BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003927
(786 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 742
Score = 413 bits (1061), Expect = e-115, Method: Compositional matrix adjust.
Identities = 245/708 (34%), Positives = 393/708 (55%), Gaps = 42/708 (5%)
Query: 87 VYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFM-LRELVKRWSN 145
+Y+ + N+C+ H S LY + R++ E+++ + +LP + D + L+++ W +
Sbjct: 69 LYQAVENLCS----HKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQD 124
Query: 146 HKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYTE--LNGKVRDAVITLID 202
H + + F +LDR ++ + S LP + ++GL FR + ++ + K D ++ LI+
Sbjct: 125 HCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIE 184
Query: 203 QEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSC 262
+ER GE +DR+LL+++L + + + Y++ FE L++T Y+ + + E
Sbjct: 185 RERSGEAVDRSLLRSLLGM-----LSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREV 239
Query: 263 PDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRD 322
P+Y+ + L+ E DRV YL S++ L+ V+ +LL + +L+K G LL +
Sbjct: 240 PEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQK---GLDHLLDE 296
Query: 323 DKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQ 382
++V DL++M++LFS++ G + + +++ GTA+V E +
Sbjct: 297 NRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPE----------------K 340
Query: 383 EQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDN 442
++ V+ +++ DK + CFQ + F +KE+FE F NK + AEL+A D+
Sbjct: 341 DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINK--RPNKPAELIAKHVDS 398
Query: 443 ILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERS 502
L+ G E +DE +E L+K++ L +I KD+F FY+K LA+RLL KSA+ D E+S
Sbjct: 399 KLRAGNKEA-TDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKS 457
Query: 503 ILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFW 562
+L+KLK +CG FTSK+EGM D+ L+++ F++++ N ++ P IDLTV +LT G+W
Sbjct: 458 MLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGP-IDLTVNILTMGYW 516
Query: 563 PSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTT 622
P+Y +++L EM+K EVF+ FY K RKL W +LG L +F+ E V+
Sbjct: 517 PTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSL 576
Query: 623 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDH 682
+Q LL+FN D S+ EI + D ++ R L SL+C K ++L K P K + D
Sbjct: 577 FQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDK 636
Query: 683 FEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQ 738
F FN +F K+ RIKI R+Y IDA+IVRIMK RK LGH
Sbjct: 637 FIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHN 696
Query: 739 QLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 786
LV E QL KP +KKRIE LI RDY+ERDK NPN + Y+A
Sbjct: 697 LLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMERDKDNPNQYHYVA 742
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 759
Score = 412 bits (1060), Expect = e-115, Method: Compositional matrix adjust.
Identities = 245/708 (34%), Positives = 393/708 (55%), Gaps = 42/708 (5%)
Query: 87 VYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFM-LRELVKRWSN 145
+Y+ + N+C+ H S LY + R++ E+++ + +LP + D + L+++ W +
Sbjct: 86 LYQAVENLCS----HKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQD 141
Query: 146 HKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYTE--LNGKVRDAVITLID 202
H + + F +LDR ++ + S LP + ++GL FR + ++ + K D ++ LI+
Sbjct: 142 HCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIE 201
Query: 203 QEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSC 262
+ER GE +DR+LL+++L + + + Y++ FE L++T Y+ + + E
Sbjct: 202 RERSGEAVDRSLLRSLLGM-----LSDLQVYKDSFELKFLEETNCLYAAEGQRLMQEREV 256
Query: 263 PDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRD 322
P+Y+ + L+ E DRV YL S++ L+ V+ +LL + +L+K G LL +
Sbjct: 257 PEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQK---GLDHLLDE 313
Query: 323 DKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQ 382
++V DL++M++LFS++ G + + +++ GTA+V E +
Sbjct: 314 NRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPE----------------K 357
Query: 383 EQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDN 442
++ V+ +++ DK + CFQ + F +KE+FE F NK + AEL+A D+
Sbjct: 358 DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINK--RPNKPAELIAKHVDS 415
Query: 443 ILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERS 502
L+ G E +DE +E L+K++ L +I KD+F FY+K LA+RLL KSA+ D E+S
Sbjct: 416 KLRAGNKEA-TDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKS 474
Query: 503 ILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFW 562
+L+KLK +CG FTSK+EGM D+ L+++ F++++ N ++ P IDLTV +LT G+W
Sbjct: 475 MLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGP-IDLTVNILTMGYW 533
Query: 563 PSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTT 622
P+Y +++L EM+K EVF+ FY K RKL W +LG L +F+ E V+
Sbjct: 534 PTYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSL 593
Query: 623 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDH 682
+Q LL+FN D S+ EI + D ++ R L SL+C K ++L K P K + D
Sbjct: 594 FQTLVLLMFNEGDGFSFEEIKMATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDK 653
Query: 683 FEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQ 738
F FN +F K+ RIKI R+Y IDA+IVRIMK RK LGH
Sbjct: 654 FIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHN 713
Query: 739 QLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 786
LV E QL KP +KKRIE LI RDY+ERDK NPN + Y+A
Sbjct: 714 LLVSELYNQLKFPVKPG--DLKKRIESLIDRDYMERDKDNPNQYHYVA 759
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex
pdb|4A0C|E Chain E, Structure Of The Cand1-Cul4b-Rbx1 Complex
Length = 741
Score = 389 bits (1000), Expect = e-108, Method: Compositional matrix adjust.
Identities = 243/708 (34%), Positives = 396/708 (55%), Gaps = 42/708 (5%)
Query: 87 VYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFM-LRELVKRWSN 145
+Y+ + N+C+ K S LY + R+ E++I + + + D + L+++ + W N
Sbjct: 68 LYQAVENLCSYK----ISANLYKQLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQN 123
Query: 146 HKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYTE--LNGKVRDAVITLID 202
H + + F +LDR ++ + S LP + ++GL FR + ++ + K D ++ LI+
Sbjct: 124 HCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIE 183
Query: 203 QEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSC 262
+ER GE IDR+LL+++L + ++ + Y++ FE L++T Y+ + + E
Sbjct: 184 RERNGEAIDRSLLRSLLSMLSDLQI-----YQDSFEQRFLEETNRLYAAEGQKLMQEREV 238
Query: 263 PDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRD 322
P+Y+ + L+ E DR+ YL +++ L+ V+ +LL + +L+K G + LL +
Sbjct: 239 PEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLLGEHLTAILQK---GLNNLLDE 295
Query: 323 DKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQ 382
++++DLS +++LFS++ G+ + + +++ A G+ +V E +
Sbjct: 296 NRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPE----------------K 339
Query: 383 EQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDN 442
++ V+++++ DK ++ CF + F ++KEAFE F NK + AEL+A + D+
Sbjct: 340 DKTMVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFETFINK--RPNKPAELIAKYVDS 397
Query: 443 ILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERS 502
L+ G E +DE +E+ML+K++ + +I KD+F FY+K LA+RLL KSA+ D E+S
Sbjct: 398 KLRAGNKEA-TDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKS 456
Query: 503 ILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFW 562
+L+KLK +CG FTSK+EGM D+ L+++ F++Y+ N N I+LTV +LT G+W
Sbjct: 457 MLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQ-NVPGNIELTVNILTMGYW 515
Query: 563 PSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTT 622
P+Y +++LP EMVK E+F+ FY K RKL W +LG C L +F+ EL V+
Sbjct: 516 PTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSL 575
Query: 623 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDH 682
+Q LL+FN + S EI + D ++ R L SL+C K ++L K P K I D
Sbjct: 576 FQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKARVLAKNPKGKDIEDGDK 635
Query: 683 FEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQ 738
F N F K+ RIKI R+Y IDA+IVRIMK RK L H
Sbjct: 636 FICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHN 695
Query: 739 QLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 786
LV E QL KP +KKRIE LI RDY+ERDK NPN + Y+A
Sbjct: 696 LLVSEVYNQLKFPVKP--ADLKKRIESLIDRDYMERDKENPNQYNYIA 741
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|H Chain H, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 726
Score = 389 bits (999), Expect = e-108, Method: Compositional matrix adjust.
Identities = 243/708 (34%), Positives = 396/708 (55%), Gaps = 42/708 (5%)
Query: 87 VYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFM-LRELVKRWSN 145
+Y+ + N+C+ K S LY + R+ E++I + + + D + L+++ + W N
Sbjct: 53 LYQAVENLCSYK----ISANLYKQLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQN 108
Query: 146 HKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYTE--LNGKVRDAVITLID 202
H + + F +LDR ++ + S LP + ++GL FR + ++ + K D ++ LI+
Sbjct: 109 HCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIE 168
Query: 203 QEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILEDSC 262
+ER GE IDR+LL+++L + ++ + Y++ FE L++T Y+ + + E
Sbjct: 169 RERNGEAIDRSLLRSLLSMLSDLQI-----YQDSFEQRFLEETNRLYAAEGQKLMQEREV 223
Query: 263 PDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRD 322
P+Y+ + L+ E DR+ YL +++ L+ V+ +LL + +L+K G + LL +
Sbjct: 224 PEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLLGEHLTAILQK---GLNNLLDE 280
Query: 323 DKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQ 382
++++DLS +++LFS++ G+ + + +++ A G+ +V E +
Sbjct: 281 NRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPE----------------K 324
Query: 383 EQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDN 442
++ V+++++ DK ++ CF + F ++KEAFE F NK + AEL+A + D+
Sbjct: 325 DKTMVQELLDFKDKVDHIIDICFLKNEKFINAMKEAFETFINK--RPNKPAELIAKYVDS 382
Query: 443 ILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERS 502
L+ G E +DE +E+ML+K++ + +I KD+F FY+K LA+RLL KSA+ D E+S
Sbjct: 383 KLRAGNKEA-TDEELEKMLDKIMIIFRFIYGKDVFEAFYKKDLAKRLLVGKSASVDAEKS 441
Query: 503 ILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFW 562
+L+KLK +CG FTSK+EGM D+ L+++ F++Y+ N N I+LTV +LT G+W
Sbjct: 442 MLSKLKHECGAAFTSKLEGMFKDMELSKDIMIQFKQYMQNQ-NVPGNIELTVNILTMGYW 500
Query: 563 PSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTT 622
P+Y +++LP EMVK E+F+ FY K RKL W +LG C L +F+ EL V+
Sbjct: 501 PTYVPMEVHLPPEMVKLQEIFKTFYLGKHSGRKLQWQSTLGHCVLKAEFKEGKKELQVSL 560
Query: 623 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDH 682
+Q LL+FN + S EI + D ++ R L SL+C K ++L K P K I D
Sbjct: 561 FQTLVLLMFNEGEEFSLEEIKQATGIEDGELRRTLQSLACGKARVLAKNPKGKDIEDGDK 620
Query: 683 FEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQ 738
F N F K+ RIKI R+Y IDA+IVRIMK RK L H
Sbjct: 621 FICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHN 680
Query: 739 QLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 786
LV E QL KP +KKRIE LI RDY+ERDK NPN + Y+A
Sbjct: 681 LLVSEVYNQLKFPVKP--ADLKKRIESLIDRDYMERDKENPNQYNYIA 726
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex
Length = 776
Score = 343 bits (881), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 225/711 (31%), Positives = 384/711 (54%), Gaps = 51/711 (7%)
Query: 106 QLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFI 165
+LY + +E + Y+++ +L + DE +L+ ++W +++ + L+ YL+R+++
Sbjct: 87 ELYKRLKEFLKNYLTN-LLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWV 145
Query: 166 ------ARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVL 219
R+ + + + L +RD ++ LN +V +AV+ LI++ER GE I+ L+ V+
Sbjct: 146 RRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVV 205
Query: 220 DIFVEIGMGQMD---------YYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAE 270
+VE+G+ + D Y+ FE+ L DT +Y+R+++ ++ ++ +YM KAE
Sbjct: 206 QSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAE 265
Query: 271 ECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSR 330
L E+ RV YLH S++ +L K + L+ + LE H+ LL DK EDL R
Sbjct: 266 ARLLEEQRRVQVYLHESTQDELARKCEQVLIEKH----LEIFHTEFQNLLDADKNEDLGR 321
Query: 331 MFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKV 390
M+ L S+I GL + + + H+ +G A ++ +AA N +++V+ V
Sbjct: 322 MYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDP-----------KMYVQTV 370
Query: 391 IELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGV------AGSSSAELLATFCDNIL 444
+++H KY A V F N F +L +A F N + S S ELLA +CD++L
Sbjct: 371 LDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLL 430
Query: 445 KKGGSEKLSDEA-IEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSI 503
KK S K +EA +E+ L +V+ + YI DKD+F +FY K LA+RL+ SA+DD E S+
Sbjct: 431 KK--SSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASM 488
Query: 504 LTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWP 563
++KLKQ CG ++TSK++ M D+ ++++ F+++L+N+ + +D ++ VL++G WP
Sbjct: 489 ISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLD--LDFSIQVLSSGSWP 546
Query: 564 SYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGK-FESRTTELIVTT 622
+S LP+E+ + + F FY ++ RKLTW+Y L L+ F++R T L +T
Sbjct: 547 FQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYT-LQAST 605
Query: 623 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKIL---NKEPNTKTISP 679
+Q + LL +N+ D + ++ + D + ++L L +K +L N + + P
Sbjct: 606 FQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANVDEVELKP 665
Query: 680 TDHFEFNSKFTDKMRRIKIPLPPXXXXXXXXXXXXXX----RRYAIDASIVRIMKSRKVL 735
+ + +K R+ I +P R+ I A+IVRIMK RKVL
Sbjct: 666 DTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVL 725
Query: 736 GHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 786
HQQL+ E + QL FKP IKK I+ LI ++YLER + + YLA
Sbjct: 726 KHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 760
Score = 343 bits (879), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 225/711 (31%), Positives = 384/711 (54%), Gaps = 51/711 (7%)
Query: 106 QLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFI 165
+LY + +E + Y+++ +L + DE +L+ ++W +++ + L+ YL+R+++
Sbjct: 71 ELYKRLKEFLKNYLTN-LLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWV 129
Query: 166 ------ARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVL 219
R+ + + + L +RD ++ LN +V +AV+ LI++ER GE I+ L+ V+
Sbjct: 130 RRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVV 189
Query: 220 DIFVEIGMGQMD---------YYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAE 270
+VE+G+ + D Y+ FE+ L DT +Y+R+++ ++ ++ +YM KAE
Sbjct: 190 QSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAE 249
Query: 271 ECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSR 330
L E+ RV YLH S++ +L K + L+ + LE H+ LL DK EDL R
Sbjct: 250 ARLLEEQRRVQVYLHESTQDELARKCEQVLIEKH----LEIFHTEFQNLLDADKNEDLGR 305
Query: 331 MFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKV 390
M+ L S+I GL + + + H+ +G A ++ +AA N +++V+ V
Sbjct: 306 MYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALN-----------DPKMYVQTV 354
Query: 391 IELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGV------AGSSSAELLATFCDNIL 444
+++H KY A V F N F +L +A F N + S S ELLA +CD++L
Sbjct: 355 LDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLL 414
Query: 445 KKGGSEKLSDEA-IEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSI 503
KK S K +EA +E+ L +V+ + YI DKD+F +FY K LA+RL+ SA+DD E S+
Sbjct: 415 KK--SSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASM 472
Query: 504 LTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWP 563
++KLKQ CG ++TSK++ M D+ ++++ F+++L+N+ + +D ++ VL++G WP
Sbjct: 473 ISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLD--LDFSIQVLSSGSWP 530
Query: 564 SYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGK-FESRTTELIVTT 622
+S LP+E+ + + F FY ++ RKLTW+Y L L+ F++R T L +T
Sbjct: 531 FQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYT-LQAST 589
Query: 623 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKIL---NKEPNTKTISP 679
+Q + LL +N+ D + ++ + D + ++L L +K +L N + + P
Sbjct: 590 FQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANVDEVELKP 649
Query: 680 TDHFEFNSKFTDKMRRIKIPLPPXXXXXXXXXXXXXX----RRYAIDASIVRIMKSRKVL 735
+ + +K R+ I +P R+ I A+IVRIMK RKVL
Sbjct: 650 DTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVL 709
Query: 736 GHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 786
HQQL+ E + QL FKP IKK I+ LI ++YLER + + YLA
Sbjct: 710 KHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 366
Score = 206 bits (524), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 129/368 (35%), Positives = 208/368 (56%), Gaps = 14/368 (3%)
Query: 428 AGSSSAELLATFCDNILKKGGSEKLSDEA-IEEMLEKVVKLLAYISDKDLFAEFYRKKLA 486
+ S S ELLA +CD++LKK S K +EA +E+ L +V+ + YI DKD+F +FY K LA
Sbjct: 4 SSSKSPELLARYCDSLLKK--SSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLA 61
Query: 487 RRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNA 546
+RL+ SA+DD E S+++KLKQ CG ++TSK++ M D+ ++++ F+++L+N+
Sbjct: 62 KRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPL 121
Query: 547 NPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCN 606
+ +D ++ VL++G WP +S LP+E+ + + F FY ++ RKLTW+Y L
Sbjct: 122 D--LDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGE 179
Query: 607 LLGK-FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKY 665
L+ F++R T L +T+Q + LL +N+ D + ++ + D + ++L L +K
Sbjct: 180 LVTNCFKNRYT-LQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKL 238
Query: 666 KIL---NKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXXXXXXXXXXXXX----RR 718
+L N + + P + + +K R+ I +P R+
Sbjct: 239 LVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRK 298
Query: 719 YAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSN 778
I A+IVRIMK RKVL HQQL+ E + QL FKP IKK I+ LI ++YLER
Sbjct: 299 LLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGE 358
Query: 779 PNMFRYLA 786
+ + YLA
Sbjct: 359 KDTYSYLA 366
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|C Chain C, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|E Chain E, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
pdb|3RTR|G Chain G, A Ring E3-Substrate Complex Poised For Ubiquitin-Like
Protein Transfer: Structural Insights Into Cullin-Ring
Ligases
Length = 368
Score = 199 bits (507), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 127/368 (34%), Positives = 206/368 (55%), Gaps = 14/368 (3%)
Query: 428 AGSSSAELLATFCDNILKKGGSEKLSDEA-IEEMLEKVVKLLAYISDKDLFAEFYRKKLA 486
+ S S E LA +CD++LKK S K +EA +E+ L +V++ I DKD+F +FY K LA
Sbjct: 6 SSSKSPEELARYCDSLLKK--SSKNPEEAELEDTLNQVMEKFKKIEDKDVFQKFYAKMLA 63
Query: 487 RRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNA 546
+RL+ SA+DD E S+++KLKQ CG ++TSK++ M D+ ++++ F+++L+N+
Sbjct: 64 KRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPL 123
Query: 547 NPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCN 606
+ +D ++ VL++G WP +S LP+E+ + + F FY ++ RKLTW+Y L
Sbjct: 124 D--LDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGE 181
Query: 607 LLGK-FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKY 665
L+ F++R T L +T+Q + LL +N+ D + ++ + D + ++L L +K
Sbjct: 182 LVTNCFKNRYT-LQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKL 240
Query: 666 KIL---NKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXXXXXXXXXX----XXXRR 718
+L N + + P + + +K R+ I +P R+
Sbjct: 241 LVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRK 300
Query: 719 YAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSN 778
I A+IVRIMK RKVL HQQL+ E + QL FKP IKK I+ LI ++YLER
Sbjct: 301 LLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGE 360
Query: 779 PNMFRYLA 786
+ + YLA
Sbjct: 361 KDTYSYLA 368
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
Length = 410
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 181/357 (50%), Gaps = 22/357 (6%)
Query: 83 SKKSVYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKR 142
S + +YR Y M H + ++LY RE E++ + V + + L+ L +
Sbjct: 53 SFEELYRNAYTMVL----HKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQA 108
Query: 143 WSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLV--YTELNGKVRDAVITL 200
W++H+ + + Y+DR ++ + ++ + +GL FRD V Y + +R ++ +
Sbjct: 109 WNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDM 168
Query: 201 IDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILED 260
I +ER+GE +DR ++N + + +G+ YE DFE L+ +A ++ ++ ++ E+
Sbjct: 169 IARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAEN 228
Query: 261 SCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALL 320
S Y+ K E + E +RV H L S+E +++ V+ EL+S + ++E E+SG +L
Sbjct: 229 SASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHML 288
Query: 321 RDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVG 380
++ K EDL M++LFS++P GL + ++ +G ALV +E+ + R G
Sbjct: 289 KNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALV--SEEGEGKNPVDYRQ--G 344
Query: 381 LQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLA 437
L +L ++ ++ + F N LF +++ FE F N S S E LA
Sbjct: 345 LD---------DLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLN---LNSRSPEYLA 389
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 388
Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/357 (27%), Positives = 181/357 (50%), Gaps = 22/357 (6%)
Query: 83 SKKSVYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKR 142
S + +YR Y M H + ++LY RE E++ + V + + L+ L +
Sbjct: 31 SFEELYRNAYTMVL----HKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQA 86
Query: 143 WSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLV--YTELNGKVRDAVITL 200
W++H+ + + Y+DR ++ + ++ + +GL FRD V Y + +R ++ +
Sbjct: 87 WNDHQTAMVMIRDILMYMDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDM 146
Query: 201 IDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILED 260
I +ER+GE +DR ++N + + +G+ YE DFE L+ +A ++ ++ ++ E+
Sbjct: 147 IARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSAEFFQMESQKFLAEN 206
Query: 261 SCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALL 320
S Y+ K E + E +RV H L S+E +++ V+ EL+S + ++E E+SG +L
Sbjct: 207 SASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHML 266
Query: 321 RDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVG 380
++ K EDL M++LFS++P GL + ++ +G ALV +E+ + R G
Sbjct: 267 KNGKTEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALV--SEEGEGKNPVDYRQ--G 322
Query: 381 LQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLA 437
L +L ++ ++ + F N LF +++ FE F N S S E LA
Sbjct: 323 LD---------DLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLN---LNSRSPEYLA 367
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 396
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/334 (28%), Positives = 176/334 (52%), Gaps = 31/334 (9%)
Query: 106 QLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFI 165
+LY + +E + Y+++ +L + DE +L+ ++W +++ + L+ YL+R+++
Sbjct: 73 ELYKRLKEFLKNYLTN-LLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWV 131
Query: 166 ------ARRSLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVL 219
R+ + + + L +RD ++ LN +V +AV+ LI++ER GE I+ L+ V+
Sbjct: 132 RRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVV 191
Query: 220 DIFVEIGMGQMD---------YYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAE 270
+VE+G+ + D Y+ FE+ L DT +Y+R+++ ++ ++ +YM KAE
Sbjct: 192 QSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAE 251
Query: 271 ECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSR 330
L E+ RV YLH S++ +L K + L+ + LE H+ LL DK EDL R
Sbjct: 252 ARLLEEQRRVQVYLHESTQDELARKCEQVLIEKH----LEIFHTEFQNLLDADKNEDLGR 307
Query: 331 MFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKV 390
M+ L S+I GL + + + H+ +G A ++ +AA N +++V+ V
Sbjct: 308 MYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDP-----------KMYVQTV 356
Query: 391 IELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCN 424
+++H KY A V F N F +L +A F N
Sbjct: 357 LDVHKKYNALVMSAFNNDAGFVAALDKACGRFIN 390
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex
pdb|4F52|C Chain C, Structure Of A Glomulin-Rbx1-Cul1 Complex
Length = 282
Score = 146 bits (368), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 161/279 (57%), Gaps = 10/279 (3%)
Query: 428 AGSSSAELLATFCDNILKKGGSEKLSDEA-IEEMLEKVVKLLAYISDKDLFAEFYRKKLA 486
+ S S E LA +CD++LKK S K +EA +E+ L +V++ I DKD+F +FY K LA
Sbjct: 6 SSSKSPEELARYCDSLLKK--SSKNPEEAELEDTLNQVMEKFKKIEDKDVFQKFYAKMLA 63
Query: 487 RRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNA 546
+RL+ SA+DD E S+++KLKQ CG ++TSK++ M D+ ++++ F+++L+N+
Sbjct: 64 KRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPL 123
Query: 547 NPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCN 606
+ +D ++ VL++G WP +S LP+E+ + + F FY ++ RKLTW+Y L
Sbjct: 124 D--LDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGE 181
Query: 607 LLGK-FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKY 665
L+ F++R T L +T+Q + LL +N+ D + ++ + D + ++L L +K
Sbjct: 182 LVTNCFKNRYT-LQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKL 240
Query: 666 KIL---NKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLP 701
+L N + + P + + +K R+ I +P
Sbjct: 241 LVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVP 279
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|D Chain D, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 364
Score = 138 bits (348), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/344 (26%), Positives = 167/344 (48%), Gaps = 19/344 (5%)
Query: 83 SKKSVYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKR 142
S + +YR Y H + ++LY RE E++ + V + + L+ L +
Sbjct: 36 SFEELYRNAYTXVL----HKHGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQA 91
Query: 143 WSNHKVMVRWLSRFFHYLDRYFIARRSLPPLNEVGLTCFRDLV--YTELNGKVRDAVITL 200
W++H+ + Y DR ++ + ++ + +GL FRD V Y + +R ++
Sbjct: 92 WNDHQTAXVXIRDILXYXDRVYVQQNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDX 151
Query: 201 IDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILED 260
I +ER+GE +DR ++N +G+ YE DFE L+ +A ++ ++ ++ E+
Sbjct: 152 IARERKGEVVDRGAIRNACQXLXILGLEGRSVYEEDFEAPFLEXSAEFFQXESQKFLAEN 211
Query: 261 SCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALL 320
S Y+ K E + E +RV H L S+E +++ V+ EL+S + ++E E+SG L
Sbjct: 212 SASVYIKKVEARINEEIERVXHCLDKSTEEPIVKVVERELISKHXKTIVEXENSGLVHXL 271
Query: 321 RDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVG 380
++ K EDL ++LFS++P GL ++ +G ALV +E+ + R G
Sbjct: 272 KNGKTEDLGCXYKLFSRVPNGLKTXCECXSSYLREQGKALV--SEEGEGKNPVDYRQ--G 327
Query: 381 LQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCN 424
L +L ++ ++ + F N LF +++ FE F N
Sbjct: 328 LD---------DLKSRFDRFLLESFNNDRLFKQTIAGDFEYFLN 362
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 382
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 119/385 (30%), Positives = 188/385 (48%), Gaps = 30/385 (7%)
Query: 429 GSSS--AELLATFCDNILKKGG-SEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKL 485
GS S E LA +CD +L+K S+KL+ E IE L++V+K L Y+ +KD+F +++ L
Sbjct: 1 GSESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHL 60
Query: 486 ARRLLFDKSANDDHERSILTKLKQ-QCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNP 544
RRL+ D SA+ + E +++ L++ + +K+ M D+ ++ + +F+E NN
Sbjct: 61 TRRLILDISADSEIEENMVEWLREVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNK 120
Query: 545 NANPGIDLTVTVLTTGFWP--SYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSL 602
A P + + +L G W S K F ++LP E+ + EFY+ RKL W + +
Sbjct: 121 LALPADSVNIKILNAGAWSRSSEKVF-VSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLM 179
Query: 603 GTCNLLGKFESRTTELIVTTYQASALLLFNSSDR--LSYSEIMTQLNLSDDDVVRLLHSL 660
+ K E +L VTT+Q + L +N R +S+ + L D ++ R L SL
Sbjct: 180 SNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSL 239
Query: 661 SC---AKYKILNKEPNTKTISPTDH-----FEFNSKFT-------DKMRRI----KIPLP 701
K ++L EP SP D F N +F+ K +I ++ L
Sbjct: 240 VAFPKLKRQVLLYEPQVN--SPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLT 297
Query: 702 PXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKK 761
R +I++IMK RK + + QL E VE L MF P K IK+
Sbjct: 298 TERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKE 357
Query: 762 RIEDLITRDYLERDKSNPNMFRYLA 786
+IE LI Y+ RD+S+ N F Y+A
Sbjct: 358 QIEWLIEHKYIRRDESDINTFIYMA 382
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|D Chain D, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 382
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 115/382 (30%), Positives = 181/382 (47%), Gaps = 28/382 (7%)
Query: 430 SSSAELLATFCDNILKKGG-SEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARR 488
S E LA +CD +L+K S+KL+ E IE L++V+K L Y+ +KD+F +++ L RR
Sbjct: 4 SKCPEELANYCDXLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFXRYHKAHLTRR 63
Query: 489 LLFDKSANDDHERSILTKLKQ-QCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNAN 547
L+ D SA+ + E + + L++ + +K+ D+ ++ + +F+E NN A
Sbjct: 64 LILDISADSEIEENXVEWLREVGXPADYVNKLARXFQDIKVSEDLNQAFKEXHKNNKLAL 123
Query: 548 PGIDLTVTVLTTGFWP--SYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTC 605
P + + +L G W S K F ++LP E+ + EFY+ RKL W +
Sbjct: 124 PADSVNIKILNAGAWSRSSEKVF-VSLPTELEDLIPEVEEFYKKNHSGRKLHWHHLXSNG 182
Query: 606 NLLGKFESRTTELIVTTYQASALLLFNSSDR--LSYSEIMTQLNLSDDDVVRLLHSLSC- 662
+ K E +L VTT+Q + L +N R +S+ + L D ++ R L SL
Sbjct: 183 IITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAF 242
Query: 663 --AKYKILNKEPNTKTISPTDH-----FEFNSKFT-------DKMRRI----KIPLPPXX 704
K ++L EP SP D F N +F+ K +I ++ L
Sbjct: 243 PKLKRQVLLYEPQVN--SPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTER 300
Query: 705 XXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIE 764
R +I++I K RK + + QL E VE L F P K IK++IE
Sbjct: 301 XREEENEGIVQLRILRTQEAIIQIXKXRKKISNAQLQTELVEILKNXFLPQKKXIKEQIE 360
Query: 765 DLITRDYLERDKSNPNMFRYLA 786
LI Y+ RD+S+ N F Y A
Sbjct: 361 WLIEHKYIRRDESDINTFIYXA 382
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|C Chain C, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
pdb|4A64|D Chain D, Crystal Structure Of The N-Terminal Domain Of Human Cul4b
At 2.57a Resolution
Length = 354
Score = 112 bits (281), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 183/345 (53%), Gaps = 32/345 (9%)
Query: 85 KSVYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFM-LRELVKRW 143
+ +Y+ + N+C+ K S LY + R+ E++I + + + D + L+++ + W
Sbjct: 35 EELYQAVENLCSYK----ISANLYKQLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCW 90
Query: 144 SNHKVMVRWLSRFFHYLDRYFIARRS-LPPLNEVGLTCFRDLVYTE--LNGKVRDAVITL 200
NH + + F +LDR ++ + S LP + ++GL FR + ++ + K D ++ L
Sbjct: 91 QNHCRQMIMIRSIFLFLDRTYVLQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLL 150
Query: 201 IDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTAAYYSRKASNWILED 260
I++ER GE IDR+LL+++L + ++ + Y++ FE L++T Y+ + + E
Sbjct: 151 IERERNGEAIDRSLLRSLLSMLSDLQI-----YQDSFEQRFLEETNRLYAAEGQKLMQER 205
Query: 261 SCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALL 320
P+Y+ + L+ E DR+ YL +++ L+ V+ +LL + +L+K G + LL
Sbjct: 206 EVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLLGEHLTAILQK---GLNNLL 262
Query: 321 RDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVG 380
+++++DLS +++LFS++ G+ + + +++ A G+ +V E
Sbjct: 263 DENRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINPE--------------- 307
Query: 381 LQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNK 425
+++ +++ + DK ++ CF + F ++KEAFE F NK
Sbjct: 308 -KDKTMRQELDDFKDKVDHIIDICFLKNEKFINAMKEAFETFINK 351
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a
Resolution
Length = 391
Score = 86.3 bits (212), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 67/336 (19%), Positives = 150/336 (44%), Gaps = 24/336 (7%)
Query: 104 SQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRY 163
S +++ +E E+I + + D +L+ + W L + F L+
Sbjct: 58 SSKIHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVT 117
Query: 164 FIARRSLPP--------LNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALL 215
+ ++S + ++ L + + +++ + +++D+ + L+ ER GE D L+
Sbjct: 118 LLGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLV 177
Query: 216 KNVLDIFVEIGMG---QMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEEC 272
V + +V + ++ Y ++FE A L T +Y +A +++ ++ +YM A+
Sbjct: 178 IGVRESYVNLCSNPEDKLQIYRDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAK 237
Query: 273 LKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMF 332
LK E+ R YL + E +E + ++ E + C +++ ++ E L MF
Sbjct: 238 LKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETILAECQGMIKRNETEKLHLMF 297
Query: 333 RLFSKIPRGLDPVSNIFKQHVTAEGTA-LVKLAEDAASNKKAEKRDVVGLQEQVFVRKVI 391
L K+P G++P+ ++H+ + G A +V AE ++ +EK + ++
Sbjct: 298 SLMDKVPNGIEPMLKDLEEHIISAGLADMVAAAETITTD--SEK----------YREQLD 345
Query: 392 ELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGV 427
L +++ V + FQ+ F + +A++ N
Sbjct: 346 TLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDAT 381
>pdb|2DO7|A Chain A, Solution Structure Of The Winged Helix-Turn-Helix Motif Of
Human Cul-4b
Length = 101
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 717 RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 776
R+Y IDA+IVRIMK RK L H LV E QL KP +KKRIE LI RDY+ERDK
Sbjct: 28 RQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKP--ADLKKRIESLIDRDYMERDK 85
Query: 777 SNPNMFRYLA 786
NPN + Y+A
Sbjct: 86 ENPNQYNYIA 95
>pdb|3TDU|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDU|D Chain D, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Acetylated Ubc12n Complex
pdb|3TDZ|C Chain C, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
pdb|3TDZ|D Chain D, N-Terminal Acetylation Acts As An Avidity Enhancer Within
An Interconnected Multiprotein Complex: Structure Of A
Human Cul1whb- Dcn1p-Stapled Acetylated Ubc12n Complex
Length = 77
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 45/70 (64%)
Query: 717 RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 776
R+ I A+IVRIMK RKVL HQQL+ E + QL FKP IKK I+ LI ++YLER
Sbjct: 8 RKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVD 67
Query: 777 SNPNMFRYLA 786
+ + YLA
Sbjct: 68 GEKDTYSYLA 77
>pdb|1IUY|A Chain A, Solution Structure Of The Cullin-3 Homologue
Length = 92
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 45/70 (64%)
Query: 717 RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 776
R++ I+A+IVRIMKSRK + H LV E +QL F P IKKRIE LI R+YL R
Sbjct: 23 RKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTP 82
Query: 777 SNPNMFRYLA 786
+ ++ Y+A
Sbjct: 83 EDRKVYTYVA 92
>pdb|3O6B|B Chain B, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|D Chain D, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|F Chain F, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|H Chain H, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
pdb|3O6B|J Chain J, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb) Low Resolution
Length = 76
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 717 RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 776
R+ ++A IVRIMK+++ L H LV EC+ Q + F +K+ I+ LI + YL+R
Sbjct: 8 RQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGD 67
Query: 777 SNPNMFRYLA 786
+ + YLA
Sbjct: 68 DGES-YAYLA 76
>pdb|3O2P|E Chain E, A Dual E3 Mechanism For Rub1 Ligation To Cdc53:
Dcn1(P)-Cdc53(Whb)
Length = 88
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 717 RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 776
R+ ++A IVRIMK+++ L H LV EC+ Q + F +K+ I+ LI + YL+R
Sbjct: 20 RQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGD 79
Query: 777 SNPNMFRYLA 786
+ + YLA
Sbjct: 80 DGES-YAYLA 88
>pdb|2QJ3|A Chain A, Mycobacterium Tuberculosis Fabd
pdb|2QJ3|B Chain B, Mycobacterium Tuberculosis Fabd
Length = 322
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 312 EHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEG--TALVKLAEDAAS 369
E +G A+L D+ E LSR+ +L L P + + A G TAL KLAED +
Sbjct: 147 EPTGMSAVLGGDETEVLSRLEQLD------LVPANRNAAGQIVAAGRLTALEKLAEDPPA 200
Query: 370 NKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCF 405
+ V G H +++A D F
Sbjct: 201 KARVRALGVAG-----------AFHTEFMAPALDGF 225
>pdb|2QC3|A Chain A, Crystal Structure Of Mcat From Mycobacterium Tuberculosis
Length = 303
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 19/96 (19%)
Query: 312 EHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEG--TALVKLAEDAAS 369
E +G A+L D+ E LSR+ +L L P + + A G TAL KLAED +
Sbjct: 128 EPTGMSAVLGGDETEVLSRLEQL------DLVPANRNAAGQIVAAGRLTALEKLAEDPPA 181
Query: 370 NKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCF 405
+ V G H +++A D F
Sbjct: 182 KARVRALGVAG-----------AFHTEFMAPALDGF 206
>pdb|3CW1|A Chain A, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|H Chain H, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|I Chain I, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|J Chain J, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 174
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 730 KSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNP 779
KS K+L H + C+ Q GR+F FKA K + +LI D E K P
Sbjct: 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHM-NLILCDCDEFRKIKP 53
>pdb|3PGW|B Chain B, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|Q Chain Q, Crystal Structure Of Human U1 Snrnp
Length = 231
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 730 KSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNP 779
KS K+L H + C+ Q GR+F FKA K + +LI D E K P
Sbjct: 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHM-NLILCDCDEFRKIKP 53
>pdb|1GGZ|A Chain A, Crystal Structure Of The Calmodulin-Like Protein (Hclp)
From Human Epithelial Cells
Length = 148
Score = 29.6 bits (65), Expect = 7.0, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Query: 413 KSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEML 461
+ ++EAF VF G S+AEL +++ + G EKLSDE ++EM+
Sbjct: 83 EEIREAFRVFDKDGNGFVSAAEL-----RHVMTRLG-EKLSDEEVDEMI 125
>pdb|1QS7|A Chain A, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
pdb|1QS7|C Chain C, The 1.8 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 145
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 413 KSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEK 463
+ LKEAF VF G S+AEL +++ G EKL+DE ++EM+ +
Sbjct: 80 EELKEAFRVFDKDGNGFISAAEL-----RHVMTNLG-EKLTDEEVDEMIRE 124
>pdb|1VRK|A Chain A, The 1.9 Angstrom Structure Of E84k-Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 413 KSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEK 463
+ LKEAF VF G S+AEL +++ G EKL+DE ++EM+ +
Sbjct: 83 EKLKEAFRVFDKDGNGFISAAEL-----RHVMTNLG-EKLTDEEVDEMIRE 127
>pdb|1QTX|A Chain A, The 1.65 Angstrom Structure Of Calmodulin Rs20 Peptide
Complex
Length = 148
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
Query: 413 KSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEK 463
+ LKEAF VF G S+AEL +++ G EKL+DE ++EM+ +
Sbjct: 83 EELKEAFRVFDKDGNGFISAAEL-----RHVMTNLG-EKLTDEEVDEMIRE 127
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,574,055
Number of Sequences: 62578
Number of extensions: 862301
Number of successful extensions: 2783
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2675
Number of HSP's gapped (non-prelim): 39
length of query: 786
length of database: 14,973,337
effective HSP length: 107
effective length of query: 679
effective length of database: 8,277,491
effective search space: 5620416389
effective search space used: 5620416389
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)