Query 003929
Match_columns 786
No_of_seqs 340 out of 836
Neff 4.2
Searched_HMMs 46136
Date Thu Mar 28 14:29:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003929.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003929hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02436 cellulose synthase A 100.0 2E-254 5E-259 2176.1 57.4 782 1-786 1-789 (1094)
2 PLN02400 cellulose synthase 100.0 1E-252 2E-257 2169.1 55.4 763 1-786 1-778 (1085)
3 PLN02638 cellulose synthase A 100.0 1E-239 2E-244 2059.3 54.4 748 23-786 4-773 (1079)
4 PLN02189 cellulose synthase 100.0 1E-231 3E-236 1987.0 53.1 726 1-786 1-734 (1040)
5 PLN02915 cellulose synthase A 100.0 2E-230 4E-235 1978.0 51.5 697 31-786 10-737 (1044)
6 PLN02195 cellulose synthase A 100.0 2E-212 5E-217 1818.7 49.8 663 33-786 3-669 (977)
7 PLN02248 cellulose synthase-li 100.0 3E-187 7E-192 1618.6 47.2 662 4-786 89-832 (1135)
8 PLN02190 cellulose synthase-li 100.0 9E-144 2E-148 1226.6 37.3 445 270-786 7-455 (756)
9 PF03552 Cellulose_synt: Cellu 100.0 2E-144 4E-149 1229.6 28.0 415 368-786 1-419 (720)
10 PLN02893 Cellulose synthase-li 100.0 7E-137 2E-141 1173.8 37.1 427 269-786 9-442 (734)
11 PF14569 zf-UDP: Zinc-binding 100.0 1.1E-44 2.3E-49 312.8 4.4 80 28-107 1-80 (80)
12 TIGR03030 CelA cellulose synth 100.0 3.8E-34 8.2E-39 332.5 21.3 255 289-660 57-327 (713)
13 PRK11498 bcsA cellulose syntha 100.0 1.3E-33 2.8E-38 331.9 20.8 236 291-661 189-439 (852)
14 cd04191 Glucan_BSP_ModH Glucan 99.9 7.9E-22 1.7E-26 204.3 13.7 110 533-655 67-183 (254)
15 PRK05454 glucosyltransferase M 99.8 3.7E-20 8E-25 215.5 20.1 250 287-656 40-309 (691)
16 COG1215 Glycosyltransferases, 99.7 1.3E-17 2.9E-22 179.3 15.6 169 365-655 53-226 (439)
17 cd06421 CESA_CelA_like CESA_Ce 99.6 3.6E-15 7.9E-20 145.8 12.9 168 366-655 1-172 (234)
18 PRK14583 hmsR N-glycosyltransf 99.6 9.5E-15 2.1E-19 161.5 16.4 170 364-661 73-251 (444)
19 cd06437 CESA_CaSu_A2 Cellulose 99.5 1.2E-13 2.7E-18 137.0 15.5 175 366-660 1-182 (232)
20 TIGR03111 glyc2_xrt_Gpos1 puta 99.5 6.7E-13 1.5E-17 147.0 17.2 122 363-608 46-168 (439)
21 PRK11204 N-glycosyltransferase 99.5 5.8E-13 1.3E-17 144.8 15.9 171 363-661 51-230 (420)
22 cd06427 CESA_like_2 CESA_like_ 99.4 7.8E-13 1.7E-17 132.8 13.1 174 366-660 1-181 (241)
23 cd06435 CESA_NdvC_like NdvC_li 99.4 2.4E-12 5.2E-17 127.4 15.2 109 535-655 58-170 (236)
24 PF13641 Glyco_tranf_2_3: Glyc 99.4 1.1E-13 2.4E-18 135.9 3.2 172 366-660 1-179 (228)
25 cd06436 GlcNAc-1-P_transferase 99.4 1.8E-12 4E-17 126.6 11.5 115 535-656 52-176 (191)
26 PRK14716 bacteriophage N4 adso 99.3 1.1E-11 2.3E-16 140.9 15.3 171 364-656 64-245 (504)
27 TIGR03472 HpnI hopanoid biosyn 99.3 8.9E-11 1.9E-15 127.3 16.4 171 364-659 39-219 (373)
28 cd06438 EpsO_like EpsO protein 99.2 4.4E-11 9.6E-16 115.2 11.6 105 549-660 62-174 (183)
29 PRK11234 nfrB bacteriophage N4 99.2 1.7E-10 3.6E-15 136.1 13.9 97 549-652 132-239 (727)
30 cd04192 GT_2_like_e Subfamily 99.1 2E-10 4.3E-15 111.7 10.7 103 549-660 68-175 (229)
31 cd06434 GT2_HAS Hyaluronan syn 99.1 4.8E-10 1E-14 110.5 12.2 98 549-656 63-165 (235)
32 cd02520 Glucosylceramide_synth 99.1 7E-10 1.5E-14 108.3 11.5 65 549-655 72-136 (196)
33 cd06439 CESA_like_1 CESA_like_ 99.1 1.5E-09 3.2E-14 108.6 14.1 169 362-659 25-197 (251)
34 PF14570 zf-RING_4: RING/Ubox 99.0 1.3E-10 2.9E-15 93.9 2.9 48 39-89 1-48 (48)
35 cd04190 Chitin_synth_C C-termi 99.0 5.4E-10 1.2E-14 113.8 8.0 87 566-658 72-164 (244)
36 TIGR03469 HonB hopene-associat 98.9 1.6E-08 3.6E-13 110.4 14.8 133 362-608 36-169 (384)
37 PRK15489 nfrB bacteriophage N4 98.9 2E-08 4.2E-13 118.3 15.4 98 549-655 140-249 (703)
38 cd06423 CESA_like CESA_like is 98.9 3.5E-08 7.5E-13 89.1 12.8 106 535-655 55-166 (180)
39 cd04184 GT2_RfbC_Mx_like Myxoc 98.8 3.8E-08 8.1E-13 94.7 12.9 165 366-660 1-169 (202)
40 cd04196 GT_2_like_d Subfamily 98.8 3E-08 6.4E-13 95.6 11.3 99 549-657 65-166 (214)
41 PF00535 Glycos_transf_2: Glyc 98.8 6.2E-09 1.3E-13 94.5 6.1 110 534-655 54-165 (169)
42 cd04195 GT2_AmsE_like GT2_AmsE 98.8 7.2E-08 1.6E-12 92.9 13.2 102 535-655 57-162 (201)
43 cd02525 Succinoglycan_BP_ExoA 98.8 8E-08 1.7E-12 94.7 12.4 116 368-608 2-117 (249)
44 cd06433 GT_2_WfgS_like WfgS an 98.6 2.9E-07 6.3E-12 87.0 11.1 92 550-655 62-154 (202)
45 cd06442 DPM1_like DPM1_like re 98.5 4.8E-07 1E-11 88.5 10.8 99 550-658 65-166 (224)
46 PLN02726 dolichyl-phosphate be 98.5 1.1E-06 2.4E-11 89.1 13.5 109 535-658 70-181 (243)
47 cd06420 GT2_Chondriotin_Pol_N 98.5 1.5E-06 3.4E-11 82.3 12.3 78 550-660 66-146 (182)
48 cd04179 DPM_DPG-synthase_like 98.5 8.4E-07 1.8E-11 84.1 10.2 108 535-657 56-165 (185)
49 cd04186 GT_2_like_c Subfamily 98.4 1.4E-06 3E-11 80.1 10.2 65 550-656 61-125 (166)
50 cd02522 GT_2_like_a GT_2_like_ 98.4 3.9E-06 8.6E-11 81.9 12.3 40 368-413 1-40 (221)
51 cd02510 pp-GalNAc-T pp-GalNAc- 98.3 4.7E-06 1E-10 87.2 12.5 109 370-595 2-110 (299)
52 cd04185 GT_2_like_b Subfamily 98.3 6.1E-06 1.3E-10 80.1 11.3 46 550-597 63-108 (202)
53 cd02526 GT2_RfbF_like RfbF is 98.3 5E-06 1.1E-10 82.2 10.9 115 535-660 49-171 (237)
54 cd04187 DPM1_like_bac Bacteria 98.2 6.5E-06 1.4E-10 78.7 9.6 101 535-655 57-159 (181)
55 cd04188 DPG_synthase DPG_synth 98.0 2.2E-05 4.8E-10 77.2 8.7 53 550-611 69-121 (211)
56 cd06913 beta3GnTL1_like Beta 1 98.0 5.4E-05 1.2E-09 74.9 11.4 42 549-595 70-111 (219)
57 PRK10018 putative glycosyl tra 97.9 8E-05 1.7E-09 79.2 11.1 43 364-412 3-45 (279)
58 PTZ00260 dolichyl-phosphate be 97.9 0.00026 5.7E-09 76.9 14.6 41 550-595 149-189 (333)
59 PRK10073 putative glycosyl tra 97.8 0.00013 2.7E-09 79.0 11.8 44 364-413 4-47 (328)
60 cd00761 Glyco_tranf_GTA_type G 97.8 0.00025 5.5E-09 62.5 10.9 51 549-608 63-114 (156)
61 COG2943 MdoH Membrane glycosyl 97.7 0.0037 8E-08 72.1 21.7 105 547-660 222-336 (736)
62 PF13632 Glyco_trans_2_3: Glyc 97.6 4E-05 8.7E-10 74.4 3.8 83 570-659 1-91 (193)
63 TIGR01556 rhamnosyltran L-rham 97.6 0.0005 1.1E-08 71.2 11.9 111 534-655 46-160 (281)
64 PRK13915 putative glucosyl-3-p 97.5 0.00043 9.3E-09 74.5 10.5 50 550-607 102-152 (306)
65 PF10111 Glyco_tranf_2_2: Glyc 97.2 0.0024 5.1E-08 67.4 10.6 108 549-662 74-190 (281)
66 PF13506 Glyco_transf_21: Glyc 97.2 0.00047 1E-08 68.5 5.0 95 548-655 15-113 (175)
67 PRK10063 putative glycosyl tra 97.0 0.0033 7.1E-08 65.5 10.0 44 366-413 1-45 (248)
68 COG0463 WcaA Glycosyltransfera 96.8 0.01 2.2E-07 52.5 9.8 43 365-413 2-44 (291)
69 PRK10714 undecaprenyl phosphat 96.8 0.012 2.6E-07 63.9 11.9 40 550-594 77-116 (325)
70 COG5175 MOT2 Transcriptional r 96.7 0.00081 1.8E-08 73.5 1.9 48 38-88 16-63 (480)
71 cd02511 Beta4Glucosyltransfera 96.0 0.046 1E-06 55.4 10.3 42 550-596 58-99 (229)
72 cd02514 GT13_GLCNAC-TI GT13_GL 95.7 0.11 2.3E-06 57.6 12.3 88 549-660 84-176 (334)
73 PF14446 Prok-RING_1: Prokaryo 95.6 0.0086 1.9E-07 50.2 2.4 45 36-88 5-51 (54)
74 COG1216 Predicted glycosyltran 95.5 0.17 3.7E-06 54.0 12.4 70 533-613 56-126 (305)
75 TIGR00570 cdk7 CDK-activating 95.2 0.02 4.3E-07 62.7 4.5 55 36-92 3-57 (309)
76 cd00162 RING RING-finger (Real 89.2 0.4 8.8E-06 35.6 3.0 44 38-87 1-44 (45)
77 PF05290 Baculo_IE-1: Baculovi 88.0 0.32 7E-06 47.8 2.2 53 36-92 80-135 (140)
78 KOG2978 Dolichol-phosphate man 80.5 8.6 0.00019 40.5 8.6 51 533-593 63-113 (238)
79 smart00504 Ubox Modified RING 80.0 2 4.3E-05 35.3 3.3 44 38-89 3-46 (63)
80 PF03142 Chitin_synth_2: Chiti 77.7 32 0.00069 40.9 13.2 41 365-408 24-65 (527)
81 PRK14559 putative protein seri 77.2 1.2 2.5E-05 53.6 1.5 23 66-89 30-52 (645)
82 KOG0823 Predicted E3 ubiquitin 75.6 2.7 5.9E-05 44.7 3.5 46 36-89 47-95 (230)
83 PHA02862 5L protein; Provision 74.3 2.3 4.9E-05 42.6 2.4 49 36-90 2-54 (156)
84 PHA02929 N1R/p28-like protein; 73.7 3.9 8.5E-05 43.7 4.2 55 34-89 172-227 (238)
85 smart00659 RPOLCX RNA polymera 73.1 2.3 4.9E-05 34.4 1.7 27 37-65 3-29 (44)
86 PF03966 Trm112p: Trm112p-like 73.0 0.85 1.8E-05 39.3 -0.8 26 67-92 42-67 (68)
87 PF13639 zf-RING_2: Ring finge 72.1 3 6.6E-05 32.5 2.2 43 38-85 2-44 (44)
88 PF03604 DNA_RNApol_7kD: DNA d 71.0 3 6.5E-05 31.7 1.9 26 38-65 2-27 (32)
89 PF14447 Prok-RING_4: Prokaryo 70.7 1.9 4.2E-05 36.6 0.8 46 36-91 7-52 (55)
90 KOG3800 Predicted E3 ubiquitin 68.5 3.9 8.4E-05 44.9 2.8 52 38-91 2-53 (300)
91 PF02318 FYVE_2: FYVE-type zin 68.1 1 2.3E-05 42.6 -1.4 48 34-84 52-100 (118)
92 smart00184 RING Ring finger. E 66.1 5.9 0.00013 28.1 2.5 39 39-84 1-39 (39)
93 PF03452 Anp1: Anp1; InterPro 66.1 73 0.0016 35.0 11.8 39 552-591 128-166 (269)
94 PLN03208 E3 ubiquitin-protein 64.7 6.7 0.00014 40.9 3.5 52 31-89 13-79 (193)
95 KOG2068 MOT2 transcription fac 64.2 5.1 0.00011 44.6 2.8 52 36-91 249-300 (327)
96 PHA02825 LAP/PHD finger-like p 63.0 6 0.00013 40.2 2.7 51 35-91 7-61 (162)
97 KOG2932 E3 ubiquitin ligase in 62.5 5 0.00011 44.6 2.2 45 49-93 84-138 (389)
98 KOG0006 E3 ubiquitin-protein l 59.0 7.6 0.00016 43.3 2.9 63 31-94 310-413 (446)
99 PRK00420 hypothetical protein; 58.9 4.1 9E-05 39.1 0.8 29 56-90 24-52 (112)
100 PF14471 DUF4428: Domain of un 58.8 5.3 0.00011 33.2 1.3 28 38-71 1-28 (51)
101 smart00249 PHD PHD zinc finger 56.0 7.6 0.00016 29.2 1.7 43 38-84 1-47 (47)
102 PF00097 zf-C3HC4: Zinc finger 54.6 9.9 0.00022 28.9 2.1 40 39-84 1-41 (41)
103 PF13920 zf-C3HC4_3: Zinc fing 53.9 13 0.00028 29.8 2.7 45 38-90 4-49 (50)
104 PF13923 zf-C3HC4_2: Zinc fing 53.7 12 0.00027 28.5 2.5 39 39-84 1-39 (39)
105 COG5114 Histone acetyltransfer 53.5 4.7 0.0001 44.9 0.2 36 38-77 7-43 (432)
106 PRK00398 rpoP DNA-directed RNA 52.0 9.9 0.00021 30.4 1.8 27 38-65 5-31 (46)
107 smart00291 ZnF_ZZ Zinc-binding 51.3 13 0.00029 29.5 2.4 36 36-76 4-40 (44)
108 PRK15103 paraquat-inducible me 50.4 12 0.00026 42.9 2.9 30 53-91 219-248 (419)
109 PF13712 Glyco_tranf_2_5: Glyc 50.2 48 0.001 34.5 7.0 44 550-597 41-85 (217)
110 PF07282 OrfB_Zn_ribbon: Putat 50.1 11 0.00025 31.9 2.0 33 35-68 27-59 (69)
111 KOG2977 Glycosyltransferase [G 48.3 95 0.0021 34.8 9.0 42 551-596 145-188 (323)
112 TIGR00155 pqiA_fam integral me 48.0 11 0.00024 43.1 2.0 30 54-91 214-243 (403)
113 PRK04023 DNA polymerase II lar 47.6 12 0.00026 47.2 2.4 45 34-89 624-674 (1121)
114 cd02249 ZZ Zinc finger, ZZ typ 46.6 16 0.00034 29.3 2.2 31 38-73 2-33 (46)
115 PRK07220 DNA topoisomerase I; 45.6 11 0.00024 46.1 1.7 48 37-86 590-643 (740)
116 PRK12495 hypothetical protein; 45.3 11 0.00024 40.1 1.5 30 54-90 41-70 (226)
117 cd02335 ZZ_ADA2 Zinc finger, Z 44.8 18 0.00039 29.5 2.3 30 38-71 2-32 (49)
118 COG0551 TopA Zn-finger domain 44.3 15 0.00032 35.6 2.1 49 34-86 15-68 (140)
119 KOG2547 Ceramide glucosyltrans 43.9 4.2E+02 0.0091 31.0 13.3 97 548-655 155-256 (431)
120 PF13896 Glyco_transf_49: Glyc 43.0 22 0.00048 39.2 3.4 40 566-606 126-165 (317)
121 KOG3737 Predicted polypeptide 43.0 62 0.0013 37.6 6.8 44 362-409 151-195 (603)
122 KOG0457 Histone acetyltransfer 42.7 11 0.00023 43.6 0.9 50 36-92 14-64 (438)
123 PF07649 C1_3: C1-like domain; 41.5 16 0.00034 26.8 1.3 28 38-69 2-29 (30)
124 KOG2068 MOT2 transcription fac 39.3 12 0.00027 41.8 0.7 30 62-91 1-32 (327)
125 PHA02926 zinc finger-like prot 39.2 33 0.00072 36.9 3.8 61 34-94 168-235 (242)
126 COG1996 RPC10 DNA-directed RNA 39.1 16 0.00034 30.6 1.2 29 36-65 6-34 (49)
127 PF09484 Cas_TM1802: CRISPR-as 38.1 17 0.00037 43.2 1.6 41 33-73 195-251 (593)
128 TIGR02443 conserved hypothetic 37.9 22 0.00047 30.9 1.8 31 34-64 7-40 (59)
129 PF14634 zf-RING_5: zinc-RING 37.8 33 0.00072 26.9 2.8 43 39-86 2-44 (44)
130 COG4739 Uncharacterized protei 37.5 18 0.00039 36.6 1.5 45 45-89 77-121 (182)
131 PF00628 PHD: PHD-finger; Int 36.3 27 0.00059 27.7 2.1 45 38-86 1-50 (51)
132 PRK04296 thymidine kinase; Pro 36.3 18 0.00038 36.6 1.3 35 37-71 141-186 (190)
133 cd00350 rubredoxin_like Rubred 35.9 13 0.00028 28.0 0.2 18 72-89 11-28 (33)
134 PRK11827 hypothetical protein; 35.9 25 0.00053 30.5 1.8 32 64-95 12-43 (60)
135 PRK03982 heat shock protein Ht 35.6 1.2E+02 0.0026 32.8 7.5 67 330-409 49-115 (288)
136 PRK07219 DNA topoisomerase I; 35.1 22 0.00048 44.1 2.1 53 36-91 688-746 (822)
137 TIGR00599 rad18 DNA repair pro 35.0 32 0.00069 39.6 3.1 53 29-89 18-71 (397)
138 KOG1941 Acetylcholine receptor 34.9 13 0.00028 42.6 -0.0 70 35-106 364-438 (518)
139 PF06906 DUF1272: Protein of u 34.5 42 0.0009 29.0 2.9 48 37-90 6-53 (57)
140 PF01155 HypA: Hydrogenase exp 34.4 8.3 0.00018 36.5 -1.3 30 55-91 70-99 (113)
141 PRK12380 hydrogenase nickel in 33.5 12 0.00027 35.4 -0.3 27 55-88 70-96 (113)
142 PRK14973 DNA topoisomerase I; 33.4 28 0.00061 44.0 2.6 48 37-87 589-644 (936)
143 PF00265 TK: Thymidine kinase; 33.2 14 0.00031 37.4 0.0 34 37-70 138-176 (176)
144 cd02336 ZZ_RSC8 Zinc finger, Z 32.5 34 0.00074 27.9 2.1 33 38-75 2-35 (45)
145 PRK00564 hypA hydrogenase nick 32.5 16 0.00035 34.9 0.2 28 56-90 72-100 (117)
146 PRK14890 putative Zn-ribbon RN 32.0 58 0.0013 28.3 3.4 49 36-86 7-56 (59)
147 PRK11595 DNA utilization prote 31.7 28 0.00061 36.3 1.9 38 37-87 6-43 (227)
148 COG2191 Formylmethanofuran deh 30.6 27 0.0006 36.8 1.6 26 36-71 172-201 (206)
149 PF11238 DUF3039: Protein of u 29.9 17 0.00037 31.4 -0.1 12 79-90 45-56 (58)
150 PF08274 PhnA_Zn_Ribbon: PhnA 28.9 23 0.00049 26.8 0.5 25 37-63 3-27 (30)
151 cd00730 rubredoxin Rubredoxin; 28.9 17 0.00036 30.3 -0.3 7 80-86 36-42 (50)
152 KOG0311 Predicted E3 ubiquitin 28.8 15 0.00033 41.5 -0.7 45 38-88 45-89 (381)
153 PRK14873 primosome assembly pr 28.8 39 0.00085 41.2 2.6 11 78-88 422-432 (665)
154 PTZ00293 thymidine kinase; Pro 28.7 27 0.00058 36.9 1.1 35 37-71 138-177 (211)
155 TIGR01206 lysW lysine biosynth 28.1 41 0.00089 28.6 1.9 13 38-50 4-16 (54)
156 PRK03681 hypA hydrogenase nick 27.8 21 0.00046 34.0 0.2 27 56-89 71-98 (114)
157 TIGR00155 pqiA_fam integral me 27.7 42 0.0009 38.5 2.5 35 54-92 12-47 (403)
158 PF13240 zinc_ribbon_2: zinc-r 27.6 17 0.00036 25.7 -0.4 13 75-87 10-22 (23)
159 PF13248 zf-ribbon_3: zinc-rib 27.5 17 0.00037 26.1 -0.4 15 73-87 11-25 (26)
160 KOG2824 Glutaredoxin-related p 27.5 37 0.0008 37.4 1.9 22 33-62 226-247 (281)
161 TIGR00100 hypA hydrogenase nic 27.4 24 0.00053 33.6 0.5 20 71-90 79-98 (115)
162 PF11781 RRN7: RNA polymerase 27.4 34 0.00073 26.7 1.2 23 39-63 11-33 (36)
163 PF04641 Rtf2: Rtf2 RING-finge 27.0 52 0.0011 35.3 2.9 51 34-90 111-162 (260)
164 COG2888 Predicted Zn-ribbon RN 26.9 59 0.0013 28.4 2.6 48 36-85 9-57 (61)
165 PF07754 DUF1610: Domain of un 26.2 52 0.0011 23.9 1.9 24 39-63 1-24 (24)
166 PF12773 DZR: Double zinc ribb 26.2 44 0.00095 26.7 1.7 12 36-47 12-23 (50)
167 COG4391 Uncharacterized protei 25.8 27 0.00058 30.6 0.4 17 74-90 44-60 (62)
168 KOG2177 Predicted E3 ubiquitin 25.8 35 0.00076 34.1 1.3 43 36-86 13-55 (386)
169 TIGR00595 priA primosomal prot 25.7 33 0.00072 40.2 1.3 50 48-97 205-259 (505)
170 PRK06319 DNA topoisomerase I/S 25.6 40 0.00086 42.3 2.0 56 35-93 591-660 (860)
171 PF03884 DUF329: Domain of unk 25.5 42 0.0009 28.9 1.5 33 75-107 15-53 (57)
172 PF09526 DUF2387: Probable met 25.4 46 0.001 29.6 1.8 31 34-64 6-39 (71)
173 PF00643 zf-B_box: B-box zinc 25.1 47 0.001 25.5 1.6 31 36-73 3-33 (42)
174 KOG3507 DNA-directed RNA polym 24.8 33 0.00072 29.9 0.8 28 36-65 20-47 (62)
175 TIGR02556 cas_TM1802 CRISPR-as 24.3 46 0.001 39.8 2.1 41 36-77 170-222 (555)
176 KOG3623 Homeobox transcription 24.2 39 0.00084 41.7 1.4 47 42-94 266-324 (1007)
177 cd00065 FYVE FYVE domain; Zinc 24.1 36 0.00079 27.6 0.9 38 36-76 2-39 (57)
178 TIGR03830 CxxCG_CxxCG_HTH puta 24.0 32 0.00069 32.0 0.6 40 39-88 1-41 (127)
179 COG0551 TopA Zn-finger domain 23.8 33 0.00072 33.2 0.7 52 34-89 58-112 (140)
180 cd03031 GRX_GRX_like Glutaredo 23.0 40 0.00086 33.6 1.1 43 35-86 98-141 (147)
181 PRK08359 transcription factor; 22.9 28 0.00061 35.9 0.0 34 37-74 7-42 (176)
182 PRK09382 ispDF bifunctional 2- 22.8 1.6E+02 0.0034 33.6 5.9 56 553-612 85-159 (378)
183 PRK06393 rpoE DNA-directed RNA 22.7 38 0.00083 29.8 0.8 23 54-87 4-26 (64)
184 PF14354 Lar_restr_allev: Rest 22.6 56 0.0012 27.1 1.7 26 38-63 5-37 (61)
185 smart00744 RINGv The RING-vari 22.5 1.1E+02 0.0023 25.2 3.3 45 38-85 1-49 (49)
186 PRK03824 hypA hydrogenase nick 22.3 28 0.0006 34.1 -0.2 11 77-87 106-116 (135)
187 PF03107 C1_2: C1 domain; Int 22.2 58 0.0013 24.0 1.6 28 38-69 2-29 (30)
188 PF13719 zinc_ribbon_5: zinc-r 22.0 37 0.00081 26.3 0.5 11 80-90 4-14 (37)
189 KOG3736 Polypeptide N-acetylga 21.7 1.2E+02 0.0025 36.8 4.7 48 363-413 139-186 (578)
190 TIGR02302 aProt_lowcomp conser 21.7 1.6E+02 0.0035 37.2 6.1 40 314-354 44-83 (851)
191 PF14446 Prok-RING_1: Prokaryo 21.5 27 0.0006 29.8 -0.3 16 75-90 18-33 (54)
192 PRK14714 DNA polymerase II lar 21.2 47 0.001 43.2 1.5 48 37-91 668-722 (1337)
193 PRK15103 paraquat-inducible me 21.0 46 0.001 38.4 1.2 33 56-92 11-44 (419)
194 COG0068 HypF Hydrogenase matur 20.6 78 0.0017 39.1 3.0 60 34-93 99-190 (750)
195 PF13717 zinc_ribbon_4: zinc-r 20.6 41 0.0009 26.0 0.5 11 80-90 4-14 (36)
196 PRK05582 DNA topoisomerase I; 20.5 62 0.0013 39.2 2.2 51 36-90 571-623 (650)
197 PRK07726 DNA topoisomerase III 20.1 65 0.0014 39.1 2.3 46 36-86 610-657 (658)
No 1
>PLN02436 cellulose synthase A
Probab=100.00 E-value=2.5e-254 Score=2176.10 Aligned_cols=782 Identities=84% Similarity=1.393 Sum_probs=717.6
Q ss_pred CCCCCcccccccCCceEEEeecccccccccccccCCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCc
Q 003929 1 MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (786)
Q Consensus 1 Me~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~ 80 (786)
||+++|||||||||||||+|+.|++.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 m~~~~~~~~gs~~r~e~~~~~~d~~~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~ 80 (1094)
T PLN02436 1 MNTGGRLIAGSHNRNEFVLINADEIARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQA 80 (1094)
T ss_pred CCcccccccccccccceeEeccccccCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence 99999999999999999999999766678999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCCCCCCCCCCccccccccccCC-CCCchhhhhhhhhhhcccCCCCCccccCccCCCccccccccC
Q 003929 81 CPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDIND-RKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQ 159 (786)
Q Consensus 81 CPqCkt~Ykr~kGsprV~Gd~ee~~~dd~e~ef~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 159 (786)
|||||||||||||||||+||||||++||+||||+|.. +++.++++|+|+||+|++|++.+.....+..+. ++....+
T Consensus 81 Cpqckt~Y~r~kgs~~~~~d~ee~~~dd~e~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 158 (1094)
T PLN02436 81 CPQCKTRYKRIKGSPRVEGDEEEDDIDDLENEFDYGNNGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSEL--DSAPPGS 158 (1094)
T ss_pred CcccCCchhhccCCCCcCCccccccchhhhhhhcCcccccchHHHHHHHhhhhcccCcccccccccccccc--ccCCCcC
Confidence 9999999999999999999999999999999999872 233477899999999999998763211000011 1111125
Q ss_pred CCcccccCC--CCCCCCCcCcccccCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccccCCCccccchhhHHHHHhhh
Q 003929 160 EIPLLTYGN--EDVGISSDKHALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQN 237 (786)
Q Consensus 160 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~yg~g~~~w~~~~~~wk~~~~ 237 (786)
++|+|++++ ++++ +++|++++++.+|.||||||+||+++++++++|.|||+||+++||||||+||||||+||+||+
T Consensus 159 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~ 236 (1094)
T PLN02436 159 QIPLLTYGEEDVEIS--SDRHALIVPPSTGHGNRVHPMPFPDSSASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQN 236 (1094)
T ss_pred CCcccccCcccCccC--CcccccccCCcccccccccccccccccccCCCccCCccccccccccCcHHHHHHHHHHHhhhh
Confidence 789999876 5554 677888788888899999999999999999999999999999999999999999999999998
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCCCCCcCccCCCCCceeeeccCCCCcchhHHHHHHHHHHHHHHHhhhhcccCCcchhH
Q 003929 238 EKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGL 317 (786)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~~ii~~lv~l~~yl~wRi~~~~~~a~~l 317 (786)
++++++.+..+..++++++.+.+++|++++|++++||+||+++++++|+|||++++++|++|++||+||++|++.+++|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~ 316 (1094)
T PLN02436 237 EKLQVVKHEGGNDGGNNDGDELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGL 316 (1094)
T ss_pred hcccccccccccccCCCCCCCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHH
Confidence 55555544322112344422344678899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhcCCCCCCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCC
Q 003929 318 WLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDY 397 (786)
Q Consensus 318 Wl~~~v~Ei~faf~wiL~q~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDY 397 (786)
|+++|+||+||+|+|+|+|++||+||+|.||++||++|+++++++++||+||||||||||++|||++|+||||||||+||
T Consensus 317 Wl~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DY 396 (1094)
T PLN02436 317 WLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDY 396 (1094)
T ss_pred HHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999998878899999999999999999999999999999999999
Q ss_pred CCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCchhhhhhccccccCCCChhHHHHHHHHHHHHHHHH
Q 003929 398 PVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFK 477 (786)
Q Consensus 398 P~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k 477 (786)
|++||+|||||||||+||||||+|||+|||+||||||||+|||||||+||+++.++++++++++|++||++|||||||||
T Consensus 397 P~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K 476 (1094)
T PLN02436 397 PVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFK 476 (1094)
T ss_pred cccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCCcccCcCCccCcEEEEeccCCCCCCCCcchhhhHH
Q 003929 478 VRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNA 557 (786)
Q Consensus 478 ~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~ 557 (786)
+|||+|+++.+++|+++|+|+|||+|||++++|||+|||||++++++.|.+|++||+||||||||||+|+||+||||||+
T Consensus 477 ~RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNa 556 (1094)
T PLN02436 477 VKINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNS 556 (1094)
T ss_pred HHHHHHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhh
Confidence 99999998889999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred HHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCccchhhhhhhhhcccccc
Q 003929 558 LIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDG 637 (786)
Q Consensus 558 lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vFf~ii~~g~Dg 637 (786)
||||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|++++|+|+|++++||+++++|+||
T Consensus 557 LlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDG 636 (1094)
T PLN02436 557 LIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDG 636 (1094)
T ss_pred hhhhheeecCCceEEecccccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceecccchhhhhhhhcCCCCCCCCCCCCCcCCCCCCCcccccCCcccccccCC----CCCCCcchhhhhhhhhhhcc
Q 003929 638 IQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKS----NKKNKDTSKQIYALENIEEG 713 (786)
Q Consensus 638 ~~g~~~~GTgcv~RR~AL~G~~Pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 713 (786)
+|||+|+||||+|||+||||++||...+.+...++||++||||||++++++++..+ +.++.+...+++++++++++
T Consensus 637 lqGP~YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1094)
T PLN02436 637 IQGPIYVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKKKKKNREASKQIHALENIEEG 716 (1094)
T ss_pred CCCccccccCceeeeeeeeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999987666667888999999999998877533222 12334555678899999999
Q ss_pred ccccccccccCCchhHHhhhcCCchHHHhhhhhhcCCCCCCCChhhHHHHHHHcccccCCCCCcCCCcceeeC
Q 003929 714 IEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEVCSRY 786 (786)
Q Consensus 714 ~~~~~~~~~~~~~~~~~~~~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGwiY 786 (786)
.++++++++..++++.++++||+|++||+|+.+++++++.+.+++++|+||++||||+||++|+||+||||||
T Consensus 717 ~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiY 789 (1094)
T PLN02436 717 IEGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIY 789 (1094)
T ss_pred cccccchhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeec
Confidence 9998888888999999999999999999999999888898888999999999999999999999999999999
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=1e-252 Score=2169.07 Aligned_cols=763 Identities=64% Similarity=1.130 Sum_probs=689.3
Q ss_pred CCCCCcccccccCCceEEEeecccccccccccccCCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCc
Q 003929 1 MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (786)
Q Consensus 1 Me~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~ 80 (786)
||+++|||||||||||||+|+.|++.++||++++++||||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 ~~~~~glvaGSh~Rnelv~i~~d~~~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~ 80 (1085)
T PLN02400 1 MEANAGMVAGSYRRNELVRIRHDSDSGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQC 80 (1085)
T ss_pred CCCccccccccccccceeeecccccccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCcc
Confidence 99999999999999999999999777779999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCCCCCCCCCCccccccccccCCCCCchhhhhhhhhhhcccCCCCCccccCccCCCccccccc-cC
Q 003929 81 CPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSV-AQ 159 (786)
Q Consensus 81 CPqCkt~Ykr~kGsprV~Gd~ee~~~dd~e~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~ 159 (786)
|||||||||||||||||+|||||||+||+||||+|...+++. .+++. |++.+.. .++.+ .+
T Consensus 81 CPQCkTrYkR~KgsprV~GDeeedd~DDlenEf~~~~~~~~~-------~~~~~-~~~~~~~----------~~~~~~~~ 142 (1085)
T PLN02400 81 CPQCKTRYRRHKGSPRVEGDEDEDDVDDLENEFNYAQGNGKA-------RHQWQ-GEDIELS----------SSSRHESQ 142 (1085)
T ss_pred CcccCCccccccCCCCCCcccccccchhhhhhhccccccccc-------ccccc-ccCcccc----------CcccccCC
Confidence 999999999999999999999999999999999986432111 01121 4443311 11112 25
Q ss_pred CCcccccCC---CCCCCCCcCcccccCCCC---CCCcccccCCCCCCCCCCCCCCCCCCCCccccCCCccccchhhHHHH
Q 003929 160 EIPLLTYGN---EDVGISSDKHALIIPPFM---GRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWK 233 (786)
Q Consensus 160 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~yg~g~~~w~~~~~~wk 233 (786)
++|+|++++ +|+++++++|++++++.+ |.||||||+||+|+.+|+++|.|||+||+++||||||+||||||+||
T Consensus 143 ~~p~lt~g~~~s~ei~~~~~~~~~~~~~~~~~~~~~~~vh~~p~~d~~~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk 222 (1085)
T PLN02400 143 PIPLLTHGQPVSGEIPCATPDNQSVRTTSGPLGPAERNANSSPYIDPRQPVPVRIVDPSKDLNSYGLGNVDWKERVEGWK 222 (1085)
T ss_pred CCccccCCcccCCCCCCCCCccccccCCcccccccCCcccccCccCcccCCCccccCccccccccccCcHHHHHHHHHHH
Confidence 789999976 899887766655666543 45799999999999999999999999999999999999999999999
Q ss_pred HhhhhhhhhhccCCC-CCCCCCCCCCCCCCCCcCccCCCCCceeeeccCCCCcchhHHHHHHHHHHHHHHHhhhhcccCC
Q 003929 234 KKQNEKLQVVKHQGG-NGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVN 312 (786)
Q Consensus 234 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~~ii~~lv~l~~yl~wRi~~~~~ 312 (786)
+||+|++.++.+... ..||++++.+.+++|+++||++++||+||++|++++|++||++++++|++|++||+||++|++.
T Consensus 223 ~~~~k~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~ 302 (1085)
T PLN02400 223 LKQDKNMMQMTNKYHEGKGGDMEGTGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVK 302 (1085)
T ss_pred hhhhhhccccccccccccccCCCCCCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 999776554444321 1112333333447789999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhcCCCCCCCCceeEEeccCCCCCCCHHHHHHHHHHH
Q 003929 313 DAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSI 392 (786)
Q Consensus 313 ~a~~lWl~~~v~Ei~faf~wiL~q~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~ 392 (786)
+++|+|+++|+||+||+|+|+|+|++||+||+|.||++||++|+++++++++||+||||||||||++|||++|+||||||
T Consensus 303 ~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSi 382 (1085)
T PLN02400 303 DAYGLWLTSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSI 382 (1085)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988778899999999999999999999999999999
Q ss_pred HcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCchhhhhhccccccCCCChhHHHHHHHHHHH
Q 003929 393 LAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKRE 472 (786)
Q Consensus 393 lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~k~d~~k~~~~~~f~~e~r~~Kre 472 (786)
||+|||++||+|||||||||+||||||+|||+|||+||||||||+|||||||+||+++.++++++++|+|++||++||||
T Consensus 383 LA~DYP~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~e 462 (1085)
T PLN02400 383 LAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKRE 462 (1085)
T ss_pred HhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCCcccCcCCccCcEEEEeccCCCCCCCCcch
Q 003929 473 YEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKA 552 (786)
Q Consensus 473 Yee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g~~d~~g~~lP~lvYvSREKrpg~~Hh~KA 552 (786)
|||||+|||+|+++++++|+++|+|+|||+|||+++||||+|||||++++++.|.+|++||+||||||||||+|+||+||
T Consensus 463 YEe~k~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KA 542 (1085)
T PLN02400 463 YEEFKVRINALVAKAQKIPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKA 542 (1085)
T ss_pred HHHHHHHHHHHHhhhccCCccccccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhh
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred hhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCccchhhhhhhhhc
Q 003929 553 GAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINM 632 (786)
Q Consensus 553 GALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vFf~ii~ 632 (786)
||||+||||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||||+|+|++++|+|+|++++||++++
T Consensus 543 GAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~ 622 (1085)
T PLN02400 543 GAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINL 622 (1085)
T ss_pred hhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceecccchhhhhhhhcCCCCCCCCCCCCCcCCCCCCCcccccCCcccccccC-------CCCCCCcchhhhh
Q 003929 633 KGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGK-------SNKKNKDTSKQIY 705 (786)
Q Consensus 633 ~g~Dg~~g~~~~GTgcv~RR~AL~G~~Pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 705 (786)
+|+||+|||+|+||||+|||+||||++||..++.....+. ||+||++++++++++ +..++.+++.+++
T Consensus 623 ~GldGlqGP~YvGTGC~frR~aLYG~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1085)
T PLN02400 623 KGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNII-----VKSCCGSRKKGKGSKKYNIDKKRAMKRTESNVPIF 697 (1085)
T ss_pred cccccCCCccccccCcceeeeeeccCCCcccccccccccc-----ccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999876432111111 245666665533221 1113355677899
Q ss_pred hhhhhhccccccccccccCCchhHHhhhcCCchHHHhhhhhhcCCCCCCCChhhHHHHHHHcccccCCCCCcCCCcceee
Q 003929 706 ALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEVCSR 785 (786)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGwi 785 (786)
++++++++.++++++++..+++++++++||+|++||+|+++++++++++.+++++|+||++||||+||++|+||+|||||
T Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwi 777 (1085)
T PLN02400 698 NMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWI 777 (1085)
T ss_pred cccccccccccccchhhhhhhhhhhhhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCee
Confidence 99999999999988888889999999999999999999999888888888999999999999999999999999999999
Q ss_pred C
Q 003929 786 Y 786 (786)
Q Consensus 786 Y 786 (786)
|
T Consensus 778 Y 778 (1085)
T PLN02400 778 Y 778 (1085)
T ss_pred c
Confidence 9
No 3
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=1.1e-239 Score=2059.26 Aligned_cols=748 Identities=66% Similarity=1.142 Sum_probs=665.3
Q ss_pred ccccccccccccCCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccccCCCCCCCCCC
Q 003929 23 DEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEE 102 (786)
Q Consensus 23 ~~~~~~~~~~~~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~kGsprV~Gd~e 102 (786)
|++.++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||||
T Consensus 4 ~~~~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gDee 83 (1079)
T PLN02638 4 EGETGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGDEE 83 (1079)
T ss_pred CCCCCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCcccc
Confidence 56666789999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCC-ccccccccccCCC--CCchhhhhhhhhhhcccCCCCCccccCccCCCccccccccCCCcccccCC---CCCCCCCc
Q 003929 103 EDD-TDDLENEFDINDR--KDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGN---EDVGISSD 176 (786)
Q Consensus 103 e~~-~dd~e~ef~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~---~~~~~~~~ 176 (786)
||+ +||+||||+|... +..++++|+|+||+|++|++.|...+ +.+...+.+++|+|+++| +|++++++
T Consensus 84 ed~~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 157 (1079)
T PLN02638 84 EDGDADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAP------NYDKEVSHNHIPLLTNGQSVSGELSAASP 157 (1079)
T ss_pred ccCcchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccc------cccccCCCCCCcccccCccccCccCCCCC
Confidence 887 8999999998632 23367899999999999998662210 011111125789999876 78886665
Q ss_pred CcccccCCCCCCCcccccCCCCCCC-CCCCCCCCCCCCCccccCCCccccchhhHHHHHhhhhhhhhhccCC----CCCC
Q 003929 177 KHALIIPPFMGRGKRIHPMSFPDGF-MTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVKHQG----GNGG 251 (786)
Q Consensus 177 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~yg~g~~~w~~~~~~wk~~~~~~~~~~~~~~----~~~~ 251 (786)
+|++++++.+ .|||| ||+|+. +|+++|+|||+||+++|||||++||+|||+||.||+|++.++.+.. +.+|
T Consensus 158 ~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~ 233 (1079)
T PLN02638 158 ERLSMASPGA-GGKRI---PYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGG 233 (1079)
T ss_pred ccccccCccc-cCCcc---cccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCc
Confidence 5544555543 57998 898865 7899999999999999999999999999999999976655443321 1222
Q ss_pred CCCCC-CCCCCCCCcCccCCCCCceeeeccCCCCcchhHHHHHHHHHHHHHHHhhhhcccCCcchhHHHHHHHHHHHHHH
Q 003929 252 GNNDG-DGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAV 330 (786)
Q Consensus 252 ~~~~~-~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~~ii~~lv~l~~yl~wRi~~~~~~a~~lWl~~~v~Ei~faf 330 (786)
+++++ ++.+++|+++|+++++||+||+++++++|++||++++++|++|++||+||++|++.+++|+|+++|+||+||+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf 313 (1079)
T PLN02638 234 GDIDASTDVLMDDALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFAL 313 (1079)
T ss_pred CCCCCccccccccccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHH
Confidence 23322 23346899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccccchhhhhhhhhhhcCCCCCCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCC
Q 003929 331 SWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDG 410 (786)
Q Consensus 331 ~wiL~q~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG 410 (786)
+|+|+|++||+||+|.||++||++|+++++++++||+||||||||||++|||++|+||||||||+|||++||+|||||||
T Consensus 314 ~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDG 393 (1079)
T PLN02638 314 SWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDG 393 (1079)
T ss_pred HHHHhccccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCC
Confidence 99999999999999999999999999988778899999999999999999999999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCchhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 003929 411 AAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKV 490 (786)
Q Consensus 411 ~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~v 490 (786)
||+||||||+|||+|||+||||||||+|||||||+||+++.++++++++|+|++||++|||||||||+|||+|+++++++
T Consensus 394 gS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~ 473 (1079)
T PLN02638 394 AAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKV 473 (1079)
T ss_pred chHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCCCCCccCCCcceeeeccCCCcccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCE
Q 003929 491 PEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPY 570 (786)
Q Consensus 491 p~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~Tngpf 570 (786)
|+++|+|+||++|||++++|||+||||+++++++.|.+|++||+|||||||||||++||+||||||+||||||+||||||
T Consensus 474 p~~~~~m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPf 553 (1079)
T PLN02638 474 PEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPF 553 (1079)
T ss_pred CCccccccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCe
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCccchhhhhhhhhccccccCCCceecccchhh
Q 003929 571 LLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVF 650 (786)
Q Consensus 571 ILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~ 650 (786)
|||||||||+|||++||+||||||||+.|+++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|
T Consensus 554 ILNLDCDmYiNns~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~f 633 (1079)
T PLN02638 554 LLNLDCDHYINNSKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVF 633 (1079)
T ss_pred EeecccCcccCchHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCCCCCCCCCcCCCCCCCcccccCC-cccccccCC-----C--CCCCcchhhhhhhhhhhccccc--cccc
Q 003929 651 RRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRS-RKKSKKGKS-----N--KKNKDTSKQIYALENIEEGIEG--IDNE 720 (786)
Q Consensus 651 RR~AL~G~~Pp~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~--~~~~ 720 (786)
||+||||++||...+... +..+++||++ +++.++.+. + .++...+.+++++++++++.++ ++++
T Consensus 634 RR~ALYG~~p~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1079)
T PLN02638 634 NRTALYGYEPPIKPKHKK------PGFLSSLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDE 707 (1079)
T ss_pred eehhhcCcCCcccccccc------cccccccccccccccccccchhhccccccccccccccccccccccccccccccchh
Confidence 999999999997543211 1112235555 333222211 1 1233455677888887777665 4556
Q ss_pred cccCCchhHHhhhcCCchHHHhhhhhhcCCCCCCCChhhHHHHHHHcccccCCCCCcCCCcceeeC
Q 003929 721 KSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEVCSRY 786 (786)
Q Consensus 721 ~~~~~~~~~~~~~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGwiY 786 (786)
++.++++..++++||+|++||+|+++++++.+++.+++++|+||++||||+||++|+||+||||+|
T Consensus 708 ~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~Y 773 (1079)
T PLN02638 708 KSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIY 773 (1079)
T ss_pred hhhhhhhhhhhhhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeee
Confidence 777889999999999999999999999999998889999999999999999999999999999999
No 4
>PLN02189 cellulose synthase
Probab=100.00 E-value=1.2e-231 Score=1987.05 Aligned_cols=726 Identities=67% Similarity=1.176 Sum_probs=649.5
Q ss_pred CCCCCcccccccCCceEEEeecccccccccccccCCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCc
Q 003929 1 MATNGRLVAGSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQA 80 (786)
Q Consensus 1 Me~~~~~~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~ 80 (786)
||+++|||||||||||||+++.| ++ .||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+
T Consensus 1 ~~~~~g~~~gs~~r~~~~~~~~~-~~-~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~ 78 (1040)
T PLN02189 1 MEASAGLVAGSHNRNELVVIHGH-EE-PKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQN 78 (1040)
T ss_pred CCcccccccccccccceeeeccc-cC-CCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCcc
Confidence 99999999999999999999977 43 58899999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccCCCCCCCCCCCCCccccccccccCCC-CCchhhhhhhhhhhcccCCCCCccccCccCCCccccccccC
Q 003929 81 CPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDINDR-KDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQ 159 (786)
Q Consensus 81 CPqCkt~Ykr~kGsprV~Gd~ee~~~dd~e~ef~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 159 (786)
|||||||||||||||||+||||||++||+||||+|... ++.++++|+|+||+|++|++.+... +.+
T Consensus 79 CpqCkt~Y~r~kgs~~v~gd~ee~~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~ 145 (1040)
T PLN02189 79 CPQCKTRYKRLKGSPRVEGDDDEEDIDDIEHEFNIDDEQDKNKHITEAMLHGKMSYGRGPDDDE-------------NNQ 145 (1040)
T ss_pred CcccCCchhhccCCCCcCCccccccchhhhhhccccccccchhHHHHHHhhhhcccCCCcccCC-------------CcC
Confidence 99999999999999999999999999999999998643 3347789999999999998865221 124
Q ss_pred CCcccccCC-----CCCCCCC--cCcccccCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccccCCCccccchhhHHH
Q 003929 160 EIPLLTYGN-----EDVGISS--DKHALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEW 232 (786)
Q Consensus 160 ~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~yg~g~~~w~~~~~~w 232 (786)
++|++++++ ++++..+ .+|++++++. .||+|||+||++. ++|+|||+||++ ||||||+|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~--------wk~rv~~w 211 (1040)
T PLN02189 146 FPPVITGVRSRPVSGEFPIGSGYGHGEQMLSSS--LHKRVHPYPVSEP----GSAKWDEKKEGG--------WKERMDDW 211 (1040)
T ss_pred CCcccccCccccccCCcCccccccccccccCCc--ccCccCcccccCC----CcccCCcccccc--------HHHHHHHH
Confidence 678888865 5554211 1343444554 5899999999884 468999999975 99999999
Q ss_pred HHhhhhhhhhhccCCCCCCCCCCCCCCCCCCCcCccCCCCCceeeeccCCCCcchhHHHHHHHHHHHHHHHhhhhcccCC
Q 003929 233 KKKQNEKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVN 312 (786)
Q Consensus 233 k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~~ii~~lv~l~~yl~wRi~~~~~ 312 (786)
|+||+ ..++ ++ +.+++|+++++++++||+||+++++++|+|||++++++|++|++||+||++|++.
T Consensus 212 k~~~~-------~~~~------~~-~~~~~d~~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~ 277 (1040)
T PLN02189 212 KMQQG-------NLGP------DP-DDYDADMALIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVH 277 (1040)
T ss_pred Hhhcc-------cCCC------CC-CCCchhhhhcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCc
Confidence 99994 1110 11 2335677888999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhcCCCCCCCCceeEEeccCCCCCCCHHHHHHHHHHH
Q 003929 313 DAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSI 392 (786)
Q Consensus 313 ~a~~lWl~~~v~Ei~faf~wiL~q~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~ 392 (786)
+++|+|+++++||+||+|+|+|+|++||+||+|.||++||++|+++++++++||+||||||||||++|||++|+||||||
T Consensus 278 ~~~~~W~~s~~~E~wFaf~Wll~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSi 357 (1040)
T PLN02189 278 DAIGLWLTSIICEIWFAVSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSI 357 (1040)
T ss_pred cchHHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987778899999999999999999999999999999
Q ss_pred HcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCchhhhhhccccccCCCChhHHHHHHHHHHH
Q 003929 393 LAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKRE 472 (786)
Q Consensus 393 lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~k~d~~k~~~~~~f~~e~r~~Kre 472 (786)
||+|||++||+|||||||||+||||||+|||+|||+||||||||+|||||||+||+++.++++++++++|++||++||||
T Consensus 358 LA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~e 437 (1040)
T PLN02189 358 LAMDYPVDKISCYVSDDGASMLTFEALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKRE 437 (1040)
T ss_pred HhhcccccceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCCcccCcCCccCcEEEEeccCCCCCCCCcch
Q 003929 473 YEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKA 552 (786)
Q Consensus 473 Yee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g~~d~~g~~lP~lvYvSREKrpg~~Hh~KA 552 (786)
|||||+||++|+++.+++|+++|.|+||++|||++++|||+||||+++++++.|.+|++||+|||||||||||++||+||
T Consensus 438 YEe~kvRI~~l~a~~~~~p~~~~~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KA 517 (1040)
T PLN02189 438 YEEFKVRINAIVAKAQKVPPEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKA 517 (1040)
T ss_pred HHHHHHHHHHHHhhcCccCCccceeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccch
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred hhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCccchhhhhhhhhc
Q 003929 553 GAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINM 632 (786)
Q Consensus 553 GALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vFf~ii~ 632 (786)
||||+||||||+|||||||||||||||+|||++||+||||||||+.|+++|||||||+|+|++++|+|+|++++||+++|
T Consensus 518 GAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~ 597 (1040)
T PLN02189 518 GAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINM 597 (1040)
T ss_pred hhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCceecccchhhhhhhhcCCCCCCCCCCCCCcCCCCCCCcccccCCcccccccCCCCCCCcchhhhhhhhhhhc
Q 003929 633 KGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEE 712 (786)
Q Consensus 633 ~g~Dg~~g~~~~GTgcv~RR~AL~G~~Pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (786)
+|+||+|||+||||||+|||+||||++||...+.+..++. +|+||.+++++++.+ . +.... .+
T Consensus 598 ~GlDGlqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~----~~~~~-------~~ 660 (1040)
T PLN02189 598 KGLDGIQGPVYVGTGCVFRRQALYGYDPPKGPKRPKMVTC-----DCCPCFGRRKKKHAK-N----GLNGE-------VA 660 (1040)
T ss_pred cccccCCCccccccCceeeeeeeeccCccccccccccccc-----chhhhcccccccccc-c----ccccc-------cc
Confidence 9999999999999999999999999999876554444331 223444433321111 0 00000 01
Q ss_pred cccccccccccCCchhHHhhhcCCchHHHhhhhhhcCCCCCCCChhhHHHHHHHcccccCCCCCcCCCcceeeC
Q 003929 713 GIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEVCSRY 786 (786)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~~~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGwiY 786 (786)
+.+++++++...+++++++++||+|++||+|+..+.++.+..++++++++||++|+||+||++|+||+||||+|
T Consensus 661 ~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~Y 734 (1040)
T PLN02189 661 ALGGMESDKEMLMSQMNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIY 734 (1040)
T ss_pred cccccchhhhhhhhhhhhHhhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCeec
Confidence 22233445555678899999999999999999988888888888899999999999999999999999999999
No 5
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=1.7e-230 Score=1978.02 Aligned_cols=697 Identities=65% Similarity=1.211 Sum_probs=635.3
Q ss_pred ccccCCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccccCCCCCCCC-CCCCCcccc
Q 003929 31 VKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGD-EEEDDTDDL 109 (786)
Q Consensus 31 ~~~~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~kGsprV~Gd-~ee~~~dd~ 109 (786)
-+..++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |||+++||+
T Consensus 10 ~~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd~ 89 (1044)
T PLN02915 10 RQSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDDF 89 (1044)
T ss_pred ccCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchhh
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999 667889999
Q ss_pred ccccccCCCCCchhhhhhhhhhhcccCCCCCccccCccCCCccccccccCCCcccccCCCCCCCCCcCcccccCCCCCCC
Q 003929 110 ENEFDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGNEDVGISSDKHALIIPPFMGRG 189 (786)
Q Consensus 110 e~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 189 (786)
||||+|....+ .+.|++++|++|++.+... ..+.+++|++++ +++++
T Consensus 90 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~-~~~~~----------------- 136 (1044)
T PLN02915 90 EDEFQIKSPQD----HEPVHQNVFAGSENGDYNA-----------QQWRPGGPAFSS-TGSVA----------------- 136 (1044)
T ss_pred hhhhccccccc----cchhhhhhccCCCCccccc-----------cccCCCCccccC-CCCcC-----------------
Confidence 99999864322 1248999999988765211 111245566665 32322
Q ss_pred cccccCCCCCCCCCCCCCCCCCCCCccccCCCccccchhhHHHHHhhhhhhhhhccCCCCCCCCCCCCCCCCCCCcCccC
Q 003929 190 KRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDE 269 (786)
Q Consensus 190 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~yg~g~~~w~~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (786)
-+.|+|+|| ||||++||||||+||+||+ |++.+.+..++ ..+ ..+++|+++|++
T Consensus 137 ----------------~~~~~~~~~----~~g~~~wk~r~~~wk~~~~-~~~~~~~~~~~----~~~-~~~~~~~~~~~~ 190 (1044)
T PLN02915 137 ----------------GKDLEAERE----GYGNAEWKDRVDKWKTRQE-KRGLVNKDDSD----DGD-DKGDEEEYLLAE 190 (1044)
T ss_pred ----------------CCCcCcccc----CcCCHHHHHHHHHHHhhhh-hhccccccccC----CCC-CCCCcccccccc
Confidence 135899997 8999999999999999996 55554443221 111 223678899999
Q ss_pred CCCCceeeeccCCCCcchhHHHHHHHHHHHHHHHhhhhcccCCcchhHHHHHHHHHHHHHHHHHHhhcccccccccchhh
Q 003929 270 GRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYL 349 (786)
Q Consensus 270 ~~~pL~rk~~i~~~~~~~yR~~ii~~lv~l~~yl~wRi~~~~~~a~~lWl~~~v~Ei~faf~wiL~q~~kw~Pv~R~t~~ 349 (786)
+++||+||+++++++|+|||++++++|++|++||+||++|++.+++|+|+++|+||+||+|+|+|+|++||+||+|.||+
T Consensus 191 ~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~ 270 (1044)
T PLN02915 191 ARQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYL 270 (1044)
T ss_pred cCCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhh
Q 003929 350 DRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKW 429 (786)
Q Consensus 350 drL~~r~e~~~~~~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~W 429 (786)
+||++||++++++++||+||||||||||++|||++|+||||||||+|||++||+|||||||||+||||||+|||+|||+|
T Consensus 271 drL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~W 350 (1044)
T PLN02915 271 DRLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRW 350 (1044)
T ss_pred HHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhh
Confidence 99999999887788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhcCCCCCchhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCcc
Q 003929 430 VPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVR 509 (786)
Q Consensus 430 vPFCkK~~IepRaPe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~r 509 (786)
|||||||+|||||||+||+++.++++++++++|++||++|||||||||+|||+|+++++++|+++|+|+|||+|||+++|
T Consensus 351 vPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~ 430 (1044)
T PLN02915 351 VPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTR 430 (1044)
T ss_pred cchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeeccCCCcccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHh
Q 003929 510 DHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREA 589 (786)
Q Consensus 510 dHp~iIqVll~~~g~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~a 589 (786)
|||+|||||++++++.|.+|++||+||||||||||+|+||+||||||+||||||+|||||||||||||||+|||+++|+|
T Consensus 431 dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~A 510 (1044)
T PLN02915 431 DHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREA 510 (1044)
T ss_pred CCccceEEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhh
Confidence 99999999999999889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCcceEEEecCccccCCCCCCCccchhhhhhhhhccccccCCCceecccchhhhhhhhcCCCCCCCCCCCCC
Q 003929 590 MCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRK 669 (786)
Q Consensus 590 mcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL~G~~Pp~~~~~~~~ 669 (786)
|||||||+.|+++|||||||+|+|++++|+|+|++++||+++++|+||+|||+|+||||+|||+||||++||..++.++.
T Consensus 511 MCf~lD~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG~~pp~~~~~~~~ 590 (1044)
T PLN02915 511 MCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKM 590 (1044)
T ss_pred ceeeecCCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecCcCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988878888
Q ss_pred cCCCCCCCcccccCCcccccccCCC-----------------------------CCCCcchhhhhhhhhhhcccccccc-
Q 003929 670 TCNCLPKWCCCCCRSRKKSKKGKSN-----------------------------KKNKDTSKQIYALENIEEGIEGIDN- 719 (786)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~- 719 (786)
+|+||+.||||||++++|+++...+ ....+++.+++++++|+++.|++++
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (1044)
T PLN02915 591 TCDCWPSWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEGYDEL 670 (1044)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence 9999999998888877664332100 0012345578899999999998877
Q ss_pred ccccCCchhHHhhhcCCchHHHhhhhhhcCCCCCCCChhhHHHHHHHcccccCCCCCcCCCcceeeC
Q 003929 720 EKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEVCSRY 786 (786)
Q Consensus 720 ~~~~~~~~~~~~~~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGwiY 786 (786)
++++.++++.++++||+|++||+|+.+++++.+.+++++++|+||++||||+||++|+||+||||+|
T Consensus 671 ~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~Y 737 (1044)
T PLN02915 671 EKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWIY 737 (1044)
T ss_pred hhhhhhhhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCccc
Confidence 7777889999999999999999999999999998889999999999999999999999999999999
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=2.2e-212 Score=1818.73 Aligned_cols=663 Identities=62% Similarity=1.142 Sum_probs=582.9
Q ss_pred ccCCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccccCCCCCCCCCCCCCccccccc
Q 003929 33 ELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEEEDDTDDLENE 112 (786)
Q Consensus 33 ~~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~kGsprV~Gd~ee~~~dd~e~e 112 (786)
++++|+||||||+||+++|||+|||||||+|||||||||||||||||+||||||||| ||++.||+|||
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk------------~~~~~~d~~~~ 70 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD------------AENVFDDVETK 70 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc------------cccccchhhhh
Confidence 567899999999999999999999999999999999999999999999999999998 57788999999
Q ss_pred cccCCCCCchhhhhhhhhhhcccCCCCCccccCccCCCccccccccCCCcccccCCCCCCCCCcCcccccCCCCCCCccc
Q 003929 113 FDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVAQEIPLLTYGNEDVGISSDKHALIIPPFMGRGKRI 192 (786)
Q Consensus 113 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 192 (786)
|+-+ .++++ ++|++|++.+ . +.+++|++++.+++
T Consensus 71 ~~~~----~~~~~-----~~~~~~~~~~---~------------~~~~~~~~~~~~~~---------------------- 104 (977)
T PLN02195 71 HSRN----QSTMA-----SHLNDTQDVG---I------------HARHISSVSTVDSE---------------------- 104 (977)
T ss_pred hccc----hhhhh-----hhcccCcCCC---C------------CCccccccccCCCc----------------------
Confidence 9421 12222 5677665422 0 11233444331111
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCccccCCCccccchhhHHHHHhhhhhhhhhccCCCCCCCCCCCCCCCCCCCcCccCCCC
Q 003929 193 HPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNEKLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQ 272 (786)
Q Consensus 193 ~~~~~~~~~~~~~~r~~~~~~~~~~yg~g~~~w~~~~~~wk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (786)
.| | +|||++||||||+||.||+|++..+.+.+.. .+++++ +.+++|+++ |+.++
T Consensus 105 ---------~~----------~----~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~-~~~~~ 158 (977)
T PLN02195 105 ---------LN----------D----EYGNPIWKNRVESWKDKKNKKKKSAKKKEAH-KAQIPP-EQQMEEKPS-ADAYE 158 (977)
T ss_pred ---------cc----------C----ccCCHHHHHHHHHHHHhhhhhcccccccccc-ccCCCC-ccCCccccc-ccccC
Confidence 00 1 3999999999999999997666544443311 112222 344678886 99999
Q ss_pred CceeeeccCCCCcchhHHHHHHHHHHHHHHHhhhhcccCCcchhHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhh
Q 003929 273 PLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRL 352 (786)
Q Consensus 273 pL~rk~~i~~~~~~~yR~~ii~~lv~l~~yl~wRi~~~~~~a~~lWl~~~v~Ei~faf~wiL~q~~kw~Pv~R~t~~drL 352 (786)
||+||+++++++|+|||++++++|++|++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|.||++||
T Consensus 159 pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL 238 (977)
T PLN02195 159 PLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYIDRL 238 (977)
T ss_pred CceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhH
Q 003929 353 SLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPF 432 (786)
Q Consensus 353 ~~r~e~~~~~~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPF 432 (786)
++|+++++++++||+||||||||||++|||++|+||||||||+|||++||+|||||||||+||||||+|||+|||+||||
T Consensus 239 ~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPF 318 (977)
T PLN02195 239 SARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWVPF 318 (977)
T ss_pred HHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhccc
Confidence 99999887789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCchhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCC
Q 003929 433 CKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHP 512 (786)
Q Consensus 433 CkK~~IepRaPe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp 512 (786)
||||+|||||||+||+++.++++++++|+|++||++|||||||||+|||+|+++++++|+++|+|+|||+|||+++||||
T Consensus 319 CkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~dHp 398 (977)
T PLN02195 319 CKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRDHP 398 (977)
T ss_pred ccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred cceeeeccCCCcccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcc
Q 003929 513 GMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCF 592 (786)
Q Consensus 513 ~iIqVll~~~g~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcf 592 (786)
+|||||++++++.|.+|++||+|||||||||||++||+||||||++|||||+|||||||||||||||+|||++||+||||
T Consensus 399 ~IIqVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf 478 (977)
T PLN02195 399 GMIQVFLGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCF 478 (977)
T ss_pred chhhhhccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhh
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcceEEEecCccccCCCCCCCccchhhhhhhhhccccccCCCceecccchhhhhhhhcCCCCCCCCCCCCCcCC
Q 003929 593 MMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCN 672 (786)
Q Consensus 593 flDp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL~G~~Pp~~~~~~~~~~~ 672 (786)
|+||+.|+++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||++||..++.++.++.
T Consensus 479 ~~D~~~g~~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~ 558 (977)
T PLN02195 479 LMDPVVGRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKSSSS 558 (977)
T ss_pred ccCcccCCeeEEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987665555555
Q ss_pred CCCCCcccccCCcccccccC----CCCCCCcchhhhhhhhhhhccccccccccccCCchhHHhhhcCCchHHHhhhhhhc
Q 003929 673 CLPKWCCCCCRSRKKSKKGK----SNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEA 748 (786)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG~S~~fi~S~~~e~ 748 (786)
|| || ||+++++..... +..++...+.++.+++++++. .+.+++..+++++++++||+|++||+|++++.
T Consensus 559 ~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~ 631 (977)
T PLN02195 559 SS---SC-CCPTKKKPEQDPSEIYRDAKREDLNAAIFNLREIDNY---DEYERSMLISQMSFEKTFGLSSVFIESTLMEN 631 (977)
T ss_pred cc---cc-cccccccccccchhhcccccccccccccccccccccc---chhhhhhhhhhhHHHHhhcccHHHHHHHHHHh
Confidence 44 43 445444422111 111233334455556554421 23356667889999999999999999999999
Q ss_pred CCCCCCCChhhHHHHHHHcccccCCCCCcCCCcceeeC
Q 003929 749 GGVPTGASTASLLNEAIHVISCGYEDKTDWGKEVCSRY 786 (786)
Q Consensus 749 ~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGwiY 786 (786)
++.+..++++++++||++||||+||++|+||+||||+|
T Consensus 632 ~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~Y 669 (977)
T PLN02195 632 GGVPESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIY 669 (977)
T ss_pred cCCCCCCCcHHHHHHHHhhhcccCccccchhhhcCeec
Confidence 88888888999999999999999999999999999999
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=3.4e-187 Score=1618.57 Aligned_cols=662 Identities=48% Similarity=0.860 Sum_probs=551.6
Q ss_pred CCcccccccC---CceEEEeecccccccccccccCCccccc--cCccccccCCCCceeecCCCCCCcchhhhHHHHhhCC
Q 003929 4 NGRLVAGSHN---RNEFVLINADEVARVTSVKELSGQICQI--CGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN 78 (786)
Q Consensus 4 ~~~~~~g~~~---r~~~~~~~~~~~~~~~~~~~~~~~~Cqi--Cgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~ 78 (786)
+++||||+|| |+|+|++..|.+..|+++++..+..|.+ |+.+++.+++|+...+| ||+|.|||+||-++.+.|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 166 (1135)
T PLN02248 89 SNSIFTGGFNSVTRAHLMDKVIESEVSHPQMAGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG- 166 (1135)
T ss_pred ccceecCCCCccchhhhhhcccccccCCcccCCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-
Confidence 6789999999 9999999999999999999999999999 99999999999999999 999999999999999996
Q ss_pred CcCCCCccccccccCCCCCCCCCCCCCccccccccccCCCCCchhhhhhhhhhhcccCCCCCccccCccCCCcccccccc
Q 003929 79 QACPQCKTRYKRIKGSPRVDGDEEEDDTDDLENEFDINDRKDPHHIAEAMLSSRLNIGRGSQAYVSGITTPSEVDSVSVA 158 (786)
Q Consensus 79 q~CPqCkt~Ykr~kGsprV~Gd~ee~~~dd~e~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 158 (786)
+.||+||++||.+ |++++. +| ++ .+. . .++.. ..++...+.. .+ .
T Consensus 167 ~~~~~~~~~~~~~--------~~~~~~-~~----~~--~~~--~----~~~~~--~~~~~~~~~~-------~~-----~ 211 (1135)
T PLN02248 167 GICPGCKEPYKVT--------DLDDEV-PD----ES--SGA--L----PLPPP--GGSKMDRRLS-------LM-----K 211 (1135)
T ss_pred CCCCCCccccccc--------cccccc-cc----cc--ccc--c----cCCCC--CCcccccccc-------cc-----c
Confidence 7999999999765 332222 11 11 111 0 11100 0000000000 00 0
Q ss_pred CCCcccccCCCCCCCCCcCcccccCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCccccCCCccccchhhHHHHHhhhh
Q 003929 159 QEIPLLTYGNEDVGISSDKHALIIPPFMGRGKRIHPMSFPDGFMTLPPRPMDPKKDLAVYGYGTVAWKERMEEWKKKQNE 238 (786)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~yg~g~~~w~~~~~~wk~~~~~ 238 (786)
++-.+..++.|||+ |+ ||++++| ++|||||+.|++...
T Consensus 212 ~~~~~~~~~~~~~~-----~~---------------------------~w~~~~~--~~~~~~~~~~~~~~~-------- 249 (1135)
T PLN02248 212 SNSLLMRSQTGDFD-----HN---------------------------RWLFETK--GTYGYGNAVWPKDDG-------- 249 (1135)
T ss_pred ccchhccCCCCCCC-----Cc---------------------------eeeeecc--cccccccccCccccc--------
Confidence 10111234458887 65 9999999 999999999998421
Q ss_pred hhhhhccCCCCCCCCCCCCCCCCCCCcCccCCCCCceeeeccCCCCcchhHHHHHHHHHHHHHHHhhhhcccCCcchhHH
Q 003929 239 KLQVVKHQGGNGGGNNDGDGVDDPDLPMMDEGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLW 318 (786)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pL~rk~~i~~~~~~~yR~~ii~~lv~l~~yl~wRi~~~~~~a~~lW 318 (786)
.|+++ + +... ..+||++|+||+||+++++++|+|||++++++|++|++||+||++|++.+++|+|
T Consensus 250 -------~~~~~----~--~~~~--~~~~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W 314 (1135)
T PLN02248 250 -------YGDDG----G--GGGP--GEFMDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLW 314 (1135)
T ss_pred -------cCCCC----C--cccc--ccccccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHH
Confidence 12211 0 1111 1468999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhcCC-----CCCCCCceeEEeccCCCCCCCHHHHHHHHHHHH
Q 003929 319 LTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEG-----KPSDLADIDIFVSTVDPMKEPPLITANTVLSIL 393 (786)
Q Consensus 319 l~~~v~Ei~faf~wiL~q~~kw~Pv~R~t~~drL~~r~e~~~-----~~~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~l 393 (786)
+++|+||+||+|+|+|+|++||+||+|.||+++|++|++.|+ ++++||+||||||||||++|||++|+|||||||
T Consensus 315 ~~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiL 394 (1135)
T PLN02248 315 GMSVVCEIWFAFSWLLDQLPKLCPINRATDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSIL 394 (1135)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccccCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHh
Confidence 999999999999999999999999999999999999998543 357899999999999999999999999999999
Q ss_pred cCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCchhhhhhccccccCCCChhHHHHHHHHHHHH
Q 003929 394 AVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREY 473 (786)
Q Consensus 394 AlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~k~d~~k~~~~~~f~~e~r~~KreY 473 (786)
|+|||++||+|||||||||+||||||+|||+|||+||||||||+|||||||+||+++.++++++++|+|++||++|||||
T Consensus 395 A~DYP~eKLacYvSDDGgS~LTf~AL~EAa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreY 474 (1135)
T PLN02248 395 AADYPVEKLACYLSDDGGALLTFEAMAEAASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREY 474 (1135)
T ss_pred cccccccceeEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh------------------------------hcCCCCCCCcccCCCCCCCCC--------ccCCCcce
Q 003929 474 EEFKVRINGLVAM------------------------------AQKVPEDGWTMQDGTPWPGNN--------VRDHPGMI 515 (786)
Q Consensus 474 ee~k~RI~~L~~~------------------------------~~~vp~~~w~m~dgt~W~g~~--------~rdHp~iI 515 (786)
||||+|||+|++. .+++|+++| |+|||+|||+| ++|||+||
T Consensus 475 ee~K~RIe~l~~~~~~rs~~~n~~~e~~~~~~~~~~~~~~~~e~~~~~~~~w-m~dgt~wpg~W~~~~~~~~~~dH~~II 553 (1135)
T PLN02248 475 DEFKVRINGLPDSIRRRSDAYNAREEIKAKKKQRESGGGDPSEPLKVPKATW-MADGTHWPGTWLSSAPDHSRGDHAGII 553 (1135)
T ss_pred HHHHHHHHhhhhhccccccccchhHHHHhhhhhhhhccccccccccccccee-eccCCcCCCcccCcccCCCCCCCccee
Confidence 9999999999641 245788899 99999999995 46999999
Q ss_pred eeeccCCC------------cccCc--CCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCC
Q 003929 516 QVFLGQNG------------VRDIE--GNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYIN 581 (786)
Q Consensus 516 qVll~~~g------------~~d~~--g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yin 581 (786)
|||+++++ ..|.+ +.+||+||||||||||+++||+||||||+|+||||+|||||||||||||||+|
T Consensus 554 qVll~~p~~e~~~g~~~~~~~~d~~~~d~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiN 633 (1135)
T PLN02248 554 QVMLKPPSDEPLMGSADDENLIDFTDVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIY 633 (1135)
T ss_pred EEeccCCCcccccCcccccccccccccccccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccC
Confidence 99998754 11322 44899999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCccchhhhhhhhhccccccCCCceecccchhhhhhhhcCCCCC
Q 003929 582 NSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAP 661 (786)
Q Consensus 582 np~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL~G~~Pp 661 (786)
||++||+||||||||+ |+++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||++||
T Consensus 634 ns~alr~AMCf~lD~~-g~~vAfVQFPQrF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp 712 (1135)
T PLN02248 634 NSLAIREGMCFMMDRG-GDRICYVQFPQRFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPP 712 (1135)
T ss_pred CchhHHhcchheecCC-CCceEEEcCCcccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCc
Confidence 9999999999999997 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcCCCCCCCcccccCCcccccccCCCCCCCcchhhhhhhhhhhccccccccccccCCchhHHhhhcCCchHHH
Q 003929 662 VKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFI 741 (786)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG~S~~fi 741 (786)
+.++.++ +|++||+.+++++..... .+ ..+++++ +++ .++.+.++++||+|..||
T Consensus 713 ~~~~~~~--------~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~------~~~---~~~~~~~~~rfG~S~~fi 767 (1135)
T PLN02248 713 RAKEHSG--------CFGSCKFTKKKKKETSAS-------EP-EEQPDLE------DDD---DLELSLLPKRFGNSTMFA 767 (1135)
T ss_pred ccccccc--------cccccccccccccccccc-------cc-ccccccc------ccc---hhhhhhhhhhhccchhhh
Confidence 8654432 133344443332111100 00 0022211 111 134568899999999999
Q ss_pred hhhhh-hcCCCC-------------------CCCChhhHHHHHHHcccccCCCCCcCCCcceeeC
Q 003929 742 ASTLK-EAGGVP-------------------TGASTASLLNEAIHVISCGYEDKTDWGKEVCSRY 786 (786)
Q Consensus 742 ~S~~~-e~~~~~-------------------~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGwiY 786 (786)
+|+.. +.++.+ ....++++++||++||||+||++|+||+||||+|
T Consensus 768 ~S~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~~Y 832 (1135)
T PLN02248 768 ASIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDAATVAEAISVISCWYEDKTEWGDRVGWIY 832 (1135)
T ss_pred hhhHHHhhcccccccccccccccccccccccccCCcHHHHHHHHhhcccccccCCchhhhcCeee
Confidence 99963 322221 2224568999999999999999999999999998
No 8
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=9.2e-144 Score=1226.65 Aligned_cols=445 Identities=37% Similarity=0.690 Sum_probs=399.4
Q ss_pred CCCCceeeeccCCCCcchhHHHHHHHHHHHHHHHhhhhcccCCcchhHHHHHHHHHHHHHHHHHHhhcccccccccchhh
Q 003929 270 GRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYL 349 (786)
Q Consensus 270 ~~~pL~rk~~i~~~~~~~yR~~ii~~lv~l~~yl~wRi~~~~~~a~~lWl~~~v~Ei~faf~wiL~q~~kw~Pv~R~t~~ 349 (786)
+.+||++++++++++ ||++.+++|+++++||+||++++++++ ++|+++++||+||+|+|+|+|++||+|++|.++|
T Consensus 7 ~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p 82 (756)
T PLN02190 7 SLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYP 82 (756)
T ss_pred CCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCCc
Confidence 457999999999984 899999999999999999999998877 6899999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhh
Q 003929 350 DRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKW 429 (786)
Q Consensus 350 drL~~r~e~~~~~~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~W 429 (786)
++|++|++ +||+||||||||||++|||++|+||||||||+|||++||+|||||||+|+||||||.|||+|||+|
T Consensus 83 ~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~W 156 (756)
T PLN02190 83 DRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIW 156 (756)
T ss_pred HHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhh
Confidence 99999983 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHhhhcCCCCCchhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCC--CCCCCCC
Q 003929 430 VPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDG--TPWPGNN 507 (786)
Q Consensus 430 vPFCkK~~IepRaPe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dg--t~W~g~~ 507 (786)
|||||||+|||||||+||+++.+ .+..++|++||++||+||||||+||+++. ....|.+.++ .+|+++.
T Consensus 157 vPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~~ 227 (756)
T PLN02190 157 VPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNTK 227 (756)
T ss_pred cccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCCC
Confidence 99999999999999999998543 33458999999999999999999999974 2356666655 6899988
Q ss_pred ccCCCcceeeeccCCCcccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHH
Q 003929 508 VRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALR 587 (786)
Q Consensus 508 ~rdHp~iIqVll~~~g~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr 587 (786)
++|||+|||||++++++ +.+|++||+||||||||||+++||+||||||+|+||||+|||||||||||||||+|||+++|
T Consensus 228 ~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r 306 (756)
T PLN02190 228 PNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVR 306 (756)
T ss_pred CCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHH
Confidence 99999999999999764 45788999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccCCCC-cceEEEecCccccCCCCCCCccchhhhhhhhhccccccCCCceecccchhhhhhhhcCCCCCCCCCC
Q 003929 588 EAMCFMMDPTSG-KKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKP 666 (786)
Q Consensus 588 ~amcfflDp~~g-~~vafVQtPQ~F~nid~~D~~~n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL~G~~Pp~~~~~ 666 (786)
+|||||||++.+ +++|||||||+|+ |+|+|++++||+++++|+||+|||+|+||||+|||+||||++||...+.
T Consensus 307 ~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~~ 381 (756)
T PLN02190 307 QAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLEDD 381 (756)
T ss_pred HhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCccccccc
Confidence 999999998744 5899999999998 7899999999999999999999999999999999999999999864321
Q ss_pred CCCcCCCCCCCcccccCCcccccccCCCCCCCcchhhhhhhhhhhccccccccccccCCchhHHhhhcCCchHHHhhhhh
Q 003929 667 PRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLK 746 (786)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG~S~~fi~S~~~ 746 (786)
... .+ . . ++. .+++.+++++||+|++||+|+..
T Consensus 382 ~~~---------------------~~------~------------------~-~~~-~~~~~~~~~~fg~s~~f~~s~~~ 414 (756)
T PLN02190 382 GSL---------------------SS------V------------------A-TRE-FLAEDSLAREFGNSKEMVKSVVD 414 (756)
T ss_pred ccc---------------------cc------c------------------c-ccc-ccchhhhhhhcCCcHHHHHHHHH
Confidence 100 00 0 0 001 23456778999999999999986
Q ss_pred hcCCCCC-CCChhhHHHHHHHcccccCCCCCcCCCcceeeC
Q 003929 747 EAGGVPT-GASTASLLNEAIHVISCGYEDKTDWGKEVCSRY 786 (786)
Q Consensus 747 e~~~~~~-~~~~~~~l~eA~~V~sC~YE~~T~WG~evGwiY 786 (786)
+.++.+. ..+.+++++||++||||+||++|+||+||||+|
T Consensus 415 ~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~y 455 (756)
T PLN02190 415 ALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLY 455 (756)
T ss_pred HhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCccc
Confidence 5543332 334578999999999999999999999999998
No 9
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=1.8e-144 Score=1229.64 Aligned_cols=415 Identities=70% Similarity=1.201 Sum_probs=392.8
Q ss_pred eeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCchhhh
Q 003929 368 IDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYF 447 (786)
Q Consensus 368 VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaPe~YF 447 (786)
||||||||||++|||++|+|||||+||+|||++||+|||||||||+||||||.|||+|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCCcccC
Q 003929 448 AQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDI 527 (786)
Q Consensus 448 s~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g~~d~ 527 (786)
+++.++++++++++|++||++|||||||||+|||+|+++.+++|+++|+|+||++|||++++|||+|||||++++++.|+
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEec
Q 003929 528 EGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQF 607 (786)
Q Consensus 528 ~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQt 607 (786)
+|++||+||||||||||+++||+||||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCccchhhhhhhhhccccccCCCceecccchhhhhhhhcCCCCCCCCCCCCCcCCCCCCCcccccCCccc
Q 003929 608 PQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPVKKKPPRKTCNCLPKWCCCCCRSRKK 687 (786)
Q Consensus 608 PQ~F~nid~~D~~~n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL~G~~Pp~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (786)
||+|+|++++|+|+|++.+||+++++|+||+|||+|+||||+|||+||||++||...+..+.+| .+|+||++.+|+
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~----~~~~~c~~~~k~ 316 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTC----CCCSCCFGRRKK 316 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcce----eeeecccCCccc
Confidence 9999999999999999999999999999999999999999999999999999998877666554 124455555554
Q ss_pred ccccCCC----CCCCcchhhhhhhhhhhccccccccccccCCchhHHhhhcCCchHHHhhhhhhcCCCCCCCChhhHHHH
Q 003929 688 SKKGKSN----KKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFIASTLKEAGGVPTGASTASLLNE 763 (786)
Q Consensus 688 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG~S~~fi~S~~~e~~~~~~~~~~~~~l~e 763 (786)
+++.++. .++.+++.+++++++++++.++.+++++..+++++|+++||+|++||+|+.+++++++.+.+++++|+|
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~E 396 (720)
T PF03552_consen 317 KKSKKKPKKRASKRRESSSPIFALEDIEEGAEGSDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLEE 396 (720)
T ss_pred ccccccchhccccccccccccccccccccccccchhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 4332222 245778889999999999988888898999999999999999999999999988888989999999999
Q ss_pred HHHcccccCCCCCcCCCcceeeC
Q 003929 764 AIHVISCGYEDKTDWGKEVCSRY 786 (786)
Q Consensus 764 A~~V~sC~YE~~T~WG~evGwiY 786 (786)
|++||||+||++|+||+||||||
T Consensus 397 A~~V~sC~YE~~T~WGkevGwiY 419 (720)
T PF03552_consen 397 AIHVASCGYEDKTEWGKEVGWIY 419 (720)
T ss_pred HHHHhcCCccccCCcccccceEE
Confidence 99999999999999999999999
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=7.2e-137 Score=1173.78 Aligned_cols=427 Identities=38% Similarity=0.689 Sum_probs=387.1
Q ss_pred CCCCCceeeeccCCCCcchhHHHHHHHHHHHHHHHhhhhcccCCcc-hhHHHHHHHHHHHHHHHHHHhhcccccccccch
Q 003929 269 EGRQPLSRKLPISSSKISPYRLIILLRLVILGLFFHYRILHPVNDA-YGLWLTSVICEIWFAVSWILDQFPKWDPIVRET 347 (786)
Q Consensus 269 ~~~~pL~rk~~i~~~~~~~yR~~ii~~lv~l~~yl~wRi~~~~~~a-~~lWl~~~v~Ei~faf~wiL~q~~kw~Pv~R~t 347 (786)
...+||+++++++++. +||+++++++++++++|+||+++++.++ .|+|+++++||+||+|+|+|+|++||+||+|.|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 3557999999999885 5999999999999999999999977655 889999999999999999999999999999999
Q ss_pred hhhhhhhhhhcCCCCCCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhh
Q 003929 348 YLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFAR 427 (786)
Q Consensus 348 ~~drL~~r~e~~~~~~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~ 427 (786)
|+|||+++++ .++||+||||||||||++|||++|+|||||+||+|||++||+|||||||||+||||||.|||+|||
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999987663 368999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHhhhcCCCCCchhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCC-----CC
Q 003929 428 KWVPFCKKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDG-----TP 502 (786)
Q Consensus 428 ~WvPFCkK~~IepRaPe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dg-----t~ 502 (786)
+||||||||+|||||||+||+++. ++|++||++||+||||||+|||+++++ +++|++ |.|+++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 999999999999999999999873 467899999999999999999999966 888876 554433 68
Q ss_pred CCCCC-ccCCCcceeeeccCCCcccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCC
Q 003929 503 WPGNN-VRDHPGMIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYIN 581 (786)
Q Consensus 503 W~g~~-~rdHp~iIqVll~~~g~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yin 581 (786)
|+++. ++|||+|||||++++++.|.+|++||+||||||||||+++||+||||||++|||||+|||||||||||||||+|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 98876 58999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCccchhhhhhhhhccccccCCCceecccchhhhhhhhcCCCCC
Q 003929 582 NSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAP 661 (786)
Q Consensus 582 np~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL~G~~Pp 661 (786)
||++|++|||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998331
Q ss_pred CCCCCCCCcCCCCCCCcccccCCcccccccCCCCCCCcchhhhhhhhhhhccccccccccccCCchhHHhhhcCCchHHH
Q 003929 662 VKKKPPRKTCNCLPKWCCCCCRSRKKSKKGKSNKKNKDTSKQIYALENIEEGIEGIDNEKSSLMPQIKFEKKFGQSPVFI 741 (786)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FG~S~~fi 741 (786)
... +++. .++++..
T Consensus 393 ~~~-------------------------------------------~~~~---------------------~~~~~~~-- 406 (734)
T PLN02893 393 LIL-------------------------------------------PEIP---------------------ELNPDHL-- 406 (734)
T ss_pred ccc-------------------------------------------hhhh---------------------hcccccc--
Confidence 000 0000 0111111
Q ss_pred hhhhhhcCCCCCCCChhhHHHHHHHcccccCCCCCcCCCcceeeC
Q 003929 742 ASTLKEAGGVPTGASTASLLNEAIHVISCGYEDKTDWGKEVCSRY 786 (786)
Q Consensus 742 ~S~~~e~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGwiY 786 (786)
..+++...++++||++|+||+||++|+||++|||+|
T Consensus 407 ---------~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~y 442 (734)
T PLN02893 407 ---------VDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRY 442 (734)
T ss_pred ---------cccccchHHHHHHhhhccccccccCCccccccceEe
Confidence 123345677999999999999999999999999998
No 11
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=1.1e-44 Score=312.83 Aligned_cols=80 Identities=78% Similarity=1.481 Sum_probs=42.1
Q ss_pred cccccccCCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccccCCCCCCCCCCCCCcc
Q 003929 28 VTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEEEDDTD 107 (786)
Q Consensus 28 ~~~~~~~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~kGsprV~Gd~ee~~~d 107 (786)
+||++++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|||||||+|
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gDeeedd~d 80 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGDEEEDDVD 80 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS-----S-
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCCccccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999998875
No 12
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=3.8e-34 Score=332.48 Aligned_cols=255 Identities=24% Similarity=0.400 Sum_probs=198.5
Q ss_pred HHHHHHH-HHHHHHHHhhhhcccCCcc----hhHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhcCCCCC
Q 003929 289 RLIILLR-LVILGLFFHYRILHPVNDA----YGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPS 363 (786)
Q Consensus 289 R~~ii~~-lv~l~~yl~wRi~~~~~~a----~~lWl~~~v~Ei~faf~wiL~q~~kw~Pv~R~t~~drL~~r~e~~~~~~ 363 (786)
|++.++. +++.++|++||++.+++.. ..+.++++++|+++.++.++..+..+.|.+|.+.+. +..++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~~~--------~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPVPL--------PLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccCC--------CCCcc
Confidence 6665444 4556899999999876533 235678999999999988888888888887754321 11246
Q ss_pred CCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCc
Q 003929 364 DLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAP 443 (786)
Q Consensus 364 ~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaP 443 (786)
.+|.|||+||| |||++.++.+|+.+++++|||.+|+.|||+|||++.=|.....++
T Consensus 129 ~~P~VsViIP~---yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~--------------------- 184 (713)
T TIGR03030 129 EWPTVDVFIPT---YNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPE--------------------- 184 (713)
T ss_pred cCCeeEEEEcC---CCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhh---------------------
Confidence 79999999999 899999999999999999999999999999999876332111110
Q ss_pred hhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCC
Q 003929 444 EWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNG 523 (786)
Q Consensus 444 e~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g 523 (786)
.. ++.+-+..+++++++
T Consensus 185 -------------------~~-------~~~~~~~~~~~l~~~------------------------------------- 201 (713)
T TIGR03030 185 -------------------QA-------EAAQRREELKEFCRK------------------------------------- 201 (713)
T ss_pred -------------------hh-------hhhhhHHHHHHHHHH-------------------------------------
Confidence 11 111111223334321
Q ss_pred cccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc-cCCCCcce
Q 003929 524 VRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKI 602 (786)
Q Consensus 524 ~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl-Dp~~g~~v 602 (786)
..+.|+.|++ ++|+||||||++++. ++|+||+++|||+ ++.|++|++++++|. ||+ +
T Consensus 202 ---------~~v~yi~r~~----n~~~KAgnLN~al~~----a~gd~Il~lDAD~-v~~pd~L~~~v~~f~~dp~----v 259 (713)
T TIGR03030 202 ---------LGVNYITRPR----NVHAKAGNINNALKH----TDGELILIFDADH-VPTRDFLQRTVGWFVEDPK----L 259 (713)
T ss_pred ---------cCcEEEECCC----CCCCChHHHHHHHHh----cCCCEEEEECCCC-CcChhHHHHHHHHHHhCCC----E
Confidence 1278999987 678999999999997 6899999999999 699999999999996 664 8
Q ss_pred EEEecCccccCCCCC-------CCccchhhhhhhhhccccccCCCceecccchhhhhhhh---cCCCC
Q 003929 603 CYVQFPQRFDGIDRH-------DRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL---YGYDA 660 (786)
Q Consensus 603 afVQtPQ~F~nid~~-------D~~~n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL---~G~~P 660 (786)
++||+||.|+|.++- +.+.+++++||..++.|+|.++++++|||++++||+|| .|++.
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~ 327 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAG 327 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCC
Confidence 999999999998752 34567788999999999999999999999999999999 45654
No 13
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=1.3e-33 Score=331.91 Aligned_cols=236 Identities=25% Similarity=0.418 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHhhhhcccCCcc----hhHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhcCCCCCCCC
Q 003929 291 IILLRLVILGLFFHYRILHPVNDA----YGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLA 366 (786)
Q Consensus 291 ~ii~~lv~l~~yl~wRi~~~~~~a----~~lWl~~~v~Ei~faf~wiL~q~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP 366 (786)
++++.+++.++|++||++.+++.. ..+.++++++|+++.++.++..+..+.|..|.+.+ +. ...+.+|
T Consensus 189 l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~~--~~------~~~~~~P 260 (852)
T PRK11498 189 LIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVP--LP------KDMSLWP 260 (852)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC--CC------cccCCCC
Confidence 355566677899999999876532 44567899999999988888888777788775321 11 1235689
Q ss_pred ceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCchhh
Q 003929 367 DIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWY 446 (786)
Q Consensus 367 ~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaPe~Y 446 (786)
.|||+||| ||||..++.+||.+++++|||.+|+.|||+|||.++ |+.+
T Consensus 261 ~VsViIPt---YNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D-------~t~~---------------------- 308 (852)
T PRK11498 261 TVDIFVPT---YNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGRE-------EFRQ---------------------- 308 (852)
T ss_pred cEEEEEec---CCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCCh-------HHHH----------------------
Confidence 99999999 899999999999999999999999999999999886 1111
Q ss_pred hhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCCccc
Q 003929 447 FAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRD 526 (786)
Q Consensus 447 Fs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g~~d 526 (786)
++++
T Consensus 309 ------------------------------------la~~---------------------------------------- 312 (852)
T PRK11498 309 ------------------------------------FAQE---------------------------------------- 312 (852)
T ss_pred ------------------------------------HHHH----------------------------------------
Confidence 1110
Q ss_pred CcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc-cCCCCcceEEE
Q 003929 527 IEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYV 605 (786)
Q Consensus 527 ~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl-Dp~~g~~vafV 605 (786)
..+.|+.|++ +.|+||||+|++++. ++|+||++||||+ ++.+++|+++|++|. ||+ +|+|
T Consensus 313 ------~~v~yI~R~~----n~~gKAGnLN~aL~~----a~GEyIavlDAD~-ip~pdfL~~~V~~f~~dP~----VglV 373 (852)
T PRK11498 313 ------VGVKYIARPT----HEHAKAGNINNALKY----AKGEFVAIFDCDH-VPTRSFLQMTMGWFLKDKK----LAMM 373 (852)
T ss_pred ------CCcEEEEeCC----CCcchHHHHHHHHHh----CCCCEEEEECCCC-CCChHHHHHHHHHHHhCCC----eEEE
Confidence 0157888876 567999999999997 6899999999999 699999999999875 765 8999
Q ss_pred ecCccccCCCCCC-------CccchhhhhhhhhccccccCCCceecccchhhhhhhh---cCCCCC
Q 003929 606 QFPQRFDGIDRHD-------RYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL---YGYDAP 661 (786)
Q Consensus 606 QtPQ~F~nid~~D-------~~~n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL---~G~~Pp 661 (786)
|+||.|+|.|+-. .+.++++.||..++.|++.++++++|||++++||+|| .|++..
T Consensus 374 Qtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd~~ 439 (852)
T PRK11498 374 QTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIAVE 439 (852)
T ss_pred EcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHHHHhcCCCCC
Confidence 9999999977631 2456788999999999999999999999999999999 566543
No 14
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.87 E-value=7.9e-22 Score=204.34 Aligned_cols=110 Identities=22% Similarity=0.357 Sum_probs=91.3
Q ss_pred CcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc-cCCCCcceEEEecCccc
Q 003929 533 PRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQFPQRF 611 (786)
Q Consensus 533 P~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl-Dp~~g~~vafVQtPQ~F 611 (786)
++++|+.|+++ .++||||||++++..+ ++++||+++|||+ ++.|++|++++.+|. ||+ +|+||+||+|
T Consensus 67 ~~v~~~~r~~~----~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~-~~~p~~l~~~v~~~~~~~~----vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRREN----TGRKAGNIADFCRRWG--SRYDYMVVLDADS-LMSGDTIVRLVRRMEANPR----AGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCCC----CCccHHHHHHHHHHhC--CCCCEEEEEeCCC-CCCHHHHHHHHHHHHhCCC----EEEEeCCcee
Confidence 56999999984 5689999999998633 5789999999999 699999999999997 875 8899999999
Q ss_pred cCCCCCCCccc----hhhhhhhhhccccccCCC--ceecccchhhhhhhh
Q 003929 612 DGIDRHDRYSN----RNVVFFDINMKGLDGIQG--PIYVGTGCVFRRQAL 655 (786)
Q Consensus 612 ~nid~~D~~~n----~~~vFf~ii~~g~Dg~~g--~~~~GTgcv~RR~AL 655 (786)
.|.+. .+.. ++..|..+++.|++.|++ .+|+||+.++||+||
T Consensus 136 ~n~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al 183 (254)
T cd04191 136 IGAET--LFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAF 183 (254)
T ss_pred ECCCC--HHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHH
Confidence 98763 1221 245666778888887654 689999999999998
No 15
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.84 E-value=3.7e-20 Score=215.47 Aligned_cols=250 Identities=18% Similarity=0.150 Sum_probs=164.1
Q ss_pred hhHHHHHHHHHHHHHHHhhhhcccCCcchh---------HHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhh
Q 003929 287 PYRLIILLRLVILGLFFHYRILHPVNDAYG---------LWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYE 357 (786)
Q Consensus 287 ~yR~~ii~~lv~l~~yl~wRi~~~~~~a~~---------lWl~~~v~Ei~faf~wiL~q~~kw~Pv~R~t~~drL~~r~e 357 (786)
..|++.++..++...|..|+........-+ +-.+++..+.+.+.+-++..+.... .|... .+...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCcccc
Confidence 457777777778888999998775432211 1123344444444444444333211 11111 0100000
Q ss_pred cCCCCCCCCceeEEeccCCCCCCCHHHH----HHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHH
Q 003929 358 KEGKPSDLADIDIFVSTVDPMKEPPLIT----ANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFC 433 (786)
Q Consensus 358 ~~~~~~~LP~VDVFV~TaDP~kEPp~v~----~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFC 433 (786)
.+......|.|+|+||+ |||++..+ ..|+.|+.+.||| +++.+||+|||..+-+-.
T Consensus 116 ~~~~~~~~~~VaVliP~---yNEd~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~---------------- 175 (691)
T PRK05454 116 GDPPPPPEARTAILMPI---YNEDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA---------------- 175 (691)
T ss_pred cCCCCCCCCceEEEEeC---CCCChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH----------------
Confidence 01123568999999999 79999754 4556677789998 589999999998872100
Q ss_pred hhhcCCCCCchhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCc
Q 003929 434 KKFKIEPRAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPG 513 (786)
Q Consensus 434 kK~~IepRaPe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~ 513 (786)
.|+ +.|++ |.++..
T Consensus 176 ------------------------------~e~----~~~~~-------L~~~~~------------------------- 189 (691)
T PRK05454 176 ------------------------------AEE----AAWLE-------LRAELG------------------------- 189 (691)
T ss_pred ------------------------------HHH----HHHHH-------HHHhcC-------------------------
Confidence 010 12222 221100
Q ss_pred ceeeeccCCCcccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhccc
Q 003929 514 MIQVFLGQNGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM 593 (786)
Q Consensus 514 iIqVll~~~g~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcff 593 (786)
.-+++.|..|++ |.++||||+|.+++.++ .+.+||++||||+ ++.+++|++++.+|
T Consensus 190 -----------------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs-~m~~d~L~~lv~~m 245 (691)
T PRK05454 190 -----------------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADS-LMSGDTLVRLVRLM 245 (691)
T ss_pred -----------------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCC-CCCHHHHHHHHHHH
Confidence 013588988876 56799999999999866 5779999999999 69999999999999
Q ss_pred c-cCCCCcceEEEecCccccCCCCCCCccch----hhhhhhhhccccccCC--Cceecccchhhhhhhhc
Q 003929 594 M-DPTSGKKICYVQFPQRFDGIDRHDRYSNR----NVVFFDINMKGLDGIQ--GPIYVGTGCVFRRQALY 656 (786)
Q Consensus 594 l-Dp~~g~~vafVQtPQ~F~nid~~D~~~n~----~~vFf~ii~~g~Dg~~--g~~~~GTgcv~RR~AL~ 656 (786)
. ||+ +|+||+|+.++|.+. .++.- ..++......|++.++ ...|+|+|+++||+|+.
T Consensus 246 ~~dP~----vGlVQt~~~~~n~~s--lfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~ 309 (691)
T PRK05454 246 EANPR----AGLIQTLPVAVGADT--LFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFA 309 (691)
T ss_pred hhCcC----EEEEeCCccCcCCCC--HHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHH
Confidence 7 875 889999999998752 22221 2344456677888766 46799999999999994
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=1.3e-17 Score=179.32 Aligned_cols=169 Identities=26% Similarity=0.390 Sum_probs=124.4
Q ss_pred CCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCch
Q 003929 365 LADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPE 444 (786)
Q Consensus 365 LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaPe 444 (786)
+|.|+|+||+ |||++.++.+|+.|++++|||. +.|+|.|||+++-|++-+ ++++.+
T Consensus 53 ~p~vsviiP~---ynE~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~--------------~~~~~~----- 108 (439)
T COG1215 53 LPKVSVIIPA---YNEEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEIL--------------EELGAE----- 108 (439)
T ss_pred CCceEEEEec---CCCchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHH--------------HHHHhh-----
Confidence 6999999999 8999999999999999999997 789999999998333222 121100
Q ss_pred hhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCCc
Q 003929 445 WYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGV 524 (786)
Q Consensus 445 ~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g~ 524 (786)
| +..++
T Consensus 109 ----------------------------~--------------------------------------~~~~~-------- 114 (439)
T COG1215 109 ----------------------------Y--------------------------------------GPNFR-------- 114 (439)
T ss_pred ----------------------------c--------------------------------------CcceE--------
Confidence 0 00001
Q ss_pred ccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEE
Q 003929 525 RDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICY 604 (786)
Q Consensus 525 ~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vaf 604 (786)
++|. ...++.|+||+|.++.. +.+++|+++|||+ ++.|++|++++..|.|+..+ |.
T Consensus 115 ----------~~~~------~~~~~gK~~al~~~l~~----~~~d~V~~~DaD~-~~~~d~l~~~~~~f~~~~~~---~v 170 (439)
T COG1215 115 ----------VIYP------EKKNGGKAGALNNGLKR----AKGDVVVILDADT-VPEPDALRELVSPFEDPPVG---AV 170 (439)
T ss_pred ----------EEec------cccCccchHHHHHHHhh----cCCCEEEEEcCCC-CCChhHHHHHHhhhcCCCee---EE
Confidence 1111 12567999999999987 4599999999999 79999999999999987643 89
Q ss_pred EecCccccCCCCCCCccchhh-----hhhhhhccccccCCCceecccchhhhhhhh
Q 003929 605 VQFPQRFDGIDRHDRYSNRNV-----VFFDINMKGLDGIQGPIYVGTGCVFRRQAL 655 (786)
Q Consensus 605 VQtPQ~F~nid~~D~~~n~~~-----vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL 655 (786)
+|+||.+.+.++...++..+. .|+-....+.+.....+++|++.++||+||
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL 226 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSAL 226 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHH
Confidence 999999988764222222222 222233334444367889999999999999
No 17
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.62 E-value=3.6e-15 Score=145.84 Aligned_cols=168 Identities=31% Similarity=0.499 Sum_probs=130.1
Q ss_pred CceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCchh
Q 003929 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (786)
Q Consensus 366 P~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaPe~ 445 (786)
|.|.|+||| |+|++.++..++.|+++.+||.+++.++|.|||.+.-|.+-
T Consensus 1 p~vsviip~---~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~--------------------------- 50 (234)
T cd06421 1 PTVDVFIPT---YNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRAL--------------------------- 50 (234)
T ss_pred CceEEEEec---CCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHH---------------------------
Confidence 679999999 79998999999999999999999899999999987622111
Q ss_pred hhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCCcc
Q 003929 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (786)
Q Consensus 446 YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g~~ 525 (786)
++.+..+
T Consensus 51 ----------------------------------~~~~~~~--------------------------------------- 57 (234)
T cd06421 51 ----------------------------------AAELGVE--------------------------------------- 57 (234)
T ss_pred ----------------------------------HHHhhcc---------------------------------------
Confidence 1111000
Q ss_pred cCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEE
Q 003929 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (786)
Q Consensus 526 d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafV 605 (786)
..+.|+.+++ +...|+||+|.+++. .+++||+++|+|- +..|++|.+.+..|.+ ++++++|
T Consensus 58 -------~~~~~~~~~~----~~~~~~~~~n~~~~~----a~~d~i~~lD~D~-~~~~~~l~~l~~~~~~---~~~~~~v 118 (234)
T cd06421 58 -------YGYRYLTRPD----NRHAKAGNLNNALAH----TTGDFVAILDADH-VPTPDFLRRTLGYFLD---DPKVALV 118 (234)
T ss_pred -------cCceEEEeCC----CCCCcHHHHHHHHHh----CCCCEEEEEcccc-CcCccHHHHHHHHHhc---CCCeEEE
Confidence 0135555554 345899999999986 4799999999999 5899999999999975 2348899
Q ss_pred ecCccccCCCCCC----CccchhhhhhhhhccccccCCCceecccchhhhhhhh
Q 003929 606 QFPQRFDGIDRHD----RYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL 655 (786)
Q Consensus 606 QtPQ~F~nid~~D----~~~n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL 655 (786)
++++.+.+.+..+ .+......|+..+..+...++..++.|++.++||++|
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~ 172 (234)
T cd06421 119 QTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREAL 172 (234)
T ss_pred ecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHH
Confidence 9999998776542 2333455666677777766778889999999999999
No 18
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.61 E-value=9.5e-15 Score=161.52 Aligned_cols=170 Identities=19% Similarity=0.205 Sum_probs=122.6
Q ss_pred CCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCc
Q 003929 364 DLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAP 443 (786)
Q Consensus 364 ~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaP 443 (786)
..|.|+|+|++ |||+.. +.+|+.|+++.+|| ++.|+|.|||.++-|.+.+.+
T Consensus 73 ~~p~vsViIP~---yNE~~~-i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~---------------------- 124 (444)
T PRK14583 73 GHPLVSILVPC---FNEGLN-ARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA---------------------- 124 (444)
T ss_pred CCCcEEEEEEe---CCCHHH-HHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH----------------------
Confidence 57999999999 799976 68999999999999 488999999988733322211
Q ss_pred hhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCC
Q 003929 444 EWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNG 523 (786)
Q Consensus 444 e~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g 523 (786)
+.++
T Consensus 125 ---------------------------------------~~~~------------------------------------- 128 (444)
T PRK14583 125 ---------------------------------------LLAE------------------------------------- 128 (444)
T ss_pred ---------------------------------------HHHh-------------------------------------
Confidence 1100
Q ss_pred cccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc-cCCCCcce
Q 003929 524 VRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKI 602 (786)
Q Consensus 524 ~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl-Dp~~g~~v 602 (786)
.|++.++.++++ ..||+|+|.+++. +++++|+++|+|. +++|++|++.+-.|. || ++
T Consensus 129 --------~~~v~vv~~~~n-----~Gka~AlN~gl~~----a~~d~iv~lDAD~-~~~~d~L~~lv~~~~~~~----~~ 186 (444)
T PRK14583 129 --------DPRLRVIHLAHN-----QGKAIALRMGAAA----ARSEYLVCIDGDA-LLDKNAVPYLVAPLIANP----RT 186 (444)
T ss_pred --------CCCEEEEEeCCC-----CCHHHHHHHHHHh----CCCCEEEEECCCC-CcCHHHHHHHHHHHHhCC----Ce
Confidence 122344444432 2599999999987 5799999999999 799999999998776 44 58
Q ss_pred EEEecCccccCCCCCCCccc----hhhhhhhhhccccccCCCce-ecccchhhhhhhh---cCCCCC
Q 003929 603 CYVQFPQRFDGIDRHDRYSN----RNVVFFDINMKGLDGIQGPI-YVGTGCVFRRQAL---YGYDAP 661 (786)
Q Consensus 603 afVQtPQ~F~nid~~D~~~n----~~~vFf~ii~~g~Dg~~g~~-~~GTgcv~RR~AL---~G~~Pp 661 (786)
+.||..++..|.. ..++. +...++..+.++...++..+ ..|++++|||+|| .|+++.
T Consensus 187 g~v~g~~~~~~~~--~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~~~ 251 (444)
T PRK14583 187 GAVTGNPRIRTRS--TLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWSPD 251 (444)
T ss_pred EEEEccceecCCC--cchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHHHcCCCCCC
Confidence 8999988766532 22222 33445556666666666655 4699999999999 445544
No 19
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.54 E-value=1.2e-13 Score=137.01 Aligned_cols=175 Identities=20% Similarity=0.252 Sum_probs=122.5
Q ss_pred CceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCchh
Q 003929 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (786)
Q Consensus 366 P~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaPe~ 445 (786)
|.|.|+|++ |||.. .+..++.|+++.+||.+++.|+|.|| ++.=|+..+.+.. +
T Consensus 1 p~vSViIp~---yNe~~-~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~~---~------------------ 54 (232)
T cd06437 1 PMVTVQLPV---FNEKY-VVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREIV---E------------------ 54 (232)
T ss_pred CceEEEEec---CCcHH-HHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHHH---H------------------
Confidence 679999999 89965 67899999999999999999999998 6653444332210 0
Q ss_pred hhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCCcc
Q 003929 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (786)
Q Consensus 446 YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g~~ 525 (786)
... .
T Consensus 55 ------------------------------------~~~-------~--------------------------------- 58 (232)
T cd06437 55 ------------------------------------EYA-------A--------------------------------- 58 (232)
T ss_pred ------------------------------------HHh-------h---------------------------------
Confidence 000 0
Q ss_pred cCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEE
Q 003929 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (786)
Q Consensus 526 d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafV 605 (786)
.-+.+.++.+.+++| +||+|+|.+++. ..++||+++|+|. ++.|++|.+++.++.+|+ +++|
T Consensus 59 -----~~~~i~~~~~~~~~G----~k~~a~n~g~~~----a~~~~i~~~DaD~-~~~~~~l~~~~~~~~~~~----v~~v 120 (232)
T cd06437 59 -----QGVNIKHVRRADRTG----YKAGALAEGMKV----AKGEYVAIFDADF-VPPPDFLQKTPPYFADPK----LGFV 120 (232)
T ss_pred -----cCCceEEEECCCCCC----CchHHHHHHHHh----CCCCEEEEEcCCC-CCChHHHHHhhhhhcCCC----eEEE
Confidence 013467777776554 699999999987 4799999999999 589999999887776664 8899
Q ss_pred ecCccccCCCCCCC--c-cchhhhhhhhhccccccCCCc-eecccchhhhhhhh---cCCCC
Q 003929 606 QFPQRFDGIDRHDR--Y-SNRNVVFFDINMKGLDGIQGP-IYVGTGCVFRRQAL---YGYDA 660 (786)
Q Consensus 606 QtPQ~F~nid~~D~--~-~n~~~vFf~ii~~g~Dg~~g~-~~~GTgcv~RR~AL---~G~~P 660 (786)
|....+.|.+.+-. + .-....+|...+.+....+.. .++|++++|||++| .|+++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~vgg~~~ 182 (232)
T cd06437 121 QTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFFNFNGTAGVWRKECIEDAGGWNH 182 (232)
T ss_pred ecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeEEeccchhhhhHHHHHHhCCCCC
Confidence 99877665543211 0 011222444444555444443 36899999999998 45644
No 20
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.48 E-value=6.7e-13 Score=147.03 Aligned_cols=122 Identities=22% Similarity=0.351 Sum_probs=91.4
Q ss_pred CCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCC
Q 003929 363 SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRA 442 (786)
Q Consensus 363 ~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRa 442 (786)
+.+|.|+|+||+ |||. ..+.+||.|+++.+||.+++.|+|.|||.+.=|.+.+.+
T Consensus 46 ~~~P~vsVIIP~---yNe~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~--------------------- 100 (439)
T TIGR03111 46 GKLPDITIIIPV---YNSE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCR--------------------- 100 (439)
T ss_pred CCCCCEEEEEEe---CCCh-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHH---------------------
Confidence 568999999999 7988 788999999999999999999999999998733322211
Q ss_pred chhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCC
Q 003929 443 PEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQN 522 (786)
Q Consensus 443 Pe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~ 522 (786)
+.++ +|. +
T Consensus 101 ----------------------------------------~~~~------------------------~~~-v------- 108 (439)
T TIGR03111 101 ----------------------------------------AQNE------------------------FPG-L------- 108 (439)
T ss_pred ----------------------------------------HHHh------------------------CCC-e-------
Confidence 1100 000 0
Q ss_pred CcccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc-cCCCCcc
Q 003929 523 GVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKK 601 (786)
Q Consensus 523 g~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl-Dp~~g~~ 601 (786)
.++++ ++ .+.||+|+|++++. ++++||+++|+|. +++|++|++++..|. ||+
T Consensus 109 -----------~v~~~--~~-----~~Gka~AlN~gl~~----s~g~~v~~~DaD~-~~~~d~L~~l~~~f~~~~~---- 161 (439)
T TIGR03111 109 -----------SLRYM--NS-----DQGKAKALNAAIYN----SIGKYIIHIDSDG-KLHKDAIKNMVTRFENNPD---- 161 (439)
T ss_pred -----------EEEEe--CC-----CCCHHHHHHHHHHH----ccCCEEEEECCCC-CcChHHHHHHHHHHHhCCC----
Confidence 02222 11 24799999999987 5699999999999 689999999999997 554
Q ss_pred eEEEecC
Q 003929 602 ICYVQFP 608 (786)
Q Consensus 602 vafVQtP 608 (786)
++.|+..
T Consensus 162 v~~v~g~ 168 (439)
T TIGR03111 162 IHAMTGV 168 (439)
T ss_pred eEEEEeE
Confidence 5555543
No 21
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.47 E-value=5.8e-13 Score=144.78 Aligned_cols=171 Identities=21% Similarity=0.269 Sum_probs=119.4
Q ss_pred CCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCC
Q 003929 363 SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRA 442 (786)
Q Consensus 363 ~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRa 442 (786)
...|.|.|+|++ |||+ ..+.+|+.|+++.+|| ++.++|.|||.++-|.+.+.
T Consensus 51 ~~~p~vsViIp~---yne~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~---------------------- 102 (420)
T PRK11204 51 KEYPGVSILVPC---YNEG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILD---------------------- 102 (420)
T ss_pred CCCCCEEEEEec---CCCH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHH----------------------
Confidence 468999999999 7997 5678999999999999 57899999998873221111
Q ss_pred chhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCC
Q 003929 443 PEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQN 522 (786)
Q Consensus 443 Pe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~ 522 (786)
.+++
T Consensus 103 ---------------------------------------~~~~------------------------------------- 106 (420)
T PRK11204 103 ---------------------------------------RLAA------------------------------------- 106 (420)
T ss_pred ---------------------------------------HHHH-------------------------------------
Confidence 1110
Q ss_pred CcccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc-cCCCCcc
Q 003929 523 GVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKK 601 (786)
Q Consensus 523 g~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl-Dp~~g~~ 601 (786)
..|++.++.++++ ..||+|+|.+++. ++++||+++|+|. ++.|++|.+++..|. || +
T Consensus 107 --------~~~~v~~i~~~~n-----~Gka~aln~g~~~----a~~d~i~~lDaD~-~~~~d~L~~l~~~~~~~~----~ 164 (420)
T PRK11204 107 --------QIPRLRVIHLAEN-----QGKANALNTGAAA----ARSEYLVCIDGDA-LLDPDAAAYMVEHFLHNP----R 164 (420)
T ss_pred --------hCCcEEEEEcCCC-----CCHHHHHHHHHHH----cCCCEEEEECCCC-CCChhHHHHHHHHHHhCC----C
Confidence 0134566665543 2499999999987 5799999999999 699999999999985 65 4
Q ss_pred eEEEecCccccCCCCCCCccchhh----hhhhhhccccccCCCce-ecccchhhhhhhh---cCCCCC
Q 003929 602 ICYVQFPQRFDGIDRHDRYSNRNV----VFFDINMKGLDGIQGPI-YVGTGCVFRRQAL---YGYDAP 661 (786)
Q Consensus 602 vafVQtPQ~F~nid~~D~~~n~~~----vFf~ii~~g~Dg~~g~~-~~GTgcv~RR~AL---~G~~Pp 661 (786)
++.||...+..|... ..+..+. .++.....+....+..+ ..|+++++||++| .|+++.
T Consensus 165 v~~v~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~~~ 230 (420)
T PRK11204 165 VGAVTGNPRIRNRST--LLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWSTD 230 (420)
T ss_pred eEEEECCceeccchh--HHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCCCC
Confidence 889999877765421 2222221 22222333333334333 4689999999998 455543
No 22
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.44 E-value=7.8e-13 Score=132.84 Aligned_cols=174 Identities=24% Similarity=0.335 Sum_probs=122.4
Q ss_pred CceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCchh
Q 003929 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (786)
Q Consensus 366 P~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaPe~ 445 (786)
|.|.|+||+ |||+ ..+..|+.|+++.+||.+++.|+|.|||.+.-|.+-+.+
T Consensus 1 p~vsIiIp~---~Ne~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~------------------------ 52 (241)
T cd06427 1 PVYTILVPL---YKEA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA------------------------ 52 (241)
T ss_pred CeEEEEEec---CCcH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH------------------------
Confidence 789999999 8997 678999999999999988899999999987743322111
Q ss_pred hhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCCcc
Q 003929 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (786)
Q Consensus 446 YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g~~ 525 (786)
+. . +.
T Consensus 53 -------------------------------------~~-~----~~--------------------------------- 57 (241)
T cd06427 53 -------------------------------------LR-L----PS--------------------------------- 57 (241)
T ss_pred -------------------------------------hc-c----CC---------------------------------
Confidence 00 0 00
Q ss_pred cCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEE
Q 003929 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (786)
Q Consensus 526 d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafV 605 (786)
-.+++++.+.+ -..|++|+|.+++. +.|+||+.+|+|. ...|++|.+++.+|.. ...++++|
T Consensus 58 ------~~~i~~~~~~~-----~~G~~~a~n~g~~~----a~gd~i~~~DaD~-~~~~~~l~~~~~~~~~--~~~~v~~~ 119 (241)
T cd06427 58 ------IFRVVVVPPSQ-----PRTKPKACNYALAF----ARGEYVVIYDAED-APDPDQLKKAVAAFAR--LDDKLACV 119 (241)
T ss_pred ------CeeEEEecCCC-----CCchHHHHHHHHHh----cCCCEEEEEcCCC-CCChHHHHHHHHHHHh--cCCCEEEE
Confidence 01134433322 13699999999986 5799999999999 5999999999999973 12468999
Q ss_pred ecCccccCCCCCC---CccchhhhhhhhhccccccCCCce-ecccchhhhhhhh---cCCCC
Q 003929 606 QFPQRFDGIDRHD---RYSNRNVVFFDINMKGLDGIQGPI-YVGTGCVFRRQAL---YGYDA 660 (786)
Q Consensus 606 QtPQ~F~nid~~D---~~~n~~~vFf~ii~~g~Dg~~g~~-~~GTgcv~RR~AL---~G~~P 660 (786)
|.+..+++...+- .+......+|....++...++..+ +.|++.++||++| .|+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~vgg~~~ 181 (241)
T cd06427 120 QAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIPLGGTSNHFRTDVLRELGGWDP 181 (241)
T ss_pred eCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCCchHHhhHHHHHHcCCCCc
Confidence 9998887653221 111122234555566666666654 5688999999998 55544
No 23
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.43 E-value=2.4e-12 Score=127.37 Aligned_cols=109 Identities=28% Similarity=0.421 Sum_probs=76.6
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCC
Q 003929 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGI 614 (786)
Q Consensus 535 lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~ni 614 (786)
+.++..++.+ ..||||+|.+++... .+++||+++|+|- +..|++|.+.+.+|.++ ++++||+++.+.+.
T Consensus 58 i~~i~~~~~~----G~~~~a~n~g~~~a~--~~~d~i~~lD~D~-~~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~ 126 (236)
T cd06435 58 FRFFHVEPLP----GAKAGALNYALERTA--PDAEIIAVIDADY-QVEPDWLKRLVPIFDDP----RVGFVQAPQDYRDG 126 (236)
T ss_pred EEEEEcCCCC----CCchHHHHHHHHhcC--CCCCEEEEEcCCC-CcCHHHHHHHHHHhcCC----CeeEEecCccccCC
Confidence 4555555433 469999999998743 4689999999998 79999999999998765 48899998776543
Q ss_pred CCCCCcc----chhhhhhhhhccccccCCCceecccchhhhhhhh
Q 003929 615 DRHDRYS----NRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL 655 (786)
Q Consensus 615 d~~D~~~----n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL 655 (786)
... ++. .....+|...+..+...+..++.|+++++||+++
T Consensus 127 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~ 170 (236)
T cd06435 127 EES-LFKRMCYAEYKGFFDIGMVSRNERNAIIQHGTMCLIRRSAL 170 (236)
T ss_pred Ccc-HHHHHHhHHHHHHHHHHhccccccCceEEecceEEEEHHHH
Confidence 221 111 1111223333444555556678899999999998
No 24
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.40 E-value=1.1e-13 Score=135.92 Aligned_cols=172 Identities=28% Similarity=0.429 Sum_probs=98.9
Q ss_pred CceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCchh
Q 003929 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (786)
Q Consensus 366 P~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaPe~ 445 (786)
|.|.|+|++ |+|+. .+..|+.|+++.+|| ++.|+|.||+...-|...
T Consensus 1 P~v~Vvip~---~~~~~-~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~--------------------------- 47 (228)
T PF13641_consen 1 PRVSVVIPA---YNEDD-VLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEI--------------------------- 47 (228)
T ss_dssp --EEEE--B---SS-HH-HHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTT---------------------------
T ss_pred CEEEEEEEe---cCCHH-HHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHH---------------------------
Confidence 779999999 68887 888899999999995 499999999877622111
Q ss_pred hhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCCcc
Q 003929 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (786)
Q Consensus 446 YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g~~ 525 (786)
+++++++ +|+
T Consensus 48 ----------------------------------~~~~~~~------------------------~~~------------ 57 (228)
T PF13641_consen 48 ----------------------------------LRALAAR------------------------YPR------------ 57 (228)
T ss_dssp ----------------------------------HHHHHHT------------------------TGG------------
T ss_pred ----------------------------------HHHHHHH------------------------cCC------------
Confidence 1122211 000
Q ss_pred cCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEE
Q 003929 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV 605 (786)
Q Consensus 526 d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafV 605 (786)
-.+.++.+.+++| ...|++|+|.+++. ..+++|+++|+|. ++.|++|++++.+|.+|+ +++|
T Consensus 58 -------~~v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~-~~~p~~l~~~~~~~~~~~----~~~v 119 (228)
T PF13641_consen 58 -------VRVRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDT-VLDPDWLERLLAAFADPG----VGAV 119 (228)
T ss_dssp --------GEEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSE-EE-CHHHHHHHHHHHBSS------EE
T ss_pred -------CceEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCc-EECHHHHHHHHHHHHhCC----CCeE
Confidence 0145666654332 23699999999997 4599999999999 589999999999997764 7899
Q ss_pred ecCccccCCCCCCCccchhhhhhh----hhccccccCCCceecccchhhhhhhh---cCCCC
Q 003929 606 QFPQRFDGIDRHDRYSNRNVVFFD----INMKGLDGIQGPIYVGTGCVFRRQAL---YGYDA 660 (786)
Q Consensus 606 QtPQ~F~nid~~D~~~n~~~vFf~----ii~~g~Dg~~g~~~~GTgcv~RR~AL---~G~~P 660 (786)
|++..+++ +. ..+..-+..+|. ....+...++..+++|++++|||++| .|++|
T Consensus 120 ~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd~ 179 (228)
T PF13641_consen 120 GGPVFPDN-DR-NWLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSALEEVGGFDP 179 (228)
T ss_dssp EEEEEETT-CC-CEEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHHHHH-S--S
T ss_pred eeeEeecC-CC-CHHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHHHHhCCCCC
Confidence 98886654 22 222222333321 22344455666778999999999999 56766
No 25
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.39 E-value=1.8e-12 Score=126.56 Aligned_cols=115 Identities=16% Similarity=0.067 Sum_probs=83.2
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhcc-------cCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEec
Q 003929 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAV-------ISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQF 607 (786)
Q Consensus 535 lvYvSREKrpg~~Hh~KAGALN~lLrvSa~-------~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQt 607 (786)
+.++.++... ....|++|||.+++.+.- -..+++|+++|+|. ++.|++|+.++.+|.+|+ ++.||.
T Consensus 52 v~~i~~~~~~--~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~-~~~~~~l~~~~~~~~~~~----v~~v~~ 124 (191)
T cd06436 52 VHLLRRHLPN--ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADG-RLDPNALEAVAPYFSDPR----VAGTQS 124 (191)
T ss_pred EEEEeccCCc--CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCC-CcCHhHHHHHHHhhcCCc----eEEEee
Confidence 5566553211 123699999999987420 01247999999999 699999999998888775 789999
Q ss_pred CccccCCCCCCC---ccchhhhhhhhhccccccCCCceecccchhhhhhhhc
Q 003929 608 PQRFDGIDRHDR---YSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALY 656 (786)
Q Consensus 608 PQ~F~nid~~D~---~~n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL~ 656 (786)
+.+++|.+.+-. ...+...++.+++.++..++...+.|+|++|||++|.
T Consensus 125 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l~ 176 (191)
T cd06436 125 RVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSALD 176 (191)
T ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHHH
Confidence 999988654311 1112233345678888777777789999999999994
No 26
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.34 E-value=1.1e-11 Score=140.85 Aligned_cols=171 Identities=19% Similarity=0.199 Sum_probs=116.3
Q ss_pred CCCceeEEeccCCCCCCCHHHHHHHHHHHH-cCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCC
Q 003929 364 DLADIDIFVSTVDPMKEPPLITANTVLSIL-AVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRA 442 (786)
Q Consensus 364 ~LP~VDVFV~TaDP~kEPp~v~~nTVLS~l-AlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRa 442 (786)
..|.|.|+||. |||. .++.+||.+++ ++||| ++.|+|.||+..+-|...+.+
T Consensus 64 ~~p~vaIlIPA---~NE~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~--------------------- 116 (504)
T PRK14716 64 PEKRIAIFVPA---WREA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDR--------------------- 116 (504)
T ss_pred CCCceEEEEec---cCch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHH---------------------
Confidence 48999999999 7996 57999999865 79996 689999999888744443322
Q ss_pred chhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCC
Q 003929 443 PEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQN 522 (786)
Q Consensus 443 Pe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~ 522 (786)
+++ .||+
T Consensus 117 ----------------------------------------l~~------------------------~~p~--------- 123 (504)
T PRK14716 117 ----------------------------------------LAA------------------------RYPR--------- 123 (504)
T ss_pred ----------------------------------------HHH------------------------HCCC---------
Confidence 110 1222
Q ss_pred CcccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcc--cCCC---CEEEEecCCCCCCcHHHHHHhhcccccCC
Q 003929 523 GVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAV--ISNA---PYLLNVDCDHYINNSKALREAMCFMMDPT 597 (786)
Q Consensus 523 g~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~--~Tng---pfILnLDaD~yinnp~~Lr~amcfflDp~ 597 (786)
+..+. .+++| .+.||+|||.+++.... ...| ++|+++|||. +++|++|+...-++-|
T Consensus 124 ------------v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~-~v~Pd~Lr~~~~~~~~-- 185 (504)
T PRK14716 124 ------------VHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAED-VIHPLELRLYNYLLPR-- 185 (504)
T ss_pred ------------eEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCC-CcCccHHHHHHhhcCC--
Confidence 21111 12222 25899999999975311 1133 9999999999 6999999976554434
Q ss_pred CCcceEEEecCccccCCCCCCCccch----hhhhhhhhccccccCCCce-ecccchhhhhhhhc
Q 003929 598 SGKKICYVQFPQRFDGIDRHDRYSNR----NVVFFDINMKGLDGIQGPI-YVGTGCVFRRQALY 656 (786)
Q Consensus 598 ~g~~vafVQtPQ~F~nid~~D~~~n~----~~vFf~ii~~g~Dg~~g~~-~~GTgcv~RR~AL~ 656 (786)
..+||.|....+.+.+...+.. ....+...+..++.+++++ ++|+|++|||++|.
T Consensus 186 ----~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe 245 (504)
T PRK14716 186 ----HDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALE 245 (504)
T ss_pred ----CCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHH
Confidence 3499999877654433222211 1222334566778888875 89999999999995
No 27
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.27 E-value=8.9e-11 Score=127.35 Aligned_cols=171 Identities=18% Similarity=0.226 Sum_probs=112.7
Q ss_pred CCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCc
Q 003929 364 DLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAP 443 (786)
Q Consensus 364 ~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaP 443 (786)
..|.|.|+||+ |||... +.+|+.|+++.|||. +.|+|.||+.+.-|.+-+ +
T Consensus 39 ~~p~VSViiP~---~nee~~-l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv-~---------------------- 89 (373)
T TIGR03472 39 AWPPVSVLKPL---HGDEPE-LYENLASFCRQDYPG--FQMLFGVQDPDDPALAVV-R---------------------- 89 (373)
T ss_pred CCCCeEEEEEC---CCCChh-HHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHH-H----------------------
Confidence 48999999999 799875 679999999999996 789999998776332211 1
Q ss_pred hhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCC
Q 003929 444 EWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNG 523 (786)
Q Consensus 444 e~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g 523 (786)
.+.++ ||.
T Consensus 90 --------------------------------------~~~~~------------------------~p~---------- 97 (373)
T TIGR03472 90 --------------------------------------RLRAD------------------------FPD---------- 97 (373)
T ss_pred --------------------------------------HHHHh------------------------CCC----------
Confidence 11100 111
Q ss_pred cccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceE
Q 003929 524 VRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKIC 603 (786)
Q Consensus 524 ~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~va 603 (786)
.++.++.+.++.| .+.|++|+|++++. +.+++|+++|+|. ++.|++|++.+..|.||+ ++
T Consensus 98 ---------~~i~~v~~~~~~G--~~~K~~~l~~~~~~----a~ge~i~~~DaD~-~~~p~~L~~lv~~~~~~~----v~ 157 (373)
T TIGR03472 98 ---------ADIDLVIDARRHG--PNRKVSNLINMLPH----ARHDILVIADSDI-SVGPDYLRQVVAPLADPD----VG 157 (373)
T ss_pred ---------CceEEEECCCCCC--CChHHHHHHHHHHh----ccCCEEEEECCCC-CcChhHHHHHHHHhcCCC----cc
Confidence 1244554433333 45799999998876 5799999999999 689999999999998875 67
Q ss_pred EEecCccccCCCCCCCccch------hhhhhhhhccccccCC-Cceecccchhhhhhhh---cCCC
Q 003929 604 YVQFPQRFDGIDRHDRYSNR------NVVFFDINMKGLDGIQ-GPIYVGTGCVFRRQAL---YGYD 659 (786)
Q Consensus 604 fVQtPQ~F~nid~~D~~~n~------~~vFf~ii~~g~Dg~~-g~~~~GTgcv~RR~AL---~G~~ 659 (786)
+|+.+.+.. +... +... +..|+...... ..++ ..++.|++.++||++| .|++
T Consensus 158 ~V~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~G~~~a~RR~~l~~iGGf~ 219 (373)
T TIGR03472 158 LVTCLYRGR--PVPG-FWSRLGAMGINHNFLPSVMVA-RALGRARFCFGATMALRRATLEAIGGLA 219 (373)
T ss_pred eEeccccCC--CCCC-HHHHHHHHHhhhhhhHHHHHH-HhccCCccccChhhheeHHHHHHcCChH
Confidence 999864322 2111 2111 11122111111 1122 2357899999999999 5554
No 28
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.25 E-value=4.4e-11 Score=115.25 Aligned_cols=105 Identities=19% Similarity=0.138 Sum_probs=73.9
Q ss_pred CcchhhhHHHHHhhc-ccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCccc----h
Q 003929 549 HKKAGAMNALIRVSA-VISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSN----R 623 (786)
Q Consensus 549 h~KAGALN~lLrvSa-~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n----~ 623 (786)
..|++|||.+++... .-.++++|+++|+|. ++.|++|++++-.|.+. ...||......+.+.+ .+.. .
T Consensus 62 ~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~-~~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~~~-~~~~~~~~~ 134 (183)
T cd06438 62 RGKGYALDFGFRHLLNLADDPDAVVVFDADN-LVDPNALEELNARFAAG-----ARVVQAYYNSKNPDDS-WITRLYAFA 134 (183)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCEEEEEcCCC-CCChhHHHHHHHHHhhC-----CCeeEEEEeeeCCccC-HHHHHHHHH
Confidence 469999999998741 125689999999999 58899999999988642 2378887766654332 1111 2
Q ss_pred hhhhhhhhccccccCCCc-eecccchhhhhhhh--cCCCC
Q 003929 624 NVVFFDINMKGLDGIQGP-IYVGTGCVFRRQAL--YGYDA 660 (786)
Q Consensus 624 ~~vFf~ii~~g~Dg~~g~-~~~GTgcv~RR~AL--~G~~P 660 (786)
..+++.+...++..+++. .+.|+|.+|||++| .|+++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~g~~~ 174 (183)
T cd06438 135 FLVFNRLRPLGRSNLGLSCQLGGTGMCFPWAVLRQAPWAA 174 (183)
T ss_pred HHHHHHHHHHHHHHcCCCeeecCchhhhHHHHHHhCCCCC
Confidence 223344455566667654 57999999999999 45543
No 29
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.18 E-value=1.7e-10 Score=136.14 Aligned_cols=97 Identities=16% Similarity=0.235 Sum_probs=66.8
Q ss_pred CcchhhhHHHHHhhccc---CCC--CEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCcc--
Q 003929 549 HKKAGAMNALIRVSAVI---SNA--PYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYS-- 621 (786)
Q Consensus 549 h~KAGALN~lLrvSa~~---Tng--pfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~-- 621 (786)
+.||+|||.++...-.. +.+ ++++++|||- +++|++|+ .+-+|.++. .+||.|..-.+...+...+
T Consensus 132 ~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~-~v~pd~L~-~~~~l~~~~-----~~VQ~p~~p~~~~~~~~~~~~ 204 (727)
T PRK11234 132 TSKADCLNNVLDAITQFERSANFAFAGFILHDAED-VISPMELR-LFNYLVERK-----DLIQIPVYPFEREWTHFTSGT 204 (727)
T ss_pred CCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCC-CCChhHHH-HHHhhcCCC-----CeEeecccCCCccHHHHHHHH
Confidence 47999999999874111 133 4688899999 79999998 678888753 5999996622222111122
Q ss_pred --chhhhhhhhhccccccCCCc-eecccchhh-hh
Q 003929 622 --NRNVVFFDINMKGLDGIQGP-IYVGTGCVF-RR 652 (786)
Q Consensus 622 --n~~~vFf~ii~~g~Dg~~g~-~~~GTgcv~-RR 652 (786)
.+....+...+++++.++|+ .+.|||+.| ||
T Consensus 205 ~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr 239 (727)
T PRK11234 205 YIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRR 239 (727)
T ss_pred HHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecc
Confidence 23333445667889999765 588999999 66
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.15 E-value=2e-10 Score=111.65 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=67.6
Q ss_pred CcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCccchhh-hh
Q 003929 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNV-VF 627 (786)
Q Consensus 549 h~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n~~~-vF 627 (786)
..|+.++|.++.. +.++||+++|+|. ++.|++|.+.+.+|.++. .++|+.++.+...+.......... .+
T Consensus 68 ~g~~~a~n~g~~~----~~~d~i~~~D~D~-~~~~~~l~~l~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~ 138 (229)
T cd04192 68 SGKKNALTTAIKA----AKGDWIVTTDADC-VVPSNWLLTFVAFIQKEQ----IGLVAGPVIYFKGKSLLAKFQRLDWLS 138 (229)
T ss_pred chhHHHHHHHHHH----hcCCEEEEECCCc-ccCHHHHHHHHHHhhcCC----CcEEeeeeeecCCccHHHHHHHHHHHH
Confidence 4789999999986 4699999999999 689999999999887543 568888888762111000001111 11
Q ss_pred hhhhccccccCCC-ceecccchhhhhhhh---cCCCC
Q 003929 628 FDINMKGLDGIQG-PIYVGTGCVFRRQAL---YGYDA 660 (786)
Q Consensus 628 f~ii~~g~Dg~~g-~~~~GTgcv~RR~AL---~G~~P 660 (786)
......+.-+++. .++.|++.++||+++ .||++
T Consensus 139 ~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~ 175 (229)
T cd04192 139 LLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEG 175 (229)
T ss_pred HHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCcc
Confidence 1112222223333 356788899999998 56643
No 31
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.12 E-value=4.8e-10 Score=110.50 Aligned_cols=98 Identities=19% Similarity=0.171 Sum_probs=68.4
Q ss_pred CcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCccchhhhhh
Q 003929 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFF 628 (786)
Q Consensus 549 h~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vFf 628 (786)
..|++|+|.+++. +.++||+++|+|. ++.|++|++++-.|.+|+ ++.|+..+.+++.+.. .+......++
T Consensus 63 ~g~~~a~n~g~~~----a~~d~v~~lD~D~-~~~~~~l~~l~~~~~~~~----v~~v~~~~~~~~~~~~-~~~~~~~~~~ 132 (235)
T cd06434 63 PGKRRALAEGIRH----VTTDIVVLLDSDT-VWPPNALPEMLKPFEDPK----VGGVGTNQRILRPRDS-KWSFLAAEYL 132 (235)
T ss_pred CChHHHHHHHHHH----hCCCEEEEECCCc-eeChhHHHHHHHhccCCC----EeEEcCceEeecCccc-HHHHHHHHHH
Confidence 4599999999987 4799999999999 699999999999998664 8899999988776421 1111111122
Q ss_pred hh----hccccccCCCc-eecccchhhhhhhhc
Q 003929 629 DI----NMKGLDGIQGP-IYVGTGCVFRRQALY 656 (786)
Q Consensus 629 ~i----i~~g~Dg~~g~-~~~GTgcv~RR~AL~ 656 (786)
.. ........++. ...|...++||++|.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~ 165 (235)
T cd06434 133 ERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILK 165 (235)
T ss_pred HHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHh
Confidence 11 11222333333 356778899999993
No 32
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.09 E-value=7e-10 Score=108.30 Aligned_cols=65 Identities=22% Similarity=0.230 Sum_probs=56.3
Q ss_pred CcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCccchhhhhh
Q 003929 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFF 628 (786)
Q Consensus 549 h~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vFf 628 (786)
..|++|||.+++. ..++||+++|+|. +..|++|.+++-.|.+|. +++|+..
T Consensus 72 ~~~~~~~n~g~~~----a~~d~i~~~D~D~-~~~~~~l~~l~~~~~~~~----~~~v~~~-------------------- 122 (196)
T cd02520 72 NPKVNNLIKGYEE----ARYDILVISDSDI-SVPPDYLRRMVAPLMDPG----VGLVTCL-------------------- 122 (196)
T ss_pred CHhHHHHHHHHHh----CCCCEEEEECCCc-eEChhHHHHHHHHhhCCC----CCeEEee--------------------
Confidence 3689999999986 5699999999999 689999999999987765 5678764
Q ss_pred hhhccccccCCCceecccchhhhhhhh
Q 003929 629 DINMKGLDGIQGPIYVGTGCVFRRQAL 655 (786)
Q Consensus 629 ~ii~~g~Dg~~g~~~~GTgcv~RR~AL 655 (786)
+..|+++++||+++
T Consensus 123 -------------~~~g~~~~~r~~~~ 136 (196)
T cd02520 123 -------------CAFGKSMALRREVL 136 (196)
T ss_pred -------------cccCceeeeEHHHH
Confidence 67789999999999
No 33
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.09 E-value=1.5e-09 Score=108.61 Aligned_cols=169 Identities=18% Similarity=0.222 Sum_probs=111.8
Q ss_pred CCCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCC
Q 003929 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (786)
Q Consensus 362 ~~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepR 441 (786)
....|.|-|+|+| |+|. ..+..++.|+++.+||.+++.++|.|||.++-|.+.+.
T Consensus 25 ~~~~~~isVvip~---~n~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~--------------------- 79 (251)
T cd06439 25 PAYLPTVTIIIPA---YNEE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAR--------------------- 79 (251)
T ss_pred CCCCCEEEEEEec---CCcH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHH---------------------
Confidence 3568999999999 6876 66789999999999999889999999998873322110
Q ss_pred CchhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccC
Q 003929 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (786)
Q Consensus 442 aPe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~ 521 (786)
.+.+
T Consensus 80 ----------------------------------------~~~~------------------------------------ 83 (251)
T cd06439 80 ----------------------------------------EYAD------------------------------------ 83 (251)
T ss_pred ----------------------------------------HHhh------------------------------------
Confidence 0100
Q ss_pred CCcccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcc
Q 003929 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKK 601 (786)
Q Consensus 522 ~g~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~ 601 (786)
. ++.++..+++ ..|++|+|.+++. .++++|+++|+|. ++.|++|.+.+-.|.++.
T Consensus 84 ---------~--~v~~i~~~~~-----~g~~~a~n~gi~~----a~~d~i~~lD~D~-~~~~~~l~~l~~~~~~~~---- 138 (251)
T cd06439 84 ---------K--GVKLLRFPER-----RGKAAALNRALAL----ATGEIVVFTDANA-LLDPDALRLLVRHFADPS---- 138 (251)
T ss_pred ---------C--cEEEEEcCCC-----CChHHHHHHHHHH----cCCCEEEEEcccc-CcCHHHHHHHHHHhcCCC----
Confidence 0 1334444432 3599999999987 4689999999999 577999999999997653
Q ss_pred eEEEecCccccCCCCCCCccchhhhhh---hhhccccccCC-CceecccchhhhhhhhcCCC
Q 003929 602 ICYVQFPQRFDGIDRHDRYSNRNVVFF---DINMKGLDGIQ-GPIYVGTGCVFRRQALYGYD 659 (786)
Q Consensus 602 vafVQtPQ~F~nid~~D~~~n~~~vFf---~ii~~g~Dg~~-g~~~~GTgcv~RR~AL~G~~ 659 (786)
+++|+....+.+.+. .......|+ ..........+ .....|++.++||+++.|+.
T Consensus 139 ~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~~ 197 (251)
T cd06439 139 VGAVSGELVIVDGGG---SGSGEGLYWKYENWLKRAESRLGSTVGANGAIYAIRRELFRPLP 197 (251)
T ss_pred ccEEEeEEEecCCcc---cchhHHHHHHHHHHHHHHHHhcCCeeeecchHHHhHHHHhcCCC
Confidence 778888766654432 111111111 11111111112 22345555568999998663
No 34
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.02 E-value=1.3e-10 Score=93.87 Aligned_cols=48 Identities=35% Similarity=1.025 Sum_probs=30.3
Q ss_pred ccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccc
Q 003929 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 39 CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
|.+|.+++ +++|..|.+| +|+|.|||.||...++++++.||.||++|+
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 67899997 8899999999 999999999999998889999999999996
No 35
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.02 E-value=5.4e-10 Score=113.83 Aligned_cols=87 Identities=18% Similarity=0.085 Sum_probs=58.3
Q ss_pred CCCCEEEEecCCCCCCcHHHHHHhhcccc-cCCCCcceEEEecCccccCCCCCCCccchhhhhh----hhhccccccCCC
Q 003929 566 SNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFF----DINMKGLDGIQG 640 (786)
Q Consensus 566 TngpfILnLDaD~yinnp~~Lr~amcffl-Dp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vFf----~ii~~g~Dg~~g 640 (786)
++++||+++|+|. +..|++|++++-.|. ||+ ++.||..+...|...+ .+..-+.+-| -........++.
T Consensus 72 a~~e~i~~~DaD~-~~~~~~l~~l~~~~~~~p~----vg~v~g~~~~~~~~~~-~~~~~q~~ey~~~~~~~~~~~s~~g~ 145 (244)
T cd04190 72 DDPEFILLVDADT-KFDPDSIVQLYKAMDKDPE----IGGVCGEIHPMGKKQG-PLVMYQVFEYAISHWLDKAFESVFGF 145 (244)
T ss_pred CCCCEEEEECCCC-cCCHhHHHHHHHHHHhCCC----EEEEEeeeEEcCCcch-hHHHhHheehhhhhhhcccHHHcCCc
Confidence 6799999999999 699999999999884 764 7899998877665322 1111111111 111122333343
Q ss_pred -ceecccchhhhhhhhcCC
Q 003929 641 -PIYVGTGCVFRRQALYGY 658 (786)
Q Consensus 641 -~~~~GTgcv~RR~AL~G~ 658 (786)
.+..|++.+|||++|...
T Consensus 146 ~~~~~G~~~~~R~~~l~~~ 164 (244)
T cd04190 146 VTCLPGCFSMYRIEALKGD 164 (244)
T ss_pred eEECCCceEEEEehhhcCC
Confidence 456799999999999653
No 36
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=98.91 E-value=1.6e-08 Score=110.36 Aligned_cols=133 Identities=22% Similarity=0.205 Sum_probs=91.6
Q ss_pred CCCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCC
Q 003929 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (786)
Q Consensus 362 ~~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepR 441 (786)
+...|.|.|+|++ |||. ..+..++-|+++.|||. .+.|+|.|||.++=|.+-+.+
T Consensus 36 ~~~~p~VSVIIpa---~Ne~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~-------------------- 90 (384)
T TIGR03469 36 PEAWPAVVAVVPA---RNEA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA-------------------- 90 (384)
T ss_pred CCCCCCEEEEEec---CCcH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH--------------------
Confidence 3568999999999 7887 56789999999999995 489999999998733222111
Q ss_pred CchhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccC
Q 003929 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (786)
Q Consensus 442 aPe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~ 521 (786)
+.++ .|.
T Consensus 91 -----------------------------------------~~~~---~~~----------------------------- 97 (384)
T TIGR03469 91 -----------------------------------------AARA---YGR----------------------------- 97 (384)
T ss_pred -----------------------------------------HHHh---cCC-----------------------------
Confidence 1100 000
Q ss_pred CCcccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCC-CCEEEEecCCCCCCcHHHHHHhhcccccCCCCc
Q 003929 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISN-APYLLNVDCDHYINNSKALREAMCFMMDPTSGK 600 (786)
Q Consensus 522 ~g~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~Tn-gpfILnLDaD~yinnp~~Lr~amcfflDp~~g~ 600 (786)
-+++.++..+.+|. .-..|+.|+|.+++.+....+ +++|+.+|+|. .+.|++|++++-.+.++.
T Consensus 98 ----------~~~i~vi~~~~~~~-g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~-~~~p~~l~~lv~~~~~~~--- 162 (384)
T TIGR03469 98 ----------GDRLTVVSGQPLPP-GWSGKLWAVSQGIAAARTLAPPADYLLLTDADI-AHGPDNLARLVARARAEG--- 162 (384)
T ss_pred ----------CCcEEEecCCCCCC-CCcchHHHHHHHHHHHhccCCCCCEEEEECCCC-CCChhHHHHHHHHHHhCC---
Confidence 01234443332221 235789999999997532222 89999999999 699999999999998654
Q ss_pred ceEEEecC
Q 003929 601 KICYVQFP 608 (786)
Q Consensus 601 ~vafVQtP 608 (786)
+++|...
T Consensus 163 -~~~vs~~ 169 (384)
T TIGR03469 163 -LDLVSLM 169 (384)
T ss_pred -CCEEEec
Confidence 3455543
No 37
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=98.89 E-value=2e-08 Score=118.34 Aligned_cols=98 Identities=18% Similarity=0.344 Sum_probs=71.2
Q ss_pred CcchhhhHHHHHhh---cccCCCCE--EEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCCCCC------
Q 003929 549 HKKAGAMNALIRVS---AVISNAPY--LLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRH------ 617 (786)
Q Consensus 549 h~KAGALN~lLrvS---a~~Tngpf--ILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~------ 617 (786)
..||.|||.++... ...+.+.| |+++|||- +++|++|+. |-|+++.. -+||.|= .+...+
T Consensus 140 ~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd-~~~P~~L~~-~~~~~~~~-----~~iQ~pV--~~~~~~~~~~l~ 210 (703)
T PRK15489 140 TCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSED-VLHPLELKY-FNYLLPRK-----DLVQLPV--LSLERKWYEWVA 210 (703)
T ss_pred CCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCC-CCChhHHHH-HHhhcCCc-----ceeeeee--ccCCCccccHHH
Confidence 46999999999763 11234555 99999999 799999975 46666432 2799871 212111
Q ss_pred CCccchhhhhhhhhccccccCCCce-ecccchhhhhhhh
Q 003929 618 DRYSNRNVVFFDINMKGLDGIQGPI-YVGTGCVFRRQAL 655 (786)
Q Consensus 618 D~~~n~~~vFf~ii~~g~Dg~~g~~-~~GTgcv~RR~AL 655 (786)
-.|..+....|+..++++..+++++ ..|||+.|||+||
T Consensus 211 ~~~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL 249 (703)
T PRK15489 211 GTYMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRAL 249 (703)
T ss_pred HHHHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHH
Confidence 1345566677888899999999887 5889999999997
No 38
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.87 E-value=3.5e-08 Score=89.13 Aligned_cols=106 Identities=24% Similarity=0.329 Sum_probs=64.6
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhccc-ccCCCCcceEEEecCccccC
Q 003929 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKICYVQFPQRFDG 613 (786)
Q Consensus 535 lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcff-lDp~~g~~vafVQtPQ~F~n 613 (786)
++|+..++. ..|+.|+|.+++.+ ++++|+++|+|. ...+++|.+.+..+ .++. +++|...+...+
T Consensus 55 ~~~~~~~~~-----~g~~~~~n~~~~~~----~~~~i~~~D~D~-~~~~~~l~~~~~~~~~~~~----~~~v~~~~~~~~ 120 (180)
T cd06423 55 VLVVRDKEN-----GGKAGALNAGLRHA----KGDIVVVLDADT-ILEPDALKRLVVPFFADPK----VGAVQGRVRVRN 120 (180)
T ss_pred EEEEEeccc-----CCchHHHHHHHHhc----CCCEEEEECCCC-CcChHHHHHHHHHhccCCC----eeeEeeeEEEec
Confidence 445555543 35999999999874 799999999999 57899999994444 4543 556655444433
Q ss_pred CCCCCCccchh-hhh---hhhhccccccCC-Cceecccchhhhhhhh
Q 003929 614 IDRHDRYSNRN-VVF---FDINMKGLDGIQ-GPIYVGTGCVFRRQAL 655 (786)
Q Consensus 614 id~~D~~~n~~-~vF---f~ii~~g~Dg~~-g~~~~GTgcv~RR~AL 655 (786)
...+ .+.... ..| +.....+..... -..+.|++.++||++|
T Consensus 121 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 166 (180)
T cd06423 121 GSEN-LLTRLQAIEYLSIFRLGRRAQSALGGVLVLSGAFGAFRREAL 166 (180)
T ss_pred CcCc-ceeccchheecceeeeeeehhheecceeecCchHHHHHHHHH
Confidence 3211 111111 111 111112211122 2568999999999999
No 39
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.84 E-value=3.8e-08 Score=94.72 Aligned_cols=165 Identities=20% Similarity=0.244 Sum_probs=105.7
Q ss_pred CceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCchh
Q 003929 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (786)
Q Consensus 366 P~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaPe~ 445 (786)
|.|.|+|+| |+|.+..+.+|+.|+++..||. +.|+|.|||.+.-+...+.+
T Consensus 1 p~vsiii~~---~n~~~~~l~~~l~sl~~q~~~~--~eiivvd~gs~d~~~~~~~~------------------------ 51 (202)
T cd04184 1 PLISIVMPV---YNTPEKYLREAIESVRAQTYPN--WELCIADDASTDPEVKRVLK------------------------ 51 (202)
T ss_pred CeEEEEEec---ccCcHHHHHHHHHHHHhCcCCC--eEEEEEeCCCCChHHHHHHH------------------------
Confidence 679999999 7998788899999999999985 67999999987522111111
Q ss_pred hhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCCcc
Q 003929 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (786)
Q Consensus 446 YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g~~ 525 (786)
.+..+
T Consensus 52 ------------------------------------~~~~~--------------------------------------- 56 (202)
T cd04184 52 ------------------------------------KYAAQ--------------------------------------- 56 (202)
T ss_pred ------------------------------------HHHhc---------------------------------------
Confidence 01000
Q ss_pred cCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhccc-ccCCCCcceEE
Q 003929 526 DIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKICY 604 (786)
Q Consensus 526 d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcff-lDp~~g~~vaf 604 (786)
.+.+.++..+.+ ..+|.|+|.+++. +.++||+.+|+|. ++.|++|.+++-.| .+|+ +++
T Consensus 57 ------~~~~~~~~~~~~-----~g~~~a~n~g~~~----a~~d~i~~ld~D~-~~~~~~l~~~~~~~~~~~~----~~~ 116 (202)
T cd04184 57 ------DPRIKVVFREEN-----GGISAATNSALEL----ATGEFVALLDHDD-ELAPHALYEVVKALNEHPD----ADL 116 (202)
T ss_pred ------CCCEEEEEcccC-----CCHHHHHHHHHHh----hcCCEEEEECCCC-cCChHHHHHHHHHHHhCCC----CCE
Confidence 012344444432 3579999999987 4689999999999 69999999999988 5665 557
Q ss_pred EecCccccCCCCCCCccchhhhhhhhhccccccCCCceecccchhhhhhhh---cCCCC
Q 003929 605 VQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL---YGYDA 660 (786)
Q Consensus 605 VQtPQ~F~nid~~D~~~n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL---~G~~P 660 (786)
|+....+...+.. ... ..+.... ..+.+....+.|.+.++||+++ .||++
T Consensus 117 v~~~~~~~~~~~~-~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~iggf~~ 169 (202)
T cd04184 117 IYSDEDKIDEGGK-RSE----PFFKPDW-SPDLLLSQNYIGHLLVYRRSLVRQVGGFRE 169 (202)
T ss_pred EEccHHhccCCCC-Eec----cccCCCC-CHHHhhhcCCccceEeEEHHHHHHhCCCCc
Confidence 7766554331111 000 0000000 0111122245577778999999 46644
No 40
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.82 E-value=3e-08 Score=95.57 Aligned_cols=99 Identities=15% Similarity=0.120 Sum_probs=63.1
Q ss_pred CcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc-cCCCCcceEEEecCccccCCCCCCCccchhhhh
Q 003929 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVF 627 (786)
Q Consensus 549 h~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl-Dp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vF 627 (786)
+.+++|+|.+++. ++++||+++|+|- +..|+.|.+.+-+++ ++ +.++|.....+.+.+.. .........
T Consensus 65 ~G~~~~~n~g~~~----~~g~~v~~ld~Dd-~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~ 134 (214)
T cd04196 65 LGVARNFESLLQA----ADGDYVFFCDQDD-IWLPDKLERLLKAFLKDD----KPLLVYSDLELVDENGN-PIGESFFEY 134 (214)
T ss_pred ccHHHHHHHHHHh----CCCCEEEEECCCc-ccChhHHHHHHHHHhcCC----CceEEecCcEEECCCCC-Ccccccccc
Confidence 3589999999876 5799999999999 589999999999854 43 46678887655433221 111000000
Q ss_pred hhh--hccccccCCCceecccchhhhhhhhcC
Q 003929 628 FDI--NMKGLDGIQGPIYVGTGCVFRRQALYG 657 (786)
Q Consensus 628 f~i--i~~g~Dg~~g~~~~GTgcv~RR~AL~G 657 (786)
... ....+.-.....+.|+++++||+++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 166 (214)
T cd04196 135 QKIKPGTSFNNLLFQNVVTGCTMAFNRELLEL 166 (214)
T ss_pred cccCCccCHHHHHHhCccCCceeeEEHHHHHh
Confidence 000 011112223346689999999999943
No 41
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.81 E-value=6.2e-09 Score=94.49 Aligned_cols=110 Identities=17% Similarity=0.152 Sum_probs=76.6
Q ss_pred cEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccC
Q 003929 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDG 613 (786)
Q Consensus 534 ~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~n 613 (786)
++.|+.++++ . .+++|+|.+++. ..++||+.+|+|. +..+++|.+.+-++.+.. ..+.+...+....+
T Consensus 54 ~i~~i~~~~n----~-g~~~~~n~~~~~----a~~~~i~~ld~D~-~~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~ 121 (169)
T PF00535_consen 54 NIRYIRNPEN----L-GFSAARNRGIKH----AKGEYILFLDDDD-IISPDWLEELVEALEKNP--PDVVIGSVIYIDDD 121 (169)
T ss_dssp TEEEEEHCCC----S-HHHHHHHHHHHH------SSEEEEEETTE-EE-TTHHHHHHHHHHHCT--TEEEEEEEEEEECT
T ss_pred cccccccccc----c-cccccccccccc----cceeEEEEeCCCc-eEcHHHHHHHHHHHHhCC--CcEEEEEEEEecCC
Confidence 4788888863 2 699999999987 5688999999999 588889999999999742 23444444444333
Q ss_pred CCCCCCcc--chhhhhhhhhccccccCCCceecccchhhhhhhh
Q 003929 614 IDRHDRYS--NRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL 655 (786)
Q Consensus 614 id~~D~~~--n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL 655 (786)
........ .....++.............+++|+++++||++|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~ 165 (169)
T PF00535_consen 122 NRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVF 165 (169)
T ss_dssp TETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHH
T ss_pred ccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHH
Confidence 32222111 1223455556666677788999999999999998
No 42
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=98.80 E-value=7.2e-08 Score=92.94 Aligned_cols=102 Identities=16% Similarity=0.135 Sum_probs=67.1
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCC
Q 003929 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGI 614 (786)
Q Consensus 535 lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~ni 614 (786)
+.|+.+++.. .+++|+|.+++. +.++||++||+|. +..|++|.+++.+|.. .+++++|.......+.
T Consensus 57 i~~i~~~~n~-----G~~~a~N~g~~~----a~gd~i~~lD~Dd-~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~ 123 (201)
T cd04195 57 LKVVPLEKNR-----GLGKALNEGLKH----CTYDWVARMDTDD-ISLPDRFEKQLDFIEK---NPEIDIVGGGVLEFDS 123 (201)
T ss_pred eEEEEcCccc-----cHHHHHHHHHHh----cCCCEEEEeCCcc-ccCcHHHHHHHHHHHh---CCCeEEEcccEEEECC
Confidence 5566665533 489999999987 5699999999999 5999999999999862 2247788887665544
Q ss_pred CCCCCccc----hhhhhhhhhccccccCCCceecccchhhhhhhh
Q 003929 615 DRHDRYSN----RNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL 655 (786)
Q Consensus 615 d~~D~~~n----~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL 655 (786)
+....... ...-++.... ....+.|.+.++||+++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~rr~~~ 162 (201)
T cd04195 124 DGNDIGKRRLPTSHDDILKFAR------RRSPFNHPTVMFRKSKV 162 (201)
T ss_pred CCCeeccccCCCCHHHHHHHhc------cCCCCCChHHhhhHHHH
Confidence 43211111 1111111111 12234567789999998
No 43
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=98.76 E-value=8e-08 Score=94.69 Aligned_cols=116 Identities=22% Similarity=0.254 Sum_probs=84.7
Q ss_pred eeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCchhhh
Q 003929 368 IDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYF 447 (786)
Q Consensus 368 VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaPe~YF 447 (786)
|.|+|+| |+|+. .+.+|+-++++.+||..++.++|.|||.+.=|..
T Consensus 2 ~sIiip~---~n~~~-~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~------------------------------ 47 (249)
T cd02525 2 VSIIIPV---RNEEK-YIEELLESLLNQSYPKDLIEIIVVDGGSTDGTRE------------------------------ 47 (249)
T ss_pred EEEEEEc---CCchh-hHHHHHHHHHhccCCCCccEEEEEeCCCCccHHH------------------------------
Confidence 7899999 78875 5699999999999997788999999998761110
Q ss_pred hhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCCcccC
Q 003929 448 AQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDI 527 (786)
Q Consensus 448 s~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g~~d~ 527 (786)
.++.+.+
T Consensus 48 -------------------------------~~~~~~~------------------------------------------ 54 (249)
T cd02525 48 -------------------------------IVQEYAA------------------------------------------ 54 (249)
T ss_pred -------------------------------HHHHHHh------------------------------------------
Confidence 0111110
Q ss_pred cCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEec
Q 003929 528 EGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQF 607 (786)
Q Consensus 528 ~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQt 607 (786)
..|.+.++..+. ..+++|+|.+++. .++++|+++|+|. ++.|++|.+.+-++.++. ...|+.
T Consensus 55 ---~~~~v~~i~~~~------~~~~~a~N~g~~~----a~~d~v~~lD~D~-~~~~~~l~~~~~~~~~~~----~~~v~~ 116 (249)
T cd02525 55 ---KDPRIRLIDNPK------RIQSAGLNIGIRN----SRGDIIIRVDAHA-VYPKDYILELVEALKRTG----ADNVGG 116 (249)
T ss_pred ---cCCeEEEEeCCC------CCchHHHHHHHHH----hCCCEEEEECCCc-cCCHHHHHHHHHHHhcCC----CCEEec
Confidence 013355554331 3578999999987 4799999999999 589999999998887654 345555
Q ss_pred C
Q 003929 608 P 608 (786)
Q Consensus 608 P 608 (786)
+
T Consensus 117 ~ 117 (249)
T cd02525 117 P 117 (249)
T ss_pred c
Confidence 4
No 44
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.62 E-value=2.9e-07 Score=86.98 Aligned_cols=92 Identities=15% Similarity=0.011 Sum_probs=60.8
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhccc-ccCCCCcceEEEecCccccCCCCCCCccchhhhhh
Q 003929 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFF 628 (786)
Q Consensus 550 ~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcff-lDp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vFf 628 (786)
.+++|+|.+++. ..++||+++|+|- ...++.+.+.+-.+ .+++ ..+|.....+.+.+........
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~-~~~~~~~~~~~~~~~~~~~----~~~v~g~~~~~~~~~~~~~~~~----- 127 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDD-TLLPGALLAVVAAFAEHPE----VDVVYGDVLLVDENGRVIGRRR----- 127 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCc-ccCchHHHHHHHHHHhCCC----ccEEEeeeEEEcCCCCcccCCC-----
Confidence 489999999987 5799999999999 58899999998444 4543 4577766555443332111110
Q ss_pred hhhccccccCCCceecccchhhhhhhh
Q 003929 629 DINMKGLDGIQGPIYVGTGCVFRRQAL 655 (786)
Q Consensus 629 ~ii~~g~Dg~~g~~~~GTgcv~RR~AL 655 (786)
......+......+.+|++.++||+++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (202)
T cd06433 128 PPPFLDKFLLYGMPICHQATFFRRSLF 154 (202)
T ss_pred CcchhhhHHhhcCcccCcceEEEHHHH
Confidence 111112222344567888899999999
No 45
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.54 E-value=4.8e-07 Score=88.45 Aligned_cols=99 Identities=11% Similarity=0.063 Sum_probs=59.9
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCccchhhhh--
Q 003929 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVF-- 627 (786)
Q Consensus 550 ~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vF-- 627 (786)
.+++|+|.+++. +.+++|+.+|+|. ...|++|...+..+.++. ..+|..+..... .....+.......
T Consensus 65 G~~~a~n~g~~~----a~gd~i~~lD~D~-~~~~~~l~~l~~~~~~~~----~~~v~g~~~~~~-~~~~~~~~~~~~~~~ 134 (224)
T cd06442 65 GLGSAYIEGFKA----ARGDVIVVMDADL-SHPPEYIPELLEAQLEGG----ADLVIGSRYVEG-GGVEGWGLKRKLISR 134 (224)
T ss_pred ChHHHHHHHHHH----cCCCEEEEEECCC-CCCHHHHHHHHHHHhcCC----CCEEEEeeeecC-CccCCCcHHHHHHHH
Confidence 489999999987 4589999999999 689999999999987654 335555432221 1111111111100
Q ss_pred -hhhhccccccCCCceecccchhhhhhhhcCC
Q 003929 628 -FDINMKGLDGIQGPIYVGTGCVFRRQALYGY 658 (786)
Q Consensus 628 -f~ii~~g~Dg~~g~~~~GTgcv~RR~AL~G~ 658 (786)
......-.-..+.....|+..++||++|..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i 166 (224)
T cd06442 135 GANLLARLLLGRKVSDPTSGFRAYRREVLEKL 166 (224)
T ss_pred HHHHHHHHHcCCCCCCCCCccchhhHHHHHHH
Confidence 0111111112234456676678999999433
No 46
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.54 E-value=1.1e-06 Score=89.08 Aligned_cols=109 Identities=12% Similarity=0.025 Sum_probs=63.9
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCC
Q 003929 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGI 614 (786)
Q Consensus 535 lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~ni 614 (786)
+.++.+.++. .|++|+|.+++. +.++||+.+|+|. ..+|++|.+++-.+.+.. ..+|... +|.+.
T Consensus 70 v~~~~~~~n~-----G~~~a~n~g~~~----a~g~~i~~lD~D~-~~~~~~l~~l~~~~~~~~----~~~v~g~-r~~~~ 134 (243)
T PLN02726 70 ILLRPRPGKL-----GLGTAYIHGLKH----ASGDFVVIMDADL-SHHPKYLPSFIKKQRETG----ADIVTGT-RYVKG 134 (243)
T ss_pred EEEEecCCCC-----CHHHHHHHHHHH----cCCCEEEEEcCCC-CCCHHHHHHHHHHHHhcC----CcEEEEc-cccCC
Confidence 4445544432 488999999986 5799999999999 599999999998886543 3456554 33321
Q ss_pred CCCCCcc---chhhhhhhhhccccccCCCceecccchhhhhhhhcCC
Q 003929 615 DRHDRYS---NRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGY 658 (786)
Q Consensus 615 d~~D~~~---n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL~G~ 658 (786)
.....+. .....++.....-.-+.+..-..|...++||+++.-+
T Consensus 135 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~d~~g~~~~~rr~~~~~i 181 (243)
T PLN02726 135 GGVHGWDLRRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKRSALEDL 181 (243)
T ss_pred CCcCCccHHHHHHHHHHHHHHHHHhCCCCCcCCCcccceeHHHHHHH
Confidence 1111110 1111112222222222233345566668999998533
No 47
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=98.49 E-value=1.5e-06 Score=82.25 Aligned_cols=78 Identities=19% Similarity=0.326 Sum_probs=56.0
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCccchhhhhhh
Q 003929 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFD 629 (786)
Q Consensus 550 ~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vFf~ 629 (786)
.+++++|.+++. +.++||++||+|- ++.|++|.+.+-++ ++. + +|..++...+.+...
T Consensus 66 ~~~~~~n~g~~~----a~g~~i~~lD~D~-~~~~~~l~~~~~~~-~~~----~-~v~g~~~~~~~~~~~----------- 123 (182)
T cd06420 66 RKAKIRNKAIAA----AKGDYLIFIDGDC-IPHPDFIADHIELA-EPG----V-FLSGSRVLLNEKLTE----------- 123 (182)
T ss_pred hHHHHHHHHHHH----hcCCEEEEEcCCc-ccCHHHHHHHHHHh-CCC----c-EEecceeecccccce-----------
Confidence 689999999986 5799999999999 68999999999887 332 3 445554443322111
Q ss_pred hhccccccCCCceecccchhhhhhhh---cCCCC
Q 003929 630 INMKGLDGIQGPIYVGTGCVFRRQAL---YGYDA 660 (786)
Q Consensus 630 ii~~g~Dg~~g~~~~GTgcv~RR~AL---~G~~P 660 (786)
..+.|++++++|+++ .|+++
T Consensus 124 -----------~~~~~~~~~~~r~~~~~~ggf~~ 146 (182)
T cd06420 124 -----------RGIRGCNMSFWKKDLLAVNGFDE 146 (182)
T ss_pred -----------eEeccceEEEEHHHHHHhCCCCc
Confidence 345677778888877 46654
No 48
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.48 E-value=8.4e-07 Score=84.06 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=65.6
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCC
Q 003929 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGI 614 (786)
Q Consensus 535 lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~ni 614 (786)
+.++-.+++.| |++|+|.+++. +.+++|++||+|- +..|++|.+.+-++.... ..+|+.+..+.+.
T Consensus 56 ~~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~-~~~~~~l~~l~~~~~~~~----~~~v~g~~~~~~~ 121 (185)
T cd04179 56 VRVIRLSRNFG-----KGAAVRAGFKA----ARGDIVVTMDADL-QHPPEDIPKLLEKLLEGG----ADVVIGSRFVRGG 121 (185)
T ss_pred eEEEEccCCCC-----ccHHHHHHHHH----hcCCEEEEEeCCC-CCCHHHHHHHHHHHhccC----CcEEEEEeecCCC
Confidence 34555555443 99999999987 5679999999999 589999999999866533 4577777655543
Q ss_pred CCCCC-ccch-hhhhhhhhccccccCCCceecccchhhhhhhhcC
Q 003929 615 DRHDR-YSNR-NVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYG 657 (786)
Q Consensus 615 d~~D~-~~n~-~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL~G 657 (786)
..... +... ...++. ....+.+.......|...++||++|.-
T Consensus 122 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~ 165 (185)
T cd04179 122 GAGMPLLRRLGSRLFNF-LIRLLLGVRISDTQSGFRLFRREVLEA 165 (185)
T ss_pred cccchHHHHHHHHHHHH-HHHHHcCCCCcCCCCceeeeHHHHHHH
Confidence 21011 1110 111111 111112223334455556899999943
No 49
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.44 E-value=1.4e-06 Score=80.12 Aligned_cols=65 Identities=20% Similarity=0.156 Sum_probs=53.5
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCccchhhhhhh
Q 003929 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFD 629 (786)
Q Consensus 550 ~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vFf~ 629 (786)
.+++|+|.+++.+ .+++|+.+|+|. .+.++++.+.+-.+.+. +++++|...
T Consensus 61 g~~~a~n~~~~~~----~~~~i~~~D~D~-~~~~~~l~~~~~~~~~~---~~~~~~~~~--------------------- 111 (166)
T cd04186 61 GFGAGNNQGIREA----KGDYVLLLNPDT-VVEPGALLELLDAAEQD---PDVGIVGPK--------------------- 111 (166)
T ss_pred ChHHHhhHHHhhC----CCCEEEEECCCc-EECccHHHHHHHHHHhC---CCceEEEcc---------------------
Confidence 5899999999874 799999999999 58999999998866532 246677664
Q ss_pred hhccccccCCCceecccchhhhhhhhc
Q 003929 630 INMKGLDGIQGPIYVGTGCVFRRQALY 656 (786)
Q Consensus 630 ii~~g~Dg~~g~~~~GTgcv~RR~AL~ 656 (786)
+.|++.++||+++.
T Consensus 112 -------------~~~~~~~~~~~~~~ 125 (166)
T cd04186 112 -------------VSGAFLLVRREVFE 125 (166)
T ss_pred -------------CceeeEeeeHHHHH
Confidence 88999999999993
No 50
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.37 E-value=3.9e-06 Score=81.91 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=34.1
Q ss_pred eeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCch
Q 003929 368 IDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 413 (786)
Q Consensus 368 VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~ 413 (786)
|.|+|++ |+|+. .+..|+.|+++..|+ .+.|+|.|||...
T Consensus 1 vsvii~~---~n~~~-~l~~~l~sl~~q~~~--~~evivvdd~s~d 40 (221)
T cd02522 1 LSIIIPT---LNEAE-NLPRLLASLRRLNPL--PLEIIVVDGGSTD 40 (221)
T ss_pred CEEEEEc---cCcHH-HHHHHHHHHHhccCC--CcEEEEEeCCCCc
Confidence 5789999 79876 679999999999984 5789999998765
No 51
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=98.33 E-value=4.7e-06 Score=87.17 Aligned_cols=109 Identities=18% Similarity=0.111 Sum_probs=82.0
Q ss_pred EEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCchhhhhh
Q 003929 370 IFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEWYFAQ 449 (786)
Q Consensus 370 VFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~ 449 (786)
|+|+| |+|++..+..||.|+++..||.....|+|.|||.+.-|.+.+.+
T Consensus 2 IIIp~---~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~---------------------------- 50 (299)
T cd02510 2 VIIIF---HNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE---------------------------- 50 (299)
T ss_pred EEEEE---ecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH----------------------------
Confidence 78999 79998999999999999999876678999999988733322211
Q ss_pred ccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCCcccCcC
Q 003929 450 KLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVRDIEG 529 (786)
Q Consensus 450 k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g~~d~~g 529 (786)
... .
T Consensus 51 --------------------------------~~~-~------------------------------------------- 54 (299)
T cd02510 51 --------------------------------EYY-K------------------------------------------- 54 (299)
T ss_pred --------------------------------HHH-h-------------------------------------------
Confidence 000 0
Q ss_pred CccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhccccc
Q 003929 530 NLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD 595 (786)
Q Consensus 530 ~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflD 595 (786)
...|.+.++..+++ ..++.|.|.+++. +.|+||+.||+|. ++.+++|.+.+-.+..
T Consensus 55 ~~~~~v~vi~~~~n-----~G~~~a~N~g~~~----A~gd~i~fLD~D~-~~~~~wL~~ll~~l~~ 110 (299)
T cd02510 55 KYLPKVKVLRLKKR-----EGLIRARIAGARA----ATGDVLVFLDSHC-EVNVGWLEPLLARIAE 110 (299)
T ss_pred hcCCcEEEEEcCCC-----CCHHHHHHHHHHH----ccCCEEEEEeCCc-ccCccHHHHHHHHHHh
Confidence 01133555555542 3588999999987 5799999999999 5799999999998863
No 52
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.28 E-value=6.1e-06 Score=80.05 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=37.8
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCC
Q 003929 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPT 597 (786)
Q Consensus 550 ~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~ 597 (786)
..+.++|.++...- ...+++|++||+|. ++.|++|++++-.+.+++
T Consensus 63 g~~~~~n~~~~~a~-~~~~d~v~~ld~D~-~~~~~~l~~l~~~~~~~~ 108 (202)
T cd04185 63 GGAGGFYEGVRRAY-ELGYDWIWLMDDDA-IPDPDALEKLLAYADKDN 108 (202)
T ss_pred chhhHHHHHHHHHh-ccCCCEEEEeCCCC-CcChHHHHHHHHHHhcCC
Confidence 46788888887542 45789999999999 689999999999887654
No 53
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.28 E-value=5e-06 Score=82.24 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=64.9
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhh---cccccCCCCcceEEEecCccc
Q 003929 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAM---CFMMDPTSGKKICYVQFPQRF 611 (786)
Q Consensus 535 lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~am---cfflDp~~g~~vafVQtPQ~F 611 (786)
+.++..+++. .+|+|+|.+++.+.- .+++||+.+|+|.+ ..|++|.+++ -.+. ...+++++ .|+..
T Consensus 49 i~~i~~~~n~-----G~~~a~N~g~~~a~~-~~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~~---~~~~~~~~-~~~~~ 117 (237)
T cd02526 49 IELIHLGENL-----GIAKALNIGIKAALE-NGADYVLLFDQDSV-PPPDMVEKLLAYKILSD---KNSNIGAV-GPRII 117 (237)
T ss_pred EEEEECCCce-----ehHHhhhHHHHHHHh-CCCCEEEEECCCCC-cCHhHHHHHHHHHHhhc---cCCCeEEE-eeeEE
Confidence 4556655533 399999999987431 15699999999995 7899999985 2222 12235544 55544
Q ss_pred cCCCCCCCccchhhhh-h-hhhccccccCCCceecccchhhhhhhh---cCCCC
Q 003929 612 DGIDRHDRYSNRNVVF-F-DINMKGLDGIQGPIYVGTGCVFRRQAL---YGYDA 660 (786)
Q Consensus 612 ~nid~~D~~~n~~~vF-f-~ii~~g~Dg~~g~~~~GTgcv~RR~AL---~G~~P 660 (786)
...............+ + ................|+|+++||+++ .|+++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~ 171 (237)
T cd02526 118 DRRTGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALEKVGGFDE 171 (237)
T ss_pred cCCCCeeccceeccCccceecccccCCceEeeeeeccceEEcHHHHHHhCCCCH
Confidence 3222111111111110 0 011111111223456789999999988 45544
No 54
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.21 E-value=6.5e-06 Score=78.71 Aligned_cols=101 Identities=12% Similarity=0.217 Sum_probs=61.5
Q ss_pred EEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCC
Q 003929 535 LVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGI 614 (786)
Q Consensus 535 lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~ni 614 (786)
+.|+..++. ..|++|+|.+++. +.+++|+.+|+|. ...+++|.+.+-. +++. .++.+..... .+
T Consensus 57 i~~i~~~~n-----~G~~~a~n~g~~~----a~~d~i~~~D~D~-~~~~~~l~~l~~~-~~~~--~~~v~g~~~~--~~- 120 (181)
T cd04187 57 VKVIRLSRN-----FGQQAALLAGLDH----ARGDAVITMDADL-QDPPELIPEMLAK-WEEG--YDVVYGVRKN--RK- 120 (181)
T ss_pred EEEEEecCC-----CCcHHHHHHHHHh----cCCCEEEEEeCCC-CCCHHHHHHHHHH-HhCC--CcEEEEEecC--Cc-
Confidence 455555442 3599999999987 4689999999999 5899999999987 4432 2344433221 11
Q ss_pred CCCCCcc-c-hhhhhhhhhccccccCCCceecccchhhhhhhh
Q 003929 615 DRHDRYS-N-RNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL 655 (786)
Q Consensus 615 d~~D~~~-n-~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL 655 (786)
+... . -...|+.. .....+..-+...|+..++||+++
T Consensus 121 ---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~~ 159 (181)
T cd04187 121 ---ESWLKRLTSKLFYRL-INKLSGVDIPDNGGDFRLMDRKVV 159 (181)
T ss_pred ---chHHHHHHHHHHHHH-HHHHcCCCCCCCCCCEEEEcHHHH
Confidence 1110 0 01122211 122233344556788889999999
No 55
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.00 E-value=2.2e-05 Score=77.21 Aligned_cols=53 Identities=17% Similarity=0.111 Sum_probs=41.9
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccc
Q 003929 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRF 611 (786)
Q Consensus 550 ~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F 611 (786)
.|++|+|.+++. +.+++|+.+|+|- ...|++|.+.+-.+.+.. ..+|.....+
T Consensus 69 G~~~a~~~g~~~----a~gd~i~~ld~D~-~~~~~~l~~l~~~~~~~~----~~~v~g~r~~ 121 (211)
T cd04188 69 GKGGAVRAGMLA----ARGDYILFADADL-ATPFEELEKLEEALKTSG----YDIAIGSRAH 121 (211)
T ss_pred CcHHHHHHHHHH----hcCCEEEEEeCCC-CCCHHHHHHHHHHHhccC----CcEEEEEeec
Confidence 489999999987 4689999999999 599999999999876532 3355555433
No 56
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=97.99 E-value=5.4e-05 Score=74.93 Aligned_cols=42 Identities=21% Similarity=0.186 Sum_probs=35.3
Q ss_pred CcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhccccc
Q 003929 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD 595 (786)
Q Consensus 549 h~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflD 595 (786)
...+.|+|.+++. ++|+||+.||+|- +..|+.|.+.+-.+.+
T Consensus 70 ~G~~~a~N~g~~~----a~gd~i~~lD~D~-~~~~~~l~~~~~~~~~ 111 (219)
T cd06913 70 KGVGYAKNQAIAQ----SSGRYLCFLDSDD-VMMPQRIRLQYEAALQ 111 (219)
T ss_pred ccHHHHHHHHHHh----cCCCEEEEECCCc-cCChhHHHHHHHHHHh
Confidence 3578899999986 6799999999999 5899999887777764
No 57
>PRK10018 putative glycosyl transferase; Provisional
Probab=97.89 E-value=8e-05 Score=79.20 Aligned_cols=43 Identities=26% Similarity=0.351 Sum_probs=38.1
Q ss_pred CCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCc
Q 003929 364 DLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAA 412 (786)
Q Consensus 364 ~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s 412 (786)
..|.|-|+||| |+++..+ ..||.|+++..||. +.++|.|||.+
T Consensus 3 ~~p~VSVIip~---yN~~~~l-~~~l~Svl~Qt~~~--~EiIVVDDgS~ 45 (279)
T PRK10018 3 DNPLISIYMPT---WNRQQLA-IRAIKSVLRQDYSN--WEMIIVDDCST 45 (279)
T ss_pred CCCEEEEEEEe---CCCHHHH-HHHHHHHHhCCCCC--eEEEEEECCCC
Confidence 46889999999 7998865 68999999999985 78999999987
No 58
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=97.85 E-value=0.00026 Score=76.86 Aligned_cols=41 Identities=24% Similarity=0.333 Sum_probs=35.5
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhccccc
Q 003929 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD 595 (786)
Q Consensus 550 ~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflD 595 (786)
.|++|+|++++. +.|++|+++|+|. ..+++.+.+.+-.+.+
T Consensus 149 G~~~A~~~Gi~~----a~gd~I~~~DaD~-~~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 149 GKGGAVRIGMLA----SRGKYILMVDADG-ATDIDDFDKLEDIMLK 189 (333)
T ss_pred ChHHHHHHHHHH----ccCCEEEEEeCCC-CCCHHHHHHHHHHHHH
Confidence 599999999987 4699999999999 5899998888877764
No 59
>PRK10073 putative glycosyl transferase; Provisional
Probab=97.84 E-value=0.00013 Score=78.98 Aligned_cols=44 Identities=11% Similarity=0.187 Sum_probs=38.7
Q ss_pred CCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCch
Q 003929 364 DLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 413 (786)
Q Consensus 364 ~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~ 413 (786)
..|.|-|+||+ ||++ ..+..++-|+++-.|+. +.|+|.|||.+.
T Consensus 4 ~~p~vSVIIP~---yN~~-~~L~~~l~Sl~~Qt~~~--~EIIiVdDgStD 47 (328)
T PRK10073 4 STPKLSIIIPL---YNAG-KDFRAFMESLIAQTWTA--LEIIIVNDGSTD 47 (328)
T ss_pred CCCeEEEEEec---cCCH-HHHHHHHHHHHhCCCCC--eEEEEEeCCCCc
Confidence 35889999999 7887 67899999999999974 789999999887
No 60
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=97.79 E-value=0.00025 Score=62.54 Aligned_cols=51 Identities=25% Similarity=0.290 Sum_probs=40.1
Q ss_pred CcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhccc-ccCCCCcceEEEecC
Q 003929 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPTSGKKICYVQFP 608 (786)
Q Consensus 549 h~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcff-lDp~~g~~vafVQtP 608 (786)
..+++++|.++..+ ++++++++|+|. +..|+++...+-.+ .++ +..+|+.+
T Consensus 63 ~g~~~~~~~~~~~~----~~d~v~~~d~D~-~~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 63 QGLAAARNAGLKAA----RGEYILFLDADD-LLLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred CChHHHHHHHHHHh----cCCEEEEECCCC-ccCccHHHHHHHHHhcCC----CceEEecc
Confidence 46999999999874 699999999999 58999998874443 343 35677776
No 61
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=0.0037 Score=72.07 Aligned_cols=105 Identities=24% Similarity=0.339 Sum_probs=77.4
Q ss_pred CCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc-cCCCCcceEEEecCccccCCCCCCCccch--
Q 003929 547 DHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQFPQRFDGIDRHDRYSNR-- 623 (786)
Q Consensus 547 ~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl-Dp~~g~~vafVQtPQ~F~nid~~D~~~n~-- 623 (786)
|-..||||+-...|-=| +.-.++|+||||- +-..+.+-+.+-.|. +|. .+++||--.-.|.+. .|+--
T Consensus 222 n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADS-vMtgd~lvrLv~~ME~~P~----aGlIQt~P~~~gg~T--L~AR~qQ 292 (736)
T COG2943 222 NVKRKAGNIADFCRRWG--SAYSYMLVLDADS-VMTGDCLVRLVRLMEANPD----AGLIQTSPKASGGDT--LYARCQQ 292 (736)
T ss_pred hhcccccCHHHHHHHhC--cccceEEEeeccc-ccCchHHHHHHHHHhhCCC----CceeecchhhcCcch--HHHHHHH
Confidence 55689999999998754 5678999999999 799999999998886 665 669999655444321 12211
Q ss_pred --hhhhhhhhccccccCCC--ceecccchhhhhhhh---cCCCC
Q 003929 624 --NVVFFDINMKGLDGIQG--PIYVGTGCVFRRQAL---YGYDA 660 (786)
Q Consensus 624 --~~vFf~ii~~g~Dg~~g--~~~~GTgcv~RR~AL---~G~~P 660 (786)
.+++=-+.-.|+.-|++ .-|=|-|+++|-+|. .|..|
T Consensus 293 FatrvYGpl~~~GLawW~~~Es~yWGHNAIIRt~aF~~hcgLp~ 336 (736)
T COG2943 293 FATRVYGPLFTAGLAWWQLGESHYWGHNAIIRTKAFIEHCGLPP 336 (736)
T ss_pred HHHHHhchHHhhhhHHHhccccccccccceeechhhHHhcCCCC
Confidence 12333466678888886 469999999999998 56533
No 62
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=97.64 E-value=4e-05 Score=74.36 Aligned_cols=83 Identities=27% Similarity=0.369 Sum_probs=62.2
Q ss_pred EEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCccchhhhhhhhh----ccccccCCC-ceec
Q 003929 570 YLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDIN----MKGLDGIQG-PIYV 644 (786)
Q Consensus 570 fILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vFf~ii----~~g~Dg~~g-~~~~ 644 (786)
+|+++|+|. .+.+++|++++.+|.+|+ +++||+|+.+++ .+..+.+-+.++|... ....+..+. ....
T Consensus 1 ~v~~~DaDt-~~~~d~l~~~~~~~~~~~----~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T PF13632_consen 1 YVLFLDADT-RLPPDFLERLVAALEDPK----VDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLS 73 (193)
T ss_pred CEEEEcCCC-CCChHHHHHHHHHHhCCC----ceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCcccc
Confidence 589999999 699999999999998764 889999999863 3455666677666321 122233443 4688
Q ss_pred ccchhhhhhhh---cCCC
Q 003929 645 GTGCVFRRQAL---YGYD 659 (786)
Q Consensus 645 GTgcv~RR~AL---~G~~ 659 (786)
|+|.++||+|| .|++
T Consensus 74 G~~~~~r~~~l~~vg~~~ 91 (193)
T PF13632_consen 74 GSGMLFRREALREVGGFD 91 (193)
T ss_pred CcceeeeHHHHHHhCccc
Confidence 99999999999 3554
No 63
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=97.62 E-value=0.0005 Score=71.24 Aligned_cols=111 Identities=17% Similarity=0.277 Sum_probs=66.4
Q ss_pred cEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccC
Q 003929 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDG 613 (786)
Q Consensus 534 ~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~n 613 (786)
.+.|+.-++.- ..|||+|.+++.. .-.+++||+.||.|- ++.+++|.+.+.++... +.++++|. |..+.
T Consensus 46 ~i~~i~~~~N~-----G~a~a~N~Gi~~a-~~~~~d~i~~lD~D~-~~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~~- 114 (281)
T TIGR01556 46 KIALIHLGDNQ-----GIAGAQNQGLDAS-FRRGVQGVLLLDQDS-RPGNAFLAAQWKLLSAE--NGQACALG-PRFFD- 114 (281)
T ss_pred CeEEEECCCCc-----chHHHHHHHHHHH-HHCCCCEEEEECCCC-CCCHHHHHHHHHHHHhc--CCceEEEC-CeEEc-
Confidence 35666655433 4899999999863 123689999999999 58899999999888642 22577776 43333
Q ss_pred CCCCCCccc--hhhhhhhhh-cccccc-CCCceecccchhhhhhhh
Q 003929 614 IDRHDRYSN--RNVVFFDIN-MKGLDG-IQGPIYVGTGCVFRRQAL 655 (786)
Q Consensus 614 id~~D~~~n--~~~vFf~ii-~~g~Dg-~~g~~~~GTgcv~RR~AL 655 (786)
.+....++. ....++... ...... ....+..++|+++||+++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sg~li~~~~~ 160 (281)
T TIGR01556 115 RGTSRRLPAIHLDGLLLRQISLDGLTTPQKTSFLISSGCLITREVY 160 (281)
T ss_pred CCCcccCCceeecccceeeecccccCCceeccEEEcCcceeeHHHH
Confidence 222222211 111111100 001111 123456788999999999
No 64
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=97.55 E-value=0.00043 Score=74.54 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=41.6
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc-cCCCCcceEEEec
Q 003929 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQF 607 (786)
Q Consensus 550 ~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl-Dp~~g~~vafVQt 607 (786)
.|++|+|.++.. +.+++|+.+|+|-...+|++|.+.+-.|. +|. +.+|..
T Consensus 102 Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~----~~~V~g 152 (306)
T PRK13915 102 GKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDPG----VHLVKA 152 (306)
T ss_pred CHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCCC----ceEEEE
Confidence 599999999986 57999999999994379999999998886 665 556664
No 65
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=97.18 E-value=0.0024 Score=67.40 Aligned_cols=108 Identities=11% Similarity=0.168 Sum_probs=68.5
Q ss_pred CcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCccchh----
Q 003929 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRN---- 624 (786)
Q Consensus 549 h~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n~~---- 624 (786)
--+|.|.|.++.. +++++|+.+|+|+ ++.|++|..++-+...=. ....+++-.|-.|.+.+....+-...
T Consensus 74 f~~a~arN~g~~~----A~~d~l~flD~D~-i~~~~~i~~~~~~~~~l~-~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~ 147 (281)
T PF10111_consen 74 FSRAKARNIGAKY----ARGDYLIFLDADC-IPSPDFIEKLLNHVKKLD-KNPNAFLVYPCLYLSEEGSEKFYSQFKNLW 147 (281)
T ss_pred cCHHHHHHHHHHH----cCCCEEEEEcCCe-eeCHHHHHHHHHHHHHHh-cCCCceEEEeeeeccchhhHHHhhcchhcc
Confidence 3689999999987 5899999999999 699999999999322100 11235666776666554432222111
Q ss_pred --hhhhhhhccccccCCCceecccchhhhhhhh---cCCCCCC
Q 003929 625 --VVFFDINMKGLDGIQGPIYVGTGCVFRRQAL---YGYDAPV 662 (786)
Q Consensus 625 --~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL---~G~~Pp~ 662 (786)
.++-.......+.+.....+|++.++||+++ .|++...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f 190 (281)
T PF10111_consen 148 DHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGFDERF 190 (281)
T ss_pred hHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCCCccc
Confidence 1111122222333444456778889999987 7887653
No 66
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=97.17 E-value=0.00047 Score=68.54 Aligned_cols=95 Identities=23% Similarity=0.247 Sum_probs=69.6
Q ss_pred CCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCccch-hhh
Q 003929 548 HHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNR-NVV 626 (786)
Q Consensus 548 Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n~-~~v 626 (786)
-+.|..||-++++. . ...++|+++|+|+ ..+|++|++.+.-|.||+ +++|..+.++.+.+ .+... -..
T Consensus 15 ~N~Kv~nL~~~~~~-~--a~~d~~~~~DsDi-~v~p~~L~~lv~~l~~p~----vglVt~~~~~~~~~---~~~~~l~~~ 83 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA-G--AKYDYLVISDSDI-RVPPDYLRELVAPLADPG----VGLVTGLPRGVPAR---GFWSRLEAA 83 (175)
T ss_pred CChHHHHHHHHHHh-h--CCCCEEEEECCCe-eECHHHHHHHHHHHhCCC----CcEEEecccccCCc---CHHHHHHHH
Confidence 47899999999986 2 6789999999999 589999999999999986 66998876655443 22222 112
Q ss_pred hh---hhhccccccCCCceecccchhhhhhhh
Q 003929 627 FF---DINMKGLDGIQGPIYVGTGCVFRRQAL 655 (786)
Q Consensus 627 Ff---~ii~~g~Dg~~g~~~~GTgcv~RR~AL 655 (786)
|+ -..+.. .-+..++.|...++||++|
T Consensus 84 ~~~~~~~~~~a--~~~~~~~~G~~m~~rr~~L 113 (175)
T PF13506_consen 84 FFNFLPGVLQA--LGGAPFAWGGSMAFRREAL 113 (175)
T ss_pred HHhHHHHHHHH--hcCCCceecceeeeEHHHH
Confidence 22 111111 2256789999999999999
No 67
>PRK10063 putative glycosyl transferase; Provisional
Probab=97.04 E-value=0.0033 Score=65.45 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=34.7
Q ss_pred CceeEEeccCCCCCCCHHHHHHHHHHHHcC-CCCCCccEEEEcCCCCch
Q 003929 366 ADIDIFVSTVDPMKEPPLITANTVLSILAV-DYPVDKVACYVSDDGAAM 413 (786)
Q Consensus 366 P~VDVFV~TaDP~kEPp~v~~nTVLS~lAl-DYP~~Kl~vYVsDDG~s~ 413 (786)
|.|-|+|+| |+|.. .+..|+.|++++ ..+...+.++|.|||.+.
T Consensus 1 ~~vSVIi~~---yN~~~-~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD 45 (248)
T PRK10063 1 MLLSVITVA---FRNLE-GIVKTHASLRHLAQDPGISFEWIVVDGGSND 45 (248)
T ss_pred CeEEEEEEe---CCCHH-HHHHHHHHHHHHHhCCCCCEEEEEEECcCcc
Confidence 568999999 78854 678999999864 333346889999999887
No 68
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.83 E-value=0.01 Score=52.53 Aligned_cols=43 Identities=21% Similarity=0.335 Sum_probs=39.0
Q ss_pred CCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCch
Q 003929 365 LADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 413 (786)
Q Consensus 365 LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~ 413 (786)
.|.|-|+||| |||+ ..+..+|.|++...|+. ..|.|.|||.+.
T Consensus 2 ~~~~siiip~---~n~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d 44 (291)
T COG0463 2 MPKVSVVIPT---YNEE-EYLPEALESLLNQTYKD--FEIIVVDDGSTD 44 (291)
T ss_pred CccEEEEEec---cchh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCC
Confidence 5789999999 7888 89999999999999997 559999999998
No 69
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=96.77 E-value=0.012 Score=63.86 Aligned_cols=40 Identities=13% Similarity=0.115 Sum_probs=35.4
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc
Q 003929 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM 594 (786)
Q Consensus 550 ~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl 594 (786)
.|++|+|++++. +.|++|+.+|||. ...|+.+.+.+-.+.
T Consensus 77 G~~~A~~~G~~~----A~gd~vv~~DaD~-q~~p~~i~~l~~~~~ 116 (325)
T PRK10714 77 GQHSAIMAGFSH----VTGDLIITLDADL-QNPPEEIPRLVAKAD 116 (325)
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCC-CCCHHHHHHHHHHHH
Confidence 588999999987 5799999999999 599999999888774
No 70
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.66 E-value=0.00081 Score=73.45 Aligned_cols=48 Identities=33% Similarity=1.018 Sum_probs=44.0
Q ss_pred cccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccc
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Y 88 (786)
.|..|=+.+.++ ..-|.+| -|||.|||.||..-|.+=|+.||-|...|
T Consensus 16 ~cplcie~mdit--dknf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 16 YCPLCIEPMDIT--DKNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred cCcccccccccc--cCCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 699999998876 3459999 99999999999999999999999999999
No 71
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.02 E-value=0.046 Score=55.41 Aligned_cols=42 Identities=12% Similarity=0.216 Sum_probs=36.1
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccC
Q 003929 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (786)
Q Consensus 550 ~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp 596 (786)
..+.+.|.++.. ..+++|+++|+|- +..++.+.+.+-++.+.
T Consensus 58 g~~~~~n~~~~~----a~~d~vl~lDaD~-~~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 58 GFGAQRNFALEL----ATNDWVLSLDADE-RLTPELADEILALLATD 99 (229)
T ss_pred ChHHHHHHHHHh----CCCCEEEEEeCCc-CcCHHHHHHHHHHHhCC
Confidence 478899999976 5688999999999 68999999999888753
No 72
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=95.72 E-value=0.11 Score=57.64 Aligned_cols=88 Identities=10% Similarity=0.240 Sum_probs=58.4
Q ss_pred CcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHH---HHhhcccc-cCCCCcceEEEecCccccCCCCCCCccch-
Q 003929 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKAL---REAMCFMM-DPTSGKKICYVQFPQRFDGIDRHDRYSNR- 623 (786)
Q Consensus 549 h~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~L---r~amcffl-Dp~~g~~vafVQtPQ~F~nid~~D~~~n~- 623 (786)
|+|+ |||.++.. .+++++++||-|. ++.|+|+ .++++++. |+ +|..|-. +|-.-.......
T Consensus 84 hyk~-aln~vF~~----~~~~~vIILEDDl-~~sPdFf~yf~~~l~~y~~D~----~v~~ISa----~NdnG~~~~~~~~ 149 (334)
T cd02514 84 HYKW-ALTQTFNL----FGYSFVIILEDDL-DIAPDFFSYFQATLPLLEEDP----SLWCISA----WNDNGKEHFVDDT 149 (334)
T ss_pred HHHH-HHHHHHHh----cCCCEEEEECCCC-ccCHhHHHHHHHHHHHHhcCC----CEEEEEe----eccCCcccccCCC
Confidence 5555 78888754 4799999999999 7999955 89999887 54 4667765 221000000000
Q ss_pred hhhhhhhhccccccCCCceecccchhhhhhhhcCCCC
Q 003929 624 NVVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDA 660 (786)
Q Consensus 624 ~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL~G~~P 660 (786)
...+| ..-++.|.|.+++|++...++|
T Consensus 150 ~~~ly----------rs~ff~glGWml~r~~W~e~~~ 176 (334)
T cd02514 150 PSLLY----------RTDFFPGLGWMLTRKLWKELEP 176 (334)
T ss_pred cceEE----------EecCCCchHHHHHHHHHHHhCC
Confidence 11222 2357899999999999977765
No 73
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=95.57 E-value=0.0086 Score=50.23 Aligned_cols=45 Identities=36% Similarity=0.963 Sum_probs=37.4
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCC--Ccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQ--CKTRY 88 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPq--Ckt~Y 88 (786)
+.+|.+||+.|- +|++.|.|.+|+=|.=|+||+++ +.|-- |++.+
T Consensus 5 ~~~C~~Cg~~~~---~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFK---DGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCccc---CCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 568999999974 47889999999999999999876 55655 77665
No 74
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=95.47 E-value=0.17 Score=53.99 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=49.6
Q ss_pred CcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCC-EEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEecCccc
Q 003929 533 PRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAP-YLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQFPQRF 611 (786)
Q Consensus 533 P~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~Tngp-fILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F 611 (786)
|.+.|+.-.+.-| =||+.|.+++.. +.++. |++.|+-|. +..+++|.+.+-.+... +..++|+.-.+.
T Consensus 56 ~~v~~i~~~~NlG-----~agg~n~g~~~a--~~~~~~~~l~LN~D~-~~~~~~l~~ll~~~~~~---~~~~~~~~~i~~ 124 (305)
T COG1216 56 PNVRLIENGENLG-----FAGGFNRGIKYA--LAKGDDYVLLLNPDT-VVEPDLLEELLKAAEED---PAAGVVGPLIRN 124 (305)
T ss_pred CcEEEEEcCCCcc-----chhhhhHHHHHH--hcCCCcEEEEEcCCe-eeChhHHHHHHHHHHhC---CCCeEeeeeEec
Confidence 3455665555444 488888887763 34443 999999997 79999999999888732 246777776665
Q ss_pred cC
Q 003929 612 DG 613 (786)
Q Consensus 612 ~n 613 (786)
++
T Consensus 125 ~~ 126 (305)
T COG1216 125 YD 126 (305)
T ss_pred CC
Confidence 44
No 75
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.22 E-value=0.02 Score=62.65 Aligned_cols=55 Identities=22% Similarity=0.518 Sum_probs=49.6
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~k 92 (786)
.++|.+|-.+..++.+=.++|. +|+-.+|+.|.+--...|...||+|++..++.+
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4799999999999988888888 999999999998877889999999999998764
No 76
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=89.18 E-value=0.4 Score=35.57 Aligned_cols=44 Identities=36% Similarity=0.850 Sum_probs=32.9
Q ss_pred cccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccc
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~ 87 (786)
.|.||.+.+ .+.++ ...|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~~-~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPVV-LLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCceE-ecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998886 22322 235899999999976666678899999875
No 77
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=87.96 E-value=0.32 Score=47.78 Aligned_cols=53 Identities=32% Similarity=0.755 Sum_probs=39.7
Q ss_pred CccccccCccccccCCCCceeecCC-CCCCcchhhhHHHHh--hCCCcCCCCcccccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNE-CAFPVCRPCYEYERR--EGNQACPQCKTRYKRIK 92 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~e-C~FpVCRpCYeyErk--eG~q~CPqCkt~Ykr~k 92 (786)
---|.||.|. ..-|-|.-=|| |||.||-.||--=.| .-.-+||-|||-||..+
T Consensus 80 lYeCnIC~et----S~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKET----SAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccc----cchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 3469999874 23445665555 599999999976666 45589999999998653
No 78
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=80.55 E-value=8.6 Score=40.50 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=34.3
Q ss_pred CcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhccc
Q 003929 533 PRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM 593 (786)
Q Consensus 533 P~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcff 593 (786)
+++.-..|.+.-|-. -|.=++|.+ ..|+||++.|||. .-+|+++-+.+-..
T Consensus 63 d~i~l~pR~~klGLg-----tAy~hgl~~----a~g~fiviMDaDl-sHhPk~ipe~i~lq 113 (238)
T KOG2978|consen 63 DNILLKPRTKKLGLG-----TAYIHGLKH----ATGDFIVIMDADL-SHHPKFIPEFIRLQ 113 (238)
T ss_pred CcEEEEeccCcccch-----HHHHhhhhh----ccCCeEEEEeCcc-CCCchhHHHHHHHh
Confidence 346667777654422 133344444 5799999999999 79999998865443
No 79
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=80.01 E-value=2 Score=35.29 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=34.0
Q ss_pred cccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccc
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
+|.||++-+ .+ +.+ ..||+-.||.|.+--.++ ++.||.|+.++.
T Consensus 3 ~Cpi~~~~~-~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~ 46 (63)
T smart00504 3 LCPISLEVM-KD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPLT 46 (63)
T ss_pred CCcCCCCcC-CC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCCC
Confidence 799999863 22 333 378999999999877766 688999998873
No 80
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=77.67 E-value=32 Score=40.92 Aligned_cols=41 Identities=20% Similarity=0.111 Sum_probs=33.0
Q ss_pred CCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCC-ccEEEEcC
Q 003929 365 LADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVD-KVACYVSD 408 (786)
Q Consensus 365 LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~-Kl~vYVsD 408 (786)
++.+=.+||+ |+|...-+..|+=|+...|||.. ||-+.|+|
T Consensus 24 ~~~~i~~v~c---y~E~~~~l~~tldsl~~~~y~~~~k~~~vi~D 65 (527)
T PF03142_consen 24 DKFVICLVPC---YSEGEEELRTTLDSLATTDYDDSRKLIFVICD 65 (527)
T ss_pred CceEEEEEcc---ccCChHHHHHHHHHHHhcCCCCcccEEEEEcC
Confidence 4455566776 99999999999999999999986 66566665
No 81
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=77.17 E-value=1.2 Score=53.62 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=17.0
Q ss_pred chhhhHHHHhhCCCcCCCCccccc
Q 003929 66 CRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 66 CRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
|.-|- .+...|..-||+|+++-.
T Consensus 30 Cp~CG-~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 30 CPQCG-TEVPVDEAHCPNCGAETG 52 (645)
T ss_pred CCCCC-CCCCcccccccccCCccc
Confidence 44444 446788899999999864
No 82
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=75.65 E-value=2.7 Score=44.71 Aligned_cols=46 Identities=35% Similarity=0.811 Sum_probs=37.2
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHH---HhhCCCcCCCCccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE---RREGNQACPQCKTRYK 89 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyE---rkeG~q~CPqCkt~Yk 89 (786)
---|.||=|.. =|+.|-| |+---|.||. |- ....++.||=||..-.
T Consensus 47 ~FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~Vs 95 (230)
T KOG0823|consen 47 FFDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEVS 95 (230)
T ss_pred ceeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCccccccc
Confidence 34899997763 3578888 9999999998 66 5688899999998763
No 83
>PHA02862 5L protein; Provisional
Probab=74.28 E-value=2.3 Score=42.62 Aligned_cols=49 Identities=31% Similarity=0.571 Sum_probs=32.2
Q ss_pred CccccccCccccccCCCCceeecCCC---CCCcchhhhHHH-HhhCCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNEC---AFPVCRPCYEYE-RREGNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC---~FpVCRpCYeyE-rkeG~q~CPqCkt~Ykr 90 (786)
+.+|.||-++ ++|..-+| .| .==|=+.|.+-= ...++..|++||++|.-
T Consensus 2 ~diCWIC~~~-----~~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDV-----CDERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCc-----CCCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 4689999886 23445777 44 112335665322 44788999999999964
No 84
>PHA02929 N1R/p28-like protein; Provisional
Probab=73.67 E-value=3.9 Score=43.73 Aligned_cols=55 Identities=20% Similarity=0.556 Sum_probs=39.5
Q ss_pred cCCccccccCccccccC-CCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccc
Q 003929 34 LSGQICQICGDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~-~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
.....|.||.+.+.-++ ....|..=..|+=.-|+.|.. +..+.++.||-|++++-
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcCCCCCCCCCEee
Confidence 34679999999876443 111233444789999999995 44556789999999874
No 85
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=73.12 E-value=2.3 Score=34.41 Aligned_cols=27 Identities=41% Similarity=0.920 Sum_probs=21.6
Q ss_pred ccccccCccccccCCCCceeecCCCCCCc
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAFPV 65 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpV 65 (786)
-+|.-||.++.++.. .-+-|.+|++.|
T Consensus 3 Y~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCC--CceECCCCCceE
Confidence 379999999888743 348899999876
No 86
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=73.02 E-value=0.85 Score=39.28 Aligned_cols=26 Identities=31% Similarity=0.539 Sum_probs=22.2
Q ss_pred hhhhHHHHhhCCCcCCCCcccccccc
Q 003929 67 RPCYEYERREGNQACPQCKTRYKRIK 92 (786)
Q Consensus 67 RpCYeyErkeG~q~CPqCkt~Ykr~k 92 (786)
+-|+|++..||.=.||.|+..|--.+
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~d 67 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIRD 67 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEET
T ss_pred hhhhcccccCCEEEcCCCCCEEeCCC
Confidence 56788899999999999999996543
No 87
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=72.05 E-value=3 Score=32.48 Aligned_cols=43 Identities=35% Similarity=0.732 Sum_probs=33.3
Q ss_pred cccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCc
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCK 85 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCk 85 (786)
.|.||-+++.. ++..+... |+=-.|+.|..-=.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999755 77777775 9999999998654444 57999995
No 88
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=70.96 E-value=3 Score=31.75 Aligned_cols=26 Identities=35% Similarity=0.925 Sum_probs=19.0
Q ss_pred cccccCccccccCCCCceeecCCCCCCc
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAFPV 65 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~FpV 65 (786)
+|.-||.+|.+... + -|-|.+|++.|
T Consensus 2 ~C~~Cg~~~~~~~~-~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKPG-D-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BSTS-S-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCCC-C-cEECCcCCCeE
Confidence 68899999997653 3 37999999875
No 89
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=70.66 E-value=1.9 Score=36.64 Aligned_cols=46 Identities=30% Similarity=0.679 Sum_probs=33.6
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~ 91 (786)
-|.|-.||..-.. ..+.+ |+--||+-|+.-||-.| ||=|++|+...
T Consensus 7 ~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 7 EQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred ceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 4566667765222 13344 59999999999999887 99999999653
No 90
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=68.54 E-value=3.9 Score=44.91 Aligned_cols=52 Identities=21% Similarity=0.558 Sum_probs=43.7
Q ss_pred cccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccc
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~ 91 (786)
-|.+|--++-++.+ ++.--|+|+.+.|-.|..-=-.-|...||.|.+..+..
T Consensus 2 ~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 58888888888754 66777799999999999777778999999999998654
No 91
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=68.05 E-value=1 Score=42.62 Aligned_cols=48 Identities=27% Similarity=0.699 Sum_probs=35.5
Q ss_pred cCCccccccCccccccC-CCCceeecCCCCCCcchhhhHHHHhhCCCcCCCC
Q 003929 34 LSGQICQICGDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~-~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqC 84 (786)
.+...|.+|+...|+-. .| ..|..|...||+.|-.|-.+++-=.|-=|
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred cCCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 36679999999988764 35 89999999999999988545555566555
No 92
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=66.09 E-value=5.9 Score=28.11 Aligned_cols=39 Identities=38% Similarity=0.935 Sum_probs=27.1
Q ss_pred ccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCC
Q 003929 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (786)
Q Consensus 39 CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqC 84 (786)
|.||.+. .....+ -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~-----~~~~~~--~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE-----LKDPVV--LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccC-----CCCcEE--ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 6788777 112222 25888899999976666677889987
No 93
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=66.07 E-value=73 Score=34.99 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=28.2
Q ss_pred hhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhc
Q 003929 552 AGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMC 591 (786)
Q Consensus 552 AGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amc 591 (786)
|-+=|.|| .+++-....+||-||+|..--.|+.|+..|-
T Consensus 128 AraRN~LL-~~aL~p~~swVlWlDaDIv~~P~~lI~dli~ 166 (269)
T PF03452_consen 128 ARARNFLL-SSALGPWHSWVLWLDADIVETPPTLIQDLIA 166 (269)
T ss_pred HHHHHHHH-HhhcCCcccEEEEEecCcccCChHHHHHHHh
Confidence 34447777 3455558889999999998777777777654
No 94
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=64.72 E-value=6.7 Score=40.92 Aligned_cols=52 Identities=29% Similarity=0.664 Sum_probs=35.4
Q ss_pred ccccCCccccccCccccccCCCCceeecCCCCCCcchhhhHHHH---------------hhCCCcCCCCccccc
Q 003929 31 VKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYER---------------REGNQACPQCKTRYK 89 (786)
Q Consensus 31 ~~~~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyEr---------------keG~q~CPqCkt~Yk 89 (786)
+...+.-.|.||-|.+- ++.+ -.|+--.|++|.+.-. +.+...||-|+++..
T Consensus 13 ~~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 13 VDSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred ccCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 33344569999998752 2333 2689999999996321 113468999999884
No 95
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=64.22 E-value=5.1 Score=44.64 Aligned_cols=52 Identities=29% Similarity=0.826 Sum_probs=43.4
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~ 91 (786)
...|.||++.. +.+--.|++| -|+|-+|-+|-- -.-+++..||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~~-t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCHK-TISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhhh-cccccCCCCCccCCccccC
Confidence 36899999985 4555679999 999999999983 4578999999999999764
No 96
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=62.99 E-value=6 Score=40.19 Aligned_cols=51 Identities=27% Similarity=0.517 Sum_probs=34.6
Q ss_pred CCccccccCccccccCCCCceeecCCCCC---CcchhhhHHH-HhhCCCcCCCCccccccc
Q 003929 35 SGQICQICGDEIEITDNGEPFVACNECAF---PVCRPCYEYE-RREGNQACPQCKTRYKRI 91 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~F---pVCRpCYeyE-rkeG~q~CPqCkt~Ykr~ 91 (786)
.+..|.||-++- ++..-+| .|.= -|=+.|.+-= ..-++..|++|+++|.-.
T Consensus 7 ~~~~CRIC~~~~-----~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 7 MDKCCWICKDEY-----DVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCeeEecCCCC-----CCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 456999997662 2344678 5532 3346787644 345789999999999654
No 97
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=62.48 E-value=5 Score=44.57 Aligned_cols=45 Identities=33% Similarity=0.896 Sum_probs=37.4
Q ss_pred cCCCCceeecCCCCCCc--------ch--hhhHHHHhhCCCcCCCCccccccccC
Q 003929 49 TDNGEPFVACNECAFPV--------CR--PCYEYERREGNQACPQCKTRYKRIKG 93 (786)
Q Consensus 49 ~~~Ge~FvAC~eC~FpV--------CR--pCYeyErkeG~q~CPqCkt~Ykr~kG 93 (786)
..+|...--|.-|+||| |+ .|||-+|.+-.+.||.|-.|-.|..-
T Consensus 84 k~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 84 KQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIEQ 138 (389)
T ss_pred cccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHHH
Confidence 34677677799999998 54 69999999999999999999988743
No 98
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=59.03 E-value=7.6 Score=43.33 Aligned_cols=63 Identities=30% Similarity=0.752 Sum_probs=45.7
Q ss_pred ccccCCccccc--cCccccccCCCCceeecCC-CCCCcchhhhH-----------------------HH-----------
Q 003929 31 VKELSGQICQI--CGDEIEITDNGEPFVACNE-CAFPVCRPCYE-----------------------YE----------- 73 (786)
Q Consensus 31 ~~~~~~~~Cqi--Cgd~Vg~~~~Ge~FvAC~e-C~FpVCRpCYe-----------------------yE----------- 73 (786)
+.+..|-.|.- ||..+-...| .--|.|.. |+|-.||.|.| +|
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e~yh~geC~~~~~as~t~tc~y~vde~~a~~arwd~a 388 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKEAYHEGECSAVFEASGTTTCAYRVDERAAEQARWDAA 388 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHhhhccccceeeeccccccceeeecChhhhhhhhhhhh
Confidence 45667889986 9987655542 23588877 99999999998 22
Q ss_pred ----HhhCCCcCCCCccccccccCC
Q 003929 74 ----RREGNQACPQCKTRYKRIKGS 94 (786)
Q Consensus 74 ----rkeG~q~CPqCkt~Ykr~kGs 94 (786)
.|-.++-||.|.++-.|--|+
T Consensus 389 s~~TIk~tTkpCPkChvptErnGGC 413 (446)
T KOG0006|consen 389 SKETIKKTTKPCPKCHVPTERNGGC 413 (446)
T ss_pred hhhhhhhccCCCCCccCccccCCce
Confidence 234567788888888776665
No 99
>PRK00420 hypothetical protein; Validated
Probab=58.93 E-value=4.1 Score=39.07 Aligned_cols=29 Identities=28% Similarity=0.742 Sum_probs=22.6
Q ss_pred eecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 56 VACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 56 vAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
-.|..|++|. ++.++|.-.||.|++.+.-
T Consensus 24 ~~CP~Cg~pL------f~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPL------FELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcc------eecCCCceECCCCCCeeee
Confidence 4688888886 3338899999999998854
No 100
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=58.76 E-value=5.3 Score=33.20 Aligned_cols=28 Identities=25% Similarity=0.791 Sum_probs=18.2
Q ss_pred cccccCccccccCCCCceeecCCCCCCcchhhhH
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYE 71 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYe 71 (786)
.|.|||.+||+... .-+ +=+| ||..|+.
T Consensus 1 ~C~iCg~kigl~~~--~k~---~DG~-iC~~C~~ 28 (51)
T PF14471_consen 1 KCAICGKKIGLFKR--FKI---KDGY-ICKDCLK 28 (51)
T ss_pred CCCccccccccccc--eec---cCcc-chHHHHH
Confidence 59999999999653 111 1123 7788874
No 101
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=54.62 E-value=9.9 Score=28.87 Aligned_cols=40 Identities=30% Similarity=0.693 Sum_probs=30.0
Q ss_pred ccccCccccccCCCCceeecCCCCCCcchhhhHHHHh-hCCCcCCCC
Q 003929 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR-EGNQACPQC 84 (786)
Q Consensus 39 CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErk-eG~q~CPqC 84 (786)
|.||.+...... --..|+=..|+.|..--.+ .+...||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 778887644322 2347899999999987766 788889988
No 103
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=53.93 E-value=13 Score=29.84 Aligned_cols=45 Identities=22% Similarity=0.576 Sum_probs=31.9
Q ss_pred cccccCccccccCCCCceeecCCCCCC-cchhhhHHHHhhCCCcCCCCcccccc
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~Fp-VCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
.|.||.+..-- -.|. .|+=- +|..|++--++ ....||-|+++.++
T Consensus 4 ~C~iC~~~~~~----~~~~---pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 4 ECPICFENPRD----VVLL---PCGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp B-TTTSSSBSS----EEEE---TTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCccCCccCCc----eEEe---CCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 69999987321 2344 45777 99999966666 77999999998753
No 104
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=53.68 E-value=12 Score=28.49 Aligned_cols=39 Identities=38% Similarity=0.920 Sum_probs=27.3
Q ss_pred ccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCC
Q 003929 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQC 84 (786)
Q Consensus 39 CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqC 84 (786)
|.||-+...- +++.- .||--.|+.|.+--.+. +..||.|
T Consensus 1 C~iC~~~~~~-----~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRD-----PVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SS-----EEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCcccC-----cCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 6788665322 44433 78999999999776666 7999987
No 105
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=53.55 E-value=4.7 Score=44.87 Aligned_cols=36 Identities=33% Similarity=0.886 Sum_probs=27.5
Q ss_pred cccccCccccccCCCCceeecCCC-CCCcchhhhHHHHhhC
Q 003929 38 ICQICGDEIEITDNGEPFVACNEC-AFPVCRPCYEYERREG 77 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC-~FpVCRpCYeyErkeG 77 (786)
-|.+|--++- .-.|+-|+|| +|-.|-||+---...|
T Consensus 7 hCdvC~~d~T----~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDMT----DLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhhh----cceeeeeecccccceehhhhhcccccc
Confidence 6888876643 4589999999 9999999995444344
No 106
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=52.04 E-value=9.9 Score=30.36 Aligned_cols=27 Identities=33% Similarity=0.867 Sum_probs=18.1
Q ss_pred cccccCccccccCCCCceeecCCCCCCc
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAFPV 65 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~FpV 65 (786)
.|+-||..+.+++... -+-|..|+.++
T Consensus 5 ~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 6888888877776554 35676666654
No 107
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=51.30 E-value=13 Score=29.50 Aligned_cols=36 Identities=25% Similarity=0.798 Sum_probs=27.6
Q ss_pred CccccccCccccccCCCCceeecCCC-CCCcchhhhHHHHhh
Q 003929 36 GQICQICGDEIEITDNGEPFVACNEC-AFPVCRPCYEYERRE 76 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC-~FpVCRpCYeyErke 76 (786)
...|..|+..| .|.-| -|.+| .|-+|..||..-+..
T Consensus 4 ~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~ 40 (44)
T smart00291 4 SYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAG 40 (44)
T ss_pred CcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcC
Confidence 45799999843 36666 79999 999999999754433
No 108
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=50.35 E-value=12 Score=42.95 Aligned_cols=30 Identities=20% Similarity=0.521 Sum_probs=22.3
Q ss_pred CceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccc
Q 003929 53 EPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (786)
Q Consensus 53 e~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~ 91 (786)
+.-++|++|+.-+ ..+...||+|++.-.|+
T Consensus 219 ~~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~ 248 (419)
T PRK15103 219 QGLRSCSCCTAIL---------PADQPVCPRCHTKGYVR 248 (419)
T ss_pred cCCCcCCCCCCCC---------CCCCCCCCCCCCcCcCC
Confidence 3467899999864 23445899999998665
No 109
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=50.20 E-value=48 Score=34.53 Aligned_cols=44 Identities=27% Similarity=0.390 Sum_probs=36.1
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhccc-ccCC
Q 003929 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFM-MDPT 597 (786)
Q Consensus 550 ~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcff-lDp~ 597 (786)
--|=++|.+++. +.++|++.+.=|-++.+++++.+++-.| .||+
T Consensus 41 s~~~~yN~a~~~----a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~ 85 (217)
T PF13712_consen 41 SMAAAYNEAMEK----AKAKYLVFLHQDVFIINENWLEDILEIFEEDPN 85 (217)
T ss_dssp -TTTHHHHHGGG------SSEEEEEETTEE-SSHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHh----CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCC
Confidence 467789999987 6799999999999999999999999999 7876
No 110
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=50.12 E-value=11 Score=31.90 Aligned_cols=33 Identities=30% Similarity=0.738 Sum_probs=24.9
Q ss_pred CCccccccCccccccCCCCceeecCCCCCCcchh
Q 003929 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRP 68 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRp 68 (786)
.+|+|..||..+..+..+..|+ |..|+|-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~-C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFT-CPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccceEE-cCCCCCEECcH
Confidence 5789999999988755666554 87898876554
No 111
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=48.25 E-value=95 Score=34.78 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=29.0
Q ss_pred chhhhHHHHHhhcccCCCCEEEEecCCC--CCCcHHHHHHhhcccccC
Q 003929 551 KAGAMNALIRVSAVISNAPYLLNVDCDH--YINNSKALREAMCFMMDP 596 (786)
Q Consensus 551 KAGALN~lLrvSa~~TngpfILnLDaD~--yinnp~~Lr~amcfflDp 596 (786)
|-||.--.+-. +.|.+||..|||- .+++-..|..+|.=...|
T Consensus 145 KGgAvR~g~l~----~rG~~ilfadAdGaTkf~d~ekLe~al~~~~~p 188 (323)
T KOG2977|consen 145 KGGAVRKGMLS----SRGQKILFADADGATKFADLEKLEKALNDKAGP 188 (323)
T ss_pred CCcceehhhHh----ccCceEEEEcCCCCccCCCHHHHHHHHHhhcCC
Confidence 66665544322 5799999999995 247778888888755543
No 112
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=48.02 E-value=11 Score=43.08 Aligned_cols=30 Identities=20% Similarity=0.541 Sum_probs=21.5
Q ss_pred ceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccc
Q 003929 54 PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (786)
Q Consensus 54 ~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~ 91 (786)
..++|++|+..+ . ......||+|++.--|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 367899999966 1 13346799999987544
No 113
>PRK04023 DNA polymerase II large subunit; Validated
Probab=47.64 E-value=12 Score=47.20 Aligned_cols=45 Identities=24% Similarity=0.629 Sum_probs=32.7
Q ss_pred cCCccccccCccccccCCCCceeecCCCCCC-----cchhhhHHHHhhC-CCcCCCCccccc
Q 003929 34 LSGQICQICGDEIEITDNGEPFVACNECAFP-----VCRPCYEYERREG-NQACPQCKTRYK 89 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~Fp-----VCRpCYeyErkeG-~q~CPqCkt~Yk 89 (786)
.....|.-||... ....|.+|+=. .|..| ++.+ .-.||.|++.-.
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCCC
Confidence 4566999999983 55789999843 67777 3433 367999998764
No 114
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=46.63 E-value=16 Score=29.27 Aligned_cols=31 Identities=32% Similarity=0.765 Sum_probs=25.1
Q ss_pred cccccCccccccCCCCceeecCCCC-CCcchhhhHHH
Q 003929 38 ICQICGDEIEITDNGEPFVACNECA-FPVCRPCYEYE 73 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~-FpVCRpCYeyE 73 (786)
.|.+|+..| . | ....|.+|. |-+|..||...
T Consensus 2 ~C~~C~~~i--~--g-~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 2 SCDGCLKPI--V--G-VRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCcCCCCCC--c--C-CEEECCCCCCCcCHHHHHCcC
Confidence 589999853 2 5 789999997 99999999643
No 115
>PRK07220 DNA topoisomerase I; Validated
Probab=45.62 E-value=11 Score=46.13 Aligned_cols=48 Identities=19% Similarity=0.653 Sum_probs=32.6
Q ss_pred ccccccCcccccc--CCCCceeecCCCCCCcchhhhHHHHh----hCCCcCCCCcc
Q 003929 37 QICQICGDEIEIT--DNGEPFVACNECAFPVCRPCYEYERR----EGNQACPQCKT 86 (786)
Q Consensus 37 ~~CqiCgd~Vg~~--~~Ge~FvAC~eC~FpVCRpCYeyErk----eG~q~CPqCkt 86 (786)
..|..||.++.+. ..|..|+.|. +||-|+--+-..++ .-+..||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4899999875542 3466799996 57888755533321 13478999985
No 116
>PRK12495 hypothetical protein; Provisional
Probab=45.31 E-value=11 Score=40.06 Aligned_cols=30 Identities=30% Similarity=0.847 Sum_probs=21.8
Q ss_pred ceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 54 PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 54 ~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
.-.-|.+|+.||= +..|...||-|.+.+.+
T Consensus 41 sa~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 41 TNAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred chhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 3345666666664 44899999999999864
No 117
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=44.83 E-value=18 Score=29.47 Aligned_cols=30 Identities=33% Similarity=1.017 Sum_probs=25.4
Q ss_pred cccccCccccccCCCCceeecCCC-CCCcchhhhH
Q 003929 38 ICQICGDEIEITDNGEPFVACNEC-AFPVCRPCYE 71 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC-~FpVCRpCYe 71 (786)
.|..|+.++. +...+.|.+| .|-+|-.||.
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhh
Confidence 5888987653 4588999999 9999999995
No 118
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=44.27 E-value=15 Score=35.56 Aligned_cols=49 Identities=33% Similarity=0.807 Sum_probs=36.1
Q ss_pred cCCccccccCcccccc--CCCCceeecCCCCCCcchhhhHH---HHhhCCCcCCCCcc
Q 003929 34 LSGQICQICGDEIEIT--DNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKT 86 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~--~~Ge~FvAC~eC~FpVCRpCYey---ErkeG~q~CPqCkt 86 (786)
..+++|..||....+- ..| -|+.|. .||.|+- |+- ...+....||+|+.
T Consensus 15 ~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 15 KTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred ccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 4578999999995554 568 999994 6999996 221 12255689999996
No 119
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=43.95 E-value=4.2e+02 Score=30.98 Aligned_cols=97 Identities=20% Similarity=0.206 Sum_probs=61.0
Q ss_pred CCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEE-ecCccccCCCCCCCccchhhh
Q 003929 548 HHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYV-QFPQRFDGIDRHDRYSNRNVV 626 (786)
Q Consensus 548 Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafV-QtPQ~F~nid~~D~~~n~~~v 626 (786)
-+-|--||=-+.|. ..-|+|++.|.|-. -.|+.+....-=|+.++ +.|+| |+|-.++ ..-.| ..-++ +
T Consensus 155 ~npKInN~mpgy~~----a~ydlvlisDsgI~-m~pdtildm~t~M~she---kmalvtq~py~~d-r~Gf~-atle~-~ 223 (431)
T KOG2547|consen 155 LNPKINNMMPGYRA----AKYDLVLISDSGIF-MKPDTILDMATTMMSHE---KMALVTQTPYCKD-RQGFD-ATLEQ-V 223 (431)
T ss_pred cChhhhccCHHHHH----hcCCEEEEecCCee-ecCchHHHHHHhhhccc---ceeeecCCceeec-cccch-hhhhh-e
Confidence 34566666666665 56789999999995 89999998888888653 57777 7774432 22212 11122 4
Q ss_pred hhhhhccc----cccCCCceecccchhhhhhhh
Q 003929 627 FFDINMKG----LDGIQGPIYVGTGCVFRRQAL 655 (786)
Q Consensus 627 Ff~ii~~g----~Dg~~g~~~~GTgcv~RR~AL 655 (786)
||..-++. -|-.+--...|-.|++|++||
T Consensus 224 ~fgTsh~r~yl~~n~~~~~c~tgms~~mrK~~l 256 (431)
T KOG2547|consen 224 YFGTSHPRIYLSGNVLGFNCSTGMSSMMRKEAL 256 (431)
T ss_pred eeccCCceEEEccccccccccccHHHHHHHHHH
Confidence 55432221 122233346777899999999
No 120
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=43.00 E-value=22 Score=39.18 Aligned_cols=40 Identities=15% Similarity=0.296 Sum_probs=28.9
Q ss_pred CCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEe
Q 003929 566 SNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQ 606 (786)
Q Consensus 566 TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQ 606 (786)
+..+||+++|.|| +|.+++-...+-+..--....+.+||=
T Consensus 126 a~T~~v~~~DvD~-~ps~~l~~~l~~~~~~~~~~~~~a~Vv 165 (317)
T PF13896_consen 126 ARTDYVFLLDVDF-LPSPGLYEKLLRFARRNIDKSKTAFVV 165 (317)
T ss_pred cCcceEEEeccee-eeCcchHHHHHHHhhhhccCCceEEEE
Confidence 5579999999999 699888777766664322345566664
No 121
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=42.98 E-value=62 Score=37.60 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=34.4
Q ss_pred CCCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCcc-EEEEcCC
Q 003929 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKV-ACYVSDD 409 (786)
Q Consensus 362 ~~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl-~vYVsDD 409 (786)
+.+||++.|+|.- .+|--..+++||.|++.-- |.+-| .|.+.||
T Consensus 151 pe~Lpt~SVviVF---HNEGws~LmRTVHSVi~Rs-P~~~l~eivlvDD 195 (603)
T KOG3737|consen 151 PENLPTSSVVIVF---HNEGWSTLMRTVHSVIKRS-PRKYLAEIVLVDD 195 (603)
T ss_pred cccCCcceEEEEE---ecCccHHHHHHHHHHHhcC-cHHhhheEEEecc
Confidence 5789999999998 6999999999999988654 43333 3556666
No 122
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=42.74 E-value=11 Score=43.61 Aligned_cols=50 Identities=26% Similarity=0.668 Sum_probs=34.9
Q ss_pred CccccccCccccccCCCCceeecCCCC-CCcchhhhHHHHhhCCCcCCCCcccccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECA-FPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~-FpVCRpCYeyErkeG~q~CPqCkt~Ykr~k 92 (786)
...|..|..+| +|-.+|-|.||. |-+|-+|+.--..-|.. ||.-+|.-.+
T Consensus 14 ky~C~~C~~di----t~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~ 64 (438)
T KOG0457|consen 14 KYNCDYCSLDI----TGLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMD 64 (438)
T ss_pred CCCCccHhHHh----ccceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeec
Confidence 34899999875 477899999998 99999999433222322 4445665443
No 123
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=41.47 E-value=16 Score=26.81 Aligned_cols=28 Identities=39% Similarity=1.017 Sum_probs=12.0
Q ss_pred cccccCccccccCCCCceeecCCCCCCcchhh
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPC 69 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpC 69 (786)
.|.+|+..+. |..+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID----GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS--------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC----CCceEECccCCCccChhc
Confidence 5899998854 368899999999998877
No 124
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=39.28 E-value=12 Score=41.79 Aligned_cols=30 Identities=27% Similarity=0.869 Sum_probs=24.8
Q ss_pred CCCcchhhhHHHHhhCC--CcCCCCccccccc
Q 003929 62 AFPVCRPCYEYERREGN--QACPQCKTRYKRI 91 (786)
Q Consensus 62 ~FpVCRpCYeyErkeG~--q~CPqCkt~Ykr~ 91 (786)
+|-||+.|+-.-+-.-+ +-||-|.++|+.-
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~ 32 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEE 32 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchh
Confidence 57899999977666666 8999999999744
No 125
>PHA02926 zinc finger-like protein; Provisional
Probab=39.22 E-value=33 Score=36.87 Aligned_cols=61 Identities=26% Similarity=0.580 Sum_probs=42.2
Q ss_pred cCCccccccCcccccc--CCCCceeecCCCCCCcchhhhHHHHhh-----CCCcCCCCccccccccCC
Q 003929 34 LSGQICQICGDEIEIT--DNGEPFVACNECAFPVCRPCYEYERRE-----GNQACPQCKTRYKRIKGS 94 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~--~~Ge~FvAC~eC~FpVCRpCYeyErke-----G~q~CPqCkt~Ykr~kGs 94 (786)
.....|.||=+.|--. ++...|--=..|+-.-|..|..-=++. +...||.|+++++...=|
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 4456999999987543 222234334468889999999766653 246799999999865433
No 126
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=39.11 E-value=16 Score=30.58 Aligned_cols=29 Identities=24% Similarity=0.586 Sum_probs=20.8
Q ss_pred CccccccCccccccCCCCceeecCCCCCCc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPV 65 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpV 65 (786)
.-+|..||.+|.++. ...-+.|..|+|.|
T Consensus 6 ~Y~C~~Cg~~~~~~~-~~~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVELDQ-ETRGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCeeehhh-ccCceeCCCCCcEE
Confidence 347999999995443 22348898898875
No 127
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=38.07 E-value=17 Score=43.22 Aligned_cols=41 Identities=27% Similarity=0.569 Sum_probs=25.6
Q ss_pred ccCCccccccCccccccCCCCc-----------eee-----cCCCCCCcchhhhHHH
Q 003929 33 ELSGQICQICGDEIEITDNGEP-----------FVA-----CNECAFPVCRPCYEYE 73 (786)
Q Consensus 33 ~~~~~~CqiCgd~Vg~~~~Ge~-----------FvA-----C~eC~FpVCRpCYeyE 73 (786)
.....+|.|||.+-.++.+-.. |++ =.-=.||||..||..-
T Consensus 195 ~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~l 251 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALKL 251 (593)
T ss_pred cCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHHH
Confidence 3455689999999555444322 222 0123789999999553
No 128
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=37.95 E-value=22 Score=30.86 Aligned_cols=31 Identities=26% Similarity=0.770 Sum_probs=24.7
Q ss_pred cCCccccccCcc---ccccCCCCceeecCCCCCC
Q 003929 34 LSGQICQICGDE---IEITDNGEPFVACNECAFP 64 (786)
Q Consensus 34 ~~~~~CqiCgd~---Vg~~~~Ge~FvAC~eC~Fp 64 (786)
..|-+|.-|+.- +...+||...|-|-+|+|.
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred eccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 356689999854 5556899999999999985
No 129
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=37.83 E-value=33 Score=26.94 Aligned_cols=43 Identities=23% Similarity=0.743 Sum_probs=31.3
Q ss_pred ccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcc
Q 003929 39 CQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKT 86 (786)
Q Consensus 39 CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt 86 (786)
|.+|-... +++..+++ = .|+=-+|..|.+--- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l-~-~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRL-T-SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEE-c-ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 88898887 33333322 2 689999999996554 66789999985
No 130
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=37.50 E-value=18 Score=36.65 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=40.5
Q ss_pred cccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccc
Q 003929 45 EIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 45 ~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
-||+..+|-.-+-|.-|+|..|..=.|-++..-+-+=|+|.-+|-
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~i 121 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYI 121 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhh
Confidence 478889999999999999999999888888888889999999994
No 131
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=36.29 E-value=27 Score=27.73 Aligned_cols=45 Identities=24% Similarity=0.792 Sum_probs=32.0
Q ss_pred cccccCccccccCCCCceeecCCCCCCcchhhhHHHHh-----hCCCcCCCCcc
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR-----EGNQACPQCKT 86 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErk-----eG~q~CPqCkt 86 (786)
+|+|||. ..+++..|.|..|.--+=..|.....+ ++.=.||.|..
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5899999 566778999999987666677655422 33566776653
No 132
>PRK04296 thymidine kinase; Provisional
Probab=36.28 E-value=18 Score=36.58 Aligned_cols=35 Identities=34% Similarity=0.647 Sum_probs=23.9
Q ss_pred ccccccCccccc----c------CCCCc-eeecCCCCCCcchhhhH
Q 003929 37 QICQICGDEIEI----T------DNGEP-FVACNECAFPVCRPCYE 71 (786)
Q Consensus 37 ~~CqiCgd~Vg~----~------~~Ge~-FvAC~eC~FpVCRpCYe 71 (786)
.+|..||.+--. . .+|+. .+--.|=-.|+||.||.
T Consensus 141 ~vC~~Cg~~a~~~~r~~~~~~~~~~~~~~~ig~~e~Y~~~Cr~c~~ 186 (190)
T PRK04296 141 AICVHCGRKATMNQRLIDGGPAVYEGPQVLVGGNESYEAVCRKHYK 186 (190)
T ss_pred EEccccCCccceEEEEeCCCCccCCCCEEEECCcCcEEehhHHhhh
Confidence 489999987332 2 24444 35555667899999994
No 133
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=35.93 E-value=13 Score=28.04 Aligned_cols=18 Identities=28% Similarity=0.678 Sum_probs=12.0
Q ss_pred HHHhhCCCcCCCCccccc
Q 003929 72 YERREGNQACPQCKTRYK 89 (786)
Q Consensus 72 yErkeG~q~CPqCkt~Yk 89 (786)
|+-++....||.|+.+-.
T Consensus 11 y~~~~~~~~CP~Cg~~~~ 28 (33)
T cd00350 11 YDGEEAPWVCPVCGAPKD 28 (33)
T ss_pred ECCCcCCCcCcCCCCcHH
Confidence 443446689999987643
No 134
>PRK11827 hypothetical protein; Provisional
Probab=35.86 E-value=25 Score=30.54 Aligned_cols=32 Identities=22% Similarity=0.430 Sum_probs=17.7
Q ss_pred CcchhhhHHHHhhCCCcCCCCccccccccCCC
Q 003929 64 PVCRPCYEYERREGNQACPQCKTRYKRIKGSP 95 (786)
Q Consensus 64 pVCRpCYeyErkeG~q~CPqCkt~Ykr~kGsp 95 (786)
|+|+-=.+|...+..-+|..|+-.|--..|=|
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIP 43 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIP 43 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCcc
Confidence 44444334433333467788888886654444
No 135
>PRK03982 heat shock protein HtpX; Provisional
Probab=35.58 E-value=1.2e+02 Score=32.84 Aligned_cols=67 Identities=10% Similarity=0.076 Sum_probs=33.0
Q ss_pred HHHHHhhcccccccccchhhhhhhhhhhcCCCCCCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCC
Q 003929 330 VSWILDQFPKWDPIVRETYLDRLSLRYEKEGKPSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDD 409 (786)
Q Consensus 330 f~wiL~q~~kw~Pv~R~t~~drL~~r~e~~~~~~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDD 409 (786)
-.|++-.+.+.+|+.+...++ |...+++-.....+|...|+|--. .+| .+.++-....+-.|.|+|.
T Consensus 49 ~~~i~~~~~~~~~l~~~~~p~-L~~~v~~la~~~g~~~p~v~v~~~---~~~---------NAfa~G~~~~~~~V~vt~g 115 (288)
T PRK03982 49 SDKIVLASYNARIVSEEEAPE-LYRIVERLAERANIPKPKVAIVPT---QTP---------NAFATGRDPKHAVVAVTEG 115 (288)
T ss_pred hHHHHHHhcCCEECChhhhHH-HHHHHHHHHHHcCCCCCeEEEEeC---CCc---------ceEEeccCCCCeEEEeehH
Confidence 355555667888887655432 222222111123456567766431 233 3555555444545666653
No 136
>PRK07219 DNA topoisomerase I; Validated
Probab=35.12 E-value=22 Score=44.10 Aligned_cols=53 Identities=28% Similarity=0.736 Sum_probs=31.9
Q ss_pred CccccccCcccccc--CCCCceeecCCCCCCcchhhhHHHH----hhCCCcCCCCccccccc
Q 003929 36 GQICQICGDEIEIT--DNGEPFVACNECAFPVCRPCYEYER----REGNQACPQCKTRYKRI 91 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~--~~Ge~FvAC~eC~FpVCRpCYeyEr----keG~q~CPqCkt~Ykr~ 91 (786)
...|..||..+.+. ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 34688887765443 3455 88885 6777753332211 12347899999876543
No 137
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.95 E-value=32 Score=39.58 Aligned_cols=53 Identities=25% Similarity=0.622 Sum_probs=36.8
Q ss_pred ccccccCC-ccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccc
Q 003929 29 TSVKELSG-QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 29 ~~~~~~~~-~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
+.+..+.. ..|.||.+..- ++++ -.|+--.|..|...-... ...||.|++.+.
T Consensus 18 ~~l~~Le~~l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 18 PSLYPLDTSLRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred ccccccccccCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 34555444 48999987642 2333 368999999999755443 458999999874
No 138
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=34.93 E-value=13 Score=42.63 Aligned_cols=70 Identities=23% Similarity=0.507 Sum_probs=44.4
Q ss_pred CCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccc---cc--ccCCCCCCCCCCCCCc
Q 003929 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY---KR--IKGSPRVDGDEEEDDT 106 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Y---kr--~kGsprV~Gd~ee~~~ 106 (786)
-+-.|..||+-+|+...----.+|-.=--- |==|||=-+.|.+.||-|+.-- +| .-|+|-|+.+-++-++
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~--rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vesest~~~v 438 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHL--RCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESESTDRCV 438 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHH--HHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCccccccccccc
Confidence 355899999999998654445555211001 1126677899999999998321 22 2367788777554444
No 139
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=34.47 E-value=42 Score=29.01 Aligned_cols=48 Identities=29% Similarity=0.744 Sum_probs=35.1
Q ss_pred ccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
.-|..|+.++--+. .+-++-=.||-| |.+|-|-.. +.+||-|+--+-+
T Consensus 6 pnCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 6 PNCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CCccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 36999999965543 355666679987 999997654 4799999876643
No 140
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=34.43 E-value=8.3 Score=36.49 Aligned_cols=30 Identities=30% Similarity=0.716 Sum_probs=15.9
Q ss_pred eeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccc
Q 003929 55 FVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (786)
Q Consensus 55 FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~ 91 (786)
-+-|+.|+. +|+..+..-.||+|+.+..+.
T Consensus 70 ~~~C~~Cg~-------~~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 70 RARCRDCGH-------EFEPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp EEEETTTS--------EEECHHCCHH-SSSSSS-EEE
T ss_pred cEECCCCCC-------EEecCCCCCCCcCCcCCCcEE
Confidence 355666664 233344445599999986443
No 141
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=33.54 E-value=12 Score=35.45 Aligned_cols=27 Identities=22% Similarity=0.571 Sum_probs=17.9
Q ss_pred eeecCCCCCCcchhhhHHHHhhCCCcCCCCcccc
Q 003929 55 FVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (786)
Q Consensus 55 FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Y 88 (786)
.+-|+.|+ ++++..+-.-.||+|+.+=
T Consensus 70 ~~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~ 96 (113)
T PRK12380 70 QAWCWDCS-------QVVEIHQHDAQCPHCHGER 96 (113)
T ss_pred EEEcccCC-------CEEecCCcCccCcCCCCCC
Confidence 35576666 4556555556799999753
No 142
>PRK14973 DNA topoisomerase I; Provisional
Probab=33.44 E-value=28 Score=44.00 Aligned_cols=48 Identities=23% Similarity=0.695 Sum_probs=31.7
Q ss_pred ccccccCcccccc--CCCCceeecCCCCCCcchhhhHHHHh-hC-----CCcCCCCccc
Q 003929 37 QICQICGDEIEIT--DNGEPFVACNECAFPVCRPCYEYERR-EG-----NQACPQCKTR 87 (786)
Q Consensus 37 ~~CqiCgd~Vg~~--~~Ge~FvAC~eC~FpVCRpCYeyErk-eG-----~q~CPqCkt~ 87 (786)
..|..||.++-+. ..|. |..|. +||-|+-.+...+. .| .+.||.|+.+
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 4799999876532 3444 99996 66888855544221 12 3689999974
No 143
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=33.17 E-value=14 Score=37.37 Aligned_cols=34 Identities=38% Similarity=0.983 Sum_probs=21.6
Q ss_pred ccccccCccccc----cCCCCc-eeecCCCCCCcchhhh
Q 003929 37 QICQICGDEIEI----TDNGEP-FVACNECAFPVCRPCY 70 (786)
Q Consensus 37 ~~CqiCgd~Vg~----~~~Ge~-FvAC~eC~FpVCRpCY 70 (786)
.+|..||.+--. ..+|+. .|--.|=-.|+||.||
T Consensus 138 avC~~Cg~~A~~t~R~~~~~~~i~iGg~e~Y~~~Cr~cy 176 (176)
T PF00265_consen 138 AVCEVCGRKATFTQRIVDDGEQILIGGSEKYEPVCRKCY 176 (176)
T ss_dssp EE-TTTSSEE-EEEEEETTSSSS-TTSTTTEEEE-CTTH
T ss_pred cEECCCCCceeEEEEEcCCCCEEEECCCCeEEEechhhC
Confidence 589999988332 244443 5555788899999998
No 144
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=32.54 E-value=34 Score=27.93 Aligned_cols=33 Identities=21% Similarity=0.547 Sum_probs=25.3
Q ss_pred cccccCccccccCCCCceeecCCCC-CCcchhhhHHHHh
Q 003929 38 ICQICGDEIEITDNGEPFVACNECA-FPVCRPCYEYERR 75 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~-FpVCRpCYeyErk 75 (786)
.|.+||-++. .+..-|-.++ +-+|.+||+-.|-
T Consensus 2 ~C~~Cg~D~t-----~vryh~~~~~~~dLC~~CF~~G~f 35 (45)
T cd02336 2 HCFTCGNDCT-----RVRYHNLKAKKYDLCPSCYQEGRF 35 (45)
T ss_pred cccCCCCccC-----ceEEEecCCCccccChHHHhCcCC
Confidence 6999999974 2667777776 9999999964443
No 145
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=32.52 E-value=16 Score=34.91 Aligned_cols=28 Identities=14% Similarity=0.610 Sum_probs=15.8
Q ss_pred eecCCCCCCcchhhhHHHHhhCC-CcCCCCcccccc
Q 003929 56 VACNECAFPVCRPCYEYERREGN-QACPQCKTRYKR 90 (786)
Q Consensus 56 vAC~eC~FpVCRpCYeyErkeG~-q~CPqCkt~Ykr 90 (786)
+-|+.|+ ++++..+-. ..||+|+.+-.+
T Consensus 72 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 72 LECKDCS-------HVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred EEhhhCC-------CccccCCccCCcCcCCCCCceE
Confidence 4466665 334433322 359999987544
No 146
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=31.99 E-value=58 Score=28.35 Aligned_cols=49 Identities=27% Similarity=0.575 Sum_probs=35.5
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCC-CcCCCCcc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN-QACPQCKT 86 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~-q~CPqCkt 86 (786)
...|..||-.|.-.+.+ +-.+|.+|+=-+-+=|. .-||-++ -.||.|+-
T Consensus 7 ~~~CtSCg~~i~~~~~~-~~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 7 PPKCTSCGIEIAPREKA-VKFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCGF 56 (59)
T ss_pred CccccCCCCcccCCCcc-CEeeCCCCCCeeEeech-hHHhcCCceECCCCCC
Confidence 45899999998666555 45579999877444466 5577776 57999973
No 147
>PRK11595 DNA utilization protein GntX; Provisional
Probab=31.72 E-value=28 Score=36.34 Aligned_cols=38 Identities=24% Similarity=0.706 Sum_probs=25.3
Q ss_pred ccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccc
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~ 87 (786)
+.|.+||..+..++ ..+|..|.+.-..- ...||+|+.+
T Consensus 6 ~~C~~C~~~~~~~~------------~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 6 GLCWLCRMPLALSH------------WGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CcCccCCCccCCCC------------CcccHHHHhhCCcc-cCcCccCCCc
Confidence 57999998874321 23788887654332 3589999865
No 148
>COG2191 Formylmethanofuran dehydrogenase subunit E [Energy production and conversion]
Probab=30.61 E-value=27 Score=36.84 Aligned_cols=26 Identities=42% Similarity=0.945 Sum_probs=19.7
Q ss_pred CccccccCcccccc----CCCCceeecCCCCCCcchhhhH
Q 003929 36 GQICQICGDEIEIT----DNGEPFVACNECAFPVCRPCYE 71 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~----~~Ge~FvAC~eC~FpVCRpCYe 71 (786)
..+|..||+-++-. .||+ |||++||+
T Consensus 172 ~v~C~kCGE~~~e~~~~~~ng~----------~vC~~C~~ 201 (206)
T COG2191 172 SVRCSKCGELFMEPRAVVLNGK----------PVCKPCAE 201 (206)
T ss_pred eeeccccCcccccchhhhcCCc----------eecccccc
Confidence 35999999986543 3666 68999985
No 149
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=29.87 E-value=17 Score=31.42 Aligned_cols=12 Identities=42% Similarity=1.157 Sum_probs=6.5
Q ss_pred CcCCCCcccccc
Q 003929 79 QACPQCKTRYKR 90 (786)
Q Consensus 79 q~CPqCkt~Ykr 90 (786)
-+||+||.-|..
T Consensus 45 PVCP~Ck~iye~ 56 (58)
T PF11238_consen 45 PVCPECKEIYES 56 (58)
T ss_pred CCCcCHHHHHHh
Confidence 345666666543
No 150
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=28.92 E-value=23 Score=26.82 Aligned_cols=25 Identities=40% Similarity=1.023 Sum_probs=11.8
Q ss_pred ccccccCccccccCCCCceeecCCCCC
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAF 63 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~F 63 (786)
+.|..|+.+-.+ +||.+|| |.+|++
T Consensus 3 p~Cp~C~se~~y-~D~~~~v-Cp~C~~ 27 (30)
T PF08274_consen 3 PKCPLCGSEYTY-EDGELLV-CPECGH 27 (30)
T ss_dssp ---TTT-----E-E-SSSEE-ETTTTE
T ss_pred CCCCCCCCccee-ccCCEEe-CCcccc
Confidence 357788887666 6777766 778875
No 151
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=28.89 E-value=17 Score=30.34 Aligned_cols=7 Identities=43% Similarity=1.365 Sum_probs=3.4
Q ss_pred cCCCCcc
Q 003929 80 ACPQCKT 86 (786)
Q Consensus 80 ~CPqCkt 86 (786)
.||.|+.
T Consensus 36 ~CP~C~a 42 (50)
T cd00730 36 VCPVCGA 42 (50)
T ss_pred CCCCCCC
Confidence 4555543
No 152
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.83 E-value=15 Score=41.53 Aligned_cols=45 Identities=33% Similarity=0.750 Sum_probs=38.2
Q ss_pred cccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccc
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Y 88 (786)
+|.||-+=|-.+- -=.||+-.+|+.|.--..+.||.-||-|++..
T Consensus 45 ~c~icl~llk~tm------ttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 45 ICPICLSLLKKTM------TTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred ccHHHHHHHHhhc------ccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 8999988765542 22489999999999999999999999999876
No 153
>PRK14873 primosome assembly protein PriA; Provisional
Probab=28.82 E-value=39 Score=41.19 Aligned_cols=11 Identities=27% Similarity=0.887 Sum_probs=6.9
Q ss_pred CCcCCCCcccc
Q 003929 78 NQACPQCKTRY 88 (786)
Q Consensus 78 ~q~CPqCkt~Y 88 (786)
...||.|+...
T Consensus 422 p~~Cp~Cgs~~ 432 (665)
T PRK14873 422 DWRCPRCGSDR 432 (665)
T ss_pred CccCCCCcCCc
Confidence 45677776654
No 154
>PTZ00293 thymidine kinase; Provisional
Probab=28.75 E-value=27 Score=36.90 Aligned_cols=35 Identities=23% Similarity=0.726 Sum_probs=22.5
Q ss_pred ccccccCcccc----ccCCCCc-eeecCCCCCCcchhhhH
Q 003929 37 QICQICGDEIE----ITDNGEP-FVACNECAFPVCRPCYE 71 (786)
Q Consensus 37 ~~CqiCgd~Vg----~~~~Ge~-FvAC~eC~FpVCRpCYe 71 (786)
.+|..||.+-- +.++|+. .+-=+|=--++||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 59999998843 2334444 23223445789999995
No 155
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=28.13 E-value=41 Score=28.55 Aligned_cols=13 Identities=46% Similarity=0.992 Sum_probs=10.5
Q ss_pred cccccCccccccC
Q 003929 38 ICQICGDEIEITD 50 (786)
Q Consensus 38 ~CqiCgd~Vg~~~ 50 (786)
.|..||..|.+..
T Consensus 4 ~CP~CG~~iev~~ 16 (54)
T TIGR01206 4 ECPDCGAEIELEN 16 (54)
T ss_pred CCCCCCCEEecCC
Confidence 7899999988753
No 156
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=27.79 E-value=21 Score=33.96 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=15.9
Q ss_pred eecCCCCCCcchhhhHHHHhhCC-CcCCCCccccc
Q 003929 56 VACNECAFPVCRPCYEYERREGN-QACPQCKTRYK 89 (786)
Q Consensus 56 vAC~eC~FpVCRpCYeyErkeG~-q~CPqCkt~Yk 89 (786)
.-|+.|+ ++++..+-. -.||+|+.+-.
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~ 98 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGDML 98 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCCCc
Confidence 4466666 244444333 56999997643
No 157
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=27.74 E-value=42 Score=38.52 Aligned_cols=35 Identities=29% Similarity=0.636 Sum_probs=23.2
Q ss_pred ceeecCCCCCCcchhhhHHHHhhC-CCcCCCCcccccccc
Q 003929 54 PFVACNECAFPVCRPCYEYERREG-NQACPQCKTRYKRIK 92 (786)
Q Consensus 54 ~FvAC~eC~FpVCRpCYeyErkeG-~q~CPqCkt~Ykr~k 92 (786)
..++|+||+.-+=+| ..+.| .-.||+|++.-.|++
T Consensus 12 ~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~~ 47 (403)
T TIGR00155 12 KHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVGW 47 (403)
T ss_pred CeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCCC
Confidence 367899998764333 12233 357999999987664
No 158
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=27.57 E-value=17 Score=25.72 Aligned_cols=13 Identities=31% Similarity=0.869 Sum_probs=6.3
Q ss_pred hhCCCcCCCCccc
Q 003929 75 REGNQACPQCKTR 87 (786)
Q Consensus 75 keG~q~CPqCkt~ 87 (786)
.++.+-||+|+++
T Consensus 10 ~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 10 EDDAKFCPNCGTP 22 (23)
T ss_pred CCcCcchhhhCCc
Confidence 3444445555543
No 159
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=27.50 E-value=17 Score=26.08 Aligned_cols=15 Identities=27% Similarity=0.731 Sum_probs=10.2
Q ss_pred HHhhCCCcCCCCccc
Q 003929 73 ERREGNQACPQCKTR 87 (786)
Q Consensus 73 ErkeG~q~CPqCkt~ 87 (786)
+..++...||.|+++
T Consensus 11 ~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 11 EIDPDAKFCPNCGAK 25 (26)
T ss_pred cCCcccccChhhCCC
Confidence 336667778888765
No 160
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.46 E-value=37 Score=37.41 Aligned_cols=22 Identities=32% Similarity=0.986 Sum_probs=17.2
Q ss_pred ccCCccccccCccccccCCCCceeecCCCC
Q 003929 33 ELSGQICQICGDEIEITDNGEPFVACNECA 62 (786)
Q Consensus 33 ~~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~ 62 (786)
..++..|.-||+- -|++|-.|+
T Consensus 226 ~~~~~~C~~CGg~--------rFlpC~~C~ 247 (281)
T KOG2824|consen 226 CEGGGVCESCGGA--------RFLPCSNCH 247 (281)
T ss_pred CCCCCcCCCcCCc--------ceEecCCCC
Confidence 5566899999854 789998884
No 161
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=27.45 E-value=24 Score=33.56 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=12.3
Q ss_pred HHHHhhCCCcCCCCcccccc
Q 003929 71 EYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 71 eyErkeG~q~CPqCkt~Ykr 90 (786)
+++..+-...||+|+.+-.+
T Consensus 79 ~~~~~~~~~~CP~Cgs~~~~ 98 (115)
T TIGR00100 79 EVSPEIDLYRCPKCHGIMLQ 98 (115)
T ss_pred EEecCCcCccCcCCcCCCcE
Confidence 34443435679999976533
No 162
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=27.43 E-value=34 Score=26.67 Aligned_cols=23 Identities=30% Similarity=0.881 Sum_probs=17.5
Q ss_pred ccccCccccccCCCCceeecCCCCC
Q 003929 39 CQICGDEIEITDNGEPFVACNECAF 63 (786)
Q Consensus 39 CqiCgd~Vg~~~~Ge~FvAC~eC~F 63 (786)
|.+||.......||- .-|.+|+.
T Consensus 11 C~~C~~~~~~~~dG~--~yC~~cG~ 33 (36)
T PF11781_consen 11 CPVCGSRWFYSDDGF--YYCDRCGH 33 (36)
T ss_pred CCCCCCeEeEccCCE--EEhhhCce
Confidence 999999988888886 44777764
No 163
>PF04641 Rtf2: Rtf2 RING-finger
Probab=27.01 E-value=52 Score=35.30 Aligned_cols=51 Identities=24% Similarity=0.544 Sum_probs=38.2
Q ss_pred cCCccccccCccccccCCCC-ceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 34 LSGQICQICGDEIEITDNGE-PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~~Ge-~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
...-+|.|++..+ +|- -||+=--||=-+|..|++-- + ....||.|.++|..
T Consensus 111 ~~~~~CPvt~~~~----~~~~~fv~l~~cG~V~s~~alke~-k-~~~~Cp~c~~~f~~ 162 (260)
T PF04641_consen 111 EGRFICPVTGKEF----NGKHKFVYLRPCGCVFSEKALKEL-K-KSKKCPVCGKPFTE 162 (260)
T ss_pred CceeECCCCCccc----CCceeEEEEcCCCCEeeHHHHHhh-c-ccccccccCCcccc
Confidence 3444999998776 454 58888888988888888444 4 45679999999963
No 164
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=26.87 E-value=59 Score=28.45 Aligned_cols=48 Identities=31% Similarity=0.703 Sum_probs=33.5
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCC-CcCCCCc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN-QACPQCK 85 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~-q~CPqCk 85 (786)
..+|..||-.|-..+.+-.| +|..|+=-+-.-|- --||-|+ -.||.|+
T Consensus 9 ~~~CtSCg~~i~p~e~~v~F-~CPnCGe~~I~Rc~-~CRk~g~~Y~Cp~CG 57 (61)
T COG2888 9 PPVCTSCGREIAPGETAVKF-PCPNCGEVEIYRCA-KCRKLGNPYRCPKCG 57 (61)
T ss_pred CceeccCCCEeccCCceeEe-eCCCCCceeeehhh-hHHHcCCceECCCcC
Confidence 35899999999887777665 69999933333332 2357676 5799886
No 165
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=26.23 E-value=52 Score=23.87 Aligned_cols=24 Identities=38% Similarity=1.049 Sum_probs=13.1
Q ss_pred ccccCccccccCCCCceeecCCCCC
Q 003929 39 CQICGDEIEITDNGEPFVACNECAF 63 (786)
Q Consensus 39 CqiCgd~Vg~~~~Ge~FvAC~eC~F 63 (786)
|..||-.|--.+.|-.| .|..|+|
T Consensus 1 C~sC~~~i~~r~~~v~f-~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPF-PCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceE-eCCCCCC
Confidence 55566665433444444 4777765
No 166
>PF12773 DZR: Double zinc ribbon
Probab=26.17 E-value=44 Score=26.68 Aligned_cols=12 Identities=25% Similarity=0.888 Sum_probs=7.7
Q ss_pred CccccccCcccc
Q 003929 36 GQICQICGDEIE 47 (786)
Q Consensus 36 ~~~CqiCgd~Vg 47 (786)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 446777776665
No 167
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.85 E-value=27 Score=30.59 Aligned_cols=17 Identities=47% Similarity=1.036 Sum_probs=14.5
Q ss_pred HhhCCCcCCCCcccccc
Q 003929 74 RREGNQACPQCKTRYKR 90 (786)
Q Consensus 74 rkeG~q~CPqCkt~Ykr 90 (786)
-++|.-.||=|.|+|+-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 46888999999999973
No 168
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.79 E-value=35 Score=34.06 Aligned_cols=43 Identities=26% Similarity=0.672 Sum_probs=35.2
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKT 86 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt 86 (786)
...|.||=+..--. ....|+--.|+.|-+.-.. +.-.||.|+.
T Consensus 13 ~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~ 55 (386)
T KOG2177|consen 13 ELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCRP 55 (386)
T ss_pred cccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccCC
Confidence 44899998885443 5667899999999988777 8899999993
No 169
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.70 E-value=33 Score=40.24 Aligned_cols=50 Identities=24% Similarity=0.620 Sum_probs=29.3
Q ss_pred ccCCCC-ceeecCCCCCC-cchhhh---HHHHhhCCCcCCCCccccccccCCCCC
Q 003929 48 ITDNGE-PFVACNECAFP-VCRPCY---EYERREGNQACPQCKTRYKRIKGSPRV 97 (786)
Q Consensus 48 ~~~~Ge-~FvAC~eC~Fp-VCRpCY---eyErkeG~q~CPqCkt~Ykr~kGsprV 97 (786)
++-.|- .++.|..|+.. .|.-|= .|-++++.-.|..|+..++-..-||.=
T Consensus 205 lnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C 259 (505)
T TIGR00595 205 LNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQC 259 (505)
T ss_pred EeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCC
Confidence 344555 46777777765 366663 333455555677777666655555543
No 170
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=25.61 E-value=40 Score=42.27 Aligned_cols=56 Identities=23% Similarity=0.444 Sum_probs=32.4
Q ss_pred CCccccccCccccc--c-CCCCceeecCCCCCCcchhhhHHHH-----------hhCCCcCCCCccccccccC
Q 003929 35 SGQICQICGDEIEI--T-DNGEPFVACNECAFPVCRPCYEYER-----------REGNQACPQCKTRYKRIKG 93 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~--~-~~Ge~FvAC~eC~FpVCRpCYeyEr-----------keG~q~CPqCkt~Ykr~kG 93 (786)
....|..||..-.+ . -.| .|++|. +||-|+-=....+ ......||.|+......+|
T Consensus 591 ~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~g 660 (860)
T PRK06319 591 TEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRHG 660 (860)
T ss_pred cCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEecC
Confidence 34689999864222 2 345 699994 5777742111111 1124689999877665444
No 171
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=25.52 E-value=42 Score=28.89 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=13.9
Q ss_pred hhCCCcCCCCccccc------cccCCCCCCCCCCCCCcc
Q 003929 75 REGNQACPQCKTRYK------RIKGSPRVDGDEEEDDTD 107 (786)
Q Consensus 75 keG~q~CPqCkt~Yk------r~kGsprV~Gd~ee~~~d 107 (786)
.+.|..-|=|-+|=| -..|+=||.|.+++++.+
T Consensus 15 ~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~~~~~~~ 53 (57)
T PF03884_consen 15 SPENPFRPFCSERCKLIDLGRWANEEYRIPGEPDDEDED 53 (57)
T ss_dssp SSSSS--SSSSHHHHHHHHS-SSSSS----SSS-SS-S-
T ss_pred cCCCCcCCcccHhhcccCHHHHhcCCcccCCCCCCcccc
Confidence 455566666666654 346677888876544433
No 172
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=25.44 E-value=46 Score=29.63 Aligned_cols=31 Identities=32% Similarity=0.861 Sum_probs=24.0
Q ss_pred cCCccccccCcc--cc-ccCCCCceeecCCCCCC
Q 003929 34 LSGQICQICGDE--IE-ITDNGEPFVACNECAFP 64 (786)
Q Consensus 34 ~~~~~CqiCgd~--Vg-~~~~Ge~FvAC~eC~Fp 64 (786)
..|-+|.-|+.- |. ..+||...+-|-+|+|-
T Consensus 6 IAGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 6 IAGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred ecCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 356789999854 44 45889999999999984
No 173
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=25.14 E-value=47 Score=25.48 Aligned_cols=31 Identities=23% Similarity=0.520 Sum_probs=23.0
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHH
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE 73 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyE 73 (786)
...|..|++.. +-.-|.+|..+||..|....
T Consensus 3 ~~~C~~H~~~~-------~~~~C~~C~~~~C~~C~~~~ 33 (42)
T PF00643_consen 3 EPKCPEHPEEP-------LSLFCEDCNEPLCSECTVSG 33 (42)
T ss_dssp SSB-SSTTTSB-------EEEEETTTTEEEEHHHHHTS
T ss_pred CccCccCCccc-------eEEEecCCCCccCccCCCCC
Confidence 45787777542 45779999999999999653
No 174
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=24.80 E-value=33 Score=29.89 Aligned_cols=28 Identities=32% Similarity=0.880 Sum_probs=20.9
Q ss_pred CccccccCccccccCCCCceeecCCCCCCc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPV 65 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpV 65 (786)
--||.-||.+-.+. .|+ .+-|.||+|.|
T Consensus 20 iYiCgdC~~en~lk-~~D-~irCReCG~RI 47 (62)
T KOG3507|consen 20 IYICGDCGQENTLK-RGD-VIRCRECGYRI 47 (62)
T ss_pred EEEecccccccccc-CCC-cEehhhcchHH
Confidence 44899999886664 344 46799999976
No 175
>TIGR02556 cas_TM1802 CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.
Probab=24.34 E-value=46 Score=39.82 Aligned_cols=41 Identities=29% Similarity=0.674 Sum_probs=24.4
Q ss_pred CccccccCccccccCCC----------Cceee--cCCCCCCcchhhhHHHHhhC
Q 003929 36 GQICQICGDEIEITDNG----------EPFVA--CNECAFPVCRPCYEYERREG 77 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~G----------e~FvA--C~eC~FpVCRpCYeyErkeG 77 (786)
+.+|.|||.+--++.+- .-|++ =.-=.||||+.||.+ ...|
T Consensus 170 ~g~C~iCg~~~~~v~~~~~fKfyT~DK~gf~sgk~~~knfpIC~eC~~~-l~~G 222 (555)
T TIGR02556 170 SGTCHLCGERSDITYDSFVYKFYTTDKPGFSSDKGFSKNFSICRDCYKD-VIYG 222 (555)
T ss_pred ceEEeccCCCCceeccceeeeeeecCCCcccCCccccccCchhHHHHHH-HHHH
Confidence 57999999973322221 11222 112279999999954 3455
No 176
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=24.18 E-value=39 Score=41.65 Aligned_cols=47 Identities=36% Similarity=0.744 Sum_probs=31.8
Q ss_pred cCcc-ccccCCCCc-eeecCCC--CCCcchhhhHHHHhhC--------CCcCCCCccccccccCC
Q 003929 42 CGDE-IEITDNGEP-FVACNEC--AFPVCRPCYEYERREG--------NQACPQCKTRYKRIKGS 94 (786)
Q Consensus 42 Cgd~-Vg~~~~Ge~-FvAC~eC--~FpVCRpCYeyErkeG--------~q~CPqCkt~Ykr~kGs 94 (786)
|||. +.++.++-+ -.-|.|| +|+ |..-.||- ---||+||.||- |-||
T Consensus 266 g~dqa~sltqsa~lRKFKCtECgKAFK-----fKHHLKEHlRIHSGEKPfeCpnCkKRFS-HSGS 324 (1007)
T KOG3623|consen 266 GGDQAISLTQSALLRKFKCTECGKAFK-----FKHHLKEHLRIHSGEKPFECPNCKKRFS-HSGS 324 (1007)
T ss_pred CCcccccccchhhhccccccccchhhh-----hHHHHHhhheeecCCCCcCCcccccccc-cCCc
Confidence 6777 888876554 6689999 565 44445542 235999999994 5454
No 177
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=24.10 E-value=36 Score=27.58 Aligned_cols=38 Identities=21% Similarity=0.489 Sum_probs=29.9
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhh
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERRE 76 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErke 76 (786)
.+.|.+|+...++... -.-|.-|+--+|..|..+....
T Consensus 2 ~~~C~~C~~~F~~~~r---k~~Cr~Cg~~~C~~C~~~~~~~ 39 (57)
T cd00065 2 ASSCMGCGKPFTLTRR---RHHCRNCGRIFCSKCSSNRIPL 39 (57)
T ss_pred cCcCcccCccccCCcc---ccccCcCcCCcChHHcCCeeec
Confidence 4689999999888443 2669999999999999877553
No 178
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=24.03 E-value=32 Score=31.99 Aligned_cols=40 Identities=25% Similarity=0.620 Sum_probs=24.7
Q ss_pred ccccCcccccc-CCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccc
Q 003929 39 CQICGDEIEIT-DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (786)
Q Consensus 39 CqiCgd~Vg~~-~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Y 88 (786)
|.+||...+.. ..-+.|.-+ ...+-|--|++ .||+|++.|
T Consensus 1 C~~C~~~~~~~~~~~~~~~~~-G~~~~v~~~~~---------~C~~CGe~~ 41 (127)
T TIGR03830 1 CPICGSGELVRDVKDEPYTYK-GESITIGVPGW---------YCPACGEEL 41 (127)
T ss_pred CCCCCCccceeeeecceEEEc-CEEEEEeeeee---------ECCCCCCEE
Confidence 88999654433 334445455 35555544554 699999988
No 179
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=23.82 E-value=33 Score=33.20 Aligned_cols=52 Identities=25% Similarity=0.644 Sum_probs=32.9
Q ss_pred cCCccccccCcc--ccccCCC-CceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccc
Q 003929 34 LSGQICQICGDE--IEITDNG-EPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 34 ~~~~~CqiCgd~--Vg~~~~G-e~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
..+..|.-||.. |....++ -.|..| +.||.||-=.- .+-..+.||+|.-+..
T Consensus 58 ~~~~~Cp~C~~~~~~~k~~~~~~~f~~~--~~~Pkc~~~~~--~~~~~~~cp~c~~~~~ 112 (140)
T COG0551 58 KTGVKCPKCGKGLLVLKKGRFGKNFLGC--SNYPKCRFTEK--PKPKEKKCPKCGSRKL 112 (140)
T ss_pred cCceeCCCCCCCceEEEeccCCceEEee--cCCCcCceeec--CCcccccCCcCCCcee
Confidence 345688889943 3333332 279999 79999985332 2333345999997443
No 180
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=23.00 E-value=40 Score=33.62 Aligned_cols=43 Identities=35% Similarity=0.858 Sum_probs=25.6
Q ss_pred CCccccccCccccccCCCCceeecCCCCCCcchhhhHHH-HhhCCCcCCCCcc
Q 003929 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKT 86 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyE-rkeG~q~CPqCkt 86 (786)
.+..|..||+ .-||+|.+|.= -||--.+.. ...+-.-||.|++
T Consensus 98 ~~~~C~~Cgg--------~rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCGG--------ARFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCCC--------cCeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 4557999984 47999988852 222211110 1233478999975
No 181
>PRK08359 transcription factor; Validated
Probab=22.93 E-value=28 Score=35.89 Aligned_cols=34 Identities=38% Similarity=0.908 Sum_probs=19.3
Q ss_pred ccccccCccccccCCCCc-eeecCCCCCCcchhhh-HHHH
Q 003929 37 QICQICGDEIEITDNGEP-FVACNECAFPVCRPCY-EYER 74 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~-FvAC~eC~FpVCRpCY-eyEr 74 (786)
-.|.|||.+|- |.. -|-=.-=-.-||..|| .|-.
T Consensus 7 ~~CEiCG~~i~----g~~~~v~ieGael~VC~~Ca~k~G~ 42 (176)
T PRK08359 7 RYCEICGAEIR----GPGHRIRIEGAELLVCDRCYEKYGR 42 (176)
T ss_pred ceeecCCCccC----CCCeEEEEcCeEEehHHHHHHHhCC
Confidence 35999999973 331 1111111245778888 6644
No 182
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=22.81 E-value=1.6e+02 Score=33.59 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=35.8
Q ss_pred hhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc------------cCC-------CCcceEEEecCcccc
Q 003929 553 GAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM------------DPT-------SGKKICYVQFPQRFD 612 (786)
Q Consensus 553 GALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl------------Dp~-------~g~~vafVQtPQ~F~ 612 (786)
..+-++|+. + +.+++++.|||+=.-+++.+++.+-.+. |+. ....+-.|||||-|.
T Consensus 85 ~SV~~gL~~---l-~~d~VLVhdadrPfv~~e~I~~li~~~~~~~a~i~~~pv~Dtik~~~~tldR~~l~~~QTPQ~f~ 159 (378)
T PRK09382 85 ESVRNALEA---L-DSEYVLIHDAARPFVPKELIDRLIEALDKADCVLPALPVADTLKRANETVDREGLKLIQTPQLSR 159 (378)
T ss_pred HHHHHHHHh---c-CCCeEEEeeccccCCCHHHHHHHHHHhhcCCeEEEEEEeccCcEEeeeEcCcccEEEEECCCCCC
Confidence 345555553 1 3489999999985457888776654332 110 123667789999994
No 183
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=22.73 E-value=38 Score=29.81 Aligned_cols=23 Identities=22% Similarity=0.592 Sum_probs=17.0
Q ss_pred ceeecCCCCCCcchhhhHHHHhhCCCcCCCCccc
Q 003929 54 PFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (786)
Q Consensus 54 ~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~ 87 (786)
.|.||.+|.+-+ ++ +.||-|+..
T Consensus 4 ~~~AC~~C~~i~----------~~-~~Cp~Cgs~ 26 (64)
T PRK06393 4 QYRACKKCKRLT----------PE-KTCPVHGDE 26 (64)
T ss_pred hhhhHhhCCccc----------CC-CcCCCCCCC
Confidence 467888888776 23 599999974
No 184
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar
Probab=22.58 E-value=56 Score=27.12 Aligned_cols=26 Identities=31% Similarity=0.855 Sum_probs=17.0
Q ss_pred cccccCcc-ccccC-CCC-----ceeecCCCCC
Q 003929 38 ICQICGDE-IEITD-NGE-----PFVACNECAF 63 (786)
Q Consensus 38 ~CqiCgd~-Vg~~~-~Ge-----~FvAC~eC~F 63 (786)
-|.-||.. |.+.. .+. .+|.|++|+.
T Consensus 5 PCPFCG~~~~~~~~~~~~~~~~~~~V~C~~Cga 37 (61)
T PF14354_consen 5 PCPFCGSADVLIRQDEGFDYGMYYYVECTDCGA 37 (61)
T ss_pred CCCCCCCcceEeecccCCCCCCEEEEEcCCCCC
Confidence 58999855 33332 222 7889998876
No 185
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=22.55 E-value=1.1e+02 Score=25.18 Aligned_cols=45 Identities=36% Similarity=0.710 Sum_probs=28.4
Q ss_pred cccccCccccccCCCCceeecCCCCC---CcchhhhHHHHh-hCCCcCCCCc
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAF---PVCRPCYEYERR-EGNQACPQCK 85 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~F---pVCRpCYeyErk-eG~q~CPqCk 85 (786)
+|.||-+ +-+++..++.+| .|.- -|=+.|.+.=+. .++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5899987 334444557778 4542 244567765544 4467899996
No 186
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=22.25 E-value=28 Score=34.11 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=8.2
Q ss_pred CCCcCCCCccc
Q 003929 77 GNQACPQCKTR 87 (786)
Q Consensus 77 G~q~CPqCkt~ 87 (786)
..-.||+|+.+
T Consensus 106 ~~~~CP~Cgs~ 116 (135)
T PRK03824 106 AFLKCPKCGSR 116 (135)
T ss_pred cCcCCcCCCCC
Confidence 34569999976
No 187
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=22.22 E-value=58 Score=24.02 Aligned_cols=28 Identities=36% Similarity=0.954 Sum_probs=21.0
Q ss_pred cccccCccccccCCCCceeecCCCCCCcchhh
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPC 69 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpC 69 (786)
.|.+|+.++ +|..|--|.+|.|-+..-|
T Consensus 2 ~C~~C~~~~----~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKI----DGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCc----CCCEeEEeCCCCCeEcCcc
Confidence 589998774 3433899999999877655
No 188
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=21.96 E-value=37 Score=26.26 Aligned_cols=11 Identities=45% Similarity=1.404 Sum_probs=9.5
Q ss_pred cCCCCcccccc
Q 003929 80 ACPQCKTRYKR 90 (786)
Q Consensus 80 ~CPqCkt~Ykr 90 (786)
.||.|++.|+-
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 59999999964
No 189
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.69 E-value=1.2e+02 Score=36.83 Aligned_cols=48 Identities=17% Similarity=0.069 Sum_probs=40.4
Q ss_pred CCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCch
Q 003929 363 SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 413 (786)
Q Consensus 363 ~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~ 413 (786)
..||++-|+|+- ++|...+..+||-|++..-=|.---.+.|.||+...
T Consensus 139 ~~Lp~~Svii~f---~nE~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 139 DKLPTTSVIIIF---HNEAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred cccCCCceEEEE---ecCCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 459999999999 699999999999999887766545578888997665
No 190
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=21.67 E-value=1.6e+02 Score=37.20 Aligned_cols=40 Identities=15% Similarity=0.071 Sum_probs=22.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhh
Q 003929 314 AYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSL 354 (786)
Q Consensus 314 a~~lWl~~~v~Ei~faf~wiL~q~~kw~Pv~R~t~~drL~~ 354 (786)
..|+|++++++ +..++.|++.-+.+|++-.|..-..||..
T Consensus 44 p~~~~~~~l~~-~~~~~~~~l~~~~rfr~P~~~ea~~Rle~ 83 (851)
T TIGR02302 44 PFWLHIAGLVL-FAALALVALIPAIRFRWPSRDEALARLER 83 (851)
T ss_pred HHHHHHHHHHH-HHHHHHHHHhhhhhcCCCCHHHHHHHHHH
Confidence 45778776666 44444444445556666566655555543
No 191
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=21.55 E-value=27 Score=29.75 Aligned_cols=16 Identities=31% Similarity=0.866 Sum_probs=13.4
Q ss_pred hhCCCcCCCCcccccc
Q 003929 75 REGNQACPQCKTRYKR 90 (786)
Q Consensus 75 keG~q~CPqCkt~Ykr 90 (786)
++.--+||.|+++|.|
T Consensus 18 ~dDiVvCp~CgapyHR 33 (54)
T PF14446_consen 18 GDDIVVCPECGAPYHR 33 (54)
T ss_pred CCCEEECCCCCCcccH
Confidence 4556789999999977
No 192
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=21.23 E-value=47 Score=43.16 Aligned_cols=48 Identities=25% Similarity=0.650 Sum_probs=30.2
Q ss_pred ccccccCccccccCCCCceeecCCCCCCc-----chhhhHHH--HhhCCCcCCCCccccccc
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAFPV-----CRPCYEYE--RREGNQACPQCKTRYKRI 91 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpV-----CRpCYeyE--rkeG~q~CPqCkt~Ykr~ 91 (786)
..|.-||..+-- .-|.+|+-+. |..|=--- -..+...||.|+++-...
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 478888886421 2688888664 77775311 112355799999877543
No 193
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=20.98 E-value=46 Score=38.36 Aligned_cols=33 Identities=30% Similarity=0.662 Sum_probs=22.8
Q ss_pred eecCCCCCCcchhhhHHHHhhC-CCcCCCCcccccccc
Q 003929 56 VACNECAFPVCRPCYEYERREG-NQACPQCKTRYKRIK 92 (786)
Q Consensus 56 vAC~eC~FpVCRpCYeyErkeG-~q~CPqCkt~Ykr~k 92 (786)
++|++|+.-+..|= .+.| ...||+|+++-.|++
T Consensus 11 ~~C~~Cd~l~~~~~----l~~g~~a~CpRCg~~L~~~~ 44 (419)
T PRK15103 11 ILCPQCDMLVALPR----LEHGQKAACPRCGTTLTVRW 44 (419)
T ss_pred ccCCCCCceeecCC----CCCCCeeECCCCCCCCcCCC
Confidence 78999988755431 1233 356999999987663
No 194
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=20.62 E-value=78 Score=39.05 Aligned_cols=60 Identities=33% Similarity=0.817 Sum_probs=41.7
Q ss_pred cCCccccccCccccccCCCC---ceeecCCCC--------------------CCcchhhhH-HH----Hh--hCCCcCCC
Q 003929 34 LSGQICQICGDEIEITDNGE---PFVACNECA--------------------FPVCRPCYE-YE----RR--EGNQACPQ 83 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~~Ge---~FvAC~eC~--------------------FpVCRpCYe-yE----rk--eG~q~CPq 83 (786)
....+|.-|=.++---.+=. +|..|..|| ||.|-.|-. |+ |+ ----+||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 34558999998875443332 699999994 999999974 33 33 22369999
Q ss_pred Ccccc--ccccC
Q 003929 84 CKTRY--KRIKG 93 (786)
Q Consensus 84 Ckt~Y--kr~kG 93 (786)
|+-.| ++++|
T Consensus 179 CGP~~~l~~~~g 190 (750)
T COG0068 179 CGPHLFLVNHDG 190 (750)
T ss_pred cCCCeEEEcCCC
Confidence 99755 34443
No 195
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=20.62 E-value=41 Score=25.99 Aligned_cols=11 Identities=36% Similarity=1.310 Sum_probs=9.3
Q ss_pred cCCCCcccccc
Q 003929 80 ACPQCKTRYKR 90 (786)
Q Consensus 80 ~CPqCkt~Ykr 90 (786)
.||+|++.|.-
T Consensus 4 ~Cp~C~~~y~i 14 (36)
T PF13717_consen 4 TCPNCQAKYEI 14 (36)
T ss_pred ECCCCCCEEeC
Confidence 59999999953
No 196
>PRK05582 DNA topoisomerase I; Validated
Probab=20.48 E-value=62 Score=39.19 Aligned_cols=51 Identities=33% Similarity=0.722 Sum_probs=30.3
Q ss_pred CccccccCccccc--cCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEI--TDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~--~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
...|..||..+-. ...| .|..|. +||-|+-.. ...++.++.||.|+.....
T Consensus 571 ~~~CP~Cg~~l~~~~~k~g-kf~~Cs--~~~~C~~~~-~~~~~~~~~CP~C~~~l~l 623 (650)
T PRK05582 571 GEDCPKCGSPMVIKMGRYG-KFIACS--NFPDCRNTK-PIVKEIGVKCPKCGGQIVE 623 (650)
T ss_pred CCCCCCCCCEeEEEecCCC-ceeecC--CccccccCC-CcccccCCCCCCCCCceEE
Confidence 3579999876542 2244 699996 344444221 1113446789999876543
No 197
>PRK07726 DNA topoisomerase III; Provisional
Probab=20.14 E-value=65 Score=39.15 Aligned_cols=46 Identities=26% Similarity=0.619 Sum_probs=29.9
Q ss_pred CccccccCccccc--cCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcc
Q 003929 36 GQICQICGDEIEI--TDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKT 86 (786)
Q Consensus 36 ~~~CqiCgd~Vg~--~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt 86 (786)
...|..||..+-. ..+| -|..|.. |+.|+.+. ..++.++.||-|+.
T Consensus 610 ~~~CP~C~~~~~~~~~~~~-~f~~Cs~--~~~~~~~~--~~~~~~~~~~~~~~ 657 (658)
T PRK07726 610 GPKCPDCGKPMLKVKGKNG-KMLVCQD--RECGKRKN--VSKKTNARCPNCKK 657 (658)
T ss_pred cccccccCccceeecccCC-eeEecCC--Cccccccc--cccccCCCCCccCC
Confidence 3579999987542 2345 5899987 77665422 12344678999975
Done!