Query 003927
Match_columns 786
No_of_seqs 291 out of 1071
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 08:31:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003927.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003927hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ldj_A Cullin homolog 1, CUL-1 100.0 4E-142 1E-146 1272.9 65.2 707 11-786 1-760 (760)
2 2hye_C Cullin-4A, CUL-4A; beta 100.0 6E-137 2E-141 1227.7 66.8 694 9-786 57-759 (759)
3 3dpl_C Cullin-5; ubiquitin, NE 100.0 2.6E-83 8.9E-88 706.4 33.8 357 429-786 3-382 (382)
4 4ap2_B Cullin-3, CUL-3; ubiqui 100.0 5.9E-70 2E-74 607.2 35.9 366 9-443 28-395 (410)
5 4eoz_B Cullin-3, CUL-3; E3 ubi 100.0 9.2E-68 3.1E-72 582.3 27.0 354 7-426 9-364 (364)
6 2wzk_A Cullin-5, CUL-5; UBL co 100.0 4.6E-66 1.6E-70 573.7 34.6 358 5-427 9-381 (391)
7 4a64_A Cullin-4B, CUL4B, CUL-4 100.0 2.2E-64 7.5E-69 553.3 37.2 344 7-427 6-353 (354)
8 3o2p_E Cell division control p 99.9 1.1E-27 3.8E-32 203.2 4.7 82 704-786 7-88 (88)
9 3tdu_C Cullin-1, CUL-1; E2:E3, 99.9 6.9E-28 2.4E-32 199.7 2.2 76 711-786 2-77 (77)
10 1iuy_A Cullin-3 homologue; win 99.9 1.5E-27 5.1E-32 204.7 -0.7 83 704-786 10-92 (92)
11 2do7_A Cullin-4B, CUL-4B; heli 99.9 7.5E-27 2.6E-31 203.1 3.1 81 704-786 15-95 (101)
12 1wi9_A Protein C20ORF116 homol 84.0 0.41 1.4E-05 38.3 1.7 54 725-786 12-65 (72)
13 3cuo_A Uncharacterized HTH-typ 83.4 1.5 5.2E-05 36.9 5.4 49 621-671 23-71 (99)
14 3jth_A Transcription activator 82.1 2.9 9.8E-05 35.4 6.6 50 621-673 22-71 (98)
15 3lmm_A Uncharacterized protein 81.4 0.65 2.2E-05 53.3 2.8 137 621-780 429-568 (583)
16 2jt1_A PEFI protein; solution 81.1 1.4 4.9E-05 36.0 4.0 41 635-677 23-63 (77)
17 1p4x_A Staphylococcal accessor 81.0 1.7 5.8E-05 44.1 5.5 52 619-672 31-84 (250)
18 3tgn_A ADC operon repressor AD 79.8 2.3 7.8E-05 38.5 5.6 52 618-672 34-85 (146)
19 3hsr_A HTH-type transcriptiona 79.7 1.7 5.8E-05 39.3 4.6 51 620-672 34-84 (140)
20 2dk5_A DNA-directed RNA polyme 79.3 1.7 5.8E-05 36.7 4.1 50 618-669 16-67 (91)
21 1y0u_A Arsenical resistance op 78.6 3.5 0.00012 34.7 6.0 56 621-688 30-85 (96)
22 3g3z_A NMB1585, transcriptiona 78.4 2.1 7.1E-05 38.9 4.8 51 620-672 29-79 (145)
23 1sfx_A Conserved hypothetical 77.9 1.8 6.1E-05 36.9 4.0 50 620-671 18-67 (109)
24 2htj_A P fimbrial regulatory p 77.4 4.4 0.00015 33.0 6.0 59 626-688 4-62 (81)
25 1qgp_A Protein (double strande 76.9 2.6 9E-05 34.3 4.4 45 625-671 17-64 (77)
26 3cdh_A Transcriptional regulat 76.5 3.4 0.00012 37.8 5.8 50 620-671 41-90 (155)
27 3ech_A MEXR, multidrug resista 76.3 1.7 5.9E-05 39.3 3.6 52 619-672 34-85 (142)
28 3nrv_A Putative transcriptiona 76.0 2.6 8.9E-05 38.3 4.7 52 619-672 37-88 (148)
29 2d1h_A ST1889, 109AA long hypo 75.4 3.2 0.00011 35.3 4.9 51 620-672 19-70 (109)
30 4hbl_A Transcriptional regulat 75.2 2.2 7.6E-05 39.0 4.0 51 620-672 39-89 (149)
31 2frh_A SARA, staphylococcal ac 75.1 2.3 7.7E-05 38.0 4.0 51 620-672 35-87 (127)
32 3oop_A LIN2960 protein; protei 74.8 1.8 6.3E-05 39.1 3.4 51 620-672 35-85 (143)
33 2gxg_A 146AA long hypothetical 74.7 3.8 0.00013 36.9 5.5 49 620-671 35-83 (146)
34 2fbh_A Transcriptional regulat 74.4 2.9 0.0001 37.7 4.6 51 620-672 35-86 (146)
35 1u2w_A CADC repressor, cadmium 74.1 4.6 0.00016 35.8 5.7 50 621-672 41-90 (122)
36 2qww_A Transcriptional regulat 73.9 3.1 0.0001 38.1 4.7 49 620-670 39-87 (154)
37 3bpv_A Transcriptional regulat 73.4 2.5 8.4E-05 37.8 3.8 50 620-671 27-76 (138)
38 3eco_A MEPR; mutlidrug efflux 73.3 2.8 9.6E-05 37.6 4.2 51 620-672 29-81 (139)
39 3r0a_A Putative transcriptiona 73.1 3 0.0001 37.2 4.2 51 619-671 23-75 (123)
40 2fu4_A Ferric uptake regulatio 72.9 3.7 0.00013 33.5 4.4 51 619-671 14-71 (83)
41 3pqk_A Biofilm growth-associat 72.9 6.9 0.00024 33.2 6.4 60 622-688 23-82 (102)
42 3bj6_A Transcriptional regulat 72.3 3.6 0.00012 37.4 4.7 51 620-672 38-88 (152)
43 3k0l_A Repressor protein; heli 72.0 2.7 9.3E-05 39.0 3.8 51 620-672 44-94 (162)
44 1jgs_A Multiple antibiotic res 71.8 2.9 0.0001 37.4 3.9 50 620-671 32-81 (138)
45 3bro_A Transcriptional regulat 71.7 3.9 0.00013 36.6 4.8 50 620-671 32-83 (141)
46 2fa5_A Transcriptional regulat 71.7 3.7 0.00013 37.9 4.7 50 620-671 47-96 (162)
47 1tbx_A ORF F-93, hypothetical 70.7 2.6 9E-05 35.6 3.1 50 620-671 6-59 (99)
48 3e6m_A MARR family transcripti 70.4 2.9 9.8E-05 38.8 3.6 51 620-672 51-101 (161)
49 3deu_A Transcriptional regulat 69.8 3.8 0.00013 38.3 4.3 51 620-672 51-102 (166)
50 3bdd_A Regulatory protein MARR 69.6 3.6 0.00012 36.8 4.0 51 619-671 28-78 (142)
51 3bja_A Transcriptional regulat 69.6 2.4 8.2E-05 37.9 2.8 50 620-671 31-80 (139)
52 2pex_A Transcriptional regulat 69.5 3.8 0.00013 37.4 4.2 50 620-671 45-94 (153)
53 2nyx_A Probable transcriptiona 69.4 3.1 0.00011 38.9 3.7 51 619-671 42-92 (168)
54 1qbj_A Protein (double-strande 69.4 6.7 0.00023 32.2 5.2 47 624-672 12-61 (81)
55 3lwf_A LIN1550 protein, putati 69.1 10 0.00036 35.4 7.2 59 623-688 30-89 (159)
56 3cjn_A Transcriptional regulat 68.8 3.8 0.00013 37.8 4.1 50 620-671 50-99 (162)
57 2nnn_A Probable transcriptiona 68.7 2.9 0.0001 37.4 3.2 51 619-671 35-85 (140)
58 2vn2_A DNAD, chromosome replic 68.3 4.6 0.00016 36.2 4.4 53 618-672 28-85 (128)
59 1ku9_A Hypothetical protein MJ 68.2 6.2 0.00021 35.5 5.4 50 620-671 24-74 (152)
60 2a61_A Transcriptional regulat 68.0 3.1 0.00011 37.5 3.2 50 620-671 31-80 (145)
61 2hr3_A Probable transcriptiona 68.0 4 0.00014 36.9 4.0 50 620-671 33-83 (147)
62 1xn7_A Hypothetical protein YH 67.7 4.3 0.00015 33.1 3.6 43 627-671 7-49 (78)
63 2bv6_A MGRA, HTH-type transcri 67.6 2.8 9.7E-05 37.7 2.8 50 620-671 35-84 (142)
64 1sfu_A 34L protein; protein/Z- 67.5 10 0.00034 30.6 5.6 43 628-672 21-63 (75)
65 1xn7_A Hypothetical protein YH 67.4 2.3 7.8E-05 34.8 1.9 43 725-775 7-49 (78)
66 3t8r_A Staphylococcus aureus C 67.3 11 0.00039 34.3 6.9 57 624-687 15-72 (143)
67 1lj9_A Transcriptional regulat 67.3 3.4 0.00012 37.3 3.3 50 620-671 27-76 (144)
68 2rdp_A Putative transcriptiona 67.2 4 0.00014 37.0 3.8 50 620-671 40-89 (150)
69 2k02_A Ferrous iron transport 67.0 4.6 0.00016 33.7 3.7 43 627-671 7-49 (87)
70 1s3j_A YUSO protein; structura 66.7 3.5 0.00012 37.7 3.3 50 620-671 35-84 (155)
71 2eth_A Transcriptional regulat 66.5 4.3 0.00015 37.2 3.9 50 620-671 42-91 (154)
72 1z91_A Organic hydroperoxide r 66.4 3.8 0.00013 37.1 3.4 51 620-672 38-88 (147)
73 1p6r_A Penicillinase repressor 66.4 4.7 0.00016 32.8 3.7 51 620-672 7-61 (82)
74 2fbi_A Probable transcriptiona 66.1 3.1 0.00011 37.3 2.8 50 620-671 34-83 (142)
75 3s2w_A Transcriptional regulat 66.1 2.8 9.7E-05 38.7 2.5 51 620-672 48-98 (159)
76 4b8x_A SCO5413, possible MARR- 66.1 4.3 0.00015 37.2 3.8 51 620-672 33-85 (147)
77 3jw4_A Transcriptional regulat 65.9 2.6 8.9E-05 38.4 2.2 51 620-672 39-91 (148)
78 1xmk_A Double-stranded RNA-spe 65.9 7.6 0.00026 31.8 4.7 48 622-671 11-59 (79)
79 3k69_A Putative transcription 65.8 7.1 0.00024 36.6 5.3 46 623-670 15-60 (162)
80 3fm5_A Transcriptional regulat 65.4 5.2 0.00018 36.4 4.2 51 620-672 37-88 (150)
81 3f3x_A Transcriptional regulat 64.7 4 0.00014 36.9 3.2 50 619-671 34-83 (144)
82 4aik_A Transcriptional regulat 64.1 8.4 0.00029 35.4 5.4 51 620-672 29-80 (151)
83 2e1c_A Putative HTH-type trans 63.8 6.3 0.00022 37.3 4.6 66 600-670 8-73 (171)
84 2oqg_A Possible transcriptiona 63.7 4.9 0.00017 34.7 3.5 48 621-671 20-67 (114)
85 2v79_A DNA replication protein 63.6 4.8 0.00017 36.6 3.5 52 617-670 27-83 (135)
86 1oyi_A Double-stranded RNA-bin 63.5 7.5 0.00026 32.0 4.3 43 626-671 21-63 (82)
87 1r1u_A CZRA, repressor protein 63.5 6.3 0.00022 33.8 4.1 48 621-671 25-72 (106)
88 2l02_A Uncharacterized protein 63.2 9 0.00031 31.4 4.6 36 627-662 13-48 (82)
89 3nqo_A MARR-family transcripti 63.0 5.2 0.00018 38.3 3.9 51 620-672 39-91 (189)
90 3kp7_A Transcriptional regulat 63.0 4.2 0.00014 37.1 3.1 49 619-670 35-83 (151)
91 2xub_A DNA-directed RNA polyme 62.3 4.5 0.00015 45.9 3.7 128 634-777 31-162 (534)
92 1ub9_A Hypothetical protein PH 62.1 5.3 0.00018 33.4 3.4 48 621-670 15-62 (100)
93 3boq_A Transcriptional regulat 62.0 4.1 0.00014 37.5 2.8 50 620-671 45-95 (160)
94 2v79_A DNA replication protein 62.0 5.6 0.00019 36.1 3.6 28 747-774 56-83 (135)
95 2y75_A HTH-type transcriptiona 61.9 17 0.00056 32.3 6.8 48 634-688 24-71 (129)
96 1bja_A Transcription regulator 61.4 7.9 0.00027 32.8 4.1 50 618-669 12-62 (95)
97 2pn6_A ST1022, 150AA long hypo 61.0 11 0.00038 34.3 5.7 48 621-670 2-49 (150)
98 2k02_A Ferrous iron transport 60.6 2.8 9.4E-05 35.1 1.2 44 725-776 7-50 (87)
99 2fxa_A Protease production reg 60.6 5.2 0.00018 39.1 3.4 51 620-672 46-96 (207)
100 2k4b_A Transcriptional regulat 60.3 5.5 0.00019 34.1 3.1 60 722-786 37-96 (99)
101 2jsc_A Transcriptional regulat 58.7 12 0.0004 32.9 5.1 49 621-672 20-68 (118)
102 3r4k_A Transcriptional regulat 58.6 8.2 0.00028 39.2 4.6 56 625-688 9-65 (260)
103 2kko_A Possible transcriptiona 58.5 5.1 0.00017 34.7 2.6 45 624-671 27-71 (108)
104 1bby_A RAP30; average structur 58.4 16 0.00054 29.0 5.1 56 625-690 11-66 (69)
105 2obp_A Putative DNA-binding pr 58.2 8.1 0.00028 32.9 3.7 49 620-670 14-68 (96)
106 2w25_A Probable transcriptiona 57.4 10 0.00034 34.7 4.6 49 620-670 5-53 (150)
107 1p6r_A Penicillinase repressor 57.3 4.6 0.00016 32.9 2.0 57 724-785 13-69 (82)
108 1ylf_A RRF2 family protein; st 56.9 11 0.00039 34.6 4.9 46 623-670 17-62 (149)
109 2xrn_A HTH-type transcriptiona 56.8 12 0.00042 37.3 5.5 55 626-688 10-65 (241)
110 2wte_A CSA3; antiviral protein 55.9 8.2 0.00028 38.9 4.0 50 620-671 150-199 (244)
111 2heo_A Z-DNA binding protein 1 55.6 9.7 0.00033 29.8 3.6 45 623-669 11-56 (67)
112 1xd7_A YWNA; structural genomi 54.3 15 0.00052 33.5 5.3 45 623-671 12-56 (145)
113 3f6o_A Probable transcriptiona 53.3 11 0.00037 33.1 3.9 48 621-671 17-64 (118)
114 2cfx_A HTH-type transcriptiona 53.1 13 0.00045 33.7 4.7 49 620-670 3-51 (144)
115 1i1g_A Transcriptional regulat 52.2 11 0.00036 34.0 3.8 48 621-670 3-50 (141)
116 3u2r_A Regulatory protein MARR 51.5 5.9 0.0002 36.9 2.0 51 620-672 44-96 (168)
117 1sd4_A Penicillinase repressor 51.0 8.7 0.0003 33.7 3.0 51 619-671 7-61 (126)
118 2g9w_A Conserved hypothetical 51.0 16 0.00056 32.8 4.8 50 620-671 7-61 (138)
119 2lkp_A Transcriptional regulat 50.9 11 0.00039 32.8 3.7 47 621-670 31-77 (119)
120 4fx0_A Probable transcriptiona 50.5 18 0.00061 33.0 5.1 47 620-668 31-82 (148)
121 2p5k_A Arginine repressor; DNA 50.2 18 0.00062 27.4 4.4 37 624-660 7-48 (64)
122 1okr_A MECI, methicillin resis 50.2 6.7 0.00023 34.4 2.0 51 619-671 7-61 (123)
123 2cg4_A Regulatory protein ASNC 49.9 14 0.00049 33.7 4.4 49 620-670 6-54 (152)
124 2ia0_A Putative HTH-type trans 49.8 14 0.00049 34.7 4.4 50 618-669 13-62 (171)
125 2dbb_A Putative HTH-type trans 49.8 14 0.0005 33.6 4.4 48 620-669 7-54 (151)
126 1fse_A GERE; helix-turn-helix 49.6 25 0.00087 27.3 5.3 40 620-661 12-51 (74)
127 3mq0_A Transcriptional repress 49.5 12 0.0004 38.3 4.0 45 626-672 34-79 (275)
128 2cyy_A Putative HTH-type trans 49.3 16 0.00053 33.5 4.5 49 620-670 5-53 (151)
129 1r1t_A Transcriptional repress 49.2 20 0.00069 31.6 5.0 47 622-671 46-92 (122)
130 1p4x_A Staphylococcal accessor 47.9 16 0.00053 36.9 4.6 51 620-672 156-208 (250)
131 1hsj_A Fusion protein consisti 47.3 14 0.00049 40.7 4.6 52 619-672 401-454 (487)
132 2qlz_A Transcription factor PF 47.2 9.1 0.00031 38.2 2.6 152 622-777 12-213 (232)
133 2p5v_A Transcriptional regulat 46.9 18 0.00063 33.4 4.6 49 620-670 8-56 (162)
134 1mkm_A ICLR transcriptional re 45.8 23 0.00079 35.4 5.5 55 625-688 11-66 (249)
135 2pg4_A Uncharacterized protein 45.7 15 0.0005 30.6 3.4 44 624-669 17-62 (95)
136 3ulq_B Transcriptional regulat 45.5 29 0.00098 28.8 5.1 42 618-661 28-69 (90)
137 1je8_A Nitrate/nitrite respons 45.5 30 0.001 28.0 5.2 40 620-661 22-61 (82)
138 2zkz_A Transcriptional repress 45.3 14 0.00048 31.2 3.2 47 621-670 26-72 (99)
139 2vn2_A DNAD, chromosome replic 45.0 10 0.00036 33.8 2.4 27 750-776 59-85 (128)
140 2fu4_A Ferric uptake regulatio 44.5 14 0.00047 29.9 2.9 58 724-784 21-80 (83)
141 2l01_A Uncharacterized protein 44.3 26 0.00089 28.3 4.3 37 626-662 14-51 (77)
142 1q1h_A TFE, transcription fact 44.1 19 0.00064 30.9 3.9 39 631-671 28-66 (110)
143 2o0y_A Transcriptional regulat 43.9 21 0.0007 36.1 4.8 45 626-672 27-72 (260)
144 3omy_A Protein TRAM; DNA bindi 43.4 12 0.00043 27.5 2.1 41 190-234 9-49 (52)
145 1sd4_A Penicillinase repressor 42.7 15 0.00053 32.1 3.2 57 724-785 14-70 (126)
146 1tbx_A ORF F-93, hypothetical 42.6 12 0.00042 31.3 2.4 54 726-783 14-67 (99)
147 3i4p_A Transcriptional regulat 40.3 38 0.0013 31.3 5.7 44 624-669 5-48 (162)
148 2yu3_A DNA-directed RNA polyme 39.6 29 0.00099 29.3 4.2 50 619-670 34-85 (95)
149 2hzt_A Putative HTH-type trans 39.5 30 0.001 29.5 4.5 45 624-671 16-61 (107)
150 2k4b_A Transcriptional regulat 39.3 5.6 0.00019 34.1 -0.3 52 619-672 32-87 (99)
151 3c57_A Two component transcrip 39.3 33 0.0011 28.6 4.6 41 619-661 27-67 (95)
152 1x3u_A Transcriptional regulat 38.9 48 0.0016 26.0 5.4 40 620-661 17-56 (79)
153 2ia2_A Putative transcriptiona 38.5 30 0.001 34.9 5.0 55 625-689 24-79 (265)
154 2g9w_A Conserved hypothetical 37.9 27 0.00091 31.3 4.1 58 722-784 11-69 (138)
155 3f6v_A Possible transcriptiona 37.5 21 0.00073 32.8 3.4 48 621-671 57-104 (151)
156 2g7u_A Transcriptional regulat 37.3 35 0.0012 34.2 5.3 54 625-688 17-71 (257)
157 2p7v_B Sigma-70, RNA polymeras 37.2 44 0.0015 25.7 4.8 40 621-660 7-49 (68)
158 1oks_A RNA polymerase alpha su 36.9 44 0.0015 24.6 4.1 45 483-527 4-48 (56)
159 2fbk_A Transcriptional regulat 36.6 9.8 0.00034 35.9 0.9 50 620-671 67-119 (181)
160 2x4h_A Hypothetical protein SS 36.5 46 0.0016 29.4 5.5 50 619-670 10-63 (139)
161 2qvo_A Uncharacterized protein 36.5 19 0.00064 30.0 2.6 47 620-668 10-60 (95)
162 3df8_A Possible HXLR family tr 36.0 39 0.0013 29.1 4.7 46 623-671 28-76 (111)
163 2p4w_A Transcriptional regulat 35.8 36 0.0012 33.0 4.9 48 621-671 14-61 (202)
164 1dp3_A TRAM protein; helix-loo 35.4 10 0.00034 28.4 0.5 43 191-236 9-52 (55)
165 2x48_A CAG38821; archeal virus 35.1 91 0.0031 22.5 6.1 44 612-658 8-53 (55)
166 1on2_A Transcriptional regulat 35.0 30 0.001 30.9 4.0 40 630-671 16-55 (142)
167 3t72_q RNA polymerase sigma fa 34.3 48 0.0016 28.1 4.8 38 621-658 21-61 (99)
168 3r0a_A Putative transcriptiona 34.1 17 0.00058 32.1 2.0 48 721-776 27-76 (123)
169 1tc3_C Protein (TC3 transposas 33.9 55 0.0019 22.5 4.6 33 625-659 12-44 (51)
170 2htj_A P fimbrial regulatory p 33.8 19 0.00065 29.0 2.1 43 725-775 5-47 (81)
171 3b73_A PHIH1 repressor-like pr 33.1 31 0.001 30.1 3.4 50 620-671 11-62 (111)
172 1uly_A Hypothetical protein PH 33.1 54 0.0018 31.4 5.6 49 620-671 18-66 (192)
173 3f8b_A Transcriptional regulat 32.8 44 0.0015 29.1 4.5 59 716-775 8-66 (116)
174 1z7u_A Hypothetical protein EF 32.5 31 0.0011 29.7 3.5 46 623-671 23-69 (112)
175 3on0_A Protein TRAM; DNA bindi 32.1 61 0.0021 28.5 5.0 55 190-245 9-72 (127)
176 3to7_A Histone acetyltransfera 32.1 35 0.0012 34.4 4.1 30 631-660 203-232 (276)
177 2lnb_A Z-DNA-binding protein 1 31.7 28 0.00097 28.1 2.6 36 626-661 23-59 (80)
178 4a5n_A Uncharacterized HTH-typ 31.6 52 0.0018 29.5 4.8 45 624-671 28-73 (131)
179 1nkl_A NK-lysin; saposin fold, 31.1 1.3E+02 0.0045 23.9 6.8 59 432-494 6-65 (78)
180 2jpc_A SSRB; DNA binding prote 30.9 43 0.0015 24.9 3.7 34 626-661 5-38 (61)
181 2f2e_A PA1607; transcription f 30.8 54 0.0018 29.7 4.9 45 625-672 27-71 (146)
182 1tty_A Sigma-A, RNA polymerase 30.5 66 0.0023 26.1 5.0 39 621-659 20-61 (87)
183 3kmi_A Putative membrane prote 30.1 1.9E+02 0.0066 27.1 8.8 120 262-399 10-141 (177)
184 2fsw_A PG_0823 protein; alpha- 30.1 45 0.0016 28.3 4.1 43 626-671 29-72 (107)
185 2qlz_A Transcription factor PF 29.9 35 0.0012 33.9 3.7 44 625-671 168-211 (232)
186 1ku3_A Sigma factor SIGA; heli 29.9 69 0.0023 24.9 4.8 39 621-659 12-53 (73)
187 1yyv_A Putative transcriptiona 29.5 47 0.0016 29.6 4.2 48 621-671 34-82 (131)
188 1qbj_A Protein (double-strande 29.3 18 0.00061 29.6 1.2 51 724-782 14-67 (81)
189 2rnj_A Response regulator prot 29.2 35 0.0012 28.1 3.1 40 620-661 30-69 (91)
190 3cuq_B Vacuolar protein-sortin 28.8 89 0.003 30.6 6.4 84 570-671 113-201 (218)
191 1qgp_A Protein (double strande 27.8 26 0.00088 28.3 1.9 51 724-782 18-71 (77)
192 3cuo_A Uncharacterized HTH-typ 27.3 22 0.00074 29.4 1.4 54 721-782 25-78 (99)
193 1okr_A MECI, methicillin resis 26.7 19 0.00065 31.3 1.0 53 728-785 18-70 (123)
194 2ozu_A Histone acetyltransfera 25.7 47 0.0016 33.7 3.7 28 633-660 211-238 (284)
195 2ou2_A Histone acetyltransfera 25.3 56 0.0019 33.1 4.2 25 636-660 212-236 (280)
196 1l9l_A Granulysin; saposin fol 25.2 1.2E+02 0.0042 24.0 5.5 58 432-494 6-65 (74)
197 2jt1_A PEFI protein; solution 25.2 27 0.00094 28.2 1.6 26 754-779 36-61 (77)
198 2dk5_A DNA-directed RNA polyme 24.8 43 0.0015 27.9 2.8 25 751-775 45-69 (91)
199 4a0z_A Transcription factor FA 24.3 63 0.0022 30.9 4.3 40 623-662 13-52 (190)
200 2pq8_A Probable histone acetyl 24.1 43 0.0015 33.9 3.1 28 633-660 205-232 (278)
201 1p4w_A RCSB; solution structur 24.0 77 0.0026 26.7 4.3 40 620-661 35-74 (99)
202 3hug_A RNA polymerase sigma fa 23.8 98 0.0034 25.2 4.9 38 620-659 38-76 (92)
203 2q2k_A Hypothetical protein; p 22.6 47 0.0016 24.6 2.2 35 324-358 32-68 (70)
204 1z6r_A MLC protein; transcript 22.4 1E+02 0.0034 33.0 6.0 64 625-690 19-85 (406)
205 1vp7_A Exodeoxyribonuclease VI 22.3 1.8E+02 0.0063 24.6 6.2 36 5-47 26-61 (100)
206 2o8x_A Probable RNA polymerase 22.3 1.1E+02 0.0039 23.0 4.8 38 621-660 17-55 (70)
207 1mzb_A Ferric uptake regulatio 21.2 92 0.0032 27.7 4.5 63 619-686 15-84 (136)
208 3i4p_A Transcriptional regulat 21.2 35 0.0012 31.5 1.7 47 721-775 4-50 (162)
209 2frh_A SARA, staphylococcal ac 21.1 46 0.0016 29.1 2.4 25 751-775 62-86 (127)
210 2fe3_A Peroxide operon regulat 20.9 1.1E+02 0.0039 27.5 5.1 64 619-687 19-88 (145)
211 1r7j_A Conserved hypothetical 20.7 1.1E+02 0.0039 25.4 4.7 43 625-671 11-53 (95)
212 1sfx_A Conserved hypothetical 20.5 33 0.0011 28.5 1.3 47 722-776 22-68 (109)
No 1
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=100.00 E-value=3.5e-142 Score=1272.87 Aligned_cols=707 Identities=32% Similarity=0.586 Sum_probs=658.4
Q ss_pred HHHhHHHHHHHHHHHHHHhcCCCCCCCChhhhHHhhhcccccccchhHHHHHHHHhhhhhhhhhhhhhhhhcccchhhhH
Q 003927 11 LEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVIHNFFLAFLWYCFFFFFSKKSVYRT 90 (786)
Q Consensus 11 ~~~~W~~~~~~i~~~~~~l~~~~~~~~~~~~ym~~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lY~~ 90 (786)
||++|+.|++||++|.+ .++++...||+||| +
T Consensus 1 f~~~W~~L~~ai~~I~~------~~~~s~~~~~~LY~------------------------------------------~ 32 (760)
T 1ldj_A 1 LDQIWDDLRAGIQQVYT------RQSMAKSRYMELYT------------------------------------------H 32 (760)
T ss_dssp CHHHHHHHHHHHHHHTT------CCCCCHHHHHHHHH------------------------------------------H
T ss_pred ChhhHHHHHHHHHHHHh------cCCCCHHHHHHHHH------------------------------------------H
Confidence 68999999999999854 25799999999999 9
Q ss_pred HhhhhccC-----------------------CCCCchHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHH
Q 003927 91 IYNMCTQK-----------------------PPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHK 147 (786)
Q Consensus 91 vY~~c~~~-----------------------~~~~~~e~LY~~l~~~l~~~l~~~v~~~l~~~~~e~~L~~~~~~W~~~~ 147 (786)
||++|+++ +|+.+|++||+++++++++|+...+. .+....++.||..|.++|++|+
T Consensus 33 vYn~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LY~~l~~~l~~~l~~~~~-~~~~~~~e~lL~~~~~~W~~~~ 111 (760)
T 1ldj_A 33 VYNYCTSVHQSNQARGAGVPPSKSKKGQTPGGAQFVGLELYKRLKEFLKNYLTNLLK-DGEDLMDESVLKFYTQQWEDYR 111 (760)
T ss_dssp HHHHTCCC----------------------------TTHHHHHHHHHHHHHHHHHHH-TTCSCTTTTHHHHHHHHHHHHH
T ss_pred HHHHhcCCcccCCCcccccccccccccccccCcchhHHHHHHHHHHHHHHHHHHHHH-HHhhcChHHHHHHHHHHHHHHH
Confidence 99999997 13457999999999999999998653 4455668899999999999999
Q ss_pred HHHHHHHHhhcccchhhhhcCC------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHH
Q 003927 148 VMVRWLSRFFHYLDRYFIARRS------LPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDI 221 (786)
Q Consensus 148 ~~~~~l~~vF~YLdR~yv~~~~------~~~i~~l~l~~fr~~vf~~l~~~l~~~il~lI~~~R~g~~id~~llk~vi~~ 221 (786)
.++++|+++|+||||+||+++. +++|+++||.+||++||.++++++.+++|++|+++|+|+.||+.+|+++++|
T Consensus 112 ~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lgL~~fr~~vf~~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~m 191 (760)
T 1ldj_A 112 FSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLALVTWRDCLFRPLNKQVTNAVLKLIEKERNGETINTRLISGVVQS 191 (760)
T ss_dssp HHHHHHHHHTHHHHHHSSSCCC-------CCHHHHHHHTTHHHHTTTTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 9999999999999999999875 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHhccC---------cccccHHhhHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHccccCCCcHHHH
Q 003927 222 FVEIGMG---------QMDYYENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKL 292 (786)
Q Consensus 222 l~~lg~~---------~~~~Y~~~FE~~~L~~t~~yY~~~s~~~l~~~s~~eYl~kve~~l~eE~~r~~~yL~~st~~kl 292 (786)
|++||.+ ++.+|.+.||++||++|+.||+.+|+.|++++++++||++|+.+|++|.+||+.||+++|.++|
T Consensus 192 l~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~~fY~~es~~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l 271 (760)
T 1ldj_A 192 YVELGLNEDDAFAKGPTLTVYKESFESQFLADTERFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDEL 271 (760)
T ss_dssp HHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHH
T ss_pred HHHhCcccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHH
Confidence 9999863 3689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHhhhccCChhhHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhHHHHhhhhh
Q 003927 293 LEKVQHELLSVYANQLLEKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKK 372 (786)
Q Consensus 293 ~~~l~~~LI~~~~~~ll~~~~s~~~~ll~~~~~~dL~~~y~L~~~~~~~l~~l~~~~~~~I~~~g~~~~~~~~~~~~~~~ 372 (786)
.++|+++||.+|.+.|+ +||..||++++.+||++||+||+|+|+|+++|+..|++||.+.|.+++.+..+..
T Consensus 272 ~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~dL~~my~L~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~~---- 343 (760)
T 1ldj_A 272 ARKCEQVLIEKHLEIFH----TEFQNLLDADKNEDLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAA---- 343 (760)
T ss_dssp HHHHHHHHSSSSSHHHH----HHHHHHHHSCCTTHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSG----
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHcCCHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHHHHHHHhhccc----
Confidence 99999999999999885 5899999999999999999999999999999999999999999999997643111
Q ss_pred hhcccccccchhHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhCC------CCCCchHHHHHHHHHHHHhc
Q 003927 373 AEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKG------VAGSSSAELLATFCDNILKK 446 (786)
Q Consensus 373 ~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~~~~f~~~l~~af~~~iN~~------~~~~~~~e~La~y~D~~lkk 446 (786)
..+|..||+.||++|++|+.++..||++|+.|..++++||+.|+|.+ ....++||+||+|||.+||+
T Consensus 344 -------~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk 416 (760)
T 1ldj_A 344 -------LNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDKACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKK 416 (760)
T ss_dssp -------GGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBC
T ss_pred -------ccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhcCCccccccccccccHHHHHHHhHHHHhC
Confidence 35789999999999999999999999999999999999999999987 23468999999999999998
Q ss_pred CCCCCCChHHHHHHHHHHHhhhhccCChhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCChhhHhHHHHHHHH
Q 003927 447 GGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDL 526 (786)
Q Consensus 447 ~~~~~~~~~e~e~~l~~i~~lf~~l~~KD~F~~~Y~~~LakRLL~~~s~s~d~E~~~I~~Lk~~~G~~~t~kl~~M~~D~ 526 (786)
|. ++.++++++..|++++.||+|+++||+|+++|+++||+|||+++|+|.|+|+.||++||.+||.+||+||++||+|+
T Consensus 417 ~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di 495 (760)
T 1ldj_A 417 SS-KNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMFQDI 495 (760)
T ss_dssp CS-SCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 74 55688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCCCCCccCcHHHHHHHHHHHHHHhhcCCCceeEeecCcceEE
Q 003927 527 TLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCN 606 (786)
Q Consensus 527 ~~S~~l~~~F~~~~~~~~~~~~~~~f~v~VLt~~~WP~~~~~~~~lP~~l~~~~~~F~~~Y~~k~~~RkL~W~~~l~~~~ 606 (786)
..|++++..|++++.++ ...+++|+|.|||+|+||.++..++.||++|+.+++.|++||..+|+||+|+|+|++|+|+
T Consensus 496 ~~S~~l~~~f~~~~~~~--~~~~~~~~v~VLs~~~WP~~~~~~~~lP~~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~ 573 (760)
T 1ldj_A 496 GVSKDLNEQFKKHLTNS--EPLDLDFSIQVLSSGSWPFQQSCTFALPSELERSYQRFTAFYASRHSGRKLTWLYQLSKGE 573 (760)
T ss_dssp HHHHHHHHHHHHHHTTT--CCCSSEEEEEEEETTTSCCCCCSCCCCCGGGHHHHHHHHHHTTTTCTTCCEEECGGGCCCE
T ss_pred HHHHHHHHHHHHHHhcc--cCCCCCeeEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCCeEEEecccccEE
Confidence 99999999999987651 1246999999999999999988899999999999999999999999999999999999999
Q ss_pred EEeEecCeeEEEEEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC-----CCCCCCCCC
Q 003927 607 LLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP-----NTKTISPTD 681 (786)
Q Consensus 607 i~~~~~~~~~~l~vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~-----~~~~i~~~~ 681 (786)
|+++|++++|+|+||++||+||++||+.+++|++||++.||+++++|+++|.+|+ |.+||.+.| +|+.+.+++
T Consensus 574 l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l~r~L~~l~--k~~iL~~~~~~~~~~~~~~~~~~ 651 (760)
T 1ldj_A 574 LVTNCFKNRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILL--KSKLLVLEDENANVDEVELKPDT 651 (760)
T ss_dssp EEESSSSSCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHHHHHHHHHH--HTTTEECSCTTCCTTTCCCCTTC
T ss_pred EEEEECCceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcceeCCCccccccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999997 778998565 788899999
Q ss_pred eEEEccCCCCCcceEeecCCCch----hhhhHHHhHHHHhhhhhcceeeeccccCCCCChhHHHHHHHHHhCCCCCCChH
Q 003927 682 HFEFNSKFTDKMRRIKIPLPPVD----EKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFK 757 (786)
Q Consensus 682 ~f~~N~~F~~~~~ki~i~~~~~~----e~~~~~~~v~~dR~~~i~A~IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~ 757 (786)
.|++|.+|++++.||+||.+... |.+++.+.|++||++.||||||||||+||+|+|++|++||++|+++||+|++.
T Consensus 652 ~f~lN~~F~~k~~ri~i~~~~~~e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~ 731 (760)
T 1ldj_A 652 LIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVP 731 (760)
T ss_dssp EEEECSSCCCSSSSBCCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHTTTCCCCHH
T ss_pred EEEeeccccCCceEEEecCccccccchhhhhHHHHHHHHHHhHheeeehhhhhccCCCcHHHHHHHHHHHHhccCCCCHH
Confidence 99999999999999999876543 34557789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhccccccCCCCCceeecC
Q 003927 758 AIKKRIEDLITRDYLERDKSNPNMFRYLA 786 (786)
Q Consensus 758 ~iK~~Ie~LIekeyl~R~~~d~~~y~Y~a 786 (786)
+||+|||.|||||||+|+++|+++|+|+|
T Consensus 732 ~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 732 VIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred HHHHHHHHHhhccceeeCCCCCcceeeCC
Confidence 99999999999999999999999999998
No 2
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=100.00 E-value=5.9e-137 Score=1227.65 Aligned_cols=694 Identities=35% Similarity=0.643 Sum_probs=648.9
Q ss_pred CCHHHhHHHHHHHHHHHHHHhcCCCCCCCChhhhHHhhhcccccccchhHHHHHHHHhhhhhhhhhhhhhhhhcccchhh
Q 003927 9 IDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVIHNFFLAFLWYCFFFFFSKKSVY 88 (786)
Q Consensus 9 ~~~~~~W~~~~~~i~~~~~~l~~~~~~~~~~~~ym~~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lY 88 (786)
..+|++|..|++||+.| +.+.+ .++ .||+||+
T Consensus 57 ~~~e~~W~~L~~ai~~I---~~~~~-~~~---s~e~LY~----------------------------------------- 88 (759)
T 2hye_C 57 NYTQDTWRKLHEAVRAV---QSSTS-IRY---NLEELYQ----------------------------------------- 88 (759)
T ss_dssp CTTTTHHHHHHHHHHTT---STTCC-CSS---CHHHHHH-----------------------------------------
T ss_pred chHHHHHHHHHHHHHHH---HhCCC-CCC---CHHHHHH-----------------------------------------
Confidence 45699999999999876 44322 222 2899999
Q ss_pred hHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhcccccccc--cCcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhh
Q 003927 89 RTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIRE--KHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIA 166 (786)
Q Consensus 89 ~~vY~~c~~~~~~~~~e~LY~~l~~~l~~~l~~~v~~~l~~--~~~e~~L~~~~~~W~~~~~~~~~l~~vF~YLdR~yv~ 166 (786)
+||++|+++ +|++||+++++++++|+...+ +.+.. .+++.||+.|...|++|+.++.+|+++|+||||+||+
T Consensus 89 -~vy~lc~~k----~~~~LY~~l~~~~~~~l~~~~-~~l~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~ 162 (759)
T 2hye_C 89 -AVENLCSHK----VSPMLYKQLRQACEDHVQAQI-LPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVL 162 (759)
T ss_dssp -HHHHHCCTT----THHHHHHHHHHHHHHHHHHHH-HHHTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTT
T ss_pred -HHHHHHhcC----CHHHHHHHHHHHHHHHHHHHH-HHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhh
Confidence 999999998 799999999999999998753 45533 2346899999999999999999999999999999999
Q ss_pred cCC-CCcHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhccCcccccHHhhHHHHHH
Q 003927 167 RRS-LPPLNEVGLTCFRDLVYTE--LNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLK 243 (786)
Q Consensus 167 ~~~-~~~i~~l~l~~fr~~vf~~--l~~~l~~~il~lI~~~R~g~~id~~llk~vi~~l~~lg~~~~~~Y~~~FE~~~L~ 243 (786)
++. .++|+++|+.+||++||.+ +++++.+++|++|+++|+|+.||+.+|+++++||+.| .+|.+.||++||+
T Consensus 163 ~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~eR~Ge~id~~llk~vi~ml~~L-----~vY~~~FE~~fL~ 237 (759)
T 2hye_C 163 QNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDL-----QVYKDSFELKFLE 237 (759)
T ss_dssp SCSSSCCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHT-----TCHHHHTHHHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhhh-----hHHHHHHHHHHHH
Confidence 876 8999999999999999997 9999999999999999999999999999999999996 5899999999999
Q ss_pred HHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHccccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhccC
Q 003927 244 DTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDD 323 (786)
Q Consensus 244 ~t~~yY~~~s~~~l~~~s~~eYl~kve~~l~eE~~r~~~yL~~st~~kl~~~l~~~LI~~~~~~ll~~~~s~~~~ll~~~ 323 (786)
+|.+||+.+++.|++++++++||++|+.+|++|.+||..||+++|.++|.++|+++||.+|.+.|++ +||..||+++
T Consensus 238 ~T~~fY~~e~~~~l~~~~~~~Yl~~~e~rl~eE~~r~~~yL~~~t~~~l~~~~~~~Li~~~~~~ll~---~~~~~lL~~~ 314 (759)
T 2hye_C 238 ETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQ---KGLDHLLDEN 314 (759)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTHHHHTTTSCTTTHHHHHHHHHHHHTTTCSHHHHH---TTHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999986 4899999999
Q ss_pred ChhhHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHH
Q 003927 324 KVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVND 403 (786)
Q Consensus 324 ~~~dL~~~y~L~~~~~~~l~~l~~~~~~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~ 403 (786)
+.+||++||+|++|+|+|++.|+..|++||++.|.+++.+. ..+..||+.|+++|++|+.++..
T Consensus 315 ~~~dL~~mY~L~~rv~~~l~~l~~~~~~~I~~~g~~iv~~~----------------~~~~~~V~~ll~~~~k~~~lv~~ 378 (759)
T 2hye_C 315 RVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINP----------------EKDKDMVQDLLDFKDKVDHVIEV 378 (759)
T ss_dssp CHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHSCG----------------GGTTTHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhHHHhcCc----------------ccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988542 12457999999999999999999
Q ss_pred hcCCChHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHhhhhccCChhHHHHHHHH
Q 003927 404 CFQNHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRK 483 (786)
Q Consensus 404 ~F~~~~~f~~~l~~af~~~iN~~~~~~~~~e~La~y~D~~lkk~~~~~~~~~e~e~~l~~i~~lf~~l~~KD~F~~~Y~~ 483 (786)
||++|+.|..++++||+.|+|.+. .++||+||+|||.+||+|. ++.+++|++..|++++.||+|++|||+|+++|++
T Consensus 379 ~F~~d~~f~~al~~af~~fiN~~~--~~~~E~la~y~D~~Lk~~~-k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~ 455 (759)
T 2hye_C 379 CFQKNERFVNLMKESFETFINKRP--NKPAELIAKHVDSKLRAGN-KEATDEELERTLDKIMILFRFIHGKDVFEAFYKK 455 (759)
T ss_dssp TTTTCHHHHHHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHSSCG-GGCCSTTHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHCCCC--CchHHHHHHHHHHHhccCC-CCCCHHHHHHHHHHhhhhhhhcCCHHHHHHHHHH
Confidence 999999999999999999999863 6899999999999999864 4567889999999999999999999999999999
Q ss_pred HHHHHHhCCCCCChHHHHHHHHHHHHHhCChhhHhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCC
Q 003927 484 KLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWP 563 (786)
Q Consensus 484 ~LakRLL~~~s~s~d~E~~~I~~Lk~~~G~~~t~kl~~M~~D~~~S~~l~~~F~~~~~~~~~~~~~~~f~v~VLt~~~WP 563 (786)
+||+|||.++|+|.|+|+.||++||.+||.+||+||++||+|+..|++++..|++++.+.+. ..+++|+|.|||+|+||
T Consensus 456 ~LakRLL~~~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~~-~~~~~~~v~VLs~~~WP 534 (759)
T 2hye_C 456 DLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSD-SGPIDLTVNILTMGYWP 534 (759)
T ss_dssp HHHHHHHSSCCSCHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-CCCCEEEEEEEETTTSC
T ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCceEEEEeCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999998764322 24689999999999999
Q ss_pred CCCCCCccCcHHHHHHHHHHHHHHhhcCCCceeEeecCcceEEEEeEecCeeEEEEEcHHHHHHHHhhcCCCCccHHHHH
Q 003927 564 SYKSFDLNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIM 643 (786)
Q Consensus 564 ~~~~~~~~lP~~l~~~~~~F~~~Y~~k~~~RkL~W~~~l~~~~i~~~~~~~~~~l~vs~~Q~~ILllFN~~~~lt~~ei~ 643 (786)
.++..++.+|++|+.+++.|++||..+|+||+|+|++++|+|+|+++|++++|+|+||++||+||++||+.+++|++||+
T Consensus 535 ~~~~~~~~lP~~l~~~~~~F~~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~iLllFn~~~~lt~~ei~ 614 (759)
T 2hye_C 535 TYTPMEVHLTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKKEFQVSLFQTLVLLMFNEGDGFSFEEIK 614 (759)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHHTTSCSEECCBCGGGCEEEEECCCSSCCCEEEEEHHHHHHHHHTTSCCCEEHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHHHhhCCCCEEEeccccCcEEEEEEeCCceEEEEEcHHHHHHHHHhcCCCCcCHHHHH
Confidence 99888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccCCCCCcceEeecCCCc----hhhhhHHHhHHHHhhh
Q 003927 644 TQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPV----DEKKKVIEDVDKDRRY 719 (786)
Q Consensus 644 ~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~f~~N~~F~~~~~ki~i~~~~~----~e~~~~~~~v~~dR~~ 719 (786)
+.||+++++|+++|.+|+++|.+||.++|+|+.+.+++.|.+|.+|++++.||+||.+.. +|.+++.+.|++||++
T Consensus 615 ~~t~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~~~d~f~lN~~f~~~~~riki~~i~~~e~~~e~~~t~~~v~~dR~~ 694 (759)
T 2hye_C 615 MATGIEDSELRRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQY 694 (759)
T ss_dssp HHTCCCHHHHHHHHHTTTTTTTCSEEETTCSSSCCSSCEEEECCCCCCSCSSEECGGGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHccCCceeecCCCCCCCCCCCEEEeeccccCCceEEEeccccccccchhhhhhHHHHHHHHHH
Confidence 999999999999999999888999999999999999999999999999999999986432 3456678899999999
Q ss_pred hhcceeeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCceeecC
Q 003927 720 AIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 786 (786)
Q Consensus 720 ~i~A~IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y~Y~a 786 (786)
.||||||||||+||+|+|++|++||++|++ |+|++.+||+|||.|||||||+|+++|+++|+|+|
T Consensus 695 ~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~--F~p~~~~IKk~Ie~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 695 QIDAAIVRIMKMRKTLGHNLLVSELYNQLK--FPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp HHHHHHHHHHHHSSEEETHHHHHHHHHHSS--SCCCHHHHHHHHHHHHHTTSCBCCSSCTTEEECCC
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhcccceecCCCCCCeeEecC
Confidence 999999999999999999999999999998 99999999999999999999999999999999998
No 3
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=100.00 E-value=2.6e-83 Score=706.37 Aligned_cols=357 Identities=32% Similarity=0.493 Sum_probs=327.2
Q ss_pred CCchHHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHhhhhccCChhHHHHHHHHHHHHHHhCCCCCChHHHHHHHHHH
Q 003927 429 GSSSAELLATFCDNILKKGG-SEKLSDEAIEEMLEKVVKLLAYISDKDLFAEFYRKKLARRLLFDKSANDDHERSILTKL 507 (786)
Q Consensus 429 ~~~~~e~La~y~D~~lkk~~-~~~~~~~e~e~~l~~i~~lf~~l~~KD~F~~~Y~~~LakRLL~~~s~s~d~E~~~I~~L 507 (786)
..++||+||+|||.+||+|. +++.+++++|..|++++.||+|+++||+|+++|+++||+|||+++|+|.|+|+.||++|
T Consensus 3 ~~~~~E~la~y~D~~lkk~~~~k~~~~~e~e~~L~~v~~lf~~l~~KDvF~~~Y~~~LakRLL~~~s~s~d~E~~~i~kL 82 (382)
T 3dpl_C 3 ESKCPEELANYCDMLLRKTPLSKKLTSEEIEAKLKEVLKKLKYVQNKDVFMRYHKAHLTRRLILDISADSEIEENMVEWL 82 (382)
T ss_dssp CCCSHHHHHHHHHHHHBSSHHHHTSCHHHHHHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHTTCBSCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHH
Confidence 46899999999999999863 24578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCC--hhhHhHHHHHHHHHHhHHHHHHHHHHHhcCCCCCCCcceEEEEeecCCCCCCC-CCCccCcHHHHHHHHHHH
Q 003927 508 KQQCGG--QFTSKMEGMVTDLTLARENQTSFEEYLSNNPNANPGIDLTVTVLTTGFWPSYK-SFDLNLPAEMVKCVEVFR 584 (786)
Q Consensus 508 k~~~G~--~~t~kl~~M~~D~~~S~~l~~~F~~~~~~~~~~~~~~~f~v~VLt~~~WP~~~-~~~~~lP~~l~~~~~~F~ 584 (786)
| +||. +||+||++||+||..|++++..|++++.+.+....+++|+|.|||+|+||.++ ..++.||++|+.+++.|+
T Consensus 83 K-~cG~~~~ft~kle~M~kDi~~S~~l~~~f~~~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~~lP~~l~~~~~~F~ 161 (382)
T 3dpl_C 83 R-EVGMPADYVNKLARMFQDIKVSEDLNQAFKEMHKNNKLALPADSVNIKILNAGAWSRSSEKVFVSLPTELEDLIPEVE 161 (382)
T ss_dssp H-HTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC--CCCGGGEEEEEEEHHHHCCCSCCCCCCCCHHHHTTHHHHH
T ss_pred H-HcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCceEEEEccCCcCCCCCCCCCccCCHHHHHHHHHHH
Confidence 9 9997 99999999999999999999999998765432224689999999999999984 568999999999999999
Q ss_pred HHHhhcCCCceeEeecCcceEEEEeEecCeeEEEEEcHHHHHHHHhhcCC--CCccHHHHHHHhCCCHHHHHHHHhHhhh
Q 003927 585 EFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSC 662 (786)
Q Consensus 585 ~~Y~~k~~~RkL~W~~~l~~~~i~~~~~~~~~~l~vs~~Q~~ILllFN~~--~~lt~~ei~~~t~l~~~~l~~~L~~L~~ 662 (786)
+||..+|+||+|+|+|++|+|+|++.|++++|+|+||++||+||++||+. +++|++||++.||+++++|+++|++|++
T Consensus 162 ~fY~~~~~gRkL~W~~~lg~~~l~~~~~~~~~~l~vs~~Qa~ILllFn~~~~~~lt~~ei~~~t~i~~~~L~r~L~sL~~ 241 (382)
T 3dpl_C 162 EFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVA 241 (382)
T ss_dssp HHHHTTSSSEEEEECGGGCEEEEEEECSSCEEEEEEEHHHHHHHGGGTTCTTCCEEHHHHHHHHCCCHHHHHHHHHHHHC
T ss_pred HHHHhcCCCCEEEEecCcccEEEEEEeCCceEEEEEcHHHHHHHHHhccCCCCcCcHHHHHHHHCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999985 7999999999999999999999999987
Q ss_pred c---cccccccCCC---CCCCCCCCeEEEccCCCCC-----cceEeecCCC------chhhhhHHHhHHHHhhhhhccee
Q 003927 663 A---KYKILNKEPN---TKTISPTDHFEFNSKFTDK-----MRRIKIPLPP------VDEKKKVIEDVDKDRRYAIDASI 725 (786)
Q Consensus 663 ~---k~kiL~~~~~---~~~i~~~~~f~~N~~F~~~-----~~ki~i~~~~------~~e~~~~~~~v~~dR~~~i~A~I 725 (786)
. |++||.++|. ++.+.++|.|.+|.+|+++ .+|++|+.+. ..+.+++.++|++||++.|||||
T Consensus 242 ~~k~k~~iL~~~~~~~~~~~~~~~d~f~~N~~F~~~k~~k~~~r~ki~~~~~~q~~~~~e~~~~~~~v~edR~~~i~AaI 321 (382)
T 3dpl_C 242 FPKLKRQVLLYEPQVNSPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAI 321 (382)
T ss_dssp CTTCSSCSEEESSCCSSGGGCCTTCEEEECTTCCEESSSSEESEEEEECCTTTTSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhcceeeecCCccccCcCCCCCEEEEcCCCcCCcccccceeEEEecccccccccchhhhhhHHHHHHHhhheeeEEE
Confidence 3 5789998875 4678899999999999862 2667776542 13456678899999999999999
Q ss_pred eeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCceeecC
Q 003927 726 VRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 786 (786)
Q Consensus 726 VRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y~Y~a 786 (786)
|||||+||+|+|++|+.||++|+++||.|++.+||+|||+|||||||+||++|+++|+|+|
T Consensus 322 VRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 322 IQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHHHTTSSEECHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred ehhhhccCcccHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 9999999999999999999999999999999999999999999999999999999999998
No 4
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=100.00 E-value=5.9e-70 Score=607.18 Aligned_cols=366 Identities=26% Similarity=0.495 Sum_probs=329.5
Q ss_pred CCHHHhHHHHHHHHHHHHHHhcCCCCCCCChhhhHHhhhcccccccchhHHHHHHHHhhhhhhhhhhhhhhhhcccchhh
Q 003927 9 IDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVIHNFFLAFLWYCFFFFFSKKSVY 88 (786)
Q Consensus 9 ~~~~~~W~~~~~~i~~~~~~l~~~~~~~~~~~~ym~~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lY 88 (786)
.+++++|+.|++||+.|.+ +.+ +.-.||+||+
T Consensus 28 ~~~~~~W~~L~~ai~~I~~---~~~----~~~s~eeLY~----------------------------------------- 59 (410)
T 4ap2_B 28 KYVNSIWDLLKNAIQEIQR---KNN----SGLSFEELYR----------------------------------------- 59 (410)
T ss_dssp HHHHHHHHHHHHHHHHHHT---TCC----TTCCHHHHHH-----------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHh---cCC----CCCCHHHHHH-----------------------------------------
Confidence 4599999999999998853 322 2345888888
Q ss_pred hHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcC
Q 003927 89 RTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIARR 168 (786)
Q Consensus 89 ~~vY~~c~~~~~~~~~e~LY~~l~~~l~~~l~~~v~~~l~~~~~e~~L~~~~~~W~~~~~~~~~l~~vF~YLdR~yv~~~ 168 (786)
+||++|+++ +|++||+++++.+++|+.+.+.+.+....++.||+.|.+.|++|+.++.+|+++|+||||+||+++
T Consensus 60 -~vy~lc~~k----~g~~LY~~l~~~~~~~l~~~v~~~l~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLDR~yv~~~ 134 (410)
T 4ap2_B 60 -NAYTMVLHK----HGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQQN 134 (410)
T ss_dssp -HHHHHHHTT----CHHHHHHHHHHHHHHHHHHTHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHT
T ss_pred -HHHHHHhhc----cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhccHHHHHhhHHHHhcC
Confidence 999999998 899999999999999999667788877777789999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhccCcccccHHhhHHHHHHHHH
Q 003927 169 SLPPLNEVGLTCFRDLVYT--ELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKDTA 246 (786)
Q Consensus 169 ~~~~i~~l~l~~fr~~vf~--~l~~~l~~~il~lI~~~R~g~~id~~llk~vi~~l~~lg~~~~~~Y~~~FE~~~L~~t~ 246 (786)
+.++|+++|+.+||++||. ++++++.++++++|+++|+|+.||+.+|+++++||++||.+.+.+|.+.||++||++|+
T Consensus 135 ~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~vY~~~FE~~fL~~T~ 214 (410)
T 4ap2_B 135 NVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEMSA 214 (410)
T ss_dssp TCCCHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999997 79999999999999999999999999999999999999998889999999999999999
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHccccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhccCChh
Q 003927 247 AYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDKVE 326 (786)
Q Consensus 247 ~yY~~~s~~~l~~~s~~eYl~kve~~l~eE~~r~~~yL~~st~~kl~~~l~~~LI~~~~~~ll~~~~s~~~~ll~~~~~~ 326 (786)
+||+.+|+.|++++++++||++|+.+|++|.+||+.||+++|.++|.++|+++||.+|.+.|++++++||..||++++.+
T Consensus 215 ~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL~~sT~~kL~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~~~ 294 (410)
T 4ap2_B 215 EFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGKTE 294 (410)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHTGGGHHHHHTCTTTSHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred hHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHhcC
Q 003927 327 DLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDCFQ 406 (786)
Q Consensus 327 dL~~~y~L~~~~~~~l~~l~~~~~~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~ 406 (786)
||++||+||+|+|+|+++|+..|++||++.|.+++.+... ..+|..||+.||++|++|+.++..||+
T Consensus 295 dL~~mY~L~~rv~~gl~~L~~~~~~~I~~~G~~iv~~~~~-------------~~~~~~~V~~LL~l~~k~~~iv~~~F~ 361 (410)
T 4ap2_B 295 DLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGE-------------GKNPVDYRQGLDDLKSRFDRFLLESFN 361 (410)
T ss_dssp HHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcccc-------------ccChHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999976532 246889999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHH
Q 003927 407 NHTLFHKSLKEAFEVFCNKGVAGSSSAELLATFCDNI 443 (786)
Q Consensus 407 ~~~~f~~~l~~af~~~iN~~~~~~~~~e~La~y~D~~ 443 (786)
+|+.|..++++||+.|||.+ .++||+||+|||.-
T Consensus 362 ~d~~f~~al~~AF~~fiN~~---~~spElla~y~D~~ 395 (410)
T 4ap2_B 362 NDRLFKQTIAGDFEYFLNLN---SRSPEYLAENLYFQ 395 (410)
T ss_dssp TCHHHHHHHHHHHHHHHHHC-----------------
T ss_pred CCHHHHHHHHHHHHHHHcCC---CCCHHHHHHHccCc
Confidence 99999999999999999998 47889999999974
No 5
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B
Probab=100.00 E-value=9.2e-68 Score=582.29 Aligned_cols=354 Identities=25% Similarity=0.508 Sum_probs=282.3
Q ss_pred CcCCHHHhHHHHHHHHHHHHHHhcCCCCCCCChhhhHHhhhcccccccchhHHHHHHHHhhhhhhhhhhhhhhhhcccch
Q 003927 7 KTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVIHNFFLAFLWYCFFFFFSKKS 86 (786)
Q Consensus 7 ~~~~~~~~W~~~~~~i~~~~~~l~~~~~~~~~~~~ym~~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (786)
.+.+++++|+.|++||+.|.+ +. .+.-.||+||+
T Consensus 9 ~~~~~~~~W~~L~~ai~~I~~---~~----~~~~s~e~LY~--------------------------------------- 42 (364)
T 4eoz_B 9 DEKYVNSIWDLLKNAIQEIQR---KN----NSGLSFEELYR--------------------------------------- 42 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT---TC----GGGCCHHHHHH---------------------------------------
T ss_pred ChhhHHHHHHHHHHHHHHHHh---cC----CCCCCHHHHHH---------------------------------------
Confidence 446899999999999998853 32 22445888888
Q ss_pred hhhHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhh
Q 003927 87 VYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFIA 166 (786)
Q Consensus 87 lY~~vY~~c~~~~~~~~~e~LY~~l~~~l~~~l~~~v~~~l~~~~~e~~L~~~~~~W~~~~~~~~~l~~vF~YLdR~yv~ 166 (786)
+||++|+++ +|++||+++++.+++|+.+.+.+.+.+..++.||+.|.+.|++|+.++.+|+++|+||||+||+
T Consensus 43 ---~vy~lc~~k----~g~~LY~~l~~~~~~~l~~~v~~~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv~ 115 (364)
T 4eoz_B 43 ---NAYTMVLHK----HGEKLYTGLREVVTEHLINKVREDVLNSLNNNFLQTLNQAWNDHQTAMVMIRDILMYMDRVYVQ 115 (364)
T ss_dssp ---HHHHHHHTT----CHHHHHHHHHHHHHHHHHHTHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTG
T ss_pred ---HHHHHHhhh----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 999999998 8999999999999999996677888777777899999999999999999999999999999999
Q ss_pred cCCCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhccCcccccHHhhHHHHHHH
Q 003927 167 RRSLPPLNEVGLTCFRDLVYT--ELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAMLKD 244 (786)
Q Consensus 167 ~~~~~~i~~l~l~~fr~~vf~--~l~~~l~~~il~lI~~~R~g~~id~~llk~vi~~l~~lg~~~~~~Y~~~FE~~~L~~ 244 (786)
+++.++|+++|+.+||++||. ++++++.++++++|+++|+|+.||+.+|+++++||++||.+.+.+|.+.||++||++
T Consensus 116 ~~~~~~I~~lgl~~fr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id~~lik~~i~ml~~L~~~~~~~Y~~~FE~~fL~~ 195 (364)
T 4eoz_B 116 QNNVENVYNLGLIIFRDQVVRYGCIRDHLRQTLLDMIARERKGEVVDRGAIRNACQMLMILGLEGRSVYEEDFEAPFLEM 195 (364)
T ss_dssp GGTCCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSSSHHHHHHTHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 999999999999999999997 799999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHccccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhccCC
Q 003927 245 TAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRDDK 324 (786)
Q Consensus 245 t~~yY~~~s~~~l~~~s~~eYl~kve~~l~eE~~r~~~yL~~st~~kl~~~l~~~LI~~~~~~ll~~~~s~~~~ll~~~~ 324 (786)
|++||+.+|++|++++++++||++|+.+|++|.+||+.||+++|.++|.++|+++||.+|.+.|++++++||..||++++
T Consensus 196 t~~fY~~es~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~~~~e~~LI~~h~~~ll~~e~~g~~~lL~~~~ 275 (364)
T 4eoz_B 196 SAEFFQMESQKFLAENSASVYIKKVEARINEEIERVMHCLDKSTEEPIVKVVERELISKHMKTIVEMENSGLVHMLKNGK 275 (364)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHTTTTHHHHHTCTTTSHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred hhhHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHh
Q 003927 325 VEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVNDC 404 (786)
Q Consensus 325 ~~dL~~~y~L~~~~~~~l~~l~~~~~~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~ 404 (786)
.+||++||+||+|+|+|+++|+..|++||++.|.+++.+... ..+|..||+.||++|++|+.++..|
T Consensus 276 ~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~~~-------------~~~~~~~V~~LL~l~~k~~~iv~~~ 342 (364)
T 4eoz_B 276 TEDLGCMYKLFSRVPNGLKTMCECMSSYLREQGKALVSEEGE-------------GKNPVDYRQGLDDLKSRFDRFLLES 342 (364)
T ss_dssp HHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHTC-----------------------------------------------
T ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhCccc-------------cCChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999976532 2468899999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHhhCC
Q 003927 405 FQNHTLFHKSLKEAFEVFCNKG 426 (786)
Q Consensus 405 F~~~~~f~~~l~~af~~~iN~~ 426 (786)
|++|+.|..++++||+.|||.|
T Consensus 343 F~~d~~f~~al~~af~~fiN~n 364 (364)
T 4eoz_B 343 FNNDRLFKQTIAGDFEYFLNLN 364 (364)
T ss_dssp ----------------------
T ss_pred cCCCHHHHHHHHHHHHHhhcCc
Confidence 9999999999999999999975
No 6
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus}
Probab=100.00 E-value=4.6e-66 Score=573.70 Aligned_cols=358 Identities=20% Similarity=0.463 Sum_probs=327.3
Q ss_pred CCCcCCHHHhHHHHHHHHHHHHHHhcCCCCCCCChhhhHHhhhcccccccchhHHHHHHHHhhhhhhhhhhhhhhhhccc
Q 003927 5 ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVIHNFFLAFLWYCFFFFFSK 84 (786)
Q Consensus 5 ~~~~~~~~~~W~~~~~~i~~~~~~l~~~~~~~~~~~~ym~~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (786)
++++++||++|+.|++||++|.+ .+++++..||++|+
T Consensus 9 ~~~~~~~e~~W~~L~~ai~~I~~------~~~~~~~s~e~LY~------------------------------------- 45 (391)
T 2wzk_A 9 NKGSLQFEDKWDFMHPIVLKLLR------QESVTKQQWFDLFS------------------------------------- 45 (391)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHH------TCCCCHHHHHHHHH-------------------------------------
T ss_pred CCccccHHHHHHHHHHHHHHHHh------CCCCChHHHHHHHH-------------------------------------
Confidence 45679999999999999999865 35788999999999
Q ss_pred chhhhHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhh
Q 003927 85 KSVYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREKHDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYF 164 (786)
Q Consensus 85 ~~lY~~vY~~c~~~~~~~~~e~LY~~l~~~l~~~l~~~v~~~l~~~~~e~~L~~~~~~W~~~~~~~~~l~~vF~YLdR~y 164 (786)
+||++|+++ +.+|++||+++++++++|+...+.+.....+++.+|+.|.+.|.+|+.++.+|+++|+||||+|
T Consensus 46 -----~vy~lc~~~--~~~~~~LY~~l~~~~~~~l~~~~~~~~~~~~~e~~L~~~~~~W~~~~~~~~~i~~if~YLdR~y 118 (391)
T 2wzk_A 46 -----DVHAVCLWD--DKGSSKIHQALKEDILEFIKQAQARVLSHQDDTALLKAYIVEWRKFFTQCDILPKPFCQLEVTL 118 (391)
T ss_dssp -----HHHHHHHHC--TTHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHTTTTTGGGHHHHTTS
T ss_pred -----HHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999985 2379999999999999999986544333345679999999999999999999999999999999
Q ss_pred hhcC--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhccC---ccccc
Q 003927 165 IARR--------SLPPLNEVGLTCFRDLVYTELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMG---QMDYY 233 (786)
Q Consensus 165 v~~~--------~~~~i~~l~l~~fr~~vf~~l~~~l~~~il~lI~~~R~g~~id~~llk~vi~~l~~lg~~---~~~~Y 233 (786)
|+++ +.++|+++|+.+||++||.++++++.++++.+|+++|+|+.||+.+|+++++||+.||.+ ++.+|
T Consensus 119 v~~~~~~~~~~~~~~~I~~lgL~~fr~~v~~~i~~~l~~~ll~lI~~eR~Ge~id~~llk~vi~~l~~L~~~~~~~l~vY 198 (391)
T 2wzk_A 119 LGKQSSNKKSNMEDSIVRKLMLDTWNESIFSNIKNRLQDSAMKLVHAERLGEAFDSQLVIGVRESYVNLCSNPEDKLQIY 198 (391)
T ss_dssp TTC--------CTTCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHSCCCSSCTTHHH
T ss_pred HhccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHccCccccHHHh
Confidence 9653 367999999999999999999999999999999999999999999999999999999964 48899
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHccccC----CCcHHHHHHHHHHHHHHHHHHHHH
Q 003927 234 ENDFETAMLKDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLH----SSSEPKLLEKVQHELLSVYANQLL 309 (786)
Q Consensus 234 ~~~FE~~~L~~t~~yY~~~s~~~l~~~s~~eYl~kve~~l~eE~~r~~~yL~----~st~~kl~~~l~~~LI~~~~~~ll 309 (786)
.+.||++||++|++||+.+|++|++++++++||++|+.+|++|.+||+.||+ ++|.++|.++|+++||.+|.+.|+
T Consensus 199 ~~~FE~~fL~~T~~fY~~es~~~l~~~~~~~Yl~~ve~rL~eE~~R~~~yL~~~~~~sT~~kl~~~~e~~LI~~h~~~ll 278 (391)
T 2wzk_A 199 RDNFEKAYLDSTERFYRTQAPSYLQQNGVQNYMKYADAKLKEEEKRALRYLETRRECNSVEALMECCVNALVTSFKETIL 278 (391)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCCSHHHHHHHHHHHHHTGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCcCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 999999999999999999999997
Q ss_pred HhhhhhhHhhhccCChhhHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhcccccccchhHHHHH
Q 003927 310 EKEHSGCHALLRDDKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRK 389 (786)
Q Consensus 310 ~~~~s~~~~ll~~~~~~dL~~~y~L~~~~~~~l~~l~~~~~~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 389 (786)
+ ||..||++++.+||++||+||+|+|+|+++|+..|++||++.|.+++.+..+. ...+|..||+.
T Consensus 279 ~----~~~~lL~~~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~~v~~~~~~-----------~~~~~~~~V~~ 343 (391)
T 2wzk_A 279 A----ECQGMIKRNETEKLHLMFSLMDKVPNGIEPMLKDLEEHIISAGLADMVAAAET-----------ITTDSEKYREQ 343 (391)
T ss_dssp T----THHHHHHTTCHHHHHHHHHHHTTSTTCSHHHHHHHHHHHHHHHHHHHHHHGGG-----------TTTCHHHHHHH
T ss_pred H----HHHHHHHcCCHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHhcccc-----------ccCCHHHHHHH
Confidence 5 69999999999999999999999999999999999999999999997643211 13578999999
Q ss_pred HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhCCC
Q 003927 390 VIELHDKYLAYVNDCFQNHTLFHKSLKEAFEVFCNKGV 427 (786)
Q Consensus 390 ll~l~~k~~~lv~~~F~~~~~f~~~l~~af~~~iN~~~ 427 (786)
||++|++|+.+|..||++|+.|.+++++||+.|||.+.
T Consensus 344 LL~l~~k~~~lv~~~F~~d~~f~~al~~af~~fiN~~~ 381 (391)
T 2wzk_A 344 LDTLFNRFSKLVKEAFQDDPRFLTARDKAYKAVVNDAT 381 (391)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCch
Confidence 99999999999999999999999999999999999763
No 7
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens}
Probab=100.00 E-value=2.2e-64 Score=553.32 Aligned_cols=344 Identities=26% Similarity=0.529 Sum_probs=313.8
Q ss_pred CcCCHHHhHHHHHHHHHHHHHHhcCCCCCCCChhhhHHhhhcccccccchhHHHHHHHHhhhhhhhhhhhhhhhhcccch
Q 003927 7 KTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYTYLFQPHLVSAFVNILLLVIHNFFLAFLWYCFFFFFSKKS 86 (786)
Q Consensus 7 ~~~~~~~~W~~~~~~i~~~~~~l~~~~~~~~~~~~ym~~yt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (786)
.+.+++++|+.|++||++|.+ +.+ +.-.||+||+
T Consensus 6 ~~~~~~~~W~~L~~ai~~I~~---~~~----~~~s~eeLY~--------------------------------------- 39 (354)
T 4a64_A 6 PENYTDETWQKLKEAVEAIQN---STS----IKYNLEELYQ--------------------------------------- 39 (354)
T ss_dssp CSSSTTHHHHHHHHHHHHHHT---TCC----CCSCHHHHHH---------------------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHh---CCC----CCCCHHHHHH---------------------------------------
Confidence 446899999999999998853 322 2335888888
Q ss_pred hhhHHhhhhccCCCCCchHHHHHHHHHHHHHHHHhccccccccc-CcHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhh
Q 003927 87 VYRTIYNMCTQKPPHDYSQQLYDKYRESFEEYISSTVLPSIREK-HDEFMLRELVKRWSNHKVMVRWLSRFFHYLDRYFI 165 (786)
Q Consensus 87 lY~~vY~~c~~~~~~~~~e~LY~~l~~~l~~~l~~~v~~~l~~~-~~e~~L~~~~~~W~~~~~~~~~l~~vF~YLdR~yv 165 (786)
+||++|+++ +|++||+++++.+++|+.+.+.+..... +++.||+.|.+.|++|+.++.+|+++|+||||+||
T Consensus 40 ---~vy~lc~~~----~g~~LY~~l~~~~~~~l~~~~~~~~~~~~~~~~~L~~~~~~W~~~~~~~~~i~~if~YLdR~yv 112 (354)
T 4a64_A 40 ---AVENLCSYK----ISANLYKQLRQICEDHIKAQIHQFREDSLDSVLFLKKIDRCWQNHCRQMIMIRSIFLFLDRTYV 112 (354)
T ss_dssp ---HHHHHHHHS----CHHHHHHHHHHHHHHHHHHTTGGGGCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHCST
T ss_pred ---HHHHHHhcC----cHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 999999998 8999999999999999998765444333 35689999999999999999999999999999999
Q ss_pred hcCC-CCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhccCcccccHHhhHHHHH
Q 003927 166 ARRS-LPPLNEVGLTCFRDLVYT--ELNGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYENDFETAML 242 (786)
Q Consensus 166 ~~~~-~~~i~~l~l~~fr~~vf~--~l~~~l~~~il~lI~~~R~g~~id~~llk~vi~~l~~lg~~~~~~Y~~~FE~~~L 242 (786)
++++ .++|+++|+.+||++||. ++++++.++++++|+++|+|+.||+++|+++++||+.| .+|.+.||++||
T Consensus 113 ~~~~~~~~I~~lgL~lfr~~v~~~~~i~~~l~~~ll~lI~~eR~Ge~id~~lik~~i~ml~~L-----~vY~~~FE~~fL 187 (354)
T 4a64_A 113 LQNSMLPSIWDMGLELFRAHIISDQKVQNKTIDGILLLIERERNGEAIDRSLLRSLLSMLSDL-----QIYQDSFEQRFL 187 (354)
T ss_dssp TTSCCSCCHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT-----TCHHHHTHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhh-----hhhHHHHHHHHH
Confidence 9876 799999999999999997 69999999999999999999999999999999999986 689999999999
Q ss_pred HHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHccccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhcc
Q 003927 243 KDTAAYYSRKASNWILEDSCPDYMLKAEECLKREKDRVSHYLHSSSEPKLLEKVQHELLSVYANQLLEKEHSGCHALLRD 322 (786)
Q Consensus 243 ~~t~~yY~~~s~~~l~~~s~~eYl~kve~~l~eE~~r~~~yL~~st~~kl~~~l~~~LI~~~~~~ll~~~~s~~~~ll~~ 322 (786)
++|++||+.+|+.|++++++++||++|+.+|++|.+||+.||+++|.++|.++|+++||.+|.+.|+ ++||..||++
T Consensus 188 ~~t~~fY~~e~~~~l~~~~~~~Yl~~ve~rl~eE~~R~~~yL~~~T~~~l~~~~e~~LI~~h~~~ll---~~~~~~lL~~ 264 (354)
T 4a64_A 188 EETNRLYAAEGQKLMQEREVPEYLHHVNKRLEEEADRLITYLDQTTQKSLIATVEKQLLGEHLTAIL---QKGLNNLLDE 264 (354)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHTGGGHHHHH---HHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999999999999999999999988 3789999999
Q ss_pred CChhhHHHHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHH
Q 003927 323 DKVEDLSRMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLAYVN 402 (786)
Q Consensus 323 ~~~~dL~~~y~L~~~~~~~l~~l~~~~~~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~ 402 (786)
++.+||++||+||+|+|+|+++|+..|++||++.|.+++.+. .+|..||+.||++|++|+.++.
T Consensus 265 ~~~~dL~~mY~L~~rv~~gl~~l~~~~~~~I~~~G~~iv~~~----------------~~~~~~V~~LL~l~~k~~~iv~ 328 (354)
T 4a64_A 265 NRIQDLSLLYQLFSRVRGGVQVLLQQWIEYIKAFGSTIVINP----------------EKDKTMRQELDDFKDKVDHIID 328 (354)
T ss_dssp TCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHSC----------------CSSSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcCc----------------cchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998532 2466899999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHHhhCCC
Q 003927 403 DCFQNHTLFHKSLKEAFEVFCNKGV 427 (786)
Q Consensus 403 ~~F~~~~~f~~~l~~af~~~iN~~~ 427 (786)
.||++|+.|.+++++||+.|||.++
T Consensus 329 ~~F~~d~~f~~al~~af~~fiN~~~ 353 (354)
T 4a64_A 329 ICFLKNEKFINAMKEAFETFINKRP 353 (354)
T ss_dssp HHSTTCHHHHHHHHHHHHTC-----
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999873
No 8
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=99.94 E-value=1.1e-27 Score=203.24 Aligned_cols=82 Identities=33% Similarity=0.653 Sum_probs=79.6
Q ss_pred hhhhhHHHhHHHHhhhhhcceeeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCcee
Q 003927 704 DEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFR 783 (786)
Q Consensus 704 ~e~~~~~~~v~~dR~~~i~A~IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y~ 783 (786)
+|.+++.+.+++||++.||||||||||+||+|+|++|+++|++||+++|+|++.+||+|||.|||||||+|+++| ++|+
T Consensus 7 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~ 85 (88)
T 3o2p_E 7 TEDERIEKELNTERQIFLEACIVRIMKAKRNLPHTTLVNECIAQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYA 85 (88)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEE
T ss_pred chHHHHHHHHHHHhhhhhheeeehhhcccccccHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEE
Confidence 577788999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred ecC
Q 003927 784 YLA 786 (786)
Q Consensus 784 Y~a 786 (786)
|+|
T Consensus 86 YlA 88 (88)
T 3o2p_E 86 YLA 88 (88)
T ss_dssp ECC
T ss_pred eeC
Confidence 998
No 9
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=99.93 E-value=6.9e-28 Score=199.72 Aligned_cols=76 Identities=49% Similarity=0.741 Sum_probs=73.8
Q ss_pred HhHHHHhhhhhcceeeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCceeecC
Q 003927 711 EDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 786 (786)
Q Consensus 711 ~~v~~dR~~~i~A~IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y~Y~a 786 (786)
+.|++||++.||||||||||+||+|+|++|++||++|++++|+|++.+||+|||.|||||||+|+++|+++|+|+|
T Consensus 2 k~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 2 SNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHSEEEHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred cchhhhhhheEeeEEeeeecccceeeHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999999998
No 10
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=99.93 E-value=1.5e-27 Score=204.74 Aligned_cols=83 Identities=47% Similarity=0.702 Sum_probs=78.3
Q ss_pred hhhhhHHHhHHHHhhhhhcceeeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCcee
Q 003927 704 DEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFR 783 (786)
Q Consensus 704 ~e~~~~~~~v~~dR~~~i~A~IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y~ 783 (786)
.|..++.+.|++||++.||||||||||+||+|+|++|+.+|++||+++|.|++.+||+|||.|||||||+|+++|+++|+
T Consensus 10 ~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~~y~ 89 (92)
T 1iuy_A 10 PERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYT 89 (92)
T ss_dssp CCCCCCCSCSCCCTTTHHHHHHHHHHHHHCEEEHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEE
T ss_pred HHHHHHHHHHHHHHHHHeeeeeeehhhccccccHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCeeE
Confidence 34556778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q 003927 784 YLA 786 (786)
Q Consensus 784 Y~a 786 (786)
|+|
T Consensus 90 Y~A 92 (92)
T 1iuy_A 90 YVA 92 (92)
T ss_dssp EC-
T ss_pred ecC
Confidence 998
No 11
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.92 E-value=7.5e-27 Score=203.11 Aligned_cols=81 Identities=54% Similarity=0.801 Sum_probs=77.5
Q ss_pred hhhhhHHHhHHHHhhhhhcceeeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCcee
Q 003927 704 DEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFR 783 (786)
Q Consensus 704 ~e~~~~~~~v~~dR~~~i~A~IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y~ 783 (786)
+|..++.+.|++||++.||||||||||+||+|+|++|+.+|++||+ |+|++.+||+|||.|||||||+|+++|+++|+
T Consensus 15 ~e~~~t~~~v~~dR~~~iqAaIVRIMK~rK~l~h~~Lv~eV~~ql~--F~p~~~~IKk~IE~LIereYleR~~~d~~~y~ 92 (101)
T 2do7_A 15 EEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLK--FPVKPADLKKRIESLIDRDYMERDKENPNQYN 92 (101)
T ss_dssp CCCSSCCSHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHCS--SCCCHHHHHHHHHHHHHTTSEEECSSCTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhhhHHhcCCCCCCeEE
Confidence 4556678899999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred ecC
Q 003927 784 YLA 786 (786)
Q Consensus 784 Y~a 786 (786)
|+|
T Consensus 93 YlA 95 (101)
T 2do7_A 93 YIA 95 (101)
T ss_dssp ECC
T ss_pred Eec
Confidence 998
No 12
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=83.96 E-value=0.41 Score=38.27 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=46.9
Q ss_pred eeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCceeecC
Q 003927 725 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 786 (786)
Q Consensus 725 IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y~Y~a 786 (786)
.|...|.+|.+..++|-. .|..+.+++..+|+.|.+.|-|.-.-+|+..|.||+
T Consensus 12 Fi~yIk~~Kvv~LedLA~--------~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 12 FINYIKKSKVVLLEDLAF--------QMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHCSEECHHHHHH--------HHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHcCeeeHHHHHH--------HhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEec
Confidence 356678888888887766 488899999999999999999999889999999985
No 13
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=83.36 E-value=1.5 Score=36.92 Aligned_cols=49 Identities=14% Similarity=0.156 Sum_probs=41.8
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 621 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 621 s~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
+..|..||..+.+++.+|..||++.+|++...+.++|..|. +.+++...
T Consensus 23 ~~~~~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~--~~glv~~~ 71 (99)
T 3cuo_A 23 HPKRLLILCMLSGSPGTSAGELTRITGLSASATSQHLARMR--DEGLIDSQ 71 (99)
T ss_dssp SHHHHHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ChHHHHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 46778888888777789999999999999999999999996 56777654
No 14
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=82.06 E-value=2.9 Score=35.35 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=40.5
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCC
Q 003927 621 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPN 673 (786)
Q Consensus 621 s~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~ 673 (786)
+..+..||....+ +..|+.||++.+|++...+.++|..|. +.+++.....
T Consensus 22 ~~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~~ 71 (98)
T 3jth_A 22 NERRLQILCMLHN-QELSVGELCAKLQLSQSALSQHLAWLR--RDGLVTTRKE 71 (98)
T ss_dssp SHHHHHHHHHTTT-SCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEECC
T ss_pred CHHHHHHHHHHhc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEe
Confidence 3456667776666 789999999999999999999999996 5678866543
No 15
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=81.40 E-value=0.65 Score=53.31 Aligned_cols=137 Identities=8% Similarity=0.048 Sum_probs=48.7
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhc---cccccccCCCCCCCCCCCeEEEccCCCCCcceEe
Q 003927 621 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCA---KYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIK 697 (786)
Q Consensus 621 s~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~---k~kiL~~~~~~~~i~~~~~f~~N~~F~~~~~ki~ 697 (786)
+..+..||....+...+|..+|++.+|++...+++.|..|... ..+++... ++.|.++..........
T Consensus 429 ~~~~~~iL~~l~~~~~it~~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~--------g~~y~L~~~~~~~~~~~- 499 (583)
T 3lmm_A 429 DYRIAIVLYLLFQRPFITIDVVARGLQSGKEAARNALEAARQTTVAGAPLIIAH--------DGVWLLGNACREILRKV- 499 (583)
T ss_dssp CHHHHHHHHHHHHSSSBCHHHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEE--------TTEEEECHHHHHHHTSC-
T ss_pred chhHHHHHHHHHHCCCcCHHHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEe--------CCEEEECHHHHHHhccc-
Confidence 3567788877677789999999999999999999999999741 14566543 36788887643211100
Q ss_pred ecCCCchhhhhHHHhHHHHhhhhhcceeeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCC
Q 003927 698 IPLPPVDEKKKVIEDVDKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKS 777 (786)
Q Consensus 698 i~~~~~~e~~~~~~~v~~dR~~~i~A~IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~ 777 (786)
+.. .........+. ....+..|+..++.++.++-.++.+- +..+.....+.|..|+++|-|++.+.
T Consensus 500 -~~~--~~~~~~~~~~~---~~~~~~~I~~~l~~~g~it~~di~~l--------~~ls~~qa~~~L~~Lv~~G~l~~~G~ 565 (583)
T 3lmm_A 500 -EPS--PFSPVRYLSTD---QAELTNAAMLWLSEVGDLATSDLMAM--------CGVSRGTAKACVDGLVDEERVVAVGG 565 (583)
T ss_dssp -C------------------------------------------------------------------------------
T ss_pred -ccc--cccccccccCC---hhHHHHHHHHHHHHcCCcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCcEEEeCC
Confidence 000 00000000111 23456779999999999988887763 22456677999999999999999876
Q ss_pred CCC
Q 003927 778 NPN 780 (786)
Q Consensus 778 d~~ 780 (786)
.+.
T Consensus 566 gr~ 568 (583)
T 3lmm_A 566 GRS 568 (583)
T ss_dssp ---
T ss_pred CCc
Confidence 554
No 16
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=81.10 E-value=1.4 Score=35.98 Aligned_cols=41 Identities=22% Similarity=0.182 Sum_probs=34.9
Q ss_pred CCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCC
Q 003927 635 DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTI 677 (786)
Q Consensus 635 ~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i 677 (786)
.+.|+.||++.+|++...+.+.|..|. +.++|.+.+.+..+
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le--~kG~I~R~~ggr~~ 63 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLH--DVGVLEKVNAGKGV 63 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEESCSSSS
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCcEEecCCCCCc
Confidence 789999999999999999999999996 56888877655444
No 17
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=80.99 E-value=1.7 Score=44.11 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=43.5
Q ss_pred EEcHHHHHHHHhhcC--CCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 619 IVTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 619 ~vs~~Q~~ILllFN~--~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
.+|..|..||+...+ .+.+|..||++.++++...+.+.|..|. +.+++.+.+
T Consensus 31 ~lt~~q~~vL~~L~~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe--~~G~i~R~~ 84 (250)
T 1p4x_A 31 DMTIKEFILLTYLFHQQENTLPFKKIVSDLCYKQSDLVQHIKVLV--KHSYISKVR 84 (250)
T ss_dssp SSCHHHHHHHHHHHSCSCSEEEHHHHHHHSSSCGGGTHHHHHHHH--HTTSCEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEecC
Confidence 368899999987765 4589999999999999999999999996 557777653
No 18
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=79.82 E-value=2.3 Score=38.52 Aligned_cols=52 Identities=29% Similarity=0.422 Sum_probs=44.3
Q ss_pred EEEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 618 LIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 618 l~vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+.+|..|..||......+ +|..+|++.+|++...+.++|..|. +.+++.+.+
T Consensus 34 ~~lt~~~~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~--~~Glv~r~~ 85 (146)
T 3tgn_A 34 VALTNTQEHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLV--KEGMLETSK 85 (146)
T ss_dssp SCCCHHHHHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC--
T ss_pred cCCCHHHHHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeEecc
Confidence 347899999999888877 9999999999999999999999997 567887653
No 19
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=79.69 E-value=1.7 Score=39.34 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=45.0
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|..||......+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 34 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 84 (140)
T 3hsr_A 34 LTYTGYIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLE--KKDYVVRTR 84 (140)
T ss_dssp CCHHHHHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCeEecC
Confidence 678999999988888899999999999999999999999997 557777654
No 20
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=79.31 E-value=1.7 Score=36.75 Aligned_cols=50 Identities=10% Similarity=0.163 Sum_probs=41.4
Q ss_pred EEEcHHHHHHHHhhcC--CCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccc
Q 003927 618 LIVTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 669 (786)
Q Consensus 618 l~vs~~Q~~ILllFN~--~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~ 669 (786)
..++..|..||....+ .+.++..||++.++++...+.++|..|.. -+++.
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~LE~--kglIk 67 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIK 67 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHHHHH--TTSEE
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCCEE
Confidence 3567789999877665 56899999999999999999999999973 35665
No 21
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=78.60 E-value=3.5 Score=34.73 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=43.3
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003927 621 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 688 (786)
Q Consensus 621 s~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~f~~N~~ 688 (786)
+..+..||..+ .+.+|+.||++.+|++...+.++|..|. +.+++.... ..|.++..
T Consensus 30 ~~~r~~Il~~L--~~~~~~~eLa~~l~is~~tv~~~L~~L~--~~Glv~~~~--------g~y~l~~~ 85 (96)
T 1y0u_A 30 NPVRRKILRML--DKGRSEEEIMQTLSLSKKQLDYHLKVLE--AGFCIERVG--------ERWVVTDA 85 (96)
T ss_dssp CHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEET--------TEEEECTT
T ss_pred CHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEC--------CEEEECCC
Confidence 45566677666 4569999999999999999999999996 567776543 26777664
No 22
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=78.41 E-value=2.1 Score=38.88 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=43.9
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 29 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 79 (145)
T 3g3z_A 29 LNYNLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLA--GQGLIEWQE 79 (145)
T ss_dssp CCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecc
Confidence 578899999888777789999999999999999999999997 557777653
No 23
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=77.94 E-value=1.8 Score=36.90 Aligned_cols=50 Identities=24% Similarity=0.214 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|..||..+...+.+|..+|++.+|++...+.++|..|. +.+++.+.
T Consensus 18 l~~~~~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~--~~glv~~~ 67 (109)
T 1sfx_A 18 FKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLL--KRGFVRRE 67 (109)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 577888898888766789999999999999999999999997 45777543
No 24
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=77.35 E-value=4.4 Score=32.96 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=40.9
Q ss_pred HHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003927 626 SALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 688 (786)
Q Consensus 626 ~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~f~~N~~ 688 (786)
.||..+.+.+.+|..||++.+|++...+.+.|..|. +.+++...+.+. ..+..|.++.+
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~--~~GlI~~~~~~~--gr~~~y~l~~~ 62 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLE--KAGMVQRSPLRR--GMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHH--HHTSEEEECCSS--SSSCEEEESSC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeccCC--CCcEEEEEChh
Confidence 355555555679999999999999999999999997 456776432211 12345666544
No 25
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=76.93 E-value=2.6 Score=34.30 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=35.1
Q ss_pred HHHHHhhcCC---CCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 625 ASALLLFNSS---DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 625 ~~ILllFN~~---~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
..||.++.+. +.+|..||++.+|++...+.+.|..|. +.+++...
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~--~~G~I~~~ 64 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEec
Confidence 5565444443 489999999999999999999999996 45666654
No 26
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=76.46 E-value=3.4 Score=37.83 Aligned_cols=50 Identities=6% Similarity=0.153 Sum_probs=43.9
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 41 lt~~~~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le--~~Glv~r~ 90 (155)
T 3cdh_A 41 LRVPEWRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMD--ARGLVTRV 90 (155)
T ss_dssp CCHHHHHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEec
Confidence 578899999988888899999999999999999999999997 45777654
No 27
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=76.26 E-value=1.7 Score=39.31 Aligned_cols=52 Identities=15% Similarity=0.216 Sum_probs=41.2
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 619 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 619 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
.+|..|+.||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 34 ~lt~~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~--~~Glv~r~~ 85 (142)
T 3ech_A 34 DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELE--GRNLVRRER 85 (142)
T ss_dssp CCCHHHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHH--HTTSEEC--
T ss_pred CCCHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEeecc
Confidence 3678899999888877899999999999999999999999997 557777653
No 28
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=75.98 E-value=2.6 Score=38.30 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=44.0
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 619 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 619 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
.++..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 37 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 88 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLE--EKKYIEVNG 88 (148)
T ss_dssp TCCHHHHHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC--
T ss_pred CCCHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeec
Confidence 4778899999888777899999999999999999999999997 457776653
No 29
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=75.45 E-value=3.2 Score=35.32 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=39.8
Q ss_pred EcHHHHHHHHhhcC-CCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~-~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
++..|..+|+.+-. .+.+|..||++.+|++...+.++|..|. +.+++...+
T Consensus 19 l~~~~~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~--~~g~v~~~~ 70 (109)
T 2d1h_A 19 ITDTDVAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLI--ELGLVVRTK 70 (109)
T ss_dssp CCHHHHHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEeec
Confidence 45667766654433 6789999999999999999999999996 457776543
No 30
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=75.23 E-value=2.2 Score=39.01 Aligned_cols=51 Identities=20% Similarity=0.266 Sum_probs=43.5
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 39 lt~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 89 (149)
T 4hbl_A 39 ITYSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLE--QSGWVKRER 89 (149)
T ss_dssp CCHHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEC--
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeeCC
Confidence 678899999888777899999999999999999999999997 557887654
No 31
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=75.11 E-value=2.3 Score=38.00 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhhcCC--CCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~~--~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|..||...... +.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 35 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 87 (127)
T 2frh_A 35 ISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILS--QEDYFDKKR 87 (127)
T ss_dssp CCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHH--HTTSSCCBC
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecC
Confidence 578888888766555 789999999999999999999999997 557777654
No 32
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=74.84 E-value=1.8 Score=39.11 Aligned_cols=51 Identities=24% Similarity=0.207 Sum_probs=44.1
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 35 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 85 (143)
T 3oop_A 35 VTPEQWSVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLL--RKELIVREI 85 (143)
T ss_dssp SCHHHHHHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHH--HCCCeeccC
Confidence 578899999887777899999999999999999999999997 557777654
No 33
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=74.72 E-value=3.8 Score=36.91 Aligned_cols=49 Identities=4% Similarity=0.070 Sum_probs=42.2
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
+|..|+.||.... .+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 35 l~~~~~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~ 83 (146)
T 2gxg_A 35 LSYLDFLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLE--EMGLVVRV 83 (146)
T ss_dssp CCHHHHHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHH--HCCCEEee
Confidence 5788999988877 7889999999999999999999999997 45777654
No 34
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=74.39 E-value=2.9 Score=37.67 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=42.8
Q ss_pred EcHHHHHHHHhh-cCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLF-NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllF-N~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
++..|..||... ...+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 35 l~~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~--~~glv~r~~ 86 (146)
T 2fbh_A 35 LSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLE--SQGLVRRLA 86 (146)
T ss_dssp CTTTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHH--HCCCeeecC
Confidence 467788888877 677889999999999999999999999997 457776543
No 35
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=74.14 E-value=4.6 Score=35.82 Aligned_cols=50 Identities=16% Similarity=0.191 Sum_probs=39.1
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 621 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 621 s~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+..+..||..+...+.+|+.||++.+|++...+.++|..|. ..+++....
T Consensus 41 ~~~rl~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~--~~Glv~~~~ 90 (122)
T 1u2w_A 41 DENRAKITYALCQDEELCVCDIANILGVTIANASHHLRTLY--KQGVVNFRK 90 (122)
T ss_dssp SHHHHHHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEC-
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEE
Confidence 34555677666545679999999999999999999999996 567776543
No 36
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=73.92 E-value=3.1 Score=38.09 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
++..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+
T Consensus 39 lt~~~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r 87 (154)
T 2qww_A 39 LTIQQLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLI--SLGLVVK 87 (154)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEe
Confidence 578899999888777889999999999999999999999997 4577766
No 37
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=73.40 E-value=2.5 Score=37.84 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 27 l~~~~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~--~~glv~~~ 76 (138)
T 3bpv_A 27 LTDAQVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLE--ESGFIERE 76 (138)
T ss_dssp CCHHHHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEee
Confidence 578899999888777889999999999999999999999997 45677654
No 38
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=73.34 E-value=2.8 Score=37.60 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=42.3
Q ss_pred EcHHHHHHHHhhcCC--CCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~~--~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|..||...... +.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 29 lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Gli~r~~ 81 (139)
T 3eco_A 29 ITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLE--RKKLIYRYV 81 (139)
T ss_dssp CCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHH--HCCCEeecC
Confidence 567888888776654 489999999999999999999999997 557776653
No 39
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=73.10 E-value=3 Score=37.21 Aligned_cols=51 Identities=18% Similarity=0.237 Sum_probs=42.1
Q ss_pred EEcHHHHHHHHhhcCCCC--ccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 619 IVTTYQASALLLFNSSDR--LSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 619 ~vs~~Q~~ILllFN~~~~--lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
.++..|..||..+-+.+. +|..||++.+|++...+.++|..|. +.+++.+.
T Consensus 23 gLt~~e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~--~~GlV~r~ 75 (123)
T 3r0a_A 23 NLTKADLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLH--EKEILQRS 75 (123)
T ss_dssp TCCHHHHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEee
Confidence 467889888877665554 9999999999999999999999997 55777653
No 40
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=72.91 E-value=3.7 Score=33.50 Aligned_cols=51 Identities=18% Similarity=0.278 Sum_probs=43.0
Q ss_pred EEcHHHHHHHHhhcCC--CCccHHHHHHHh-----CCCHHHHHHHHhHhhhccccccccC
Q 003927 619 IVTTYQASALLLFNSS--DRLSYSEIMTQL-----NLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 619 ~vs~~Q~~ILllFN~~--~~lt~~ei~~~t-----~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
..+.-+..||-.+.+. ..+|.+||++.+ +++...+-+.|..|. +.+++.+.
T Consensus 14 ~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~--~~Glv~~~ 71 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFD--DAGIVTRH 71 (83)
T ss_dssp CCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred CcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH--HCCCeEEE
Confidence 4577788899888765 589999999999 999999999999997 45777654
No 41
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=72.90 E-value=6.9 Score=33.17 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=43.6
Q ss_pred HHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003927 622 TYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 688 (786)
Q Consensus 622 ~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~f~~N~~ 688 (786)
.....||....+ +..|+.||++.+|++...+.++|..|. ..+++.....|. ...|+++.+
T Consensus 23 ~~r~~Il~~L~~-~~~~~~ela~~l~is~~tvs~~L~~L~--~~Glv~~~~~g~----~~~y~l~~~ 82 (102)
T 3pqk_A 23 PVRLMLVCTLVE-GEFSVGELEQQIGIGQPTLSQQLGVLR--ESGIVETRRNIK----QIFYRLTEA 82 (102)
T ss_dssp HHHHHHHHHHHT-CCBCHHHHHHHHTCCTTHHHHHHHHHH--HTTSEEEECSSS----CCEEEECSS
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEEEeCC----EEEEEECcH
Confidence 444556655554 569999999999999999999999996 567887654432 335666553
No 42
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=72.29 E-value=3.6 Score=37.45 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=43.6
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 38 lt~~~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le--~~Glv~r~~ 88 (152)
T 3bj6_A 38 VTVGQRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQ--RAGLIERRT 88 (152)
T ss_dssp CCHHHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCeeecC
Confidence 578899999888777789999999999999999999999997 457776543
No 43
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=72.04 E-value=2.7 Score=39.02 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=44.0
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 44 lt~~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 94 (162)
T 3k0l_A 44 ISLPQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLL--ANGWIEKAP 94 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCeEecC
Confidence 578899999887777889999999999999999999999997 557777653
No 44
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=71.82 E-value=2.9 Score=37.37 Aligned_cols=50 Identities=16% Similarity=0.156 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
+|..|+.||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~--~~gli~r~ 81 (138)
T 1jgs_A 32 ITAAQFKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLV--CKGWVERL 81 (138)
T ss_dssp SCHHHHHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHH--HCCCEEec
Confidence 578899998887766789999999999999999999999997 45677654
No 45
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=71.70 E-value=3.9 Score=36.61 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=41.6
Q ss_pred EcHHHHHHHHhhcCCC--CccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSD--RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~--~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
+|..|..||......+ .+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 32 lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le--~~Gli~r~ 83 (141)
T 3bro_A 32 LTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRME--IKKLLYRK 83 (141)
T ss_dssp CCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHH--HCCCEEee
Confidence 5678888887766555 79999999999999999999999997 45777654
No 46
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=71.67 E-value=3.7 Score=37.87 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 47 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~glv~r~ 96 (162)
T 2fa5_A 47 MAIPEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLL--ERGFIRRE 96 (162)
T ss_dssp CCHHHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEC-
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeee
Confidence 678899999887777889999999999999999999999997 45777654
No 47
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=70.66 E-value=2.6 Score=35.62 Aligned_cols=50 Identities=8% Similarity=0.080 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcCCCCccHHHH----HHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEI----MTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei----~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|..||....+.+.+|..+| ++.++++...+.+.|..|. +.+++.+.
T Consensus 6 lt~~q~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le--~~gli~r~ 59 (99)
T 1tbx_A 6 FFYPEAIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLI--QEGFVKER 59 (99)
T ss_dssp SBCHHHHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 56788999988887788999999 8999999999999999997 45677654
No 48
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=70.36 E-value=2.9 Score=38.79 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=44.0
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 51 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r~~ 101 (161)
T 3e6m_A 51 LPTPKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLV--DEGLAARSI 101 (161)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECC
T ss_pred CCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEeeC
Confidence 578899999888777799999999999999999999999997 557887654
No 49
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=69.77 E-value=3.8 Score=38.34 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhhcC-CCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~-~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
++..|+.||..... .+.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 51 lt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~GlV~r~~ 102 (166)
T 3deu_A 51 LTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLE--DKGLISRQT 102 (166)
T ss_dssp CCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEC-
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHH--HCCCEEeeC
Confidence 56789999887765 5679999999999999999999999997 557887653
No 50
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=69.63 E-value=3.6 Score=36.84 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=43.1
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 619 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 619 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
.++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 28 ~l~~~~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~--~~gli~~~ 78 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLE--ESGYIIRK 78 (142)
T ss_dssp SSCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEec
Confidence 3678899999887776789999999999999999999999997 45677654
No 51
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=69.63 E-value=2.4 Score=37.90 Aligned_cols=50 Identities=10% Similarity=0.271 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~--~~gli~r~ 80 (139)
T 3bja_A 31 ISYVQFGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMK--RDGYVMTE 80 (139)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHH--HCCCeeec
Confidence 578899999888777789999999999999999999999997 45677654
No 52
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=69.50 E-value=3.8 Score=37.42 Aligned_cols=50 Identities=26% Similarity=0.288 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|..||......+.+|..+|++.++++...+.+.|..|. +.+++.+.
T Consensus 45 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~ 94 (153)
T 2pex_A 45 LTYPQYLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQ--AAGLVTRT 94 (153)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHH--HCCCEeec
Confidence 578899999887777889999999999999999999999997 45777654
No 53
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=69.45 E-value=3.1 Score=38.92 Aligned_cols=51 Identities=14% Similarity=0.261 Sum_probs=43.7
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 619 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 619 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
.++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 42 ~lt~~~~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~ 92 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLV--GAELIDRL 92 (168)
T ss_dssp SCCHHHHHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEec
Confidence 3678899999888776789999999999999999999999997 45777654
No 54
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=69.44 E-value=6.7 Score=32.21 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=36.0
Q ss_pred HHHHHHhhcCCC---CccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 624 QASALLLFNSSD---RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 624 Q~~ILllFN~~~---~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+..||..+.+.. .+|..||++.+|++...+.+.|..|. +.+++...+
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le--~~G~I~~~g 61 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLA--KKGKLQKEA 61 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEES
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEecC
Confidence 445555554444 89999999999999999999999996 456666543
No 55
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=69.13 E-value=10 Score=35.36 Aligned_cols=59 Identities=17% Similarity=0.177 Sum_probs=42.2
Q ss_pred HHHHHHHhhcC-CCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003927 623 YQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 688 (786)
Q Consensus 623 ~Q~~ILllFN~-~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~f~~N~~ 688 (786)
+.+.+.|.-+. ...+|.++|++.+++|...+.+.|..|. +.+++.... | ++..|.+..+
T Consensus 30 lr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~--~aGlv~s~r-G----~~GGy~Lar~ 89 (159)
T 3lwf_A 30 LTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLR--NAGIVKSIR-G----AHGGYVLNGD 89 (159)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEC-S----TTCEEEECSC
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCeEEEec-C----CCCceEecCC
Confidence 34444455443 3479999999999999999999999996 678876432 1 3446776553
No 56
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=68.81 E-value=3.8 Score=37.82 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=43.1
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 50 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~Gli~r~ 99 (162)
T 3cjn_A 50 LSTAKMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQ--ADGLVRRE 99 (162)
T ss_dssp CCHHHHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEec
Confidence 578899999888777789999999999999999999999997 45677654
No 57
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=68.74 E-value=2.9 Score=37.38 Aligned_cols=51 Identities=12% Similarity=0.159 Sum_probs=42.8
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 619 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 619 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
.++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 35 ~l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~--~~glv~r~ 85 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLD--KRGLIQRS 85 (140)
T ss_dssp CCCHHHHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHH--HTTCEEEE
T ss_pred CCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEee
Confidence 3578899999887766789999999999999999999999997 44666553
No 58
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=68.32 E-value=4.6 Score=36.25 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=40.7
Q ss_pred EEEcHHHHHHHHhh---cC-C-CCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 618 LIVTTYQASALLLF---NS-S-DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 618 l~vs~~Q~~ILllF---N~-~-~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+-.+.-|+.||+.+ ++ + ...|.++|++.+|++...+.++|..|. +.++|.+.+
T Consensus 28 lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le--~kGlI~~~~ 85 (128)
T 2vn2_A 28 LGLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLL--QKGMIAIEE 85 (128)
T ss_dssp TTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHH--HTTSSEECC
T ss_pred cCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEEe
Confidence 34677787777554 33 2 248999999999999999999999997 557877653
No 59
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=68.17 E-value=6.2 Score=35.53 Aligned_cols=50 Identities=22% Similarity=0.331 Sum_probs=38.2
Q ss_pred EcHHHHHHHHhhc-CCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFN-SSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN-~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|..||.... ..+++|..||++.+|++...+.+.|..|. +.+++.+.
T Consensus 24 l~~~~~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~--~~G~v~r~ 74 (152)
T 1ku9_A 24 LNKSVGAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLE--ELGFVRKV 74 (152)
T ss_dssp CCHHHHHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CChhHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 4456665554332 34679999999999999999999999997 55777665
No 60
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=68.01 E-value=3.1 Score=37.54 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|+.||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 31 l~~~~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~--~~glv~r~ 80 (145)
T 2a61_A 31 ITPAQFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLE--ADGYLTRT 80 (145)
T ss_dssp CCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHH--HCCCeeec
Confidence 578899999887767789999999999999999999999997 45677654
No 61
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=67.99 E-value=4 Score=36.90 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=42.9
Q ss_pred EcHHHHHHHHhhcC-CCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~-~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|..||..... .+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 33 l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le--~~glv~r~ 83 (147)
T 2hr3_A 33 VQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELE--RGGLIVRH 83 (147)
T ss_dssp HHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHH--HCCCEeeC
Confidence 67889999887776 7789999999999999999999999997 45777654
No 62
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=67.68 E-value=4.3 Score=33.13 Aligned_cols=43 Identities=16% Similarity=0.145 Sum_probs=36.0
Q ss_pred HHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 627 ALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 627 ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
|+-..++++.+|++||++.+++++..+++-|..|. +.+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le--~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLE--SMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 55566778899999999999999999999999997 44566555
No 63
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=67.55 E-value=2.8 Score=37.73 Aligned_cols=50 Identities=20% Similarity=0.325 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~--~~gli~r~ 84 (142)
T 2bv6_A 35 LTYPQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRME--QVDLIKRE 84 (142)
T ss_dssp CCHHHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEee
Confidence 578899999888777789999999999999999999999997 45777654
No 64
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=67.49 E-value=10 Score=30.63 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=34.9
Q ss_pred HHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 628 LLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 628 LllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+..+.+++..|..+|+..+|++...+.++|-+|- |.+.+.+.|
T Consensus 21 i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~--kkG~V~~~~ 63 (75)
T 1sfu_A 21 VLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQ--KEDTVKMVP 63 (75)
T ss_dssp HHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEEC
T ss_pred HHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHH--HCCCEecCC
Confidence 4566677779999999999999999999999996 445555543
No 65
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=67.37 E-value=2.3 Score=34.82 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=36.5
Q ss_pred eeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhcccccc
Q 003927 725 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 775 (786)
Q Consensus 725 IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~ 775 (786)
|...++.++.++.++|.. +|..++..|.+-++.|.++|+|+|.
T Consensus 7 Il~~L~~~g~vsv~eLa~--------~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 7 VRDLLALRGRMEAAQISQ--------TLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHSCSBCHHHHHH--------HTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCcHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 555667777787777766 5999999999999999999999997
No 66
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=67.29 E-value=11 Score=34.33 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=40.4
Q ss_pred HHHHHHhhcCC-CCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEcc
Q 003927 624 QASALLLFNSS-DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 687 (786)
Q Consensus 624 Q~~ILllFN~~-~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~f~~N~ 687 (786)
++.+.|.-+.. ..+|.++|++.+|+|...+.+.|..|. +.+++.... | ++..|.+..
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~--~aGlv~s~r-G----~~GGy~Lar 72 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLR--NAGLIRSVR-G----AKGGYQLRV 72 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEECS-S----SSSEEEESS
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCEEEecC-C----CCCCeeecC
Confidence 34444444433 469999999999999999999999996 678875432 1 234577654
No 67
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=67.27 E-value=3.4 Score=37.26 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=42.0
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|+.||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 27 lt~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le--~~gli~r~ 76 (144)
T 1lj9_A 27 LTRGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLE--EQGFIYRQ 76 (144)
T ss_dssp CTTTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEee
Confidence 567788888777767789999999999999999999999997 44677654
No 68
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=67.17 E-value=4 Score=37.01 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 40 l~~~~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le--~~Glv~r~ 89 (150)
T 2rdp_A 40 ITPPQFVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRME--RNGLVARV 89 (150)
T ss_dssp SCHHHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHH--HCCCeeec
Confidence 578899999887776789999999999999999999999997 44677554
No 69
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=67.04 E-value=4.6 Score=33.73 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=36.0
Q ss_pred HHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 627 ALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 627 ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
|+-..++.+.+|++||++.+++++..+++-|..|. +.+.|.+.
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le--~~G~l~R~ 49 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQTPQPLIDAMLERME--AMGKVVRI 49 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHH--TTCCSEEE
T ss_pred HHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 55566778899999999999999999999999997 44566554
No 70
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=66.68 E-value=3.5 Score=37.70 Aligned_cols=50 Identities=20% Similarity=0.267 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 35 l~~~~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le--~~glv~r~ 84 (155)
T 1s3j_A 35 VTPAQLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLE--QKNLIART 84 (155)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeec
Confidence 678899999888777789999999999999999999999997 45677654
No 71
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=66.53 E-value=4.3 Score=37.18 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 42 lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le--~~Gli~r~ 91 (154)
T 2eth_A 42 MKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLE--KRGLVVRE 91 (154)
T ss_dssp SBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEee
Confidence 578899998877766789999999999999999999999997 45677654
No 72
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=66.38 E-value=3.8 Score=37.06 Aligned_cols=51 Identities=22% Similarity=0.316 Sum_probs=43.3
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
++..|..||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 38 l~~~~~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~--~~glv~r~~ 88 (147)
T 1z91_A 38 ITYPQYLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRME--QQGLITRKR 88 (147)
T ss_dssp CCHHHHHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHH--HHTSEECCB
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHH--HCCCEEecc
Confidence 578899999887766789999999999999999999999997 457776543
No 73
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=66.38 E-value=4.7 Score=32.80 Aligned_cols=51 Identities=16% Similarity=0.256 Sum_probs=42.2
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhC----CCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~----l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|..||...-+.+.+|..||++.++ ++...+.+.|..|. +-+++.+.+
T Consensus 7 lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~--~kGlv~r~~ 61 (82)
T 1p6r_A 7 ISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLI--KKGALNHHK 61 (82)
T ss_dssp CCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHH--HCCCeEEEe
Confidence 6788999988776677899999999996 68899999999997 457776653
No 74
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=66.15 E-value=3.1 Score=37.29 Aligned_cols=50 Identities=12% Similarity=0.165 Sum_probs=42.6
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|+.||......+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 34 lt~~~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le--~~glv~r~ 83 (142)
T 2fbi_A 34 LTEQQWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLE--RDGIVRRW 83 (142)
T ss_dssp CCHHHHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEee
Confidence 578899999887776789999999999999999999999997 45677654
No 75
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=66.07 E-value=2.8 Score=38.70 Aligned_cols=51 Identities=12% Similarity=0.176 Sum_probs=42.5
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|..||......+.+|..+|++.+|++...+.+.+..|. +.+++.+.+
T Consensus 48 lt~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 98 (159)
T 3s2w_A 48 IGSGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLV--DEGYVFRQR 98 (159)
T ss_dssp CCTTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEec
Confidence 456788888777667889999999999999999999999997 557776643
No 76
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=66.06 E-value=4.3 Score=37.16 Aligned_cols=51 Identities=25% Similarity=0.345 Sum_probs=41.0
Q ss_pred EcHHHHHHHHhh--cCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLF--NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllF--N~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|..||... ++.+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 33 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le--~~Glv~r~~ 85 (147)
T 4b8x_A 33 LTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLV--RSGLVAKRP 85 (147)
T ss_dssp CCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--hCCCEEEee
Confidence 567777777544 455679999999999999999999999997 557777654
No 77
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=65.91 E-value=2.6 Score=38.40 Aligned_cols=51 Identities=8% Similarity=0.158 Sum_probs=36.3
Q ss_pred EcHHHHHHHHhhcCC--CCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~~--~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|..||...... +.+|..+|++.+|++...+.+.+..|. +-+++.+.+
T Consensus 39 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~--~~Glv~r~~ 91 (148)
T 3jw4_A 39 LNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLE--KKGYIERRI 91 (148)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHH--HTTSBCCC-
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHH--HCCCEEeeC
Confidence 578888888776654 789999999999999999999999997 557776653
No 78
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=65.87 E-value=7.6 Score=31.76 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=38.0
Q ss_pred HHHHHHHHhhcCCCCccHHHHHHHhCCCHH-HHHHHHhHhhhccccccccC
Q 003927 622 TYQASALLLFNSSDRLSYSEIMTQLNLSDD-DVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 622 ~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~-~l~~~L~~L~~~k~kiL~~~ 671 (786)
..+--||.+....+..|..+|++.+|++.. .+.++|..|- +-+++.+.
T Consensus 11 ~~~~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le--~eGlV~~~ 59 (79)
T 1xmk_A 11 EIKEKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDME--RQGDVYRQ 59 (79)
T ss_dssp HHHHHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHH--HTTSEEEE
T ss_pred hHHHHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHH--HCCCEEec
Confidence 345566666666678999999999999998 9999999996 55666544
No 79
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=65.81 E-value=7.1 Score=36.64 Aligned_cols=46 Identities=17% Similarity=0.177 Sum_probs=36.6
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 623 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 623 ~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
+++.+.|.-+....+|.++|++.+|+|...+.+.|..|. +.+++..
T Consensus 15 lr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~--~aGlv~s 60 (162)
T 3k69_A 15 VHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLH--KHGYLTG 60 (162)
T ss_dssp HHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHH--HTTSSEE
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEe
Confidence 444555555555679999999999999999999999996 6677754
No 80
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=65.42 E-value=5.2 Score=36.39 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=41.0
Q ss_pred EcHHHHHHHHhhc-CCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFN-SSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN-~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|..||.... ..+.+|..+|++.++++...+.+.+..|. +.+++.+.+
T Consensus 37 lt~~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~Glv~r~~ 88 (150)
T 3fm5_A 37 LRVRSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELE--ERGLVVRTL 88 (150)
T ss_dssp CCHHHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHH--TTTSEEC--
T ss_pred CCHHHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHH--HCCCEEeeC
Confidence 5678888887664 44578999999999999999999999997 557777653
No 81
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=64.73 E-value=4 Score=36.86 Aligned_cols=50 Identities=10% Similarity=0.104 Sum_probs=42.3
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 619 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 619 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
.+|..|..||......+. |..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 34 ~lt~~~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le--~~Glv~r~ 83 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLE--AKGLVRRI 83 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHH--HCCCEEec
Confidence 367889999988777677 999999999999999999999997 45777654
No 82
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=64.14 E-value=8.4 Score=35.37 Aligned_cols=51 Identities=16% Similarity=0.236 Sum_probs=42.2
Q ss_pred EcHHHHHHHHhhc-CCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFN-SSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN-~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|+.||.... ..+..+..+|++.+|++...+.+.+..|. +-+++.+.+
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le--~~GlV~R~~ 80 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLE--EKGLITRHT 80 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHH--hCCCeEeec
Confidence 6788998887765 35568889999999999999999999997 567777654
No 83
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=63.84 E-value=6.3 Score=37.28 Aligned_cols=66 Identities=8% Similarity=0.120 Sum_probs=42.7
Q ss_pred cCcceEEEEeEecCeeEEEEEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 600 YSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 600 ~~l~~~~i~~~~~~~~~~l~vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
|+.+++.+...-. -...++..+..||........+|+.||++.+|++...+.+.|..|. +.+++..
T Consensus 8 ~~~~~~~~~~~~~---m~~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~--~~G~I~~ 73 (171)
T 2e1c_A 8 HHHSSGLVPRGSH---MRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLR--ESGVIKK 73 (171)
T ss_dssp -------------------CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSSCC
T ss_pred ccccccccccccc---cccCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEe
Confidence 4556666654321 2235678888899888877889999999999999999999999996 4566643
No 84
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=63.69 E-value=4.9 Score=34.72 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=38.4
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 621 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 621 s~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
+..+..||..+ ..+.+|..||++.+|++...+.++|..|. +.+++...
T Consensus 20 ~~~r~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~--~~gli~~~ 67 (114)
T 2oqg_A 20 DETRWEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQ--ACGLVESV 67 (114)
T ss_dssp CHHHHHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred ChHHHHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeeEE
Confidence 45566777666 34579999999999999999999999996 55777653
No 85
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=63.60 E-value=4.8 Score=36.59 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=41.6
Q ss_pred EEEEcHHHHHHHHhhc---C--CCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 617 ELIVTTYQASALLLFN---S--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 617 ~l~vs~~Q~~ILllFN---~--~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
++-+|.-++.+|+.+- + ....|.++|++.+|++..++.+.|..|.. -++|..
T Consensus 27 ~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~--KGlI~i 83 (135)
T 2v79_A 27 QLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ--KGFLFI 83 (135)
T ss_dssp HHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH--HTSCEE
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH--CCCEEE
Confidence 4567888888887644 3 34689999999999999999999999984 466654
No 86
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=63.53 E-value=7.5 Score=32.01 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=33.1
Q ss_pred HHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 626 SALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 626 ~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
.||.+..... .|+.||++.+|++...+.++|..|. +-+++.+.
T Consensus 21 ~IL~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le--~eG~I~~~ 63 (82)
T 1oyi_A 21 EAIKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQ--RSAMVYSS 63 (82)
T ss_dssp HHHHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEEC
T ss_pred HHHHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEeC
Confidence 3444333444 9999999999999999999999996 45677654
No 87
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=63.48 E-value=6.3 Score=33.82 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=37.8
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 621 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 621 s~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
+..+..||..+. .+.+|+.||++.+|++...+.++|..|. +.+++...
T Consensus 25 ~~~r~~IL~~L~-~~~~~~~ela~~l~is~stvs~~L~~L~--~~Glv~~~ 72 (106)
T 1r1u_A 25 DYNRIRIMELLS-VSEASVGHISHQLNLSQSNVSHQLKLLK--SVHLVKAK 72 (106)
T ss_dssp SHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 355666666555 4568999999999999999999999996 56777653
No 88
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=63.23 E-value=9 Score=31.38 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=31.2
Q ss_pred HHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhh
Q 003927 627 ALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSC 662 (786)
Q Consensus 627 ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~ 662 (786)
|--+.|+...+|+.+|++.||++++++..+|..|..
T Consensus 13 VW~~L~~~~~~s~~el~k~t~l~d~el~lAIGWLaR 48 (82)
T 2l02_A 13 VWHALNEADGISIPELARKVNLSVESTALAVGWLAR 48 (82)
T ss_dssp HHHHHHHCCSBCHHHHHHHHTCCHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCCHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 344566677999999999999999999999999985
No 89
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=62.99 E-value=5.2 Score=38.31 Aligned_cols=51 Identities=20% Similarity=0.307 Sum_probs=43.0
Q ss_pred EcHHHHHHHHhhcC--CCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~--~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|..||..... .+.+|..+|++.+|++...+.+.|..|. +.+++.+.+
T Consensus 39 lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~~ 91 (189)
T 3nqo_A 39 LTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLE--KNGYVDVIP 91 (189)
T ss_dssp SCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEecc
Confidence 78889999876654 5689999999999999999999999997 557777643
No 90
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=62.97 E-value=4.2 Score=37.07 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=42.6
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 619 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 619 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
.+|..|..||... ..+++|..+|++.+|++...+.+.+..|. +.+++.+
T Consensus 35 ~lt~~q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le--~~Glv~r 83 (151)
T 3kp7_A 35 GISAEQSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLL--NAELVKL 83 (151)
T ss_dssp TCCHHHHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHH--HTTSEEC
T ss_pred CCCHHHHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEe
Confidence 3578899999888 77899999999999999999999999997 4577765
No 91
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=62.29 E-value=4.5 Score=45.85 Aligned_cols=128 Identities=16% Similarity=0.175 Sum_probs=82.1
Q ss_pred CCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccCCCCCcceEeecCCCchhhhhHHHhH
Q 003927 634 SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPVDEKKKVIEDV 713 (786)
Q Consensus 634 ~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~f~~N~~F~~~~~ki~i~~~~~~e~~~~~~~v 713 (786)
.+.+|+.+|...|+++...++.+|..|+ ..+++.-.+.+. ....|.+|.+ .--.+++.|. ... .
T Consensus 31 ~G~ltL~~I~~~t~L~~~~Vk~~L~vLI--Qh~lV~~~~~~~---~~~~Y~~~~~--~il~~lR~pk--------~l~-~ 94 (534)
T 2xub_A 31 TGSQPLRVIAHDTGTSLDQVKKALCVLV--QHNLVSYQVHKR---GVVEYEAQCS--RVLRMLRYPR--------YIY-T 94 (534)
T ss_dssp HCSEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEEEETT---TEEEEEECHH--HHHGGGGHHH--------HHH-H
T ss_pred cCCcCHHHHHHHhCCCHHHHHHHHHHHH--hcCCeeEEeCCC---CcEEEEEChh--hHHHHHhhHH--------HHH-H
Confidence 5789999999999999999999999997 456664332111 1234555432 1111222221 000 1
Q ss_pred HHHhhhhhcceeeeccccCCCCChhHHHHHHHHHhCCC----CCCChHHHHHHHHhhhhhccccccCC
Q 003927 714 DKDRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRM----FKPDFKAIKKRIEDLITRDYLERDKS 777 (786)
Q Consensus 714 ~~dR~~~i~A~IVRiMK~rK~l~~~~L~~ev~~~l~~~----F~p~~~~iK~~Ie~LIekeyl~R~~~ 777 (786)
.+.+--..-|.|+-..=..+.++.++|+..+...+... =.++...+...+..|++.+||.|.+.
T Consensus 95 i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~ 162 (534)
T 2xub_A 95 TKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS 162 (534)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEEeCCC
Confidence 11111222355666666778899999999888765321 13578899999999999999999874
No 92
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=62.12 E-value=5.3 Score=33.40 Aligned_cols=48 Identities=10% Similarity=0.285 Sum_probs=39.1
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 621 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 621 s~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
+..+..||......+.+|+.+|++.+|++...+.++|..|. +.+++.+
T Consensus 15 ~~~~~~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~--~~gli~~ 62 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLE--RNGLVKT 62 (100)
T ss_dssp SHHHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred ChHHHHHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 56677788766555689999999999999999999999996 4566654
No 93
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=62.01 E-value=4.1 Score=37.51 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=43.1
Q ss_pred EcHHHHHHHHhh-cCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLF-NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllF-N~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|..||... ...+.+|..+|++.+|++...+.+.+..|. +.+++.+.
T Consensus 45 l~~~~~~iL~~L~~~~~~~~~~ela~~l~i~~~tvs~~l~~Le--~~Gli~r~ 95 (160)
T 3boq_A 45 LSLAKFDAMAQLARNPDGLSMGKLSGALKVTNGNVSGLVNRLI--KDGMVVKA 95 (160)
T ss_dssp CCHHHHHHHHHHHHCTTCEEHHHHHHHCSSCCSCHHHHHHHHH--HHTSEEEC
T ss_pred CCHHHHHHHHHHHHcCCCCCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEee
Confidence 678899999887 567789999999999999999999999997 45777664
No 94
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=61.97 E-value=5.6 Score=36.15 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=24.7
Q ss_pred HhCCCCCCChHHHHHHHHhhhhhccccc
Q 003927 747 QLGRMFKPDFKAIKKRIEDLITRDYLER 774 (786)
Q Consensus 747 ~l~~~F~p~~~~iK~~Ie~LIekeyl~R 774 (786)
+++.+...++..|-+.|..|++||||+|
T Consensus 56 ~LA~~~~~s~~~v~~~L~~L~~KGlI~i 83 (135)
T 2v79_A 56 QLQEGMSISVEECTNRLRMFIQKGFLFI 83 (135)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 3445788899999999999999999999
No 95
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=61.88 E-value=17 Score=32.31 Aligned_cols=48 Identities=17% Similarity=0.188 Sum_probs=35.6
Q ss_pred CCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003927 634 SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 688 (786)
Q Consensus 634 ~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~f~~N~~ 688 (786)
...+|..+|++.+|+|...+.+.|..|. +.+++...+ | ++..|.+..+
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~~L~--~~Glv~~~~-g----~~ggy~L~~~ 71 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVSPLR--NAGLVKSIR-G----AYGGYVLGSE 71 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHHHHH--HTTSEEEC---------CCEEESSC
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEecC-C----CCCceEeCCC
Confidence 4579999999999999999999999996 567776432 1 2345766553
No 96
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=61.42 E-value=7.9 Score=32.85 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=43.2
Q ss_pred EEEcHHHHHHHHhhcCCCCccHHHHHH-HhCCCHHHHHHHHhHhhhccccccc
Q 003927 618 LIVTTYQASALLLFNSSDRLSYSEIMT-QLNLSDDDVVRLLHSLSCAKYKILN 669 (786)
Q Consensus 618 l~vs~~Q~~ILllFN~~~~lt~~ei~~-~t~l~~~~l~~~L~~L~~~k~kiL~ 669 (786)
..++..|+.||......+..|..+|++ ..+++...+-+++.+|. +-+++.
T Consensus 12 ~~L~~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~--r~GlVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLI--KKGLVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHH--TTTSEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHH--HCCCee
Confidence 346788999998887777999999999 99999999999999997 557775
No 97
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=61.04 E-value=11 Score=34.32 Aligned_cols=48 Identities=13% Similarity=0.236 Sum_probs=40.3
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 621 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 621 s~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
+..+..||....++..+|..||++.+|++...+.+.|..|. +.+++..
T Consensus 2 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 49 (150)
T 2pn6_A 2 DEIDLRILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLE--KDGVIKG 49 (150)
T ss_dssp CHHHHHHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HTTSSCC
T ss_pred ChHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEE
Confidence 34567788888877889999999999999999999999996 4567754
No 98
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=60.64 E-value=2.8 Score=35.10 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=35.9
Q ss_pred eeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccC
Q 003927 725 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 776 (786)
Q Consensus 725 IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~ 776 (786)
|...++.++.++.++|.. .|..+...|.+-|+.|.++|+|+|..
T Consensus 7 Il~~L~~~g~vsv~eLA~--------~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSA--------RLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHSCSEEHHHHHH--------HTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHcCCCcHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 455566677777766665 59999999999999999999999974
No 99
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=60.59 E-value=5.2 Score=39.07 Aligned_cols=51 Identities=14% Similarity=0.041 Sum_probs=43.6
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|..||......+.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 46 Lt~~q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le--~~GlV~r~~ 96 (207)
T 2fxa_A 46 LNINEHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLE--ERGYLRFSK 96 (207)
T ss_dssp CCHHHHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHH--HHTSEEEEC
T ss_pred CCHHHHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEEEec
Confidence 578899999877766789999999999999999999999997 557776653
No 100
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=60.33 E-value=5.5 Score=34.08 Aligned_cols=60 Identities=13% Similarity=0.263 Sum_probs=40.3
Q ss_pred cceeeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCceeecC
Q 003927 722 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 786 (786)
Q Consensus 722 ~A~IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y~Y~a 786 (786)
|..|.+++-....++..+|... +...-.++...|...|+.|.++|||+|..+ ...|.|-|
T Consensus 37 e~~VL~~L~~~~~~t~~eL~~~----l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~-gR~~~Y~p 96 (99)
T 2k4b_A 37 ELIVMRVIWSLGEARVDEIYAQ----IPQELEWSLATVKTLLGRLVKKEMLSTEKE-GRKFVYRP 96 (99)
T ss_dssp CSHHHHHHHHHSCEEHHHHHHT----CCGGGCCCHHHHHHHHHHHHHTTSCEEEEE-TTEEEEEC
T ss_pred HHHHHHHHHhCCCCCHHHHHHH----HhcccCCCHhhHHHHHHHHHHCCCEEEEeC-CCEEEEEE
Confidence 3444455544455666666553 332223568889999999999999999875 45788865
No 101
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=58.67 E-value=12 Score=32.86 Aligned_cols=49 Identities=12% Similarity=0.123 Sum_probs=38.7
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 621 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 621 s~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+..+..||..+.+ +..++.||++.+|++...+.++|..|. +.+++....
T Consensus 20 ~~~r~~IL~~L~~-~~~~~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~~ 68 (118)
T 2jsc_A 20 DPTRCRILVALLD-GVCYPGQLAAHLGLTRSNVSNHLSCLR--GCGLVVATY 68 (118)
T ss_dssp SHHHHHHHHHHHT-TCCSTTTHHHHHSSCHHHHHHHHHHHT--TTTSEEEEE
T ss_pred CHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEEE
Confidence 4566677766654 468999999999999999999999996 567776543
No 102
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=58.63 E-value=8.2 Score=39.16 Aligned_cols=56 Identities=14% Similarity=0.289 Sum_probs=44.3
Q ss_pred HHHHHhhcC-CCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003927 625 ASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 688 (786)
Q Consensus 625 ~~ILllFN~-~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~f~~N~~ 688 (786)
..||.+|.+ ...+|+.||++.+|++...+.+.|..|. ..+.+.+.+. +..|.+-..
T Consensus 9 l~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~tL~--~~G~v~~~~~------~~~Y~lG~~ 65 (260)
T 3r4k_A 9 LTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSELQ--EAGFVEQVEG------ARSYRLGPQ 65 (260)
T ss_dssp HHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHHHH--HTTSEEECSS------SSEEEECTT
T ss_pred HHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEcCC------CCcEEcCHH
Confidence 357778886 4689999999999999999999999997 5678877542 356776554
No 103
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=58.50 E-value=5.1 Score=34.65 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=35.9
Q ss_pred HHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 624 QASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 624 Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
+..||..+.+ +.+|+.||++.+|++...+.++|..|. +.+++...
T Consensus 27 r~~IL~~L~~-~~~s~~eLa~~lgis~stvs~~L~~L~--~~GlV~~~ 71 (108)
T 2kko_A 27 RLQILDLLAQ-GERAVEAIATATGMNLTTASANLQALK--SGGLVEAR 71 (108)
T ss_dssp THHHHHHHTT-CCEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred HHHHHHHHHc-CCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 4455555554 678999999999999999999999996 56777654
No 104
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=58.39 E-value=16 Score=28.98 Aligned_cols=56 Identities=7% Similarity=0.167 Sum_probs=41.8
Q ss_pred HHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccCCC
Q 003927 625 ASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFT 690 (786)
Q Consensus 625 ~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~f~~N~~F~ 690 (786)
-.|.-+|.+..-+|+.+|.+.|+=|+..|+.+|..++ ++.+.++ -...|.+-++|.
T Consensus 11 d~lF~~Fek~~yw~lK~L~~~t~QP~~yLKeiL~~Ia-----~~~k~g~-----~~~~weLKpEyr 66 (69)
T 1bby_A 11 DMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIG-----VQNVKGI-----HKNTWELKPEYR 66 (69)
T ss_dssp HHHHHHHHHCSCBCHHHHHHHCCSCHHHHHHHHHHHC-----CCBCCTT-----CCCBBCCCCSSC
T ss_pred HHHHHHHhhcCCCcHHHHHHHHcCcHHHHHHHHHHHH-----HHHcCCC-----CCCeeeCcHHHh
Confidence 3566789999999999999999999999999998874 4544431 234565555554
No 105
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=58.19 E-value=8.1 Score=32.89 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=40.8
Q ss_pred EcHHHHHHHHhhcCC------CCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 620 VTTYQASALLLFNSS------DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 620 vs~~Q~~ILllFN~~------~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
+++.|..+|..+.+. ..+++.+|++.++++...|.++|..|. +.+++..
T Consensus 14 l~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe--~~GLV~r 68 (96)
T 2obp_A 14 IDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQ--AAGLADV 68 (96)
T ss_dssp CCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHH--HCCCEEe
Confidence 678899998755543 679999999999999999999999996 5567654
No 106
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=57.38 E-value=10 Score=34.73 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=40.9
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
++..+..||....+...+|+.||++.+|++...+.+.|..|. +.+++.+
T Consensus 5 ld~~~~~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 53 (150)
T 2w25_A 5 LDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLE--SRGVVQG 53 (150)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 466777888777777789999999999999999999999996 4566653
No 107
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=57.26 E-value=4.6 Score=32.86 Aligned_cols=57 Identities=16% Similarity=0.283 Sum_probs=40.8
Q ss_pred eeeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCceeec
Q 003927 724 SIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYL 785 (786)
Q Consensus 724 ~IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y~Y~ 785 (786)
.|.+++-....++..+|...+-.. -..+...+...|+.|.++|||+|..++ ..+.|-
T Consensus 13 ~vL~~L~~~~~~t~~ei~~~l~~~----~~~s~~Tv~~~l~rL~~kGlv~r~~~g-r~~~y~ 69 (82)
T 1p6r_A 13 EVMKVIWKHSSINTNEVIKELSKT----STWSPKTIQTMLLRLIKKGALNHHKEG-RVFVYT 69 (82)
T ss_dssp HHHHHHHTSSSEEHHHHHHHHHHH----SCCCHHHHHHHHHHHHHTTSEEEEEET-TEEEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHhhc----CCccHHHHHHHHHHHHHCCCeEEEecC-CEEEEE
Confidence 344444445678888888766432 234778899999999999999998754 467774
No 108
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=56.94 E-value=11 Score=34.55 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=36.1
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 623 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 623 ~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
+.+.+.+.-+....+|.++|++.+|+|...+.+.|..|. +.+++..
T Consensus 17 l~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~L~--~~Glv~s 62 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLK--QAGFVYV 62 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEE
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEE
Confidence 344444544444579999999999999999999999996 6788754
No 109
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=56.81 E-value=12 Score=37.32 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=42.8
Q ss_pred HHHHhhcCCC-CccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003927 626 SALLLFNSSD-RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 688 (786)
Q Consensus 626 ~ILllFN~~~-~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~f~~N~~ 688 (786)
.||..|.+.+ .+|+.||++.+|++...+.+.|..|. +.+++.+.+. +..|.+...
T Consensus 10 ~iL~~l~~~~~~~s~~ela~~~gl~~stv~r~l~~L~--~~G~v~~~~~------~~~Y~lg~~ 65 (241)
T 2xrn_A 10 SIMRALGSHPHGLSLAAIAQLVGLPRSTVQRIINALE--EEFLVEALGP------AGGFRLGPA 65 (241)
T ss_dssp HHHHHHHTCTTCEEHHHHHHHTTSCHHHHHHHHHHHH--TTTSEEECGG------GCEEEECSH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeCC------CCeEEECHH
Confidence 5677787654 79999999999999999999999997 5678876532 346766544
No 110
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=55.88 E-value=8.2 Score=38.87 Aligned_cols=50 Identities=16% Similarity=0.295 Sum_probs=42.1
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|..||..+.+.+.+|..||++.+|++...+.+.|..|. +.+++.+.
T Consensus 150 L~~~~~~IL~~L~~~~~~s~~eLA~~lglsksTv~r~L~~Le--~~GlV~r~ 199 (244)
T 2wte_A 150 YSREEMKLLNVLYETKGTGITELAKMLDKSEKTLINKIAELK--KFGILTQK 199 (244)
T ss_dssp CCHHHHHHHHHHHHHTCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEe
Confidence 467788898877666789999999999999999999999996 55777653
No 111
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=55.65 E-value=9.7 Score=29.81 Aligned_cols=45 Identities=7% Similarity=0.161 Sum_probs=34.7
Q ss_pred HHHHHHHhhcCC-CCccHHHHHHHhCCCHHHHHHHHhHhhhccccccc
Q 003927 623 YQASALLLFNSS-DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 669 (786)
Q Consensus 623 ~Q~~ILllFN~~-~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~ 669 (786)
..-.||.++.+. ..+|..||++.+|++...+.+.|..|.. .+++.
T Consensus 11 ~~~~IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~--~G~I~ 56 (67)
T 2heo_A 11 LEQKILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKK--EDRVS 56 (67)
T ss_dssp HHHHHHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHH--TTSEE
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHH--CCcEe
Confidence 344566666543 4799999999999999999999999963 34443
No 112
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=54.29 E-value=15 Score=33.48 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=34.8
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 623 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 623 ~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
+.+.+.|.-+.. . |.++|++.+++|...|.+.|..|. |.+++...
T Consensus 12 l~~L~~La~~~~-~-s~~~IA~~~~i~~~~l~kIl~~L~--~aGlv~s~ 56 (145)
T 1xd7_A 12 IHILSLISMDEK-T-SSEIIADSVNTNPVVVRRMISLLK--KADILTSR 56 (145)
T ss_dssp HHHHHHHHTCSC-C-CHHHHHHHHTSCHHHHHHHHHHHH--HTTSEECC
T ss_pred HHHHHHHHhCCC-C-CHHHHHHHHCcCHHHHHHHHHHHH--HCCceEee
Confidence 344444554444 5 999999999999999999999996 67888643
No 113
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=53.28 E-value=11 Score=33.07 Aligned_cols=48 Identities=10% Similarity=0.158 Sum_probs=37.9
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 621 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 621 s~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++....||.+..+ +..|+.||++.+|++...+.++|..|. +.+++...
T Consensus 17 ~~~R~~Il~~L~~-~~~~~~eLa~~l~is~~tvs~hL~~L~--~~GlV~~~ 64 (118)
T 3f6o_A 17 DPTRRAVLGRLSR-GPATVSELAKPFDMALPSFMKHIHFLE--DSGWIRTH 64 (118)
T ss_dssp SHHHHHHHHHHHT-CCEEHHHHHTTCCSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHHh-CCCCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 3445566655554 678999999999999999999999996 56787654
No 114
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=53.12 E-value=13 Score=33.67 Aligned_cols=49 Identities=18% Similarity=0.322 Sum_probs=39.8
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
++..+-.||....+...+|+.||++.+|++...+.+.|..|. +.+++.+
T Consensus 3 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 51 (144)
T 2cfx_A 3 LDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLE--SFGIIKQ 51 (144)
T ss_dssp CCHHHHHHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEE
Confidence 345666778777777789999999999999999999999996 4566653
No 115
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=52.24 E-value=11 Score=34.03 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=39.0
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 621 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 621 s~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
+..+..||..+..++.+|+.||++.+|++...+.+.|..|. +.+++.+
T Consensus 3 d~~~~~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 50 (141)
T 1i1g_A 3 DERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALE--EKGIIEG 50 (141)
T ss_dssp CSHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HHTSSCC
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEec
Confidence 34566777777666789999999999999999999999996 4566654
No 116
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=51.49 E-value=5.9 Score=36.86 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=39.4
Q ss_pred EcHHHHHHHHhhcC--CCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~--~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|..||..... .+.+|..+|++.++++...+.+.|..|. +.+++.+.+
T Consensus 44 lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le--~~Glv~r~~ 96 (168)
T 3u2r_A 44 LSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLD--DRGLVLRTR 96 (168)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHH--HTTSEEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEeecC
Confidence 57788888877665 4589999999999999999999999997 557776643
No 117
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=51.04 E-value=8.7 Score=33.74 Aligned_cols=51 Identities=18% Similarity=0.290 Sum_probs=42.2
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhC----CCHHHHHHHHhHhhhccccccccC
Q 003927 619 IVTTYQASALLLFNSSDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 619 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~----l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
.+|..|..||...-+.+.+|..||++.++ ++...+.+.|..|. +-+++.+.
T Consensus 7 ~Lt~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe--~kGlv~R~ 61 (126)
T 1sd4_A 7 EISMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLY--KKEIIKRY 61 (126)
T ss_dssp CCCHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCCHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHH--HCCceEEE
Confidence 46889999998776677899999999997 57899999999997 45777654
No 118
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=50.98 E-value=16 Score=32.83 Aligned_cols=50 Identities=14% Similarity=0.211 Sum_probs=42.0
Q ss_pred EcHHHHHHHHhhcC-CCCccHHHHHHHhC----CCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNS-SDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~-~~~lt~~ei~~~t~----l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
+|..|..||...-+ .+.+|..||++.++ ++...+.+.|..|. +-+++.+.
T Consensus 7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe--~kGlv~r~ 61 (138)
T 2g9w_A 7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLA--KKNLVLQI 61 (138)
T ss_dssp CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHH--HCCCEEEE
Confidence 57889999987766 57899999999998 78999999999997 45777654
No 119
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=50.92 E-value=11 Score=32.75 Aligned_cols=47 Identities=13% Similarity=0.205 Sum_probs=37.9
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 621 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 621 s~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
+..|..||..+.+ +..|+.+|++.+|++...+.++|..|. +.+++..
T Consensus 31 ~~~~~~il~~L~~-~~~s~~ela~~l~is~stvsr~l~~Le--~~Glv~~ 77 (119)
T 2lkp_A 31 TPSRLMILTQLRN-GPLPVTDLAEAIGMEQSAVSHQLRVLR--NLGLVVG 77 (119)
T ss_dssp CHHHHHHHHHHHH-CCCCHHHHHHHHSSCHHHHHHHHHHHH--HHCSEEE
T ss_pred CHHHHHHHHHHHH-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEE
Confidence 3567777777665 678999999999999999999999996 3566643
No 120
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=50.55 E-value=18 Score=32.97 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=36.5
Q ss_pred EcHHHHHHHHhhcCC-----CCccHHHHHHHhCCCHHHHHHHHhHhhhcccccc
Q 003927 620 VTTYQASALLLFNSS-----DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKIL 668 (786)
Q Consensus 620 vs~~Q~~ILllFN~~-----~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL 668 (786)
+|..|..||...... +.+|..+|++.++++...+.+.+..|. +-+++
T Consensus 31 Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le--~~glV 82 (148)
T 4fx0_A 31 LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMR--RDGLV 82 (148)
T ss_dssp CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHH--HTTSB
T ss_pred CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCE
Confidence 578899888766543 359999999999999999999999996 44665
No 121
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=50.21 E-value=18 Score=27.39 Aligned_cols=37 Identities=16% Similarity=0.239 Sum_probs=30.3
Q ss_pred HHHHHHhhcCCCCccHHHHHHHh-----CCCHHHHHHHHhHh
Q 003927 624 QASALLLFNSSDRLSYSEIMTQL-----NLSDDDVVRLLHSL 660 (786)
Q Consensus 624 Q~~ILllFN~~~~lt~~ei~~~t-----~l~~~~l~~~L~~L 660 (786)
+..|+.+.+..+.+|.+||++.+ +++...+.+.|..+
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l 48 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKEL 48 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc
Confidence 44455556666789999999999 99999999999855
No 122
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=50.18 E-value=6.7 Score=34.37 Aligned_cols=51 Identities=12% Similarity=0.196 Sum_probs=42.1
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhC----CCHHHHHHHHhHhhhccccccccC
Q 003927 619 IVTTYQASALLLFNSSDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 619 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~----l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
.+|..|..||....+.+.+|..+|++.++ ++...+.+.|..|. +-+++.+.
T Consensus 7 ~lt~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~--~~Glv~r~ 61 (123)
T 1okr_A 7 EISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLY--KKGFIDRK 61 (123)
T ss_dssp CCCHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred cCCHHHHHHHHHHHhCCCcCHHHHHHHHhccCCCcHhhHHHHHHHHH--HCCCeEEE
Confidence 36788999988776667899999999999 77999999999997 45677653
No 123
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=49.92 E-value=14 Score=33.74 Aligned_cols=49 Identities=14% Similarity=0.281 Sum_probs=40.7
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
++..+..||....++..+|+.||++.+|++...+.+.|..|. +.+++..
T Consensus 6 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 54 (152)
T 2cg4_A 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPETIHVRVEKMK--QAGIITG 54 (152)
T ss_dssp CCHHHHHHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHH--HHTSEEE
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HcCCcce
Confidence 456677788777777889999999999999999999999996 4566653
No 124
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=49.77 E-value=14 Score=34.71 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=41.6
Q ss_pred EEEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccc
Q 003927 618 LIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 669 (786)
Q Consensus 618 l~vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~ 669 (786)
..++..+..||........+|+.||++.+|++...+.+.|..|. +.+++.
T Consensus 13 ~~ld~~d~~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~--~~G~I~ 62 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQ--ERGVIE 62 (171)
T ss_dssp -CCCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEE
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEE
Confidence 44677788888888777789999999999999999999999996 456664
No 125
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=49.77 E-value=14 Score=33.63 Aligned_cols=48 Identities=21% Similarity=0.410 Sum_probs=40.4
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccc
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 669 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~ 669 (786)
++..+..||..+.+...+|..||++.+|++...+.+.|..|. +.+++.
T Consensus 7 ld~~d~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~ 54 (151)
T 2dbb_A 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLK--KLGIIR 54 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHH--HHTSEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEE
Confidence 456677888888777889999999999999999999999996 446664
No 126
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=49.62 E-value=25 Score=27.27 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=32.7
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhh
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 661 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~ 661 (786)
.+.-|..|+.++ ...+|..||++.+|++...+...+..+.
T Consensus 12 L~~~e~~il~~~--~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 12 LTKREREVFELL--VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp CCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 567788888777 3567999999999999999988887754
No 127
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=49.48 E-value=12 Score=38.34 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=36.0
Q ss_pred HHHHhhcCC-CCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 626 SALLLFNSS-DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 626 ~ILllFN~~-~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
.||.+|.+. ..+|+.||++.+|+|...+.+.|..|. ..+.|.+.+
T Consensus 34 ~IL~~l~~~~~~ltl~eia~~lgl~ksTv~RlL~tL~--~~G~v~~~~ 79 (275)
T 3mq0_A 34 RILDLVAGSPRDLTAAELTRFLDLPKSSAHGLLAVMT--ELDLLARSA 79 (275)
T ss_dssp HHHHHHHHCSSCEEHHHHHHHHTCC--CHHHHHHHHH--HTTSEEECT
T ss_pred HHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEECC
Confidence 477788765 479999999999999999999999997 467887653
No 128
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=49.29 E-value=16 Score=33.46 Aligned_cols=49 Identities=10% Similarity=0.251 Sum_probs=40.4
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
++..+..||....++...|+.+|++.+|++...+.+.|..|. +.+++..
T Consensus 5 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 53 (151)
T 2cyy_A 5 LDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLR--ESGVIKK 53 (151)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHH--HHTSSCC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEE
Confidence 456677788777777789999999999999999999999996 4466653
No 129
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=49.17 E-value=20 Score=31.60 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=37.0
Q ss_pred HHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 622 TYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 622 ~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
..+..||....+ +..++.+|++.+|++...+.++|..|. +.+++...
T Consensus 46 ~~rl~IL~~L~~-~~~s~~ela~~lgis~stvs~~L~~Le--~~Glv~~~ 92 (122)
T 1r1t_A 46 PNRLRLLSLLAR-SELCVGDLAQAIGVSESAVSHQLRSLR--NLRLVSYR 92 (122)
T ss_dssp HHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 455666665554 578999999999999999999999996 45676543
No 130
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=47.86 E-value=16 Score=36.88 Aligned_cols=51 Identities=20% Similarity=0.267 Sum_probs=42.7
Q ss_pred EcHHHHHHHHhhcCCC--CccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 620 VTTYQASALLLFNSSD--RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~--~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
+|..|..||......+ .+|..||++.++++...+.+.+..|. +-+++.+.+
T Consensus 156 Lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe--~~GlV~R~~ 208 (250)
T 1p4x_A 156 LSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNLK--KQGYLIKER 208 (250)
T ss_dssp SCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHHH--HHTSSEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHHH--HCCCEEeeC
Confidence 5788999987766544 59999999999999999999999997 557887654
No 131
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=47.28 E-value=14 Score=40.73 Aligned_cols=52 Identities=19% Similarity=0.161 Sum_probs=45.0
Q ss_pred EEcHHHHHHHHhhcCC--CCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 619 IVTTYQASALLLFNSS--DRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 619 ~vs~~Q~~ILllFN~~--~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
.+|..|..||....++ +.+|..||++.++++...+.+.|..|. +.+++.+.+
T Consensus 401 ~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~le--~~g~v~r~~ 454 (487)
T 1hsj_A 401 NLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQKLK--DLKLLSKKR 454 (487)
T ss_dssp CCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHHHH--TTTTSCCEE
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHHHH--HCCCEeecC
Confidence 3688999999888777 889999999999999999999999997 567777653
No 132
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=47.18 E-value=9.1 Score=38.19 Aligned_cols=152 Identities=14% Similarity=0.197 Sum_probs=83.3
Q ss_pred HHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc-CCCCC-CCCCCCeEEEccCCCC--------
Q 003927 622 TYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK-EPNTK-TISPTDHFEFNSKFTD-------- 691 (786)
Q Consensus 622 ~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~-~~~~~-~i~~~~~f~~N~~F~~-------- 691 (786)
.....||.+..+ +.+|+.+|++.+|++...+.++|..|. +.+++.. ...+. ...|...|.++.....
T Consensus 12 ~~R~~IL~~L~~-g~~s~~ELa~~lglS~stVs~hL~~Le--~aGLV~~~~~~gr~~GRp~~~Y~Lt~~~~~~~~l~~~~ 88 (232)
T 2qlz_A 12 KVRRDLLSHLTC-MECYFSLLSSKVSVSSTAVAKHLKIME--REGVLQSYEKEERFIGPTKKYYKISIAKSYVFTLTPEM 88 (232)
T ss_dssp HHHHHHHHHHTT-TTTCSSSSCTTCCCCHHHHHHHHHHHH--HTTSEEEEEECC-----CEEEEEECCCEEEEEEEETTE
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEeeecCCCCCCccEEEEEccchhhHHHHHHHH
Confidence 445556655554 679999999999999999999999997 5677765 22222 1123345666553210
Q ss_pred -----------CcceEeecCCCchhh--------------hhHHHhHHHHhhhhhcceeeeccccCCC-----CChhHHH
Q 003927 692 -----------KMRRIKIPLPPVDEK--------------KKVIEDVDKDRRYAIDASIVRIMKSRKV-----LGHQQLV 741 (786)
Q Consensus 692 -----------~~~ki~i~~~~~~e~--------------~~~~~~v~~dR~~~i~A~IVRiMK~rK~-----l~~~~L~ 741 (786)
....+.|+....++. .+...+.. .-...+++.+-.+|+..|. +.-.+.-
T Consensus 89 ~w~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~v~~~~~~~~~~~~~~~le~ig~~~~~ 167 (232)
T 2qlz_A 89 FWYKGLDLGDAELRDFEISLSGLDTEPSTLKEMITDFIKANKELEKVL-EAFKTIESYRSSLMRKIKEAYLKEIGDMTQL 167 (232)
T ss_dssp EEEEEEECCSCCCCCEEEECTTSCSCCCSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTCCTTHH
T ss_pred HHHHHhhccccccchhhhhHhHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCccHH
Confidence 001121221100010 01111111 1123556666666655432 1111222
Q ss_pred HHHH----------HHhCCCCCCChHHHHHHHHhhhhhccccccCC
Q 003927 742 LECV----------EQLGRMFKPDFKAIKKRIEDLITRDYLERDKS 777 (786)
Q Consensus 742 ~ev~----------~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~ 777 (786)
.++. ..+..+...+++.+...+..|.+.|.++|..+
T Consensus 168 ~~l~~~l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~~~~~ 213 (232)
T 2qlz_A 168 AILHYLLLNGRATVEELSDRLNLKEREVREKISEMARFVPVKIIND 213 (232)
T ss_dssp HHHHHHHHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEEEETT
T ss_pred HHHHHHHhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeEEecC
Confidence 2222 23333566788899999999999999987654
No 133
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=46.86 E-value=18 Score=33.42 Aligned_cols=49 Identities=20% Similarity=0.318 Sum_probs=40.4
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
++..+..||....+...+|+.||++.+|++...+.+.|..|. +.+++.+
T Consensus 8 ld~~~~~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~--~~G~i~~ 56 (162)
T 2p5v_A 8 LDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLE--DAGIVRQ 56 (162)
T ss_dssp CCHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEE
T ss_pred CCHHHHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEee
Confidence 456677788777777789999999999999999999999996 4566653
No 134
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=45.77 E-value=23 Score=35.39 Aligned_cols=55 Identities=16% Similarity=0.189 Sum_probs=41.5
Q ss_pred HHHHHhhcCCC-CccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003927 625 ASALLLFNSSD-RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 688 (786)
Q Consensus 625 ~~ILllFN~~~-~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~f~~N~~ 688 (786)
..||.+|.+.+ .+|+.||++.+|++...+.+.|..|. +.+++.+. .+..|.+...
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~~stv~r~l~~L~--~~G~v~~~-------~~~~Y~lg~~ 66 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLE--EKGFVLRK-------KDKRYVPGYK 66 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHH--HTTSEEEC-------TTSCEEECTH
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCcEEEC-------CCCcEEECHH
Confidence 45777776544 79999999999999999999999997 45777653 2345666443
No 135
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=45.72 E-value=15 Score=30.65 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=34.8
Q ss_pred HHHHHHhhcCCC-CccHHHHHHHhCCCHHH-HHHHHhHhhhccccccc
Q 003927 624 QASALLLFNSSD-RLSYSEIMTQLNLSDDD-VVRLLHSLSCAKYKILN 669 (786)
Q Consensus 624 Q~~ILllFN~~~-~lt~~ei~~~t~l~~~~-l~~~L~~L~~~k~kiL~ 669 (786)
+..+|..+...+ .+|..||++.+|++... +.+.|..|. +.+++.
T Consensus 17 ~l~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le--~~Glv~ 62 (95)
T 2pg4_A 17 ILPTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLI--RAGLVK 62 (95)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHH--HTTSEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHH--HCCCee
Confidence 445666665555 79999999999999999 999999996 445554
No 136
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=45.52 E-value=29 Score=28.84 Aligned_cols=42 Identities=21% Similarity=0.203 Sum_probs=34.9
Q ss_pred EEEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhh
Q 003927 618 LIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 661 (786)
Q Consensus 618 l~vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~ 661 (786)
...|.-|..||.++- ..+|..||++.+|++...++.++..+.
T Consensus 28 ~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~iS~~TV~~~~~~i~ 69 (90)
T 3ulq_B 28 DVLTPRECLILQEVE--KGFTNQEIADALHLSKRSIEYSLTSIF 69 (90)
T ss_dssp -CCCHHHHHHHHHHH--TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 456778888887776 568999999999999999999888775
No 137
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=45.46 E-value=30 Score=28.01 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=32.6
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhh
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 661 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~ 661 (786)
++.-|..|+.++ ...+|.+||++.+|++...++..+....
T Consensus 22 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 61 (82)
T 1je8_A 22 LTPRERDILKLI--AQGLPNKMIARRLDITESTVKVHVKHML 61 (82)
T ss_dssp SCHHHHHHHHHH--TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 567777777776 3568999999999999999988887654
No 138
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=45.28 E-value=14 Score=31.16 Aligned_cols=47 Identities=15% Similarity=0.233 Sum_probs=35.1
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 621 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 621 s~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
++....||..+-..++.|+.||++.+|++...+-++|..|. .. ++..
T Consensus 26 ~~~Rl~IL~~l~~~~~~~~~ela~~l~is~stvs~hL~~L~--~~-lv~~ 72 (99)
T 2zkz_A 26 HPMRLKIVNELYKHKALNVTQIIQILKLPQSTVSQHLCKMR--GK-VLKR 72 (99)
T ss_dssp SHHHHHHHHHHHHHSCEEHHHHHHHHTCCHHHHHHHHHHHB--TT-TBEE
T ss_pred CHHHHHHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HH-hhhh
Confidence 45556666333334579999999999999999999999995 44 5543
No 139
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=44.96 E-value=10 Score=33.85 Aligned_cols=27 Identities=4% Similarity=0.129 Sum_probs=23.5
Q ss_pred CCCCCChHHHHHHHHhhhhhccccccC
Q 003927 750 RMFKPDFKAIKKRIEDLITRDYLERDK 776 (786)
Q Consensus 750 ~~F~p~~~~iK~~Ie~LIekeyl~R~~ 776 (786)
.+...+...|.++|..|+++|||+|..
T Consensus 59 ~~l~~s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 59 ERMTVSAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp HTSSSCHHHHHHHHHHHHHTTSSEECC
T ss_pred HHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 356778999999999999999999964
No 140
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=44.52 E-value=14 Score=29.92 Aligned_cols=58 Identities=5% Similarity=0.114 Sum_probs=42.0
Q ss_pred eeeeccccC--CCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCceee
Q 003927 724 SIVRIMKSR--KVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRY 784 (786)
Q Consensus 724 ~IVRiMK~r--K~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y~Y 784 (786)
+|..++... +.++..+|...+.+.. ...+...|-+.++.|.+.|+|.|...+.+...|
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~---~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMG---EEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhC---CCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 455556554 6799999988775532 245788999999999999999997653334444
No 141
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=44.34 E-value=26 Score=28.31 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=32.2
Q ss_pred HHHHhhcCCCCccHHHHHHHhCC-CHHHHHHHHhHhhh
Q 003927 626 SALLLFNSSDRLSYSEIMTQLNL-SDDDVVRLLHSLSC 662 (786)
Q Consensus 626 ~ILllFN~~~~lt~~ei~~~t~l-~~~~l~~~L~~L~~ 662 (786)
.|--+.|+...+|+.+|+..||+ +++++..+|..|..
T Consensus 14 ~VW~~L~~~~~~s~~el~k~t~l~~d~el~lAiGWLaR 51 (77)
T 2l01_A 14 QIWEALNGTEGLTQKQIKKATKLKADKDFFLGLGWLLR 51 (77)
T ss_dssp HHHHHHTTSSCEEHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHCCCCHHHHHHHHHHHhh
Confidence 34456677789999999999999 99999999999975
No 142
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=44.11 E-value=19 Score=30.87 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=32.0
Q ss_pred hcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 631 FNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 631 FN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
+..++.+|..+|++.+|++...+.++|..|. ..+++...
T Consensus 28 ~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~--~~GlV~~~ 66 (110)
T 1q1h_A 28 LDKGTEMTDEEIANQLNIKVNDVRKKLNLLE--EQGFVSYR 66 (110)
T ss_dssp HHHCSCBCHHHHHHTTTSCHHHHHHHHHHHH--HHTSCEEE
T ss_pred HHcCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 3455579999999999999999999999997 45677543
No 143
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=43.91 E-value=21 Score=36.10 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=37.2
Q ss_pred HHHHhhcC-CCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 626 SALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 626 ~ILllFN~-~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
.||.+|.. ...+|+.||++.+|++...+.+.|..|. +.+++.+.+
T Consensus 27 ~iL~~l~~~~~~~~~~eia~~~gl~kstv~r~l~tL~--~~G~v~~~~ 72 (260)
T 2o0y_A 27 DLLELFDAAHPTRSLKELVEGTKLPKTTVVRLVATMC--ARSVLTSRA 72 (260)
T ss_dssp HHHTTCBTTBSSBCHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEECT
T ss_pred HHHHHHhhCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEECC
Confidence 46777864 4689999999999999999999999997 457776653
No 144
>3omy_A Protein TRAM; DNA binding protein, dimer, bacterial conjugation, ribbon-HE helix, transcriptional repressor, DNA; 1.30A {Escherichia coli} SCOP: a.55.1.0
Probab=43.45 E-value=12 Score=27.52 Aligned_cols=41 Identities=24% Similarity=0.470 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhccCcccccH
Q 003927 190 NGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMGQMDYYE 234 (786)
Q Consensus 190 ~~~l~~~il~lI~~~R~g~~id~~llk~vi~~l~~lg~~~~~~Y~ 234 (786)
++++.+.|-+++++.|.... .---..++..||.+|| +.+|+
T Consensus 9 s~~v~~~I~~iVe~r~qeGA-~dvs~Ssv~smLleLG---LrVYe 49 (52)
T 3omy_A 9 NNNVYEQITDLVTIRKQEGI-EEASLSNVSSMLLELG---LRVYM 49 (52)
T ss_dssp CHHHHHHHHHHHHHHHHTTC-TTCCHHHHHHHHHHHH---HHHHH
T ss_pred chHHHHHHHHHHHHHHHcCc-ccccHHHHHHHHHHhh---hhhhh
Confidence 45566667777888886655 2234678999999999 45664
No 145
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=42.73 E-value=15 Score=32.07 Aligned_cols=57 Identities=21% Similarity=0.360 Sum_probs=38.7
Q ss_pred eeeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCceeec
Q 003927 724 SIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYL 785 (786)
Q Consensus 724 ~IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y~Y~ 785 (786)
.|.+++-....++..+|...+-. ....+.+.+...|+.|.++|||+|..+++ .+.|.
T Consensus 14 ~vL~~L~~~~~~t~~el~~~l~~----~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r-~~~~~ 70 (126)
T 1sd4_A 14 DVMNIIWDKKSVSANEIVVEIQK----YKEVSDKTIRTLITRLYKKEIIKRYKSEN-IYFYS 70 (126)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHHT----TSCCCHHHHHHHHHHHHHTTSEEEEEETT-EEEEE
T ss_pred HHHHHHHhcCCCCHHHHHHHHhh----cCCCChhhHHHHHHHHHHCCceEEEeCCC-eEEEE
Confidence 33444444556666666665432 12357888999999999999999987644 66664
No 146
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=42.65 E-value=12 Score=31.28 Aligned_cols=54 Identities=7% Similarity=0.058 Sum_probs=37.4
Q ss_pred eeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCcee
Q 003927 726 VRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFR 783 (786)
Q Consensus 726 VRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y~ 783 (786)
...+.....++..+|..++ ...+..+.+.+-+.|..|.++|||+|..+.+..+.
T Consensus 14 L~~l~~~~~~~~~el~~~l----a~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~ 67 (99)
T 1tbx_A 14 LAYLYDNEGIATYDLYKKV----NAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRL 67 (99)
T ss_dssp HHHHTTCTTCBHHHHHHHH----HTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHcCCcCHHHHHHHH----HHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEE
Confidence 3334445667766665433 33567789999999999999999999765444433
No 147
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=40.32 E-value=38 Score=31.31 Aligned_cols=44 Identities=11% Similarity=0.286 Sum_probs=37.0
Q ss_pred HHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccc
Q 003927 624 QASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN 669 (786)
Q Consensus 624 Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~ 669 (786)
...||....++..+|+.+|++.+|++...+.+.|..|. +.+++.
T Consensus 5 d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~--~~g~i~ 48 (162)
T 3i4p_A 5 DRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKME--EDGVIR 48 (162)
T ss_dssp HHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHH--HTTSSC
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCee
Confidence 44577777888899999999999999999999999996 446665
No 148
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.62 E-value=29 Score=29.35 Aligned_cols=50 Identities=10% Similarity=0.174 Sum_probs=41.6
Q ss_pred EEcHHHHHHHHhhcC--CCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 619 IVTTYQASALLLFNS--SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 619 ~vs~~Q~~ILllFN~--~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
.++..|..|+-+..+ .+.++..+|...|+|+...+.++|..|.. -+++..
T Consensus 34 ~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK~LE~--k~lIK~ 85 (95)
T 2yu3_A 34 GSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKNLES--KKLIKA 85 (95)
T ss_dssp SCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHH--HTSEEE
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHHHHHh--CCCEEE
Confidence 468899999987765 56799999999999999999999999974 355543
No 149
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=39.54 E-value=30 Score=29.53 Aligned_cols=45 Identities=16% Similarity=0.242 Sum_probs=35.3
Q ss_pred HHHHHHhhcCCCCccHHHHHHHh-CCCHHHHHHHHhHhhhccccccccC
Q 003927 624 QASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 624 Q~~ILllFN~~~~lt~~ei~~~t-~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
...||.... .+..++.||++.+ |++...+.+.|..|. +.+++.+.
T Consensus 16 ~~~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le--~~GlI~r~ 61 (107)
T 2hzt_A 16 KXVILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELE--ADGVINRI 61 (107)
T ss_dssp HHHHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 344554444 4679999999999 999999999999996 56788654
No 150
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=39.28 E-value=5.6 Score=34.05 Aligned_cols=52 Identities=25% Similarity=0.201 Sum_probs=40.6
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhC----CCHHHHHHHHhHhhhccccccccCC
Q 003927 619 IVTTYQASALLLFNSSDRLSYSEIMTQLN----LSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 619 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~----l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
.+|..|..||...-+.+.+|..||++.++ ++...+.+.|..|. +-+++.+.+
T Consensus 32 ~LT~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe--~KGlV~R~~ 87 (99)
T 2k4b_A 32 NVSNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLV--KKEMLSTEK 87 (99)
T ss_dssp CCCCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHH--HTTSCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHH--HCCCEEEEe
Confidence 35667777887665567899999999997 45789999999997 457776654
No 151
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=39.27 E-value=33 Score=28.60 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=33.6
Q ss_pred EEcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhh
Q 003927 619 IVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 661 (786)
Q Consensus 619 ~vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~ 661 (786)
.++.-|..|+.++ ...+|..||++.+|++...++..+....
T Consensus 27 ~Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 67 (95)
T 3c57_A 27 GLTDQERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLL 67 (95)
T ss_dssp CCCHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 3677788888776 4568999999999999999988887664
No 152
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=38.90 E-value=48 Score=26.05 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=31.5
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhh
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 661 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~ 661 (786)
.|.-|-.|+.++ ...+|..||++.+|++...+...+....
T Consensus 17 L~~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~~~r~~ 56 (79)
T 1x3u_A 17 LSERERQVLSAV--VAGLPNKSIAYDLDISPRTVEVHRANVM 56 (79)
T ss_dssp HCHHHHHHHHHH--TTTCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 355666777766 4578999999999999999988776653
No 153
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=38.50 E-value=30 Score=34.93 Aligned_cols=55 Identities=15% Similarity=0.297 Sum_probs=42.7
Q ss_pred HHHHHhhcC-CCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccCC
Q 003927 625 ASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKF 689 (786)
Q Consensus 625 ~~ILllFN~-~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~f~~N~~F 689 (786)
..||.+|.+ ...+|+.||++.+|++...+.+.|..|. ..+++.+. +..|.+...+
T Consensus 24 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~tL~--~~G~v~~~--------~~~Y~Lg~~~ 79 (265)
T 2ia2_A 24 LAVIRCFDHRNQRRTLSDVARATDLTRATARRFLLTLV--ELGYVATD--------GSAFWLTPRV 79 (265)
T ss_dssp HHHHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHHHH--HHTSEEES--------SSEEEECGGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEec--------CCEEEEcHHH
Confidence 357777864 4689999999999999999999999997 45777653 2567775543
No 154
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=37.89 E-value=27 Score=31.34 Aligned_cols=58 Identities=9% Similarity=0.137 Sum_probs=38.3
Q ss_pred cceeeecccc-CCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCceee
Q 003927 722 DASIVRIMKS-RKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRY 784 (786)
Q Consensus 722 ~A~IVRiMK~-rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y~Y 784 (786)
|..|.+++-. ...++..+|...+-. .-..+...|...|+.|.++|||+|..+++ .+.|
T Consensus 11 e~~vL~~L~~~~~~~t~~el~~~l~~----~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r-~~~~ 69 (138)
T 2g9w_A 11 ERAVMDHLWSRTEPQTVRQVHEALSA----RRDLAYTTVMAVLQRLAKKNLVLQIRDDR-AHRY 69 (138)
T ss_dssp HHHHHHHHHTCSSCEEHHHHHHHHTT----TCCCCHHHHHHHHHHHHHTTSEEEEC----CCEE
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHhc----cCCCCHHHHHHHHHHHHHCCCEEEEecCC-eEEE
Confidence 3444455544 466777777765422 22357889999999999999999987544 6666
No 155
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=37.51 E-value=21 Score=32.83 Aligned_cols=48 Identities=10% Similarity=0.190 Sum_probs=38.9
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 621 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 621 s~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
+.....||.+.. .+..|+.||++.+|++...+.++|..|. +.+++...
T Consensus 57 ~p~R~~IL~~L~-~~~~t~~eLa~~lgls~stvs~hL~~L~--~aGlV~~~ 104 (151)
T 3f6v_A 57 EPTRRRLVQLLT-SGEQTVNNLAAHFPASRSAISQHLRVLT--EAGLVTPR 104 (151)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHTTSSSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 456677776666 4679999999999999999999999996 56777653
No 156
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=37.32 E-value=35 Score=34.23 Aligned_cols=54 Identities=22% Similarity=0.356 Sum_probs=42.2
Q ss_pred HHHHHhhcC-CCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEccC
Q 003927 625 ASALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSK 688 (786)
Q Consensus 625 ~~ILllFN~-~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~f~~N~~ 688 (786)
..||..|.. ...+|+.||++.+|++...+.+.|..|. ..+++.+. +..|.+...
T Consensus 17 l~iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~L~--~~G~v~~~--------~~~Y~Lg~~ 71 (257)
T 2g7u_A 17 FAVLLAFDAQRPNPTLAELATEAGLSRPAVRRILLTLQ--KLGYVAGS--------GGRWSLTPR 71 (257)
T ss_dssp HHHHHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE--------TTEEEECGG
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEeC--------CCEEEEcHH
Confidence 457778875 4579999999999999999999999997 45777653 256777554
No 157
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=37.24 E-value=44 Score=25.67 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=28.5
Q ss_pred cHHHHHHHHh-h--cCCCCccHHHHHHHhCCCHHHHHHHHhHh
Q 003927 621 TTYQASALLL-F--NSSDRLSYSEIMTQLNLSDDDVVRLLHSL 660 (786)
Q Consensus 621 s~~Q~~ILll-F--N~~~~lt~~ei~~~t~l~~~~l~~~L~~L 660 (786)
+.-|-.|+.+ | ++.+.+|++||++.+|++...++..+..-
T Consensus 7 ~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra 49 (68)
T 2p7v_B 7 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKA 49 (68)
T ss_dssp CHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4455555544 3 23467899999999999999887766543
No 158
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=36.87 E-value=44 Score=24.59 Aligned_cols=45 Identities=18% Similarity=0.338 Sum_probs=35.7
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHHHhCChhhHhHHHHHHHHH
Q 003927 483 KKLARRLLFDKSANDDHERSILTKLKQQCGGQFTSKMEGMVTDLT 527 (786)
Q Consensus 483 ~~LakRLL~~~s~s~d~E~~~I~~Lk~~~G~~~t~kl~~M~~D~~ 527 (786)
+-+.+|++.......+.-..|+..|+..-|......+-+|++-+-
T Consensus 4 rsViRSvikSS~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~ 48 (56)
T 1oks_A 4 RSVIRSIIKSSRLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKII 48 (56)
T ss_dssp HHHHHHHHHHSCSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHccccchHHHHHHHHHHHH
Confidence 346788887766777888889999998888888888888887553
No 159
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=36.61 E-value=9.8 Score=35.88 Aligned_cols=50 Identities=14% Similarity=0.137 Sum_probs=40.6
Q ss_pred EcHHHHHHHHhhcCCC---CccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSD---RLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~---~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
++..|..||......+ .+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 67 lt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le--~~GlV~r~ 119 (181)
T 2fbk_A 67 LNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLL--EKGLIERR 119 (181)
T ss_dssp CCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHH--HHTSEECC
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH--HCcCEEec
Confidence 5778888887765444 39999999999999999999999997 45777654
No 160
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=36.48 E-value=46 Score=29.43 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=36.8
Q ss_pred EEcHHHHHHHHhh----cCCCCccHHHHHHHhCCCHHHHHHHHhHhhhcccccccc
Q 003927 619 IVTTYQASALLLF----NSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNK 670 (786)
Q Consensus 619 ~vs~~Q~~ILllF----N~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~ 670 (786)
.++..|.-+|..+ ...+.+|..+|++.+|++...+.+.|..|. +.+++.+
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le--~~Gli~r 63 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLE--EKGLVKK 63 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEE
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHH--HCCCEEe
Confidence 3455555554333 345689999999999999999999999996 4466654
No 161
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=36.45 E-value=19 Score=30.03 Aligned_cols=47 Identities=13% Similarity=0.123 Sum_probs=34.8
Q ss_pred EcHHHHHHHHhhc-CCCC---ccHHHHHHHhCCCHHHHHHHHhHhhhcccccc
Q 003927 620 VTTYQASALLLFN-SSDR---LSYSEIMTQLNLSDDDVVRLLHSLSCAKYKIL 668 (786)
Q Consensus 620 vs~~Q~~ILllFN-~~~~---lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL 668 (786)
++.-+..||+.+- ..+. +|..+|++.+|++...+.+.|..|. +.+++
T Consensus 10 l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le--~~Glv 60 (95)
T 2qvo_A 10 FKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFE--EAKMV 60 (95)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHH--HTTSE
T ss_pred CchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHH--HCcCc
Confidence 3455666665542 2233 9999999999999999999999996 44555
No 162
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=35.95 E-value=39 Score=29.08 Aligned_cols=46 Identities=11% Similarity=0.302 Sum_probs=35.0
Q ss_pred HHHHHHHhhcCCCCcc--HHHHHHHh-CCCHHHHHHHHhHhhhccccccccC
Q 003927 623 YQASALLLFNSSDRLS--YSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 623 ~Q~~ILllFN~~~~lt--~~ei~~~t-~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
....||....+ +..+ +.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 28 wrl~IL~~L~~-g~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 76 (111)
T 3df8_A 28 YTMLIISVLGN-GSTRQNFNDIRSSIPGISSTILSRRIKDLI--DSGLVERR 76 (111)
T ss_dssp THHHHHHHHTS-SSSCBCHHHHHHTSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred cHHHHHHHHhc-CCCCCCHHHHHHHccCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 34456655443 4445 99999999 999999999999996 56788654
No 163
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=35.81 E-value=36 Score=32.95 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=39.0
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 621 TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 621 s~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
+..+..||.+.. .++.|+.+|++.+|++...+.++|..|. +.+++...
T Consensus 14 ~~~rl~IL~~L~-~~~~s~~eLa~~l~is~stvs~hLk~Le--~~GLV~~~ 61 (202)
T 2p4w_A 14 NETRRRILFLLT-KRPYFVSELSRELGVGQKAVLEHLRILE--EAGLIESR 61 (202)
T ss_dssp SHHHHHHHHHHH-HSCEEHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CHHHHHHHHHHH-hCCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCceEEE
Confidence 456677776664 4679999999999999999999999997 56787654
No 164
>1dp3_A TRAM protein; helix-loop-helix, DNA binding protein; NMR {Escherichia coli} SCOP: a.55.1.2
Probab=35.38 E-value=10 Score=28.40 Aligned_cols=43 Identities=12% Similarity=0.357 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHhcCCcCCH-HHHHHHHHHHHHhccCcccccHHh
Q 003927 191 GKVRDAVITLIDQEREGEQIDR-ALLKNVLDIFVEIGMGQMDYYEND 236 (786)
Q Consensus 191 ~~l~~~il~lI~~~R~g~~id~-~llk~vi~~l~~lg~~~~~~Y~~~ 236 (786)
+++.+.|-+++++.|....-+. --+.++..||.+|| +.+|+-.
T Consensus 9 ~~v~~~I~~ive~r~qeGA~~~dvs~Ssv~smLleLG---LrVYe~q 52 (55)
T 1dp3_A 9 DEIVYKINKIVERRRAEGAKSTDVSFSSISTMLLELG---LRVYEAQ 52 (55)
T ss_dssp CTHHHHHHHHHHHHHHHTCCSTTCCHHHHHHHHHHHT---TSHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHh---HHHHHHh
Confidence 3455666667777775443222 13678999999999 4677654
No 165
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=35.08 E-value=91 Score=22.48 Aligned_cols=44 Identities=16% Similarity=0.101 Sum_probs=28.3
Q ss_pred cCeeEEEE--EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHh
Q 003927 612 ESRTTELI--VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLH 658 (786)
Q Consensus 612 ~~~~~~l~--vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~ 658 (786)
++..+.+. -...+.+. .++. ..+|..+|++.+|++...+.+.+.
T Consensus 8 ~g~~~~l~~~~~~~~~i~-~l~~--~g~s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 8 QGVRYYVESEDDLVSVAH-ELAK--MGYTVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp TTEEEEECSHHHHHHHHH-HHHH--TTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred ccHHHHHhcCHHHHHHHH-HHHH--cCCCHHHHHHHHCcCHHHHHHHHH
Confidence 44455443 33333333 3343 357999999999999998887653
No 166
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=35.00 E-value=30 Score=30.88 Aligned_cols=40 Identities=23% Similarity=0.298 Sum_probs=32.6
Q ss_pred hhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 630 LFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 630 lFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
+....+.+|..+|++.+|++...+.+.|..|. +.+++.+.
T Consensus 16 l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le--~~Glv~r~ 55 (142)
T 1on2_A 16 LIEEKGYARVSDIAEALAVHPSSVTKMVQKLD--KDEYLIYE 55 (142)
T ss_dssp HHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEe
Confidence 33445679999999999999999999999996 45777653
No 167
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=34.31 E-value=48 Score=28.13 Aligned_cols=38 Identities=16% Similarity=0.316 Sum_probs=26.3
Q ss_pred cHHHHHHH-Hhhc--CCCCccHHHHHHHhCCCHHHHHHHHh
Q 003927 621 TTYQASAL-LLFN--SSDRLSYSEIMTQLNLSDDDVVRLLH 658 (786)
Q Consensus 621 s~~Q~~IL-llFN--~~~~lt~~ei~~~t~l~~~~l~~~L~ 658 (786)
+.-|-.|+ +.|- +.+.+|++||++.+|++...++..+.
T Consensus 21 p~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~ 61 (99)
T 3t72_q 21 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEA 61 (99)
T ss_pred CHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34444444 4452 34679999999999999988766543
No 168
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=34.07 E-value=17 Score=32.10 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=36.5
Q ss_pred hcceeeeccccCCC--CChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccC
Q 003927 721 IDASIVRIMKSRKV--LGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 776 (786)
Q Consensus 721 i~A~IVRiMK~rK~--l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~ 776 (786)
.+..|.+++..... ++..+|-..+ ..+.+.+-+.|+.|.++|||.|..
T Consensus 27 ~e~~il~~L~~~~~~~~t~~eLa~~l--------~~s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 27 ADLNVMKSFLNEPDRWIDTDALSKSL--------KLDVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHHHSTTCCEEHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEeeC
Confidence 35666666665555 8888886644 247888999999999999999853
No 169
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=33.93 E-value=55 Score=22.50 Aligned_cols=33 Identities=15% Similarity=0.088 Sum_probs=25.0
Q ss_pred HHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhH
Q 003927 625 ASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHS 659 (786)
Q Consensus 625 ~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~ 659 (786)
..|+.++.+ .+|..+|++.+|++...+.+.+..
T Consensus 12 ~~i~~~~~~--g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 12 AQLDVMKLL--NVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp HHHHHHHHT--TCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HHHHHHHHc--CCCHHHHHHHHCcCHHHHHHHHhh
Confidence 345555543 479999999999999988887653
No 170
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=33.79 E-value=19 Score=28.99 Aligned_cols=43 Identities=7% Similarity=0.009 Sum_probs=31.7
Q ss_pred eeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhcccccc
Q 003927 725 IVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 775 (786)
Q Consensus 725 IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~ 775 (786)
|.+.+.....++..+|... +..+...+.+.+..|.+.|+|++.
T Consensus 5 Il~~L~~~~~~s~~eLa~~--------lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 5 ILEFLNRHNGGKTAEIAEA--------LAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHSCCCCHHHHHHH--------HTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHcCCCCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEe
Confidence 4445555566776666653 445788899999999999999954
No 171
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=33.13 E-value=31 Score=30.07 Aligned_cols=50 Identities=20% Similarity=0.237 Sum_probs=41.3
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHh--CCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQL--NLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t--~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
+....-.||.+..+...+|+.+|++.+ |++...+.++|..|. +.+++...
T Consensus 11 md~~d~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le--~~GLV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLA--DHDLLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHH--HTTSEEEC
T ss_pred cCHHHHHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHH--HCCCEEec
Confidence 455667788777666789999999999 999999999999996 56788653
No 172
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=33.11 E-value=54 Score=31.39 Aligned_cols=49 Identities=10% Similarity=0.219 Sum_probs=39.3
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
.+..+..||.+..+ +.+|..||++.+|++...+.+.|..|. +.+++...
T Consensus 18 ~d~~~~~IL~~L~~-~~~s~~eLA~~lglS~stv~~~l~~Le--~~GlI~~~ 66 (192)
T 1uly_A 18 LEDTRRKILKLLRN-KEMTISQLSEILGKTPQTIYHHIEKLK--EAGLVEVK 66 (192)
T ss_dssp HSHHHHHHHHHHTT-CCBCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred CCHHHHHHHHHHHc-CCCCHHHHHHHHCcCHHHHHHHHHHHH--HCCCEEEE
Confidence 34566667766663 689999999999999999999999996 55777654
No 173
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=32.79 E-value=44 Score=29.10 Aligned_cols=59 Identities=7% Similarity=-0.003 Sum_probs=50.3
Q ss_pred HhhhhhcceeeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhcccccc
Q 003927 716 DRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 775 (786)
Q Consensus 716 dR~~~i~A~IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~ 775 (786)
-++-.++.+|..++. .+.+.--+|..++.+.....+.++...+-..+..|.++|+|++.
T Consensus 8 ~~~g~l~~~IL~~L~-~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~ 66 (116)
T 3f8b_A 8 MLRAQTNVILLNVLK-QGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSY 66 (116)
T ss_dssp HHHHHHHHHHHHHHH-HCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhchHHHHHHHHHH-hCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEE
Confidence 345567888888886 47788889999988877777899999999999999999999986
No 174
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=32.54 E-value=31 Score=29.66 Aligned_cols=46 Identities=15% Similarity=0.236 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHh-CCCHHHHHHHHhHhhhccccccccC
Q 003927 623 YQASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 623 ~Q~~ILllFN~~~~lt~~ei~~~t-~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
....||....+ +.+++.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 23 ~~~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le--~~GlI~r~ 69 (112)
T 1z7u_A 23 WKLSLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREME--KDGLVHRE 69 (112)
T ss_dssp THHHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHH--HHTSEEEE
T ss_pred cHHHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 34455544333 679999999999 999999999999996 56777654
No 175
>3on0_A Protein TRAM; DNA binding protein, DNA protein-DNA complex, tetramer, COOP binding, unwinding of DNA, kinking of DNA; 2.87A {Escherichia coli}
Probab=32.08 E-value=61 Score=28.52 Aligned_cols=55 Identities=20% Similarity=0.444 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHhccC---------cccccHHhhHHHHHHHH
Q 003927 190 NGKVRDAVITLIDQEREGEQIDRALLKNVLDIFVEIGMG---------QMDYYENDFETAMLKDT 245 (786)
Q Consensus 190 ~~~l~~~il~lI~~~R~g~~id~~llk~vi~~l~~lg~~---------~~~~Y~~~FE~~~L~~t 245 (786)
++++.+.|-+++++.|.... .---+.++..||.+||+. ...+-+..|-+.+|+.+
T Consensus 9 s~~v~~~I~~iVe~r~qeGA-~dvs~SSv~smLlELGLrVY~~Q~E~k~s~Fnq~~Fnk~lLe~v 72 (127)
T 3on0_A 9 NNNVYEQITDLVTIRKQEGI-EEASLSNVSSMLLELGLRVYMIQQEKREGGFNQMEYNKLMLENV 72 (127)
T ss_dssp CHHHHHHHHHHHHHHHTTTC-TTCCHHHHHHHHHHHHHHHHHHHHCC----CCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCc-ccccHHHHHHHHHHHhHHHHHHHHhhccCCCCHHHHHHHHHHHH
Confidence 45666777778888887665 333478999999999951 12334445555555544
No 176
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=32.06 E-value=35 Score=34.42 Aligned_cols=30 Identities=13% Similarity=0.339 Sum_probs=26.8
Q ss_pred hcCCCCccHHHHHHHhCCCHHHHHHHHhHh
Q 003927 631 FNSSDRLSYSEIMTQLNLSDDDVVRLLHSL 660 (786)
Q Consensus 631 FN~~~~lt~~ei~~~t~l~~~~l~~~L~~L 660 (786)
.+....+|+++|++.|||..+++..+|+.|
T Consensus 203 ~~~~~~isi~~is~~Tgi~~~Dii~tL~~l 232 (276)
T 3to7_A 203 VEHQKEITIDEISSMTSMTTTDILHTAKTL 232 (276)
T ss_dssp HHTCSEEEHHHHHHHHCBCHHHHHHHHHHT
T ss_pred HhcCCceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 344568999999999999999999999998
No 177
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=31.69 E-value=28 Score=28.07 Aligned_cols=36 Identities=6% Similarity=0.238 Sum_probs=30.2
Q ss_pred HHHHhhcC-CCCccHHHHHHHhCCCHHHHHHHHhHhh
Q 003927 626 SALLLFNS-SDRLSYSEIMTQLNLSDDDVVRLLHSLS 661 (786)
Q Consensus 626 ~ILllFN~-~~~lt~~ei~~~t~l~~~~l~~~L~~L~ 661 (786)
.||-.+.+ ...++..+|++.+|++.+++.++|..|-
T Consensus 23 kVLe~LkeaG~PlkageIae~~GvdKKeVdKaik~LK 59 (80)
T 2lnb_A 23 RILQVLTEAGSPVKLAQLVKECQAPKRELNQVLYRMK 59 (80)
T ss_dssp HHHHHHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45555554 4689999999999999999999999985
No 178
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=31.59 E-value=52 Score=29.48 Aligned_cols=45 Identities=11% Similarity=0.172 Sum_probs=35.8
Q ss_pred HHHHHHhhcCCCCccHHHHHHHh-CCCHHHHHHHHhHhhhccccccccC
Q 003927 624 QASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 624 Q~~ILllFN~~~~lt~~ei~~~t-~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
.+.||.... .+..++.||++.+ |++...|.+.|..|. +.+++.+.
T Consensus 28 ~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le--~~GLV~R~ 73 (131)
T 4a5n_A 28 KGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELE--ADGIVHRE 73 (131)
T ss_dssp HHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHH--HCCCEEEE
Confidence 344554444 5689999999999 999999999999997 56788764
No 179
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=31.14 E-value=1.3e+02 Score=23.94 Aligned_cols=59 Identities=8% Similarity=0.192 Sum_probs=48.3
Q ss_pred hHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHhhhhccCCh-hHHHHHHHHHHHHHHhCCCC
Q 003927 432 SAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAYISDK-DLFAEFYRKKLARRLLFDKS 494 (786)
Q Consensus 432 ~~e~La~y~D~~lkk~~~~~~~~~e~e~~l~~i~~lf~~l~~K-D~F~~~Y~~~LakRLL~~~s 494 (786)
.-+++.++++.++.++ .+++++...|+.+...+..+... +.|...|-..+.+-|..+.+
T Consensus 6 ~C~~iv~~ve~~l~~~----~t~~~I~~~l~~~C~~lp~~~~~C~~~V~~y~~~iI~~l~~~~~ 65 (78)
T 1nkl_A 6 SCRKIIQKLEDMVGPQ----PNEDTVTQAASQVCDKLKILRGLCKKIMRSFLRRISWDILTGKK 65 (78)
T ss_dssp HHHHHHHHHHHHHCSS----CCHHHHHHHHHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcC----CcHHHHHHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3467889999999853 47899999999999888875555 78999999999998887755
No 180
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=30.94 E-value=43 Score=24.86 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=26.2
Q ss_pred HHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhh
Q 003927 626 SALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 661 (786)
Q Consensus 626 ~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~ 661 (786)
-|+.++- ..+|..||++.+|++...+...+....
T Consensus 5 ~vl~l~~--~g~s~~eIA~~l~is~~tV~~~~~~~~ 38 (61)
T 2jpc_A 5 QVLKLID--EGYTNHGISEKLHISIKTVETHRMNMM 38 (61)
T ss_dssp HHHHHHH--TSCCSHHHHHHTCSCHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3444443 457999999999999999988887764
No 181
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=30.80 E-value=54 Score=29.74 Aligned_cols=45 Identities=13% Similarity=0.117 Sum_probs=34.9
Q ss_pred HHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCC
Q 003927 625 ASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP 672 (786)
Q Consensus 625 ~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~ 672 (786)
..||.... .+..++.||++.+|++...+.+.|..|. +.+++.+.+
T Consensus 27 l~IL~~L~-~g~~~~~eLa~~lgis~~tls~~L~~Le--~~GlI~r~~ 71 (146)
T 2f2e_A 27 MLIVRDAF-EGLTRFGEFQKSLGLAKNILAARLRNLV--EHGVMVAVP 71 (146)
T ss_dssp HHHHHHHH-TTCCSHHHHHHHHCCCHHHHHHHHHHHH--HTTSEEEEE
T ss_pred HHHHHHHH-hCCCCHHHHHHHhCCCHHHHHHHHHHHH--HCCCEEEEe
Confidence 34443322 3578999999999999999999999997 568887653
No 182
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=30.48 E-value=66 Score=26.10 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=27.4
Q ss_pred cHHHHHHH-Hhh--cCCCCccHHHHHHHhCCCHHHHHHHHhH
Q 003927 621 TTYQASAL-LLF--NSSDRLSYSEIMTQLNLSDDDVVRLLHS 659 (786)
Q Consensus 621 s~~Q~~IL-llF--N~~~~lt~~ei~~~t~l~~~~l~~~L~~ 659 (786)
+.-|-.|+ +.| .+...+|+.||++.+|++...++..+..
T Consensus 20 ~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~r 61 (87)
T 1tty_A 20 SPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVK 61 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 44444454 333 3346799999999999999988776544
No 183
>3kmi_A Putative membrane protein COG4129; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.96A {Clostridium difficile}
Probab=30.07 E-value=1.9e+02 Score=27.11 Aligned_cols=120 Identities=11% Similarity=0.098 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHHHHHHcccc-CC-C--cHHHHHHHHHHHHHHH-------HHHHHHHhhhhhhHhh-hccCChhhHH
Q 003927 262 CPDYMLKAEECLKREKDRVSHYL-HS-S--SEPKLLEKVQHELLSV-------YANQLLEKEHSGCHAL-LRDDKVEDLS 329 (786)
Q Consensus 262 ~~eYl~kve~~l~eE~~r~~~yL-~~-s--t~~kl~~~l~~~LI~~-------~~~~ll~~~~s~~~~l-l~~~~~~dL~ 329 (786)
+.+|..++|..++.=..+...|| .. . ....+...++..|=.. .-+.++..++.-..++ +...+.+-|+
T Consensus 10 l~~~~~~IE~~~k~Il~~~a~~L~~~~~~~~~~~~~~~l~~~i~~a~~~A~~~~~N~l~~~~~yy~~Yf~MR~~Q~~iL~ 89 (177)
T 3kmi_A 10 IHEVQKKLQEEVSIVLIDIADIIVNPKKENGYSRDLYTLNSLIDSSISETYDNINNTLLSDTRFFLEHMDIIKSQRDILE 89 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTSCCSHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHHHHHHHHHHHhcCCCcccCchHHHHHHHHHHHHHHHHH
Confidence 35566777776666666666666 32 1 2333444444322111 1111333333333333 3456778899
Q ss_pred HHHHhhccCCCChhhHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHH
Q 003927 330 RMFRLFSKIPRGLDPVSNIFKQHVTAEGTALVKLAEDAASNKKAEKRDVVGLQEQVFVRKVIELHDKYLA 399 (786)
Q Consensus 330 ~~y~L~~~~~~~l~~l~~~~~~~I~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ll~l~~k~~~ 399 (786)
+|+..+++++.. .+-+..+.+++...|..+- ..+++...+..|-.++..|..
T Consensus 90 ~m~~~i~~i~~~-~~q~~~iA~~~~~~a~~~~-----------------e~n~a~~ll~~L~~l~~~fr~ 141 (177)
T 3kmi_A 90 NLYSYVSQLNST-PPQAHILSAFIHKIGYTEF-----------------EAETGNLLLEELKRLMISMKN 141 (177)
T ss_dssp HHHHHHTTCSCC-CHHHHHHHHHHHHHHHCCC-----------------CTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCC-HHHHHHHHHHHHHHHHHcC-----------------CCCcHHHHHHHHHHHHHHHhc
Confidence 999999998543 3445555555555443321 134677788888888777754
No 184
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=30.05 E-value=45 Score=28.28 Aligned_cols=43 Identities=16% Similarity=0.313 Sum_probs=33.6
Q ss_pred HHHHhhcCCCCccHHHHHHHh-CCCHHHHHHHHhHhhhccccccccC
Q 003927 626 SALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 626 ~ILllFN~~~~lt~~ei~~~t-~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
.||.... .+..++.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 29 ~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le--~~GlV~r~ 72 (107)
T 2fsw_A 29 LIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLC--GKGLIKKK 72 (107)
T ss_dssp HHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHH--HCCCEEEe
Confidence 3444333 4679999999999 599999999999996 56777654
No 185
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=29.93 E-value=35 Score=33.87 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=34.4
Q ss_pred HHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 625 ASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 625 ~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
+.|+.+.. ++..|.++|++.+|+++..+..+|..|. +.+++.+.
T Consensus 168 ~~l~~~l~-~~~~t~~~la~~~~l~~~~V~~~l~~L~--~~~~v~~~ 211 (232)
T 2qlz_A 168 AILHYLLL-NGRATVEELSDRLNLKEREVREKISEMA--RFVPVKII 211 (232)
T ss_dssp HHHHHHHH-SSEEEHHHHHHHHTCCHHHHHHHHHHHT--TTSCEEEE
T ss_pred HHHHHHHh-cCCCCHHHHHHHhCcCHHHHHHHHHHHH--hcCCeEEe
Confidence 34444443 3678999999999999999999999996 67777543
No 186
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=29.91 E-value=69 Score=24.90 Aligned_cols=39 Identities=8% Similarity=0.135 Sum_probs=27.0
Q ss_pred cHHHHHHH-Hhh--cCCCCccHHHHHHHhCCCHHHHHHHHhH
Q 003927 621 TTYQASAL-LLF--NSSDRLSYSEIMTQLNLSDDDVVRLLHS 659 (786)
Q Consensus 621 s~~Q~~IL-llF--N~~~~lt~~ei~~~t~l~~~~l~~~L~~ 659 (786)
+.-|-.|+ +.| .+...+|+.||++.+|++...+...+..
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~r 53 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENK 53 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 44444444 333 2335789999999999999988775544
No 187
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=29.46 E-value=47 Score=29.59 Aligned_cols=48 Identities=15% Similarity=0.308 Sum_probs=36.8
Q ss_pred cHHHHHHHHhhcCCCCccHHHHHHHh-CCCHHHHHHHHhHhhhccccccccC
Q 003927 621 TTYQASALLLFNSSDRLSYSEIMTQL-NLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 621 s~~Q~~ILllFN~~~~lt~~ei~~~t-~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
......||.... .+..++.||++.+ |++...+.++|..|. +.+++.+.
T Consensus 34 ~~w~l~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le--~~GlV~r~ 82 (131)
T 1yyv_A 34 SRWGVLILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALE--QDGFLNRV 82 (131)
T ss_dssp SHHHHHHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHH--HHTCEEEE
T ss_pred CCcHHHHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHH--HCCcEEEE
Confidence 344445654444 4679999999999 799999999999996 56787654
No 188
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=29.32 E-value=18 Score=29.62 Aligned_cols=51 Identities=14% Similarity=0.289 Sum_probs=38.7
Q ss_pred eeeeccccCC---CCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 003927 724 SIVRIMKSRK---VLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMF 782 (786)
Q Consensus 724 ~IVRiMK~rK---~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y 782 (786)
.|..+++... .++..+|-.+ +..+...|.++|..|.+.|+|++.+..+..|
T Consensus 14 ~IL~~L~~~~pg~~~t~~eLA~~--------Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W 67 (81)
T 1qbj_A 14 RILKFLEELGEGKATTAHDLSGK--------LGTPKKEINRVLYSLAKKGKLQKEAGTPPLW 67 (81)
T ss_dssp HHHHHHHHHCTTCCBCHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEESSSSCEE
T ss_pred HHHHHHHHcCCCCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEecCCCCCee
Confidence 3566777777 7888777663 3356788999999999999999977655443
No 189
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=29.25 E-value=35 Score=28.06 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=31.1
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhh
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 661 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~ 661 (786)
+|.-|..|+.++ ...+|..||++.+|++...++..+....
T Consensus 30 Lt~~e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~ 69 (91)
T 2rnj_A 30 LTEREMEILLLI--AKGYSNQEIASASHITIKTVKTHVSNIL 69 (91)
T ss_dssp CCSHHHHHHHHH--HTTCCTTHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455666666666 3568999999999999999988887654
No 190
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=28.78 E-value=89 Score=30.61 Aligned_cols=84 Identities=20% Similarity=0.154 Sum_probs=58.6
Q ss_pred ccCcHHHHHHHHHHHHHHhhcCCCceeEeecCcceEEEEeEecCeeEEEEE-----cHHHHHHHHhhcCCCCccHHHHHH
Q 003927 570 LNLPAEMVKCVEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIV-----TTYQASALLLFNSSDRLSYSEIMT 644 (786)
Q Consensus 570 ~~lP~~l~~~~~~F~~~Y~~k~~~RkL~W~~~l~~~~i~~~~~~~~~~l~v-----s~~Q~~ILllFN~~~~lt~~ei~~ 644 (786)
..=|..+..+.+.++. +|.+---..|++|.+.++- +..|..||-+......+|..+++.
T Consensus 113 lVSp~Dl~~A~~~l~~----------------Lg~~~~l~~~~sg~~vvqs~~~~~~~~~~~il~~~~~~g~vt~~~la~ 176 (218)
T 3cuq_B 113 LLSPEDLVNACKMLEA----------------LKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSLTSEEFAK 176 (218)
T ss_dssp CCCHHHHHHHHHTTTT----------------TTCSEEEEECTTSBEEEEETTCCGGGGHHHHHHHHHHTSCBCHHHHHH
T ss_pred CCCHHHHHHHHHHHHH----------------cCCCEEEEEECCCcEEEEcCCCchHHHHHHHHHHHHHCCCcCHHHHHH
Confidence 3457888888776543 3332112235545544433 358888887777778999999999
Q ss_pred HhCCCHHHHHHHHhHhhhccccccccC
Q 003927 645 QLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 645 ~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
..|++....+..|..+. +-+++..+
T Consensus 177 ~l~ws~~~a~e~L~~~e--~~G~l~~D 201 (218)
T 3cuq_B 177 LVGMSVLLAKERLLLAE--KMGHLCRD 201 (218)
T ss_dssp HHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HhCCCHHHHHHHHHHHH--HcCCEEEE
Confidence 99999999999998876 45777665
No 191
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=27.77 E-value=26 Score=28.26 Aligned_cols=51 Identities=14% Similarity=0.289 Sum_probs=38.3
Q ss_pred eeeeccccCC---CCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 003927 724 SIVRIMKSRK---VLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMF 782 (786)
Q Consensus 724 ~IVRiMK~rK---~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y 782 (786)
.|..+|+... .++..+|-.. +..+...|.+.|..|.+.|+|+|.++.+..|
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~--------Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W 71 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGK--------LGTPKKEINRVLYSLAKKGKLQKEAGTPPLW 71 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHH--------HCCCHHHHHHHHHHHHHHTSEEEECSSSCEE
T ss_pred HHHHHHHHcCCCCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEecCCCCCce
Confidence 3556777777 7777777663 3356788999999999999999987655443
No 192
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=27.34 E-value=22 Score=29.43 Aligned_cols=54 Identities=6% Similarity=0.073 Sum_probs=38.9
Q ss_pred hcceeeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCce
Q 003927 721 IDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMF 782 (786)
Q Consensus 721 i~A~IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y 782 (786)
.+..|.+.+.....++..+|... +..+.+.+-+.+..|.+.|+|++..+.+..+
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~--------l~is~~tvs~~l~~L~~~glv~~~~~~r~~~ 78 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRI--------TGLSASATSQHLARMRDEGLIDSQRDAQRIL 78 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHH--------HCCCHHHHHHHHHHHHHTTSEEEEECSSCEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHH--------HCcCHHHHHHHHHHHHHCCCEEEEecCCEEE
Confidence 34456666666667777776663 3357888999999999999999987555443
No 193
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=26.66 E-value=19 Score=31.28 Aligned_cols=53 Identities=25% Similarity=0.376 Sum_probs=37.4
Q ss_pred ccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccCCCCCceeec
Q 003927 728 IMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYL 785 (786)
Q Consensus 728 iMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~~d~~~y~Y~ 785 (786)
++...+.++..+|...+-.. ...+.+.+-+.|+.|.++|||+|..+|+ .+.|+
T Consensus 18 ~l~~~~~~t~~ela~~l~~~----~~~s~~tv~~~l~~L~~~Glv~r~~~~r-r~~~~ 70 (123)
T 1okr_A 18 IIWMKKYASANNIIEEIQMQ----KDWSPKTIRTLITRLYKKGFIDRKKDNK-IFQYY 70 (123)
T ss_dssp HHHHHSSEEHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHTSEEEEEETT-EEEEE
T ss_pred HHHhCCCcCHHHHHHHHhcc----CCCcHhhHHHHHHHHHHCCCeEEEecCC-eEEEE
Confidence 33335667777777765432 2246788999999999999999987653 45554
No 194
>2ozu_A Histone acetyltransferase MYST3; structural genomics, structural G consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens} SCOP: d.108.1.1 PDB: 2rc4_A* 1m36_A
Probab=25.70 E-value=47 Score=33.67 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=22.5
Q ss_pred CCCCccHHHHHHHhCCCHHHHHHHHhHh
Q 003927 633 SSDRLSYSEIMTQLNLSDDDVVRLLHSL 660 (786)
Q Consensus 633 ~~~~lt~~ei~~~t~l~~~~l~~~L~~L 660 (786)
..+.+|+++|++.|||..+++..+|+.|
T Consensus 211 ~~~~isi~~is~~T~i~~~DIi~tL~~l 238 (284)
T 2ozu_A 211 NDKQISIKKLSKLTGICPQDITSTLHHL 238 (284)
T ss_dssp -----CHHHHHHHHCBCHHHHHHHHHHT
T ss_pred CCCcEeHHHHHHHhCCCHHHHHHHHHHC
Confidence 3468999999999999999999999998
No 195
>2ou2_A Histone acetyltransferase htatip; structural genomics, structural genomics consortium, SGC; HET: ALY ACO; 2.30A {Homo sapiens}
Probab=25.28 E-value=56 Score=33.12 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=24.1
Q ss_pred CccHHHHHHHhCCCHHHHHHHHhHh
Q 003927 636 RLSYSEIMTQLNLSDDDVVRLLHSL 660 (786)
Q Consensus 636 ~lt~~ei~~~t~l~~~~l~~~L~~L 660 (786)
.+|+++|++.|||..+++..+|+.|
T Consensus 212 ~isi~~is~~T~i~~~Dii~tL~~l 236 (280)
T 2ou2_A 212 QITINEISEITSIKKEDVISTLQYL 236 (280)
T ss_dssp CCBHHHHHHHHCBCHHHHHHHHHHT
T ss_pred ceeHHHHHHHhCCCHHHHHHHHHHC
Confidence 7999999999999999999999998
No 196
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=25.23 E-value=1.2e+02 Score=24.03 Aligned_cols=58 Identities=9% Similarity=0.154 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHhhhhc-cCCh-hHHHHHHHHHHHHHHhCCCC
Q 003927 432 SAELLATFCDNILKKGGSEKLSDEAIEEMLEKVVKLLAY-ISDK-DLFAEFYRKKLARRLLFDKS 494 (786)
Q Consensus 432 ~~e~La~y~D~~lkk~~~~~~~~~e~e~~l~~i~~lf~~-l~~K-D~F~~~Y~~~LakRLL~~~s 494 (786)
.-+++.+.++.++ ++ .+++++...|+++...+.. +.+. +.|...|...+..-|+.+.+
T Consensus 6 ~C~~~v~~le~~l-~n----~Te~~I~~~L~~vC~~l~~~~~~~C~~~V~~y~~~Ii~~L~~~~~ 65 (74)
T 1l9l_A 6 TCLTIVQKLKKMV-DK----PTQRSVSNAATRVCRTGRSRWRDVCRNFMRRYQSRVIQGLVAGET 65 (74)
T ss_dssp HHHHHHHHHHHHC-SS----CCHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHh-cc----cCHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3467778888888 53 3789999999999888876 6555 78999999999999998754
No 197
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=25.21 E-value=27 Score=28.20 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=21.8
Q ss_pred CChHHHHHHHHhhhhhccccccCCCC
Q 003927 754 PDFKAIKKRIEDLITRDYLERDKSNP 779 (786)
Q Consensus 754 p~~~~iK~~Ie~LIekeyl~R~~~d~ 779 (786)
.+...|.+-+..|.++|||+|+.+-+
T Consensus 36 vS~~TVrr~L~~Le~kG~I~R~~ggr 61 (77)
T 2jt1_A 36 LSIYQVRLYLEQLHDVGVLEKVNAGK 61 (77)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEESCSS
T ss_pred CCHHHHHHHHHHHHHCCcEEecCCCC
Confidence 36677999999999999999997543
No 198
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=24.77 E-value=43 Score=27.93 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=21.2
Q ss_pred CCCCChHHHHHHHHhhhhhcccccc
Q 003927 751 MFKPDFKAIKKRIEDLITRDYLERD 775 (786)
Q Consensus 751 ~F~p~~~~iK~~Ie~LIekeyl~R~ 775 (786)
+...+...+.++|..|.+++||+|.
T Consensus 45 ~~~l~~~tvt~iLk~LE~kglIkr~ 69 (91)
T 2dk5_A 45 KSNLPLTEINKILKNLESKKLIKAV 69 (91)
T ss_dssp HTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEEe
Confidence 4556788899999999999999943
No 199
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=24.29 E-value=63 Score=30.89 Aligned_cols=40 Identities=10% Similarity=0.001 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhh
Q 003927 623 YQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSC 662 (786)
Q Consensus 623 ~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~ 662 (786)
-|-.||-+.+++..+|.+||++.+++++..+++=|.-|.-
T Consensus 13 R~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~ 52 (190)
T 4a0z_A 13 RREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNI 52 (190)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcC
Confidence 3677888899999999999999999999999999998863
No 200
>2pq8_A Probable histone acetyltransferase MYST1; MOF, structural genomics, structural genomics consortium, SGC; HET: COA; 1.45A {Homo sapiens} PDB: 2giv_A* 3qah_A* 2y0m_A* 3toa_A* 3tob_A*
Probab=24.14 E-value=43 Score=33.91 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=21.4
Q ss_pred CCCCccHHHHHHHhCCCHHHHHHHHhHh
Q 003927 633 SSDRLSYSEIMTQLNLSDDDVVRLLHSL 660 (786)
Q Consensus 633 ~~~~lt~~ei~~~t~l~~~~l~~~L~~L 660 (786)
..+.+|+++|+++|||..+++..+|+.|
T Consensus 205 ~~~~isi~~is~~T~i~~~Dii~tL~~l 232 (278)
T 2pq8_A 205 FRGTLSIKDLSQMTSITQNDIISTLQSL 232 (278)
T ss_dssp ------CHHHHHHHCBCHHHHHHHHHHT
T ss_pred cCCCccHHHHHHHhCCCHHHHHHHHHHC
Confidence 3458999999999999999999999998
No 201
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=23.97 E-value=77 Score=26.72 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=32.1
Q ss_pred EcHHHHHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhh
Q 003927 620 VTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLS 661 (786)
Q Consensus 620 vs~~Q~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~ 661 (786)
+|.-|..||.++- ..+|..||++.+|++...++..+..+.
T Consensus 35 Lt~re~~Vl~l~~--~G~s~~EIA~~L~iS~~TV~~~l~ri~ 74 (99)
T 1p4w_A 35 LSPKESEVLRLFA--EGFLVTEIAKKLNRSIKTISSQKKSAM 74 (99)
T ss_dssp CCHHHHHHHHHHH--HTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 5667777776664 468999999999999999988887664
No 202
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=23.76 E-value=98 Score=25.23 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=27.4
Q ss_pred EcHHHHHHHHh-hcCCCCccHHHHHHHhCCCHHHHHHHHhH
Q 003927 620 VTTYQASALLL-FNSSDRLSYSEIMTQLNLSDDDVVRLLHS 659 (786)
Q Consensus 620 vs~~Q~~ILll-FN~~~~lt~~ei~~~t~l~~~~l~~~L~~ 659 (786)
++.-|-.|+.+ |- ..+|+.||++.+|++...++..+..
T Consensus 38 L~~~~r~vl~l~~~--~g~s~~eIA~~lgis~~tV~~~l~r 76 (92)
T 3hug_A 38 LSAEHRAVIQRSYY--RGWSTAQIATDLGIAEGTVKSRLHY 76 (92)
T ss_dssp SCHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34555555544 43 4589999999999999888776654
No 203
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB, DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A {Staphylococcus aureus}
Probab=22.58 E-value=47 Score=24.59 Aligned_cols=35 Identities=23% Similarity=0.563 Sum_probs=27.3
Q ss_pred ChhhHHHHHHhhccCCCCh--hhHHHHHHHHHHHHHH
Q 003927 324 KVEDLSRMFRLFSKIPRGL--DPVSNIFKQHVTAEGT 358 (786)
Q Consensus 324 ~~~dL~~~y~L~~~~~~~l--~~l~~~~~~~I~~~g~ 358 (786)
+.+|--.+|.++..+|.|- ..++++++.||.+.|.
T Consensus 32 kkedypqifdflenvprgtktahirealrryieeige 68 (70)
T 2q2k_A 32 KKEDYPQIFDFLENVPRGTKTAHIREALRRYIEEIGE 68 (70)
T ss_dssp ETTTSHHHHHHHTTSCTTCHHHHHHHHHHHHHHHCC-
T ss_pred hhhhchHHHHHHHcCCCccchHHHHHHHHHHHHHhcc
Confidence 4578889999999999885 4678888888876653
No 204
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=22.44 E-value=1e+02 Score=32.97 Aligned_cols=64 Identities=8% Similarity=0.109 Sum_probs=42.6
Q ss_pred HHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccCCC---CCCCCCCCeEEEccCCC
Q 003927 625 ASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPN---TKTISPTDHFEFNSKFT 690 (786)
Q Consensus 625 ~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~~~---~~~i~~~~~f~~N~~F~ 690 (786)
..||-+...+..+|..||++.||++...+.+.+..|.. .+++...+. +..-.+...+.+|.++.
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~--~g~i~~~~~~~~~~~GR~~~~l~~~~~~~ 85 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLE--AHLVQELEIKEAGNRGRPAVGLVVETEAW 85 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHH--HTSEEEC-------------CEEECCTTC
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHH--CCcEEeecccCCCCCCCCCeEEEEcCCcc
Confidence 45666666678899999999999999999999999973 466655321 11223555677777643
No 205
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=22.33 E-value=1.8e+02 Score=24.62 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=29.1
Q ss_pred CCCcCCHHHhHHHHHHHHHHHHHHhcCCCCCCCChhhhHHhhh
Q 003927 5 ERKTIDLEQGWEFMQKGITKLKNILEGLPEPQFSSEDYMMLYT 47 (786)
Q Consensus 5 ~~~~~~~~~~W~~~~~~i~~~~~~l~~~~~~~~~~~~ym~~yt 47 (786)
.+.+.+||+.-..|+..+.+|.+ ..++-++=+.+|.
T Consensus 26 ~~~~~sFEeal~eLEeIV~~LE~-------gel~LEesl~lye 61 (100)
T 1vp7_A 26 RPLPQDFETALAELESLVSAMEN-------GTLPLEQSLSAYR 61 (100)
T ss_dssp CCBCCSHHHHHHHHHHHHHHHHT-------TCSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc-------CCCCHHHHHHHHH
Confidence 34568899999999999999853 3477888888888
No 206
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=22.29 E-value=1.1e+02 Score=22.96 Aligned_cols=38 Identities=26% Similarity=0.151 Sum_probs=27.3
Q ss_pred cHHHHHHHHh-hcCCCCccHHHHHHHhCCCHHHHHHHHhHh
Q 003927 621 TTYQASALLL-FNSSDRLSYSEIMTQLNLSDDDVVRLLHSL 660 (786)
Q Consensus 621 s~~Q~~ILll-FN~~~~lt~~ei~~~t~l~~~~l~~~L~~L 660 (786)
+.-|-.|+.+ |- ..+|..||++.+|++...+.+.+..-
T Consensus 17 ~~~~r~il~l~~~--~g~s~~eIA~~lgis~~tv~~~~~ra 55 (70)
T 2o8x_A 17 TTDQREALLLTQL--LGLSYADAAAVCGCPVGTIRSRVARA 55 (70)
T ss_dssp CHHHHHHHHHHHT--SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--cCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555555544 43 35899999999999998887766543
No 207
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=21.21 E-value=92 Score=27.71 Aligned_cols=63 Identities=17% Similarity=0.246 Sum_probs=45.5
Q ss_pred EEcHHHHHHHHhhcC-C-CCccHHHHHHHh-----CCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEc
Q 003927 619 IVTTYQASALLLFNS-S-DRLSYSEIMTQL-----NLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFN 686 (786)
Q Consensus 619 ~vs~~Q~~ILllFN~-~-~~lt~~ei~~~t-----~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~f~~N 686 (786)
.+|.-..+||-.+.+ . ..+|.+||.+.+ +++...+-|+|..|. ..+++.+...+ .....|.++
T Consensus 15 r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~~~~---~~~~~Y~~~ 84 (136)
T 1mzb_A 15 KVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFE--AAGLVVRHNFD---GGHAVFELA 84 (136)
T ss_dssp CCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH--HHTSEEEECSS---SSSCEEEES
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHH--HCCcEEEEEeC---CCceEEEeC
Confidence 456777788876654 3 579999999998 899999999999997 56777654321 122457664
No 208
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=21.21 E-value=35 Score=31.52 Aligned_cols=47 Identities=19% Similarity=0.305 Sum_probs=39.6
Q ss_pred hcceeeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhcccccc
Q 003927 721 IDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERD 775 (786)
Q Consensus 721 i~A~IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~ 775 (786)
++..|.+.+.....++..+|-.++ ..+.+.+.++|+.|.++|+|+|-
T Consensus 4 ~d~~il~~L~~~~~~s~~~la~~l--------g~s~~tv~~rl~~L~~~g~i~~~ 50 (162)
T 3i4p_A 4 LDRKILRILQEDSTLAVADLAKKV--------GLSTTPCWRRIQKMEEDGVIRRR 50 (162)
T ss_dssp HHHHHHHHHTTCSCSCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeeec
Confidence 456788889989999988887743 46789999999999999999974
No 209
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=21.15 E-value=46 Score=29.11 Aligned_cols=25 Identities=16% Similarity=0.308 Sum_probs=21.2
Q ss_pred CCCCChHHHHHHHHhhhhhcccccc
Q 003927 751 MFKPDFKAIKKRIEDLITRDYLERD 775 (786)
Q Consensus 751 ~F~p~~~~iK~~Ie~LIekeyl~R~ 775 (786)
.+..+.+.+-+.|+.|.++|||+|.
T Consensus 62 ~l~~~~~tvs~~l~~Le~~Glv~r~ 86 (127)
T 2frh_A 62 HLNYKQPQVVKAVKILSQEDYFDKK 86 (127)
T ss_dssp HSSSHHHHHHHHHHHHHHTTSSCCB
T ss_pred HHCCCHHHHHHHHHHHHHCCCEEec
Confidence 3455778899999999999999994
No 210
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=20.93 E-value=1.1e+02 Score=27.47 Aligned_cols=64 Identities=17% Similarity=0.222 Sum_probs=46.9
Q ss_pred EEcHHHHHHHHhhc-CCCCccHHHHHHHh-----CCCHHHHHHHHhHhhhccccccccCCCCCCCCCCCeEEEcc
Q 003927 619 IVTTYQASALLLFN-SSDRLSYSEIMTQL-----NLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNS 687 (786)
Q Consensus 619 ~vs~~Q~~ILllFN-~~~~lt~~ei~~~t-----~l~~~~l~~~L~~L~~~k~kiL~~~~~~~~i~~~~~f~~N~ 687 (786)
.+|.-..+||-.+. ....+|.+||.+.+ +++...+-++|..|. ..+++.+...+ .....|.++.
T Consensus 19 r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~--e~Glv~~~~~~---~~~~~Y~~~~ 88 (145)
T 2fe3_A 19 RITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFR--ESGLVKELTYG---DASSRFDFVT 88 (145)
T ss_dssp CCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHH--HTTSEEEECCT---TSCCEEEECC
T ss_pred CCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHH--HCCCEEEEeeC---CCceEEECCC
Confidence 46677778886665 34679999999999 899999999999997 56787664321 1234577664
No 211
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=20.75 E-value=1.1e+02 Score=25.39 Aligned_cols=43 Identities=26% Similarity=0.215 Sum_probs=33.9
Q ss_pred HHHHHhhcCCCCccHHHHHHHhCCCHHHHHHHHhHhhhccccccccC
Q 003927 625 ASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKE 671 (786)
Q Consensus 625 ~~ILllFN~~~~lt~~ei~~~t~l~~~~l~~~L~~L~~~k~kiL~~~ 671 (786)
+-||..... + ++..+|+..+|+++..+.+.+..|. +.+++.+.
T Consensus 11 ~~IL~~i~~-~-~~~t~La~~~~ls~~~~~~~l~~L~--~~GLI~~~ 53 (95)
T 1r7j_A 11 QAILEACKS-G-SPKTRIMYGANLSYALTGRYIKMLM--DLEIIRQE 53 (95)
T ss_dssp HHHHHHHTT-C-BCHHHHHHHHTCCHHHHHHHHHHHH--HTTSEEEE
T ss_pred HHHHHHHHc-C-CCHHHHHHHhCcCHHHHHHHHHHHH--HCCCeEEE
Confidence 445555554 3 8999999999999999999999996 45777654
No 212
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=20.51 E-value=33 Score=28.54 Aligned_cols=47 Identities=17% Similarity=0.349 Sum_probs=34.8
Q ss_pred cceeeeccccCCCCChhHHHHHHHHHhCCCCCCChHHHHHHHHhhhhhccccccC
Q 003927 722 DASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDK 776 (786)
Q Consensus 722 ~A~IVRiMK~rK~l~~~~L~~ev~~~l~~~F~p~~~~iK~~Ie~LIekeyl~R~~ 776 (786)
+..|...+.....++..+|...+ ..+.+.+-+.|..|.++|||+|..
T Consensus 22 ~~~il~~l~~~~~~s~~ela~~l--------~is~~tv~~~l~~L~~~glv~~~~ 68 (109)
T 1sfx_A 22 DVRIYSLLLERGGMRVSEIAREL--------DLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEEe
Confidence 44455555555667777766633 457888999999999999999965
Done!