCSEEEEESTTCCCSHH-HHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCCEEEEeCccccChHH-HHHHHHHHHHHHHcCCcEEEEECCC
Confidence 46799999999865433 55666666655433 4424455553
No 112
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.48 E-value=0.04 Score=61.33 Aligned_cols=121 Identities=14% Similarity=0.163 Sum_probs=66.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~--PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~ 139 (786)
-+++.|++|+|||.+....+. .+.. .|.+++++. +.|.-+. +.+..++...++.+.....+..
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~-~l~~----~G~kVllv~~D~~r~~a~---eqL~~~~~~~gv~~~~~~~~~d------- 163 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAY-FYKK----RGYKVGLVAADVYRPAAY---DQLLQLGNQIGVQVYGEPNNQN------- 163 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHH-HHHH----TTCCEEEEEECCSCHHHH---HHHHHHHHTTTCCEECCTTCSC-------
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH----cCCeEEEEecCccchhHH---HHHHHHHHhcCCceeeccccCC-------
Confidence 377899999999986543322 3332 255566555 3343322 2344444444554332222111
Q ss_pred HcCCCCEEEECcHHHH-HHHhhccCCCCCceeeEEeCCccccc---cCChHHHHHHHHhhcccCCceEEEeccCcH
Q 003924 140 LAQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLF---GMGFAEQLHKILGQLSENRQTLLFSATLPS 211 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll-~~l~~~~~l~l~~l~~vV~DEah~l~---~~gf~~~l~~Il~~l~~~~q~ll~SATl~~ 211 (786)
|..+. ..+. .+....+++||+|++-++. +..+...+..++..+.+..-++.++|+...
T Consensus 164 -----------p~~i~~~al~---~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq 225 (433)
T 3kl4_A 164 -----------PIEIAKKGVD---IFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ 225 (433)
T ss_dssp -----------HHHHHHHHHH---HTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG
T ss_pred -----------HHHHHHHHHH---HHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch
Confidence 22221 1122 2334578899999998754 344667777777776666666777777543
No 113
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.40 E-value=0.017 Score=58.03 Aligned_cols=39 Identities=18% Similarity=0.184 Sum_probs=27.2
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptr 103 (786)
|+-.++.|++|||||.+.+--+... .. .+.+++|+.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~-~~----~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRT-QF----AKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH-HH----TTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH-HH----CCCEEEEEEecc
Confidence 3446789999999998765444433 33 367899999875
No 114
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.16 Score=54.05 Aligned_cols=27 Identities=11% Similarity=-0.037 Sum_probs=19.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhh
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQ 87 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~ 87 (786)
+..+++.||+|+|||++.- .++..|..
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L~~ 71 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDELIT 71 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH
Confidence 3579999999999998643 44455543
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.22 E-value=0.068 Score=56.78 Aligned_cols=17 Identities=24% Similarity=0.430 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHH
Q 003924 61 ADVVAMARTGSGKTAAF 77 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~af 77 (786)
..+++.||+|+|||...
T Consensus 38 ~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp SSEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999754
No 116
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.94 E-value=0.084 Score=54.51 Aligned_cols=18 Identities=33% Similarity=0.244 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
..+++.||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 459999999999998644
No 117
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.57 E-value=0.14 Score=55.19 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=14.7
Q ss_pred CcEEEEcCCCChHHHHH
Q 003924 61 ADVVAMARTGSGKTAAF 77 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~af 77 (786)
..+++.||+|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 45999999999999764
No 118
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.52 E-value=0.13 Score=57.40 Aligned_cols=43 Identities=23% Similarity=0.512 Sum_probs=25.7
Q ss_pred ceeeEEeCCccccccC-ChHHHHHHHHhhccc-CCceEEEeccCc
Q 003924 168 SVEYVVFDEADCLFGM-GFAEQLHKILGQLSE-NRQTLLFSATLP 210 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~-gf~~~l~~Il~~l~~-~~q~ll~SATl~ 210 (786)
..++|||||+|.+... .....+..++..+.. +.++|+.|..+|
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~ 238 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCG
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCH
Confidence 4569999999998763 234455555554433 455555444333
No 119
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.41 E-value=0.059 Score=54.63 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=28.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptr 103 (786)
.|+-.++.|++|||||.+.+--+... .. .|.+++|+-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~-~~----~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRF-QI----AQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH-HT----TTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH-HH----CCCeEEEEeecC
Confidence 35668889999999998766444433 22 367899998864
No 120
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.40 E-value=0.082 Score=52.73 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCChHHHHH
Q 003924 60 GADVVAMARTGSGKTAAF 77 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~af 77 (786)
+..+++.||+|+|||...
T Consensus 52 ~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999754
No 121
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.39 E-value=0.067 Score=63.71 Aligned_cols=70 Identities=17% Similarity=0.140 Sum_probs=53.8
Q ss_pred CCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHH
Q 003924 44 KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKEL 116 (786)
Q Consensus 44 ~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l 116 (786)
..++|-|++++.. ....+++.|..|||||.+.+--+...+.... ....++|+|+.|+..|.++.+.+..+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-VAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC-CCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999864 3568999999999999886655554444321 23457999999999999998887765
No 122
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.37 E-value=0.12 Score=47.96 Aligned_cols=40 Identities=13% Similarity=0.017 Sum_probs=24.2
Q ss_pred eeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccCc
Q 003924 170 EYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (786)
Q Consensus 170 ~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl~ 210 (786)
++|+|||+|.+.. .....+..++...+...++|+.|...+
T Consensus 78 g~l~ldei~~l~~-~~q~~Ll~~l~~~~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 78 GTLVLSHPEHLTR-EQQYHLVQLQSQEHRPFRLIGIGDTSL 117 (145)
T ss_dssp SCEEEECGGGSCH-HHHHHHHHHHHSSSCSSCEEEEESSCH
T ss_pred cEEEEcChHHCCH-HHHHHHHHHHhhcCCCEEEEEECCcCH
Confidence 4799999998764 234455555555555556555554433
No 123
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.32 E-value=0.16 Score=48.32 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afl 78 (786)
...+++.|++|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3579999999999997543
No 124
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.24 E-value=0.065 Score=59.72 Aligned_cols=120 Identities=15% Similarity=0.155 Sum_probs=61.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc--CcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~--PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~ 139 (786)
-+++.|++|+|||.+..-.+ ..+.. .|.+++++. |.|.-+. +.+..++...++.+.....+..
T Consensus 102 vIlivG~~G~GKTTt~~kLA-~~l~~----~G~kVllv~~D~~R~aa~---eqL~~~~~~~gvpv~~~~~~~d------- 166 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLA-RYFQK----RGYKVGVVCSDTWRPGAY---HQLRQLLDRYHIEVFGNPQEKD------- 166 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHH-HHHHT----TTCCEEEEECCCSSTHHH---HHHHHHHGGGTCEEECCTTCCC-------
T ss_pred EEEEECcCCCCHHHHHHHHH-HHHHH----CCCeEEEEeCCCcchhHH---HHHHHHHHhcCCcEEecCCCCC-------
Confidence 47889999999998654322 23332 355666655 4444332 3444555555555433222211
Q ss_pred HcCCCCEEEECcHHHH-HHHhhccCCCCCceeeEEeCCcccccc-CChHHHHHHHHhhcccCCceEEEeccCc
Q 003924 140 LAQNPDIIIATPGRLM-HHLSEVEDMSLKSVEYVVFDEADCLFG-MGFAEQLHKILGQLSENRQTLLFSATLP 210 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll-~~l~~~~~l~l~~l~~vV~DEah~l~~-~gf~~~l~~Il~~l~~~~q~ll~SATl~ 210 (786)
|..+. +.+.. +....+++||+|.+=++.. ......+..+.....+..-++.++||..
T Consensus 167 -----------p~~i~~~al~~---a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~g 225 (443)
T 3dm5_A 167 -----------AIKLAKEGVDY---FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIG 225 (443)
T ss_dssp -----------HHHHHHHHHHH---HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred -----------HHHHHHHHHHH---HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCc
Confidence 22121 11111 1123477899999865432 1233445555555544555666777654
No 125
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.24 E-value=0.24 Score=48.43 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
..+++.|++|+|||....
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999997543
No 126
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.22 E-value=0.15 Score=54.75 Aligned_cols=29 Identities=24% Similarity=0.149 Sum_probs=19.6
Q ss_pred ceeeEEeCCccccccCC-hHHHHHHHHhhc
Q 003924 168 SVEYVVFDEADCLFGMG-FAEQLHKILGQL 196 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~g-f~~~l~~Il~~l 196 (786)
...+|||||+|.+.... ....+..++...
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 159 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRIN 159 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGG
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhch
Confidence 35689999999987542 345555555544
No 127
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.09 E-value=0.061 Score=67.93 Aligned_cols=69 Identities=26% Similarity=0.297 Sum_probs=55.3
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcC-CCCCeEEEEEcCcHHHHHHHHHHHHH
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTRDLALQTLKFTKE 115 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~-~~~g~r~LIL~PtreLa~Q~~~~l~~ 115 (786)
.+|+-|.++|.. .+.+++|.|..|||||.+.+--++..+.... .....++|+|++|+..|..+.+.+..
T Consensus 10 ~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 689999999974 3789999999999999987766666665432 12345799999999999999887765
No 128
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.06 E-value=0.15 Score=48.52 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChHHHHH
Q 003924 61 ADVVAMARTGSGKTAAF 77 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~af 77 (786)
..+++.|++|+|||...
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 56999999999999754
No 129
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.96 E-value=0.046 Score=57.41 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
..+++.||+|+|||...-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999997643
No 130
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.92 E-value=0.094 Score=55.56 Aligned_cols=41 Identities=17% Similarity=0.116 Sum_probs=26.9
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEec
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SA 207 (786)
....+|||||+|.+........+..++...+...++|+.|.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 36789999999998622344556666666555666665443
No 131
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.88 E-value=0.024 Score=58.99 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=32.7
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHH-HHHHHHH--HcCCcEEEEcCCCChHHHHH
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQ-RKTMPLI--LSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ-~~aip~i--l~g~dvvl~a~TGSGKT~af 77 (786)
..-.|+++.-....++.|...=. .|.+ .+.+..+ .....+++.||+|+|||...
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE---LPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34578898877777777764210 1111 1111111 23467999999999999754
No 132
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.86 E-value=0.45 Score=46.28 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=25.0
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEec
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SA 207 (786)
....+|||||+|.+... ....+..++...+....+|+.|.
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEeC
Confidence 45679999999997642 34455555555554555555443
No 133
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.84 E-value=0.11 Score=55.99 Aligned_cols=16 Identities=31% Similarity=0.621 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 6999999999999854
No 134
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=93.73 E-value=0.13 Score=61.56 Aligned_cols=80 Identities=16% Similarity=0.044 Sum_probs=66.3
Q ss_pred ccCCCcEEEEEcchhhHHHHHHHHHH----cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc-cccccCCCCcce
Q 003924 263 ISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-AARGIDIPLLDN 337 (786)
Q Consensus 263 ~~~~~k~IVF~~t~~~ae~l~~~L~~----~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv-~arGlDIp~v~~ 337 (786)
+..+.+++|.++|+.-+..++..+.. .++.+..+||+++..++..++..+.+|..+|+|+|.. +...+++.++.+
T Consensus 414 l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~l 493 (780)
T 1gm5_A 414 YEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGL 493 (780)
T ss_dssp HHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCE
T ss_pred HHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCce
Confidence 34578999999999888877766654 3789999999999999999999999999999999964 456678888888
Q ss_pred eEecC
Q 003924 338 VINWD 342 (786)
Q Consensus 338 VI~~d 342 (786)
||.-.
T Consensus 494 VVIDE 498 (780)
T 1gm5_A 494 VIIDE 498 (780)
T ss_dssp EEEES
T ss_pred EEecc
Confidence 88433
No 135
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.69 E-value=0.12 Score=55.35 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=24.1
Q ss_pred ChHHHHHHHHHHH----cCC---cEEEEcCCCChHHHHHH
Q 003924 46 PTPIQRKTMPLIL----SGA---DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 46 ptpiQ~~aip~il----~g~---dvvl~a~TGSGKT~afl 78 (786)
+.|+|..++..+. .|+ -+++.||.|+|||.+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 3577777776554 343 38999999999997654
No 136
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.64 E-value=0.19 Score=53.32 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=16.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afl 78 (786)
+..+++.||+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999997544
No 137
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.61 E-value=0.074 Score=62.07 Aligned_cols=112 Identities=23% Similarity=0.374 Sum_probs=72.9
Q ss_pred CChHHHHHHHHHHHc--CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCC
Q 003924 45 VPTPIQRKTMPLILS--GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDL 122 (786)
Q Consensus 45 ~ptpiQ~~aip~il~--g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l 122 (786)
.+|+-|.+++..++. ...+++.|+-|.|||++.-+.+ ..+.. .++|.+|+.+=+..+.+....
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~~~-------~~~vtAP~~~a~~~l~~~~~~------- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRIAG-------RAIVTAPAKASTDVLAQFAGE------- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHSSS-------CEEEECSSCCSCHHHHHHHGG-------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHHHh-------CcEEECCCHHHHHHHHHHhhC-------
Confidence 689999999998886 3358999999999996544333 33321 369999998765544333211
Q ss_pred eEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhcccCCce
Q 003924 123 RISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQT 202 (786)
Q Consensus 123 ~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ 202 (786)
.|-+..|+.+.. .+...++||||||=.+. ...+..++.. ...
T Consensus 240 ----------------------~i~~~~Pd~~~~--------~~~~~dlliVDEAAaIp----~pll~~ll~~----~~~ 281 (671)
T 2zpa_A 240 ----------------------KFRFIAPDALLA--------SDEQADWLVVDEAAAIP----APLLHQLVSR----FPR 281 (671)
T ss_dssp ----------------------GCCBCCHHHHHH--------SCCCCSEEEEETGGGSC----HHHHHHHHTT----SSE
T ss_pred ----------------------CeEEeCchhhhh--------CcccCCEEEEEchhcCC----HHHHHHHHhh----CCe
Confidence 133446655431 12357899999997653 3555566543 335
Q ss_pred EEEeccC
Q 003924 203 LLFSATL 209 (786)
Q Consensus 203 ll~SATl 209 (786)
++||.|.
T Consensus 282 v~~~tTv 288 (671)
T 2zpa_A 282 TLLTTTV 288 (671)
T ss_dssp EEEEEEB
T ss_pred EEEEecC
Confidence 7888887
No 138
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.55 E-value=0.057 Score=53.30 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=27.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
.|+-.++.|++|||||.-.+-.+- .... .+.+++|+.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~-n~~~----~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVR-RFQI----AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH-HHHH----TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHH-HHHH----cCCeEEEEccc
Confidence 356688999999999965443333 3322 25679999886
No 139
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.46 E-value=0.25 Score=52.44 Aligned_cols=52 Identities=15% Similarity=0.239 Sum_probs=32.2
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH-----cCCcEEEEcCCCChHHHHHH
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL-----SGADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il-----~g~dvvl~a~TGSGKT~afl 78 (786)
..-.|++++-...+.+.|...=. .|. ..|.+. ..+.+++.||+|+|||...-
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHHHH
Confidence 34578998877778877764310 111 111111 12469999999999997543
No 140
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.35 E-value=0.096 Score=52.50 Aligned_cols=98 Identities=18% Similarity=0.190 Sum_probs=51.9
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE 139 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~ 139 (786)
|.-.++.|++|||||...+-- +.+... .+.+++|+.|...-- .-...+....++..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~-~~r~~~----~g~kvli~kp~~D~R----~~~~~I~Sr~G~~~--------------- 83 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRR-LRRGIY----AKQKVVVFKPAIDDR----YHKEKVVSHNGNAI--------------- 83 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHH-HHHHHH----TTCCEEEEEEC---------------CBTTBCC---------------
T ss_pred ceEEEEECCCCCCHHHHHHHH-HHHHHH----cCCceEEEEeccCCc----chhhhHHHhcCCce---------------
Confidence 455789999999999765443 344433 256789999865311 00111222222211
Q ss_pred HcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHH
Q 003924 140 LAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKIL 193 (786)
Q Consensus 140 l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il 193 (786)
+.+.|..+..++..+ ...+++|+||||+-+.+ ....++..+.
T Consensus 84 ----~a~~v~~~~di~~~i-------~~~~dvV~IDEaQFf~~-~~v~~l~~la 125 (219)
T 3e2i_A 84 ----EAINISKASEIMTHD-------LTNVDVIGIDEVQFFDD-EIVSIVEKLS 125 (219)
T ss_dssp ----EEEEESSGGGGGGSC-------CTTCSEEEECCGGGSCT-HHHHHHHHHH
T ss_pred ----eeEEeCCHHHHHHHH-------hcCCCEEEEechhcCCH-HHHHHHHHHH
Confidence 223444443332211 24678999999997543 3555555554
No 141
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.35 E-value=0.66 Score=45.69 Aligned_cols=131 Identities=12% Similarity=0.207 Sum_probs=74.8
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc--C----cHHHHHHHHHHHHHHccCCCCeEEEEEcCCC--
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--P----TRDLALQTLKFTKELGRYTDLRISLLVGGDS-- 132 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~--P----treLa~Q~~~~l~~l~~~~~l~v~~l~gg~~-- 132 (786)
..+++...+|.|||.+++-.++..+.. |.+++|+- + +-|. +.+..+ ++.+...--|-.
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~-----G~rV~~vQF~Kg~~~~gE~-----~~l~~L----~v~~~~~g~gf~~~ 94 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH-----GKNVGVVQFIKGTWPNGER-----NLLEPH----GVEFQVMATGFTWE 94 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT-----TCCEEEEESSCCSSCCHHH-----HHHGGG----TCEEEECCTTCCCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC-----CCeEEEEEeeCCCCCccHH-----HHHHhC----CcEEEEcccccccC
Confidence 468999999999999888777766543 67788883 2 2111 122223 122221111110
Q ss_pred -h--hHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCCh--HHHHHHHHhhcccCCceEEEec
Q 003924 133 -M--ESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGF--AEQLHKILGQLSENRQTLLFSA 207 (786)
Q Consensus 133 -~--~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf--~~~l~~Il~~l~~~~q~ll~SA 207 (786)
. +...... ...+..+.+ .+.-..+++||+||+-.....++ .+.+..++..-|...-+|+.+-
T Consensus 95 ~~~~~~~~~~a-----------~~~l~~a~~--~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr 161 (196)
T 1g5t_A 95 TQNREADTAAC-----------MAVWQHGKR--MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGR 161 (196)
T ss_dssp GGGHHHHHHHH-----------HHHHHHHHH--HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECS
T ss_pred CCCcHHHHHHH-----------HHHHHHHHH--HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECC
Confidence 0 0000000 112222222 23336789999999976544442 4567777777777777888777
Q ss_pred cCcHHHHHHHH
Q 003924 208 TLPSALAEFAK 218 (786)
Q Consensus 208 Tl~~~l~~~~~ 218 (786)
-.|+.+.+.+.
T Consensus 162 ~ap~~l~e~AD 172 (196)
T 1g5t_A 162 GCHRDILDLAD 172 (196)
T ss_dssp SCCHHHHHHCS
T ss_pred CCcHHHHHhCc
Confidence 78888877764
No 142
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=93.30 E-value=0.4 Score=51.00 Aligned_cols=51 Identities=16% Similarity=0.217 Sum_probs=31.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHc-----CCcEEEEcCCCChHHHHHH
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILS-----GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~-----g~dvvl~a~TGSGKT~afl 78 (786)
.-+|++++-...+.+.|...= -.|.+ .|.+.. .+.+++.||+|+|||...-
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v---~~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAV---ILPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH---HHHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHH---HHHHh---CHHHHhCCCCCCceEEEECCCCccHHHHHH
Confidence 457889887777777775320 00110 011211 2579999999999997543
No 143
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.23 E-value=0.034 Score=61.89 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=34.6
Q ss_pred CCCCccCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHH
Q 003924 21 KSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~---g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~af 77 (786)
..-+|+++|--....+.|... .+..|--++...++ ..+.+++.||+|+|||+.+
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHHH
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHHH
Confidence 455899999888888887643 11122222221111 2367999999999999853
No 144
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.94 E-value=0.24 Score=54.06 Aligned_cols=19 Identities=21% Similarity=0.303 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afl 78 (786)
.+.+++.||+|+|||...-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3679999999999997543
No 145
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.88 E-value=0.23 Score=55.41 Aligned_cols=38 Identities=29% Similarity=0.152 Sum_probs=25.1
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
.-+++.|++|+|||...+-.+...... .+..++|++..
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~----~g~~vl~~slE 238 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALK----EGVGVGIYSLE 238 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT----TCCCEEEEESS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHh----CCCeEEEEECC
Confidence 458999999999997555444433322 25568887753
No 146
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.67 E-value=0.22 Score=53.25 Aligned_cols=42 Identities=14% Similarity=0.318 Sum_probs=27.9
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEeccC
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSATL 209 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SATl 209 (786)
....+||+||+|. ++......+..++...+....+|+.|..+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 3567999999999 44444566677777666665556555443
No 147
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.54 E-value=0.57 Score=50.12 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q 003924 60 GADVVAMARTGSGKTAAF 77 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~af 77 (786)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 457999999999999754
No 148
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.47 E-value=0.31 Score=54.48 Aligned_cols=39 Identities=23% Similarity=0.149 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
|.-+++.|++|+|||...+..+...... .|..++|++..
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~----~g~~Vl~~s~E 241 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATK----TNENVAIFSLE 241 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHH----SSCCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHh----CCCcEEEEECC
Confidence 4568999999999997655444433322 24468887743
No 149
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.47 E-value=0.087 Score=48.96 Aligned_cols=21 Identities=14% Similarity=0.028 Sum_probs=17.2
Q ss_pred HHcCCcEEEEcCCCChHHHHH
Q 003924 57 ILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 57 il~g~dvvl~a~TGSGKT~af 77 (786)
...+..+++.|++|+|||..+
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345678999999999999753
No 150
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.47 E-value=0.36 Score=50.20 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=30.5
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHH-----HcCCcEEEEcCCCChHHHHHH
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLI-----LSGADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~i-----l~g~dvvl~a~TGSGKT~afl 78 (786)
...|+++.=.....+.|...=. .|.. .|.+ ...+.+++.||+|+|||..+-
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~---~~~~---~~~~~~~~~~~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVI---LPSV---RPELFTGLRAPAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTH---HHHH---CGGGSCGGGCCCSEEEEESSSSSCHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHH---hhhh---CHHHHhcCCCCCCeEEEECcCCCCHHHHHH
Confidence 4578888767777776653210 0000 0000 124679999999999997543
No 151
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=92.39 E-value=0.05 Score=54.01 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=14.7
Q ss_pred EEEEcCCCChHHHHHHHH
Q 003924 63 VVAMARTGSGKTAAFLVP 80 (786)
Q Consensus 63 vvl~a~TGSGKT~afllp 80 (786)
+++.|+.|||||+..+..
T Consensus 8 ~l~tG~pGsGKT~~a~~~ 25 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSM 25 (199)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHH
Confidence 689999999999865443
No 152
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.10 E-value=0.11 Score=57.08 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=31.5
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHH-HHHHH--HHcCCcEEEEcCCCChHHHHH
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPL--ILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~-~aip~--il~g~dvvl~a~TGSGKT~af 77 (786)
.-+|++.|=-....+.|... .-.|+.. +.+.. +--.+.+++.||+|+|||+.+
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~---v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEV---IELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHH---THHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHH---HHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHH
Confidence 45788887666677776543 1122221 01111 112367999999999999853
No 153
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=92.07 E-value=0.42 Score=52.21 Aligned_cols=62 Identities=11% Similarity=0.161 Sum_probs=56.1
Q ss_pred cCCCcEEEEEcchhhHHHHHHHHHH---cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc
Q 003924 264 SSDQQTLIFVSTKHHVEFLNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (786)
Q Consensus 264 ~~~~k~IVF~~t~~~ae~l~~~L~~---~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv 325 (786)
..+.++||.++|+.-+..++..+.. .++.+..+||+.+..++...+..+..+..+|+|+|+-
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~ 126 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQ 126 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHH
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHH
Confidence 5678999999999999999999988 5789999999999998888889999999999999964
No 154
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.06 E-value=0.69 Score=45.64 Aligned_cols=21 Identities=29% Similarity=0.301 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAFLV 79 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afll 79 (786)
.|.-+++.|++|+|||.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 356688999999999975443
No 155
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.67 E-value=0.43 Score=50.60 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=27.9
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH----cCCcEEEEcCCCChHHHHHH
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL----SGADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il----~g~dvvl~a~TGSGKT~afl 78 (786)
..+|+++--...+++.|.. ++..+. ....+++.||+|+|||...-
T Consensus 25 p~~~~~iiG~~~~~~~l~~------------~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNV------------FIAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHH------------HHHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred CCCHHHhCChHHHHHHHHH------------HHHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 4467777555555555432 222222 12479999999999998543
No 156
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.67 E-value=0.43 Score=47.75 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=29.8
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTK 114 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~ 114 (786)
.|.-+++.|++|+|||...+..+...+. .+.+++++.-.. -..++.+.+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~-----~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLK-----MGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHH-----TTCCEEEEESSS-CHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEEccC-CHHHHHHHHH
Confidence 3566899999999999865543333332 244577776432 2344444444
No 157
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.60 E-value=0.095 Score=58.49 Aligned_cols=53 Identities=9% Similarity=0.179 Sum_probs=32.8
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHH-HHHHHH--HcCCcEEEEcCCCChHHHHH
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQR-KTMPLI--LSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~-~aip~i--l~g~dvvl~a~TGSGKT~af 77 (786)
.-+|++.|--..+.+.|.+.= -.|... +.+..+ ---+.+++.||+|+|||+.+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V---~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVV---ELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHT---HHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCHHHhccHHHHHHHHHHHH---HHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 457999987777888876531 111111 111111 12367999999999999753
No 158
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=91.54 E-value=0.65 Score=47.43 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~af 77 (786)
.+..+++.|++|+|||...
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4578999999999999753
No 159
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=91.30 E-value=1 Score=42.36 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=55.2
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCCc
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~~ 168 (786)
+.++||.|+++..+..+++.+... ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++..
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gld~~~ 103 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VAA--RGIDIEN 103 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--TTCCCSC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhh--cCCchhc
Confidence 457999999999999999988875 47899999988766544333 35678999993 223 3688888
Q ss_pred eeeEEeCC
Q 003924 169 VEYVVFDE 176 (786)
Q Consensus 169 l~~vV~DE 176 (786)
+++||.-.
T Consensus 104 ~~~Vi~~~ 111 (163)
T 2hjv_A 104 ISLVINYD 111 (163)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88888644
No 160
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.27 E-value=0.47 Score=51.14 Aligned_cols=18 Identities=17% Similarity=0.298 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
+.+++.||+|+|||..+-
T Consensus 85 ~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCEEEECSTTSCHHHHHH
T ss_pred ceEEEECCCCCcHHHHHH
Confidence 569999999999998643
No 161
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=91.19 E-value=1.7 Score=42.46 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
.+++.|++|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999754
No 162
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.02 E-value=0.28 Score=49.76 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=28.7
Q ss_pred CCccCCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHH
Q 003924 23 GGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 23 ~~f~~lgLs~~ll~~l~~~g--~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afl 78 (786)
-.|+++.-...+.+.|...- +..|..+.... +...+.+++.||+|+|||...-
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g---~~~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLG---AKVPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC---------CCCCCEEEEESCTTSSHHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcC---CCCCceEEEECCCCCCHHHHHH
Confidence 36777766666666665320 11111111100 1123569999999999997543
No 163
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=91.01 E-value=1.1 Score=43.79 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=55.3
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCCc
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~~ 168 (786)
+.++||.|+++.-+..+++.+... ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++..
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~--~Gldi~~ 122 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS--KGLDFPA 122 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH--TTCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh--cCCCccc
Confidence 347999999999999999988876 47889999988766544333 35788999993 233 3688888
Q ss_pred eeeEEeCC
Q 003924 169 VEYVVFDE 176 (786)
Q Consensus 169 l~~vV~DE 176 (786)
+.+||.=+
T Consensus 123 v~~VI~~d 130 (191)
T 2p6n_A 123 IQHVINYD 130 (191)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 88888733
No 164
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.98 E-value=0.16 Score=56.52 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=31.3
Q ss_pred CCCCccCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHH
Q 003924 21 KSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~---g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~af 77 (786)
..-+|++.|--....+.|... .+..|--++...+ --.+.+++.||+|+|||+.+
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHHH
Confidence 345788888666677666542 0111111111110 11367999999999999854
No 165
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.84 E-value=0.17 Score=56.25 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=31.1
Q ss_pred CCCCccCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHH
Q 003924 21 KSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~---g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~af 77 (786)
..-+|++.|=-..+.+.|... .+..|--++... +-..+.+++.||+|+|||+.+
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 345888887666667666532 011111111111 012367999999999999854
No 166
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.67 E-value=0.22 Score=52.28 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q 003924 61 ADVVAMARTGSGKTAAF 77 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~af 77 (786)
+.+++.||+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999753
No 167
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=90.59 E-value=0.4 Score=53.44 Aligned_cols=18 Identities=17% Similarity=0.300 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
+.+++.||+|+|||...-
T Consensus 168 ~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 569999999999997543
No 168
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.50 E-value=0.77 Score=48.00 Aligned_cols=39 Identities=26% Similarity=0.323 Sum_probs=24.4
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEe
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
....+|||||+|.+... ....+..++...+....+|+.+
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999997642 3344555555555455555543
No 169
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.50 E-value=0.29 Score=52.10 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=24.7
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEe
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
....+||+||+|.+... ....+..++...+....+|+.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35579999999997642 3345555566555455555544
No 170
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.10 E-value=0.21 Score=55.14 Aligned_cols=54 Identities=15% Similarity=0.202 Sum_probs=31.5
Q ss_pred CCCCccCCCCCHHHHHHHHHC---CCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHH
Q 003924 21 KSGGFESLNLSPNVFRAIKRK---GYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~---g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~af 77 (786)
-.-+|+++|=-..+.+.|... .+..|--++...+ --.+.+++.||+|+|||+.+
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi---~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGI---KPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTC---CCCSEEEEESSTTTTHHHHH
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCCCceECCCCchHHHHH
Confidence 345888887555566666532 1112222222111 12367999999999999854
No 171
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.08 E-value=0.83 Score=47.89 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=31.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHH-HHHH--HHcCCcEEEEcCCCChHHHHHH
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRK-TMPL--ILSGADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~-aip~--il~g~dvvl~a~TGSGKT~afl 78 (786)
.-+|++++-...+.+.|...- -+|.... .+.. +..++.+++.||+|+|||...-
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v---~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELV---QYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHH---HHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHH
Confidence 457888876677776665420 0111100 0000 1234679999999999998543
No 172
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=89.98 E-value=1.1 Score=42.57 Aligned_cols=72 Identities=22% Similarity=0.155 Sum_probs=54.8
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCCc
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~~ 168 (786)
+.++||.|+++..+..++..+... ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++..
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~~--~Gid~~~ 102 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VCA--RGIDVKQ 102 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SCC--TTTCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----chh--cCCCccc
Confidence 558999999999999988888764 57899999988766554333 35788999994 222 3688889
Q ss_pred eeeEEeC
Q 003924 169 VEYVVFD 175 (786)
Q Consensus 169 l~~vV~D 175 (786)
+.+||.-
T Consensus 103 ~~~Vi~~ 109 (175)
T 2rb4_A 103 VTIVVNF 109 (175)
T ss_dssp EEEEEES
T ss_pred CCEEEEe
Confidence 9998853
No 173
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.88 E-value=0.8 Score=52.01 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=26.6
Q ss_pred CceeeEEeCCccccccC--ChHHHHHHHHhhcccCCceEEEeccC
Q 003924 167 KSVEYVVFDEADCLFGM--GFAEQLHKILGQLSENRQTLLFSATL 209 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~--gf~~~l~~Il~~l~~~~q~ll~SATl 209 (786)
....+|||||+|.+... ++...+..++.. ....+|+.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 34568999999998753 334455555544 345677777764
No 174
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.75 E-value=0.75 Score=46.08 Aligned_cols=47 Identities=19% Similarity=0.149 Sum_probs=29.0
Q ss_pred CCceeeEEeCCcccccc-----CChHHHHHHHHhhcccCCceEEEeccCcHH
Q 003924 166 LKSVEYVVFDEADCLFG-----MGFAEQLHKILGQLSENRQTLLFSATLPSA 212 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~-----~gf~~~l~~Il~~l~~~~q~ll~SATl~~~ 212 (786)
....++||+||.-.+++ ......+..++..+...-.+++++.-....
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 34678999999987764 344555777777665434455555554433
No 175
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.66 E-value=0.32 Score=54.32 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
.+++.||+|+|||...-
T Consensus 52 ~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAE 68 (447)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 59999999999998543
No 176
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.60 E-value=0.44 Score=49.78 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=23.4
Q ss_pred ceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEe
Q 003924 168 SVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
...+|||||+|.+... ....+..++...+....+|+.|
T Consensus 107 ~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG-AQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHH-HHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHH-HHHHHHHHHhccCCCceEEEEe
Confidence 3679999999997642 2334445555544455555544
No 177
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=89.44 E-value=1.7 Score=40.85 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=55.1
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCCc
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~~ 168 (786)
+.++||.|+++.-+..++..+... ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++..
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~G~d~~~ 98 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LLA--RGIDVQQ 98 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GGT--TTCCCCS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hhh--cCCCccc
Confidence 457999999999999998888775 47889999988766544333 35678999993 222 3678888
Q ss_pred eeeEEeCCc
Q 003924 169 VEYVVFDEA 177 (786)
Q Consensus 169 l~~vV~DEa 177 (786)
+.+||.-+.
T Consensus 99 ~~~Vi~~~~ 107 (165)
T 1fuk_A 99 VSLVINYDL 107 (165)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEeCC
Confidence 888877443
No 178
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=89.44 E-value=0.26 Score=53.23 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afl 78 (786)
.+.+++.||+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3579999999999998543
No 179
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.25 E-value=1.1 Score=47.86 Aligned_cols=39 Identities=23% Similarity=0.141 Sum_probs=22.4
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEE
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~ 205 (786)
.....+|||||+|.+... ....+..++...+....+|+.
T Consensus 117 ~~~~~vliiDe~~~l~~~-~~~~Ll~~le~~~~~~~~Il~ 155 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRH-SFNALLKTLEEPPEHVKFLLA 155 (373)
T ss_dssp SSSSEEEEEECGGGSCHH-HHHHHHHHHHSCCSSEEEEEE
T ss_pred cCCeEEEEEECcchhcHH-HHHHHHHHHhcCCCceEEEEE
Confidence 345679999999997542 234444445444433333433
No 180
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=89.17 E-value=0.83 Score=48.21 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=22.5
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEE
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLF 205 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~ 205 (786)
.....+|||||||.|.... ...+...+..-|+...+|+.
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t~fIl~ 118 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYAVIVLN 118 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTEEEEEE
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCeEEEEE
Confidence 3457899999999986432 23344444443333333433
No 181
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.15 E-value=0.45 Score=51.06 Aligned_cols=39 Identities=28% Similarity=0.328 Sum_probs=26.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
.|.-+++.|++|+|||...+-.+..... .+..++|++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~-----~g~~Vl~fSlE 83 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN-----DDRGVAVFSLE 83 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH-----TTCEEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeCC
Confidence 3456899999999999755544433322 35678888743
No 182
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=89.08 E-value=1.7 Score=42.88 Aligned_cols=71 Identities=18% Similarity=0.175 Sum_probs=55.1
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCCc
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~~ 168 (786)
+.++||.||++.-+..+++.+... ++.+..++|+.+..++...+ .+..+|+|+|. .+. ..+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~--~Gidi~~ 99 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VAA--RGLDIPQ 99 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TTT--CSSSCCC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hhh--cCCCCcc
Confidence 457999999999999999988876 48899999998876654433 35688999993 233 3688888
Q ss_pred eeeEEe
Q 003924 169 VEYVVF 174 (786)
Q Consensus 169 l~~vV~ 174 (786)
+.+||.
T Consensus 100 v~~Vi~ 105 (212)
T 3eaq_A 100 VDLVVH 105 (212)
T ss_dssp BSEEEE
T ss_pred CcEEEE
Confidence 988885
No 183
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=88.50 E-value=2.5 Score=45.65 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=14.1
Q ss_pred CcEEE--EcCCCChHHHHHH
Q 003924 61 ADVVA--MARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl--~a~TGSGKT~afl 78 (786)
..+++ .|++|+|||....
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 35777 8999999997543
No 184
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=87.99 E-value=1.6 Score=49.04 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=55.6
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcC-------C
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGG-------D 131 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg-------~ 131 (786)
.+...++.|-||||||++.. .+++. .+..+|||+|+..+|.|++..+..|... .+..+..- .
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a-~l~~~-------~~~p~lvv~~~~~~A~~l~~~l~~~~~~---~v~~fp~~e~lpyd~~ 81 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVA-EIAER-------HAGPVVLIAPDMQNALRLHDEISQFTDQ---MVMNLADWETLPYDSF 81 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHH-HHHHH-------SSSCEEEEESSHHHHHHHHHHHHHTCSS---CEEECCCCCSCTTCSS
T ss_pred CCCeEEEeCCCchHHHHHHH-HHHHH-------hCCCEEEEeCCHHHHHHHHHHHHhhCCC---cEEEEeCccccccccc
Confidence 35678999999999998533 12222 1334899999999999999999987532 23333221 0
Q ss_pred Ch--h---HHH---HH-HcCCCCEEEECcHHHHHH
Q 003924 132 SM--E---SQF---EE-LAQNPDIIIATPGRLMHH 157 (786)
Q Consensus 132 ~~--~---~~~---~~-l~~~~dIiV~Tpgrll~~ 157 (786)
+. + ... .. ......|||+|...++..
T Consensus 82 ~p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~ 116 (483)
T 3hjh_A 82 SPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQR 116 (483)
T ss_dssp CCCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHHBC
T ss_pred CCChHHHHHHHHHHHHHHhCCCCEEEEEHHHHhhc
Confidence 10 1 111 12 234667999998888643
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.99 E-value=1.2 Score=47.15 Aligned_cols=38 Identities=24% Similarity=0.055 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
|.-+++.|++|+|||...+-.+..... .+..++|++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~-----~g~~vl~~slE 105 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSD-----NDDVVNLHSLE 105 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHT-----TTCEEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH-----cCCeEEEEECC
Confidence 456999999999999755544443332 24568888743
No 186
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.69 E-value=2.9 Score=41.43 Aligned_cols=23 Identities=17% Similarity=0.140 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFLVPML 82 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpil 82 (786)
|.-+++.||+|+|||..+...+.
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 46689999999999986554333
No 187
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=87.62 E-value=1.2 Score=55.78 Aligned_cols=78 Identities=14% Similarity=0.082 Sum_probs=65.5
Q ss_pred ccCCCcEEEEEcchhhHHHHHHHHHH----cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEec-ccccccCCCCcce
Q 003924 263 ISSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD-VAARGIDIPLLDN 337 (786)
Q Consensus 263 ~~~~~k~IVF~~t~~~ae~l~~~L~~----~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTd-v~arGlDIp~v~~ 337 (786)
...+.+++|.|+|..-+..++..+.. .++.+..+++..+...+..++..+..|..+|+|+|. .+...+.+.++++
T Consensus 649 ~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~l 728 (1151)
T 2eyq_A 649 VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 728 (1151)
T ss_dssp HTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEE
T ss_pred HHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccce
Confidence 34677999999999988888777764 357788999999999999999999999999999994 5666788888888
Q ss_pred eEe
Q 003924 338 VIN 340 (786)
Q Consensus 338 VI~ 340 (786)
||.
T Consensus 729 vIi 731 (1151)
T 2eyq_A 729 LIV 731 (1151)
T ss_dssp EEE
T ss_pred EEE
Confidence 884
No 188
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.50 E-value=0.8 Score=46.52 Aligned_cols=54 Identities=15% Similarity=0.119 Sum_probs=30.3
Q ss_pred CCCCccCCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHH
Q 003924 21 KSGGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g--~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~af 77 (786)
...+|+++.-.+.+.+.|...- +..|..++... +...+.+++.||+|+|||...
T Consensus 7 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 7 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLG---GKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp SCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC--------CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcC---CCCCCeEEEECcCCCCHHHHH
Confidence 3457888887777777665320 00010000000 011356999999999999754
No 189
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.49 E-value=1.3 Score=47.08 Aligned_cols=39 Identities=18% Similarity=0.442 Sum_probs=24.8
Q ss_pred CceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEe
Q 003924 167 KSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFS 206 (786)
Q Consensus 167 ~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~S 206 (786)
....++|+||+|.+.. .....+..++...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~-~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN-AAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCH-HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCH-HHHHHHHHHHhcCCCCeEEEEEe
Confidence 3478999999998764 23445556666555555555443
No 190
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=87.49 E-value=1 Score=55.93 Aligned_cols=91 Identities=11% Similarity=0.093 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHH---cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc-
Q 003924 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV- 325 (786)
Q Consensus 250 ~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~---~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv- 325 (786)
.|....+-.+......+.++||.++|+.-+..++..|.. .++.+..+||+++..++...+..+..|..+|||+|+-
T Consensus 105 GKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~r 184 (1104)
T 4ddu_A 105 GKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQF 184 (1104)
T ss_dssp CHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHH
T ss_pred cHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHH
Confidence 344433333333345678999999999999999999988 5678999999999988888899999999999999953
Q ss_pred ccc---ccCCCCcceeEe
Q 003924 326 AAR---GIDIPLLDNVIN 340 (786)
Q Consensus 326 ~ar---GlDIp~v~~VI~ 340 (786)
+.. -+++..+++||.
T Consensus 185 L~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 185 VSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp HHHSHHHHHTSCCSEEEE
T ss_pred HHHHHHhhcccCcCEEEE
Confidence 211 155667888884
No 191
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=87.48 E-value=1.9 Score=40.97 Aligned_cols=74 Identities=12% Similarity=0.135 Sum_probs=55.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCCc
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~~ 168 (786)
+.++||.|+++.-+..+++.+... ++.+..++|+.+..+....+ .+...|+|+|.- +. ..+++..
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~~--~Gldi~~ 99 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----FG--RGMDIER 99 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----CS--TTCCGGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----hh--cCcchhh
Confidence 457999999999999999888775 47889999988766544333 357889999942 22 3678888
Q ss_pred eeeEEeCCc
Q 003924 169 VEYVVFDEA 177 (786)
Q Consensus 169 l~~vV~DEa 177 (786)
+.+||.-+.
T Consensus 100 ~~~Vi~~d~ 108 (172)
T 1t5i_A 100 VNIAFNYDM 108 (172)
T ss_dssp CSEEEESSC
T ss_pred CCEEEEECC
Confidence 888886443
No 192
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=87.46 E-value=0.8 Score=44.50 Aligned_cols=137 Identities=16% Similarity=0.175 Sum_probs=81.2
Q ss_pred ChHHHHHHHHHHHcCC--cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCe
Q 003924 46 PTPIQRKTMPLILSGA--DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLR 123 (786)
Q Consensus 46 ptpiQ~~aip~il~g~--dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~ 123 (786)
..+-|..++..++... -.++.++-|++||...+.-++..... .|.++.||+|+..-...+.+. .++.
T Consensus 35 ~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~----~Gr~V~vLAp~~~s~~~l~~~-------~~l~ 103 (189)
T 2l8b_A 35 RTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE----QGREVQIIAADRRSQMNMKQD-------ERLS 103 (189)
T ss_dssp CHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH----TTCCEEEECSTTHHHHHHSCT-------TTCS
T ss_pred cCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh----cCeEEEEEcCchHHHHHHHhh-------cCcC
Confidence 4577999999887654 47789999999998865544433333 588999999998765553322 1111
Q ss_pred EEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhhc-ccCCce
Q 003924 124 ISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQL-SENRQT 202 (786)
Q Consensus 124 v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l-~~~~q~ 202 (786)
- . ++ |- +.+.. +...|..-+++|||||-.|. ..++..++... ..+.|+
T Consensus 104 ~------~--------------t~--t~----~~ll~-~~~~~tp~s~lIVD~AekLS----~kE~~~Lld~A~~~naqv 152 (189)
T 2l8b_A 104 G------E--------------LI--TG----RRQLL-EGMAFTPGSTVIVDQGEKLS----LKETLTLLDGAARHNVQV 152 (189)
T ss_dssp S------C--------------SS--ST----TTTTT-TSCCCCCCCEEEEEESSSHH----HHHHHHHHHHHHHTTCCE
T ss_pred c------c--------------ee--eh----hhhhc-CCCCCCCCCEEEEechhhcC----HHHHHHHHHHHHhcCCEE
Confidence 0 0 00 11 11111 23434555689999999865 34444444433 346777
Q ss_pred EEEeccC----cHHHHHHHHhcCCCC
Q 003924 203 LLFSATL----PSALAEFAKAGLRDP 224 (786)
Q Consensus 203 ll~SATl----~~~l~~~~~~~l~~p 224 (786)
||+--+- .+.+.-+.+.+....
T Consensus 153 vll~~~~RqG~GnAl~vl~~agv~t~ 178 (189)
T 2l8b_A 153 LITDSGQRTGTGSALMAMKDAGVNTY 178 (189)
T ss_dssp EEEESSTTTCSHHHHHHHHHTTCCCC
T ss_pred EEeCCcccccCCCHHHHHHhCCCceE
Confidence 7664331 455555665555433
No 193
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.37 E-value=0.24 Score=59.17 Aligned_cols=52 Identities=19% Similarity=0.232 Sum_probs=31.6
Q ss_pred CCccCCCCCHHHHHHHHHCC-C--CCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHH
Q 003924 23 GGFESLNLSPNVFRAIKRKG-Y--KVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 23 ~~f~~lgLs~~ll~~l~~~g-~--~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~af 77 (786)
-.|++++.-..+.+.|...= + ..|.-++..- +-..+.+++.||+|+|||+.+
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g---~~~~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG---MTPSKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC---CCCCSCCEEESSTTSSHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC---CCCCceEEEecCCCCCchHHH
Confidence 46888888888888877541 1 1111110000 011356999999999999754
No 194
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=86.91 E-value=1.3 Score=46.48 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
..+++.|++|+|||...-
T Consensus 39 ~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCEEECCTTCCCHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 679999999999997543
No 195
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.79 E-value=3.3 Score=43.25 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=24.1
Q ss_pred CceeeEEeCCccccc-cCChHHHHHHHHhhcccCCceEEEeccCcHH
Q 003924 167 KSVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSA 212 (786)
Q Consensus 167 ~~l~~vV~DEah~l~-~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~ 212 (786)
..+++||||+.=.+. +......+..+...+.+..-++.+.++....
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~ 225 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE 225 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHH
Confidence 467899999995432 2122344444444443333344466654433
No 196
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.76 E-value=1.4 Score=43.12 Aligned_cols=33 Identities=24% Similarity=0.213 Sum_probs=22.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~ 100 (786)
|.-+++.|++|+|||..+...+. . .+..++++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~----~----~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL----L----SGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH----H----HCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH----H----cCCcEEEEE
Confidence 45689999999999976553333 1 244577765
No 197
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=86.59 E-value=1.7 Score=49.08 Aligned_cols=42 Identities=19% Similarity=0.290 Sum_probs=27.0
Q ss_pred eeeEEeCCccccccCC----------hHHHHHHHHhhcccCCceEEEeccCc
Q 003924 169 VEYVVFDEADCLFGMG----------FAEQLHKILGQLSENRQTLLFSATLP 210 (786)
Q Consensus 169 l~~vV~DEah~l~~~g----------f~~~l~~Il~~l~~~~q~ll~SATl~ 210 (786)
..+|+|||+|.+.... ....+..++..+.....++++.||-.
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~ 349 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNR 349 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESC
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCC
Confidence 3689999999887421 23445555555555666777777743
No 198
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=86.48 E-value=3.2 Score=40.69 Aligned_cols=70 Identities=9% Similarity=0.183 Sum_probs=51.4
Q ss_pred CcEEEEEcchhhHHHHHHHHHHc-----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc-c-----ccccCCCCc
Q 003924 267 QQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----ARGIDIPLL 335 (786)
Q Consensus 267 ~k~IVF~~t~~~ae~l~~~L~~~-----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv-~-----arGlDIp~v 335 (786)
.++||.|+|+.-+..++..+... ++.+..++|+.+...... .+..+..+|+|+|.- + ...+++..+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~ 159 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTPGRILALARNKSLNLKHI 159 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECHHHHHHHHHTTSSCCTTC
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCHHHHHHHHHhCCCCcccC
Confidence 48999999999999988877764 678899999988765543 345567799999953 1 123455666
Q ss_pred ceeE
Q 003924 336 DNVI 339 (786)
Q Consensus 336 ~~VI 339 (786)
++||
T Consensus 160 ~~lV 163 (220)
T 1t6n_A 160 KHFI 163 (220)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6666
No 199
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=86.41 E-value=0.48 Score=47.45 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=25.6
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P 101 (786)
|.-+++.|++|+|||...+-.+.+.+... +..++|++-
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~----~~~v~~~s~ 67 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY----GEPGVFVTL 67 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH----CCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc----CCCceeecc
Confidence 45689999999999976554444443332 445777763
No 200
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=86.06 E-value=0.93 Score=50.96 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=30.4
Q ss_pred CCCCccCCCCCHHHHHHHHHCC--CCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHH
Q 003924 21 KSGGFESLNLSPNVFRAIKRKG--YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g--~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~af 77 (786)
..-+|+++.-.......|...- +..|..++.-. +--.+.+++.||+|+|||+.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g---~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIG---ARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTT---CCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcC---CCCCCeEEEECCCCCCHHHHH
Confidence 3457998876666666665420 11111111000 001256999999999999854
No 201
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.04 E-value=3.8 Score=42.38 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=24.0
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P 101 (786)
.|.-+++.|++|+|||......+.. +... .|..++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~-~~~~---~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ-WGTA---MGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH-HHHT---SCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH-HHHH---cCCeEEEEeC
Confidence 4567899999999999754433322 2221 2445666653
No 202
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.90 E-value=0.96 Score=59.00 Aligned_cols=45 Identities=20% Similarity=0.231 Sum_probs=32.4
Q ss_pred HHHHHc------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcH
Q 003924 54 MPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (786)
Q Consensus 54 ip~il~------g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptr 103 (786)
+..++. ++.+++.||+|+|||..++..+.+... .|.+++|+....
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~-----~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR-----EGKTCAFIDAEH 1465 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT-----TTCCEEEECTTS
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEEEccc
Confidence 566666 578999999999999876654444332 366788888664
No 203
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=85.48 E-value=2.1 Score=44.93 Aligned_cols=19 Identities=32% Similarity=0.508 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afl 78 (786)
+.-+++.|++|+|||....
T Consensus 105 g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp SSEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999997644
No 204
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.46 E-value=0.61 Score=55.76 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=26.1
Q ss_pred ceeeEEeCCccccccC------C----hHHHHHHHHhhcccCCceEEEeccC
Q 003924 168 SVEYVVFDEADCLFGM------G----FAEQLHKILGQLSENRQTLLFSATL 209 (786)
Q Consensus 168 ~l~~vV~DEah~l~~~------g----f~~~l~~Il~~l~~~~q~ll~SATl 209 (786)
...+|+|||+|.++.. . ...++...+..+.....++++-||-
T Consensus 297 ~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN 348 (806)
T 3cf2_A 297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN 348 (806)
T ss_dssp CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECS
T ss_pred CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecC
Confidence 4568999999998732 1 1233444444455556677777774
No 205
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.23 E-value=1.8 Score=52.40 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=15.1
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
.++++.||+|+|||...-
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 469999999999997543
No 206
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=85.14 E-value=0.88 Score=47.89 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~af 77 (786)
....+++.|++|+|||.++
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 3567999999999999754
No 207
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=84.92 E-value=6.2 Score=44.74 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCE
Q 003924 71 SGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDI 146 (786)
Q Consensus 71 SGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dI 146 (786)
..+....+..+...+... ..+.++||.|+|+.-+..+++.+..... .++.+..++|+.+..+....+ .+..+|
T Consensus 319 ~~~~~~~~~~l~~~~~~~--~~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~v 395 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKER--DSNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGI 395 (563)
T ss_dssp THHHHHHHHHHHHHHHHT--TTCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEE
T ss_pred HhhHHHHHHHHHHHHhhc--CCCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCE
Confidence 344444444444444432 2466899999999999999998887532 357888999988776554333 367899
Q ss_pred EEECcHHHHHHHhhccCCCCCceeeEEeCC
Q 003924 147 IIATPGRLMHHLSEVEDMSLKSVEYVVFDE 176 (786)
Q Consensus 147 iV~Tpgrll~~l~~~~~l~l~~l~~vV~DE 176 (786)
+|||. .+. ..+++.++.+||.-.
T Consensus 396 LvaT~-----~~~--~GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 396 LVCTD-----VGA--RGMDFPNVHEVLQIG 418 (563)
T ss_dssp EEECG-----GGT--SSCCCTTCCEEEEES
T ss_pred EEEcc-----hhh--cCCCcccCCEEEEEC
Confidence 99995 233 378888898888544
No 208
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.73 E-value=1.2 Score=49.64 Aligned_cols=38 Identities=24% Similarity=0.058 Sum_probs=26.4
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
|.-+++.|++|+|||...+-.+...... |..++|++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~-----g~~vl~fSlE 234 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDN-----DDVVNLHSLE 234 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHT-----TCEEEEECSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHc-----CCEEEEEECC
Confidence 3559999999999997655444443332 5678888743
No 209
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=84.30 E-value=5.2 Score=46.19 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=19.6
Q ss_pred HHHHHcCCcEEEEcCCCChHHHHH
Q 003924 54 MPLILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 54 ip~il~g~dvvl~a~TGSGKT~af 77 (786)
-..+..+..+++.||+|+|||..+
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHH
T ss_pred cccccCCCEEEEEeCCCCCHHHHH
Confidence 344567889999999999999854
No 210
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=84.29 E-value=0.31 Score=50.84 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=26.1
Q ss_pred CCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHHH
Q 003924 23 GGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 23 ~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~afl 78 (786)
..|+++--.+..++.|...=- . -....+++.||+|+|||....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~-~------------~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVE-R------------KNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTT-T------------TCCCCEEEESSSSSSHHHHHH
T ss_pred CCHHHHhCCHHHHHHHHHHHh-C------------CCCCeEEEECcCCcCHHHHHH
Confidence 456666555666665553210 0 011259999999999997543
No 211
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=83.74 E-value=3.9 Score=44.15 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=56.2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCC
Q 003924 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (786)
Q Consensus 92 ~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~ 167 (786)
.+.++||.|+++..+..+++.+... ++.+..++|+.+..+....+ .+..+|+|+|. .+.. .+++.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~~--Gidip 343 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAAR--GLDIS 343 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHHT--TSCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhhc--CCCcc
Confidence 4668999999999999999888775 47899999988866554333 35788999994 3333 78899
Q ss_pred ceeeEEe
Q 003924 168 SVEYVVF 174 (786)
Q Consensus 168 ~l~~vV~ 174 (786)
++.+||.
T Consensus 344 ~v~~Vi~ 350 (417)
T 2i4i_A 344 NVKHVIN 350 (417)
T ss_dssp CEEEEEE
T ss_pred cCCEEEE
Confidence 9998886
No 212
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=83.72 E-value=3.6 Score=42.23 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=19.7
Q ss_pred HHcCCcEEEEcCCCChHHHHHHHHHH
Q 003924 57 ILSGADVVAMARTGSGKTAAFLVPML 82 (786)
Q Consensus 57 il~g~dvvl~a~TGSGKT~afllpil 82 (786)
+..|.-+++.|++|||||..++..+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 44677799999999999976554443
No 213
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=83.67 E-value=3.3 Score=43.78 Aligned_cols=56 Identities=14% Similarity=0.008 Sum_probs=30.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhc-CCCCCeEEEEEcCcHHH-HHHHHHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH-VPQGGVRALILSPTRDL-ALQTLKFTKEL 116 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~-~~~~g~r~LIL~PtreL-a~Q~~~~l~~l 116 (786)
.-+++.|++|+|||...+..+.+..... ....+.+++|+.-...+ ..++...+..+
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5689999999999976554433321110 00014578888754322 23444444443
No 214
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=83.50 E-value=1.9 Score=51.36 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afl 78 (786)
+.++++.|++|+|||...-
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 3579999999999997643
No 215
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=83.27 E-value=27 Score=36.25 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=23.9
Q ss_pred eeeEEeCCcccccc---CChHHHHHHHHhhcccCCceEEEeccC
Q 003924 169 VEYVVFDEADCLFG---MGFAEQLHKILGQLSENRQTLLFSATL 209 (786)
Q Consensus 169 l~~vV~DEah~l~~---~gf~~~l~~Il~~l~~~~q~ll~SATl 209 (786)
--+|||||+|.+.. ..+...+..+....+ .. .++++++.
T Consensus 138 ~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~-~~-~~i~~g~~ 179 (357)
T 2fna_A 138 NVIIVLDEAQELVKLRGVNLLPALAYAYDNLK-RI-KFIMSGSE 179 (357)
T ss_dssp CEEEEEETGGGGGGCTTCCCHHHHHHHHHHCT-TE-EEEEEESS
T ss_pred CeEEEEECHHHhhccCchhHHHHHHHHHHcCC-Ce-EEEEEcCc
Confidence 34899999999874 356666666655432 33 34445543
No 216
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=83.21 E-value=3.1 Score=41.56 Aligned_cols=88 Identities=13% Similarity=0.239 Sum_probs=48.7
Q ss_pred HHHHHH-HHHHHHHhcc--CCCcEEEEEcchhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEE
Q 003924 249 EEKHAA-LLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (786)
Q Consensus 249 ~~k~~~-Ll~lL~~~~~--~~~k~IVF~~t~~~ae~l~~~L~~~----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILV 321 (786)
..|... ++.++..... .+.++||.++|+.-+..++..+... ++.+..++|+.+... ....+..+..+|+|
T Consensus 78 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~~~~Ilv 154 (237)
T 3bor_A 78 TGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAEAPHIVV 154 (237)
T ss_dssp HHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEE
T ss_pred CcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcCCCCEEE
Confidence 345433 4444443221 3568999999999999998888764 466777787765432 33445566789999
Q ss_pred Eec-----cccc-ccCCCCcceeE
Q 003924 322 VTD-----VAAR-GIDIPLLDNVI 339 (786)
Q Consensus 322 aTd-----v~ar-GlDIp~v~~VI 339 (786)
+|+ .+.+ .+++..+++||
T Consensus 155 ~Tp~~l~~~l~~~~~~~~~~~~lV 178 (237)
T 3bor_A 155 GTPGRVFDMLNRRYLSPKWIKMFV 178 (237)
T ss_dssp ECHHHHHHHHHTTSSCSTTCCEEE
T ss_pred ECHHHHHHHHHhCCcCcccCcEEE
Confidence 994 2222 24455555555
No 217
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=82.78 E-value=8.5 Score=43.96 Aligned_cols=78 Identities=18% Similarity=0.178 Sum_probs=58.6
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCC
Q 003924 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (786)
Q Consensus 92 ~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~ 167 (786)
.+.++||.|+|+.-+..+++.+..... .++.+..++|+.+..+....+ .+..+|+|||. .+. ..+++.
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~~--~GiDip 358 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VGA--RGMDFP 358 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GGT--SSCCCT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hhh--cCCCcc
Confidence 466899999999999999998887532 357888999998776554333 36788999995 233 378888
Q ss_pred ceeeEEeCCc
Q 003924 168 SVEYVVFDEA 177 (786)
Q Consensus 168 ~l~~vV~DEa 177 (786)
++.+||.-..
T Consensus 359 ~v~~VI~~~~ 368 (579)
T 3sqw_A 359 NVHEVLQIGV 368 (579)
T ss_dssp TCCEEEEESC
T ss_pred cCCEEEEcCC
Confidence 8998886543
No 218
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=82.75 E-value=3.3 Score=41.44 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=50.8
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHH----cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc-----cc-cccCCCC
Q 003924 265 SDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AA-RGIDIPL 334 (786)
Q Consensus 265 ~~~k~IVF~~t~~~ae~l~~~L~~----~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv-----~a-rGlDIp~ 334 (786)
.+..+||.++|+.-+..++..+.. .++.+..++|+.+.......+.. ..+|+|+|+- +. ..+++..
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp~~l~~~l~~~~~~~~~ 176 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATPGRLIDFLECGKTNLRR 176 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECHHHHHHHHHHTSCCCTT
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECHHHHHHHHHcCCCCccc
Confidence 356799999999988887766654 48899999999987765544432 4789999952 22 2345666
Q ss_pred cceeE
Q 003924 335 LDNVI 339 (786)
Q Consensus 335 v~~VI 339 (786)
+++||
T Consensus 177 ~~~lV 181 (242)
T 3fe2_A 177 TTYLV 181 (242)
T ss_dssp CCEEE
T ss_pred ccEEE
Confidence 76666
No 219
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=82.23 E-value=3 Score=41.20 Aligned_cols=71 Identities=11% Similarity=0.232 Sum_probs=45.5
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHc---CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc-c-----ccccCCCCc
Q 003924 265 SDQQTLIFVSTKHHVEFLNVLFREE---GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A-----ARGIDIPLL 335 (786)
Q Consensus 265 ~~~k~IVF~~t~~~ae~l~~~L~~~---g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv-~-----arGlDIp~v 335 (786)
.+.++||.++|+.-+..++..+... ++.+..++|+.+...+... +. ...+|+|+|+- + ...+++..+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 4678999999999999999888774 6778888988765543322 22 34789999952 1 123455556
Q ss_pred ceeE
Q 003924 336 DNVI 339 (786)
Q Consensus 336 ~~VI 339 (786)
++||
T Consensus 169 ~~lV 172 (228)
T 3iuy_A 169 TYLV 172 (228)
T ss_dssp CEEE
T ss_pred eEEE
Confidence 6655
No 220
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=81.88 E-value=3.3 Score=44.48 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=29.1
Q ss_pred HHHHHHc------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 53 aip~il~------g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
.+..++. |.-+++.|++|||||...+..+..... .+..++|+.-.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~-----~g~~vlyi~~E 98 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQA-----AGGIAAFIDAE 98 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-----TTCCEEEEESS
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEECC
Confidence 3445555 356899999999999865544443332 24567777643
No 221
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=81.67 E-value=3.1 Score=43.81 Aligned_cols=56 Identities=14% Similarity=0.169 Sum_probs=31.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhc-------CCCCC----eEEEEEcCcHHH-HHHHHHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH-------VPQGG----VRALILSPTRDL-ALQTLKFTKEL 116 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~-------~~~~g----~r~LIL~PtreL-a~Q~~~~l~~l 116 (786)
.-+++.|++|+|||...+-.+.+..... ....| .+++|+.-...+ ..++...+..+
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 4589999999999976554444321110 00123 678888755432 34444444444
No 222
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=81.62 E-value=2.8 Score=47.27 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=26.5
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
.|.-+++.|++|+|||...+-.+.+.... .+..++|++-.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~----~g~~vl~~s~E 280 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA----MGKKVGLAMLE 280 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT----SCCCEEEEESS
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh----cCCcEEEEecc
Confidence 34568999999999997655444433322 25568888743
No 223
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=81.48 E-value=4.2 Score=43.98 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=29.2
Q ss_pred HHHHHHc------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcH
Q 003924 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (786)
Q Consensus 53 aip~il~------g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptr 103 (786)
.+..++. |.-+++.|++|+|||...+-.+.+... .+..++|+....
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~-----~g~~vlyi~~E~ 112 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQK-----AGGTCAFIDAEH 112 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-----TTCCEEEEESSC
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHH-----CCCeEEEEECCC
Confidence 4455555 356889999999999765544433322 244678877543
No 224
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=81.43 E-value=3.9 Score=42.88 Aligned_cols=73 Identities=16% Similarity=0.158 Sum_probs=55.2
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCCc
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~~ 168 (786)
+.++||.|+|+.-+..+++.+... ++.+..++|+.+..++...+ .+..+|+|+|. .+. ..+++..
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~--~Gidi~~ 96 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAA--RGLDIPQ 96 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTT--CSTTCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhh--cCccccc
Confidence 457999999999999888877654 58899999998776654433 35788999994 233 3688889
Q ss_pred eeeEEeCC
Q 003924 169 VEYVVFDE 176 (786)
Q Consensus 169 l~~vV~DE 176 (786)
+.+||.=+
T Consensus 97 v~~VI~~d 104 (300)
T 3i32_A 97 VDLVVHYR 104 (300)
T ss_dssp CSEEEESS
T ss_pred eeEEEEcC
Confidence 98888533
No 225
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=81.18 E-value=2.5 Score=40.81 Aligned_cols=89 Identities=18% Similarity=0.201 Sum_probs=52.5
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHH---HH-cCCC
Q 003924 69 TGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE---EL-AQNP 144 (786)
Q Consensus 69 TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~---~l-~~~~ 144 (786)
..+.|... ++-++.. . ..+.++||.|+++.-+..+++.+... ++.+..++|+.+..+... .+ .+..
T Consensus 28 ~~~~K~~~-L~~ll~~---~--~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~ 97 (185)
T 2jgn_A 28 EESDKRSF-LLDLLNA---T--GKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKS 97 (185)
T ss_dssp CGGGHHHH-HHHHHHH---C---CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSS
T ss_pred CcHHHHHH-HHHHHHh---c--CCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 34667643 3333332 1 13567999999999999999888775 478889998866544322 22 3578
Q ss_pred CEEEECcHHHHHHHhhccCCCCCceeeEEe
Q 003924 145 DIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174 (786)
Q Consensus 145 dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~ 174 (786)
.|+|+|.- +. ..+++..+.+||.
T Consensus 98 ~vLvaT~~-----~~--~Gldi~~~~~VI~ 120 (185)
T 2jgn_A 98 PILVATAV-----AA--RGLDISNVKHVIN 120 (185)
T ss_dssp SEEEEEC-------------CCCSBSEEEE
T ss_pred eEEEEcCh-----hh--cCCCcccCCEEEE
Confidence 89999942 22 2677888888886
No 226
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=80.90 E-value=1.7 Score=46.98 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=28.8
Q ss_pred HHHHHHc------CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcH
Q 003924 53 TMPLILS------GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (786)
Q Consensus 53 aip~il~------g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptr 103 (786)
.+..++. |.-+++.||+|+|||...+. ++..+.. .+..++|+.+..
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~-la~~~~~----~gg~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALH-AIAEAQK----MGGVAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHH-HHHHHHH----TTCCEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHH-HHHHHHh----cCCeEEEEeccc
Confidence 4555555 34588999999999975443 3333322 244678887644
No 227
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=80.86 E-value=1.7 Score=46.09 Aligned_cols=91 Identities=13% Similarity=0.120 Sum_probs=51.7
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHc
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~ 141 (786)
-+++.||+|+|||...+-.+.+..... .+.+++|+.....+... .++.++- ++
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g---~g~~vlyId~E~s~~~~---ra~~lGv--d~------------------- 82 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY---PDAVCLFYDSEFGITPA---YLRSMGV--DP------------------- 82 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC---TTCEEEEEESSCCCCHH---HHHHTTC--CG-------------------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC---CCceEEEEeccchhhHH---HHHHhCC--CH-------------------
Confidence 478999999999987665555443321 25678998876554322 2444441 11
Q ss_pred CCCCEEEECcHHH----HHHHhhccCCCCCceeeEEeCCccccc
Q 003924 142 QNPDIIIATPGRL----MHHLSEVEDMSLKSVEYVVFDEADCLF 181 (786)
Q Consensus 142 ~~~dIiV~Tpgrl----l~~l~~~~~l~l~~l~~vV~DEah~l~ 181 (786)
.++++..|..+ +.++.....+.-..+++||||-+..+.
T Consensus 83 --d~llv~~~~~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 83 --ERVIHTPVQSLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --GGEEEEECSBHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred --HHeEEEcCCCHHHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 12444444333 222221111233468899999998876
No 228
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=80.50 E-value=2.4 Score=48.36 Aligned_cols=18 Identities=28% Similarity=0.339 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHH
Q 003924 60 GADVVAMARTGSGKTAAF 77 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~af 77 (786)
+..+++.||+|+|||..+
T Consensus 108 g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp SCEEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567999999999999754
No 229
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=80.44 E-value=4.5 Score=42.54 Aligned_cols=74 Identities=14% Similarity=0.217 Sum_probs=55.4
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCC
Q 003924 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (786)
Q Consensus 92 ~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~ 167 (786)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+..+....+ .+..+|+|+|. .+.. .+++.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~--Gid~~ 305 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR--GIDVN 305 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH--HCCCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc--CCCcc
Confidence 4567999999999999999988875 47888999987766544332 35788999994 2222 67888
Q ss_pred ceeeEEeCC
Q 003924 168 SVEYVVFDE 176 (786)
Q Consensus 168 ~l~~vV~DE 176 (786)
++++||.-.
T Consensus 306 ~~~~Vi~~~ 314 (367)
T 1hv8_A 306 DLNCVINYH 314 (367)
T ss_dssp CCSEEEESS
T ss_pred cCCEEEEec
Confidence 888888643
No 230
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=80.33 E-value=5.4 Score=44.03 Aligned_cols=17 Identities=29% Similarity=0.218 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
-+++.+++|+|||....
T Consensus 100 vi~i~G~~GsGKTT~~~ 116 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAA 116 (425)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36778999999997644
No 231
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=80.02 E-value=4.5 Score=43.45 Aligned_cols=72 Identities=17% Similarity=0.170 Sum_probs=55.9
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCCc
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~~ 168 (786)
+.++||.|+++.-+..+++.+... ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip~ 334 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA--RGIDVEQ 334 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GGT--SSCCCTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----ccc--cCCCccC
Confidence 458999999999999999988876 47888999988776654433 35688999994 333 3788999
Q ss_pred eeeEEeC
Q 003924 169 VEYVVFD 175 (786)
Q Consensus 169 l~~vV~D 175 (786)
+++||.-
T Consensus 335 ~~~Vi~~ 341 (412)
T 3fht_A 335 VSVVINF 341 (412)
T ss_dssp EEEEEES
T ss_pred CCEEEEE
Confidence 9998853
No 232
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=79.92 E-value=6.2 Score=37.92 Aligned_cols=71 Identities=14% Similarity=0.169 Sum_probs=48.5
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHc--CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc-c----c-cccCCCCcc
Q 003924 265 SDQQTLIFVSTKHHVEFLNVLFREE--GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A----A-RGIDIPLLD 336 (786)
Q Consensus 265 ~~~k~IVF~~t~~~ae~l~~~L~~~--g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv-~----a-rGlDIp~v~ 336 (786)
.+.++||.++|+.-+..++..+... .+.+..++|+.+.......+. ...+|+|+|.- + . ..+++..++
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 4568999999999999999888876 367788888877554433322 25789999952 1 1 234455555
Q ss_pred eeE
Q 003924 337 NVI 339 (786)
Q Consensus 337 ~VI 339 (786)
+||
T Consensus 147 ~iV 149 (207)
T 2gxq_A 147 VAV 149 (207)
T ss_dssp EEE
T ss_pred EEE
Confidence 555
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=79.89 E-value=11 Score=39.89 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=32.3
Q ss_pred ceeeEEeCCccccc-cCChHHHHHHHHhhcccCCceEEEeccCcHHHHHHHHh
Q 003924 168 SVEYVVFDEADCLF-GMGFAEQLHKILGQLSENRQTLLFSATLPSALAEFAKA 219 (786)
Q Consensus 168 ~l~~vV~DEah~l~-~~gf~~~l~~Il~~l~~~~q~ll~SATl~~~l~~~~~~ 219 (786)
..+++++|.+-++- .......+..+...+.+...++.+.+|....+...++.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~ 263 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQ 263 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHH
Confidence 34578888887643 23456666666666666666777777765555554443
No 234
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=79.80 E-value=14 Score=43.00 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=60.3
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCC
Q 003924 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (786)
Q Consensus 92 ~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~ 167 (786)
.+.++||+|+|+..+..+.+.+.+. ++.+..++|+.+..+....+ .+..+|+|||. .+. ..+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l~--~GlDip 512 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LLR--EGLDIP 512 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CCS--TTCCCT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hhh--CCcccC
Confidence 3668999999999999999888876 47888888877655544332 25789999995 233 378899
Q ss_pred ceeeEEeCCcccc
Q 003924 168 SVEYVVFDEADCL 180 (786)
Q Consensus 168 ~l~~vV~DEah~l 180 (786)
.+++||+-+++..
T Consensus 513 ~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 513 EVSLVAILDADKE 525 (661)
T ss_dssp TEEEEEETTTTCC
T ss_pred CCCEEEEeCcccc
Confidence 9999999998764
No 235
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=79.54 E-value=3.9 Score=40.56 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=40.3
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEec
Q 003924 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (786)
Q Consensus 265 ~~~k~IVF~~t~~~ae~l~~~L~~~----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTd 324 (786)
.+.++||.++|+.-+..++..+... ++.+..++|+.+.......+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 4568999999999999988888765 37788889987655433322 4678999995
No 236
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=79.40 E-value=4.7 Score=42.97 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=57.3
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCC
Q 003924 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (786)
Q Consensus 92 ~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~ 167 (786)
.+.++||+|+++.-+..+++.+... ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++.
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~--~Gidi~ 317 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LFG--RGMDIE 317 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CCS--SCBCCT
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hhh--cCCCcc
Confidence 3568999999999999999888775 47888999988766544333 35788999994 222 368889
Q ss_pred ceeeEEeCCcc
Q 003924 168 SVEYVVFDEAD 178 (786)
Q Consensus 168 ~l~~vV~DEah 178 (786)
.+++||+-..-
T Consensus 318 ~~~~Vi~~~~p 328 (391)
T 1xti_A 318 RVNIAFNYDMP 328 (391)
T ss_dssp TEEEEEESSCC
T ss_pred cCCEEEEeCCC
Confidence 99999875543
No 237
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=79.22 E-value=4.9 Score=39.76 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=55.3
Q ss_pred HHHHH-HHHHHHHhc--cCCCcEEEEEcchhhHHHHHHHHHHc-----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEE
Q 003924 250 EKHAA-LLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (786)
Q Consensus 250 ~k~~~-Ll~lL~~~~--~~~~k~IVF~~t~~~ae~l~~~L~~~-----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILV 321 (786)
.|... ++.++.... ..+.++||.++|+.-+..++..+... ++.+..++|+.+...+...+ ...+|+|
T Consensus 73 GKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv 147 (230)
T 2oxc_A 73 GKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAV 147 (230)
T ss_dssp SHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEE
T ss_pred cHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEE
Confidence 34433 444444432 23468999999999999998888764 57788899998876554332 3578999
Q ss_pred Eecc-c-----ccccCCCCcceeE
Q 003924 322 VTDV-A-----ARGIDIPLLDNVI 339 (786)
Q Consensus 322 aTdv-~-----arGlDIp~v~~VI 339 (786)
+|.- + ...+++..+++||
T Consensus 148 ~Tp~~l~~~~~~~~~~~~~~~~lV 171 (230)
T 2oxc_A 148 GSPGRIKQLIELDYLNPGSIRLFI 171 (230)
T ss_dssp ECHHHHHHHHHTTSSCGGGCCEEE
T ss_pred ECHHHHHHHHhcCCcccccCCEEE
Confidence 9953 1 1233444555555
No 238
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=78.55 E-value=5.5 Score=40.16 Aligned_cols=70 Identities=19% Similarity=0.342 Sum_probs=50.0
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc-c----c--cccCCCC
Q 003924 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-A----A--RGIDIPL 334 (786)
Q Consensus 266 ~~k~IVF~~t~~~ae~l~~~L~~~----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv-~----a--rGlDIp~ 334 (786)
+.++||.++|+.-+..++..+... ++.+..++|+.+.......+ .+..+|+|+|+- + . .++++..
T Consensus 111 ~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~ 186 (249)
T 3ber_A 111 RLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLRA 186 (249)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCccc
Confidence 457999999999988888777654 78889999998876544332 356789999953 1 1 3456666
Q ss_pred cceeE
Q 003924 335 LDNVI 339 (786)
Q Consensus 335 v~~VI 339 (786)
+++||
T Consensus 187 ~~~lV 191 (249)
T 3ber_A 187 LKYLV 191 (249)
T ss_dssp CCEEE
T ss_pred cCEEE
Confidence 66666
No 239
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=78.55 E-value=5.8 Score=42.14 Aligned_cols=77 Identities=17% Similarity=0.147 Sum_probs=58.5
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCC
Q 003924 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLK 167 (786)
Q Consensus 92 ~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~ 167 (786)
.+.++||.|+++.-+..+++.+... ++.+..++|+.+..+....+ .+..+|+|+|. .+. ..+++.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidip 310 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VLA--RGIDIP 310 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GGS--SSCCCT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--cCCCcc
Confidence 3568999999999999999888775 47888899988766544333 35688999994 233 378899
Q ss_pred ceeeEEeCCccc
Q 003924 168 SVEYVVFDEADC 179 (786)
Q Consensus 168 ~l~~vV~DEah~ 179 (786)
++++||.-....
T Consensus 311 ~~~~Vi~~~~p~ 322 (395)
T 3pey_A 311 TVSMVVNYDLPT 322 (395)
T ss_dssp TEEEEEESSCCB
T ss_pred cCCEEEEcCCCC
Confidence 999999766543
No 240
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=78.42 E-value=8.9 Score=41.60 Aligned_cols=96 Identities=19% Similarity=0.219 Sum_probs=61.7
Q ss_pred CCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEc--------CCChhHHHHHH
Q 003924 69 TGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG--------GDSMESQFEEL 140 (786)
Q Consensus 69 TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~g--------g~~~~~~~~~l 140 (786)
..++|.... .-++...... ..+.++||.|+++.-+..+.+.+... ++.+..++| +.+..+....+
T Consensus 340 ~~~~k~~~l-~~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~ 412 (494)
T 1wp9_A 340 LDHPKMDKL-KEIIREQLQR--KQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLIL 412 (494)
T ss_dssp CSCHHHHHH-HHHHHHHHHH--CTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHH
T ss_pred CCChHHHHH-HHHHHHHhcc--CCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHH
Confidence 456666543 3333333211 13668999999999999998888876 588888988 55544433222
Q ss_pred ----cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCcc
Q 003924 141 ----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (786)
Q Consensus 141 ----~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah 178 (786)
.+...|+|+|. .+. ..+++..+.+||+-+..
T Consensus 413 ~~F~~~~~~vLv~T~-----~~~--~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 413 DEFARGEFNVLVATS-----VGE--EGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp HHHHHTSCSEEEECG-----GGG--GGGGSTTCCEEEESSCC
T ss_pred HHHhcCCceEEEECC-----ccc--cCCCchhCCEEEEeCCC
Confidence 35688999993 222 36888888888865543
No 241
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=78.38 E-value=7.3 Score=42.59 Aligned_cols=41 Identities=10% Similarity=0.045 Sum_probs=24.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhc-CCCCCeEEEEEcC
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQH-VPQGGVRALILSP 101 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~-~~~~g~r~LIL~P 101 (786)
.-+++.|++|||||......++..+... ....+..++|+.-
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 4588999999999976543333322211 0012456777764
No 242
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=78.32 E-value=3.2 Score=47.11 Aligned_cols=59 Identities=7% Similarity=0.079 Sum_probs=55.0
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEec
Q 003924 266 DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (786)
Q Consensus 266 ~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTd 324 (786)
.+.+||.++++.-+......|...++.+..+||+.+...+..++..+..+..+||++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 46899999999999999999999999999999999999988889999999999999995
No 243
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=78.25 E-value=35 Score=39.68 Aligned_cols=77 Identities=21% Similarity=0.181 Sum_probs=59.1
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCCc
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~~ 168 (786)
+.++||.|+|+..+..+.+.+... ++.+..++|+.+..+....+ .+..+|+|||. .+. ..+++..
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l~--~GlDip~ 507 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LLR--EGLDIPE 507 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CCC--TTCCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hhh--cCccCCC
Confidence 668999999999999999888876 47888888877655544332 35689999993 223 3788999
Q ss_pred eeeEEeCCcccc
Q 003924 169 VEYVVFDEADCL 180 (786)
Q Consensus 169 l~~vV~DEah~l 180 (786)
+.+||+=+++..
T Consensus 508 v~lVI~~d~d~~ 519 (664)
T 1c4o_A 508 VSLVAILDADKE 519 (664)
T ss_dssp EEEEEETTTTSC
T ss_pred CCEEEEeCCccc
Confidence 999998888764
No 244
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=77.96 E-value=6 Score=43.46 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=53.9
Q ss_pred EEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCCcee
Q 003924 95 RALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKSVE 170 (786)
Q Consensus 95 r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~ 170 (786)
++||.|+++.-+..+++.+... ++.+..++|+.+..+....+ .+...|+|||. .+. ..+++.++.
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v~~--rGlDi~~v~ 370 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----VAS--RGLDIKNIK 370 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----GGT--SSCCCTTCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----hhh--CCCCcccCC
Confidence 3999999999999999888775 47889999988766554433 35789999995 333 378899999
Q ss_pred eEEe
Q 003924 171 YVVF 174 (786)
Q Consensus 171 ~vV~ 174 (786)
+||.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8886
No 245
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=77.74 E-value=4.2 Score=46.88 Aligned_cols=59 Identities=14% Similarity=0.182 Sum_probs=53.9
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHH--hcCCcEEEEEec
Q 003924 266 DQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRF--RARKTMFLIVTD 324 (786)
Q Consensus 266 ~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F--~~g~~~ILVaTd 324 (786)
.+.+||.++++.-+......|...|+.+..++|+++..++..++..+ ..+..+|||+|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 56899999999999999999999999999999999999988888888 568899999997
No 246
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=77.57 E-value=5.6 Score=42.62 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=55.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCCc
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~~ 168 (786)
+.++||.|+++.-+..+++.+...+ +.+..++|+.+..+....+ .+...|+|+|. .+. ..+++..
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~~----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~~--~Gidip~ 326 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDLG----YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LLT--RGIDIQA 326 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHHT----CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CSS--SSCCCTT
T ss_pred CCcEEEEEecHHHHHHHHHHHHhcC----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----ccc--cCCCccC
Confidence 4589999999999999999888764 7788899988766544332 35678999994 222 3688889
Q ss_pred eeeEEeCC
Q 003924 169 VEYVVFDE 176 (786)
Q Consensus 169 l~~vV~DE 176 (786)
+.+||.-.
T Consensus 327 ~~~Vi~~~ 334 (400)
T 1s2m_A 327 VNVVINFD 334 (400)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99888643
No 247
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=77.37 E-value=2 Score=47.27 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=32.7
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLAL 107 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~ 107 (786)
...++++.|+||||||..+ .+++..+.. .+..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~----~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL----RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH----TTCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH----CCCcEEEEeCCCchhH
Confidence 4578999999999999864 445555544 2567888889888853
No 248
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=76.37 E-value=7.8 Score=41.64 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=55.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCCc
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~~ 168 (786)
..++||.|+++.-+..+++.+... ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++.+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~~--~Gidi~~ 344 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VWA--RGLDVPQ 344 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GGS--SSCCCTT
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hhh--CcCCccc
Confidence 347999999999999998888775 47888899988766544333 35788999995 233 3788999
Q ss_pred eeeEEeCC
Q 003924 169 VEYVVFDE 176 (786)
Q Consensus 169 l~~vV~DE 176 (786)
+.+||.-.
T Consensus 345 v~~Vi~~~ 352 (410)
T 2j0s_A 345 VSLIINYD 352 (410)
T ss_dssp EEEEEESS
T ss_pred CCEEEEEC
Confidence 99988633
No 249
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=76.32 E-value=6.5 Score=51.44 Aligned_cols=117 Identities=22% Similarity=0.322 Sum_probs=64.9
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCC-CeEEEEEcCCChhHHH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTD-LRISLLVGGDSMESQF 137 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~-l~v~~l~gg~~~~~~~ 137 (786)
.+..+++.+++|+|||...+..+.+.+.. |.+++|+.-. ++..+++ ...++...+ +. +..
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~-----Ge~~~Fit~e-e~~~~L~--a~~~G~dl~~l~---~~~-------- 1140 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFIDAE-HALDPIY--ARKLGVDIDNLL---CSQ-------- 1140 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT-----TCCEEEECTT-SCCCHHH--HHHTTCCTTTCE---EEC--------
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc-----CCeEEEEEcc-ccHHHHH--HHHcCCChhHhe---eec--------
Confidence 45789999999999998776656555433 5667777633 3334433 334442221 11 111
Q ss_pred HHHcCCCCEEEECcH---HHHHHHhhccCCCCCceeeEEeCCcccccc-------C-----C-----hHHHHHHHHhhcc
Q 003924 138 EELAQNPDIIIATPG---RLMHHLSEVEDMSLKSVEYVVFDEADCLFG-------M-----G-----FAEQLHKILGQLS 197 (786)
Q Consensus 138 ~~l~~~~dIiV~Tpg---rll~~l~~~~~l~l~~l~~vV~DEah~l~~-------~-----g-----f~~~l~~Il~~l~ 197 (786)
|+ +-+ ++...+.+ ...+++|||||...+.. | | +...+..+...+.
T Consensus 1141 ------pd----~~e~~~~i~~~l~~-----~~~~dlvVIDsl~~L~~~~e~~~~~g~~~~gl~aR~~~~~L~~L~~~l~ 1205 (2050)
T 3cmu_A 1141 ------PD----TGEQALEICDALAR-----SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 1205 (2050)
T ss_dssp ------CS----SHHHHHHHHHHHHH-----HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ------Cc----chHHHHHHHHHHHH-----hCCCCEEEECCcccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence 11 111 22222222 34678999999887631 1 2 2234555666665
Q ss_pred cCCceEEEeccC
Q 003924 198 ENRQTLLFSATL 209 (786)
Q Consensus 198 ~~~q~ll~SATl 209 (786)
...-++++|...
T Consensus 1206 e~~stiI~tN~~ 1217 (2050)
T 3cmu_A 1206 QSNTLLIFINQI 1217 (2050)
T ss_dssp TTTCEEEEEECC
T ss_pred hCCeEEEEecCC
Confidence 566677776554
No 250
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=76.26 E-value=4.7 Score=47.88 Aligned_cols=142 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHc
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA 141 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~ 141 (786)
.+++.||||+|||..+- .+.......+..+..+..+.-.+.....
T Consensus 523 ~~Ll~Gp~GtGKT~lA~---------------------------------ala~~l~~~~~~~i~i~~s~~~~~~~~~-- 567 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR---------------------------------ALAESIFGDEESMIRIDMSEYMEKHSTS-- 567 (758)
T ss_dssp EEEEESCTTSSHHHHHH---------------------------------HHHHHHHSCTTCEEEEEGGGGCSSCCCC--
T ss_pred EEEEECCCCCCHHHHHH---------------------------------HHHHHhcCCCcceEEEechhcccccccc--
Q ss_pred CCCCEEEECcHHHHHHHhhccCCCCCceeeEEeCCccccccCChHHHHHHHHhh-----------cccCCceEEEeccCc
Q 003924 142 QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ-----------LSENRQTLLFSATLP 210 (786)
Q Consensus 142 ~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~-----------l~~~~q~ll~SATl~ 210 (786)
.+.+...+.. ...++|+|||+|.+ .......+..++.. .+.+..+|+.|...+
T Consensus 568 ---------~~~l~~~~~~------~~~~vl~lDEi~~~-~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 568 ---------GGQLTEKVRR------KPYSVVLLDAIEKA-HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp ------------CHHHHHH------CSSSEEEEECGGGS-CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred ---------cchhhHHHHh------CCCeEEEEeCcccc-CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Q ss_pred ---HHHHHHHHhcCCCCcceeeccccccCCCceeeeeecchHHHHHHHHHHHHHh
Q 003924 211 ---SALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLRQEEKHAALLYMIREH 262 (786)
Q Consensus 211 ---~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~~~~k~~~Ll~lL~~~ 262 (786)
..+.......+....+.+++ ....|.....++....+...+...
T Consensus 632 ~~~~~~~~~~~~~f~p~l~~Rl~--------~~i~~~~l~~~~~~~i~~~~l~~~ 678 (758)
T 3pxi_A 632 SEKDKVMGELKRAFRPEFINRID--------EIIVFHSLEKKHLTEIVSLMSDQL 678 (758)
T ss_dssp TCCHHHHHHHHHHSCHHHHTTSS--------EEEECC--CHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhCCHHHHhhCC--------eEEecCCCCHHHHHHHHHHHHHHH
No 251
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=75.62 E-value=7.6 Score=37.32 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=41.4
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHc-----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEec
Q 003924 266 DQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (786)
Q Consensus 266 ~~k~IVF~~t~~~ae~l~~~L~~~-----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTd 324 (786)
+.++||.++|+.-+..++..+... +..+..++|+.+....... + .+..+|+|+|.
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~i~v~T~ 130 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---L-DDTVHVVIATP 130 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---T-TSCCSEEEECH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---c-CCCCCEEEeCH
Confidence 457999999999999888877653 5678889998876543322 2 35678999995
No 252
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=75.28 E-value=3 Score=46.16 Aligned_cols=69 Identities=19% Similarity=0.160 Sum_probs=48.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH-cCCCCEEEECcHHHHHHHhhccCCCCCceee
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l-~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~ 171 (786)
+.++||+||+++-+..+++.+... ++.+..++|... ...+..+ .+..+|+|||. .+. ..+++. +.+
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R-~~~~~~F~~g~~~vLVaT~-----v~e--~GiDip-v~~ 243 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTF-EREYPTIKQKKPDFILATD-----IAE--MGANLC-VER 243 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSC-C--------CCCSEEEESS-----STT--CCTTCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhH-HHHHhhhcCCCceEEEECC-----hhh--eeeccC-ceE
Confidence 567999999999999999988875 478888888443 3333333 35789999994 233 267788 888
Q ss_pred EEe
Q 003924 172 VVF 174 (786)
Q Consensus 172 vV~ 174 (786)
||.
T Consensus 244 VI~ 246 (440)
T 1yks_A 244 VLD 246 (440)
T ss_dssp EEE
T ss_pred EEe
Confidence 773
No 253
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=75.18 E-value=3.2 Score=46.87 Aligned_cols=50 Identities=16% Similarity=0.085 Sum_probs=29.5
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHHc------CCcEEEEcCCCChHHHHH
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLILS------GADVVAMARTGSGKTAAF 77 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il~------g~dvvl~a~TGSGKT~af 77 (786)
..-+|+++.-.......|...-. ...-|.++. .+.+++.||+|+|||+.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~-------~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVE-------FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHH-------HHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHcCCcHHHHHHHHHHHH-------HhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 35678888766666666653210 000011111 245999999999999754
No 254
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=74.07 E-value=2.8 Score=46.50 Aligned_cols=42 Identities=24% Similarity=0.196 Sum_probs=24.4
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc--CcHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS--PTRDLAL 107 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~--PtreLa~ 107 (786)
-+++.|++|+|||.+..-.+. .+... .|.+++++. |.+..+.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~-~l~~~---~G~kVllvd~D~~r~~a~ 145 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGK-FLREK---HKKKVLVVSADVYRPAAI 145 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HHHHT---SCCCEEEEECCCSSTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHh---cCCeEEEEecCCCCccHH
Confidence 466789999999986543332 33321 155666655 4444333
No 255
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=73.96 E-value=6.3 Score=50.80 Aligned_cols=119 Identities=18% Similarity=0.299 Sum_probs=68.0
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL 140 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l 140 (786)
+-+.+.+|.|||||...+-.+.+... .|..++++.+..+|.... ++.++ .++.
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~-----~g~~~~~i~~e~~~~~~~---~~~~G--v~~~----------------- 1484 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQR-----EGKTCAFIDAEHALDPIY---ARKLG--VDID----------------- 1484 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH-----TTCCEEEECTTSCCCHHH---HHHTT--CCGG-----------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh-----cCCeEEEEecCCCCCHHH---HHHcC--CCHH-----------------
Confidence 56899999999999876655444333 366789999887775553 44554 1121
Q ss_pred cCCCCEEEECcHH---HHHHHhhccCCCCCceeeEEeCCcccccc-------C-----Ch-----HHHHHHHHhhcccCC
Q 003924 141 AQNPDIIIATPGR---LMHHLSEVEDMSLKSVEYVVFDEADCLFG-------M-----GF-----AEQLHKILGQLSENR 200 (786)
Q Consensus 141 ~~~~dIiV~Tpgr---ll~~l~~~~~l~l~~l~~vV~DEah~l~~-------~-----gf-----~~~l~~Il~~l~~~~ 200 (786)
+++|.-|+. .+..+.. .+.-..+++||||...-+.. | |. ...|..+...+....
T Consensus 1485 ----~l~~~~p~~~e~~l~~~~~--~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ar~m~~~lr~l~~~~~~~~ 1558 (1706)
T 3cmw_A 1485 ----NLLCSQPDTGEQALEICDA--LARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN 1558 (1706)
T ss_dssp ----GCEEECCSSHHHHHHHHHH--HHHHTCCSEEEESCSTTCCCTTTTC-------CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ----HeEEeCCCcHHHHHHHHHH--HHHcCCCCEEEEccHHhCCccccccccccccchhHHHHHHHHHHHHHHHHHHhCC
Confidence 145555532 2222221 12234578999999887653 2 22 222444444555555
Q ss_pred ceEEEeccCcHH
Q 003924 201 QTLLFSATLPSA 212 (786)
Q Consensus 201 q~ll~SATl~~~ 212 (786)
-+++|...+...
T Consensus 1559 ~~~i~~~~~~~~ 1570 (1706)
T 3cmw_A 1559 TLLIFINQIRMK 1570 (1706)
T ss_dssp CEEEEEECBC--
T ss_pred cEEEEeeccccc
Confidence 566777665443
No 256
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=73.55 E-value=18 Score=40.66 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=22.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcC
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSP 101 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~P 101 (786)
.++++|++|+|||..+.-.+ ..+.. .|.+++++..
T Consensus 103 vI~ivG~~GvGKTTl~~kLA-~~l~~----~G~kVllVd~ 137 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLA-YYYQR----KGWKTCLICA 137 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHH-HHHHH----TTCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH-HHHHh----CCCeEEEEec
Confidence 37789999999997654332 23332 2556666664
No 257
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=73.25 E-value=8.8 Score=40.84 Aligned_cols=43 Identities=14% Similarity=0.047 Sum_probs=25.5
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcC-CCCCeEEEEEcCcH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHV-PQGGVRALILSPTR 103 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~-~~~g~r~LIL~Ptr 103 (786)
.-+++.|++|||||...+..+........ ...+.+++|+.-..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 34889999999999765543333221100 00245788887543
No 258
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=72.50 E-value=9.7 Score=45.60 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q 003924 60 GADVVAMARTGSGKTAAF 77 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~af 77 (786)
+..+++.||+|+|||+.+
T Consensus 238 ~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEECSCTTSSHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999753
No 259
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=71.84 E-value=11 Score=42.31 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-+.++|++|||||..+
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 3778999999999853
No 260
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=71.74 E-value=13 Score=38.71 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
-+++.+++|+|||....
T Consensus 100 vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp EEEEECSSCSSTTHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46778999999997544
No 261
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=71.50 E-value=7.2 Score=43.61 Aligned_cols=95 Identities=20% Similarity=0.270 Sum_probs=55.7
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEc--------CCChhHHHH---
Q 003924 70 GSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG--------GDSMESQFE--- 138 (786)
Q Consensus 70 GSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~g--------g~~~~~~~~--- 138 (786)
.++|..... -++..+... ..+.++||.|+++..+..+.+.+...+...++.+..++| +.+..+...
T Consensus 369 ~~~k~~~l~-~~l~~~~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~ 445 (555)
T 3tbk_A 369 ENPKLRDLY-LVLQEEYHL--KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLE 445 (555)
T ss_dssp CCHHHHHHH-HHHHHHHHH--CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------
T ss_pred CCHHHHHHH-HHHHHHhcc--CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHH
Confidence 356665433 333333221 135689999999999999999998876544556666555 444333322
Q ss_pred HHc--CCCCEEEECcHHHHHHHhhccCCCCCceeeEEe
Q 003924 139 ELA--QNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVF 174 (786)
Q Consensus 139 ~l~--~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~ 174 (786)
.+. +..+|+|||. .+. ..+++..+++||.
T Consensus 446 ~F~~~g~~~vLvaT~-----~~~--~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 446 AFRASGDNNILIATS-----VAD--EGIDIAECNLVIL 476 (555)
T ss_dssp ------CCSEEEECC-----CTT--CCEETTSCSEEEE
T ss_pred HHhcCCCeeEEEEcc-----hhh--cCCccccCCEEEE
Confidence 222 4578999994 222 3688888888876
No 262
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=73.55 E-value=0.86 Score=43.29 Aligned_cols=73 Identities=14% Similarity=0.220 Sum_probs=51.3
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCCc
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKS 168 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~~ 168 (786)
+.++||.|+++..+..+++.+... ++.+..++|+.+..+....+ .+...|+|+|. .+. ..+++..
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~--~Gid~~~ 98 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATD-----VAA--RGIDIPD 98 (170)
Confidence 457999999999999988887765 47788888886655443332 24677999993 222 2677777
Q ss_pred eeeEEeCC
Q 003924 169 VEYVVFDE 176 (786)
Q Consensus 169 l~~vV~DE 176 (786)
+.+||.-+
T Consensus 99 ~~~Vi~~~ 106 (170)
T 2yjt_D 99 VSHVFNFD 106 (170)
Confidence 87777643
No 263
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=70.62 E-value=13 Score=37.65 Aligned_cols=71 Identities=13% Similarity=0.097 Sum_probs=49.7
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc-----cc--cccCCC
Q 003924 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AA--RGIDIP 333 (786)
Q Consensus 265 ~~~k~IVF~~t~~~ae~l~~~L~~~----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv-----~a--rGlDIp 333 (786)
.+.++||.++|+.-+..++..+... +..+..++|+......... +..+ .+|+|+|+- +. .++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 4678999999999999888887763 5677888898876654433 3334 889999941 21 235666
Q ss_pred CcceeE
Q 003924 334 LLDNVI 339 (786)
Q Consensus 334 ~v~~VI 339 (786)
.+++||
T Consensus 201 ~l~~lV 206 (262)
T 3ly5_A 201 NLQCLV 206 (262)
T ss_dssp TCCEEE
T ss_pred cCCEEE
Confidence 666666
No 264
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=70.17 E-value=7 Score=38.20 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=47.5
Q ss_pred HHHHH-HHHHHHHhc--cCCCcEEEEEcchhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEE
Q 003924 250 EKHAA-LLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIV 322 (786)
Q Consensus 250 ~k~~~-Ll~lL~~~~--~~~~k~IVF~~t~~~ae~l~~~L~~~----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVa 322 (786)
.|... ++.++.... ..+.++||.++|+.-+..++..+... ++.+..++|+.+....... + ...+|+|+
T Consensus 63 GKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~--~~~~iiv~ 137 (224)
T 1qde_A 63 GKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---L--RDAQIVVG 137 (224)
T ss_dssp SHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C--TTCSEEEE
T ss_pred cHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---C--CCCCEEEE
Confidence 44433 444444332 23568999999999999888877653 6778888988765443322 2 23789999
Q ss_pred eccc------ccccCCCCcceeE
Q 003924 323 TDVA------ARGIDIPLLDNVI 339 (786)
Q Consensus 323 Tdv~------arGlDIp~v~~VI 339 (786)
|.-. ...+++..+++||
T Consensus 138 Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 138 TPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp CHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CHHHHHHHHHhCCcchhhCcEEE
Confidence 8531 1233444555555
No 265
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=69.53 E-value=9.7 Score=40.68 Aligned_cols=22 Identities=23% Similarity=0.569 Sum_probs=17.5
Q ss_pred CccCC-CCCHHHHHHHHHCCCCC
Q 003924 24 GFESL-NLSPNVFRAIKRKGYKV 45 (786)
Q Consensus 24 ~f~~l-gLs~~ll~~l~~~g~~~ 45 (786)
..+.| |+++..++.|...||.+
T Consensus 36 ~l~~l~Gi~~~~~~kL~~ag~~t 58 (349)
T 1pzn_A 36 SIEDLPGVGPATAEKLREAGYDT 58 (349)
T ss_dssp CSSCCTTCCHHHHHHHHTTTCCS
T ss_pred cHHHcCCCCHHHHHHHHHcCCCc
Confidence 34555 59999999999999983
No 266
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=68.82 E-value=20 Score=42.70 Aligned_cols=75 Identities=15% Similarity=0.122 Sum_probs=56.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHH-------ccCCCCeEEEEEcCCChhHHHHHHc---------CCCCEEEECcHHHHH
Q 003924 93 GVRALILSPTRDLALQTLKFTKEL-------GRYTDLRISLLVGGDSMESQFEELA---------QNPDIIIATPGRLMH 156 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l-------~~~~~l~v~~l~gg~~~~~~~~~l~---------~~~dIiV~Tpgrll~ 156 (786)
+..+||.+|++.-+..+++.+... ....++.+..++|+.+..++...+. +...|||||.-
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i---- 378 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI---- 378 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH----
Confidence 568999999999999999888752 2235788999999998877765543 24579999952
Q ss_pred HHhhccCCCCCceeeEEe
Q 003924 157 HLSEVEDMSLKSVEYVVF 174 (786)
Q Consensus 157 ~l~~~~~l~l~~l~~vV~ 174 (786)
+.. .+++..+.+||-
T Consensus 379 -ae~--GidIp~v~~VId 393 (773)
T 2xau_A 379 -AET--SLTIDGIVYVVD 393 (773)
T ss_dssp -HHH--TCCCTTEEEEEE
T ss_pred -HHh--CcCcCCeEEEEe
Confidence 232 688889987774
No 267
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=68.07 E-value=7.5 Score=42.78 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=47.2
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH-cCCCCEEEECcHHHHHHHhhccCCCCCceee
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l-~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~ 171 (786)
+.++||+||+++-+..+++.+... ++.+..++|+.. ...+..+ .+..+|+|||. .+.. .+++. +..
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r-~~~~~~f~~g~~~vLVaT~-----v~e~--GiDip-~~~ 237 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTF-ESEYPKCKSEKWDFVITTD-----ISEM--GANFK-ADR 237 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTH-HHHTTHHHHSCCSEEEECG-----GGGT--SCCCC-CSE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccH-HHHHHhhcCCCCeEEEECc-----hHHc--CcccC-CcE
Confidence 447999999999999999988876 578888888632 2222222 46789999994 3332 56665 444
Q ss_pred E
Q 003924 172 V 172 (786)
Q Consensus 172 v 172 (786)
|
T Consensus 238 V 238 (431)
T 2v6i_A 238 V 238 (431)
T ss_dssp E
T ss_pred E
Confidence 4
No 268
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=67.78 E-value=34 Score=37.92 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=51.9
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH----cCCCCEEEECcHHHHHHHhhccCCCCCce
Q 003924 94 VRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL----AQNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (786)
Q Consensus 94 ~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l----~~~~dIiV~Tpgrll~~l~~~~~l~l~~l 169 (786)
...+|++.+..-+..+.+.+...+ ..+..++|+.+..+....+ .+..+|+|||+..+- ..+++.++
T Consensus 348 ~~~~ivf~~~~~~~~l~~~L~~~~----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~------~GiDip~v 417 (510)
T 2oca_A 348 ENAFVMFKHVSHGKAIFDLIKNEY----DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFS------TGISVKNL 417 (510)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTC----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHH------HSCCCCSE
T ss_pred CCeEEEEecHHHHHHHHHHHHHcC----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhh------cccccccC
Confidence 344455555666666666666543 4788888887765533322 457789999977664 37889999
Q ss_pred eeEEeCCccc
Q 003924 170 EYVVFDEADC 179 (786)
Q Consensus 170 ~~vV~DEah~ 179 (786)
.+||+..+..
T Consensus 418 ~~vi~~~~~~ 427 (510)
T 2oca_A 418 HHVVLAHGVK 427 (510)
T ss_dssp EEEEESSCCC
T ss_pred cEEEEeCCCC
Confidence 9999988773
No 269
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=66.33 E-value=18 Score=36.08 Aligned_cols=70 Identities=17% Similarity=0.193 Sum_probs=47.6
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc-cc-----cccCCCCc
Q 003924 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-AA-----RGIDIPLL 335 (786)
Q Consensus 266 ~~k~IVF~~t~~~ae~l~~~L~~~----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv-~a-----rGlDIp~v 335 (786)
+.++||.|+|+.-+..++..+... ++.+..++|+.+.......+ ....+|+|+|.- +. ..+++..+
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 358999999999999888777653 56778888887765433222 346789999953 21 12455566
Q ss_pred ceeE
Q 003924 336 DNVI 339 (786)
Q Consensus 336 ~~VI 339 (786)
++||
T Consensus 176 ~~lV 179 (253)
T 1wrb_A 176 KYIV 179 (253)
T ss_dssp CEEE
T ss_pred CEEE
Confidence 6665
No 270
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=65.88 E-value=75 Score=29.82 Aligned_cols=115 Identities=16% Similarity=0.157 Sum_probs=67.4
Q ss_pred cHHHHHHHHhcCCCCcceeeccccccCCCceeeeeecc-hHHHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHH
Q 003924 210 PSALAEFAKAGLRDPHLVRLDVDTKISPDLKLAFFTLR-QEEKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE 288 (786)
Q Consensus 210 ~~~l~~~~~~~l~~p~~i~~~~~~~~~~~l~~~~~~v~-~~~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~ 288 (786)
+..+..++...+.+...+... ........+..+. ..+-...+...+.......+.+.|.|.+..++..+...|..
T Consensus 8 t~~Il~~An~li~~~~~~~~~----~~~G~~p~~~~~~~~~~e~~~i~~~I~~~~~g~~~iAVL~r~~~~~~~l~~~L~~ 83 (174)
T 3dmn_A 8 TQQITDFTKEILVNGEAVTAF----DRQGDLPNVVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKA 83 (174)
T ss_dssp CHHHHHHHHTTSCC------------CCCCCCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhcCCCcccCC----CCCCCCCEEEEeCCHHHHHHHHHHHHHHhccCCCcEEEEecCHHHHHHHHHHHHH
Confidence 356666777666433211111 1111222333332 23334445555544212356789999999999999999999
Q ss_pred cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecccccccCCCCcceeEecCC
Q 003924 289 EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGIDIPLLDNVINWDF 343 (786)
Q Consensus 289 ~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGlDIp~v~~VI~~d~ 343 (786)
.|+.+..+.++-. ...-.|.|+|--.+.|+-+ +.||.+++
T Consensus 84 ~gi~~~~l~~~~~------------~~~~~v~v~t~~~~KGlEf---~~V~~~~~ 123 (174)
T 3dmn_A 84 RGEQVTLIQTENQ------------RLAPGVIVVPSFLAKGLEF---DAVIVWNA 123 (174)
T ss_dssp TTCCEEECSSCC-------------CCCSSEEEEEGGGCTTCCE---EEEEEETC
T ss_pred cCCcceeeccccc------------ccCCCeEEEEccccCCcCC---CEEEEecC
Confidence 9988877765431 1124699999999999997 45555553
No 271
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=65.36 E-value=8.1 Score=49.80 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
|..+++.|++|||||...+..+++.+.. |.+++|+.-.
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~-----G~~vlYI~te 71 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQRE-----GKTCAFIDAE 71 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-----TCCEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhC-----CCceEEEEec
Confidence 5679999999999998766555554432 5568888744
No 272
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=65.36 E-value=7.1 Score=45.76 Aligned_cols=68 Identities=10% Similarity=0.140 Sum_probs=48.7
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH-cCCCCEEEECcHHHHHHHhhccCCCCCceee
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l-~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~ 171 (786)
+.++||+||+++-+..+++.+... ++.+..++|. .....+..+ .+..+|+|||. .+.. .+++. +.+
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e~--GIDip-v~~ 476 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISEM--GANFG-ASR 476 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGGT--TCCCC-CSE
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhhc--ceeeC-CcE
Confidence 567999999999999988887765 5888888884 333333333 35789999994 2332 67777 777
Q ss_pred EE
Q 003924 172 VV 173 (786)
Q Consensus 172 vV 173 (786)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 273
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=65.36 E-value=11 Score=38.63 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afl 78 (786)
...+++.||+|+|||...-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 274
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=64.78 E-value=7.6 Score=43.90 Aligned_cols=40 Identities=23% Similarity=0.128 Sum_probs=26.2
Q ss_pred HHHHHHCCCCCChHHHHHHHHH-HHcCCcEEEEcCCCChHHHH
Q 003924 35 FRAIKRKGYKVPTPIQRKTMPL-ILSGADVVAMARTGSGKTAA 76 (786)
Q Consensus 35 l~~l~~~g~~~ptpiQ~~aip~-il~g~dvvl~a~TGSGKT~a 76 (786)
+..|...|. +++.+..-+.. +-.|..+++.||||||||..
T Consensus 236 ~~~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 236 PIDLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred hhhHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 344555663 33444444443 34677899999999999974
No 275
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=64.76 E-value=4.5 Score=43.63 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=19.9
Q ss_pred HHHHHHcCCc--EEEEcCCCChHHHHHH
Q 003924 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (786)
Q Consensus 53 aip~il~g~d--vvl~a~TGSGKT~afl 78 (786)
.+..++.|.+ ++..|+||||||.+..
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 3455677876 7789999999998743
No 276
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=64.38 E-value=8.7 Score=47.49 Aligned_cols=82 Identities=12% Similarity=0.086 Sum_probs=59.5
Q ss_pred HHHHHhccCCCcEEEEEcchhhHHHHHHHHHHc----CC----CceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc-cc
Q 003924 257 YMIREHISSDQQTLIFVSTKHHVEFLNVLFREE----GL----EPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-AA 327 (786)
Q Consensus 257 ~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~----g~----~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv-~a 327 (786)
-.+......+.++||.++|+.-+..++..+... ++ .+..+||+.+...+...+..+.. .+|+|+|+- +.
T Consensus 90 p~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~ 167 (1054)
T 1gku_B 90 AMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLS 167 (1054)
T ss_dssp HHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHH
T ss_pred HHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHH
Confidence 333333446789999999999998888777653 56 78899999999888777777766 899999962 22
Q ss_pred cccC-CCCcceeEe
Q 003924 328 RGID-IPLLDNVIN 340 (786)
Q Consensus 328 rGlD-Ip~v~~VI~ 340 (786)
.-+. +..+++||.
T Consensus 168 ~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 168 KHYRELGHFDFIFV 181 (1054)
T ss_dssp HCSTTSCCCSEEEE
T ss_pred HHHHHhccCCEEEE
Confidence 2222 556777773
No 277
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=64.31 E-value=6.3 Score=38.88 Aligned_cols=35 Identities=26% Similarity=0.194 Sum_probs=28.2
Q ss_pred CCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHH
Q 003924 43 YKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 43 ~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~af 77 (786)
+..-+.-|..++..+..|.-+.+.||.|||||..+
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 44445667788888888999999999999999743
No 278
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=64.21 E-value=12 Score=38.46 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=32.9
Q ss_pred CHHHHHHHHHCCCCCChHHHH-HHHHHHHcCC-----cEEEEcCCCChHHHHHH
Q 003924 31 SPNVFRAIKRKGYKVPTPIQR-KTMPLILSGA-----DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 31 s~~ll~~l~~~g~~~ptpiQ~-~aip~il~g~-----dvvl~a~TGSGKT~afl 78 (786)
-.++++-|.-.||. |++- .++..++.++ .+++.||+|+|||+.+.
T Consensus 72 ~n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 72 SNRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GCHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 34688888888885 5553 3355666664 49999999999998655
No 279
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=63.36 E-value=4 Score=40.73 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=45.0
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc-----ccc---ccCC
Q 003924 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-----AAR---GIDI 332 (786)
Q Consensus 265 ~~~k~IVF~~t~~~ae~l~~~L~~~----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv-----~ar---GlDI 332 (786)
.+.++||.++|+.-+..++..+... ++.+..++|+..... .......+..+|+|+|+- +.. .+++
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~ 173 (245)
T 3dkp_A 97 KGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAK---KFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDL 173 (245)
T ss_dssp SSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHT---TTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHH---HhhhhhcCCCCEEEECHHHHHHHHHhCCCCccc
Confidence 4557999999999999998888765 566666665422111 111223456789999942 112 3566
Q ss_pred CCcceeE
Q 003924 333 PLLDNVI 339 (786)
Q Consensus 333 p~v~~VI 339 (786)
..+++||
T Consensus 174 ~~~~~lV 180 (245)
T 3dkp_A 174 ASVEWLV 180 (245)
T ss_dssp TTCCEEE
T ss_pred ccCcEEE
Confidence 6666666
No 280
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=62.66 E-value=5.3 Score=42.43 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=19.2
Q ss_pred HHHHHcCCc--EEEEcCCCChHHHHHH
Q 003924 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (786)
Q Consensus 54 ip~il~g~d--vvl~a~TGSGKT~afl 78 (786)
+..++.|.+ ++..|+||||||.+..
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 70 VKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHhCCCeEEEEEECCCCCCCceEec
Confidence 344567876 7789999999998743
No 281
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=62.34 E-value=9.4 Score=43.02 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=27.3
Q ss_pred CCCCCChHHHHHHHHHHHcCCcEEEEcCCCChHHHHH
Q 003924 41 KGYKVPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 41 ~g~~~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~af 77 (786)
..+.--...-..++-.+..+.++++.||+|+|||..+
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 3444444555556666778899999999999999753
No 282
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=61.96 E-value=4.1 Score=38.80 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=16.5
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q 003924 58 LSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 58 l~g~dvvl~a~TGSGKT~af 77 (786)
+.|+-+++.||+|||||...
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677999999999999843
No 283
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=61.93 E-value=5.3 Score=43.77 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=19.2
Q ss_pred HHHHHcCCc--EEEEcCCCChHHHHHH
Q 003924 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (786)
Q Consensus 54 ip~il~g~d--vvl~a~TGSGKT~afl 78 (786)
+..++.|.+ ++..|+||||||.+..
T Consensus 147 V~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 147 VQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp HHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred HHHHhcCCceeEEeecCCCCCCCeEee
Confidence 344567876 7779999999998754
No 284
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=61.73 E-value=5.3 Score=42.78 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=18.1
Q ss_pred HHHHcCCc--EEEEcCCCChHHHHH
Q 003924 55 PLILSGAD--VVAMARTGSGKTAAF 77 (786)
Q Consensus 55 p~il~g~d--vvl~a~TGSGKT~af 77 (786)
..++.|.+ ++..|+||||||.+.
T Consensus 88 ~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 88 DKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hHhhCCCceEEEEecCCCCCCCeEE
Confidence 44567876 678999999999874
No 285
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=61.38 E-value=5.3 Score=43.78 Aligned_cols=26 Identities=38% Similarity=0.542 Sum_probs=20.5
Q ss_pred HHHHHHcCCc--EEEEcCCCChHHHHHH
Q 003924 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (786)
Q Consensus 53 aip~il~g~d--vvl~a~TGSGKT~afl 78 (786)
.+..++.|.+ ++..|+||||||.+.+
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 4566678877 6779999999998754
No 286
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=61.31 E-value=9.2 Score=43.19 Aligned_cols=42 Identities=21% Similarity=0.352 Sum_probs=26.0
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
+.++++.|.||||||.+.-..+...+... .....+.+++=|.
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~-~p~~v~l~liDpK 208 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSMLYKA-QPEDVRFIMIDPK 208 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHHTTC-CTTTEEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhC-CCceEEEEEECCc
Confidence 45799999999999986544444444333 2234555555454
No 287
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=61.29 E-value=5.1 Score=42.99 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=18.8
Q ss_pred HHHHHcCCc--EEEEcCCCChHHHHH
Q 003924 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (786)
Q Consensus 54 ip~il~g~d--vvl~a~TGSGKT~af 77 (786)
+..++.|.+ ++..|+||||||.+.
T Consensus 70 v~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 70 IDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHcCCccceeeecCCCCCCCeEE
Confidence 345567876 677999999999874
No 288
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=61.10 E-value=5.1 Score=43.08 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=19.3
Q ss_pred HHHHHHcCCc--EEEEcCCCChHHHHH
Q 003924 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (786)
Q Consensus 53 aip~il~g~d--vvl~a~TGSGKT~af 77 (786)
.+..++.|.+ ++..|+||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 3445667876 677999999999874
No 289
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=60.74 E-value=5.9 Score=42.76 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=18.2
Q ss_pred HHHHcCCc--EEEEcCCCChHHHHH
Q 003924 55 PLILSGAD--VVAMARTGSGKTAAF 77 (786)
Q Consensus 55 p~il~g~d--vvl~a~TGSGKT~af 77 (786)
..++.|.+ ++..|+||||||.+.
T Consensus 78 ~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 78 TDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceEEEeecCCCCCCceEE
Confidence 34567876 678999999999874
No 290
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=60.55 E-value=10 Score=42.00 Aligned_cols=68 Identities=9% Similarity=0.140 Sum_probs=48.2
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH-cCCCCEEEECcHHHHHHHhhccCCCCCceee
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l-~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~ 171 (786)
+.++||.||++.-+..+++.+... ++.+..++|... ...+..+ .+..+|+|||. .+.. .+++.. .+
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~-----v~~~--GiDip~-~~ 254 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD-----ISEM--GANFRA-GR 254 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG-----GGGS--SCCCCC-SE
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEECC-----HHHh--CcCCCC-CE
Confidence 347999999999999988888764 577888877544 3333333 35789999994 3333 677777 66
Q ss_pred EE
Q 003924 172 VV 173 (786)
Q Consensus 172 vV 173 (786)
||
T Consensus 255 VI 256 (451)
T 2jlq_A 255 VI 256 (451)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 291
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=60.42 E-value=5.4 Score=43.07 Aligned_cols=24 Identities=25% Similarity=0.523 Sum_probs=18.7
Q ss_pred HHHHHcCCc--EEEEcCCCChHHHHH
Q 003924 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (786)
Q Consensus 54 ip~il~g~d--vvl~a~TGSGKT~af 77 (786)
+..++.|.+ ++..|+||||||.+.
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 345567876 677999999999864
No 292
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=60.37 E-value=4.1 Score=43.07 Aligned_cols=18 Identities=28% Similarity=0.243 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
+-++++||||||||....
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 457899999999998654
No 293
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=60.21 E-value=6 Score=42.80 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=18.6
Q ss_pred HHHHHcCCc--EEEEcCCCChHHHHH
Q 003924 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (786)
Q Consensus 54 ip~il~g~d--vvl~a~TGSGKT~af 77 (786)
+..++.|.+ ++..|+||||||.+.
T Consensus 94 v~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 94 VDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 344567876 677999999999874
No 294
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=60.19 E-value=6.2 Score=42.36 Aligned_cols=23 Identities=35% Similarity=0.586 Sum_probs=18.2
Q ss_pred HHHHcCCc--EEEEcCCCChHHHHH
Q 003924 55 PLILSGAD--VVAMARTGSGKTAAF 77 (786)
Q Consensus 55 p~il~g~d--vvl~a~TGSGKT~af 77 (786)
..++.|.+ ++..|+||||||.+.
T Consensus 83 ~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 83 DAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCCceeEEeecCCCCCCCEEe
Confidence 34567876 778999999999864
No 295
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=60.16 E-value=5.1 Score=43.14 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=19.0
Q ss_pred HHHHHcCCc--EEEEcCCCChHHHHHH
Q 003924 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (786)
Q Consensus 54 ip~il~g~d--vvl~a~TGSGKT~afl 78 (786)
+..++.|.+ ++..|+||||||.+..
T Consensus 81 v~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 81 LDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 344567876 6789999999998643
No 296
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=60.15 E-value=7.2 Score=43.08 Aligned_cols=34 Identities=18% Similarity=0.310 Sum_probs=21.3
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~ 100 (786)
.+++.|++|+|||....-.+. .+.. .|.+++++.
T Consensus 101 vI~ivG~~GvGKTTla~~La~-~l~~----~G~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLAR-YIQK----RGLKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHH-HHHH----HHCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHH----cCCeEEEEe
Confidence 588999999999976543332 2222 144566655
No 297
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=60.03 E-value=8.7 Score=44.76 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=46.2
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEc--------CCChhHHHHHH----c-CCCCEEEECcHHHHHHH
Q 003924 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVG--------GDSMESQFEEL----A-QNPDIIIATPGRLMHHL 158 (786)
Q Consensus 92 ~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~g--------g~~~~~~~~~l----~-~~~dIiV~Tpgrll~~l 158 (786)
.+.++||.|+++.-+..+++.+...+...++.+..++| +.+..++...+ . +...|+|+|. .+
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v~ 471 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----VA 471 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-----SS
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----hh
Confidence 45679999999999999999998876555577777765 55544443322 2 4678999994 22
Q ss_pred hhccCCCCCceeeEEeCCc
Q 003924 159 SEVEDMSLKSVEYVVFDEA 177 (786)
Q Consensus 159 ~~~~~l~l~~l~~vV~DEa 177 (786)
. ..+++.++.+||.-..
T Consensus 472 ~--~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 472 D--EGIDIAQCNLVILYEY 488 (696)
T ss_dssp C--CC---CCCSEEEEESC
T ss_pred h--cCCcCccCCEEEEeCC
Confidence 2 3688889998886433
No 298
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=60.03 E-value=6.2 Score=42.24 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=18.7
Q ss_pred HHHHHcCCc--EEEEcCCCChHHHHH
Q 003924 54 MPLILSGAD--VVAMARTGSGKTAAF 77 (786)
Q Consensus 54 ip~il~g~d--vvl~a~TGSGKT~af 77 (786)
+..++.|.+ ++..|+||||||.+.
T Consensus 76 v~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 76 LEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhhcCeeEEEecccCCCceEee
Confidence 344567876 678999999999874
No 299
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=60.01 E-value=26 Score=39.53 Aligned_cols=39 Identities=21% Similarity=0.196 Sum_probs=24.4
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
.|.-+++.|++|+|||......+- .+.. .|.+++++++.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g-~~~~----~G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVE-NACA----NKERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHH-HHHT----TTCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH-HHHh----CCCCEEEEEEe
Confidence 345688999999999975443222 2221 24457777754
No 300
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=59.87 E-value=6.2 Score=42.49 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=19.2
Q ss_pred HHHHHHcCCc--EEEEcCCCChHHHHH
Q 003924 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (786)
Q Consensus 53 aip~il~g~d--vvl~a~TGSGKT~af 77 (786)
.+..++.|.+ ++..|+||||||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3445567876 677899999999874
No 301
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=59.84 E-value=4.6 Score=43.10 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
+-++++||||||||...+
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 358999999999998644
No 302
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=59.76 E-value=6.4 Score=41.89 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=20.2
Q ss_pred HHHHHHcCCc--EEEEcCCCChHHHHH
Q 003924 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (786)
Q Consensus 53 aip~il~g~d--vvl~a~TGSGKT~af 77 (786)
.+..++.|.+ ++..|+||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4566778877 677999999999874
No 303
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=59.50 E-value=11 Score=39.28 Aligned_cols=81 Identities=14% Similarity=0.029 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcc--CCCcEEEEEcchhhHHHHHHHHHHc-----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc
Q 003924 253 AALLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE-----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (786)
Q Consensus 253 ~~Ll~lL~~~~~--~~~k~IVF~~t~~~ae~l~~~L~~~-----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv 325 (786)
..++.++..... .+.++||.++|+.-|..++..+... ++.+..++|+.+.... .....+|||+|+-
T Consensus 147 a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~ 219 (300)
T 3fmo_B 147 AFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPG 219 (300)
T ss_dssp HHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHH
T ss_pred HHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHH
Confidence 334555554432 2347999999999999988877764 4566677766543211 1345689999963
Q ss_pred cc-------cccCCCCcceeEe
Q 003924 326 AA-------RGIDIPLLDNVIN 340 (786)
Q Consensus 326 ~a-------rGlDIp~v~~VI~ 340 (786)
.- ..+++..+.+||.
T Consensus 220 ~l~~~l~~~~~~~l~~l~~lVl 241 (300)
T 3fmo_B 220 TVLDWCSKLKFIDPKKIKVFVL 241 (300)
T ss_dssp HHHHHHTTTCCCCGGGCSEEEE
T ss_pred HHHHHHHhcCCCChhhceEEEE
Confidence 21 3456667777763
No 304
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=59.40 E-value=13 Score=50.16 Aligned_cols=48 Identities=21% Similarity=0.275 Sum_probs=33.1
Q ss_pred CCHHHHHHHHHCCCCCChHHHH-HHH---HHHHcCCcEEEEcCCCChHHHHHH
Q 003924 30 LSPNVFRAIKRKGYKVPTPIQR-KTM---PLILSGADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 30 Ls~~ll~~l~~~g~~~ptpiQ~-~ai---p~il~g~dvvl~a~TGSGKT~afl 78 (786)
+...+.+.+.+.|+ ++++.+. +++ ..+.....|++.||||||||.++-
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 34456667777888 5666653 333 334456789999999999998764
No 305
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=59.39 E-value=5.5 Score=41.84 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=20.6
Q ss_pred HHHHHHHHcCCcEEEEcCCCChHHHHH
Q 003924 51 RKTMPLILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 51 ~~aip~il~g~dvvl~a~TGSGKT~af 77 (786)
....-.+..+..+++.||+|+|||...
T Consensus 37 ~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 37 NRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 333445567889999999999999753
No 306
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=59.37 E-value=6.6 Score=42.50 Aligned_cols=42 Identities=26% Similarity=0.504 Sum_probs=28.3
Q ss_pred cCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHH
Q 003924 59 SGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDL 105 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreL 105 (786)
.+.++++.|+||||||...-. ++..+.. .+.+++|+=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~-~~~~~~~----~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKM-LLLREYM----QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHH-HHHHHHT----TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHH-HHHHHHH----CCCEEEEEeCCcCH
Confidence 456899999999999975433 3333332 35668888787653
No 307
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=59.24 E-value=4.9 Score=43.44 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=19.9
Q ss_pred HHHHHHcCCc--EEEEcCCCChHHHHH
Q 003924 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (786)
Q Consensus 53 aip~il~g~d--vvl~a~TGSGKT~af 77 (786)
.+..++.|.+ ++..|+||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 4556778876 677999999999874
No 308
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=59.15 E-value=5.6 Score=43.10 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=18.1
Q ss_pred HHHHcCCc--EEEEcCCCChHHHHH
Q 003924 55 PLILSGAD--VVAMARTGSGKTAAF 77 (786)
Q Consensus 55 p~il~g~d--vvl~a~TGSGKT~af 77 (786)
..++.|.+ ++..|+||||||.+.
T Consensus 94 ~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 94 EEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhCCceEEEEeecCCCCCcceec
Confidence 34567876 778999999999864
No 309
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=59.01 E-value=6 Score=42.53 Aligned_cols=22 Identities=41% Similarity=0.617 Sum_probs=17.6
Q ss_pred HHHcCCc--EEEEcCCCChHHHHH
Q 003924 56 LILSGAD--VVAMARTGSGKTAAF 77 (786)
Q Consensus 56 ~il~g~d--vvl~a~TGSGKT~af 77 (786)
.++.|.+ ++..|+||||||.+.
T Consensus 75 ~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 75 DILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCcceEEEECCCCCCcceEe
Confidence 4567766 778999999999864
No 310
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=58.94 E-value=9.1 Score=42.07 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=19.1
Q ss_pred HHHHHHHHHHc--CCcEEEEcCCCChHHHH
Q 003924 49 IQRKTMPLILS--GADVVAMARTGSGKTAA 76 (786)
Q Consensus 49 iQ~~aip~il~--g~dvvl~a~TGSGKT~a 76 (786)
-+..++..++. +.-+++.||||||||..
T Consensus 154 ~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 154 HNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp HHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 34445544443 34588999999999974
No 311
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=58.89 E-value=12 Score=39.96 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afl 78 (786)
....+++.||+|+|||.++-
T Consensus 50 ~~~~vll~GppGtGKT~la~ 69 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAE 69 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34679999999999998543
No 312
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=58.67 E-value=5.6 Score=38.90 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~af 77 (786)
.|.-++++||+|||||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4566899999999999853
No 313
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=58.30 E-value=45 Score=35.32 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
.++++|++|+|||..+.
T Consensus 81 ~I~i~G~~G~GKSTl~~ 97 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIE 97 (355)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48889999999997644
No 314
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=58.11 E-value=6.2 Score=43.31 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=20.4
Q ss_pred HHHHHHcCCc--EEEEcCCCChHHHHH
Q 003924 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (786)
Q Consensus 53 aip~il~g~d--vvl~a~TGSGKT~af 77 (786)
.+..++.|.+ ++..|+||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5666778877 677999999999874
No 315
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=58.11 E-value=9.6 Score=37.16 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=45.3
Q ss_pred HHHHHH-HHHHHHHhcc--CCCcEEEEEcchhhHHHHHHHHHHc--------CCCceeecCCCCHHHHHHHHHHHhcCCc
Q 003924 249 EEKHAA-LLYMIREHIS--SDQQTLIFVSTKHHVEFLNVLFREE--------GLEPSVCYGDMDQDARKIHVSRFRARKT 317 (786)
Q Consensus 249 ~~k~~~-Ll~lL~~~~~--~~~k~IVF~~t~~~ae~l~~~L~~~--------g~~v~~lhg~l~q~~R~~~l~~F~~g~~ 317 (786)
..|... ++.++..... .+.++||.++|+.-+..++..+... ++.+..++|+.+...... .+ ....
T Consensus 52 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~ 127 (219)
T 1q0u_A 52 TGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALE---KL-NVQP 127 (219)
T ss_dssp HHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTC---CC-SSCC
T ss_pred ChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHH---Hc-CCCC
Confidence 345443 4444443322 3468999999999999888777653 567788888875433211 11 2356
Q ss_pred EEEEEec
Q 003924 318 MFLIVTD 324 (786)
Q Consensus 318 ~ILVaTd 324 (786)
+|+|+|.
T Consensus 128 ~Iiv~Tp 134 (219)
T 1q0u_A 128 HIVIGTP 134 (219)
T ss_dssp SEEEECH
T ss_pred CEEEeCH
Confidence 7999984
No 316
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=57.96 E-value=6.4 Score=42.33 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=18.1
Q ss_pred HHHHcCCc--EEEEcCCCChHHHHH
Q 003924 55 PLILSGAD--VVAMARTGSGKTAAF 77 (786)
Q Consensus 55 p~il~g~d--vvl~a~TGSGKT~af 77 (786)
..++.|.+ ++..|+||||||.+.
T Consensus 99 ~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 99 RSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHhCCCceEEEEeCCCCCCceeee
Confidence 34557776 778999999999874
No 317
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=57.86 E-value=11 Score=42.94 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=27.6
Q ss_pred CcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcH
Q 003924 61 ADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptr 103 (786)
.++++.|.||||||.+.-..++..+..+ .....+.++|=|-.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~-sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKS-TPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTC-CTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhC-CCcceEEEEeCCCh
Confidence 5799999999999987554444444333 23356666666653
No 318
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=57.80 E-value=6.7 Score=42.66 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=19.3
Q ss_pred HHHHHcCCc--EEEEcCCCChHHHHHH
Q 003924 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (786)
Q Consensus 54 ip~il~g~d--vvl~a~TGSGKT~afl 78 (786)
+..++.|.+ ++..|+||||||.+..
T Consensus 127 v~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 127 VQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp HHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred HHHHhcCCceEEEEecCCCCCCCeEec
Confidence 344667876 7789999999998754
No 319
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=57.59 E-value=6.5 Score=42.26 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=17.2
Q ss_pred HHcCCcEEEEcCCCChHHHH
Q 003924 57 ILSGADVVAMARTGSGKTAA 76 (786)
Q Consensus 57 il~g~dvvl~a~TGSGKT~a 76 (786)
+..|..+++.|+||||||..
T Consensus 172 i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHH
T ss_pred HhcCCEEEEECCCCCCHHHH
Confidence 44688999999999999974
No 320
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=57.39 E-value=5.5 Score=42.75 Aligned_cols=26 Identities=38% Similarity=0.543 Sum_probs=19.9
Q ss_pred HHHHHHcCCc--EEEEcCCCChHHHHHH
Q 003924 53 TMPLILSGAD--VVAMARTGSGKTAAFL 78 (786)
Q Consensus 53 aip~il~g~d--vvl~a~TGSGKT~afl 78 (786)
.+..++.|.+ ++..|+||||||.+..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 4455567876 6779999999998754
No 321
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=57.37 E-value=4.9 Score=38.88 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afl 78 (786)
.++.++++|++|||||...-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46789999999999998543
No 322
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=57.35 E-value=4.5 Score=38.03 Aligned_cols=18 Identities=11% Similarity=0.219 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCChHHHHH
Q 003924 60 GADVVAMARTGSGKTAAF 77 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~af 77 (786)
+.-++++|++|||||.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999854
No 323
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=57.34 E-value=4.4 Score=39.04 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=16.5
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q 003924 58 LSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 58 l~g~dvvl~a~TGSGKT~af 77 (786)
..|.-+++.|++|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999743
No 324
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=57.31 E-value=15 Score=42.42 Aligned_cols=68 Identities=9% Similarity=0.157 Sum_probs=48.3
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH-cCCCCEEEECcHHHHHHHhhccCCCCCceee
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l-~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~ 171 (786)
+.++||.|+|+.-+..+++.+... ++.+..++|.. ....+..+ .+..+|+|||. .+.. .+++. +.+
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~~-R~~~l~~F~~g~~~VLVaTd-----v~~r--GiDi~-v~~ 421 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKT-FDTEYPKTKLTDWDFVVTTD-----ISEM--GANFR-AGR 421 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTT-HHHHTTHHHHSCCSEEEECG-----GGGT--TCCCC-CSE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChHH-HHHHHHhhcCCCcEEEEECc-----HHHc--CcccC-ceE
Confidence 457999999999999999988876 47788888753 23233333 46789999995 3333 57775 776
Q ss_pred EE
Q 003924 172 VV 173 (786)
Q Consensus 172 vV 173 (786)
||
T Consensus 422 VI 423 (618)
T 2whx_A 422 VI 423 (618)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 325
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=57.09 E-value=5.1 Score=41.06 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=16.8
Q ss_pred HHcCCcEEEEcCCCChHHHHH
Q 003924 57 ILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 57 il~g~dvvl~a~TGSGKT~af 77 (786)
+..|.-+++.||||||||..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 345667899999999999743
No 326
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=57.03 E-value=4.7 Score=37.29 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
-+++.|++|||||...-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998543
No 327
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=56.98 E-value=5.5 Score=42.02 Aligned_cols=17 Identities=41% Similarity=0.487 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
-++++||||||||....
T Consensus 12 ~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 12 AIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47899999999997644
No 328
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=56.93 E-value=5.1 Score=37.96 Aligned_cols=19 Identities=21% Similarity=0.235 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afl 78 (786)
.+.++++|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4578999999999998644
No 329
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=56.81 E-value=6.7 Score=43.49 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=18.5
Q ss_pred HHHHcCCc--EEEEcCCCChHHHHHH
Q 003924 55 PLILSGAD--VVAMARTGSGKTAAFL 78 (786)
Q Consensus 55 p~il~g~d--vvl~a~TGSGKT~afl 78 (786)
..++.|.+ ++..|+||||||.+.+
T Consensus 130 ~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 130 DHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHhhcCCceEEEEeCCCCCCCCEEee
Confidence 34567876 7789999999998753
No 330
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=56.64 E-value=5 Score=39.56 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afl 78 (786)
++-+++.||||+|||...+
T Consensus 34 g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TEEEEEECCCTTTTHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4568999999999997544
No 331
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=56.60 E-value=38 Score=35.66 Aligned_cols=71 Identities=10% Similarity=0.116 Sum_probs=48.6
Q ss_pred HHHHHH-HHHHHHHhc--cCCCcEEEEEcchhhHHHHHHHHHH----cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEE
Q 003924 249 EEKHAA-LLYMIREHI--SSDQQTLIFVSTKHHVEFLNVLFRE----EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLI 321 (786)
Q Consensus 249 ~~k~~~-Ll~lL~~~~--~~~~k~IVF~~t~~~ae~l~~~L~~----~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILV 321 (786)
..|... ++.++.... ..+.++||.|+++.-+..++..+.. .++.+..++|+.+.......+. ..+|+|
T Consensus 69 sGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v 143 (394)
T 1fuu_A 69 TGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVV 143 (394)
T ss_dssp HHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEE
T ss_pred ChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEE
Confidence 445433 444444322 2456899999999999888877765 3678889999988766554443 467999
Q ss_pred Eec
Q 003924 322 VTD 324 (786)
Q Consensus 322 aTd 324 (786)
+|.
T Consensus 144 ~T~ 146 (394)
T 1fuu_A 144 GTP 146 (394)
T ss_dssp ECH
T ss_pred ECH
Confidence 984
No 332
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=56.59 E-value=48 Score=34.53 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
-+++.|++|+|||....
T Consensus 106 vi~ivG~~GsGKTTl~~ 122 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCG 122 (306)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEcCCCChHHHHHH
Confidence 37789999999997544
No 333
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=56.41 E-value=5.4 Score=43.38 Aligned_cols=32 Identities=31% Similarity=0.500 Sum_probs=22.7
Q ss_pred ChHHHHHHHH--------HHHcCCc--EEEEcCCCChHHHHH
Q 003924 46 PTPIQRKTMP--------LILSGAD--VVAMARTGSGKTAAF 77 (786)
Q Consensus 46 ptpiQ~~aip--------~il~g~d--vvl~a~TGSGKT~af 77 (786)
+..-|.+.+. .++.|.+ ++..|+||||||.+.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 4445665554 3557766 677999999999874
No 334
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=56.20 E-value=6.5 Score=38.12 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.0
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~af 77 (786)
.|+-+++.||+|||||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999843
No 335
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=56.00 E-value=5.1 Score=42.98 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=18.9
Q ss_pred HHHHHcCCc--EEEEcCCCChHHHHHH
Q 003924 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (786)
Q Consensus 54 ip~il~g~d--vvl~a~TGSGKT~afl 78 (786)
+..++.|.+ ++..|+||||||.+.+
T Consensus 77 v~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 77 VQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHhcCCceeEEEEECCCCCCCcEecc
Confidence 344557776 6789999999998754
No 336
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=55.63 E-value=6.1 Score=40.10 Aligned_cols=16 Identities=31% Similarity=0.129 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-++++|+||||||...
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 3789999999999743
No 337
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=55.49 E-value=27 Score=37.25 Aligned_cols=57 Identities=16% Similarity=0.297 Sum_probs=43.3
Q ss_pred CCCcEEEEEcchhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEec
Q 003924 265 SDQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (786)
Q Consensus 265 ~~~k~IVF~~t~~~ae~l~~~L~~~----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTd 324 (786)
.+.++||.++|+.-+..++..+... +..+..++|+.+... .+..+..+..+|+|+|+
T Consensus 107 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~iiv~T~ 167 (414)
T 3eiq_A 107 KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRA---EVQKLQMEAPHIIVGTP 167 (414)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHH---HHHHHTTTCCSEEEECH
T ss_pred CceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHH---HHHHHhcCCCCEEEECH
Confidence 4668999999999999888877764 567777788776543 34456667889999995
No 338
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=55.48 E-value=5.8 Score=37.94 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.9
Q ss_pred CcEEEEcCCCChHHHH
Q 003924 61 ADVVAMARTGSGKTAA 76 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~a 76 (786)
+-++++||+|||||..
T Consensus 2 ~ii~l~GpsGaGKsTl 17 (186)
T 3a00_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEESSSSSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4578999999999984
No 339
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=55.16 E-value=5.6 Score=37.65 Aligned_cols=19 Identities=26% Similarity=0.279 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~af 77 (786)
.+.-+++.|++|||||...
T Consensus 2 ~~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567899999999999853
No 340
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=55.12 E-value=6.3 Score=38.64 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=16.8
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q 003924 58 LSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 58 l~g~dvvl~a~TGSGKT~af 77 (786)
+.|+-++++||+|+|||...
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 46778999999999999843
No 341
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=55.06 E-value=6 Score=41.98 Aligned_cols=20 Identities=45% Similarity=0.610 Sum_probs=17.1
Q ss_pred HHcCCcEEEEcCCCChHHHH
Q 003924 57 ILSGADVVAMARTGSGKTAA 76 (786)
Q Consensus 57 il~g~dvvl~a~TGSGKT~a 76 (786)
+..|..+++.|+||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34688999999999999973
No 342
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=55.03 E-value=15 Score=36.28 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=29.2
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHHcC----CcEEEEcCCCChHHHHHH
Q 003924 33 NVFRAIKRKGYKVPTPIQRKTMPLILSG----ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 33 ~ll~~l~~~g~~~ptpiQ~~aip~il~g----~dvvl~a~TGSGKT~afl 78 (786)
.+.+-|.=.|+ .+... ..++..++.+ +.+++.||+|+|||..+.
T Consensus 29 ~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 29 PIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 55666654454 45555 5556666665 248999999999997653
No 343
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=54.70 E-value=14 Score=43.02 Aligned_cols=66 Identities=15% Similarity=0.134 Sum_probs=49.5
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHcCCCCEEEECcHHHHHHHhhccCCCCCceeeE
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLSEVEDMSLKSVEYV 172 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~v 172 (786)
+.++||.|||+.-+..+++.+... ++.+..++|+.+..+. ..++.+|+|+|. .+.. .+++. +++|
T Consensus 396 ~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----Vaer--GIDId-V~~V 460 (666)
T 3o8b_A 396 GGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMT--GYTGD-FDSV 460 (666)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHH--HCCCC-BSEE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHc--cCCCC-CcEE
Confidence 458999999999999998888764 5889999998876642 235568999995 2332 56664 7777
Q ss_pred E
Q 003924 173 V 173 (786)
Q Consensus 173 V 173 (786)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 6
No 344
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=54.21 E-value=21 Score=45.19 Aligned_cols=42 Identities=14% Similarity=0.308 Sum_probs=30.6
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEec
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSA 207 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SA 207 (786)
+.+-.++|+|||=--+|..-...+.+.+..+..++-+|..+-
T Consensus 1233 lr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAH 1274 (1321)
T 4f4c_A 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAH 1274 (1321)
T ss_dssp HSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECS
T ss_pred HhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 455678999999887777667777787877766665555543
No 345
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=54.03 E-value=56 Score=38.84 Aligned_cols=94 Identities=19% Similarity=0.233 Sum_probs=59.4
Q ss_pred CChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHHc---C-CCC
Q 003924 70 GSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEELA---Q-NPD 145 (786)
Q Consensus 70 GSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l~---~-~~d 145 (786)
.|||..+ +.-++..+.. .+.++||.+..+..+.-+.+.+... ++.+..+.|+.+..+....+. . ...
T Consensus 554 ~s~K~~~-L~~lL~~~~~----~g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~F~~~~~~ 624 (800)
T 3mwy_W 554 SSGKMVL-LDQLLTRLKK----DGHRVLIFSQMVRMLDILGDYLSIK----GINFQRLDGTVPSAQRRISIDHFNSPDSN 624 (800)
T ss_dssp TCHHHHH-HHHHHHHHTT----TTCCEEEEESCHHHHHHHHHHHHHH----TCCCEEESTTSCHHHHHHHHHTTSSTTCS
T ss_pred cChHHHH-HHHHHHHHhh----CCCeEEEEechHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhCCCCC
Confidence 3566543 3333444332 4678999999998888877777654 478889999988776655443 1 222
Q ss_pred --EEEECcHHHHHHHhhccCCCCCceeeEEeCCcc
Q 003924 146 --IIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (786)
Q Consensus 146 --IiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah 178 (786)
|++.|.... . ..+++.....||+=+.+
T Consensus 625 ~~v~LlSt~ag----g--~GlNL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 625 DFVFLLSTRAG----G--LGINLMTADTVVIFDSD 653 (800)
T ss_dssp CCCEEEEHHHH----T--TTCCCTTCCEEEESSCC
T ss_pred ceEEEEecccc----c--CCCCccccceEEEecCC
Confidence 444444333 2 36888888887775444
No 346
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=54.00 E-value=3.9 Score=38.73 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=17.1
Q ss_pred HcCCcEEEEcCCCChHHHHHH
Q 003924 58 LSGADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 58 l~g~dvvl~a~TGSGKT~afl 78 (786)
+.++.+++.|++|||||...-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356779999999999998543
No 347
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=53.82 E-value=6.7 Score=40.34 Aligned_cols=52 Identities=13% Similarity=0.277 Sum_probs=27.3
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHH-HHHHH--HcCCcEEEEcCCCChHHHH
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRK-TMPLI--LSGADVVAMARTGSGKTAA 76 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~-aip~i--l~g~dvvl~a~TGSGKT~a 76 (786)
.-+|+++|-...+.+.|... ...|+... ++..+ .-.+.+++.||+|+|||+.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~---i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMA---ILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp ------CCHHHHHHHHHHHH---HTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHH---HHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 34788888777777777642 12222221 12111 1124499999999999974
No 348
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=53.76 E-value=9.4 Score=47.72 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=29.2
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcH
Q 003924 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (786)
Q Consensus 63 vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptr 103 (786)
-+|.|..|||||.+.+--+...+... ..+.++|+|||..
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~--~~~~~il~lVP~q 42 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRA--PFGKPIIFLVPDQ 42 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHC--TTSSCEEEECCGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhC--CCCCcEEEEecCc
Confidence 37889999999998776666555543 2356799999976
No 349
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=53.72 E-value=5.8 Score=46.30 Aligned_cols=75 Identities=21% Similarity=0.284 Sum_probs=50.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHH--ccCCCCeEEEEEcC--------CChhHHHHHH----cCCCCEEEECcHHHHHHH
Q 003924 93 GVRALILSPTRDLALQTLKFTKEL--GRYTDLRISLLVGG--------DSMESQFEEL----AQNPDIIIATPGRLMHHL 158 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l--~~~~~l~v~~l~gg--------~~~~~~~~~l----~~~~dIiV~Tpgrll~~l 158 (786)
+.++||.|+++..+..+++.+... ....++.+..++|+ .+..++...+ .+..+|+|||. .+
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~~ 474 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----VA 474 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----SC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----cc
Confidence 568999999999999999988764 22236888889988 6665554433 24678999995 22
Q ss_pred hhccCCCCCceeeEEe
Q 003924 159 SEVEDMSLKSVEYVVF 174 (786)
Q Consensus 159 ~~~~~l~l~~l~~vV~ 174 (786)
. ..+++.++.+||.
T Consensus 475 ~--~GIDip~v~~VI~ 488 (699)
T 4gl2_A 475 E--EGLDIKECNIVIR 488 (699)
T ss_dssp C--TTSCCCSCCCCEE
T ss_pred c--cCCccccCCEEEE
Confidence 2 3688889988873
No 350
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=53.12 E-value=19 Score=41.13 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=30.3
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEecc
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SAT 208 (786)
+.+.+++|+||.-.-+|......+.+.+..+..+ .++++.+-
T Consensus 496 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~-~tvi~itH 537 (582)
T 3b5x_A 496 LRDAPVLILDEATSALDTESERAIQAALDELQKN-KTVLVIAH 537 (582)
T ss_pred HcCCCEEEEECccccCCHHHHHHHHHHHHHHcCC-CEEEEEec
Confidence 4567799999998888877777777777776544 45555544
No 351
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=52.96 E-value=6.8 Score=38.00 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHH
Q 003924 61 ADVVAMARTGSGKTAA 76 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~a 76 (786)
+.+|++||.|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999974
No 352
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=52.83 E-value=5.4 Score=37.96 Aligned_cols=19 Identities=26% Similarity=0.400 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~af 77 (786)
.|.-+++.|++|||||..+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4567899999999999843
No 353
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=52.64 E-value=8.1 Score=37.09 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~af 77 (786)
.|.-+++.||+|||||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5677889999999999843
No 354
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=52.52 E-value=6.1 Score=42.84 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=18.6
Q ss_pred HHHHHcCCc--EEEEcCCCChHHHHHH
Q 003924 54 MPLILSGAD--VVAMARTGSGKTAAFL 78 (786)
Q Consensus 54 ip~il~g~d--vvl~a~TGSGKT~afl 78 (786)
+..++.|.+ ++..|+||||||.+..
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEee
Confidence 344457766 7779999999998743
No 355
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=52.26 E-value=7 Score=37.90 Aligned_cols=20 Identities=20% Similarity=0.233 Sum_probs=16.6
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q 003924 58 LSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 58 l~g~dvvl~a~TGSGKT~af 77 (786)
..++-++++|++|||||...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 35678999999999999743
No 356
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=52.16 E-value=7.1 Score=36.39 Aligned_cols=18 Identities=17% Similarity=0.311 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChHHHHH
Q 003924 60 GADVVAMARTGSGKTAAF 77 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~af 77 (786)
+..+++.|+.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 456899999999999843
No 357
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=51.86 E-value=18 Score=43.99 Aligned_cols=79 Identities=23% Similarity=0.250 Sum_probs=43.0
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEE--------EEcCCChhHHHHHH----c-CCCCEEEECcHHHHHHH
Q 003924 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISL--------LVGGDSMESQFEEL----A-QNPDIIIATPGRLMHHL 158 (786)
Q Consensus 92 ~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~--------l~gg~~~~~~~~~l----~-~~~dIiV~Tpgrll~~l 158 (786)
.+.++||.|+++..+..+.+.+.......++++.. ++|+.+..++...+ . +..+|+|+|. .+
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~~ 704 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VA 704 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC-----C-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----ch
Confidence 46789999999999999999998763333344333 34555544433322 2 4578999994 23
Q ss_pred hhccCCCCCceeeEEeCCc
Q 003924 159 SEVEDMSLKSVEYVVFDEA 177 (786)
Q Consensus 159 ~~~~~l~l~~l~~vV~DEa 177 (786)
. ..+++..+++||+=+.
T Consensus 705 ~--eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 705 D--EGIDIVQCNLVVLYEY 721 (936)
T ss_dssp -------CCCCSEEEEESC
T ss_pred h--cCCcchhCCEEEEeCC
Confidence 3 2688889998886444
No 358
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=51.68 E-value=23 Score=48.64 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHCCCCCChHHHH-HHHH---HHHcCCcEEEEcCCCChHHHHHH
Q 003924 30 LSPNVFRAIKRKGYKVPTPIQR-KTMP---LILSGADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 30 Ls~~ll~~l~~~g~~~ptpiQ~-~aip---~il~g~dvvl~a~TGSGKT~afl 78 (786)
|...+.+.+.++|+ +|+|.+. +++. .+.....++++||||||||.++-
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~ 924 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE 924 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH
Confidence 33556666778898 5666554 3442 23345669999999999999865
No 359
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=51.52 E-value=15 Score=45.65 Aligned_cols=79 Identities=18% Similarity=0.147 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEe-----c
Q 003924 250 EKHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT-----D 324 (786)
Q Consensus 250 ~k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaT-----d 324 (786)
.|.......+...+..+.++||.++|+.-+...+..|......+..++|+++ .++..+|||+| +
T Consensus 211 GKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~ 279 (1108)
T 3l9o_A 211 GKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRS 279 (1108)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHH
T ss_pred ChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHH
Confidence 3443333333333456789999999999999999999887668889999876 34668899999 3
Q ss_pred ccccccC-CCCcceeE
Q 003924 325 VAARGID-IPLLDNVI 339 (786)
Q Consensus 325 v~arGlD-Ip~v~~VI 339 (786)
.+.++-. +..+.+||
T Consensus 280 ~L~~~~~~l~~l~lVV 295 (1108)
T 3l9o_A 280 MLYRGSEVMREVAWVI 295 (1108)
T ss_dssp HHHHCSSHHHHEEEEE
T ss_pred HHHcCccccccCCEEE
Confidence 4444433 55677777
No 360
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=51.18 E-value=17 Score=40.68 Aligned_cols=71 Identities=13% Similarity=0.191 Sum_probs=46.9
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc-cc----cc-c-CCCC
Q 003924 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-AA----RG-I-DIPL 334 (786)
Q Consensus 266 ~~k~IVF~~t~~~ae~l~~~L~~~----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv-~a----rG-l-DIp~ 334 (786)
+.++||.|+|+.-+..++..+... ++.+..+||+.+...+...+. ...+|+|+|.- +. .+ + ++..
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 678999999999888887777654 899999999986654432221 23679999953 22 22 3 5667
Q ss_pred cceeEe
Q 003924 335 LDNVIN 340 (786)
Q Consensus 335 v~~VI~ 340 (786)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788773
No 361
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=50.95 E-value=7.8 Score=41.07 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.3
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
-++++||||||||....
T Consensus 7 ~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999998543
No 362
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=50.52 E-value=9.7 Score=37.53 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=16.0
Q ss_pred HcCCcEEEEcCCCChHHHH
Q 003924 58 LSGADVVAMARTGSGKTAA 76 (786)
Q Consensus 58 l~g~dvvl~a~TGSGKT~a 76 (786)
..|.-+++.||+|||||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4678899999999999974
No 363
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=50.40 E-value=42 Score=39.16 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=54.4
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccC--------------------------------CCCeEEEEEcCCChhHHHHHH
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRY--------------------------------TDLRISLLVGGDSMESQFEEL 140 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~--------------------------------~~l~v~~l~gg~~~~~~~~~l 140 (786)
+.++||.||++.-+..++..+...... ....+..++||.+..++....
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~ 331 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIE 331 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHH
Confidence 567999999999999999888764321 013488899998876655433
Q ss_pred ----cCCCCEEEECcHHHHHHHhhccCCCCCceeeEEeC
Q 003924 141 ----AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVVFD 175 (786)
Q Consensus 141 ----~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV~D 175 (786)
.+...|+|||. .+. ..+++..+.+||.+
T Consensus 332 ~~f~~g~~~vlvaT~-----~l~--~Gidip~~~~VI~~ 363 (715)
T 2va8_A 332 EGFRQRKIKVIVATP-----TLA--AGVNLPARTVIIGD 363 (715)
T ss_dssp HHHHTTCSCEEEECG-----GGG--GSSCCCBSEEEECC
T ss_pred HHHHcCCCeEEEECh-----HHh--cccCCCceEEEEeC
Confidence 25788999994 223 26888888876644
No 364
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=50.39 E-value=7 Score=36.52 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-+++.|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 3789999999999854
No 365
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=50.37 E-value=7 Score=36.22 Aligned_cols=16 Identities=6% Similarity=-0.110 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-+++.|+.|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999854
No 366
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=50.05 E-value=21 Score=42.46 Aligned_cols=71 Identities=13% Similarity=0.191 Sum_probs=46.8
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc-cc----cc-c-CCCC
Q 003924 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV-AA----RG-I-DIPL 334 (786)
Q Consensus 266 ~~k~IVF~~t~~~ae~l~~~L~~~----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv-~a----rG-l-DIp~ 334 (786)
+.++||.|+|+.-+..+...+... ++.+..+||+.+...+...+. +..+|+|+|.- +. .+ + ++..
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999888877777654 899999999987655432221 35789999943 22 22 2 4556
Q ss_pred cceeEe
Q 003924 335 LDNVIN 340 (786)
Q Consensus 335 v~~VI~ 340 (786)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777773
No 367
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=49.96 E-value=7.7 Score=36.96 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~af 77 (786)
.+..++++|++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567999999999999854
No 368
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=49.94 E-value=17 Score=31.30 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=32.9
Q ss_pred hccCCCcEEEEEcchhhHHHHHHHHHHcCCC-ceeecCCCC
Q 003924 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMD 301 (786)
Q Consensus 262 ~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~-v~~lhg~l~ 301 (786)
.+....++||+|.+-..+...+..|...|+. +..+.|++.
T Consensus 48 ~l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 48 SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp HSCTTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred cCCCCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 3456778999999988999999999999996 677777753
No 369
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=49.84 E-value=11 Score=41.64 Aligned_cols=68 Identities=7% Similarity=0.074 Sum_probs=46.0
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHHH-cCCCCEEEECcHHHHHHHhhccCCCCCceee
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEEL-AQNPDIIIATPGRLMHHLSEVEDMSLKSVEY 171 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~l-~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~ 171 (786)
+.++||.||++.-+..+++.+... ++.+..++|.... ..+..+ .+..+|+|||. .+.. .+++.. .+
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~R~-~~~~~f~~g~~~iLVaT~-----v~~~--GiDip~-~~ 256 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKSYD-TEYPKCKNGDWDFVITTD-----ISEM--GANFGA-SR 256 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTCCC-CCGGGSSSCCCSEEEESS-----CC-----CCCSC-SE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHHHH-HHHhhccCCCceEEEECC-----hHHh--CeecCC-CE
Confidence 457999999999999999988876 4788888875332 222222 35688999994 2222 567776 55
Q ss_pred EE
Q 003924 172 VV 173 (786)
Q Consensus 172 vV 173 (786)
||
T Consensus 257 VI 258 (459)
T 2z83_A 257 VI 258 (459)
T ss_dssp EE
T ss_pred EE
Confidence 55
No 370
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=49.79 E-value=33 Score=27.83 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=30.3
Q ss_pred cCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCC
Q 003924 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (786)
Q Consensus 264 ~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~ 301 (786)
....+++|+|.+-..+...+..|...|+..+.+.|++.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~lGG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEEEETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEeccCHH
Confidence 45678999999988899999999999997544447653
No 371
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=49.75 E-value=14 Score=39.55 Aligned_cols=38 Identities=21% Similarity=0.194 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 60 GADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
|.-+++.|++|+|||...+..+.+... .+.+++|+...
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~-----~g~~vlyid~E 100 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQR-----EGKTCAFIDAE 100 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHH-----TTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEeCC
Confidence 456899999999999876544443332 24467887753
No 372
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=49.53 E-value=12 Score=35.20 Aligned_cols=16 Identities=19% Similarity=0.279 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-+++.|+.|||||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999753
No 373
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=49.35 E-value=9.2 Score=37.24 Aligned_cols=31 Identities=19% Similarity=0.108 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHcCCcEEEEcCCCChHHHHH
Q 003924 46 PTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 46 ptpiQ~~aip~il~g~dvvl~a~TGSGKT~af 77 (786)
.++.++.. ..+..|.-+++.|++|||||...
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHHH
Confidence 45566665 33456677899999999999754
No 374
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=49.09 E-value=11 Score=40.46 Aligned_cols=20 Identities=45% Similarity=0.617 Sum_probs=16.3
Q ss_pred cCCc--EEEEcCCCChHHHHHH
Q 003924 59 SGAD--VVAMARTGSGKTAAFL 78 (786)
Q Consensus 59 ~g~d--vvl~a~TGSGKT~afl 78 (786)
.|.+ ++..|+||||||.+..
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEEe
Confidence 4766 6889999999998754
No 375
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=48.90 E-value=12 Score=47.56 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=31.9
Q ss_pred CCceeeEEeCCccccccCChHHHHHHHHhhcccCCceEEEecc
Q 003924 166 LKSVEYVVFDEADCLFGMGFAEQLHKILGQLSENRQTLLFSAT 208 (786)
Q Consensus 166 l~~l~~vV~DEah~l~~~gf~~~l~~Il~~l~~~~q~ll~SAT 208 (786)
+.+-+++|+||+=.-+|..-...+.+.+..+..++-+|+.+--
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHr 612 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHR 612 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 4567799999998888877677777777777666666665543
No 376
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=48.80 E-value=36 Score=39.77 Aligned_cols=73 Identities=14% Similarity=0.153 Sum_probs=54.4
Q ss_pred EEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChh---HHHHHHc---CCCCEEEECcHHHHHHHhhccCCCCCce
Q 003924 96 ALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSME---SQFEELA---QNPDIIIATPGRLMHHLSEVEDMSLKSV 169 (786)
Q Consensus 96 ~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~---~~~~~l~---~~~dIiV~Tpgrll~~l~~~~~l~l~~l 169 (786)
.+|+|+++.-+..+++.+... ++.+..++|+.+.. .+...+. +..+|+|||. .+. ..+++ .+
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e--~GlDi-~v 390 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIG--MGLNL-SI 390 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGG--SSCCC-CB
T ss_pred CEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHH--CCcCc-Cc
Confidence 467789998888888888774 57899999998876 3444444 4579999995 233 26888 89
Q ss_pred eeEEeCCcccc
Q 003924 170 EYVVFDEADCL 180 (786)
Q Consensus 170 ~~vV~DEah~l 180 (786)
.+||+-.+...
T Consensus 391 ~~VI~~~~~k~ 401 (677)
T 3rc3_A 391 RRIIFYSLIKP 401 (677)
T ss_dssp SEEEESCSBC-
T ss_pred cEEEECCcccc
Confidence 99999888654
No 377
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=48.61 E-value=25 Score=33.39 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=18.3
Q ss_pred EEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc
Q 003924 65 AMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (786)
Q Consensus 65 l~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~ 100 (786)
..+..|+|||.+.+..+. .+.. .|.+++++=
T Consensus 7 ~s~kgG~GKTt~a~~la~-~la~----~g~~vlliD 37 (206)
T 4dzz_A 7 LNPKGGSGKTTAVINIAT-ALSR----SGYNIAVVD 37 (206)
T ss_dssp CCSSTTSSHHHHHHHHHH-HHHH----TTCCEEEEE
T ss_pred EeCCCCccHHHHHHHHHH-HHHH----CCCeEEEEE
Confidence 346788999986553333 2232 255666664
No 378
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=48.50 E-value=8.9 Score=41.19 Aligned_cols=18 Identities=33% Similarity=0.446 Sum_probs=14.9
Q ss_pred cCCcEEEEcCCCChHHHH
Q 003924 59 SGADVVAMARTGSGKTAA 76 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~a 76 (786)
.+.-+++.||||||||..
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 344689999999999974
No 379
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=48.40 E-value=9.3 Score=40.51 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
+.+++.||+|+|||....
T Consensus 71 ~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CEEEEEESTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 469999999999998643
No 380
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=48.12 E-value=16 Score=36.56 Aligned_cols=22 Identities=36% Similarity=0.318 Sum_probs=17.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQ 83 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile 83 (786)
.+++.++.|+|||.+.+--...
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999876544443
No 381
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=48.10 E-value=60 Score=27.47 Aligned_cols=62 Identities=10% Similarity=0.026 Sum_probs=40.9
Q ss_pred HHHHhccCCCcEEEEE------cchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEE
Q 003924 258 MIREHISSDQQTLIFV------STKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFL 320 (786)
Q Consensus 258 lL~~~~~~~~k~IVF~------~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~IL 320 (786)
.+.+.+. ..+++||. ++|..|..+..+|...++....+.-..++..+......+....+..|
T Consensus 9 ~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v 76 (105)
T 2yan_A 9 RLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQL 76 (105)
T ss_dssp HHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEE
T ss_pred HHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeE
Confidence 3444443 34688887 68899999999999999887777666666665555444433334333
No 382
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=47.68 E-value=9.1 Score=41.87 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
-++++||||||||....
T Consensus 4 ~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEECSSSSHHHHHH
T ss_pred EEEEECcchhhHHHHHH
Confidence 37899999999997543
No 383
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=47.35 E-value=8.7 Score=38.12 Aligned_cols=20 Identities=25% Similarity=0.456 Sum_probs=16.0
Q ss_pred HHcCCcEEEEcCCCChHHHH
Q 003924 57 ILSGADVVAMARTGSGKTAA 76 (786)
Q Consensus 57 il~g~dvvl~a~TGSGKT~a 76 (786)
+..|.-++++||.|||||..
T Consensus 13 ~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp --CCCEEEEECCTTSCHHHH
T ss_pred CCCCcEEEEECCCCCCHHHH
Confidence 44677899999999999984
No 384
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=47.34 E-value=8.6 Score=41.52 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChHHHH
Q 003924 59 SGADVVAMARTGSGKTAA 76 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~a 76 (786)
.|.-+++.||||||||..
T Consensus 135 ~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSEEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 466789999999999974
No 385
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=47.31 E-value=9.7 Score=40.62 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=14.2
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
-++++||||||||....
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 57899999999997543
No 386
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=47.28 E-value=66 Score=32.69 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=59.1
Q ss_pred CCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHHH---HcC--
Q 003924 68 RTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFEE---LAQ-- 142 (786)
Q Consensus 68 ~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~~---l~~-- 142 (786)
...+||..+ +.-++..+.. .+.++||.|.+...+..+...+... .++.+..+.|+.+..+.... +..
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~----~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~~~i~~F~~~~ 163 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD----EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERDDIISKFQNNP 163 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH----TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHHHHHHHHHHCT
T ss_pred cccCHHHHH-HHHHHHHHHh----CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHHHHHHHhcCCC
Confidence 345777754 3334444432 3568999999999988888887762 13677788888876544332 222
Q ss_pred CCC-EEEECcHHHHHHHhhccCCCCCceeeEEeCCcc
Q 003924 143 NPD-IIIATPGRLMHHLSEVEDMSLKSVEYVVFDEAD 178 (786)
Q Consensus 143 ~~d-IiV~Tpgrll~~l~~~~~l~l~~l~~vV~DEah 178 (786)
.+. ++++| ... ...+++..+..||+=+..
T Consensus 164 ~~~v~L~st-~~~------g~Glnl~~a~~VI~~d~~ 193 (271)
T 1z5z_A 164 SVKFIVLSV-KAG------GFGINLTSANRVIHFDRW 193 (271)
T ss_dssp TCCEEEEEC-CTT------CCCCCCTTCSEEEECSCC
T ss_pred CCCEEEEeh-hhh------cCCcCcccCCEEEEECCC
Confidence 345 44555 322 136778888877764443
No 387
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=46.94 E-value=16 Score=38.15 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q 003924 60 GADVVAMARTGSGKTAAF 77 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~af 77 (786)
+.-+.+.||+|||||...
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 345778999999999743
No 388
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=46.75 E-value=7.8 Score=36.56 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afl 78 (786)
.|.-+++.|+.|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 35568899999999997543
No 389
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=46.71 E-value=9.2 Score=36.91 Aligned_cols=19 Identities=42% Similarity=0.508 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~af 77 (786)
.|.-+++.|+.|||||..+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567999999999999853
No 390
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=46.66 E-value=71 Score=27.70 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=44.8
Q ss_pred EEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEe
Q 003924 269 TLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVT 323 (786)
Q Consensus 269 ~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaT 323 (786)
.+||.+...-...+...+...|..+..+|++.+...|..-+..|..-.++|--+.
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdvrtve 59 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVE 59 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEEEECC
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCceeeec
Confidence 4677777777777777888889999999999999999999999988766655443
No 391
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=46.64 E-value=12 Score=36.44 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=16.7
Q ss_pred HHHcCCcEEEEcCCCChHHHHH
Q 003924 56 LILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 56 ~il~g~dvvl~a~TGSGKT~af 77 (786)
.+..|.-+.+.||+|||||..+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4667888999999999999843
No 392
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=46.17 E-value=39 Score=40.28 Aligned_cols=55 Identities=9% Similarity=-0.061 Sum_probs=42.3
Q ss_pred CCCcEEEEEcchhhHHHHHHHH----HHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc
Q 003924 265 SDQQTLIFVSTKHHVEFLNVLF----REEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (786)
Q Consensus 265 ~~~k~IVF~~t~~~ae~l~~~L----~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv 325 (786)
.+.+++|.|+|+.-|...+..+ ...|+.+.+++|+++...|.... .++|+|+|+-
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 4678999999998887666554 44689999999999987655432 3789999963
No 393
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=45.69 E-value=8.3 Score=36.48 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afl 78 (786)
+.-+++.|++|||||...-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458899999999998543
No 394
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=45.69 E-value=19 Score=34.41 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=34.2
Q ss_pred CCcEEEEEcchhhHHH-HHHHHHH---cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc
Q 003924 266 DQQTLIFVSTKHHVEF-LNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (786)
Q Consensus 266 ~~k~IVF~~t~~~ae~-l~~~L~~---~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv 325 (786)
+.++||+|++..-++. +.+.+.. .++.+..++|+.+...+...+. ...+|+|+|.-
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 141 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQ 141 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHH
Confidence 6789999999988777 5555543 3677888888754332211111 24678888843
No 395
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=45.52 E-value=68 Score=27.77 Aligned_cols=53 Identities=8% Similarity=0.073 Sum_probs=38.1
Q ss_pred HHHHHhccCCCcEEEEE------cchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHH
Q 003924 257 YMIREHISSDQQTLIFV------STKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310 (786)
Q Consensus 257 ~lL~~~~~~~~k~IVF~------~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~ 310 (786)
..+...+ ...+++||. ++|..|..+..+|...++....+.=..++..+.....
T Consensus 7 ~~v~~~i-~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~ 65 (111)
T 3zyw_A 7 LRLKKLT-HAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKA 65 (111)
T ss_dssp HHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHHH-hcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHH
Confidence 3444444 356899998 6899999999999999988777665556666554433
No 396
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=45.49 E-value=7.2 Score=36.86 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afl 78 (786)
.|..+++.|++|||||...-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568999999999998543
No 397
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=45.48 E-value=8 Score=36.22 Aligned_cols=18 Identities=39% Similarity=0.366 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHHH
Q 003924 60 GADVVAMARTGSGKTAAF 77 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~af 77 (786)
|.-+++.|+.|||||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 456889999999999853
No 398
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=45.43 E-value=13 Score=38.88 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChHHHH
Q 003924 59 SGADVVAMARTGSGKTAA 76 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~a 76 (786)
.|.-+.+.||+|||||..
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 467789999999999974
No 399
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=45.33 E-value=32 Score=38.33 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=20.6
Q ss_pred HHHHHH---HcCCcEEEEcCCCChHHHHHH
Q 003924 52 KTMPLI---LSGADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 52 ~aip~i---l~g~dvvl~a~TGSGKT~afl 78 (786)
++|..+ ..|+.+++.|+.|+|||....
T Consensus 140 r~ID~L~pi~kGq~~~i~G~sGvGKTtL~~ 169 (473)
T 1sky_E 140 KVVDLLAPYIKGGKIGLFGGAGVGKTVLIQ 169 (473)
T ss_dssp HHHHHHSCEETTCEEEEECCSSSCHHHHHH
T ss_pred hHHHHHhhhccCCEEEEECCCCCCccHHHH
Confidence 355544 368889999999999997544
No 400
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=45.29 E-value=78 Score=27.17 Aligned_cols=54 Identities=4% Similarity=-0.023 Sum_probs=38.1
Q ss_pred HHHHHHhccCCCcEEEEEc------chhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHH
Q 003924 256 LYMIREHISSDQQTLIFVS------TKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVS 310 (786)
Q Consensus 256 l~lL~~~~~~~~k~IVF~~------t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~ 310 (786)
...+...+ ...+++||.. +|..|..+..+|...++....+.=..+...+.....
T Consensus 8 ~~~v~~~i-~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~ 67 (109)
T 3ipz_A 8 KDTLEKLV-NSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKE 67 (109)
T ss_dssp HHHHHHHH-TSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHH
T ss_pred HHHHHHHH-ccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH
Confidence 34444444 3568999987 599999999999999988776655455555554433
No 401
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=44.69 E-value=48 Score=39.59 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=42.3
Q ss_pred CCCcEEEEEcchhhHHHHHHHHH----HcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEec
Q 003924 265 SDQQTLIFVSTKHHVEFLNVLFR----EEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (786)
Q Consensus 265 ~~~k~IVF~~t~~~ae~l~~~L~----~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTd 324 (786)
.+..++|.++|+.-|...++.+. ..|+.+.+++|+++...|.... .++|+++|+
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTp 180 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTN 180 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEH
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 36689999999998887665554 4689999999999987665432 378999996
No 402
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=44.55 E-value=12 Score=32.41 Aligned_cols=38 Identities=11% Similarity=0.159 Sum_probs=32.7
Q ss_pred ccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCC
Q 003924 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (786)
Q Consensus 263 ~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l 300 (786)
+....+++|+|.+-..+...+..|...|+.+..+.|++
T Consensus 53 l~~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 53 FNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CCTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred hcCCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 34677899999999899999999999999988887765
No 403
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=44.24 E-value=44 Score=34.23 Aligned_cols=54 Identities=17% Similarity=0.251 Sum_probs=41.7
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHc----CCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEec
Q 003924 266 DQQTLIFVSTKHHVEFLNVLFREE----GLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (786)
Q Consensus 266 ~~k~IVF~~t~~~ae~l~~~L~~~----g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTd 324 (786)
+.++||.++++.-+..++..+... +..+..++|+.+....... +. ..+|+|+|.
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~ 113 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATP 113 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECH
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECH
Confidence 678999999999999988888753 5778889999887654332 22 378999995
No 404
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=44.10 E-value=10 Score=36.06 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-+++.|++|||||..+
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4789999999999854
No 405
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=43.99 E-value=31 Score=43.16 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=39.9
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHhhcC-------CCCCeEEEEEcCcHHHHHHHHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLNQHV-------PQGGVRALILSPTRDLALQTLKFTKE 115 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~~~~-------~~~g~r~LIL~PtreLa~Q~~~~l~~ 115 (786)
..+|.|..|||||.+...-++..|..+. .....++|+|+=|+.-|..+.+.+..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 4599999999999987777777665421 12234799999999888887775543
No 406
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=43.81 E-value=11 Score=40.50 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afl 78 (786)
...+++.||+|+|||..+-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4579999999999997543
No 407
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=43.66 E-value=22 Score=33.87 Aligned_cols=24 Identities=17% Similarity=0.043 Sum_probs=16.1
Q ss_pred cEEEEcCCCChHHHHHHHHHHHHHh
Q 003924 62 DVVAMARTGSGKTAAFLVPMLQRLN 86 (786)
Q Consensus 62 dvvl~a~TGSGKT~afllpile~L~ 86 (786)
-+.+.|+.|||||.. +.-++..|.
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhH
Confidence 367899999999974 333344443
No 408
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=43.65 E-value=26 Score=30.97 Aligned_cols=37 Identities=11% Similarity=0.117 Sum_probs=31.3
Q ss_pred CC-CcEEEEE-cchhhHHHHHHHHHHcCCCceeecCCCC
Q 003924 265 SD-QQTLIFV-STKHHVEFLNVLFREEGLEPSVCYGDMD 301 (786)
Q Consensus 265 ~~-~k~IVF~-~t~~~ae~l~~~L~~~g~~v~~lhg~l~ 301 (786)
.. .++||+| .+-..+..++..|...|+.+..+.|++.
T Consensus 87 ~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~ 125 (134)
T 3g5j_A 87 LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYK 125 (134)
T ss_dssp TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHH
T ss_pred cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHH
Confidence 45 7899999 4777888999999999998888888865
No 409
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=43.61 E-value=15 Score=37.19 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=17.4
Q ss_pred HcCCcEEEEcCCCChHHHHH
Q 003924 58 LSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 58 l~g~dvvl~a~TGSGKT~af 77 (786)
+.|..+++.|++|||||...
T Consensus 46 l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34899999999999999854
No 410
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=43.12 E-value=10 Score=35.82 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.4
Q ss_pred CcEEEEcCCCChHHHHH
Q 003924 61 ADVVAMARTGSGKTAAF 77 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~af 77 (786)
.-++++|+.|||||...
T Consensus 6 ~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLS 22 (193)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999854
No 411
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=43.07 E-value=10 Score=37.99 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=30.1
Q ss_pred CCCccCCCCCHHHHHHHHHCCCCCChHHHHHHHHHHH--cCCcEEEEcCCCChHHHHH
Q 003924 22 SGGFESLNLSPNVFRAIKRKGYKVPTPIQRKTMPLIL--SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 22 ~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ~~aip~il--~g~dvvl~a~TGSGKT~af 77 (786)
.-+|+++.-.+.....+...-.. . -....+..+- -.+.+++.||+|+|||...
T Consensus 12 ~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 12 KVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 45788887777766666543110 0 0011121111 1245999999999999743
No 412
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=43.04 E-value=21 Score=36.65 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.6
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
.+++.||+|+|||..+-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 59999999999997543
No 413
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=42.85 E-value=17 Score=37.87 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-+.+.|++|||||...
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4778999999999743
No 414
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=42.57 E-value=10 Score=36.62 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHHHcCCcEEEEcCCCChHHHHH
Q 003924 45 VPTPIQRKTMPLILSGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 45 ~ptpiQ~~aip~il~g~dvvl~a~TGSGKT~af 77 (786)
..+..++..+ ....|.-+++.|+.|||||...
T Consensus 11 ~~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 11 SVEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCCHHHHHHH-HTSCCEEEEEECSTTSSHHHHH
T ss_pred ccCHHHHHHh-cCCCCeEEEEECCCCCCHHHHH
Confidence 3444554332 1224566889999999999754
No 415
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=42.55 E-value=26 Score=30.02 Aligned_cols=39 Identities=8% Similarity=0.101 Sum_probs=32.9
Q ss_pred ccCCCcEEEEEcchhhHHHHHHHHHHcCCC-ceeecCCCC
Q 003924 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMD 301 (786)
Q Consensus 263 ~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~-v~~lhg~l~ 301 (786)
+....+++|+|.+-..+...+..|...|+. +..+.|++.
T Consensus 55 l~~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 55 NDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp SCTTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred cCCCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 456788999999988999999999999996 667888754
No 416
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=42.30 E-value=11 Score=36.28 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=14.6
Q ss_pred CcEEEEcCCCChHHHHH
Q 003924 61 ADVVAMARTGSGKTAAF 77 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~af 77 (786)
.-+++.|+.|||||...
T Consensus 19 ~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SCEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36999999999999854
No 417
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=42.29 E-value=12 Score=35.41 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~af 77 (786)
.+.-+++.|++|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999854
No 418
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=42.28 E-value=19 Score=34.70 Aligned_cols=32 Identities=16% Similarity=0.222 Sum_probs=21.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcH
Q 003924 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTR 103 (786)
Q Consensus 63 vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Ptr 103 (786)
+++.|++|||||.-+. .|... +..++|+....
T Consensus 2 ilV~Gg~~SGKS~~A~-----~la~~----~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAE-----ALIGD----APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHH-----HHHCS----CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHH-----HHHhc----CCCeEEEecCC
Confidence 6899999999996443 33332 33578887744
No 419
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=41.69 E-value=32 Score=32.03 Aligned_cols=82 Identities=12% Similarity=-0.020 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEeccccccc
Q 003924 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDVAARGI 330 (786)
Q Consensus 251 k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv~arGl 330 (786)
.....+.++.+....+.+++|.|.+..+++.|-+.|-...-...+=|+-.... ......|+|+++-..
T Consensus 24 ~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~---------~~~~~PV~L~~~~~~--- 91 (150)
T 3sxu_A 24 VEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEG---------PRGGAPVEIAWPQKR--- 91 (150)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCS---------STTCCSEEEECTTSC---
T ss_pred HHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCC---------CCCCCCEEEeCCCCC---
Confidence 55667778888888899999999999999999999987655544445421110 013457999875421
Q ss_pred CCCCcceeEecCCC
Q 003924 331 DIPLLDNVINWDFP 344 (786)
Q Consensus 331 DIp~v~~VI~~d~P 344 (786)
.-+.-+++||.+.-
T Consensus 92 ~~~~~~vLinL~~~ 105 (150)
T 3sxu_A 92 SSSRRDILISLRTS 105 (150)
T ss_dssp CCSCCSEEEECCSS
T ss_pred CCCcCCEEEECCCC
Confidence 11235689988753
No 420
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=41.32 E-value=27 Score=40.75 Aligned_cols=84 Identities=15% Similarity=0.202 Sum_probs=55.7
Q ss_pred HHHHHHH-HHHHHHhccCCCcEEEEEcchhhHHHHHHHHHH---cCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEec
Q 003924 249 EEKHAAL-LYMIREHISSDQQTLIFVSTKHHVEFLNVLFRE---EGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (786)
Q Consensus 249 ~~k~~~L-l~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~---~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTd 324 (786)
..|.... +.++.. +..+.++|+.++++.-+..++..+.. .|+.+..++|+.....+ ..+..+|+|+|+
T Consensus 51 sGKT~~~~l~il~~-~~~~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-------~~~~~~Iiv~Tp 122 (702)
T 2p6r_A 51 AGKTLLAEMAMVRE-AIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDE-------HLGDCDIIVTTS 122 (702)
T ss_dssp HHHHHHHHHHHHHH-HHTTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEECSSCBCCSS-------CSTTCSEEEEEH
T ss_pred cHHHHHHHHHHHHH-HHhCCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEEeCCCCcchh-------hccCCCEEEECH
Confidence 4454443 333333 33578999999999999988887743 37888999998765432 124789999996
Q ss_pred -----ccccccC-CCCcceeEe
Q 003924 325 -----VAARGID-IPLLDNVIN 340 (786)
Q Consensus 325 -----v~arGlD-Ip~v~~VI~ 340 (786)
.+..+.. +..+++||.
T Consensus 123 e~l~~~l~~~~~~l~~~~~vIi 144 (702)
T 2p6r_A 123 EKADSLIRNRASWIKAVSCLVV 144 (702)
T ss_dssp HHHHHHHHTTCSGGGGCCEEEE
T ss_pred HHHHHHHHcChhHHhhcCEEEE
Confidence 2333333 567788873
No 421
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=41.14 E-value=17 Score=31.40 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=33.2
Q ss_pred cCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCC
Q 003924 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (786)
Q Consensus 264 ~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~ 301 (786)
....+++|||.+-..+...+..|...|+.+..+.|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 56678999999998999999999999998888888754
No 422
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=41.09 E-value=2.4e+02 Score=26.65 Aligned_cols=136 Identities=13% Similarity=0.044 Sum_probs=52.2
Q ss_pred HcCCcEEEEcCCCChHHHHHHHHHHHHHhhc--------CCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCC-eEEEEE
Q 003924 58 LSGADVVAMARTGSGKTAAFLVPMLQRLNQH--------VPQGGVRALILSPTRDLALQTLKFTKELGRYTDL-RISLLV 128 (786)
Q Consensus 58 l~g~dvvl~a~TGSGKT~afllpile~L~~~--------~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l-~v~~l~ 128 (786)
+-|-.+-+.+..|-|=|+.+.+|+...-... ....+.++||+-........+...+..++ + .+....
T Consensus 18 ~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g----~~~v~~a~ 93 (206)
T 3mm4_A 18 SHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMG----VSEVEQCD 93 (206)
T ss_dssp -------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTT----CSEEEEES
T ss_pred ccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcC----CCeeeeeC
Confidence 3455677888899999999999975432111 11234578888887777666666666543 3 222221
Q ss_pred cCCChhHHHHHHcCCCCEEEECcHHHHHHHhhc-------cCCCCCceeeEEeCCccccccCChHHHHHHHHhh---ccc
Q 003924 129 GGDSMESQFEELAQNPDIIIATPGRLMHHLSEV-------EDMSLKSVEYVVFDEADCLFGMGFAEQLHKILGQ---LSE 198 (786)
Q Consensus 129 gg~~~~~~~~~l~~~~dIiV~Tpgrll~~l~~~-------~~l~l~~l~~vV~DEah~l~~~gf~~~l~~Il~~---l~~ 198 (786)
+....+..+... ....-..+++||+|= .|.+++-...+..|... ...
T Consensus 94 ---------------------~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~--~lp~~~G~el~~~lr~~~~~~~~ 150 (206)
T 3mm4_A 94 ---------------------SGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDC--QMPEMDGYEATREIRKVEKSYGV 150 (206)
T ss_dssp ---------------------SHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEES--CCSSSCHHHHHHHHHHHHHTTTC
T ss_pred ---------------------CHHHHHHHHHhhcccccccccccCCCCCEEEEcC--CCCCCCHHHHHHHHHhhhhhcCC
Confidence 222233333321 011223467888883 23344433344444332 235
Q ss_pred CCceEEEeccC-c-HHHHHHHHhc
Q 003924 199 NRQTLLFSATL-P-SALAEFAKAG 220 (786)
Q Consensus 199 ~~q~ll~SATl-~-~~l~~~~~~~ 220 (786)
...+|++|+.. . .........+
T Consensus 151 ~~piI~ls~~~~~~~~~~~~~~~G 174 (206)
T 3mm4_A 151 RTPIIAVSGHDPGSEEARETIQAG 174 (206)
T ss_dssp CCCEEEEESSCCCHHHHHHHHHHT
T ss_pred CCcEEEEECCCCcHHHHHHHHhCC
Confidence 67899999975 3 3344444444
No 423
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=41.07 E-value=11 Score=40.48 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=13.9
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-+++.||||||||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999765
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=40.96 E-value=12 Score=34.50 Aligned_cols=15 Identities=27% Similarity=0.446 Sum_probs=13.1
Q ss_pred cEEEEcCCCChHHHH
Q 003924 62 DVVAMARTGSGKTAA 76 (786)
Q Consensus 62 dvvl~a~TGSGKT~a 76 (786)
-.++.||+|||||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999975
No 425
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=40.90 E-value=14 Score=40.87 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=15.5
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
+.+++.||+|+|||..+.
T Consensus 64 ~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcCCHHHHHH
Confidence 579999999999997644
No 426
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=40.54 E-value=13 Score=34.57 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=15.3
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
+.+++.|..|||||.+.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 568999999999998643
No 427
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=40.53 E-value=11 Score=37.12 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=11.7
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~af 77 (786)
.|.-+.+.||+|||||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4667889999999999743
No 428
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=40.21 E-value=16 Score=43.14 Aligned_cols=25 Identities=40% Similarity=0.571 Sum_probs=20.4
Q ss_pred HHHHHHcCCc--EEEEcCCCChHHHHH
Q 003924 53 TMPLILSGAD--VVAMARTGSGKTAAF 77 (786)
Q Consensus 53 aip~il~g~d--vvl~a~TGSGKT~af 77 (786)
.+..++.|.+ ++..|+||||||.+.
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 5677888877 667899999999874
No 429
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=40.09 E-value=12 Score=35.12 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-+++.|++|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999854
No 430
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=40.04 E-value=12 Score=36.19 Aligned_cols=17 Identities=29% Similarity=0.431 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998543
No 431
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=40.00 E-value=6.6 Score=39.69 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afl 78 (786)
.+.+++.||+|+|||...-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3569999999999997543
No 432
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=39.57 E-value=13 Score=35.41 Aligned_cols=19 Identities=21% Similarity=0.274 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~af 77 (786)
.+.-+++.|++|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567999999999999854
No 433
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=39.47 E-value=2.9e+02 Score=27.16 Aligned_cols=40 Identities=8% Similarity=-0.016 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCC
Q 003924 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGL 291 (786)
Q Consensus 252 ~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~ 291 (786)
...+..+|......+..+.|||.+-..+.-+...|.+.|+
T Consensus 176 ~~~~~~~l~~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 215 (291)
T 3l49_A 176 YSNVTDMLTKYPNEGDVGAIWACWDVPMIGATQALQAAGR 215 (291)
T ss_dssp HHHHHHHHHHCCSTTSCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCcCCcCEEEECCCchHHHHHHHHHHcCC
Confidence 3445555554311115788999999999999999999887
No 434
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=39.41 E-value=13 Score=36.34 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChHHHHH
Q 003924 61 ADVVAMARTGSGKTAAF 77 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~af 77 (786)
..+.+.|++|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45889999999999853
No 435
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=39.40 E-value=14 Score=34.55 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=14.4
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
.+++.|+.|||||...-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58999999999998543
No 436
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=39.33 E-value=13 Score=34.41 Aligned_cols=17 Identities=18% Similarity=0.257 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q 003924 61 ADVVAMARTGSGKTAAF 77 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~af 77 (786)
+-+++.|++|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35899999999999854
No 437
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=38.94 E-value=22 Score=29.66 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=31.3
Q ss_pred cCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCC
Q 003924 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (786)
Q Consensus 264 ~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~ 301 (786)
.. .+++|+|.+-..+...+..|...|+.+..+.|++.
T Consensus 52 ~~-~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 52 PR-RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp CS-SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CC-CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 45 78999999988899999999999999777778764
No 438
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=38.94 E-value=17 Score=38.08 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=21.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCc
Q 003924 63 VVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPT 102 (786)
Q Consensus 63 vvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~Pt 102 (786)
+++.|+.|||||...- .+..+. .+.++.||.|.
T Consensus 7 ~~i~G~~GaGKTTll~--~l~~~~-----~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLR--HILNEQ-----HGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHHHH--HHHHSC-----CCCCEEEECSS
T ss_pred EEEEecCCCCHHHHHH--HHHhhc-----CCCcEEEEEec
Confidence 6889999999998432 222221 35567777774
No 439
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=38.87 E-value=14 Score=34.88 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
..+++.|++|||||...-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358999999999998543
No 440
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=38.83 E-value=12 Score=36.11 Aligned_cols=17 Identities=29% Similarity=0.157 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCChHHHH
Q 003924 60 GADVVAMARTGSGKTAA 76 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~a 76 (786)
+.-+.+.|++|||||..
T Consensus 6 ~~~i~i~G~~GsGKSTl 22 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTL 22 (211)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred cEEEEEECCCCCCHHHH
Confidence 44578999999999974
No 441
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=38.74 E-value=17 Score=30.75 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=32.4
Q ss_pred cCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCCC
Q 003924 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDMD 301 (786)
Q Consensus 264 ~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l~ 301 (786)
....+++|+|.+-..+...+..|...|+.+..+.|++.
T Consensus 54 ~~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 54 NDNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp CTTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 45678999999998999999999999998888888753
No 442
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=38.69 E-value=15 Score=35.15 Aligned_cols=19 Identities=37% Similarity=0.323 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~af 77 (786)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3566899999999999853
No 443
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=38.65 E-value=11 Score=36.15 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.5
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~af 77 (786)
.+.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3556899999999999853
No 444
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=38.65 E-value=15 Score=35.73 Aligned_cols=19 Identities=32% Similarity=0.205 Sum_probs=15.5
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afl 78 (786)
|.-+.+.||+|||||..+.
T Consensus 25 G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568899999999997544
No 445
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=38.64 E-value=13 Score=36.54 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCChHHHHH
Q 003924 60 GADVVAMARTGSGKTAAF 77 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~af 77 (786)
..-+++.|++|||||...
T Consensus 7 ~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999854
No 446
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=38.60 E-value=14 Score=35.98 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.0
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37899999999998543
No 447
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=38.58 E-value=11 Score=36.57 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCChHHHH
Q 003924 60 GADVVAMARTGSGKTAA 76 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~a 76 (786)
|.-+.+.||+|||||..
T Consensus 22 g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTL 38 (208)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 44578999999999974
No 448
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=38.57 E-value=13 Score=37.86 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=30.9
Q ss_pred CCCCccCCCCCHHHHHHHHHCCCCCChHHH-HHHHHHHH--cCCcEEEEcCCCChHHHHH
Q 003924 21 KSGGFESLNLSPNVFRAIKRKGYKVPTPIQ-RKTMPLIL--SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 21 ~~~~f~~lgLs~~ll~~l~~~g~~~ptpiQ-~~aip~il--~g~dvvl~a~TGSGKT~af 77 (786)
..-+|+++...+.+...+...-.. +. ...+..+- -.+.+++.||+|+|||..+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~----~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF----LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH----HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH----HHCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 346788887777777666543110 00 11111110 1234999999999999753
No 449
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=38.47 E-value=12 Score=38.76 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-++++|++|||||...
T Consensus 35 livl~G~sGsGKSTla 50 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999754
No 450
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=38.28 E-value=17 Score=30.96 Aligned_cols=37 Identities=11% Similarity=0.154 Sum_probs=32.0
Q ss_pred cCCCcEEEEEcchhhHHHHHHHHHHcCCCceeecCCC
Q 003924 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLEPSVCYGDM 300 (786)
Q Consensus 264 ~~~~k~IVF~~t~~~ae~l~~~L~~~g~~v~~lhg~l 300 (786)
....+++|||.+-..+...+..|...|+.+..+.|++
T Consensus 54 ~~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 54 NKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp CTTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 4567899999998889999999999999888888875
No 451
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=38.06 E-value=18 Score=33.87 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-.++.|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4789999999999753
No 452
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=37.91 E-value=46 Score=38.93 Aligned_cols=74 Identities=15% Similarity=0.081 Sum_probs=51.6
Q ss_pred CeEEEEEcCcHHHHHHHHHHHHHHccC-----------------------------CCCeEEEEEcCCChhHHHHHH---
Q 003924 93 GVRALILSPTRDLALQTLKFTKELGRY-----------------------------TDLRISLLVGGDSMESQFEEL--- 140 (786)
Q Consensus 93 g~r~LIL~PtreLa~Q~~~~l~~l~~~-----------------------------~~l~v~~l~gg~~~~~~~~~l--- 140 (786)
+.++||.||++.-+..++..+...... ....+..++||.+.+++....
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 567999999999999999887764211 112488889998877654332
Q ss_pred -cCCCCEEEECcHHHHHHHhhccCCCCCceeeEE
Q 003924 141 -AQNPDIIIATPGRLMHHLSEVEDMSLKSVEYVV 173 (786)
Q Consensus 141 -~~~~dIiV~Tpgrll~~l~~~~~l~l~~l~~vV 173 (786)
.+...|+|||.- +. ..+++..+.+||
T Consensus 317 ~~g~~~vlvaT~~-----l~--~Gvdip~~~~VI 343 (720)
T 2zj8_A 317 RKGIIKAVVATPT-----LS--AGINTPAFRVII 343 (720)
T ss_dssp HTTSSCEEEECST-----TG--GGCCCCBSEEEE
T ss_pred HCCCCeEEEECcH-----hh--ccCCCCceEEEE
Confidence 356789999952 22 267788887654
No 453
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=37.86 E-value=44 Score=30.44 Aligned_cols=38 Identities=5% Similarity=0.111 Sum_probs=30.6
Q ss_pred cCCCcEEEEEcchhhHHHHHHHHHHcCCC-ceeecCCCC
Q 003924 264 SSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMD 301 (786)
Q Consensus 264 ~~~~k~IVF~~t~~~ae~l~~~L~~~g~~-v~~lhg~l~ 301 (786)
....++||||.+-..+...+..|...|+. +..+.|++.
T Consensus 78 ~~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 78 QHERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp ---CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 45678999999988889999999999995 778888874
No 454
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=37.82 E-value=14 Score=35.36 Aligned_cols=16 Identities=19% Similarity=0.393 Sum_probs=13.8
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-+++.|+.|||||...
T Consensus 17 ~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999854
No 455
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=37.56 E-value=13 Score=34.83 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~af 77 (786)
.|.-+++.|+.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3556889999999999753
No 456
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=37.50 E-value=52 Score=34.61 Aligned_cols=15 Identities=13% Similarity=0.175 Sum_probs=12.9
Q ss_pred EEEEcCCCChHHHHH
Q 003924 63 VVAMARTGSGKTAAF 77 (786)
Q Consensus 63 vvl~a~TGSGKT~af 77 (786)
+.+.|++|||||..+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999753
No 457
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=37.39 E-value=29 Score=42.62 Aligned_cols=64 Identities=17% Similarity=0.299 Sum_probs=42.3
Q ss_pred CCCccCCC-C-CHHHHHHHHHCCCCC--C--hHHHHHHHHHHHc---CCcEEEEcCCCChHHHHHHHHHHHHHh
Q 003924 22 SGGFESLN-L-SPNVFRAIKRKGYKV--P--TPIQRKTMPLILS---GADVVAMARTGSGKTAAFLVPMLQRLN 86 (786)
Q Consensus 22 ~~~f~~lg-L-s~~ll~~l~~~g~~~--p--tpiQ~~aip~il~---g~dvvl~a~TGSGKT~afllpile~L~ 86 (786)
-++|..|+ | ++.++.......... | ..+=..|+..++. .+.+|+.|.+|||||.+.=. +++.|.
T Consensus 97 VNPyk~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~-im~yLa 169 (1052)
T 4anj_A 97 VNPYFDIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKF-VLRYLT 169 (1052)
T ss_dssp ECCSSCCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred ECCCCCccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHH-HHHHHH
Confidence 47888885 4 788888877654433 3 3344556665553 35699999999999987543 334443
No 458
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=37.32 E-value=14 Score=39.77 Aligned_cols=16 Identities=38% Similarity=0.630 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-.++.|+||+|||..+
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999853
No 459
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=37.29 E-value=15 Score=38.32 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=15.3
Q ss_pred CCcEEEEcCCCChHHHHH
Q 003924 60 GADVVAMARTGSGKTAAF 77 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~af 77 (786)
...+++.||+|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 456999999999999754
No 460
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=37.27 E-value=30 Score=32.85 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=12.9
Q ss_pred cEEEEcCCCChHHHH
Q 003924 62 DVVAMARTGSGKTAA 76 (786)
Q Consensus 62 dvvl~a~TGSGKT~a 76 (786)
-+++.|+.|||||..
T Consensus 8 ~i~i~G~sGsGKTTl 22 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL 22 (174)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEEeCCCCCHHHH
Confidence 478999999999964
No 461
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=37.26 E-value=15 Score=35.05 Aligned_cols=15 Identities=20% Similarity=0.525 Sum_probs=13.1
Q ss_pred cEEEEcCCCChHHHH
Q 003924 62 DVVAMARTGSGKTAA 76 (786)
Q Consensus 62 dvvl~a~TGSGKT~a 76 (786)
-+++.|++|||||..
T Consensus 2 ~I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 378999999999974
No 462
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=37.16 E-value=15 Score=35.42 Aligned_cols=16 Identities=38% Similarity=0.252 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-+.+.|+.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999853
No 463
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=37.15 E-value=15 Score=35.29 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChHHHHH
Q 003924 61 ADVVAMARTGSGKTAAF 77 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~af 77 (786)
.-+++.|++|||||...
T Consensus 21 ~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34889999999999854
No 464
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=37.11 E-value=14 Score=36.03 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
..+++.|++|||||...-
T Consensus 6 ~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCE 23 (222)
T ss_dssp CCEEEEESTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998543
No 465
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=37.06 E-value=23 Score=37.93 Aligned_cols=16 Identities=25% Similarity=0.513 Sum_probs=13.4
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-+.+.|++|||||...
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 3778999999999853
No 466
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=37.06 E-value=68 Score=38.50 Aligned_cols=54 Identities=17% Similarity=0.131 Sum_probs=42.1
Q ss_pred CCCcEEEEEcchhhHHHHHHHH----HHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEec
Q 003924 265 SDQQTLIFVSTKHHVEFLNVLF----REEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTD 324 (786)
Q Consensus 265 ~~~k~IVF~~t~~~ae~l~~~L----~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTd 324 (786)
.+.+++|.++|..-|...++.+ ...|+.+.+++|+++...|.... .++|+++|+
T Consensus 151 ~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTp 208 (922)
T 1nkt_A 151 AGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTN 208 (922)
T ss_dssp TTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEH
T ss_pred hCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECc
Confidence 3568999999998887665544 45699999999999987665443 378999996
No 467
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=37.01 E-value=15 Score=33.87 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3789999999999854
No 468
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=36.91 E-value=15 Score=35.47 Aligned_cols=18 Identities=28% Similarity=0.065 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCChHHHHH
Q 003924 60 GADVVAMARTGSGKTAAF 77 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~af 77 (786)
+.-+.+.|++|||||...
T Consensus 21 ~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445889999999999743
No 469
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=36.88 E-value=64 Score=38.86 Aligned_cols=55 Identities=13% Similarity=0.020 Sum_probs=42.8
Q ss_pred CCCcEEEEEcchhhHHHHHHHH----HHcCCCceeecCCCCHHHHHHHHHHHhcCCcEEEEEecc
Q 003924 265 SDQQTLIFVSTKHHVEFLNVLF----REEGLEPSVCYGDMDQDARKIHVSRFRARKTMFLIVTDV 325 (786)
Q Consensus 265 ~~~k~IVF~~t~~~ae~l~~~L----~~~g~~v~~lhg~l~q~~R~~~l~~F~~g~~~ILVaTdv 325 (786)
.+.+++|.++|..-|...+..+ ...|+.+.+++|+++...|.... .++|+++|+-
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 4678999999998777665544 45699999999999987766543 3799999964
No 470
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=36.78 E-value=15 Score=35.28 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=13.5
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
.+++.|++|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999853
No 471
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=36.77 E-value=16 Score=35.61 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHHH
Q 003924 60 GADVVAMARTGSGKTAAF 77 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~af 77 (786)
+..+++.|++|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 346899999999999854
No 472
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=36.67 E-value=19 Score=37.91 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=14.8
Q ss_pred CcEEEEcCCCChHHHHH
Q 003924 61 ADVVAMARTGSGKTAAF 77 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~af 77 (786)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999754
No 473
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=35.98 E-value=42 Score=40.90 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=56.6
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCChhHHHH---HHcCC---CCEEEECcHHHHHHHhhccCCC
Q 003924 92 GGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDSMESQFE---ELAQN---PDIIIATPGRLMHHLSEVEDMS 165 (786)
Q Consensus 92 ~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~~~~~~~---~l~~~---~dIiV~Tpgrll~~l~~~~~l~ 165 (786)
.+.++||+|+++.-+..+.+.+.. ..++.+..++|+.+..+... .+..+ ++|+|+|. . +. ..++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~---~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-v----~~--~GlD 571 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRE---REGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-I----GS--EGRN 571 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHT---TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-C----TT--CSSC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHH---HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-h----hh--cCCC
Confidence 466899999999998888877764 23688999999877654433 33333 89999993 2 22 3788
Q ss_pred CCceeeEEeCCcc
Q 003924 166 LKSVEYVVFDEAD 178 (786)
Q Consensus 166 l~~l~~vV~DEah 178 (786)
+..+.+||+-+.+
T Consensus 572 l~~~~~VI~~d~p 584 (968)
T 3dmq_A 572 FQFASHMVMFDLP 584 (968)
T ss_dssp CTTCCEEECSSCC
T ss_pred cccCcEEEEecCC
Confidence 9999999987765
No 474
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=35.67 E-value=2.8e+02 Score=27.24 Aligned_cols=27 Identities=11% Similarity=0.022 Sum_probs=21.5
Q ss_pred CCcEEEEEcchhhHHHHHHHHHHcCCC
Q 003924 266 DQQTLIFVSTKHHVEFLNVLFREEGLE 292 (786)
Q Consensus 266 ~~k~IVF~~t~~~ae~l~~~L~~~g~~ 292 (786)
.....|||.+-..+.-+...|.+.|+.
T Consensus 191 ~~~~ai~~~~d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 191 QPPTAIMATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred CCCcEEEEcChHHHHHHHHHHHHhCCC
Confidence 456788999888888888888887654
No 475
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=35.60 E-value=20 Score=34.07 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=13.0
Q ss_pred cEEEEcCCCChHHHH
Q 003924 62 DVVAMARTGSGKTAA 76 (786)
Q Consensus 62 dvvl~a~TGSGKT~a 76 (786)
.+.+.||.|||||..
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999974
No 476
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=35.58 E-value=31 Score=31.42 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=32.7
Q ss_pred hccCCCcEEEEEcchhhHHHHHHHHHHcCCC-ceeecCCCC
Q 003924 262 HISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMD 301 (786)
Q Consensus 262 ~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~-v~~lhg~l~ 301 (786)
.+....++||||.+-..+..++..|...|+. +..+.|++.
T Consensus 52 ~l~~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~ 92 (141)
T 3ilm_A 52 SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 92 (141)
T ss_dssp TSCTTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHH
T ss_pred cCCCCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHH
Confidence 4556778999999988999999999999996 667777653
No 477
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=35.55 E-value=16 Score=34.36 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=13.1
Q ss_pred EEEEcCCCChHHHHH
Q 003924 63 VVAMARTGSGKTAAF 77 (786)
Q Consensus 63 vvl~a~TGSGKT~af 77 (786)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 789999999999753
No 478
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=35.49 E-value=15 Score=34.71 Aligned_cols=19 Identities=37% Similarity=0.310 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHHH
Q 003924 60 GADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~afl 78 (786)
+.-+++.|+.|||||...-
T Consensus 13 ~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4568899999999998543
No 479
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=35.31 E-value=27 Score=31.16 Aligned_cols=39 Identities=5% Similarity=0.009 Sum_probs=32.9
Q ss_pred ccCCCcEEEEEcchhhHHHHHHHHHHcCCC-ceeecCCCC
Q 003924 263 ISSDQQTLIFVSTKHHVEFLNVLFREEGLE-PSVCYGDMD 301 (786)
Q Consensus 263 ~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~-v~~lhg~l~ 301 (786)
+....++||||.+-..+..++..|...|+. +..+.|++.
T Consensus 79 l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 79 FGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp CCTTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 456778999999988899999999999996 777888864
No 480
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=35.10 E-value=15 Score=34.94 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.2
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-+.+.|++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999753
No 481
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=35.06 E-value=18 Score=34.81 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~af 77 (786)
.+.-+++.|+.|||||...
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 3566899999999999853
No 482
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=34.47 E-value=18 Score=36.10 Aligned_cols=17 Identities=41% Similarity=0.589 Sum_probs=14.7
Q ss_pred cCCcEEEEcCCCChHHH
Q 003924 59 SGADVVAMARTGSGKTA 75 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~ 75 (786)
.|.-+.+.||.|||||.
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 45668899999999997
No 483
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=34.35 E-value=19 Score=34.66 Aligned_cols=19 Identities=26% Similarity=0.275 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCChHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAF 77 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~af 77 (786)
.+.-+++.|+.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3566999999999999853
No 484
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=34.18 E-value=17 Score=35.27 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
.+++.|++|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 485
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=34.03 E-value=25 Score=33.89 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=27.2
Q ss_pred CCceeeEEeCCcccc--ccCChHHHHHHHHhhcccCCceEEEeccCc
Q 003924 166 LKSVEYVVFDEADCL--FGMGFAEQLHKILGQLSENRQTLLFSATLP 210 (786)
Q Consensus 166 l~~l~~vV~DEah~l--~~~gf~~~l~~Il~~l~~~~q~ll~SATl~ 210 (786)
....+++|+||+..+ .+..|...+..++.. ...+|+.++|.|
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecC
Confidence 466789999998777 344466666666653 333555577753
No 486
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=34.00 E-value=17 Score=34.54 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=13.6
Q ss_pred cEEEEcCCCChHHHHH
Q 003924 62 DVVAMARTGSGKTAAF 77 (786)
Q Consensus 62 dvvl~a~TGSGKT~af 77 (786)
-+.+.|++|||||.+.
T Consensus 10 ~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3789999999999854
No 487
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=34.00 E-value=32 Score=36.15 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.7
Q ss_pred cEEEEcCCCChHHHHHH
Q 003924 62 DVVAMARTGSGKTAAFL 78 (786)
Q Consensus 62 dvvl~a~TGSGKT~afl 78 (786)
-+++.+++|+|||....
T Consensus 107 vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37788999999997644
No 488
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=34.00 E-value=18 Score=34.22 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=13.1
Q ss_pred EEEEcCCCChHHHHH
Q 003924 63 VVAMARTGSGKTAAF 77 (786)
Q Consensus 63 vvl~a~TGSGKT~af 77 (786)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999854
No 489
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=33.97 E-value=3.9e+02 Score=27.17 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCC
Q 003924 252 HAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE 292 (786)
Q Consensus 252 ~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~ 292 (786)
...+..+|... .....|||.+-..+.-+...|.+.|+.
T Consensus 193 ~~~~~~~L~~~---~~~~aI~~~~d~~a~g~~~al~~~G~~ 230 (350)
T 3h75_A 193 YRQAQQLLKRY---PKTQLVWSANDEMALGAMQAARELGRK 230 (350)
T ss_dssp HHHHHHHHHHC---TTEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhC---CCcCEEEECChHHHHHHHHHHHHcCCC
Confidence 34455555543 457889999999999999999998875
No 490
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=33.73 E-value=18 Score=36.11 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCChHHHHH
Q 003924 60 GADVVAMARTGSGKTAAF 77 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~af 77 (786)
+.-+++.|+.|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 456899999999999743
No 491
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=33.38 E-value=87 Score=35.41 Aligned_cols=80 Identities=8% Similarity=0.136 Sum_probs=50.0
Q ss_pred CCeEEEEEcCcHHHHHHHHHHHHHHccC----CCCeEEEEEcCCCh--hHHHHHHcC-C--CC-EEEECcHHHHHHHhhc
Q 003924 92 GGVRALILSPTRDLALQTLKFTKELGRY----TDLRISLLVGGDSM--ESQFEELAQ-N--PD-IIIATPGRLMHHLSEV 161 (786)
Q Consensus 92 ~g~r~LIL~PtreLa~Q~~~~l~~l~~~----~~l~v~~l~gg~~~--~~~~~~l~~-~--~d-IiV~Tpgrll~~l~~~ 161 (786)
.+.++||.|+++.-|..+++.+...+.. .+-.+..++|.... ......+.. . .. |+|+|. ++.
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l~-- 510 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LLT-- 510 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TTT--
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hhh--
Confidence 4568999999999999999988876421 12235556665432 122233332 2 22 666662 222
Q ss_pred cCCCCCceeeEEeCCcc
Q 003924 162 EDMSLKSVEYVVFDEAD 178 (786)
Q Consensus 162 ~~l~l~~l~~vV~DEah 178 (786)
..+++..+.+||++..-
T Consensus 511 ~GiDip~v~~Vi~~~~~ 527 (590)
T 3h1t_A 511 TGVDAPTCKNVVLARVV 527 (590)
T ss_dssp TTCCCTTEEEEEEESCC
T ss_pred cCccchheeEEEEEecC
Confidence 37899999999986553
No 492
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=33.35 E-value=18 Score=36.58 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChHHHHH
Q 003924 61 ADVVAMARTGSGKTAAF 77 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~af 77 (786)
.-++++|++|||||...
T Consensus 5 ~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFS 21 (260)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEEcCCCCCHHHHH
Confidence 35889999999999854
No 493
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=33.22 E-value=14 Score=34.57 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=11.7
Q ss_pred cCCcEEEEcCCCChHHHHHH
Q 003924 59 SGADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 59 ~g~dvvl~a~TGSGKT~afl 78 (786)
.+.-+++.|+.|||||...-
T Consensus 4 ~~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp -CCEEEEECCC----CHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34568999999999998543
No 494
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=33.17 E-value=51 Score=35.17 Aligned_cols=32 Identities=13% Similarity=0.155 Sum_probs=19.1
Q ss_pred EEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEc
Q 003924 64 VAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILS 100 (786)
Q Consensus 64 vl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~ 100 (786)
|..+.-|.|||.+.+..+. .|.. .|.++|+|=
T Consensus 148 v~s~KGGvGKTT~a~nLA~-~La~----~g~rVlliD 179 (373)
T 3fkq_A 148 FTSPCGGVGTSTVAAACAI-AHAN----MGKKVFYLN 179 (373)
T ss_dssp EECSSTTSSHHHHHHHHHH-HHHH----HTCCEEEEE
T ss_pred EECCCCCChHHHHHHHHHH-HHHh----CCCCEEEEE
Confidence 3445889999986554333 2222 255677764
No 495
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=33.06 E-value=15 Score=34.28 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCChHHHH
Q 003924 48 PIQRKTMPLILSGADVVAMARTGSGKTAA 76 (786)
Q Consensus 48 piQ~~aip~il~g~dvvl~a~TGSGKT~a 76 (786)
+.+...-+.-...-.+++.|++|+|||..
T Consensus 9 ~~~~~~~~~~~~~~~i~v~G~~~~GKSsl 37 (181)
T 2h17_A 9 HHSSGLVPRGSQEHKVIIVGLDNAGKTTI 37 (181)
T ss_dssp ------------CEEEEEEEETTSSHHHH
T ss_pred cccCCccCCCCceeEEEEECCCCCCHHHH
Confidence 33444444444455799999999999974
No 496
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=33.00 E-value=4.3e+02 Score=27.34 Aligned_cols=110 Identities=15% Similarity=0.200 Sum_probs=56.0
Q ss_pred HHHHHHcCCcEEEEcCCCChHHHHHHHHHHHHHhhcCCCCCeEEEEEcCcHHHHHHHHHHHHHHccCCCCeEEEEEcCCC
Q 003924 53 TMPLILSGADVVAMARTGSGKTAAFLVPMLQRLNQHVPQGGVRALILSPTRDLALQTLKFTKELGRYTDLRISLLVGGDS 132 (786)
Q Consensus 53 aip~il~g~dvvl~a~TGSGKT~afllpile~L~~~~~~~g~r~LIL~PtreLa~Q~~~~l~~l~~~~~l~v~~l~gg~~ 132 (786)
.+-.++...+.++. ++| |.+..+ ++..+. ..+..+|+..|+..-... .+..+....+..+..+-. .+
T Consensus 60 ~la~~~~~~~~i~~---~sG-t~a~~~-~~~~~~----~~g~~vl~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~d 126 (386)
T 1cs1_A 60 ALAELEGGAGAVLT---NTG-MSAIHL-VTTVFL----KPGDLLVAPHDCYGGSYR---LFDSLAKRGCYRVLFVDQ-GD 126 (386)
T ss_dssp HHHHHHTCSEEEEE---SSH-HHHHHH-HHHHHC----CTTCEEEEETTCCHHHHH---HHHHHHTTTSCEEEEECT-TC
T ss_pred HHHHHhCCCcEEEe---CCH-HHHHHH-HHHHHh----CCCCEEEEecCCcHhHHH---HHHHHHHhcCCEEEEeCC-CC
Confidence 33344444455554 678 765433 333332 235678888887643222 233333445666655432 34
Q ss_pred hhHHHHHHcCCCCEEE-ECcH----------HHHHHHhhccCCCCCceeeEEeCCcccccc
Q 003924 133 MESQFEELAQNPDIII-ATPG----------RLMHHLSEVEDMSLKSVEYVVFDEADCLFG 182 (786)
Q Consensus 133 ~~~~~~~l~~~~dIiV-~Tpg----------rll~~l~~~~~l~l~~l~~vV~DEah~l~~ 182 (786)
.+.....+..++.+|+ ++|. .+..+..+. . -+||+||+|..+.
T Consensus 127 ~~~l~~~i~~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~-~------~~li~De~~~~~~ 180 (386)
T 1cs1_A 127 EQALRAALAEKPKLVLVESPSNPLLRVVDIAKICHLAREV-G------AVSVVDNTFLSPA 180 (386)
T ss_dssp HHHHHHHHHTCCSEEEEECSCTTTCCCCCHHHHHHHHHHT-T------CEEEEECTTTCTT
T ss_pred HHHHHHhhccCCcEEEEeCCCCCCCcccCHHHHHHHHHHc-C------CEEEEECCCcccc
Confidence 4444445555555554 4442 233333331 1 2799999997553
No 497
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=32.79 E-value=24 Score=34.56 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.3
Q ss_pred EEEEcCCCChHHHHHH
Q 003924 63 VVAMARTGSGKTAAFL 78 (786)
Q Consensus 63 vvl~a~TGSGKT~afl 78 (786)
+++.||+||||+..+-
T Consensus 3 Iil~GpPGsGKgTqa~ 18 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAK 18 (206)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999997543
No 498
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=32.74 E-value=2.5e+02 Score=28.24 Aligned_cols=42 Identities=5% Similarity=-0.009 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhccCCCcEEEEEcchhhHHHHHHHHHHcCCC
Q 003924 251 KHAALLYMIREHISSDQQTLIFVSTKHHVEFLNVLFREEGLE 292 (786)
Q Consensus 251 k~~~Ll~lL~~~~~~~~k~IVF~~t~~~ae~l~~~L~~~g~~ 292 (786)
-...+..+|..+......+.|||.+-..+.-+...|.+.|+.
T Consensus 188 ~~~~~~~~l~~~~~~~~~~ai~~~nd~~A~g~~~al~~~g~~ 229 (330)
T 3uug_A 188 AQARMDNLLSAYYTDAKVDAVLSPYDGLSIGIISSLKGVGYG 229 (330)
T ss_dssp HHHHHHHHHHHHCSSSCCCEEECSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhcCCCCCeEEEEECCCchHHHHHHHHHHcCCC
Confidence 344455556543223567889999999999999999999886
No 499
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=32.30 E-value=23 Score=39.32 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=15.4
Q ss_pred CcEEEEcCCCChHHHHHH
Q 003924 61 ADVVAMARTGSGKTAAFL 78 (786)
Q Consensus 61 ~dvvl~a~TGSGKT~afl 78 (786)
.++++.||+|+|||...-
T Consensus 202 ~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CEEEEESCTTTTTHHHHH
T ss_pred CCeEEECCCCCCHHHHHH
Confidence 579999999999998643
No 500
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=32.12 E-value=20 Score=39.66 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCChHHHHH
Q 003924 60 GADVVAMARTGSGKTAAF 77 (786)
Q Consensus 60 g~dvvl~a~TGSGKT~af 77 (786)
.+.+++.||+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 367999999999999854
Done!