Query 003928
Match_columns 786
No_of_seqs 248 out of 1266
Neff 7.2
Searched_HMMs 46136
Date Thu Mar 28 14:28:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2188 Predicted RNA-binding 100.0 3.7E-86 8E-91 728.7 43.1 587 34-645 7-625 (650)
2 cd07920 Pumilio Pumilio-family 100.0 1.7E-38 3.8E-43 346.9 31.2 316 125-589 3-322 (322)
3 cd07920 Pumilio Pumilio-family 100.0 7.1E-35 1.5E-39 318.4 31.2 306 167-625 10-322 (322)
4 KOG1488 Translational represso 100.0 6.7E-35 1.4E-39 323.7 23.4 310 127-625 175-495 (503)
5 KOG1488 Translational represso 100.0 2.4E-32 5.1E-37 303.5 20.4 293 115-590 204-496 (503)
6 KOG2049 Translational represso 99.9 1E-26 2.2E-31 260.9 21.9 314 125-587 211-530 (536)
7 COG5099 RNA-binding protein of 99.9 2.6E-25 5.5E-30 261.2 26.6 305 136-626 446-758 (777)
8 KOG2049 Translational represso 99.9 1.5E-24 3.2E-29 243.5 18.6 314 163-625 213-532 (536)
9 COG5099 RNA-binding protein of 99.9 4.7E-24 1E-28 250.6 18.7 265 301-625 446-721 (777)
10 KOG2050 Puf family RNA-binding 99.8 2.5E-19 5.5E-24 197.7 26.1 312 96-628 129-443 (652)
11 KOG2188 Predicted RNA-binding 99.8 5.1E-18 1.1E-22 189.4 28.4 417 160-625 92-569 (650)
12 KOG2050 Puf family RNA-binding 99.5 2.4E-12 5.2E-17 143.1 27.9 389 122-599 191-620 (652)
13 KOG4574 RNA-binding protein (c 98.8 2.7E-08 5.8E-13 114.6 13.5 330 106-557 525-854 (1007)
14 PF00806 PUF: Pumilio-family R 97.8 1.7E-05 3.6E-10 57.5 3.4 34 569-602 2-35 (35)
15 PF00806 PUF: Pumilio-family R 97.8 2.8E-05 6.1E-10 56.3 3.9 33 387-420 2-34 (35)
16 KOG4574 RNA-binding protein (c 97.7 4.5E-05 9.7E-10 88.8 6.5 215 353-607 547-767 (1007)
17 smart00025 Pumilio Pumilio-lik 97.4 0.00015 3.2E-09 52.1 3.4 34 569-602 2-35 (36)
18 smart00025 Pumilio Pumilio-lik 97.2 0.00034 7.3E-09 50.2 3.2 33 388-421 3-35 (36)
19 PF08144 CPL: CPL (NUC119) dom 92.3 0.54 1.2E-05 45.8 7.9 88 278-375 46-134 (148)
20 PF08144 CPL: CPL (NUC119) dom 70.0 13 0.00029 36.2 6.6 61 566-626 59-130 (148)
21 KOG1992 Nuclear export recepto 34.1 1E+03 0.022 29.7 20.1 100 89-190 487-619 (960)
22 KOG1992 Nuclear export recepto 31.7 1.1E+03 0.024 29.4 19.3 116 277-413 634-754 (960)
23 cd01068 sensor_globin Globin d 30.5 3.9E+02 0.0084 25.2 9.6 82 93-193 12-93 (147)
24 PF03378 CAS_CSE1: CAS/CSE pro 30.2 9E+02 0.02 27.9 14.9 73 159-236 66-144 (435)
25 TIGR01589 A_thal_3526 uncharac 30.1 80 0.0017 25.6 3.7 29 439-467 3-31 (57)
26 PF09713 A_thal_3526: Plant pr 28.1 58 0.0013 26.2 2.6 28 440-467 1-28 (54)
27 smart00288 VHS Domain present 26.7 1.4E+02 0.003 28.4 5.6 47 365-411 59-106 (133)
28 cd03569 VHS_Hrs_Vps27p VHS dom 22.9 1.8E+02 0.0038 28.1 5.5 47 365-411 63-109 (142)
29 PF09770 PAT1: Topoisomerase I 20.2 1.3E+02 0.0029 37.5 5.1 58 116-173 548-617 (808)
30 KOG2072 Translation initiation 20.1 1.3E+03 0.029 28.8 12.7 48 355-403 172-219 (988)
No 1
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-86 Score=728.72 Aligned_cols=587 Identities=30% Similarity=0.432 Sum_probs=497.3
Q ss_pred CCccccccccccccCCCCCCCCCCCCCCCCCCCCCCcccccchhhccCCCCCCcccCCCCCHHHHHHHHHHHHHHhcCCC
Q 003928 34 PGRKKKGLNRKAKKESFGFDADNSNKNSSGHGADGSASARKSWKHQNASDPKTSVVRKQVDPDLAKYFAEISNLFESNEV 113 (786)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lD~e~~~Yf~~i~e~l~~~~~ 113 (786)
.++..-+|+|++..|.||+++++++||.+|+.++.-..+.+ -+-..|+.||+ .+|||+..||+++.+.++.+++
T Consensus 7 r~~~h~~~~r~~~~g~~~~~~~~skkp~~g~~~~~~~~~~~----~~e~~~q~~fg--~~dpE~~~YF~~a~~a~~~~~~ 80 (650)
T KOG2188|consen 7 RSSDHSPKRRKDEEGYRGAPADASKKPQEGRNENFRPALAK----NSEFGPQNFFG--GLDPEELGYFRRAESAFKGGFE 80 (650)
T ss_pred CCCCcchhhhccccccCCCCcccccCcCcccCCCCCCcccc----cccCCCCCCCC--CcChhhhhHHHHHHHHhhcCcc
Confidence 44445579999999999999999999999998755433332 22345778898 7899999999999999999999
Q ss_pred CHHHHHHHHHH-HHhhhccchhhhccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHhhcCcchhHHHHHHHHHhHHh
Q 003928 114 DLEERSVLCRN-ALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMH 192 (786)
Q Consensus 114 d~EEr~~~v~n-vleEi~Gkel~La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L~~d~fGShVlQkLL~~~~~~ 192 (786)
+.|||..++.| +|+|+.|+|+.|++||.+|++||+++..++..|++.||.++.++|..|++|+|||||+|++|+.++..
T Consensus 81 ~~eEr~~~f~n~i~ee~~grel~l~tnqi~Sk~le~l~~f~d~~ql~~ff~~~~g~lr~i~~~r~gshVle~~L~~~a~~ 160 (650)
T KOG2188|consen 81 RGEERNRMFVNSIFEEVYGRELDLATNQIGSKVLEDLLGFSDSRQLCDFFSALNGVLRSIAQHRFGSHVLESALEKLAAL 160 (650)
T ss_pred ccccceeeeehhHHHHhccceeehhccchhHHHHHHHhccCCchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888777 99999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred hhhhh--------------hhhhHHHHHHHHHHHHHcCch-hhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHH
Q 003928 193 LQDEH--------------AHSIIEETLKSICKVIVANPV-DVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILA 257 (786)
Q Consensus 193 ~~~e~--------------~~~~~ee~l~~i~~~l~~nl~-~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a 257 (786)
+..+. .+.++++.+..|+.++.+++. .||+|+||+||+|+++.+|.|.-+... +......
T Consensus 161 vg~e~~~~s~dea~~~ke~p~~t~e~~~~~m~nei~~~~~~~l~~~~~gshv~rt~~l~l~s~~~~~~-----~~~~~~~ 235 (650)
T KOG2188|consen 161 VGQEAALLSEDEAAVEKEGPFVTCENLLLLMLNEISPHVLKTLMELIFGSHVLRTILLLLFSMCPIAE-----SEHKLAL 235 (650)
T ss_pred hCccccccchhhhcccccCcccccchHHHHHHHHhhHHHHHHHHHHHHhHHHHHHHHHHHccCcchhh-----hHHHHHH
Confidence 65431 235677888889999999988 999999999999999999988643211 1111111
Q ss_pred HHhcccccccCCCCccCCcchHHHHHHHHHHHHHHhhhh-------hHhhhhcCcCccHHHHHHHhhhcC--CChHHHHH
Q 003928 258 ERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRK-------DLRTLQTDQYSSLVLQTALRLLVG--NDPELLQI 328 (786)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~F~~~L~~l~~~ll~~~~~-------~i~~L~~d~~gs~VLQ~lLe~~~~--~~~~l~~i 328 (786)
++....++.. ...+..+|++|+..+..++...+...++ ++..+++|+|.|.|+|.+|++... ..+.+++.
T Consensus 236 ~~~~~~~~~~-~~~~~~~pqsFp~~l~~~i~~~l~~~~~~s~~~~~~~k~~~vDk~~s~v~q~~i~l~~~~~~~~~~~~~ 314 (650)
T KOG2188|consen 236 RKAAHRGMDD-WDAVTTPPQSFPQRLIVWICTGLSALQDVSESKKRDLKGYEVDKSSSNVLQKAIRLAFDENKNDQFMES 314 (650)
T ss_pred HHHhhccccc-hhhhhcChhhccHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhcchhhhhh
Confidence 2221112211 1233347899999988888887766542 788999999999999999999865 34444433
Q ss_pred HHHHhcC---CCCCc---cCCCccccchhHhHHHhhcCCchhHHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhH
Q 003928 329 ISILLGS---NKDNV---VEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANF 402 (786)
Q Consensus 329 i~~ll~~---~~~~~---~e~~f~~~~~~~~i~~l~~d~~gS~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNy 402 (786)
+..++.+ .+.+. +|+.| +..+..|+.|||+||+++++++++.+ .+|...|.++|.+||.||+|||
T Consensus 315 ~~lv~~~~~~~e~d~~~~kE~~~--------~k~~l~d~tgSrllE~Imeva~~~~~-~lf~~~f~~rl~~La~~p~aNF 385 (650)
T KOG2188|consen 315 PRLVTKFQLFNEKDGLWGKERSF--------LKELLSDQTGSRLLEVIMEVASESLL-SLFYIVFCGRLDELAVHPIANF 385 (650)
T ss_pred hhHHHhhhhccccCcccccccHH--------HHHHHhcCcccHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHhCccccc
Confidence 2222211 11222 33333 44577899999999999999999999 5666677899999999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhHHHHHhhcCccHHHHHHHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhc
Q 003928 403 VVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFL 482 (786)
Q Consensus 403 VVQklLe~~~~~eq~~~i~~eL~~~l~~L~~~~~~~Vv~~Lie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L 482 (786)
+||++|+++++.+++..|+++|.|++..|++++++||+.+|+++|.|++++|..++++|..+|+...++.+.+++|||..
T Consensus 386 ~lQrli~h~~~~e~v~~v~eeL~P~~~~LL~~g~~gVv~sLia~~~rl~s~q~~~l~~Li~a~~~~~~~~k~il~~lL~~ 465 (650)
T KOG2188|consen 386 PLQRLINHLTSLEDVGSVIEELAPKLSSLLEQGNSGVVASLIAASARLGSYQDKMLQQLIQAFHAASESKKNILPCLLFS 465 (650)
T ss_pred hHHHHHHhccCHHHHHHHHHHHhHHHHHHHHcCCchHhHHHHHHHHhhchhHHHHHHHHHHHHhcCChhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888999988876
Q ss_pred ccccccccccCCCCCcccccccchhHHHHHHhhCCCCCcHHHHHHHHccCHHHHHHHhhCCCchHHHHHHHcCC-CChHH
Q 003928 483 ESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSK-VSAKQ 561 (786)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~lL~f~~~~~~~~v~sLl~l~~~~l~~La~d~~GS~VIq~lL~s~-~~~k~ 561 (786)
....++.. +|+.....|.+||+++|.+++|.++.++.++++|++|+.++|+++|++++||||||++|.+. .+++.
T Consensus 466 ~~~~g~~~----~~~~t~~~h~~ga~lle~lv~f~k~~i~~litsll~L~~eqi~e~~~~~~~ShlIeavL~S~~l~~~~ 541 (650)
T KOG2188|consen 466 LTLFGCVG----EWFLTEKFHQKGAVLLEELVNFSKTHIQTLITSLLSLSEEQILEMSCNGVGSHLIEAVLASKDLGEKI 541 (650)
T ss_pred hhhccccc----ccccHHHHhhchhHHHHHHHhhchhhhHHHHHHHHhhhHHHHHHHhcCCchHHHHHHHHHhccccHHH
Confidence 65544432 35666678899999999999999998999999999999999999999999999999999995 46789
Q ss_pred HHHHHHHHHHhHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhHhhhhcCCChHHHHHHcchhhhccChhHHHHHH
Q 003928 562 KHRVVLKLKGHFGELSVHPSGSFTVERCFTASSLSLRETIASELSAVRNELSKTKQGPHLIRKLDIDGFTARPDQWRLKQ 641 (786)
Q Consensus 562 r~~Li~~L~g~~~~LA~~k~GS~VVek~~~~~~~~~Ke~I~~eL~~~~~~L~~s~~Gr~V~~kl~l~~fkr~~~~W~~~~ 641 (786)
+++||+.|.|++++||++.|||||+|+||+++++.+|++||+||+...+.+.+|+||++||.||.+++|+++|+||.+.|
T Consensus 542 ~~kLi~~l~g~~~~La~~~~GSrv~eK~wea~~~~~k~rIakeL~~~~~~vk~s~~gk~v~~~~~l~ly~~~p~~W~~~~ 621 (650)
T KOG2188|consen 542 KEKLINILDGSFVTLALSTFGSRVFEKCWEATDVLYKERIAKELVGIHNDVKSSKYGKFVMLNWDLELYRRSPDDWKEKM 621 (650)
T ss_pred HHHHHHHhhccchheeecCcccHHHHHHHHHhhHHHHHHHHHHHHhhccccccCcchHHHHHhccHHHHhcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhH
Q 003928 642 SAKQ 645 (786)
Q Consensus 642 ~~~~ 645 (786)
++.+
T Consensus 622 k~~~ 625 (650)
T KOG2188|consen 622 KKSE 625 (650)
T ss_pred Hhcc
Confidence 9866
No 2
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=1.7e-38 Score=346.88 Aligned_cols=316 Identities=19% Similarity=0.238 Sum_probs=258.0
Q ss_pred HHhhhc-cchhhhccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHhhcCcchhHHHHHHHHHhHHhhhhhhhhhhHH
Q 003928 125 ALEETR-GKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIE 203 (786)
Q Consensus 125 vleEi~-Gkel~La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L~~d~fGShVlQkLL~~~~~~~~~e~~~~~~e 203 (786)
+++++. |+.+.+++|+.|||+||++|+.++++++..+++++.+++..||.|+|||||+|++|+.++..
T Consensus 3 ~~~~~~~~~~~~l~~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~~----------- 71 (322)
T cd07920 3 TLQDIKAGHIVEFAKDQHGSRFLQQKLEEATPEEKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTEE----------- 71 (322)
T ss_pred CHHhccCcchhhccCCchhhHHHHHHhccCCHHHHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCHH-----------
Confidence 466777 99999999999999999999999999999999999999999999999999999999998643
Q ss_pred HHHHHHHHHHHcCchhhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHHHHhcccccccCCCCccCCcchHHHHH
Q 003928 204 ETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELS 283 (786)
Q Consensus 204 e~l~~i~~~l~~nl~~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~~~~~~F~~~L 283 (786)
....|+..+.+++.+|+.|+|||||||+++.... + +..
T Consensus 72 -~~~~i~~~~~~~~~~l~~~~~g~~vlqkll~~~~--~---------------------------------------~~~ 109 (322)
T cd07920 72 -QRLQLLEKILGHVVRLSLDMYGCRVIQKLLESIS--E---------------------------------------EQI 109 (322)
T ss_pred -HHHHHHHHHHHHHHHHcccchhHHHHHHHHHhcC--H---------------------------------------HHH
Confidence 2345677778999999999999999999998752 0 111
Q ss_pred HHHHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcCCCCCccCCCccccchhHhHHHhhcCCch
Q 003928 284 KFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAY 363 (786)
Q Consensus 284 ~~l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~d~~g 363 (786)
..++..+. +++..|+.|++||+|+|.+++.... +....|+..+. +++..++.|++|
T Consensus 110 ~~i~~~l~----~~~~~L~~d~~gn~Vvq~~l~~~~~--~~~~~i~~~l~------------------~~~~~l~~~~~G 165 (322)
T cd07920 110 SLLVKELR----GHVVELVKDQNGNHVIQKCIEKFPP--EDLQFIIDAFK------------------GNCVALSTHPYG 165 (322)
T ss_pred HHHHHHHH----HCHHHHhhcccccHHHHHHHHhCCH--HHHHHHHHHHH------------------HHHHHHHcCccc
Confidence 12333443 4678999999999999999998632 22334554432 467789999999
Q ss_pred hHHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHhHHHHHhhcCccHHHHH
Q 003928 364 SHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAAL 443 (786)
Q Consensus 364 S~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~~eL~~~l~~L~~~~~~~Vv~~L 443 (786)
|+++|++|+.++++.+..+.+.+ .+++..|+.|+|||||||++|+... ++....|++.+.+++..|.
T Consensus 166 ~~vvq~~l~~~~~~~~~~l~~~l-~~~~~~L~~d~~Gn~vvq~~l~~~~-~~~~~~i~~~l~~~~~~l~----------- 232 (322)
T cd07920 166 CRVIQRCLEHCSEEQREPLLEEI-LEHALELVQDQFGNYVVQHVLELGD-PDDTSRIIEKLLGNIVQLS----------- 232 (322)
T ss_pred cHHHHHHHHhCCHHHHHHHHHHH-HHHHHHHhcCCchhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHH-----------
Confidence 99999999999999999888865 5889999999999999999999985 4556666666544332211
Q ss_pred HHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhcccccccccccCCCCCcccccccchhHHHHHHhhCCCC-CcH
Q 003928 444 IAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSE-FIQ 522 (786)
Q Consensus 444 ie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~lL~f~~~-~~~ 522 (786)
.+.+||.|+|++++..++ ...
T Consensus 233 ----------------------------------------------------------~~k~Gs~Vve~~l~~~~~~~~~ 254 (322)
T cd07920 233 ----------------------------------------------------------CHKFASNVVEKCLKHASKEERE 254 (322)
T ss_pred ----------------------------------------------------------cCcchHHHHHHHHHHCCHHHHH
Confidence 135788888888877664 344
Q ss_pred HHHHHHHccC--HHHHHHHhhCCCchHHHHHHHcCCCChHHHHHHHHHHHHhHHHHhcCCCChHHHHHH
Q 003928 523 PYVTSITSME--ADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKGHFGELSVHPSGSFTVERC 589 (786)
Q Consensus 523 ~~v~sLl~l~--~~~l~~La~d~~GS~VIq~lL~s~~~~k~r~~Li~~L~g~~~~LA~~k~GS~VVek~ 589 (786)
.+++.|+... .+.+..|+.|+|||||||++|+... +..++.|+..|.+++.+|+.++||++||+++
T Consensus 255 ~ii~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~-~~~~~~i~~~l~~~~~~L~~~~~G~~v~~~~ 322 (322)
T cd07920 255 LIIDEILASGNETSALDTLMKDQYGNYVIQTALDVAK-EEQRELLVEAIRPHLPSLRKSPYGKHILAKL 322 (322)
T ss_pred HHHHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHcCCCcHHHHHHhC
Confidence 6777777654 5789999999999999999999876 5788999999999999999999999999975
No 3
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=100.00 E-value=7.1e-35 Score=318.40 Aligned_cols=306 Identities=18% Similarity=0.277 Sum_probs=249.8
Q ss_pred hhHhHhhcCcchhHHHHHHHHHhHHhhhhhhhhhhHHHHHHHHHHHHHcCchhhhccCCcchHHHHHHHHhhCCCCCCch
Q 003928 167 KVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSD 246 (786)
Q Consensus 167 ~~~~~L~~d~fGShVlQkLL~~~~~~~~~e~~~~~~ee~l~~i~~~l~~nl~~Li~D~~gSHVlR~lL~~lsG~~~~~~~ 246 (786)
+++.+||.|++||+++|++|+.+.+. ....+++++.+++.+|+.|+|||||+|+++...+.
T Consensus 10 ~~~~~l~~~~~gsr~lQ~~l~~~~~~------------~~~~i~~~l~~~~~~l~~~~~g~~vvq~~l~~~~~------- 70 (322)
T cd07920 10 GHIVEFAKDQHGSRFLQQKLEEATPE------------EKELIFDEILPHVVELMVDPFGNYVIQKLFEHGTE------- 70 (322)
T ss_pred cchhhccCCchhhHHHHHHhccCCHH------------HHHHHHHHHHHhHHHHhcCccccHHHHHHHHhCCH-------
Confidence 89999999999999999999987542 34567777889999999999999999999987510
Q ss_pred hhcccchHHHHHHhcccccccCCCCccCCcchHHHHHHHHHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCChHHH
Q 003928 247 FHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELL 326 (786)
Q Consensus 247 ~~rsK~s~~~a~~~~~~~~~~~~~~~~~~~~~F~~~L~~l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~ 326 (786)
+.+ ..++..+. +++..++.|+|||+|||.+++... .+...
T Consensus 71 ------------------------------~~~----~~i~~~~~----~~~~~l~~~~~g~~vlqkll~~~~--~~~~~ 110 (322)
T cd07920 71 ------------------------------EQR----LQLLEKIL----GHVVRLSLDMYGCRVIQKLLESIS--EEQIS 110 (322)
T ss_pred ------------------------------HHH----HHHHHHHH----HHHHHHcccchhHHHHHHHHHhcC--HHHHH
Confidence 111 12333333 467899999999999999999875 23333
Q ss_pred HHHHHHhcCCCCCccCCCccccchhHhHHHhhcCCchhHHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhHHHHH
Q 003928 327 QIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQA 406 (786)
Q Consensus 327 ~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~d~~gS~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNyVVQk 406 (786)
.++..+. +.+..|+.|++|++|+|++++.++++.+..|++. +.+++..|+.|+||+.|||+
T Consensus 111 ~i~~~l~------------------~~~~~L~~d~~gn~Vvq~~l~~~~~~~~~~i~~~-l~~~~~~l~~~~~G~~vvq~ 171 (322)
T cd07920 111 LLVKELR------------------GHVVELVKDQNGNHVIQKCIEKFPPEDLQFIIDA-FKGNCVALSTHPYGCRVIQR 171 (322)
T ss_pred HHHHHHH------------------HCHHHHhhcccccHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHcCccccHHHHH
Confidence 4454432 4678899999999999999999999999988885 46899999999999999999
Q ss_pred HHhhcCCHHHHHHHHHHHHHhHHHHHhhcCccHHHHHHHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhccccc
Q 003928 407 LVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYF 486 (786)
Q Consensus 407 lLe~~~~~eq~~~i~~eL~~~l~~L~~~~~~~Vv~~Lie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L~~~~ 486 (786)
+|+.+. +++...+++++.+++.. |.
T Consensus 172 ~l~~~~-~~~~~~l~~~l~~~~~~---------------------------------------------------L~--- 196 (322)
T cd07920 172 CLEHCS-EEQREPLLEEILEHALE---------------------------------------------------LV--- 196 (322)
T ss_pred HHHhCC-HHHHHHHHHHHHHHHHH---------------------------------------------------Hh---
Confidence 999986 56677777766543211 10
Q ss_pred ccccccCCCCCcccccccchhHHHHHHhhCCCC-CcHHHHHHHHccCHHHHHHHhhCCCchHHHHHHHcCCCChHHHHHH
Q 003928 487 SCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSE-FIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRV 565 (786)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~G~~vlQ~lL~f~~~-~~~~~v~sLl~l~~~~l~~La~d~~GS~VIq~lL~s~~~~k~r~~L 565 (786)
.+.+|+.|+|++|+...+ ....+++.|. +++++|++|++||+|+|++|+... ++.++.+
T Consensus 197 ---------------~d~~Gn~vvq~~l~~~~~~~~~~i~~~l~----~~~~~l~~~k~Gs~Vve~~l~~~~-~~~~~~i 256 (322)
T cd07920 197 ---------------QDQFGNYVVQHVLELGDPDDTSRIIEKLL----GNIVQLSCHKFASNVVEKCLKHAS-KEERELI 256 (322)
T ss_pred ---------------cCCchhhHHHHHHhcCCHHHHHHHHHHHH----HHHHHHHcCcchHHHHHHHHHHCC-HHHHHHH
Confidence 134799999999998764 2334555554 789999999999999999999875 4788999
Q ss_pred HHHHH------HhHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHhHhhhhcCCChHHHHHHc
Q 003928 566 VLKLK------GHFGELSVHPSGSFTVERCFTASSLSLRETIASELSAVRNELSKTKQGPHLIRKL 625 (786)
Q Consensus 566 i~~L~------g~~~~LA~~k~GS~VVek~~~~~~~~~Ke~I~~eL~~~~~~L~~s~~Gr~V~~kl 625 (786)
++.+. +++.+|+.|+||++||+++|+.++...++.|+.+|.++..+|+.++||+.|+.+|
T Consensus 257 i~~l~~~~~~~~~l~~l~~d~~Gn~Viq~~l~~~~~~~~~~i~~~l~~~~~~L~~~~~G~~v~~~~ 322 (322)
T cd07920 257 IDEILASGNETSALDTLMKDQYGNYVIQTALDVAKEEQRELLVEAIRPHLPSLRKSPYGKHILAKL 322 (322)
T ss_pred HHHHhcCCCchhHHHHHhCCCcccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHhC
Confidence 99994 5999999999999999999999999999999999999999999999999999875
No 4
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.7e-35 Score=323.72 Aligned_cols=310 Identities=18% Similarity=0.238 Sum_probs=208.3
Q ss_pred hhhccchhhhccCCchhHHHHHHhcCCCH-HHHHHHHHHHhhhHhHhhcCcchhHHHHHHHHHhHHhhhhhhhhhhHHHH
Q 003928 127 EETRGKELELATDYIISHTLQTLLEGCDV-DHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEET 205 (786)
Q Consensus 127 eEi~Gkel~La~dq~gSrvLEkLl~~~~~-eql~~~l~~l~~~~~~L~~d~fGShVlQkLL~~~~~~~~~e~~~~~~ee~ 205 (786)
..+.|+.++++.||+|||+||.-++.+++ ++...+|+++.+.+..||+|.||+||||+.|++.....
T Consensus 175 ~~~~~~~v~f~~Dq~GsrfiQqkl~~~~~~~ek~~if~ei~~~~~~L~~dvFGNyvIQkffE~gt~~q------------ 242 (503)
T KOG1488|consen 175 VDIPGHLVEFAKDQHGSRFIQQKLETASDNEEKQAVFDEILPPALELMTDVFGNYVIQKFFEHGTEDQ------------ 242 (503)
T ss_pred cccCCCceeecCCcccchHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhhccCCHHH------------
Confidence 45679999999999999999999999988 88999999999999999999999999999998776432
Q ss_pred HHHHHHHHHcCchhhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHHHHhcccccccCCCCccCCcchHHHHHHH
Q 003928 206 LKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKF 285 (786)
Q Consensus 206 l~~i~~~l~~nl~~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~~~~~~F~~~L~~ 285 (786)
-..+...+.+++..|+.|.|||||||+.|+.+.-. + --+
T Consensus 243 ~~~l~~~~~g~v~~Lsld~ygCRVIQkale~id~~--------------------------------------~---~~~ 281 (503)
T KOG1488|consen 243 RNLLHSQIKGHVLELSLDMYGCRVIQKALEKVDVS--------------------------------------L---QIQ 281 (503)
T ss_pred HHHHHHHHHhhhhhhhcccccchhHHHHHHhcCHH--------------------------------------H---HHH
Confidence 23455666788999999999999999999775100 0 001
Q ss_pred HHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcCCCCCccCCCccccchhHhHHHhhcCCchhH
Q 003928 286 LISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSH 365 (786)
Q Consensus 286 l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~d~~gS~ 365 (786)
|+.+|- ..+.. ++.|++|+|
T Consensus 282 Li~ELd----~~vl~--------------------------------------------------------~v~DQngnH 301 (503)
T KOG1488|consen 282 LIDELD----GHLLK--------------------------------------------------------CVKDQNGNH 301 (503)
T ss_pred HHHHHH----hhHHH--------------------------------------------------------HHhhcccce
Confidence 222220 22333 444555555
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhHh--hHHhhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHhHHHHHhhcCccHHHHH
Q 003928 366 LMEVILEVAPQSLYDEMFTKVFRN--SLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAAL 443 (786)
Q Consensus 366 vlEk~L~~~~~~~~~~i~~~~~~~--~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~~eL~~~l~~L~~~~~~~Vv~~L 443 (786)
|+|+|++..|++....|++ +|.+ ++..||.|+|||.|||++||+|.. ++...|+++|..++..|..
T Consensus 302 ViQK~ie~~p~~~~~Fiv~-~f~~~~~~~~ls~~~YGCRVIQr~lE~c~~-~~~~~i~~ei~~~~~~L~~---------- 369 (503)
T KOG1488|consen 302 VIQKCIETLPPDAWQFIVD-FFSGDDNLLELSTHKYGCRVIQRILEHCSE-DQKQPLMEEIIRNCDQLAQ---------- 369 (503)
T ss_pred ehhhhhhccChHHHHHHHH-HhcCCCceeEeeccCcccHHHHHHhhcCCh-HhhhHHHHHHHHHHHHHHh----------
Confidence 5555555555544444443 3344 555555555555555555555542 3333344444322211110
Q ss_pred HHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhcccccccccccCCCCCcccccccchhHHHHHHhhCCCCCcH-
Q 003928 444 IAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQ- 522 (786)
Q Consensus 444 ie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~lL~f~~~~~~- 522 (786)
+.+|..|+|++++.+++...
T Consensus 370 -----------------------------------------------------------dQygNYVIQHVie~g~~~~~~ 390 (503)
T KOG1488|consen 370 -----------------------------------------------------------DQYGNYVIQHVIEHGSPYRDT 390 (503)
T ss_pred -----------------------------------------------------------hhhhhHHHHHHHhcCChhhhh
Confidence 12455555555555544222
Q ss_pred HHHHHHHccCHHHHHHHhhCCCchHHHHHHHcCCCChHHHHHHHHHHHHh-------HHHHhcCCCChHHHHHHHhcCCH
Q 003928 523 PYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKGH-------FGELSVHPSGSFTVERCFTASSL 595 (786)
Q Consensus 523 ~~v~sLl~l~~~~l~~La~d~~GS~VIq~lL~s~~~~k~r~~Li~~L~g~-------~~~LA~~k~GS~VVek~~~~~~~ 595 (786)
.+++.|+ ..+++|++|.|+|+|||.+|..+. ...|..+++++.+. +..|+.|+||+|||++|++.+..
T Consensus 391 ~I~~~l~----~~ll~~Sq~KfASnVVEk~~~~a~-~~~r~~i~~Ei~~~~~~~~~~L~~mmkdQYgNYVVQkmi~~~~~ 465 (503)
T KOG1488|consen 391 IIIKCLL----GNLLSMSQHKFASNVVEKAFLFAP-PLLRALIMNEIFPGYVEHPDALDIMMKDQYGNYVVQKMIDICGP 465 (503)
T ss_pred hHHHHHH----hhHHHHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHhcCCccCCccHHHHHHHHhhhhhHHHHHHHhcCH
Confidence 2334443 467788888888888888887764 35777788877643 56678888888888888888888
Q ss_pred HHHHHHHHHHHHhHhhhhcCCChHHHHHHc
Q 003928 596 SLRETIASELSAVRNELSKTKQGPHLIRKL 625 (786)
Q Consensus 596 ~~Ke~I~~eL~~~~~~L~~s~~Gr~V~~kl 625 (786)
.+|+.|+..+..+...|++..||++|+.++
T Consensus 466 ~q~~~i~~rI~~h~~~Lrk~syGKhIia~l 495 (503)
T KOG1488|consen 466 EQRELIKSRVKPHASRLRKFSYGKHIIAKL 495 (503)
T ss_pred HHHHHHHHHHHHHHHHHccCccHHHHHHHH
Confidence 888888888888888888888888888764
No 5
>KOG1488 consensus Translational repressor Pumilio/PUF3 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-32 Score=303.47 Aligned_cols=293 Identities=18% Similarity=0.211 Sum_probs=230.7
Q ss_pred HHHHHHHHHHHHhhhccchhhhccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHhhcCcchhHHHHHHHHHhHHhhh
Q 003928 115 LEERSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQ 194 (786)
Q Consensus 115 ~EEr~~~v~nvleEi~Gkel~La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L~~d~fGShVlQkLL~~~~~~~~ 194 (786)
.||+..+++.+++ ..+.|++|.+|++++|+++++++.+|...+...+.+++..||.|.|||||||++|+.....+
T Consensus 204 ~~ek~~if~ei~~----~~~~L~~dvFGNyvIQkffE~gt~~q~~~l~~~~~g~v~~Lsld~ygCRVIQkale~id~~~- 278 (503)
T KOG1488|consen 204 NEEKQAVFDEILP----PALELMTDVFGNYVIQKFFEHGTEDQRNLLHSQIKGHVLELSLDMYGCRVIQKALEKVDVSL- 278 (503)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHhcCchhhhhhccCCHHHHHHHHHHHHhhhhhhhcccccchhHHHHHHhcCHHH-
Confidence 3788766665555 78999999999999999999999999999999999999999999999999999999876543
Q ss_pred hhhhhhhHHHHHHHHHHHHHcCchhhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHHHHhcccccccCCCCccC
Q 003928 195 DEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSY 274 (786)
Q Consensus 195 ~e~~~~~~ee~l~~i~~~l~~nl~~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~~ 274 (786)
-..|+.+|..++..++.|++|+||||++++.+ |
T Consensus 279 -----------~~~Li~ELd~~vl~~v~DQngnHViQK~ie~~---p--------------------------------- 311 (503)
T KOG1488|consen 279 -----------QIQLIDELDGHLLKCVKDQNGNHVIQKCIETL---P--------------------------------- 311 (503)
T ss_pred -----------HHHHHHHHHhhHHHHHhhcccceehhhhhhcc---C---------------------------------
Confidence 23567777889999999999999999999876 1
Q ss_pred CcchHHHHHHHHHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcCCCCCccCCCccccchhHhH
Q 003928 275 HHPVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDV 354 (786)
Q Consensus 275 ~~~~F~~~L~~l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i 354 (786)
+. .+..+++.+... +++..+++|+|||.|||.+||.|...+ ...+++.|. .++
T Consensus 312 -~~----~~~Fiv~~f~~~--~~~~~ls~~~YGCRVIQr~lE~c~~~~--~~~i~~ei~------------------~~~ 364 (503)
T KOG1488|consen 312 -PD----AWQFIVDFFSGD--DNLLELSTHKYGCRVIQRILEHCSEDQ--KQPLMEEII------------------RNC 364 (503)
T ss_pred -hH----HHHHHHHHhcCC--CceeEeeccCcccHHHHHHhhcCChHh--hhHHHHHHH------------------HHH
Confidence 11 112233333221 468899999999999999999987543 223555443 466
Q ss_pred HHhhcCCchhHHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHhHHHHHhh
Q 003928 355 LNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEM 434 (786)
Q Consensus 355 ~~l~~d~~gS~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~~eL~~~l~~L~~~ 434 (786)
..|+.|++|++|+|-+|+++++.... ++..++.++++.|+.|.||..||.+++.++. ..++..|++|+.+.
T Consensus 365 ~~L~~dQygNYVIQHVie~g~~~~~~-~I~~~l~~~ll~~Sq~KfASnVVEk~~~~a~-~~~r~~i~~Ei~~~------- 435 (503)
T KOG1488|consen 365 DQLAQDQYGNYVIQHVIEHGSPYRDT-IIIKCLLGNLLSMSQHKFASNVVEKAFLFAP-PLLRALIMNEIFPG------- 435 (503)
T ss_pred HHHHhhhhhhHHHHHHHhcCChhhhh-hHHHHHHhhHHHHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHhcCC-------
Confidence 77889999999999999998885444 4444667889999999999999999998886 44566666655210
Q ss_pred cCccHHHHHHHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhcccccccccccCCCCCcccccccchhHHHHHHh
Q 003928 435 GRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVF 514 (786)
Q Consensus 435 ~~~~Vv~~Lie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~lL 514 (786)
T Consensus 436 -------------------------------------------------------------------------------- 435 (503)
T KOG1488|consen 436 -------------------------------------------------------------------------------- 435 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hCCCCCcHHHHHHHHccCHHHHHHHhhCCCchHHHHHHHcCCCChHHHHHHHHHHHHhHHHHhcCCCChHHHHHHH
Q 003928 515 RFPSEFIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKGHFGELSVHPSGSFTVERCF 590 (786)
Q Consensus 515 ~f~~~~~~~~v~sLl~l~~~~l~~La~d~~GS~VIq~lL~s~~~~k~r~~Li~~L~g~~~~LA~~k~GS~VVek~~ 590 (786)
..+. ++.|..|+.|+|||||||.+|+... +.+|+.|+.++++|...|-..+||-|+++++=
T Consensus 436 --~~~~------------~~~L~~mmkdQYgNYVVQkmi~~~~-~~q~~~i~~rI~~h~~~Lrk~syGKhIia~le 496 (503)
T KOG1488|consen 436 --YVEH------------PDALDIMMKDQYGNYVVQKMIDICG-PEQRELIKSRVKPHASRLRKFSYGKHIIAKLE 496 (503)
T ss_pred --ccCC------------ccHHHHHHHHhhhhhHHHHHHHhcC-HHHHHHHHHHHHHHHHHHccCccHHHHHHHHH
Confidence 0000 0246789999999999999999985 57899999999999999999999999998853
No 6
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=1e-26 Score=260.86 Aligned_cols=314 Identities=20% Similarity=0.258 Sum_probs=240.6
Q ss_pred HHhhhccchhhhccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHhhcCcchhHHHHHHHHHhHHhhhhhhhhhhHHH
Q 003928 125 ALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEE 204 (786)
Q Consensus 125 vleEi~Gkel~La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L~~d~fGShVlQkLL~~~~~~~~~e~~~~~~ee 204 (786)
.+.+..|....+|+|+.||+++|+++..++..++..|+.++..++.+|+.|+||++++|++++.+...
T Consensus 211 ~~~~~~~~~~~~akd~~gc~~lq~~~~~~~~~~~~~if~~~~~~~~~Lm~d~fGny~vqkl~~~~~~e------------ 278 (536)
T KOG2049|consen 211 SMVEIQGSINLIAKDQHGCRLLQKLLSEGTKVSILKIFLETIQDVPELMEDPFGNYLVQKLLEVCDEE------------ 278 (536)
T ss_pred hhhccchhhhhhcccccCCcccccCcccCccccHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhCHH------------
Confidence 34677799999999999999999999999999999999999999999999999999999999987642
Q ss_pred HHHHHHHHHHc---CchhhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHHHHhcccccccCCCCccCCcchHHH
Q 003928 205 TLKSICKVIVA---NPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSE 281 (786)
Q Consensus 205 ~l~~i~~~l~~---nl~~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~~~~~~F~~ 281 (786)
.+..|...|.. .++.++++.|||+++|+++...... +
T Consensus 279 q~~~i~~~lts~p~~fv~i~~N~~GTr~iQkl~~~~~~~----------------------------------------d 318 (536)
T KOG2049|consen 279 QLTKIVSLLTSDPRLFVEICTNMYGTRAVQKLLGKSDSV----------------------------------------D 318 (536)
T ss_pred HHHHHHHHHhcCccceeEeeecCchhHHHHHHHhccccH----------------------------------------H
Confidence 33445555543 5799999999999999999654100 1
Q ss_pred HHHHHHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcCCCCCccCCCccccchhHhHHHhhcCC
Q 003928 282 LSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKET 361 (786)
Q Consensus 282 ~L~~l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~d~ 361 (786)
.+.-+++.|. ..+..|+.|.||++|||.+|++......++ +.+.++ +...+++.|+
T Consensus 319 qI~~~~~ai~----~~fl~L~~D~~g~~Viq~cl~~f~~~~~~~--l~e~i~------------------~~c~~iA~~~ 374 (536)
T KOG2049|consen 319 QISLFLDAIK----PNFLHLIKDKNGNHVIQRCLRVFSKEKNEF--LYEAIL------------------RYCLDLATDQ 374 (536)
T ss_pred HHHHHHHHHH----hhhHHhhhhcchhHHHHHHHHhcCchhhhH--HHHHHH------------------HHHHHHHHhc
Confidence 1112233332 357789999999999999999876443222 222211 3566899999
Q ss_pred chhHHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHhHHHHHhhcCccHHH
Q 003928 362 AYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVA 441 (786)
Q Consensus 362 ~gS~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~~eL~~~l~~L~~~~~~~Vv~ 441 (786)
+||.|||+||.....+.++.+++.+ ..+...|+.|+|||||||.+|+--. +.-...|.+.|.++..+|
T Consensus 375 hGCcvLq~cl~~~~~~~rd~Lv~~i-~~naL~Ls~d~~GNyvVQyvl~L~~-~~~t~~i~~~L~g~~veL---------- 442 (536)
T KOG2049|consen 375 HGCCVLQKCLDYSRGEQRDRLVEEI-SRNALLLSNDPYGNYVVQYVLELND-PSCTVNIAEKLRGHYVEL---------- 442 (536)
T ss_pred cccchhHHHhcchhHHHHHHHHHHH-HHHhHhhhcCccccchhhhhhhhcC-cchHHHHHHhhhhHHHHH----------
Confidence 9999999999999999999999866 5677789999999999999998653 222344444444332111
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhcccccccccccCCCCCcccccccchhHHHHHHhhCCCCCc
Q 003928 442 ALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFI 521 (786)
Q Consensus 442 ~Lie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~lL~f~~~~~ 521 (786)
+++.+|+.|+++||+......
T Consensus 443 -----------------------------------------------------------S~qKfgS~vVEk~L~~~~~~~ 463 (536)
T KOG2049|consen 443 -----------------------------------------------------------SFQKFGSHVVEKLLKVRESSR 463 (536)
T ss_pred -----------------------------------------------------------HHHhhccHHHHHHHhcCcchh
Confidence 123479999999998887654
Q ss_pred HHHHHHHHccCHHHHHHHhhCCCchHHHHHHHcCCCC---hHHHHHHHHHHHHhHHHHhcCCCChHHHH
Q 003928 522 QPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVS---AKQKHRVVLKLKGHFGELSVHPSGSFTVE 587 (786)
Q Consensus 522 ~~~v~sLl~l~~~~l~~La~d~~GS~VIq~lL~s~~~---~k~r~~Li~~L~g~~~~LA~~k~GS~VVe 587 (786)
.++|..|++. +.+..|+.|+||+||||+.|..... +..+..++.++...+..|.++++|..+..
T Consensus 464 ~~iV~ell~~--~~~~~Ll~D~ygNyViq~AL~vtk~~~~~~~~~~lv~~~~~~~~~lr~~p~~~~~~~ 530 (536)
T KOG2049|consen 464 AQIVLELLSC--DELDRLLRDPYGNYVIQTALRVTKVKLREDLFGLLVQKLMPRIRLLRNNPGGNIALI 530 (536)
T ss_pred hHHHHHHHcc--ccHHHHhhCccchHHHHHHHHHhhhcccchhhHHHHHHHhhhhHHhhcCcccceeee
Confidence 6788888877 7799999999999999999887541 24567788888888888888888876654
No 7
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.6e-25 Score=261.19 Aligned_cols=305 Identities=16% Similarity=0.227 Sum_probs=232.4
Q ss_pred hccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHhhcCcchhHHHHHHHHHhHHhhhhhhhhhhHHHHHHHHHHHHHc
Q 003928 136 LATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVA 215 (786)
Q Consensus 136 La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L~~d~fGShVlQkLL~~~~~~~~~e~~~~~~ee~l~~i~~~l~~ 215 (786)
++.||.|||.||++|...+.+++..|+.++.+...+|+.|.||++|+|++|+.+...+ ...+...+.+
T Consensus 446 ~~~Dq~g~r~LQk~Lds~s~~~~~~~~~e~~d~~~eLs~d~fGNyliQK~fe~~s~~q------------~~~ml~~~~~ 513 (777)
T COG5099 446 SCKDQHGSRFLQKLLDSNSSPEIEVIFNEILDQLVELSSDYFGNYLIQKLFEYGSEIQ------------KSIMLSKSSK 513 (777)
T ss_pred ccCCcHHHHHHHHHhcccchHHHHHHHHHHhhhhHHHHHhhhcchhhHHHHHhccHHH------------HHHHHHHhhh
Confidence 3599999999999999999999999999999999999999999999999999987543 3456666778
Q ss_pred CchhhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHHHHhcccccccCCCCccCCcchHHHHHHHHHHHHHHhhh
Q 003928 216 NPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSR 295 (786)
Q Consensus 216 nl~~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~~~~~~F~~~L~~l~~~ll~~~~ 295 (786)
++..+..|.||+||+|+++.+..-. .. +..++..|
T Consensus 514 ~~~~ls~~~~Gtrv~QK~id~~~t~-------------------------------------~q---i~~lv~~l----- 548 (777)
T COG5099 514 HLVSLSVHKYGTRVLQKAIDIVSTD-------------------------------------IQ---ISLLVEEL----- 548 (777)
T ss_pred hHHHhhccccccHHHHHHHhccCch-------------------------------------hh---HHHHHHHh-----
Confidence 8899999999999999999765110 00 00011111
Q ss_pred hhHhhhhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcCCCCCccCCCccccchhHhHHHhhcCCchhHHHHHHHhhCC
Q 003928 296 KDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAP 375 (786)
Q Consensus 296 ~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~d~~gS~vlEk~L~~~~ 375 (786)
. +.+..+++|++|+||+|+|++..+
T Consensus 549 ---------------------------------~----------------------~~~~~li~dqngNHviqKci~~~~ 573 (777)
T COG5099 549 ---------------------------------R----------------------PYCLQLIKDQNGNHVIQKCIEKFN 573 (777)
T ss_pred ---------------------------------h----------------------hhhHHHHHhccCCHHHHHHHHhcC
Confidence 0 233457777888888888888777
Q ss_pred HHHHHHHHHHHhHhhHHhhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHhHHHHHhhcCccHHHHHHHHHHhhhhhhH
Q 003928 376 QSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHER 455 (786)
Q Consensus 376 ~~~~~~i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~~eL~~~l~~L~~~~~~~Vv~~Lie~c~r~~~~q~ 455 (786)
.+..+-||+.+ .+++.+++.|.||++|||+++|++... +.+.++++|.++..
T Consensus 574 ~~~~~fif~~~-~~~~~~is~~r~Gs~vvq~~le~~~~~-~~~~~~~~Ii~~~~-------------------------- 625 (777)
T COG5099 574 KEKNQFIFDSI-NENLYDLSTHRYGSRVVQRCLENCNSE-DKENLVEEIISNSK-------------------------- 625 (777)
T ss_pred ccccchHHHHH-HhhhHhhhccccccHHHHHHHHhccHh-HHHHHHHHHHHHHH--------------------------
Confidence 77777777754 577788999999999999999998743 34555555533221
Q ss_pred HHHHHHHHhhccCCCcccchhhhhhhcccccccccccCCCCCcccccccchhHHHHHHhhCCCCC-cHHHHHHHHccCHH
Q 003928 456 KCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEF-IQPYVTSITSMEAD 534 (786)
Q Consensus 456 ~~i~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~lL~f~~~~-~~~~v~sLl~l~~~ 534 (786)
.|. .+.+|.+|||++|+.+.+. ...++..++. .
T Consensus 626 -------------------------~L~------------------~dq~GNyvvq~il~~g~~~~k~~i~~~~l~---~ 659 (777)
T COG5099 626 -------------------------YLS------------------QDQYGNYVVQHILDNGAEPNKERIIIKLLS---K 659 (777)
T ss_pred -------------------------hhc------------------cCCcchhhhhHHhhcCCCcchhHHHHHHHH---H
Confidence 110 1347888999998877643 3355666664 3
Q ss_pred HHHHHhhCCCchHHHHHHHcCCCChHHHHHHHHHHHH-------hHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHH
Q 003928 535 HVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKG-------HFGELSVHPSGSFTVERCFTASSLSLRETIASELSA 607 (786)
Q Consensus 535 ~l~~La~d~~GS~VIq~lL~s~~~~k~r~~Li~~L~g-------~~~~LA~~k~GS~VVek~~~~~~~~~Ke~I~~eL~~ 607 (786)
.+++|++|++||.|||.++..+.....|++|+..+.. -+-.|+.+.||.||++.++.+++...|..+++-+..
T Consensus 660 ~v~elS~~kfaSnvVeK~i~~~~~~~~~~ril~~~~~~~~~~~~~l~~i~~d~y~Nyv~q~~~~~s~~~~~~l~~~~i~~ 739 (777)
T COG5099 660 RVVELSTHKFASNVVEKCIKYASDSFKRSRILNELTNRGIEKPGFLMLILDDQYANYVIQYLLDVSPEIQRSLLARAIKK 739 (777)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhcccccCChHHHHHHHhhhcchHHHHHHhhCchhhHHHHHHHHHH
Confidence 7899999999999999999887532225788887753 367889999999999999999999999999999999
Q ss_pred hHhhhhcCCChHHHHHHcc
Q 003928 608 VRNELSKTKQGPHLIRKLD 626 (786)
Q Consensus 608 ~~~~L~~s~~Gr~V~~kl~ 626 (786)
....|.++.||+++.+.+.
T Consensus 740 ~~~~l~~s~~g~~i~~~le 758 (777)
T COG5099 740 VIPSLKKSMYGQHILALLE 758 (777)
T ss_pred HHHHHhcCCccHHHHHHHH
Confidence 9999999999999887763
No 8
>KOG2049 consensus Translational repressor MPT5/PUF4 and related RNA-binding proteins (Puf superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=1.5e-24 Score=243.50 Aligned_cols=314 Identities=17% Similarity=0.247 Sum_probs=240.8
Q ss_pred HHHhhhHhHhhcCcchhHHHHHHHHHhHHhhhhhhhhhhHHHHHHHHHHHHHcCchhhhccCCcchHHHHHHHHhhCCCC
Q 003928 163 RGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPL 242 (786)
Q Consensus 163 ~~l~~~~~~L~~d~fGShVlQkLL~~~~~~~~~e~~~~~~ee~l~~i~~~l~~nl~~Li~D~~gSHVlR~lL~~lsG~~~ 242 (786)
..+.+++..+|+|++||+++|+++...... .+..|..++...+.+|+.|+||+.++|+++.++.-.
T Consensus 213 ~~~~~~~~~~akd~~gc~~lq~~~~~~~~~------------~~~~if~~~~~~~~~Lm~d~fGny~vqkl~~~~~~e-- 278 (536)
T KOG2049|consen 213 VEIQGSINLIAKDQHGCRLLQKLLSEGTKV------------SILKIFLETIQDVPELMEDPFGNYLVQKLLEVCDEE-- 278 (536)
T ss_pred hccchhhhhhcccccCCcccccCcccCccc------------cHHHHHHHHHHHHHHHHhccchhHHHHHHHHhhCHH--
Confidence 345588999999999999999999876532 234566666778899999999999999999887211
Q ss_pred CCchhhcccchHHHHHHhcccccccCCCCccCCcchHHHHHHHHHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCC
Q 003928 243 DSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGND 322 (786)
Q Consensus 243 ~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~~~~~~F~~~L~~l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~ 322 (786)
.+..++..+... ...+..++++++|+.+||.+++.....+
T Consensus 279 ---------------------------------------q~~~i~~~lts~-p~~fv~i~~N~~GTr~iQkl~~~~~~~d 318 (536)
T KOG2049|consen 279 ---------------------------------------QLTKIVSLLTSD-PRLFVEICTNMYGTRAVQKLLGKSDSVD 318 (536)
T ss_pred ---------------------------------------HHHHHHHHHhcC-ccceeEeeecCchhHHHHHHHhccccHH
Confidence 111222333221 1346789999999999999999865544
Q ss_pred hHHHHHHHHHhcCCCCCccCCCccccchhHhHHHhhcCCchhHHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhH
Q 003928 323 PELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANF 402 (786)
Q Consensus 323 ~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~d~~gS~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNy 402 (786)
++.-++..|. ..+..|++|.+|+||+++||.+-+++..+.+|+.+. ....++|.|.+||.
T Consensus 319 -qI~~~~~ai~------------------~~fl~L~~D~~g~~Viq~cl~~f~~~~~~~l~e~i~-~~c~~iA~~~hGCc 378 (536)
T KOG2049|consen 319 -QISLFLDAIK------------------PNFLHLIKDKNGNHVIQRCLRVFSKEKNEFLYEAIL-RYCLDLATDQHGCC 378 (536)
T ss_pred -HHHHHHHHHH------------------hhhHHhhhhcchhHHHHHHHHhcCchhhhHHHHHHH-HHHHHHHHhccccc
Confidence 2222333222 346689999999999999999999888888888664 67789999999999
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHhHHHHHhhcCccHHHHHHHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhc
Q 003928 403 VVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFL 482 (786)
Q Consensus 403 VVQklLe~~~~~eq~~~i~~eL~~~l~~L~~~~~~~Vv~~Lie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L 482 (786)
|+|++|..... ++.+.+++++..+- . .|..
T Consensus 379 vLq~cl~~~~~-~~rd~Lv~~i~~na-------------------L------------------------------~Ls~ 408 (536)
T KOG2049|consen 379 VLQKCLDYSRG-EQRDRLVEEISRNA-------------------L------------------------------LLSN 408 (536)
T ss_pred hhHHHhcchhH-HHHHHHHHHHHHHh-------------------H------------------------------hhhc
Confidence 99999999864 67777777763210 0 1111
Q ss_pred ccccccccccCCCCCcccccccchhHHHHHHhhCCCCCcHHHHHHHHccCHHHHHHHhhCCCchHHHHHHHcCCCChHHH
Q 003928 483 ESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQK 562 (786)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~lL~f~~~~~~~~v~sLl~l~~~~l~~La~d~~GS~VIq~lL~s~~~~k~r 562 (786)
+.+|..|+|++++...+.. ...++.....+.++|+...|||||||.||+... ..+
T Consensus 409 --------------------d~~GNyvVQyvl~L~~~~~---t~~i~~~L~g~~veLS~qKfgS~vVEk~L~~~~--~~~ 463 (536)
T KOG2049|consen 409 --------------------DPYGNYVVQYVLELNDPSC---TVNIAEKLRGHYVELSFQKFGSHVVEKLLKVRE--SSR 463 (536)
T ss_pred --------------------CccccchhhhhhhhcCcch---HHHHHHhhhhHHHHHHHHhhccHHHHHHHhcCc--chh
Confidence 3479999999999886532 333444456789999999999999999999975 244
Q ss_pred HHHHHHHHH--hHHHHhcCCCChHHHHHHHhcCCH----HHHHHHHHHHHHhHhhhhcCCChHHHHHHc
Q 003928 563 HRVVLKLKG--HFGELSVHPSGSFTVERCFTASSL----SLRETIASELSAVRNELSKTKQGPHLIRKL 625 (786)
Q Consensus 563 ~~Li~~L~g--~~~~LA~~k~GS~VVek~~~~~~~----~~Ke~I~~eL~~~~~~L~~s~~Gr~V~~kl 625 (786)
..++..|.+ ++..|+.|+||.|||++.|.++.. ..+..++..+......|+..++|+.+.-+.
T Consensus 464 ~~iV~ell~~~~~~~Ll~D~ygNyViq~AL~vtk~~~~~~~~~~lv~~~~~~~~~lr~~p~~~~~~~~~ 532 (536)
T KOG2049|consen 464 AQIVLELLSCDELDRLLRDPYGNYVIQTALRVTKVKLREDLFGLLVQKLMPRIRLLRNNPGGNIALIKD 532 (536)
T ss_pred hHHHHHHHccccHHHHhhCccchHHHHHHHHHhhhcccchhhHHHHHHHhhhhHHhhcCcccceeeehh
Confidence 778888887 999999999999999999999986 888889999988889999999999876544
No 9
>COG5099 RNA-binding protein of the Puf family, translational repressor [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=4.7e-24 Score=250.57 Aligned_cols=265 Identities=22% Similarity=0.229 Sum_probs=212.3
Q ss_pred hhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcCCCCCccCCCccccchhHhHHHhhcCCchhHHHHHHHhhCCHHHHH
Q 003928 301 LQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYD 380 (786)
Q Consensus 301 L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~d~~gS~vlEk~L~~~~~~~~~ 380 (786)
.+.|++||+.||..|.... .++...+...++ +.+.+|+.|.+|.+|+|++++++.+.++.
T Consensus 446 ~~~Dq~g~r~LQk~Lds~s--~~~~~~~~~e~~------------------d~~~eLs~d~fGNyliQK~fe~~s~~q~~ 505 (777)
T COG5099 446 SCKDQHGSRFLQKLLDSNS--SPEIEVIFNEIL------------------DQLVELSSDYFGNYLIQKLFEYGSEIQKS 505 (777)
T ss_pred ccCCcHHHHHHHHHhcccc--hHHHHHHHHHHh------------------hhhHHHHHhhhcchhhHHHHHhccHHHHH
Confidence 3699999999999999722 233333333222 45778999999999999999999999998
Q ss_pred HHHHHHhHhhHHhhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHhHHHHHhhcCcc-HHHHHHHHHHhhhhhhHHHHH
Q 003928 381 EMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSG-VVAALIAASQRLHTHERKCCE 459 (786)
Q Consensus 381 ~i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~~eL~~~l~~L~~~~~~~-Vv~~Lie~c~r~~~~q~~~i~ 459 (786)
.+.. .+.+++..|+.|+||++|+|++|+.+.++.+...|+++|.|.+..|+.+...+ |+++.++.+..- ..+
T Consensus 506 ~ml~-~~~~~~~~ls~~~~Gtrv~QK~id~~~t~~qi~~lv~~l~~~~~~li~dqngNHviqKci~~~~~~------~~~ 578 (777)
T COG5099 506 IMLS-KSSKHLVSLSVHKYGTRVLQKAIDIVSTDIQISLLVEELRPYCLQLIKDQNGNHVIQKCIEKFNKE------KNQ 578 (777)
T ss_pred HHHH-HhhhhHHHhhccccccHHHHHHHhccCchhhHHHHHHHhhhhhHHHHHhccCCHHHHHHHHhcCcc------ccc
Confidence 7776 45899999999999999999999999988888899999999999999888776 998888754321 122
Q ss_pred HHHHhhccCCCcccchhhhhhhcccccccccccCCCCCcccccccchhHHHHHHhhCCCCCcH-HHHHHHHccCHHHHHH
Q 003928 460 ALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQ-PYVTSITSMEADHVLE 538 (786)
Q Consensus 460 ~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~lL~f~~~~~~-~~v~sLl~l~~~~l~~ 538 (786)
-++..++. .++. +..+.|||+++|+||++.....+ .+++.|+ ..+..
T Consensus 579 fif~~~~~----------~~~~------------------is~~r~Gs~vvq~~le~~~~~~~~~~~~~Ii----~~~~~ 626 (777)
T COG5099 579 FIFDSINE----------NLYD------------------LSTHRYGSRVVQRCLENCNSEDKENLVEEII----SNSKY 626 (777)
T ss_pred hHHHHHHh----------hhHh------------------hhccccccHHHHHHHHhccHhHHHHHHHHHH----HHHHh
Confidence 23333311 1111 23478999999999999876432 4555554 57889
Q ss_pred HhhCCCchHHHHHHHcCCCChHHHHHHHHHHHH-hHHHHhcCCCChHHHHHHHhcCCHHH-HHHHHHHHHHh-------H
Q 003928 539 AAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKG-HFGELSVHPSGSFTVERCFTASSLSL-RETIASELSAV-------R 609 (786)
Q Consensus 539 La~d~~GS~VIq~lL~s~~~~k~r~~Li~~L~g-~~~~LA~~k~GS~VVek~~~~~~~~~-Ke~I~~eL~~~-------~ 609 (786)
|++|++|+||||++|+.+.. ..+++++..+.. ++++|++++|||.|||+|+..+.... |++|+.+|... .
T Consensus 627 L~~dq~GNyvvq~il~~g~~-~~k~~i~~~~l~~~v~elS~~kfaSnvVeK~i~~~~~~~~~~ril~~~~~~~~~~~~~l 705 (777)
T COG5099 627 LSQDQYGNYVVQHILDNGAE-PNKERIIIKLLSKRVVELSTHKFASNVVEKCIKYASDSFKRSRILNELTNRGIEKPGFL 705 (777)
T ss_pred hccCCcchhhhhHHhhcCCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhcccccCChHH
Confidence 99999999999999999974 688888888888 99999999999999999999998877 59999999982 2
Q ss_pred hhhhcCCChHHHHHHc
Q 003928 610 NELSKTKQGPHLIRKL 625 (786)
Q Consensus 610 ~~L~~s~~Gr~V~~kl 625 (786)
..|..+.||+||++..
T Consensus 706 ~~i~~d~y~Nyv~q~~ 721 (777)
T COG5099 706 MLILDDQYANYVIQYL 721 (777)
T ss_pred HHHHHhhhcchHHHHH
Confidence 4578999999999875
No 10
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2.5e-19 Score=197.69 Aligned_cols=312 Identities=15% Similarity=0.173 Sum_probs=229.0
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhccchhhhccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHhhcC
Q 003928 96 DLAKYFAEISNLFESNEVDLEERSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMD 175 (786)
Q Consensus 96 e~~~Yf~~i~e~l~~~~~d~EEr~~~v~nvleEi~Gkel~La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L~~d 175 (786)
++.+-.+++||.|+....+.|+|..+++.++.-+.|+.-.|+.-+..|||||.|+.+++..++..+|+++.+.|+.||.+
T Consensus 129 ~~~qe~kslWEkLR~k~~~ke~R~klv~el~~likg~i~~lv~aHDtSRViQt~Vky~s~~~r~~if~eL~p~~v~l~ks 208 (652)
T KOG2050|consen 129 EISQEAKSLWEKLRRKTTPKEERDKLVSELYKLIKGKISKLVFAHDTSRVIQTCVKYGSEAQREQIFEELLPFFVELAKS 208 (652)
T ss_pred HHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHhcCHHHHHHHHHHHhHHHHHHHHh
Confidence 56677889999999987788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHhHHhhhhhhhhhhHHHHHHHHHHHHHcCchhhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHH
Q 003928 176 RSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQI 255 (786)
Q Consensus 176 ~fGShVlQkLL~~~~~~~~~e~~~~~~ee~l~~i~~~l~~nl~~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~ 255 (786)
+||-|++|++|.+.++.+ ...|+..
T Consensus 209 kY~k~~v~KmLkyGsk~q------------~a~iI~s------------------------------------------- 233 (652)
T KOG2050|consen 209 KYAKFFVQKMLKYGSKAQ------------KAKIINS------------------------------------------- 233 (652)
T ss_pred HHHHHHHHHHHhcCCHHH------------HHHHHHH-------------------------------------------
Confidence 999999999998655321 1111111
Q ss_pred HHHHhcccccccCCCCccCCcchHHHHHHHHHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcC
Q 003928 256 LAERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGS 335 (786)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~F~~~L~~l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~ 335 (786)
T Consensus 234 -------------------------------------------------------------------------------- 233 (652)
T KOG2050|consen 234 -------------------------------------------------------------------------------- 233 (652)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCccCCCccccchhHhHHHhhcCCchhHHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhHHHHHHHhhcCCHH
Q 003928 336 NKDNVVEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQD 415 (786)
Q Consensus 336 ~~~~~~e~~f~~~~~~~~i~~l~~d~~gS~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~~e 415 (786)
|.|++..|++|..|.|||.-+.....+.+
T Consensus 234 ---------------------------------------------------l~Ghv~kLlRH~eaa~Vve~ay~~~A~l~ 262 (652)
T KOG2050|consen 234 ---------------------------------------------------LRGHVVKLLRHREAAYVVEYAYNDFATLE 262 (652)
T ss_pred ---------------------------------------------------HhhhHHHHHhhhHHHHHHHHHHHhhccHH
Confidence 24555555666666666665555433456
Q ss_pred HHHHHHHHHHHhHHHHHhhcCccHHHHHHHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhcccccccccccCCC
Q 003928 416 QMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWN 495 (786)
Q Consensus 416 q~~~i~~eL~~~l~~L~~~~~~~Vv~~Lie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~ 495 (786)
|...|+.|+++...++++....--|..++ ........-+++.|...+.+ +. ++
T Consensus 263 Qr~~li~EfYG~efqlfK~sn~~Tl~kil---~~~pekk~~I~~~l~~~I~~-----------v~---------eK---- 315 (652)
T KOG2050|consen 263 QRQYLIQEFYGDEFQLFKDSNDKTLDKIL---AEAPEKKASILRHLKAIITP-----------VA---------EK---- 315 (652)
T ss_pred HHHHHHHHHhhHHHHHHhccCcccHHHHH---HhChHhHHHHHHHHHHHhHH-----------Hh---------hc----
Confidence 77777777777666676654332232222 22222222233444433311 00 00
Q ss_pred CCcccccccchhHHHH-HHhhCCCCCcHHHHHHHHccCHHHHHHHhhCCCchHHHHHHHcCCCChHHHHHHHHHHHHhHH
Q 003928 496 WPKGIKIQIIGSLILQ-AVFRFPSEFIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKGHFG 574 (786)
Q Consensus 496 ~~~~~~~~~~G~~vlQ-~lL~f~~~~~~~~v~sLl~l~~~~l~~La~d~~GS~VIq~lL~s~~~~k~r~~Li~~L~g~~~ 574 (786)
..-|..|+. .+|+|-.-+...-...++.+..+.+.+|.+++-||+|.-.++..++ ++.|+.||..|+.|+.
T Consensus 316 -------g~v~~tivHk~mlEy~~~ade~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~-aKeRK~IiK~~K~h~~ 387 (652)
T KOG2050|consen 316 -------GSVDHTIVHKLMLEYLTIADEEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHAT-AKERKLIIKNMKEHVE 387 (652)
T ss_pred -------chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCC-HHHHHHHHHHHHHHHH
Confidence 012233333 3335443222233344555555789999999999999998888876 5899999999999999
Q ss_pred HHhcCCCChHHHHHHHhcCC--HHHHHHHHHHHHHhHhhhhcCCChHHHHHHcchh
Q 003928 575 ELSVHPSGSFTVERCFTASS--LSLRETIASELSAVRNELSKTKQGPHLIRKLDID 628 (786)
Q Consensus 575 ~LA~~k~GS~VVek~~~~~~--~~~Ke~I~~eL~~~~~~L~~s~~Gr~V~~kl~l~ 628 (786)
.+|.+.||+.|+-++|++.| ..++..|+.++......|..|+|||.||.-+..+
T Consensus 388 K~A~~~yGh~vlia~ldc~DDT~l~kk~i~~e~~~el~~li~Dk~Grrv~lyll~p 443 (652)
T KOG2050|consen 388 KIANDEYGHLVLIALLDCTDDTKLLKKLIYDELKSELKSLISDKYGRRVILYLLAP 443 (652)
T ss_pred HHHhhccCceehhhhhcccchHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccC
Confidence 99999999999999999997 5789999999999999999999999999866544
No 11
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=5.1e-18 Score=189.40 Aligned_cols=417 Identities=16% Similarity=0.142 Sum_probs=253.2
Q ss_pred HHHHHHhhhHhHhhcCcchhHHHHHHHHHhHHhhhhhhhhhhHHHHHHHHHHHHHcCchhhhccCCcchHHHHHHHHhhC
Q 003928 160 SFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRG 239 (786)
Q Consensus 160 ~~l~~l~~~~~~L~~d~fGShVlQkLL~~~~~~~~~e~~~~~~ee~l~~i~~~l~~nl~~Li~D~~gSHVlR~lL~~lsG 239 (786)
.+|++..|....|+++++||||+|+++..+.. ..+..+...+.+++..+++|+|||||++++|..+.-
T Consensus 92 ~i~ee~~grel~l~tnqi~Sk~le~l~~f~d~------------~ql~~ff~~~~g~lr~i~~~r~gshVle~~L~~~a~ 159 (650)
T KOG2188|consen 92 SIFEEVYGRELDLATNQIGSKVLEDLLGFSDS------------RQLCDFFSALNGVLRSIAQHRFGSHVLESALEKLAA 159 (650)
T ss_pred hHHHHhccceeehhccchhHHHHHHHhccCCc------------hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48888999999999999999999999987653 235567788889999999999999999999987531
Q ss_pred CCCCCchhhcccchHHHHHHhcccccccCCCCccCCcchHHHHHHHHHHHHHHhhhhhHh-hhhcCcCccHHHHHHHhhh
Q 003928 240 APLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRKDLR-TLQTDQYSSLVLQTALRLL 318 (786)
Q Consensus 240 ~~~~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~~~~~~F~~~L~~l~~~ll~~~~~~i~-~L~~d~~gs~VLQ~lLe~~ 318 (786)
.+..... ....-. .......+ -..-++.+.-+.+++- .++. .|+.|.+|++|+.++|.++
T Consensus 160 -~vg~e~~----~~s~de--------a~~~ke~p--~~t~e~~~~~m~nei~----~~~~~~l~~~~~gshv~rt~~l~l 220 (650)
T KOG2188|consen 160 -LVGQEAA----LLSEDE--------AAVEKEGP--FVTCENLLLLMLNEIS----PHVLKTLMELIFGSHVLRTILLLL 220 (650)
T ss_pred -HhCcccc----ccchhh--------hcccccCc--ccccchHHHHHHHHhh----HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1111000 000000 00000000 0111223333333332 3344 8999999999999999998
Q ss_pred cCCCh---HH----HHHHHHHhcCCCCCc---cCCCcccc-----------------chhHhHHHhhcCCchhHHHHHHH
Q 003928 319 VGNDP---EL----LQIISILLGSNKDNV---VEGNFIPM-----------------TVVHDVLNLMKETAYSHLMEVIL 371 (786)
Q Consensus 319 ~~~~~---~l----~~ii~~ll~~~~~~~---~e~~f~~~-----------------~~~~~i~~l~~d~~gS~vlEk~L 371 (786)
.+.-+ .. .+++... +..+.|. ...+|... .-..++..+..|+++|.|+|++|
T Consensus 221 ~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~pqsFp~~l~~~i~~~l~~~~~~s~~~~~~~k~~~vDk~~s~v~q~~i 299 (650)
T KOG2188|consen 221 FSMCPIAESEHKLALRKAAHR-GMDDWDAVTTPPQSFPQRLIVWICTGLSALQDVSESKKRDLKGYEVDKSSSNVLQKAI 299 (650)
T ss_pred ccCcchhhhHHHHHHHHHhhc-cccchhhhhcChhhccHHHHHHHhhhccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 76411 00 1111110 0000010 11122100 01236788899999999999999
Q ss_pred hhCCH----HHHHHHHHHHh---------------HhhHHhhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHhHHHHH
Q 003928 372 EVAPQ----SLYDEMFTKVF---------------RNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELL 432 (786)
Q Consensus 372 ~~~~~----~~~~~i~~~~~---------------~~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~~eL~~~l~~L~ 432 (786)
...-. +.+...+.-.+ .+-+..+..|+.|..++..+++.+. +..+..++..+...+..|.
T Consensus 300 ~l~~~~~~~~~~~~~~~lv~~~~~~~e~d~~~~kE~~~~k~~l~d~tgSrllE~Imeva~-~~~~~lf~~~f~~rl~~La 378 (650)
T KOG2188|consen 300 RLAFDENKNDQFMESPRLVTKFQLFNEKDGLWGKERSFLKELLSDQTGSRLLEVIMEVAS-ESLLSLFYIVFCGRLDELA 378 (650)
T ss_pred HHHhhhhcchhhhhhhhHHHhhhhccccCcccccccHHHHHHHhcCcccHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHH
Confidence 98753 11111111111 1235667789999999999999997 4567666666788999999
Q ss_pred hhcCcc-HHHHHHHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhcccccccccccCCCCCcccccccchhHHHH
Q 003928 433 EMGRSG-VVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQ 511 (786)
Q Consensus 433 ~~~~~~-Vv~~Lie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ 511 (786)
.++.++ +||+|+++.... +.+..+++++.+. +..||........-.. .........+-.-|+|
T Consensus 379 ~~p~aNF~lQrli~h~~~~-----e~v~~v~eeL~P~-------~~~LL~~g~~gVv~sL----ia~~~rl~s~q~~~l~ 442 (650)
T KOG2188|consen 379 VHPIANFPLQRLINHLTSL-----EDVGSVIEELAPK-------LSSLLEQGNSGVVASL----IAASARLGSYQDKMLQ 442 (650)
T ss_pred hCccccchHHHHHHhccCH-----HHHHHHHHHHhHH-------HHHHHHcCCchHhHHH----HHHHHhhchhHHHHHH
Confidence 988776 799999975532 3344444444221 1112211110000000 0000112234456777
Q ss_pred HHhhCCC---CCcHHHHHHHH-ccC-----HHHHHHHhhCCCchHHHHHHHcCCCC--hHHHHHHHHHHHHhHHHHhcCC
Q 003928 512 AVFRFPS---EFIQPYVTSIT-SME-----ADHVLEAAKDAAGARVIEAYLSSKVS--AKQKHRVVLKLKGHFGELSVHP 580 (786)
Q Consensus 512 ~lL~f~~---~~~~~~v~sLl-~l~-----~~~l~~La~d~~GS~VIq~lL~s~~~--~k~r~~Li~~L~g~~~~LA~~k 580 (786)
.|+.... +....++-.++ ++. .+--..-=.|..|+-++|.++....+ .-.-..|+.....++.++++++
T Consensus 443 ~Li~a~~~~~~~~k~il~~lL~~~~~~g~~~~~~~t~~~h~~ga~lle~lv~f~k~~i~~litsll~L~~eqi~e~~~~~ 522 (650)
T KOG2188|consen 443 QLIQAFHAASESKKNILPCLLFSLTLFGCVGEWFLTEKFHQKGAVLLEELVNFSKTHIQTLITSLLSLSEEQILEMSCNG 522 (650)
T ss_pred HHHHHHhcCChhhcchHHHHHHHhhhcccccccccHHHHhhchhHHHHHHHhhchhhhHHHHHHHHhhhHHHHHHHhcCC
Confidence 7765432 21111211211 110 00001111245899999999998743 1223445666678999999999
Q ss_pred CChHHHHHHHhcC--CHHHHHHHHHHHHHhHhhhhcCCChHHHHHHc
Q 003928 581 SGSFTVERCFTAS--SLSLRETIASELSAVRNELSKTKQGPHLIRKL 625 (786)
Q Consensus 581 ~GS~VVek~~~~~--~~~~Ke~I~~eL~~~~~~L~~s~~Gr~V~~kl 625 (786)
+||||||+++... +...|++++..|-.....|.-+.||.+|+-+|
T Consensus 523 ~~ShlIeavL~S~~l~~~~~~kLi~~l~g~~~~La~~~~GSrv~eK~ 569 (650)
T KOG2188|consen 523 VGSHLIEAVLASKDLGEKIKEKLINILDGSFVTLALSTFGSRVFEKC 569 (650)
T ss_pred chHHHHHHHHHhccccHHHHHHHHHHhhccchheeecCcccHHHHHH
Confidence 9999999999995 56889999999999999999999999999988
No 12
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.4e-12 Score=143.05 Aligned_cols=389 Identities=15% Similarity=0.137 Sum_probs=230.1
Q ss_pred HHHHHhhhccchhhhccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHhhcCcchhHHHHHHHHHhHHhhhhhhhhhh
Q 003928 122 CRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSI 201 (786)
Q Consensus 122 v~nvleEi~Gkel~La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L~~d~fGShVlQkLL~~~~~~~~~e~~~~~ 201 (786)
.+++|+|+.|..+.||++.++=++++++|.++++.|+..|+++|.||+..|+.|+-|++|++-++...+...+
T Consensus 191 r~~if~eL~p~~v~l~kskY~k~~v~KmLkyGsk~q~a~iI~sl~Ghv~kLlRH~eaa~Vve~ay~~~A~l~Q------- 263 (652)
T KOG2050|consen 191 REQIFEELLPFFVELAKSKYAKFFVQKMLKYGSKAQKAKIINSLRGHVVKLLRHREAAYVVEYAYNDFATLEQ------- 263 (652)
T ss_pred HHHHHHHHhHHHHHHHHhHHHHHHHHHHHhcCCHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhhccHHH-------
Confidence 4678899999999999999999999999999999999999999999999999999999999999986443211
Q ss_pred HHHHHHHHHHHHHcCchhhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHHHHhcccccccCCCCccCCcchHHH
Q 003928 202 IEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSE 281 (786)
Q Consensus 202 ~ee~l~~i~~~l~~nl~~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~~~~~~F~~ 281 (786)
=..|..++.++...+..|.+ .+++-.+|.-.|. |+..+++
T Consensus 264 ----r~~li~EfYG~efqlfK~sn----~~Tl~kil~~~pe--------kk~~I~~------------------------ 303 (652)
T KOG2050|consen 264 ----RQYLIQEFYGDEFQLFKDSN----DKTLDKILAEAPE--------KKASILR------------------------ 303 (652)
T ss_pred ----HHHHHHHHhhHHHHHHhccC----cccHHHHHHhChH--------hHHHHHH------------------------
Confidence 12355556555555555522 2233333311110 1111111
Q ss_pred HHHHHHHHHHHhhhhhHhhhhcCcCccHHH-HHHHhhhcCCChHH-HHHHHHHhcCCCCCccCCCccccchhHhHHHhhc
Q 003928 282 LSKFLISGILASSRKDLRTLQTDQYSSLVL-QTALRLLVGNDPEL-LQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMK 359 (786)
Q Consensus 282 ~L~~l~~~ll~~~~~~i~~L~~d~~gs~VL-Q~lLe~~~~~~~~l-~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~ 359 (786)
.|..+++.+... ...+.-++ -.+|+.+.-.|++- ..++..+ .+.|+.|+.
T Consensus 304 ~l~~~I~~v~eK----------g~v~~tivHk~mlEy~~~ade~e~~e~l~ll------------------~elv~e~vH 355 (652)
T KOG2050|consen 304 HLKAIITPVAEK----------GSVDHTIVHKLMLEYLTIADEEEKSELLELL------------------KELVPEMVH 355 (652)
T ss_pred HHHHHhHHHhhc----------chhHHHHHHHHHHHHHHhCCHHHHHHHHHHH------------------HHHHHHHhc
Confidence 122222222210 00111111 12233332223221 1223221 146788999
Q ss_pred CCchhHHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhHHHHHHHhhcCCHHHH-HHHHHHHHHhHHHHHhhcCc-
Q 003928 360 ETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQM-ALIWEELGGKFRELLEMGRS- 437 (786)
Q Consensus 360 d~~gS~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~~eq~-~~i~~eL~~~l~~L~~~~~~- 437 (786)
.+-||+|--.||..++++.++.|++. |++++.+++.|.||+.|+-++|++..|...+ ..|++++..++..|+...+.
T Consensus 356 T~dGS~vAm~li~~a~aKeRK~IiK~-~K~h~~K~A~~~yGh~vlia~ldc~DDT~l~kk~i~~e~~~el~~li~Dk~Gr 434 (652)
T KOG2050|consen 356 TRDGSRVAMKLIWHATAKERKLIIKN-MKEHVEKIANDEYGHLVLIALLDCTDDTKLLKKLIYDELKSELKSLISDKYGR 434 (652)
T ss_pred CCchHHHHHHHHhhCCHHHHHHHHHH-HHHHHHHHHhhccCceehhhhhcccchHHHHHHHHHHHHHHHHHHHhccchhh
Confidence 99999999999999999999988884 5999999999999999999999999775544 55889999999999987755
Q ss_pred cHHHHHHHHHHhhhh-hhHHHHHHHHHhhccCC---Cc---c-----cchhhhhhhcccccccccccCCCCCcccccccc
Q 003928 438 GVVAALIAASQRLHT-HERKCCEALAAAVSSTN---VS---P-----RCIVPGILFLESYFSCEDKSNWNWPKGIKIQII 505 (786)
Q Consensus 438 ~Vv~~Lie~c~r~~~-~q~~~i~~L~~al~~~~---e~---~-----~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~ 505 (786)
.|+.-|+.- +-+. .-.+++ .+...+.... .+ + ..|-|.++++...... ..-....
T Consensus 435 rv~lyll~p--~D~~~f~~e~i-e~l~~~d~~k~sKKdp~vRr~eLla~isp~lis~~s~~ae----------eil~e~~ 501 (652)
T KOG2050|consen 435 RVILYLLAP--RDGRYFVPEFI-EVLEELDSNKHSKKDPLVRRIELLAAISPSLISLLSENAE----------EILAEAL 501 (652)
T ss_pred hhhhhhccC--CccccccHHHH-HHHHhcccccccccCHHHHHHHHHHhhhHHHHHHHHHhHH----------HHHHHhh
Confidence 365555542 1111 112333 3333332111 11 1 1244555554321100 0011335
Q ss_pred hhH-HHHHHhhCCC-CCc----HHHHHHHHccC------H--------HHHHHHhhCCCch--H-HHHHHHcCCCCh-HH
Q 003928 506 GSL-ILQAVFRFPS-EFI----QPYVTSITSME------A--------DHVLEAAKDAAGA--R-VIEAYLSSKVSA-KQ 561 (786)
Q Consensus 506 G~~-vlQ~lL~f~~-~~~----~~~v~sLl~l~------~--------~~l~~La~d~~GS--~-VIq~lL~s~~~~-k~ 561 (786)
||. ++..+|.-.. ... +...+..+... + ..-..+...+.|+ + +.+.++..+... ..
T Consensus 502 ~~~~lV~~~l~~~~~~~d~~~~q~~a~a~l~~~~~~~~~~~~p~h~~~~~~~~~il~q~g~w~~~~~k~~~~~~~~g~~~ 581 (652)
T KOG2050|consen 502 KSQVLVEASLGAEDGDKDPDEKQAAAEAALPAFKAIPEEAKKPKHQEEEPAAHLILGQEGAWMHIEKKRILKNNREGEGV 581 (652)
T ss_pred cceeeHHhhhcCcccccChhhHHHHHHHHHHHhccCcccccCCcchhcccchhhHHhccccchhHHHHHHhhhcCCcccc
Confidence 666 5566665443 111 12333333210 0 0112223333232 2 223343333211 11
Q ss_pred HHHHH-HHHHHhHHHHhcCCCChHHHHHHHhcCCHHHHH
Q 003928 562 KHRVV-LKLKGHFGELSVHPSGSFTVERCFTASSLSLRE 599 (786)
Q Consensus 562 r~~Li-~~L~g~~~~LA~~k~GS~VVek~~~~~~~~~Ke 599 (786)
-..|+ ....+++.+++...-||+|+-++++.++..+.+
T Consensus 582 ~k~l~e~l~sk~L~sWa~~nrg~fvL~allE~~~~~v~~ 620 (652)
T KOG2050|consen 582 PKLLLENLSSKNLKSWASVNRGCFVLLALLETCDDQVEE 620 (652)
T ss_pred HHHHHHHhhHHHHHHHHccCcchhhHHHHHHhcCHHhhh
Confidence 12333 345789999999999999999999999976543
No 13
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=98.83 E-value=2.7e-08 Score=114.60 Aligned_cols=330 Identities=15% Similarity=0.183 Sum_probs=211.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhhhccchhhhccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHhhcCcchhHHHHHH
Q 003928 106 NLFESNEVDLEERSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETA 185 (786)
Q Consensus 106 e~l~~~~~d~EEr~~~v~nvleEi~Gkel~La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L~~d~fGShVlQkL 185 (786)
.-+..+..+.+|-..+.-..++|. -++..|-.|.-|+|++++.+++--...++.....++..+..|.||..++|++
T Consensus 525 ksedsn~~S~pEied~ai~mLDe~----~elsSdylGNtVvqkfFe~sS~~ik~aml~r~s~ylts~gvHknGtw~~qk~ 600 (1007)
T KOG4574|consen 525 KSEDSNRLSAPEIEDLAILMLDEL----PELSSDYLGNTVVQKFFELSSDIIKDAMLRRGSKYLTSMGVHKNGTWACQKI 600 (1007)
T ss_pred hhcccCcccchhHHHHHHHHhccC----CcchhhhhcchhhHHHHhhccHHHHHHHHhhhhhhhhhccccccchHHHHHH
Confidence 334444445445555554455554 4788999999999999999999888889999999999999999999999999
Q ss_pred HHHhHHhhhhhhhhhhHHHHHHHHHHHHHcCchhhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHHHHhccccc
Q 003928 186 LKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDAS 265 (786)
Q Consensus 186 L~~~~~~~~~e~~~~~~ee~l~~i~~~l~~nl~~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a~~~~~~~~ 265 (786)
++.+... ..+..++..+.+....++.|+||+||+|.+|.. |.+
T Consensus 601 ik~a~te-----------~qik~iv~g~dpyc~~l~~dqfgnyvaqd~LkF--~fp------------------------ 643 (1007)
T KOG4574|consen 601 IKMAFTE-----------RQIKLIVRGVDPYCTPLLNDQFGNYVAQDSLKF--GFP------------------------ 643 (1007)
T ss_pred HHHhhch-----------hhhheeeeccCcchhhHHHHhhcceeeeeehhc--cCc------------------------
Confidence 9987542 234445555556677899999999999988843 222
Q ss_pred ccCCCCccCCcchHHHHHHHHHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcCCCCCccCCCc
Q 003928 266 QSNRNNLSYHHPVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNF 345 (786)
Q Consensus 266 ~~~~~~~~~~~~~F~~~L~~l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~~~~~~~e~~f 345 (786)
-..|. + +.++ .+++++++.-||+.-+..+|+.+.-.-+ ...+....+
T Consensus 644 ----------~nsFV--f----E~v~----s~~~~ivQsrfGsravrAcle~lNa~~e-~qsl~~~s~------------ 690 (1007)
T KOG4574|consen 644 ----------WNSFV--F----ESVF----SHFWDIVQSRFGSRAVRACLEALNANTE-DQSLVRESC------------ 690 (1007)
T ss_pred ----------cchHH--H----HHHH----HHHHHHHHHhhhhHHHHHHHHHhccCch-hhhhhhhhh------------
Confidence 02232 1 2222 3577888889999999999998743211 111111000
Q ss_pred cccchhHhHHHhhcCCchhHHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHH
Q 003928 346 IPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELG 425 (786)
Q Consensus 346 ~~~~~~~~i~~l~~d~~gS~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~~eL~ 425 (786)
......-+..+-.|-.+|-..|..+...-+..+....+.+++.+||.|.-|+-+|+++++.+.+++-+ +.+.
T Consensus 691 ----iIs~ss~latnsng~llvtw~lDns~~~nrh~~l~~~lt~el~~lC~h~Lgsttv~Kl~n~~qepvs~----ekii 762 (1007)
T KOG4574|consen 691 ----IISKSSYLATNSNGLLLVTWLLDNSSLPNRHTILAHGLTKELVMLCFHKLGSTTVLKLLNLRQEPVSR----EKII 762 (1007)
T ss_pred ----hhhchhhhhhcCccceeeeeecccccccchhhHHhhhhhhccchhhhhhccchhhhhhhhcCCChHHH----HHHH
Confidence 00001125566777777777887766544444444344589999999999999999999999887634 4444
Q ss_pred HhHHHHHhhcCccHHHHHHHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhcccccccccccCCCCCcccccccc
Q 003928 426 GKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQII 505 (786)
Q Consensus 426 ~~l~~L~~~~~~~Vv~~Lie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~ 505 (786)
++|..+..+.. +++-.+.... ...+-.++ .++.. ++.. ..-....
T Consensus 763 ~hlf~~~n~kd-~~lt~Vl~~~---------------------~~gpmfii-kvi~~-p~ie-----------l~f~dQf 807 (1007)
T KOG4574|consen 763 EHLFHLRNFKD-SALTEVLTEA---------------------NYGPMFII-KVITK-PTIE-----------LAFRDQF 807 (1007)
T ss_pred HHHhhcccccc-chhhhhhhhh---------------------ccccceee-eeecc-ccch-----------HHHHHHH
Confidence 45444432221 2211111100 00010111 11111 1100 0011346
Q ss_pred hhHHHHHHhhCCCCCcHHHHHHHHccCHHHHHHHhhCCCchHHHHHHHcCCC
Q 003928 506 GSLILQAVFRFPSEFIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKV 557 (786)
Q Consensus 506 G~~vlQ~lL~f~~~~~~~~v~sLl~l~~~~l~~La~d~~GS~VIq~lL~s~~ 557 (786)
+-.|.|.|+.++...+. .+..|+ +++.-++...+|++-+|+++.+..
T Consensus 808 ~kvvrq~il~~~a~~na-rv~~Ll----eevgliSasksgs~s~q~~~sss~ 854 (1007)
T KOG4574|consen 808 IKVVRQVILNSPAVSNA-RVQRLL----EEVGLISASKSGSQSIQMHISSSK 854 (1007)
T ss_pred HHHHHHHHHhcCCccHH-HHHHHH----HHHhhhccccchhHHHHhhhccCC
Confidence 77888999999887543 346776 478889999999999999998874
No 14
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=97.83 E-value=1.7e-05 Score=57.47 Aligned_cols=34 Identities=32% Similarity=0.583 Sum_probs=28.8
Q ss_pred HHHhHHHHhcCCCChHHHHHHHhcCCHHHHHHHH
Q 003928 569 LKGHFGELSVHPSGSFTVERCFTASSLSLRETIA 602 (786)
Q Consensus 569 L~g~~~~LA~~k~GS~VVek~~~~~~~~~Ke~I~ 602 (786)
+.+++.+|++|+||||||++||+.++..+++.|+
T Consensus 2 i~~~~~~l~~d~~Gn~VvQk~le~~~~~~~~~il 35 (35)
T PF00806_consen 2 IKGNLVELSKDQYGNYVVQKCLEHASPEQRQLIL 35 (35)
T ss_dssp HTTTHHHHHTSTTHHHHHHHHHHHSSHHHHHHHH
T ss_pred hHHHHHHHHhccccCHHHHHHHHHCCHHHHHhhC
Confidence 5788899999999999999999988888877664
No 15
>PF00806 PUF: Pumilio-family RNA binding repeat; InterPro: IPR001313 The drosophila pumilio gene codes for an unusual protein that binds through the Puf domain that usually occurs as a tandem repeat of eight domains. The FBF-2 protein of Caenorhabditis elegans also has a Puf domain. Both proteins function as translational repressors in early embryonic development by binding sequences in the 3' UTR of target mRNAs [, ]. The same type of repetitive domain has been found in in a number of other proteins from all eukaryotic kingdoms. The Puf proteins characterised to date have been reported to bind to 3'-untranslated region (UTR) sequences encompassing a so-called UGUR tetranucleotide motif and thereby to repress gene expression by affecting mRNA translation or stability. In Saccharomyces cerevisiae (Baker's yeast), five proteins, termed Puf1p to Puf5p, bear six to eight Puf repeats []. Puf3p binds nearly exclusively to cytoplasmic mRNAs that encode mitochondrial proteins; Puf1p and Puf2p interact preferentially with mRNAs encoding membrane-associated proteins; Puf4p preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors; and Puf5p is associated with mRNAs encoding chromatin modifiers and components of the spindle pole body. This suggests the existence of an extensive network of RNA-protein interactions that coordinate the post-transcriptional fate of large sets of cytotopically and functionally related RNAs through each stage of its lifecycle.; GO: 0003723 RNA binding; PDB: 3BX2_A 4DZS_B 3BX3_B 3BWT_A 3GVT_B 3GVO_A 1IB2_A 3Q0N_A 2YJY_A 1M8Z_A ....
Probab=97.78 E-value=2.8e-05 Score=56.27 Aligned_cols=33 Identities=36% Similarity=0.583 Sum_probs=26.5
Q ss_pred hHhhHHhhhcCcchhHHHHHHHhhcCCHHHHHHH
Q 003928 387 FRNSLFDLSSHHCANFVVQALVSHARDQDQMALI 420 (786)
Q Consensus 387 ~~~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i 420 (786)
+.+++.+|+.|+|||||||++|+.++ +++...|
T Consensus 2 i~~~~~~l~~d~~Gn~VvQk~le~~~-~~~~~~i 34 (35)
T PF00806_consen 2 IKGNLVELSKDQYGNYVVQKCLEHAS-PEQRQLI 34 (35)
T ss_dssp HTTTHHHHHTSTTHHHHHHHHHHHSS-HHHHHHH
T ss_pred hHHHHHHHHhccccCHHHHHHHHHCC-HHHHHhh
Confidence 35788899999999999999999965 5555554
No 16
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=97.73 E-value=4.5e-05 Score=88.75 Aligned_cols=215 Identities=17% Similarity=0.159 Sum_probs=141.1
Q ss_pred hHHHhhcCCchhHHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHhHHHHH
Q 003928 353 DVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELL 432 (786)
Q Consensus 353 ~i~~l~~d~~gS~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~~eL~~~l~~L~ 432 (786)
++.++..|=.|.-|+|++++.++..+++.+..+ ....+..+..|.||+++.|++|+++-++.|...|+.-+.|.-..++
T Consensus 547 e~~elsSdylGNtVvqkfFe~sS~~ik~aml~r-~s~ylts~gvHknGtw~~qk~ik~a~te~qik~iv~g~dpyc~~l~ 625 (1007)
T KOG4574|consen 547 ELPELSSDYLGNTVVQKFFELSSDIIKDAMLRR-GSKYLTSMGVHKNGTWACQKIIKMAFTERQIKLIVRGVDPYCTPLL 625 (1007)
T ss_pred cCCcchhhhhcchhhHHHHhhccHHHHHHHHhh-hhhhhhhccccccchHHHHHHHHHhhchhhhheeeeccCcchhhHH
Confidence 344566667788899999999999888766554 4678899999999999999999999887788878777766555555
Q ss_pred hhcCc-cHHHHHHHHHHhhhhhhHHHH-HHHHHhhccCCCcccchhhhhhhcccccccccccCCCCCcccccccchhHHH
Q 003928 433 EMGRS-GVVAALIAASQRLHTHERKCC-EALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLIL 510 (786)
Q Consensus 433 ~~~~~-~Vv~~Lie~c~r~~~~q~~~i-~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~G~~vl 510 (786)
..... .|++. |.+++-.=..++ +.++..++. | .-+.+|++-+
T Consensus 626 ~dqfgnyvaqd----~LkF~fp~nsFVfE~v~s~~~~-------i-------------------------vQsrfGsrav 669 (1007)
T KOG4574|consen 626 NDQFGNYVAQD----SLKFGFPWNSFVFESVFSHFWD-------I-------------------------VQSRFGSRAV 669 (1007)
T ss_pred HHhhcceeeee----ehhccCccchHHHHHHHHHHHH-------H-------------------------HHHhhhhHHH
Confidence 44433 23332 222221000111 222222210 0 0124677777
Q ss_pred HHHhhCCCC--CcHHHHHHHHccCHHHHHHHhhCCCchHHHHHHHcCCCChHHHHH-HHHHHHHhHHHHhcCCCChHHHH
Q 003928 511 QAVFRFPSE--FIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHR-VVLKLKGHFGELSVHPSGSFTVE 587 (786)
Q Consensus 511 Q~lL~f~~~--~~~~~v~sLl~l~~~~l~~La~d~~GS~VIq~lL~s~~~~k~r~~-Li~~L~g~~~~LA~~k~GS~VVe 587 (786)
-++++...- ..+.++...+.. ...-.++.+..|-+.|..+|+...- ..++. ++..+-++++.||+|+-|+-+|.
T Consensus 670 rAcle~lNa~~e~qsl~~~s~iI--s~ss~latnsng~llvtw~lDns~~-~nrh~~l~~~lt~el~~lC~h~Lgsttv~ 746 (1007)
T KOG4574|consen 670 RACLEALNANTEDQSLVRESCII--SKSSYLATNSNGLLLVTWLLDNSSL-PNRHTILAHGLTKELVMLCFHKLGSTTVL 746 (1007)
T ss_pred HHHHHHhccCchhhhhhhhhhhh--hchhhhhhcCccceeeeeecccccc-cchhhHHhhhhhhccchhhhhhccchhhh
Confidence 777665432 122222222211 1123577888888888888888752 23443 56667799999999999999999
Q ss_pred HHHhcCCHHH-HHHHHHHHHH
Q 003928 588 RCFTASSLSL-RETIASELSA 607 (786)
Q Consensus 588 k~~~~~~~~~-Ke~I~~eL~~ 607 (786)
++++.....+ |++|++.|..
T Consensus 747 Kl~n~~qepvs~ekii~hlf~ 767 (1007)
T KOG4574|consen 747 KLLNLRQEPVSREKIIEHLFH 767 (1007)
T ss_pred hhhhcCCChHHHHHHHHHHhh
Confidence 9999986555 9999999984
No 17
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.41 E-value=0.00015 Score=52.11 Aligned_cols=34 Identities=38% Similarity=0.461 Sum_probs=28.5
Q ss_pred HHHhHHHHhcCCCChHHHHHHHhcCCHHHHHHHH
Q 003928 569 LKGHFGELSVHPSGSFTVERCFTASSLSLRETIA 602 (786)
Q Consensus 569 L~g~~~~LA~~k~GS~VVek~~~~~~~~~Ke~I~ 602 (786)
+.+++.+|+.|+||||||+++++.++..+++.|+
T Consensus 2 ~~~~~~~l~~~~~g~~viqk~l~~~~~~~~~~i~ 35 (36)
T smart00025 2 IKGHLLELSKDQYGNRVVQKLLEHASESQREQII 35 (36)
T ss_pred chHHHHHHHhcchhhHHHHHHHHHCCHHHHHHhh
Confidence 4678889999999999999999988888777764
No 18
>smart00025 Pumilio Pumilio-like repeats. Pumilio-like repeats that bind RNA.
Probab=97.19 E-value=0.00034 Score=50.24 Aligned_cols=33 Identities=36% Similarity=0.488 Sum_probs=24.9
Q ss_pred HhhHHhhhcCcchhHHHHHHHhhcCCHHHHHHHH
Q 003928 388 RNSLFDLSSHHCANFVVQALVSHARDQDQMALIW 421 (786)
Q Consensus 388 ~~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~ 421 (786)
.+++.+|+.|+|||||||++|+.++. .+...|+
T Consensus 3 ~~~~~~l~~~~~g~~viqk~l~~~~~-~~~~~i~ 35 (36)
T smart00025 3 KGHLLELSKDQYGNRVVQKLLEHASE-SQREQII 35 (36)
T ss_pred hHHHHHHHhcchhhHHHHHHHHHCCH-HHHHHhh
Confidence 56788888899999999999888864 3455443
No 19
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=92.31 E-value=0.54 Score=45.75 Aligned_cols=88 Identities=11% Similarity=0.155 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCC-hHHHHHHHHHhcCCCCCccCCCccccchhHhHHH
Q 003928 278 VFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGND-PELLQIISILLGSNKDNVVEGNFIPMTVVHDVLN 356 (786)
Q Consensus 278 ~F~~~L~~l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~-~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~ 356 (786)
...+++..+...|+.+..++..+|+.+..||.||..+|....++. +.+..|...+.+.......+++ ..
T Consensus 46 Rr~ELl~~~sp~Ll~~i~~~~~~ll~~~~g~~~i~eiL~~~~gdk~~a~~Aia~~~~~~~~~~~~~~e----------~H 115 (148)
T PF08144_consen 46 RRKELLEAISPPLLEAIAENAEELLSSSFGCQFITEILLSATGDKSAALEAIASLAAEPLFPGDIDEE----------YH 115 (148)
T ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHhcCcccHHHHHHHhccCccHHHHHHHHHHHHhhccCCCCCcCc----------cc
Confidence 355677777777777766789999999999999999998876543 2334454443321111111111 24
Q ss_pred hhcCCchhHHHHHHHhhCC
Q 003928 357 LMKETAYSHLMEVILEVAP 375 (786)
Q Consensus 357 l~~d~~gS~vlEk~L~~~~ 375 (786)
++.+|+|++++-++|+...
T Consensus 116 ~i~~p~~~r~lK~Liq~~~ 134 (148)
T PF08144_consen 116 LIEHPFGHRMLKKLIQGDK 134 (148)
T ss_pred hhcCchHHHHHHHHHHCCC
Confidence 6789999999998887664
No 20
>PF08144 CPL: CPL (NUC119) domain; InterPro: IPR012959 This C-terminal domain is found in Penguin-like proteins (CPL) and is associated with Pumilio like repeats [].; GO: 0003723 RNA binding
Probab=70.00 E-value=13 Score=36.17 Aligned_cols=61 Identities=18% Similarity=0.151 Sum_probs=36.9
Q ss_pred HHHHHHhHHHHhcCCCChHHHHHHHhcCCH---HHHHHHHHHHHHh--------HhhhhcCCChHHHHHHcc
Q 003928 566 VLKLKGHFGELSVHPSGSFTVERCFTASSL---SLRETIASELSAV--------RNELSKTKQGPHLIRKLD 626 (786)
Q Consensus 566 i~~L~g~~~~LA~~k~GS~VVek~~~~~~~---~~Ke~I~~eL~~~--------~~~L~~s~~Gr~V~~kl~ 626 (786)
+..+..+..+|..+++|+.||..++..++. ..-++|+.-+... +..+..+++|.+++++|-
T Consensus 59 l~~i~~~~~~ll~~~~g~~~i~eiL~~~~gdk~~a~~Aia~~~~~~~~~~~~~~e~H~i~~p~~~r~lK~Li 130 (148)
T PF08144_consen 59 LEAIAENAEELLSSSFGCQFITEILLSATGDKSAALEAIASLAAEPLFPGDIDEEYHLIEHPFGHRMLKKLI 130 (148)
T ss_pred HHHHHHhHHHHHhcCcccHHHHHHHhccCccHHHHHHHHHHHHhhccCCCCCcCccchhcCchHHHHHHHHH
Confidence 333445556777777777776666666532 1122444444432 345779999999998773
No 21
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.05 E-value=1e+03 Score=29.71 Aligned_cols=100 Identities=12% Similarity=0.191 Sum_probs=52.8
Q ss_pred cCCCCCH-HHHHHHHHHHHHHhcCC-------------------------CCHHHH----HHHHHHHHhhhccchhhhcc
Q 003928 89 VRKQVDP-DLAKYFAEISNLFESNE-------------------------VDLEER----SVLCRNALEETRGKELELAT 138 (786)
Q Consensus 89 ~r~~lD~-e~~~Yf~~i~e~l~~~~-------------------------~d~EEr----~~~v~nvleEi~Gkel~La~ 138 (786)
.|+++.+ ....||.++.+.++.+. +..++- ..++.|.|+...--+- +-
T Consensus 487 FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~~--~E 564 (960)
T KOG1992|consen 487 FRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPGK--AE 564 (960)
T ss_pred ecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCcc--cc
Confidence 3567754 45788888877765421 133332 3445566644321111 56
Q ss_pred CCchhHHHHHHhcCCCHHH---HHHHHHHHhhhHhHhhcCcchhHHHHHHHHHhH
Q 003928 139 DYIISHTLQTLLEGCDVDH---LCSFLRGCAKVFPAIAMDRSGSHVAETALKSLA 190 (786)
Q Consensus 139 dq~gSrvLEkLl~~~~~eq---l~~~l~~l~~~~~~L~~d~fGShVlQkLL~~~~ 190 (786)
|++-.+.+.+.|....+.. .-.++..+..-+..++.++--.+.=-=+|+.+.
T Consensus 565 neylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~ 619 (960)
T KOG1992|consen 565 NEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSKNPSNPQFNHYLFESIG 619 (960)
T ss_pred cHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 7777778887777765532 223333344444455555544444444444443
No 22
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.67 E-value=1.1e+03 Score=29.42 Aligned_cols=116 Identities=15% Similarity=0.245 Sum_probs=63.8
Q ss_pred chHHHHHHHHHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCC-ChHHHHHHHHHhcCCCCCccCCCccccchhHhHH
Q 003928 277 PVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGN-DPELLQIISILLGSNKDNVVEGNFIPMTVVHDVL 355 (786)
Q Consensus 277 ~~F~~~L~~l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~-~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~ 355 (786)
..|.+.|-.....++. +++.++. ||+=-++-.+++...+. .+.++.+++.++ .++.++. .++|
T Consensus 634 s~~e~aL~p~fq~Il~---eDI~Efi--PYvfQlla~lve~~~~~ip~~~~~l~~~lL---sp~lW~r-------~gNi- 697 (960)
T KOG1992|consen 634 SSLEEALFPVFQTILS---EDIQEFI--PYVFQLLAVLVEHSSGTIPDSYSPLFPPLL---SPNLWKR-------SGNI- 697 (960)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHH--HHHHHHHHHHHHhcCCCCchhHHHHHHHhc---CHHHHhh-------cCCc-
Confidence 3455555544455543 4566665 33333333445555442 234566666554 2222111 1233
Q ss_pred HhhcCCchhHHHHHHHhhCCHHHH--HH--HHHHHhHhhHHhhhcCcchhHHHHHHHhhcCC
Q 003928 356 NLMKETAYSHLMEVILEVAPQSLY--DE--MFTKVFRNSLFDLSSHHCANFVVQALVSHARD 413 (786)
Q Consensus 356 ~l~~d~~gS~vlEk~L~~~~~~~~--~~--i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~ 413 (786)
|.--|+++.+|+.++..+. +. ..-.+|..-+..=+.|.+|-|.+++++++...
T Consensus 698 -----palvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~~ 754 (960)
T KOG1992|consen 698 -----PALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPP 754 (960)
T ss_pred -----HHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCCH
Confidence 3345899999999886654 11 11113333344455899999999999999864
No 23
>cd01068 sensor_globin Globin domain present in Globin-Coupled-Sensors (GCS). These domains detect changes in intracellular concentrations of oxygen, carbon monoxyde, or nitrous oxide, which result in aerotaxis and/or gene regulation. One subgroup, the HemATs, are aerotactic heme sensors combining a globin with an MCP signaling domain, others function as gene regulators, by direct combination with DNA-binding domains, with domains modulating 2nd messengers, or with domains interacting with transcription factors or regulators.
Probab=30.52 E-value=3.9e+02 Score=25.15 Aligned_cols=82 Identities=10% Similarity=0.048 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhccchhhhccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHh
Q 003928 93 VDPDLAKYFAEISNLFESNEVDLEERSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAI 172 (786)
Q Consensus 93 lD~e~~~Yf~~i~e~l~~~~~d~EEr~~~v~nvleEi~Gkel~La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L 172 (786)
++++..++.+++...++.. ...|++.+|+.+. .++....+++. +..+..+-.....++..|
T Consensus 12 ~~~~d~~~l~~~~~~~~~~------~~~i~~~FY~~l~-------~~p~~~~~~~~------~~~~~~l~~~~~~~~~~l 72 (147)
T cd01068 12 LDEDDLSLLKALRPVIEAN------ADELVDRFYDHLR-------RTPETAAFLGD------ESVVERLKSTQRRHWVEL 72 (147)
T ss_pred CCHHHHHHHHHhHHHHHHH------HHHHHHHHHHHHh-------cChHHHHHhCC------chHHHHHHHHHHHHHHHH
Confidence 8999999999999998776 6788888887654 45666655543 334556666677899999
Q ss_pred hcCcchhHHHHHHHHHhHHhh
Q 003928 173 AMDRSGSHVAETALKSLAMHL 193 (786)
Q Consensus 173 ~~d~fGShVlQkLL~~~~~~~ 193 (786)
...+++...++........+.
T Consensus 73 ~~~~~d~~y~~~~~~iG~~H~ 93 (147)
T cd01068 73 FSGVYDEAYIAQRVRIGEVHA 93 (147)
T ss_pred hCCCCCHHHHHHHHHHHHHHH
Confidence 999999888888776655443
No 24
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=30.18 E-value=9e+02 Score=27.88 Aligned_cols=73 Identities=15% Similarity=0.169 Sum_probs=33.5
Q ss_pred HHHHHHHhhhHhHhhcCcchhHHHHHHHHHhHHhhhh-----hhhhhhHHHHHHHHH-HHHHcCchhhhccCCcchHHHH
Q 003928 159 CSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQD-----EHAHSIIEETLKSIC-KVIVANPVDVMCNCYGSHVLRS 232 (786)
Q Consensus 159 ~~~l~~l~~~~~~L~~d~fGShVlQkLL~~~~~~~~~-----e~~~~~~ee~l~~i~-~~l~~nl~~Li~D~~gSHVlR~ 232 (786)
..+++.+..-+..+|.+|-=-+.-.-+|++++..++. .+....+|+.+.... ..|..++.++ --+|+|-
T Consensus 66 ~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF-----~PYvfQI 140 (435)
T PF03378_consen 66 VEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEF-----IPYVFQI 140 (435)
T ss_dssp HHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTT-----HHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH
Confidence 3445555555556666655555555555555544332 122345666555443 3444555543 4566665
Q ss_pred HHHH
Q 003928 233 LLCL 236 (786)
Q Consensus 233 lL~~ 236 (786)
+-.+
T Consensus 141 la~L 144 (435)
T PF03378_consen 141 LAQL 144 (435)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 25
>TIGR01589 A_thal_3526 uncharacterized plant-specific domain TIGR01589. This model represents an uncharacterized plant-specific domain 57 residues in length. It is found toward the N-terminus of most proteins that contain it. Examples include at least 10 proteins from Arabidopsis thaliana and at least one from Oryza sativa.
Probab=30.11 E-value=80 Score=25.65 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhcc
Q 003928 439 VVAALIAASQRLHTHERKCCEALAAAVSS 467 (786)
Q Consensus 439 Vv~~Lie~c~r~~~~q~~~i~~L~~al~~ 467 (786)
.|+.|+|.|..+.-...+++..|.+....
T Consensus 3 ~Vq~lIE~Cl~~yMsk~E~v~~L~~~a~I 31 (57)
T TIGR01589 3 LVQNRIETCIQGYMSKEETVSFLFENAGI 31 (57)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHcCC
Confidence 57899999999988888999998887644
No 26
>PF09713 A_thal_3526: Plant protein 1589 of unknown function (A_thal_3526); InterPro: IPR006476 This plant-specific family of proteins are defined by an uncharacterised region 57 residues in length. It is found toward the N terminus of most proteins that contain it. Examples include at least several proteins from Arabidopsis thaliana (Mouse-ear cress) and Oryza sativa (Rice). The function of the proteins are unknown.
Probab=28.10 E-value=58 Score=26.16 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHhhcc
Q 003928 440 VAALIAASQRLHTHERKCCEALAAAVSS 467 (786)
Q Consensus 440 v~~Lie~c~r~~~~q~~~i~~L~~al~~ 467 (786)
|+.|||.|..+.-.+.+++.+|.+....
T Consensus 1 Vq~lIErCl~~yMsk~E~v~~L~~~a~I 28 (54)
T PF09713_consen 1 VQNLIERCLQLYMSKEECVRALQKQANI 28 (54)
T ss_pred CchHHHHHHHHcCCHHHHHHHHHHHcCC
Confidence 4779999999988889999998876543
No 27
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=26.65 E-value=1.4e+02 Score=28.35 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=36.9
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhH-HHHHHHhhc
Q 003928 365 HLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANF-VVQALVSHA 411 (786)
Q Consensus 365 ~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNy-VVQklLe~~ 411 (786)
.+++.|++.|...+..++-.+-|...|..+..+++..- |-+++++..
T Consensus 59 ~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li 106 (133)
T smart00288 59 TLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELI 106 (133)
T ss_pred HHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 57899999999988888877767788889998888766 556666554
No 28
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=22.94 E-value=1.8e+02 Score=28.11 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=35.0
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhHHHHHHHhhc
Q 003928 365 HLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHA 411 (786)
Q Consensus 365 ~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNyVVQklLe~~ 411 (786)
.|++.|++.|...+..++..+-|.+.|..|+.+..-.-|.+++++..
T Consensus 63 ~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li 109 (142)
T cd03569 63 LLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELI 109 (142)
T ss_pred HHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHH
Confidence 48899999999988888887777788888887654444555665544
No 29
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=20.17 E-value=1.3e+02 Score=37.52 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHhhhccc------------hhhhccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHhh
Q 003928 116 EERSVLCRNALEETRGK------------ELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIA 173 (786)
Q Consensus 116 EEr~~~v~nvleEi~Gk------------el~La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L~ 173 (786)
+++.......+++++.. .+.+.+-.-|=++|-++|.+.+.+|...|+..|..|+..|-
T Consensus 548 ~~~~~~~~~l~~~L~~~~~~~~~~~~~~~fi~~ls~~KGkkll~R~~~~l~~~q~~~il~~i~~~l~~l~ 617 (808)
T PF09770_consen 548 EKRQALVEKLWESLKVMEPIGDSSSEPHPFISILSVRKGKKLLPRIFPFLSQEQRLTILTMIFRHLDQLD 617 (808)
T ss_dssp HHHHHHHHHHHHHHHT--TTSSS---THHHHHHTTSHHHHHHHHHHGGGS-HHHHHHHHHHHHHTH----
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCCcceEEEeeCChheeHHhhhhhCChhHHHHHHHHHHHHhhhhc
Confidence 45667778888888763 45678888899999999999999999999999988884443
No 30
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=20.11 E-value=1.3e+03 Score=28.78 Aligned_cols=48 Identities=10% Similarity=0.190 Sum_probs=40.9
Q ss_pred HHhhcCCchhHHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhHH
Q 003928 355 LNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFV 403 (786)
Q Consensus 355 ~~l~~d~~gS~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNyV 403 (786)
++.+++-++-+-++-||++--...|..+++ .++.||..++.|.+.++-
T Consensus 172 lE~lY~~ia~~aFqFCLkYqRktEFRrLCe-~LR~HL~~i~k~~nq~~~ 219 (988)
T KOG2072|consen 172 LEALYHDIARKAFQFCLKYQRKTEFRRLCE-LLRMHLDNINKHQNQSTR 219 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHHhhccCcC
Confidence 346667788889999999999999999998 679999999999988773
Done!