Query 003928
Match_columns 786
No_of_seqs 248 out of 1266
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 08:33:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bwt_A Protein PUF4; pumilio, 100.0 3.9E-42 1.3E-46 376.0 23.0 321 121-626 3-332 (333)
2 3gvo_A Pumilio 2, pumilio homo 100.0 3.1E-40 1E-44 363.7 28.7 217 126-421 21-237 (351)
3 3k49_A MRNA-binding protein PU 100.0 3.3E-40 1.1E-44 365.8 19.8 334 104-589 7-357 (369)
4 3k49_A MRNA-binding protein PU 100.0 7.6E-38 2.6E-42 346.9 19.8 336 141-625 3-357 (369)
5 3v71_A PUF (pumilio/FBF) domai 100.0 2.7E-35 9.3E-40 327.1 25.4 328 125-625 12-378 (382)
6 3k62_A FEM-3 mRNA-binding fact 100.0 8.3E-35 2.9E-39 325.5 28.0 325 130-626 28-400 (412)
7 3gvo_A Pumilio 2, pumilio homo 100.0 7.9E-35 2.7E-39 320.5 26.2 294 114-592 49-342 (351)
8 3k62_A FEM-3 mRNA-binding fact 100.0 4.6E-34 1.6E-38 319.5 25.9 285 166-626 28-344 (412)
9 3bwt_A Protein PUF4; pumilio, 100.0 2.5E-33 8.6E-38 306.3 23.5 277 161-625 7-291 (333)
10 3v71_A PUF (pumilio/FBF) domai 100.0 3.5E-32 1.2E-36 302.1 21.6 281 296-626 20-324 (382)
11 2ilr_A Protein FACE, fanconi a 31.5 3.4E+02 0.012 27.7 11.3 44 546-589 179-225 (264)
12 3b2a_A TON_1937, putative unch 28.9 4.7E+02 0.016 26.5 12.4 108 285-433 11-125 (265)
13 2xes_A Protein PAT1 homolog 1; 23.5 2E+02 0.007 29.0 8.1 116 116-236 45-176 (248)
14 3rfi_A Asp; PSI, saposin, hydr 21.4 57 0.0019 28.5 3.0 74 138-211 15-105 (108)
No 1
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=3.9e-42 Score=376.02 Aligned_cols=321 Identities=15% Similarity=0.188 Sum_probs=252.3
Q ss_pred HHHHHHhhhccchhhhccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHhhcCcchhHHHHHHHHHhHHhhhhhhhhh
Q 003928 121 LCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHS 200 (786)
Q Consensus 121 ~v~nvleEi~Gkel~La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L~~d~fGShVlQkLL~~~~~~~~~e~~~~ 200 (786)
|.+++++++.|++++|++||+|||+||++|+.++++++..+|+++.+++..||+|+|||||+|++|+.++...
T Consensus 3 ~~~~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~------- 75 (333)
T 3bwt_A 3 FADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQ------- 75 (333)
T ss_dssp TTTCCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHH-------
T ss_pred cccCcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHH-------
Confidence 4567899999999999999999999999999999999999999999999999999999999999999887532
Q ss_pred hHHHHHHHHHHHHHcCchhhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHHHHhcccccccCCCCccCCcchHH
Q 003928 201 IIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFS 280 (786)
Q Consensus 201 ~~ee~l~~i~~~l~~nl~~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~~~~~~F~ 280 (786)
...|.+.+.+++.+|++|+|||||||++++.+++..
T Consensus 76 -----~~~i~~~~~~~~~~l~~~~~G~rviQ~~l~~~~~~~--------------------------------------- 111 (333)
T 3bwt_A 76 -----RIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDE--------------------------------------- 111 (333)
T ss_dssp -----HHHHHHHHGGGHHHHHHSTTHHHHHHHHHHHCCSHH---------------------------------------
T ss_pred -----HHHHHHHHHhHHHHHHhcccccHHHHHHHHhcCcHH---------------------------------------
Confidence 335667888999999999999999999998763210
Q ss_pred HHHHHHHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcCCCCCccCCCccccchhHhHHHhhcC
Q 003928 281 ELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKE 360 (786)
Q Consensus 281 ~~L~~l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~d 360 (786)
....+++.+. +++..|+.|++||+|||.+|+...+ .....|+..+. +++..++.+
T Consensus 112 -~~~~i~~el~----~~~~~L~~d~~gn~Viqk~l~~~~~--~~~~~i~~~l~------------------~~~~~l~~~ 166 (333)
T 3bwt_A 112 -EAQIVVDSLR----PYTVQLSKDLNGNHVIQKCLQRLKP--ENFQFIFDAIS------------------DSCIDIATH 166 (333)
T ss_dssp -HHHHHHHHHG----GGHHHHHTSTTHHHHHHHHHHHSCH--HHHHHHHHHHH------------------HSHHHHHTS
T ss_pred -HHHHHHHHHH----HHHHHHhcCCcccHHHHHHHHHCCH--HHHHHHHHHHH------------------HHHHHHhcC
Confidence 0111223332 4678899999999999999987532 22334555433 467789999
Q ss_pred CchhHHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHhHHHHHhhcCccHH
Q 003928 361 TAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVV 440 (786)
Q Consensus 361 ~~gS~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~~eL~~~l~~L~~~~~~~Vv 440 (786)
++||+|+|+||++++++.+..|++.+ .+++..|+.|+|||||||++|+.+++.+ ....
T Consensus 167 ~~Gs~Vvq~~l~~~~~~~~~~l~~el-~~~~~~L~~d~~GnyVvQ~~L~~~~~~~-~~~~-------------------- 224 (333)
T 3bwt_A 167 RHGCCVLQRCLDHGTTEQCDNLCDKL-LALVDKLTLDPFGNYVVQYIITKEAEKN-KYDY-------------------- 224 (333)
T ss_dssp TTHHHHHHHHHHHCCHHHHHHHHHHH-HTTHHHHHTSTTHHHHHHHHHHHHHHHT-CCSH--------------------
T ss_pred chhHHHHHHHHHhCCHHHHHHHHHHH-HHHHHHHhcCChHHHHHHHHHHhCCccc-cchh--------------------
Confidence 99999999999999999888888866 4788899999999999999987653110 0000
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhcccccccccccCCCCCcccccccchhHHHHHHhhCCCCC
Q 003928 441 AALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEF 520 (786)
Q Consensus 441 ~~Lie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~lL~f~~~~ 520 (786)
T Consensus 225 -------------------------------------------------------------------------------- 224 (333)
T 3bwt_A 225 -------------------------------------------------------------------------------- 224 (333)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cHHHHHHHHccCHHHHHHHhhCCCchHHHHHHHcCCCChHHHHHHHHHHH-----HhHHHHhcCCCChHHHHHHHhcCCH
Q 003928 521 IQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLK-----GHFGELSVHPSGSFTVERCFTASSL 595 (786)
Q Consensus 521 ~~~~v~sLl~l~~~~l~~La~d~~GS~VIq~lL~s~~~~k~r~~Li~~L~-----g~~~~LA~~k~GS~VVek~~~~~~~ 595 (786)
...+++.| .+++.+|+++++||+||+++|..+ ..++.++..+. +++..|+.|+||++||+++|+.++.
T Consensus 225 ~~~ii~~l----~~~~~~Ls~~k~gs~Vvek~l~~~---~~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~ 297 (333)
T 3bwt_A 225 THKIVHLL----KPRAIELSIHKFGSNVIEKILKTA---IVSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHK 297 (333)
T ss_dssp HHHHHHHH----GGGHHHHHTSTTHHHHHHHHHTSH---HHHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HHHHHHHHcccHHHHHHHHHHccc---chhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHhccC
Confidence 00111111 135677888999999999988864 23556666654 5789999999999999999998863
Q ss_pred ---HHHHHHHHHHHHhH-hhhhcCCChHHHHHHcc
Q 003928 596 ---SLRETIASELSAVR-NELSKTKQGPHLIRKLD 626 (786)
Q Consensus 596 ---~~Ke~I~~eL~~~~-~~L~~s~~Gr~V~~kl~ 626 (786)
.+++.|+++|.++. ..|+.++||++||.++.
T Consensus 298 ~~~~~~~~l~~~l~p~l~~~lr~~~~G~~i~~~l~ 332 (333)
T 3bwt_A 298 QNDYLYKRLSEIVAPLLVGPIRNTPHGKRIIGMLH 332 (333)
T ss_dssp HCHHHHHHHHHHHGGGCCGGGGGSHHHHHHHTTSC
T ss_pred ccHHHHHHHHHHHHHhchhhhcCCCCHHHHHHHhc
Confidence 57899999999997 89999999999998875
No 2
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=3.1e-40 Score=363.66 Aligned_cols=217 Identities=16% Similarity=0.169 Sum_probs=168.7
Q ss_pred HhhhccchhhhccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHhhcCcchhHHHHHHHHHhHHhhhhhhhhhhHHHH
Q 003928 126 LEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEET 205 (786)
Q Consensus 126 leEi~Gkel~La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L~~d~fGShVlQkLL~~~~~~~~~e~~~~~~ee~ 205 (786)
++++.|+++++|+||+|||+||++|+.++++++..||+++.+++.+||+|+|||||+|++|+.++.. .
T Consensus 21 l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~------------~ 88 (351)
T 3gvo_A 21 LRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD------------Q 88 (351)
T ss_dssp GGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHH------------H
T ss_pred HHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHH------------H
Confidence 7889999999999999999999999999999999999999999999999999999999999988753 2
Q ss_pred HHHHHHHHHcCchhhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHHHHhcccccccCCCCccCCcchHHHHHHH
Q 003928 206 LKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKF 285 (786)
Q Consensus 206 l~~i~~~l~~nl~~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~~~~~~F~~~L~~ 285 (786)
...|.+.+.+++.+|+.|+|||+|||++++.++.. .. ..
T Consensus 89 ~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~-------------------------------------~~----~~ 127 (351)
T 3gvo_A 89 KLALATRIRGHVLPLALQMYGCRVIQKALESISSD-------------------------------------QQ----SE 127 (351)
T ss_dssp HHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHH-------------------------------------HH----HH
T ss_pred HHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHH-------------------------------------HH----HH
Confidence 34577888899999999999999999999875210 00 11
Q ss_pred HHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcCCCCCccCCCccccchhHhHHHhhcCCchhH
Q 003928 286 LISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSH 365 (786)
Q Consensus 286 l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~d~~gS~ 365 (786)
++.++ ..++..|+.|++||+|+|.+|+...+. ....|+..+. +++..++.+++||+
T Consensus 128 i~~el----~~~~~~L~~d~~Gn~ViQk~l~~~~~~--~~~~i~~~~~------------------~~~~~ls~~~~G~~ 183 (351)
T 3gvo_A 128 MVKEL----DGHVLKCVKDQNGNHVVQKCIECVQPQ--SLQFIIDAFK------------------GQVFVLSTHPYGCR 183 (351)
T ss_dssp HHGGG----TTCHHHHHHSTTHHHHHHHHHHHSCGG--GTHHHHHHTT------------------TTHHHHHTSTTHHH
T ss_pred HHHHh----hhhHHHHHHhhhhhHHHHHHHHhCCHH--HHHHHHHHHH------------------HHHHHHHhCcHhHH
Confidence 22222 245677888888888888888865322 1223443321 35778888888888
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhHHHHHHHhhcCCHHHHHHHH
Q 003928 366 LMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIW 421 (786)
Q Consensus 366 vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~ 421 (786)
|+|++|+.++++.+..|++.+ .+++..|+.|+|||||||++|++.+ ++....|+
T Consensus 184 Vvq~~le~~~~~~~~~ii~~l-~~~~~~L~~d~~Gn~ViQ~~l~~~~-~~~~~~i~ 237 (351)
T 3gvo_A 184 VIQRILEHCTAEQTLPILEEL-HQHTEQLVQDQYGNYVIQHVLEHGR-PEDKSKIV 237 (351)
T ss_dssp HHHHHHHHSCHHHHHHHHHHH-HTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHH-hhhHHhcCCCchHHHHHHHHHHhCc-hhhHHHHH
Confidence 888888888888877777754 5788888888888888888888774 44343333
No 3
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=3.3e-40 Score=365.84 Aligned_cols=334 Identities=14% Similarity=0.160 Sum_probs=253.3
Q ss_pred HHHHHhcCCCC-HHHHHHHHHHHHhhhccchhhhccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHhhcCcchhHHH
Q 003928 104 ISNLFESNEVD-LEERSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVA 182 (786)
Q Consensus 104 i~e~l~~~~~d-~EEr~~~v~nvleEi~Gkel~La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L~~d~fGShVl 182 (786)
++|-+..+..+ ..+|. -.|+++.|+++++|+||+|||+||++|+.++++++..+++++.+++..|++|+|||||+
T Consensus 7 lle~~~~~~~~~~~~~~----~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vv 82 (369)
T 3k49_A 7 LLEQLRNSSSDKNSNSN----MSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVI 82 (369)
T ss_dssp HHHHHHTTCC------C----CCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHH
T ss_pred hHHHHhCCCCccccccc----eeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHH
Confidence 46666666432 23343 35689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhhhhhhhhhhHHHHHHHHHHHHHcCchhhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHHHHhcc
Q 003928 183 ETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNL 262 (786)
Q Consensus 183 QkLL~~~~~~~~~e~~~~~~ee~l~~i~~~l~~nl~~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a~~~~~ 262 (786)
|++|+.++... ...|.+.+.+++..|++|+|||||||++++.+...
T Consensus 83 Qkll~~~~~~~------------~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~---------------------- 128 (369)
T 3k49_A 83 QKFFEFGSKIQ------------KNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSN---------------------- 128 (369)
T ss_dssp HHHHHHCCHHH------------HHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHH----------------------
T ss_pred HHHHHhCCHHH------------HHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHH----------------------
Confidence 99999987532 34577888899999999999999999999765110
Q ss_pred cccccCCCCccCCcchHHHHHHHHHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcCCCCCccC
Q 003928 263 DASQSNRNNLSYHHPVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVE 342 (786)
Q Consensus 263 ~~~~~~~~~~~~~~~~F~~~L~~l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~~~~~~~e 342 (786)
....++.++ ..++..|+.|++||+|||.+|+...... ...|+..+.
T Consensus 129 -------------------q~~~ii~el----~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~--~~~i~~~~~--------- 174 (369)
T 3k49_A 129 -------------------QRIELVLEL----SDSVLQMIKDQNGNHVIQKAIETIPIEK--LPFILSSLT--------- 174 (369)
T ss_dssp -------------------HHHHHHGGG----TTCHHHHHHSTTHHHHHHHHHHHSCGGG--CHHHHHHHT---------
T ss_pred -------------------HHHHHHHHH----HHHHHHHhcCcccchHHHHHHHhCCHHH--HHHHHHHHH---------
Confidence 001122232 2467789999999999999999864322 233555432
Q ss_pred CCccccchhHhHHHhhcCCchhHHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhHHHHHHHhhcCCHH-----HH
Q 003928 343 GNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQD-----QM 417 (786)
Q Consensus 343 ~~f~~~~~~~~i~~l~~d~~gS~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~~e-----q~ 417 (786)
+.+..++.+++||+|+|+||+.++++.+..|++. +.+.+..|+.|+|||||||++|+.+.+.. ..
T Consensus 175 ---------~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~-l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~~~~ 244 (369)
T 3k49_A 175 ---------GHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNE-LKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIK 244 (369)
T ss_dssp ---------TTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHT-TTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHHHHH
T ss_pred ---------HHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhHhHH
Confidence 3678899999999999999999999999988875 46889999999999999999999987532 12
Q ss_pred HHHHHHHHHhHHHHHhhcCccHHHHHHHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhcccccccccccCCCCC
Q 003928 418 ALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWP 497 (786)
Q Consensus 418 ~~i~~eL~~~l~~L~~~~~~~Vv~~Lie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~ 497 (786)
..|++.+.+++..|.
T Consensus 245 ~~i~~~l~~~~~~Ls----------------------------------------------------------------- 259 (369)
T 3k49_A 245 QEIIETVANNVVEYS----------------------------------------------------------------- 259 (369)
T ss_dssp HHHHHHHHTTHHHHH-----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-----------------------------------------------------------------
Confidence 233333322222211
Q ss_pred cccccccchhHHHHHHhhCCCC-CcHHHHHHHHccC---------HHHHHHHhhCCCchHHHHHHHcCCCChHHHHHHHH
Q 003928 498 KGIKIQIIGSLILQAVFRFPSE-FIQPYVTSITSME---------ADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVL 567 (786)
Q Consensus 498 ~~~~~~~~G~~vlQ~lL~f~~~-~~~~~v~sLl~l~---------~~~l~~La~d~~GS~VIq~lL~s~~~~k~r~~Li~ 567 (786)
.+.+||.|++++|++.++ ....+++.|+... .+.+..|+.|+|||||||++|+... +..++.|+.
T Consensus 260 ----~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~-~~~~~~l~~ 334 (369)
T 3k49_A 260 ----KHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSE-GEGKKLIVI 334 (369)
T ss_dssp ----TSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCC-HHHHHHHHH
T ss_pred ----hhhHhhHHHHHHHHhCCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHHHhCC-HHHHHHHHH
Confidence 245788888888877654 2234555554432 3357899999999999999999865 568999999
Q ss_pred HHHHhHHHHhc-CCCChHHHHHH
Q 003928 568 KLKGHFGELSV-HPSGSFTVERC 589 (786)
Q Consensus 568 ~L~g~~~~LA~-~k~GS~VVek~ 589 (786)
.+.+++..|+. ++||++++.++
T Consensus 335 ~i~p~l~~L~~~~~~G~~~~~~~ 357 (369)
T 3k49_A 335 AIRAYLDKLNKSNSLGNRHLASV 357 (369)
T ss_dssp HHHHHHHHHHHCC--CCCCCHHH
T ss_pred HHHHHHHHHhccccCcchHHHHH
Confidence 99999999987 59999987654
No 4
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=7.6e-38 Score=346.85 Aligned_cols=336 Identities=16% Similarity=0.221 Sum_probs=264.4
Q ss_pred chhHHHHHHhcCCC--HHHHHHHHHHHhhhHhHhhcCcchhHHHHHHHHHhHHhhhhhhhhhhHHHHHHHHHHHHHcCch
Q 003928 141 IISHTLQTLLEGCD--VDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPV 218 (786)
Q Consensus 141 ~gSrvLEkLl~~~~--~eql~~~l~~l~~~~~~L~~d~fGShVlQkLL~~~~~~~~~e~~~~~~ee~l~~i~~~l~~nl~ 218 (786)
+.|++||++....+ +.+....++++.|++..||.|++||||||++|+.+.+. ....|++++.+++.
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~------------~~~~I~~el~~~~~ 70 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPAS------------EKEVIFNEIRDDAI 70 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHH------------HHHHHHHHHGGGHH
T ss_pred CcchhHHHHhCCCCccccccceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHH------------HHHHHHHHHHHHHH
Confidence 56899999999985 46778899999999999999999999999999987642 24568888999999
Q ss_pred hhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHHHHhcccccccCCCCccCCcchHHHHHHHHHHHHHHhhhhhH
Q 003928 219 DVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRKDL 298 (786)
Q Consensus 219 ~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~~~~~~F~~~L~~l~~~ll~~~~~~i 298 (786)
+|++|+|||||+|++|...+. +....+++.+. +++
T Consensus 71 ~L~~d~~gn~vvQkll~~~~~-----------------------------------------~~~~~i~~~~~----g~~ 105 (369)
T 3k49_A 71 ELSNDVFGNYVIQKFFEFGSK-----------------------------------------IQKNTLVDQFK----GNM 105 (369)
T ss_dssp HHHHSTTTHHHHHHHHHHCCH-----------------------------------------HHHHHHHHHHT----TCH
T ss_pred HHhhCcccccHHHHHHHhCCH-----------------------------------------HHHHHHHHHHh----hhH
Confidence 999999999999999987511 01112333332 578
Q ss_pred hhhhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcCCCCCccCCCccccchhHhHHHhhcCCchhHHHHHHHhhCCHHH
Q 003928 299 RTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSL 378 (786)
Q Consensus 299 ~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~d~~gS~vlEk~L~~~~~~~ 378 (786)
..|+.|+|||+|||.+++.+.. +....++..+ .+++..|++|++|+||+|++|+.++++.
T Consensus 106 ~~L~~~~~G~rVlQk~le~~~~--~q~~~ii~el------------------~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~ 165 (369)
T 3k49_A 106 KQLSLQMYACRVIQKALEYIDS--NQRIELVLEL------------------SDSVLQMIKDQNGNHVIQKAIETIPIEK 165 (369)
T ss_dssp HHHHHSTTHHHHHHHHHHHSCH--HHHHHHHGGG------------------TTCHHHHHHSTTHHHHHHHHHHHSCGGG
T ss_pred HHHhcChhhHHHHHHHHHhCCH--HHHHHHHHHH------------------HHHHHHHhcCcccchHHHHHHHhCCHHH
Confidence 8999999999999999987532 2233444322 1467889999999999999999999998
Q ss_pred HHHHHHHHhHhhHHhhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHhHHHHHhhcCccHHHHHHHHHHhhhhhhHHHH
Q 003928 379 YDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCC 458 (786)
Q Consensus 379 ~~~i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~~eL~~~l~~L~~~~~~~Vv~~Lie~c~r~~~~q~~~i 458 (786)
+..|++. +.+++..|+.|+||+.|||++|++++ +++...|+++|.+++..|+
T Consensus 166 ~~~i~~~-~~~~~~~ls~~~~Gs~Vvq~~l~~~~-~~~~~~i~~~l~~~~~~L~-------------------------- 217 (369)
T 3k49_A 166 LPFILSS-LTGHIYHLSTHSYGCRVIQRLLEFGS-SEDQESILNELKDFIPYLI-------------------------- 217 (369)
T ss_dssp CHHHHHH-HTTTHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHTTTTCHHHHH--------------------------
T ss_pred HHHHHHH-HHHHHHHHhCCCccCcHHHHHHHhCC-HHHHHHHHHHHHHHHHHHh--------------------------
Confidence 8888885 47999999999999999999999996 5667777777654322111
Q ss_pred HHHHHhhccCCCcccchhhhhhhcccccccccccCCCCCcccccccchhHHHHHHhhCCCCCcHH---HHHHHHccCHHH
Q 003928 459 EALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQP---YVTSITSMEADH 535 (786)
Q Consensus 459 ~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~lL~f~~~~~~~---~v~sLl~l~~~~ 535 (786)
.+.+|+.|+|++|+..++.... ....++....++
T Consensus 218 -------------------------------------------~d~~GnyViQ~~l~~~~~~~~~~~~~~~~i~~~l~~~ 254 (369)
T 3k49_A 218 -------------------------------------------QDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANN 254 (369)
T ss_dssp -------------------------------------------HSTTHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHTT
T ss_pred -------------------------------------------cCCcHHHHHHHHHhcCCchhhhhHhHHHHHHHHHHHH
Confidence 1347999999999998764321 123344434468
Q ss_pred HHHHhhCCCchHHHHHHHcCCCChHHHHHHHHHHHH-------------hHHHHhcCCCChHHHHHHHhcCCHHHHHHHH
Q 003928 536 VLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKG-------------HFGELSVHPSGSFTVERCFTASSLSLRETIA 602 (786)
Q Consensus 536 l~~La~d~~GS~VIq~lL~s~~~~k~r~~Li~~L~g-------------~~~~LA~~k~GS~VVek~~~~~~~~~Ke~I~ 602 (786)
+++|++|++||+|||++|.... ++.|+.|+..|.+ .+..|+.|+||+|||+++|+.++..+|+.|+
T Consensus 255 ~~~Ls~~k~gS~Vvek~l~~~~-~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~~~~~~~l~ 333 (369)
T 3k49_A 255 VVEYSKHKFASNVVEKSILYGS-KNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEGKKLIV 333 (369)
T ss_dssp HHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHhhhHhhHHHHHHHHhCC-HHHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHHHhCCHHHHHHHH
Confidence 9999999999999999999874 6789999998854 4789999999999999999999999999999
Q ss_pred HHHHHhHhhhhc-CCChHHHHHHc
Q 003928 603 SELSAVRNELSK-TKQGPHLIRKL 625 (786)
Q Consensus 603 ~eL~~~~~~L~~-s~~Gr~V~~kl 625 (786)
++|.++...|+. ++||++++..+
T Consensus 334 ~~i~p~l~~L~~~~~~G~~~~~~~ 357 (369)
T 3k49_A 334 IAIRAYLDKLNKSNSLGNRHLASV 357 (369)
T ss_dssp HHHHHHHHHHHHCC--CCCCCHHH
T ss_pred HHHHHHHHHHhccccCcchHHHHH
Confidence 999999999986 59998877544
No 5
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=2.7e-35 Score=327.12 Aligned_cols=328 Identities=13% Similarity=0.187 Sum_probs=239.0
Q ss_pred HHhhh--ccchhhhccCCchhHHHHHHhcCCCHHH-HHHHHHHHh---hhHhHhhcCcchhHHHHHHHHHhHHhhhhhhh
Q 003928 125 ALEET--RGKELELATDYIISHTLQTLLEGCDVDH-LCSFLRGCA---KVFPAIAMDRSGSHVAETALKSLAMHLQDEHA 198 (786)
Q Consensus 125 vleEi--~Gkel~La~dq~gSrvLEkLl~~~~~eq-l~~~l~~l~---~~~~~L~~d~fGShVlQkLL~~~~~~~~~e~~ 198 (786)
.++++ +|+.+++|.||+|||+||++|+.+++++ ...+|+++. +++.+||.|+|||||+|++|+.++...+
T Consensus 12 ~L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~---- 87 (382)
T 3v71_A 12 SLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQ---- 87 (382)
T ss_dssp CHHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHH----
T ss_pred cHHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHH----
Confidence 46677 7999999999999999999999998766 467888875 6899999999999999999999875321
Q ss_pred hhhHHHHHHHHHH-HHHcCchhhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHHHHhcccccccCCCCccCCcc
Q 003928 199 HSIIEETLKSICK-VIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHP 277 (786)
Q Consensus 199 ~~~~ee~l~~i~~-~l~~nl~~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~~~~~ 277 (786)
..+.. .+.+++..|+.|.|||||+|++++.+.. +
T Consensus 88 --------~~li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~-------------------------------------~ 122 (382)
T 3v71_A 88 --------RELLRQMIDGGLLAMCKDKFACRVVQLALQKFDH-------------------------------------S 122 (382)
T ss_dssp --------HHHHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCH-------------------------------------H
T ss_pred --------HHHHHHHhcchHHHHHhCccchHHHHHHHHHCCH-------------------------------------H
Confidence 23333 3568999999999999999999987510 0
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcCCCCCccCCCccccchhHhHHHh
Q 003928 278 VFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNL 357 (786)
Q Consensus 278 ~F~~~L~~l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l 357 (786)
....++.++. . .++..+
T Consensus 123 ----~~~~li~eL~----~-------------------------------------------------------~~~~~L 139 (382)
T 3v71_A 123 ----NVFQLIQELS----T-------------------------------------------------------FDLAAM 139 (382)
T ss_dssp ----HHHHHHHHHH----T-------------------------------------------------------SCHHHH
T ss_pred ----HHHHHHHHhc----c-------------------------------------------------------cchHHH
Confidence 0001111111 0 023457
Q ss_pred hcCCchhHHHHHHHhhCCHHHHHHHHHHHhH-hhHHhhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHhHHHHHhhcC
Q 003928 358 MKETAYSHLMEVILEVAPQSLYDEMFTKVFR-NSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLEMGR 436 (786)
Q Consensus 358 ~~d~~gS~vlEk~L~~~~~~~~~~i~~~~~~-~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~~eL~~~l~~L~~~~~ 436 (786)
++|++|+||+|+||+.++++..+.|++.+.. +++..|+.|+||++|||++|+++++.+ ...+++...
T Consensus 140 ~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~~~~~~~~la~h~~Gc~VlQ~~le~~~~~~-k~~~~~~r~----------- 207 (382)
T 3v71_A 140 CTDQISIHVIQRVVKQLPVDMWTFFVHFLSSGDSLMAVCQDKYGCRLVQQVIDRLAENP-KLPCFKFRI----------- 207 (382)
T ss_dssp HHSTTTHHHHHHHHTTSCTTTSHHHHHHHHSTTHHHHHHHSTTHHHHHHHHHHHHTCCS-SSTTHHHHH-----------
T ss_pred hcCcccccHHHHHHHHCCHHHHHHHHHHHhcccchHhHhcCchhhHHHHHHHHhCCHhh-hhhhhhHHH-----------
Confidence 7788888888888888887777777775542 689999999999999999999997532 111111000
Q ss_pred ccHHHHHHHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhcccccccccccCCCCCcccccccchhHHHHHHhhC
Q 003928 437 SGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRF 516 (786)
Q Consensus 437 ~~Vv~~Lie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~lL~f 516 (786)
+++..|+..+ ++.+..| ..+.+|+.|+|++|+.
T Consensus 208 -------------------~~l~~l~~~I----------~~~~~~L------------------~~d~~GNyVIQ~iL~~ 240 (382)
T 3v71_A 208 -------------------QLLHSLMTCI----------VRNCYRL------------------SSNEFANYVIQYVIKS 240 (382)
T ss_dssp -------------------HHHHHHHHHH----------HTTHHHH------------------HTSTTTHHHHHHHHTC
T ss_pred -------------------HHHHHHHHHH----------HHHHHHH------------------hhCccccHHHHHHHhc
Confidence 0011111111 0011111 1245899999999998
Q ss_pred CCCCcHHHHHHHHc-cCHHHHHHHhhCCCchHHHHHHHcCCCChHHHHHHHHHHHH-----------hHHHHhcCCCChH
Q 003928 517 PSEFIQPYVTSITS-MEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKG-----------HFGELSVHPSGSF 584 (786)
Q Consensus 517 ~~~~~~~~v~sLl~-l~~~~l~~La~d~~GS~VIq~lL~s~~~~k~r~~Li~~L~g-----------~~~~LA~~k~GS~ 584 (786)
..+. ......++. ...++++.|++|+|||+|||++|.... +..|..|++.|.+ .+..|+.|+||++
T Consensus 241 ~~~~-e~~r~~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~-~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNy 318 (382)
T 3v71_A 241 SGIM-EMYRDTIIDKCLLRNLLSMSQDKYASHVIEGAFLFAP-PALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNY 318 (382)
T ss_dssp CSTH-HHHHHHHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCC-HHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHH
T ss_pred CCCc-HHHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHhCC-HHHHHHHHHHHHhhccccccccchHHHHHHCCCCccH
Confidence 7531 122333443 234689999999999999999999765 5789999999874 7889999999999
Q ss_pred HHHHHHhcCCHH-------------------HHHHHHHHHHHhHhhhhcCCChHHHHHHc
Q 003928 585 TVERCFTASSLS-------------------LRETIASELSAVRNELSKTKQGPHLIRKL 625 (786)
Q Consensus 585 VVek~~~~~~~~-------------------~Ke~I~~eL~~~~~~L~~s~~Gr~V~~kl 625 (786)
||+++++.++.. .++.|+..+.++...|+..+||++|+.++
T Consensus 319 VvQ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~~l 378 (382)
T 3v71_A 319 VVQQMISICTAALIGKEERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSV 378 (382)
T ss_dssp HHHHHHHHHHHHCC-----CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHcccccccchhcccchhHHhhhhHHHHHHHHHHHHHHHHhhhCCchHHHHHHH
Confidence 999999998652 25789999999999999999999999876
No 6
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=8.3e-35 Score=325.54 Aligned_cols=325 Identities=14% Similarity=0.165 Sum_probs=240.3
Q ss_pred ccchhhhccCCchhHHHHHHhcCC-CHHHHHHHHHHHhhh---HhHhhcCcchhHHHHHHHHHhHHhhhhhhhhhhHHHH
Q 003928 130 RGKELELATDYIISHTLQTLLEGC-DVDHLCSFLRGCAKV---FPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEET 205 (786)
Q Consensus 130 ~Gkel~La~dq~gSrvLEkLl~~~-~~eql~~~l~~l~~~---~~~L~~d~fGShVlQkLL~~~~~~~~~e~~~~~~ee~ 205 (786)
+|+.+++|.||+|||+||++|+.+ +++++..+|+++.++ +.+||+|+||+||+|++|+.++.... + .+.+.
T Consensus 28 ~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~--~---~~~~q 102 (412)
T 3k62_A 28 SGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATND--D---GYTKR 102 (412)
T ss_dssp HTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCS--T---THHHH
T ss_pred CCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccc--c---ccHHH
Confidence 699999999999999999999997 899999999999875 89999999999999999999875100 0 00012
Q ss_pred HHHHHHHHHcCchhhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHHHHhcccccccCCCCccCCcchHHHHHHH
Q 003928 206 LKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKF 285 (786)
Q Consensus 206 l~~i~~~l~~nl~~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~~~~~~F~~~L~~ 285 (786)
-..|.+.+.+++.+|+.|+|||||||+++..+.. + ..
T Consensus 103 ~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~-------------------------------------~----~~-- 139 (412)
T 3k62_A 103 QEKLKNFISSQMTDMCLDKFACRVIQSSLQNMDL-------------------------------------S----LA-- 139 (412)
T ss_dssp HHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCH-------------------------------------H----HH--
T ss_pred HHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCCH-------------------------------------H----HH--
Confidence 2346677788999999999999999999976410 0 00
Q ss_pred HHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcCCCCCccCCCccccchhHhHHHhhcCCchhH
Q 003928 286 LISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSH 365 (786)
Q Consensus 286 l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~d~~gS~ 365 (786)
..|+ ..+. ..+.+..|++|++|+|
T Consensus 140 --~~iv--------------------------------------~eL~----------------~~~~i~~L~~D~~GNh 163 (412)
T 3k62_A 140 --CKLV--------------------------------------QALP----------------RDARLIAICVDQNANH 163 (412)
T ss_dssp --HHHH--------------------------------------HTSC----------------CSHHHHHHHHCTTTHH
T ss_pred --HHHH--------------------------------------HHHh----------------ccccHHHHHhCccccH
Confidence 0111 0000 0024556888999999
Q ss_pred HHHHHHhhCCHHHHHHHHHHHhH-hhHHhhhcCcchhHHHHHHHhhcCCH-----------HHHHHHHHHHHHhHHHHHh
Q 003928 366 LMEVILEVAPQSLYDEMFTKVFR-NSLFDLSSHHCANFVVQALVSHARDQ-----------DQMALIWEELGGKFRELLE 433 (786)
Q Consensus 366 vlEk~L~~~~~~~~~~i~~~~~~-~~l~~La~d~~gNyVVQklLe~~~~~-----------eq~~~i~~eL~~~l~~L~~ 433 (786)
|+|+||+.++++.+..|++.+.. +++.+|+.|+||+.|||++|+++++. ++...++++|
T Consensus 164 VIQK~Le~~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L--------- 234 (412)
T 3k62_A 164 VIQKVVAVIPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRL--------- 234 (412)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHH---------
Confidence 99999999988888888885542 68999999999999999999999752 2222222222
Q ss_pred hcCccHHHHHHHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhcccccccccccCCCCCcccccccchhHHHHHH
Q 003928 434 MGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAV 513 (786)
Q Consensus 434 ~~~~~Vv~~Lie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~l 513 (786)
...+ ++.+..| ..+.+|++|+|++
T Consensus 235 ----------------------------~~~I----------~~~~~~L------------------~~dq~GNyViQ~i 258 (412)
T 3k62_A 235 ----------------------------MTSV----------TNRCQEL------------------ATNEYANYIIQHI 258 (412)
T ss_dssp ----------------------------HHHH----------HHTHHHH------------------HHSTTTHHHHHHH
T ss_pred ----------------------------HHHH----------HHHHHHH------------------hhCccccHHHHHH
Confidence 1111 1111111 1145799999999
Q ss_pred hhCCCCCcHHHHHHHHc-cCHHHHHHHhhCCCchHHHHHHHcCCCChHHHHHHHHHHHH-----------hHHHHhcCCC
Q 003928 514 FRFPSEFIQPYVTSITS-MEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKG-----------HFGELSVHPS 581 (786)
Q Consensus 514 L~f~~~~~~~~v~sLl~-l~~~~l~~La~d~~GS~VIq~lL~s~~~~k~r~~Li~~L~g-----------~~~~LA~~k~ 581 (786)
|+...+. .....++. ...++++.||+|+|||+|||++|.... +..|..|+..|.. .+..|+.|+|
T Consensus 259 L~~g~~~--~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~-~~~r~~ii~ei~~~~~~~~~~~~~~l~~L~~Dqy 335 (412)
T 3k62_A 259 VSNDDLA--VYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAP-LELLAEMMDEIFDGYIPHPDTGKDALDIMMFHQF 335 (412)
T ss_dssp HHCGGGH--HHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCC-HHHHHHHHHHHHHSSCCCTTTCCCHHHHHHHSTT
T ss_pred HhcCCch--hHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCC-HHHHHHHHHHHHhhccCCccccchHHHHHhcCCc
Confidence 9986542 12223332 234578999999999999999998765 5678888888864 4888999999
Q ss_pred ChHHHHHHHhcCCHH--------------------HHHHHHHHHHHhHhhhhcCCChHHHHHHcc
Q 003928 582 GSFTVERCFTASSLS--------------------LRETIASELSAVRNELSKTKQGPHLIRKLD 626 (786)
Q Consensus 582 GS~VVek~~~~~~~~--------------------~Ke~I~~eL~~~~~~L~~s~~Gr~V~~kl~ 626 (786)
|+|||+++++.++.. .++.|+..+.++...|....||++|+..+.
T Consensus 336 GNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~~~~~Gk~i~~~l~ 400 (412)
T 3k62_A 336 GNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLSRFSSGKKMIETLA 400 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHTTSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCccHHHHHHH
Confidence 999999999988432 357899999999999999999999987763
No 7
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=7.9e-35 Score=320.49 Aligned_cols=294 Identities=19% Similarity=0.251 Sum_probs=239.3
Q ss_pred CHHHHHHHHHHHHhhhccchhhhccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHhhcCcchhHHHHHHHHHhHHhh
Q 003928 114 DLEERSVLCRNALEETRGKELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAETALKSLAMHL 193 (786)
Q Consensus 114 d~EEr~~~v~nvleEi~Gkel~La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L~~d~fGShVlQkLL~~~~~~~ 193 (786)
+++++.. +|+|+.++.++|++|++|++++|++|+.++++|...|++.+.+++..|+.|+|||||+|++|+.++...
T Consensus 49 ~~~~~~~----i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~ 124 (351)
T 3gvo_A 49 TPAERQI----VFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQ 124 (351)
T ss_dssp CHHHHHH----HHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHH
T ss_pred CHHHHHH----HHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHH
Confidence 4667654 677888899999999999999999999999999999999999999999999999999999999886432
Q ss_pred hhhhhhhhHHHHHHHHHHHHHcCchhhhccCCcchHHHHHHHHhhCCCCCCchhhcccchHHHHHHhcccccccCCCCcc
Q 003928 194 QDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGAPLDSSDFHRAKPSQILAERLNLDASQSNRNNLS 273 (786)
Q Consensus 194 ~~e~~~~~~ee~l~~i~~~l~~nl~~Li~D~~gSHVlR~lL~~lsG~~~~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~ 273 (786)
...|+.++.+++.+|+.|+|||||+|++++..+..
T Consensus 125 ------------~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~--------------------------------- 159 (351)
T 3gvo_A 125 ------------QSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQ--------------------------------- 159 (351)
T ss_dssp ------------HHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGG---------------------------------
T ss_pred ------------HHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHH---------------------------------
Confidence 24577888999999999999999999999864211
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcCCCCCccCCCccccchhHh
Q 003928 274 YHHPVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHD 353 (786)
Q Consensus 274 ~~~~~F~~~L~~l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~ 353 (786)
.. ..+++.+ .+++..+++|+|||.|||.+|+.+.+ +....|+..|. ..
T Consensus 160 ----~~----~~i~~~~----~~~~~~ls~~~~G~~Vvq~~le~~~~--~~~~~ii~~l~------------------~~ 207 (351)
T 3gvo_A 160 ----SL----QFIIDAF----KGQVFVLSTHPYGCRVIQRILEHCTA--EQTLPILEELH------------------QH 207 (351)
T ss_dssp ----GT----HHHHHHT----TTTHHHHHTSTTHHHHHHHHHHHSCH--HHHHHHHHHHH------------------TT
T ss_pred ----HH----HHHHHHH----HHHHHHHHhCcHhHHHHHHHHHHCCH--HHHHHHHHHHh------------------hh
Confidence 00 1122222 25678999999999999999998642 33345665543 35
Q ss_pred HHHhhcCCchhHHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHHhHHHHHh
Q 003928 354 VLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGGKFRELLE 433 (786)
Q Consensus 354 i~~l~~d~~gS~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~~eL~~~l~~L~~ 433 (786)
+..|++|++|+||+|.+|+.++++.+..|++ .+.+++..|+.|+||++||+++|++++ +++...|++++..
T Consensus 208 ~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~-~l~~~~~~Ls~~k~gs~Vvek~l~~~~-~~~r~~ii~el~~------- 278 (351)
T 3gvo_A 208 TEQLVQDQYGNYVIQHVLEHGRPEDKSKIVS-EIRGKVLALSQHKFASNVVEKCVTHAS-RAERALLIDEVCC------- 278 (351)
T ss_dssp HHHHHTSTTHHHHHHHHHHHSCHHHHHHHHH-TTTTCHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHS-------
T ss_pred HHhcCCCchHHHHHHHHHHhCchhhHHHHHH-HHHHHHHHHhcCcHHHHHHHHHHHhCC-HHHHHHHHHHHhc-------
Confidence 7789999999999999999999999998887 458999999999999999999999996 4556555555410
Q ss_pred hcCccHHHHHHHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhhhcccccccccccCCCCCcccccccchhHHHHHH
Q 003928 434 MGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAV 513 (786)
Q Consensus 434 ~~~~~Vv~~Lie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~l 513 (786)
.. .|
T Consensus 279 ------------------------------------------------~~---------------------~~------- 282 (351)
T 3gvo_A 279 ------------------------------------------------QN---------------------DG------- 282 (351)
T ss_dssp ------------------------------------------------CE---------------------ET-------
T ss_pred ------------------------------------------------cc---------------------CC-------
Confidence 00 00
Q ss_pred hhCCCCCcHHHHHHHHccCHHHHHHHhhCCCchHHHHHHHcCCCChHHHHHHHHHHHHhHHHHhcCCCChHHHHHHHhc
Q 003928 514 FRFPSEFIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVSAKQKHRVVLKLKGHFGELSVHPSGSFTVERCFTA 592 (786)
Q Consensus 514 L~f~~~~~~~~v~sLl~l~~~~l~~La~d~~GS~VIq~lL~s~~~~k~r~~Li~~L~g~~~~LA~~k~GS~VVek~~~~ 592 (786)
+ .+.+..|+.|+|||||||++|+... +..|..|+..+.+++..|+.++||++|++++-..
T Consensus 283 -----~-------------~~~l~~l~~d~ygnyViq~~L~~~~-~~~r~~i~~~i~~~~~~L~~~~~g~~i~~kl~~~ 342 (351)
T 3gvo_A 283 -----P-------------HSALYTMMKDQYANYVVQKMIDMAE-PAQRKIIMHKIRPHITTLRKYTYGKHILAKLEKY 342 (351)
T ss_dssp -----T-------------EEHHHHHHHSTTHHHHHHHHHHHCC-HHHHHHHHHHHGGGHHHHTTSTTTHHHHHHHHHH
T ss_pred -----C-------------ChHHHHccCCcchHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 0 1246789999999999999999876 5689999999999999999999999999987543
No 8
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=4.6e-34 Score=319.54 Aligned_cols=285 Identities=13% Similarity=0.153 Sum_probs=217.2
Q ss_pred hhhHhHhhcCcchhHHHHHHHHHh-HHhhhhhhhhhhHHHHHHHHHHHHHcC---chhhhccCCcchHHHHHHHHhhCCC
Q 003928 166 AKVFPAIAMDRSGSHVAETALKSL-AMHLQDEHAHSIIEETLKSICKVIVAN---PVDVMCNCYGSHVLRSLLCLCRGAP 241 (786)
Q Consensus 166 ~~~~~~L~~d~fGShVlQkLL~~~-~~~~~~e~~~~~~ee~l~~i~~~l~~n---l~~Li~D~~gSHVlR~lL~~lsG~~ 241 (786)
.|++.++|.|++||++||+.|+.. .+ +....|++++.++ +.+|++|+|||||||++|+.++...
T Consensus 28 ~G~i~~la~Dq~GsR~lQ~~l~~~~~~------------e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~ 95 (412)
T 3k62_A 28 SGDLMKFAVDKTGCQFLEKAVKGSLTS------------YQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATN 95 (412)
T ss_dssp HTCHHHHHTSHHHHHHHHHHTTSCCCH------------HHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCC
T ss_pred CCCcHHHhcCChhHHHHHHHhccCCCH------------HHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCccc
Confidence 599999999999999999999875 32 1234677888776 7899999999999999998863211
Q ss_pred CCCchhhcccchHHHHHHhcccccccCCCCccCCcchHHHHHHHHHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCC
Q 003928 242 LDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGN 321 (786)
Q Consensus 242 ~~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~~~~~~F~~~L~~l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~ 321 (786)
. ..|.+.-..
T Consensus 96 ~----------------------------------~~~~~q~~~------------------------------------ 105 (412)
T 3k62_A 96 D----------------------------------DGYTKRQEK------------------------------------ 105 (412)
T ss_dssp S----------------------------------TTHHHHHHH------------------------------------
T ss_pred c----------------------------------cccHHHHHH------------------------------------
Confidence 0 111111011
Q ss_pred ChHHHHHHHHHhcCCCCCccCCCccccchhHhHHHhhcCCchhHHHHHHHhhCCHHHHHHHHHHHh-HhhHHhhhcCcch
Q 003928 322 DPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVF-RNSLFDLSSHHCA 400 (786)
Q Consensus 322 ~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~d~~gS~vlEk~L~~~~~~~~~~i~~~~~-~~~l~~La~d~~g 400 (786)
|+..+. +++..++.|++|||+||++|+.++++.+..|+..+. .+++..|+.|+||
T Consensus 106 ------i~~~l~------------------g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~G 161 (412)
T 3k62_A 106 ------LKNFIS------------------SQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNA 161 (412)
T ss_dssp ------HHHHHH------------------HTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTTT
T ss_pred ------HHHHHH------------------HHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhCccc
Confidence 111111 345567888888888888888888888888888654 6899999999999
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHH--hHHHHHhhcCccHHHHHHHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhh
Q 003928 401 NFVVQALVSHARDQDQMALIWEELGG--KFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPG 478 (786)
Q Consensus 401 NyVVQklLe~~~~~eq~~~i~~eL~~--~l~~L~~~~~~~Vv~~Lie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~ 478 (786)
|||||++|+.++ +++...|++.+.+ ++.
T Consensus 162 NhVIQK~Le~~~-~~~~~~I~~~~~~~~~~~------------------------------------------------- 191 (412)
T 3k62_A 162 NHVIQKVVAVIP-LKNWEFIVDFVATPEHLR------------------------------------------------- 191 (412)
T ss_dssp HHHHHHHHHHSC-HHHHHHHHHHHHSHHHHH-------------------------------------------------
T ss_pred cHHHHHHHHhCC-HHHHHHHHHHHhcchhHH-------------------------------------------------
Confidence 999999999995 5667767666531 111
Q ss_pred hhhcccccccccccCCCCCcccccccchhHHHHHHhhCCCCCc-----------H--HHHHHHHccCHHHHHHHhhCCCc
Q 003928 479 ILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFI-----------Q--PYVTSITSMEADHVLEAAKDAAG 545 (786)
Q Consensus 479 lL~L~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~lL~f~~~~~-----------~--~~v~sLl~l~~~~l~~La~d~~G 545 (786)
.+ ..+.+||+|+|++|++..+.. + .++..|++.....+..|+.|+||
T Consensus 192 --~l------------------a~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~G 251 (412)
T 3k62_A 192 --QI------------------CSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYA 251 (412)
T ss_dssp --HH------------------HTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTT
T ss_pred --HH------------------hcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 11 125689999999998765321 1 12334444444677899999999
Q ss_pred hHHHHHHHcCCCChHHHHHHHH-HHHHhHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHHh-----------Hhhhh
Q 003928 546 ARVIEAYLSSKVSAKQKHRVVL-KLKGHFGELSVHPSGSFTVERCFTASSLSLRETIASELSAV-----------RNELS 613 (786)
Q Consensus 546 S~VIq~lL~s~~~~k~r~~Li~-~L~g~~~~LA~~k~GS~VVek~~~~~~~~~Ke~I~~eL~~~-----------~~~L~ 613 (786)
|||||++|+.+.++..+..|+. .|.+++++||+++|||+|||+|++.++...|..|++||... ...|.
T Consensus 252 NyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ii~ei~~~~~~~~~~~~~~l~~L~ 331 (412)
T 3k62_A 252 NYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTGKDALDIMM 331 (412)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHSSCCCTTTCCCHHHHHH
T ss_pred cHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCCHHHHHHHHHHHHhhccCCccccchHHHHHh
Confidence 9999999999865445778887 59999999999999999999999999999999999999863 56799
Q ss_pred cCCChHHHHHHcc
Q 003928 614 KTKQGPHLIRKLD 626 (786)
Q Consensus 614 ~s~~Gr~V~~kl~ 626 (786)
.|+||+||++++.
T Consensus 332 ~DqyGNYViQ~~L 344 (412)
T 3k62_A 332 FHQFGNYVVQCML 344 (412)
T ss_dssp HSTTHHHHHHHHH
T ss_pred cCCchHHHHHHHH
Confidence 9999999999863
No 9
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=2.5e-33 Score=306.28 Aligned_cols=277 Identities=17% Similarity=0.233 Sum_probs=203.0
Q ss_pred HHHHHhhhHhHhhcCcchhHHHHHHHHHhHHhhhhhhhhhhHHHHHHHHHHHHHcCchhhhccCCcchHHHHHHHHhhCC
Q 003928 161 FLRGCAKVFPAIAMDRSGSHVAETALKSLAMHLQDEHAHSIIEETLKSICKVIVANPVDVMCNCYGSHVLRSLLCLCRGA 240 (786)
Q Consensus 161 ~l~~l~~~~~~L~~d~fGShVlQkLL~~~~~~~~~e~~~~~~ee~l~~i~~~l~~nl~~Li~D~~gSHVlR~lL~~lsG~ 240 (786)
+++.+.|++..||.|++|||++|++|+.+... ....|++++.+++.+|++|+|||||+|++|+.++.
T Consensus 7 ~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~------------~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~- 73 (333)
T 3bwt_A 7 VLDQYIGSIHSLCKDQHGCRFLQKQLDILGSK------------AADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTT- 73 (333)
T ss_dssp CGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHH------------HHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCH-
T ss_pred cHHHHHHHHHHHhcCcHhhHHHHHHHccCCHH------------HHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCH-
Confidence 46778999999999999999999999987642 34567888999999999999999999999987511
Q ss_pred CCCCchhhcccchHHHHHHhcccccccCCCCccCCcchHHHHHHHHHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcC
Q 003928 241 PLDSSDFHRAKPSQILAERLNLDASQSNRNNLSYHHPVFSELSKFLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVG 320 (786)
Q Consensus 241 ~~~~~~~~rsK~s~~~a~~~~~~~~~~~~~~~~~~~~~F~~~L~~l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~ 320 (786)
. ....+++.+. +++..++.|+|||+|||.+++.+.+
T Consensus 74 ------------------------------------~----~~~~i~~~~~----~~~~~l~~~~~G~rviQ~~l~~~~~ 109 (333)
T 3bwt_A 74 ------------------------------------E----QRIVLTKISS----PHFVEISLNPHGTRALQKLIECIKT 109 (333)
T ss_dssp ------------------------------------H----HHHHHHHHHG----GGHHHHHHSTTHHHHHHHHHHHCCS
T ss_pred ------------------------------------H----HHHHHHHHHH----hHHHHHHhcccccHHHHHHHHhcCc
Confidence 0 0111222222 4677788888888888888887532
Q ss_pred CChHHHHHHHHHhcCCCCCccCCCccccchhHhHHHhhcCCchhHHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcch
Q 003928 321 NDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHCA 400 (786)
Q Consensus 321 ~~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~d~~gS~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~g 400 (786)
. .....++..|. +.+..|++|++|+||+|++|+.++++.++.|++. +.+++.+|+.|+||
T Consensus 110 ~-~~~~~i~~el~------------------~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~-l~~~~~~l~~~~~G 169 (333)
T 3bwt_A 110 D-EEAQIVVDSLR------------------PYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDA-ISDSCIDIATHRHG 169 (333)
T ss_dssp H-HHHHHHHHHHG------------------GGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHH-HHHSHHHHHTSTTH
T ss_pred H-HHHHHHHHHHH------------------HHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHhcCchh
Confidence 1 11222333321 3456677777777777777777777766666663 35677777777777
Q ss_pred hHHHHHHHhhcCCHHHHHHHHHHHHHhHHHHHhhcCccHHHHHHHHHHhhhhhhHHHHHHHHHhhccCCCcccchhhhhh
Q 003928 401 NFVVQALVSHARDQDQMALIWEELGGKFRELLEMGRSGVVAALIAASQRLHTHERKCCEALAAAVSSTNVSPRCIVPGIL 480 (786)
Q Consensus 401 NyVVQklLe~~~~~eq~~~i~~eL~~~l~~L~~~~~~~Vv~~Lie~c~r~~~~q~~~i~~L~~al~~~~e~~~~iv~~lL 480 (786)
+.|||+++++++ +++...|+++|
T Consensus 170 s~Vvq~~l~~~~-~~~~~~l~~el-------------------------------------------------------- 192 (333)
T 3bwt_A 170 CCVLQRCLDHGT-TEQCDNLCDKL-------------------------------------------------------- 192 (333)
T ss_dssp HHHHHHHHHHCC-HHHHHHHHHHH--------------------------------------------------------
T ss_pred HHHHHHHHHhCC-HHHHHHHHHHH--------------------------------------------------------
Confidence 777777777664 34444333333
Q ss_pred hcccccccccccCCCCCcccccccchhHHHHHHhhCCCCCcHHHHHHHHccCHHHHHHHhhCCCchHHHHHHHcCCCCh-
Q 003928 481 FLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQPYVTSITSMEADHVLEAAKDAAGARVIEAYLSSKVSA- 559 (786)
Q Consensus 481 ~L~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~lL~f~~~~~~~~v~sLl~l~~~~l~~La~d~~GS~VIq~lL~s~~~~- 559 (786)
. +.+..|+.|+|||||||++|+...+.
T Consensus 193 ------------------------------------------------~----~~~~~L~~d~~GnyVvQ~~L~~~~~~~ 220 (333)
T 3bwt_A 193 ------------------------------------------------L----ALVDKLTLDPFGNYVVQYIITKEAEKN 220 (333)
T ss_dssp ------------------------------------------------H----TTHHHHHTSTTHHHHHHHHHHHHHHHT
T ss_pred ------------------------------------------------H----HHHHHHhcCChHHHHHHHHHHhCCccc
Confidence 1 12345789999999999999865321
Q ss_pred --HHHHHHHHHHHHhHHHHhcCCCChHHHHHHHhcCCHHHHHHHHHHHHH-----hHhhhhcCCChHHHHHHc
Q 003928 560 --KQKHRVVLKLKGHFGELSVHPSGSFTVERCFTASSLSLRETIASELSA-----VRNELSKTKQGPHLIRKL 625 (786)
Q Consensus 560 --k~r~~Li~~L~g~~~~LA~~k~GS~VVek~~~~~~~~~Ke~I~~eL~~-----~~~~L~~s~~Gr~V~~kl 625 (786)
..+..|+..|.+++.+||+++|||+||++|++.++ .++.|+.+|.. ....|..|+||+||++++
T Consensus 221 ~~~~~~~ii~~l~~~~~~Ls~~k~gs~Vvek~l~~~~--~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~ 291 (333)
T 3bwt_A 221 KYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTAI--VSEPMILEILNNGGETGIQSLLNDSYGNYVLQTA 291 (333)
T ss_dssp CCSHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHTSHH--HHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccc--hhHHHHHHHHhccCchHHHHHHcCChHHHHHHHH
Confidence 24678999999999999999999999999999764 46788888874 567899999999999987
No 10
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=3.5e-32 Score=302.09 Aligned_cols=281 Identities=13% Similarity=0.130 Sum_probs=218.0
Q ss_pred hhHhhhhcCcCccHHHHHHHhhhcCCChHHHH-HHHHHhcCCCCCccCCCccccchhHhHHHhhcCCchhHHHHHHHhhC
Q 003928 296 KDLRTLQTDQYSSLVLQTALRLLVGNDPELLQ-IISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYSHLMEVILEVA 374 (786)
Q Consensus 296 ~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~-ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~d~~gS~vlEk~L~~~ 374 (786)
+.+.+++.|++||.+||..|+.... ++... |...+.+ ....+.+|+.|++|++|+|++|+++
T Consensus 20 G~i~~~a~Dq~Gsr~lQ~~l~~~~~--~~~~~~if~~l~e---------------~~~~~~~L~~d~~Gn~vvQklle~~ 82 (382)
T 3v71_A 20 GQLIDFAIDPSGVKFLEANYPLDSE--DQIRKAVFEKFTE---------------STTLFVGLCHSRNGNFIVQKLVELA 82 (382)
T ss_dssp TCHHHHHHSHHHHHHHHHTSCSCTT--CHHHHHHHHHHHS---------------CHHHHHHHHSSTTHHHHHHHHHHTC
T ss_pred CCEehhccCCcccHHHHHHcccCCh--HHHHHHHHHHHHh---------------hHHHHHHHhcCcHHHHHHHHHHHhC
Confidence 5688999999999999999986542 23332 3333321 1246789999999999999999999
Q ss_pred CHHHHHHHHHHHhHhhHHhhhcCcchhHHHHHHHhhcCCHHHHHHHHHHHHH-hHHHHHhhcCcc-HHHHHHHHHHhhhh
Q 003928 375 PQSLYDEMFTKVFRNSLFDLSSHHCANFVVQALVSHARDQDQMALIWEELGG-KFRELLEMGRSG-VVAALIAASQRLHT 452 (786)
Q Consensus 375 ~~~~~~~i~~~~~~~~l~~La~d~~gNyVVQklLe~~~~~eq~~~i~~eL~~-~l~~L~~~~~~~-Vv~~Lie~c~r~~~ 452 (786)
+++.+..++..++.+++..|+.|.||++|||++|+.++ .++...|+++|.+ ++..|+.+.+.+ |||++++.+..
T Consensus 83 ~~~~~~~li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~-~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~--- 158 (382)
T 3v71_A 83 TPAEQRELLRQMIDGGLLAMCKDKFACRVVQLALQKFD-HSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPV--- 158 (382)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHTSTTHHHHHHHHHHHSC-HHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCT---
T ss_pred CHHHHHHHHHHHhcchHHHHHhCccchHHHHHHHHHCC-HHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCH---
Confidence 99988889988889999999999999999999999996 5678889999997 788998877654 78887774321
Q ss_pred hhHHHHHHHHHhhccCCCcccchhhhhhhcccccccccccCCCCCcccccccchhHHHHHHhhCCCCCcH--------HH
Q 003928 453 HERKCCEALAAAVSSTNVSPRCIVPGILFLESYFSCEDKSNWNWPKGIKIQIIGSLILQAVFRFPSEFIQ--------PY 524 (786)
Q Consensus 453 ~q~~~i~~L~~al~~~~e~~~~iv~~lL~L~~~~~~~~~~~~~~~~~~~~~~~G~~vlQ~lL~f~~~~~~--------~~ 524 (786)
.+. +.|++++... +.+..+ ..+.+||+|+|++|++..+..+ .+
T Consensus 159 ~~~---~~Ii~~~~~~--------~~~~~l------------------a~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~ 209 (382)
T 3v71_A 159 DMW---TFFVHFLSSG--------DSLMAV------------------CQDKYGCRLVQQVIDRLAENPKLPCFKFRIQL 209 (382)
T ss_dssp TTS---HHHHHHHHST--------THHHHH------------------HHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHH
T ss_pred HHH---HHHHHHHhcc--------cchHhH------------------hcCchhhHHHHHHHHhCCHhhhhhhhhHHHHH
Confidence 111 1222332100 012122 3467999999999987654211 23
Q ss_pred HHHHHccCHHHHHHHhhCCCchHHHHHHHcCCCC-hHHHHHHHHH-HHHhHHHHhcCCCChHHHHHHHhcCCHHHHHHHH
Q 003928 525 VTSITSMEADHVLEAAKDAAGARVIEAYLSSKVS-AKQKHRVVLK-LKGHFGELSVHPSGSFTVERCFTASSLSLRETIA 602 (786)
Q Consensus 525 v~sLl~l~~~~l~~La~d~~GS~VIq~lL~s~~~-~k~r~~Li~~-L~g~~~~LA~~k~GS~VVek~~~~~~~~~Ke~I~ 602 (786)
+..|++...+.+..|++|+|||||||++|+.+.+ ++.|..||.. |.+++++||+++|||+|||+||+.++...|..|+
T Consensus 210 l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii 289 (382)
T 3v71_A 210 LHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRDTIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMM 289 (382)
T ss_dssp HHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHHHHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcCchHhHHHHHHHHhCCHHHHHHHH
Confidence 3444444445678999999999999999998764 4578899975 9999999999999999999999999999999999
Q ss_pred HHHHH-----------hHhhhhcCCChHHHHHHcc
Q 003928 603 SELSA-----------VRNELSKTKQGPHLIRKLD 626 (786)
Q Consensus 603 ~eL~~-----------~~~~L~~s~~Gr~V~~kl~ 626 (786)
+||.. ....|..|+||+||++++.
T Consensus 290 ~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L 324 (382)
T 3v71_A 290 EEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMI 324 (382)
T ss_dssp HHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHH
T ss_pred HHHHhhccccccccchHHHHHHCCCCccHHHHHHH
Confidence 99985 4567999999999999873
No 11
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=31.48 E-value=3.4e+02 Score=27.66 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=21.5
Q ss_pred hHHHHHHHcCCC--ChHHHHHHHHHHHHhHHHHhcC-CCChHHHHHH
Q 003928 546 ARVIEAYLSSKV--SAKQKHRVVLKLKGHFGELSVH-PSGSFTVERC 589 (786)
Q Consensus 546 S~VIq~lL~s~~--~~k~r~~Li~~L~g~~~~LA~~-k~GS~VVek~ 589 (786)
--|+|+++.... .+.....++..+.+.-..++.+ +||..|+.-+
T Consensus 179 ~~Vlq~lL~~k~~L~~~~i~~Lv~~L~~~a~~~skSlkFakLll~~i 225 (264)
T 2ilr_A 179 FLVLQSLLERQVEMTPEKFSVLMEKLCKKGLAATTSMAYAKLMLTVM 225 (264)
T ss_dssp HHHHHHHHTTCCCCCHHHHHHHHHHHHC-----CCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhHHhhcccHHHHHHHHHH
Confidence 456666666543 2455566666666666666655 4555554433
No 12
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=28.88 E-value=4.7e+02 Score=26.47 Aligned_cols=108 Identities=19% Similarity=0.089 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhhhHhhhhcCcCccHHHHHHHhhhcCCChHHHHHHHHHhcCCCCCccCCCccccchhHhHHHhhcCCchh
Q 003928 285 FLISGILASSRKDLRTLQTDQYSSLVLQTALRLLVGNDPELLQIISILLGSNKDNVVEGNFIPMTVVHDVLNLMKETAYS 364 (786)
Q Consensus 285 ~l~~~ll~~~~~~i~~L~~d~~gs~VLQ~lLe~~~~~~~~l~~ii~~ll~~~~~~~~e~~f~~~~~~~~i~~l~~d~~gS 364 (786)
++.+.+.+|--.++.+++...- -.++.+++.++.+|+.+. + .+=
T Consensus 11 ~lre~L~sWkiK~a~ela~~~e--~~l~~L~~LL~dkD~~vk--~--------------------------------raL 54 (265)
T 3b2a_A 11 ELRELVLSWQILDAVSLALEDK--RALFLILELAGEDDETTR--L--------------------------------RAF 54 (265)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCH--HHHHHHHHHTTSSCHHHH--H--------------------------------HHH
T ss_pred HHHHHHHHhhHHHHHHHHHhch--hHHHHHHHHHhccchHHH--H--------------------------------HHH
Confidence 4555666663334444443222 267777777776666542 1 112
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHhHhhHHhhhcCcc------hhHHHHHHHhhcC-CHHHHHHHHHHHHHhHHHHHh
Q 003928 365 HLMEVILEVAPQSLYDEMFTKVFRNSLFDLSSHHC------ANFVVQALVSHAR-DQDQMALIWEELGGKFRELLE 433 (786)
Q Consensus 365 ~vlEk~L~~~~~~~~~~i~~~~~~~~l~~La~d~~------gNyVVQklLe~~~-~~eq~~~i~~eL~~~l~~L~~ 433 (786)
.++|.+|+.++......+++++| +.+..++.+.. |--++-.+++..+ +++++..+.+.| .++++
T Consensus 55 ~~LeellK~~~~~l~~~~~e~~L-d~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y~Kl~~aL----~dlik 125 (265)
T 3b2a_A 55 VALGEILKRADSDLRMMVLERHL-DVFINALSQENEKVTIKALRALGYLVKDVPMGSKTFLKAAKTL----VSLLE 125 (265)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHH-HHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH----HHHTT
T ss_pred HHHHHHHHhccccccHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHHhc
Confidence 46788888888888888888776 77778886664 3445666677665 466676666665 45555
No 13
>2xes_A Protein PAT1 homolog 1; mRNA decapping, P-bodies, RNA binding protein; 2.10A {Homo sapiens} PDB: 2xer_A 2xeq_A
Probab=23.53 E-value=2e+02 Score=29.02 Aligned_cols=116 Identities=15% Similarity=0.157 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhhhccc-----------hhhhccCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHhHhhcCcchhHHHHH
Q 003928 116 EERSVLCRNALEETRGK-----------ELELATDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFPAIAMDRSGSHVAET 184 (786)
Q Consensus 116 EEr~~~v~nvleEi~Gk-----------el~La~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~~L~~d~fGShVlQk 184 (786)
|.+...++..+++++.. .+.+.+-+-|=++|-+++..-+.+|...++..+..|+..|...--.-.|+..
T Consensus 45 e~~~~~~~~L~~sL~~~~p~~~~~~~~~Fi~~Lsv~KGKkLl~Rll~~L~~~q~~til~~I~~~L~~Li~~d~~d~vL~~ 124 (248)
T 2xes_A 45 DDRKHKICSMYDNLRGKLPGQERPSDDHFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPC 124 (248)
T ss_dssp HHHHHHHHHHHHHHHCCCTTCSSCCSHHHHHHHTSHHHHHHHHHHGGGSCHHHHHHHHHHHHHTHHHHHHHTTTTCCGGG
T ss_pred HHHHHHHHHHHHHhcccCCCCCcCCCCceeeeeehHhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhhcCCchhHHHH
Confidence 44555566777666443 3556777888899999999999999999999999988888533223356666
Q ss_pred HHHHhHHhhhhhhhhhhHHHHHHHHHHHH-----HcCchhhhccCCcchHHHHHHHH
Q 003928 185 ALKSLAMHLQDEHAHSIIEETLKSICKVI-----VANPVDVMCNCYGSHVLRSLLCL 236 (786)
Q Consensus 185 LL~~~~~~~~~e~~~~~~ee~l~~i~~~l-----~~nl~~Li~D~~gSHVlR~lL~~ 236 (786)
++......+.. -.+.+++. +...+ ..++.-++++++|--+|-.+|..
T Consensus 125 L~~~~~~~I~~----~~l~~l~~-~l~~Ll~~~~~~~l~~v~~~k~GlSlLt~LLsR 176 (248)
T 2xes_A 125 LLSPFSLLLYH----LPSVSITS-LLRQLMNLPGSPHLTAVLQNKFGLSLLLILLSR 176 (248)
T ss_dssp GHHHHHHHHTT----CCHHHHHH-HHHHHTSSTTTTCCHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCHHHHHH-HHHHHHhccCCccceeeeecCchHHHHHHHHHH
Confidence 66655443321 11223332 22223 13667777788888877777754
No 14
>3rfi_A Asp; PSI, saposin, hydrolase; 1.90A {Solanum tuberosum}
Probab=21.38 E-value=57 Score=28.55 Aligned_cols=74 Identities=16% Similarity=0.168 Sum_probs=44.5
Q ss_pred cCCchhHHHHHHhcCCCHHHHHHHHHHHhhhHh---------------Hhh--cCcchhHHHHHHHHHhHHhhhhhhhhh
Q 003928 138 TDYIISHTLQTLLEGCDVDHLCSFLRGCAKVFP---------------AIA--MDRSGSHVAETALKSLAMHLQDEHAHS 200 (786)
Q Consensus 138 ~dq~gSrvLEkLl~~~~~eql~~~l~~l~~~~~---------------~L~--~d~fGShVlQkLL~~~~~~~~~e~~~~ 200 (786)
-|+++-.+++.|+...+|..++..+.-+..+-. ..+ .+...+-+++.++..+...+++...-.
T Consensus 15 V~~Y~~~ii~~l~~~~~P~~iC~~lglC~~~~~~~~~~~i~~vv~~~~~~~~~~~~~~C~~Ce~~V~~ie~~L~~N~Te~ 94 (108)
T 3rfi_A 15 VSQYGEMIWDLLVSGVRPDQVCSQAGLCFVDGAQHVSSNIKTVVERETEGSSVGEAPLCTACEMAVVWMQNQLKQEGTKE 94 (108)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHTTSSCC------------------------CCHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHcCCcCCCcccccccccccccccccccccCCCCCcChhHHHHHHHHHHHHhcCchHH
Confidence 477888888888888888888877654432110 111 145667788888887776665544333
Q ss_pred hHHHHHHHHHH
Q 003928 201 IIEETLKSICK 211 (786)
Q Consensus 201 ~~ee~l~~i~~ 211 (786)
.+.+.|.++|+
T Consensus 95 eI~~~l~k~C~ 105 (108)
T 3rfi_A 95 KVLEYVNQLCE 105 (108)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 34444445543
Done!