Query 003929
Match_columns 786
No_of_seqs 340 out of 836
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 08:35:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003929.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003929hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1weo_A Cellulose synthase, cat 100.0 4.2E-45 1.4E-49 321.7 8.1 84 28-111 8-91 (93)
2 4hg6_A Cellulose synthase subu 99.9 4E-26 1.4E-30 266.2 21.7 257 288-661 65-338 (802)
3 2z86_A Chondroitin synthase; G 99.1 3.3E-10 1.1E-14 126.8 12.1 127 363-614 90-217 (625)
4 1qg8_A Protein (spore coat pol 98.9 1.4E-09 4.8E-14 106.6 7.1 161 366-655 1-168 (255)
5 1xhb_A Polypeptide N-acetylgal 98.8 9.7E-09 3.3E-13 111.4 11.1 114 362-594 25-140 (472)
6 2ffu_A Ppgalnact-2, polypeptid 98.8 5.1E-09 1.7E-13 114.9 8.3 113 362-596 62-174 (501)
7 2d7i_A Polypeptide N-acetylgal 98.8 5.8E-09 2E-13 117.3 8.9 115 363-595 109-223 (570)
8 3bcv_A Putative glycosyltransf 98.8 1.2E-08 4.2E-13 98.7 9.4 110 364-596 3-112 (240)
9 2z86_A Chondroitin synthase; G 98.6 6.8E-08 2.3E-12 108.2 9.0 166 363-660 372-541 (625)
10 3ckj_A Putative uncharacterize 98.4 1.8E-07 6E-12 97.7 5.3 52 550-609 118-170 (329)
11 3l7i_A Teichoic acid biosynthe 98.1 2.8E-07 9.6E-12 106.1 0.0 111 365-596 1-111 (729)
12 3f1y_A Mannosyl-3-phosphoglyce 97.9 1.4E-05 4.6E-10 86.8 6.6 50 550-607 166-216 (387)
13 4fix_A UDP-galactofuranosyl tr 97.8 1.9E-05 6.5E-10 91.2 7.7 64 534-607 241-304 (657)
14 1e4u_A Transcriptional repress 96.4 0.0042 1.4E-07 53.4 5.9 52 36-90 11-62 (78)
15 1fo8_A Alpha-1,3-mannosyl-glyc 95.1 0.023 7.9E-07 61.2 6.2 44 365-413 1-44 (343)
16 2bo4_A Mannosylglycerate synth 93.5 0.45 1.5E-05 52.0 12.0 46 549-594 74-119 (397)
17 2nxv_A ATP synthase subunits r 93.1 0.19 6.6E-06 50.1 7.7 39 552-595 63-101 (249)
18 1vyx_A ORF K3, K3RING; zinc-bi 88.8 0.38 1.3E-05 39.4 4.1 50 35-89 5-58 (60)
19 2ea6_A Ring finger protein 4; 88.6 0.45 1.5E-05 38.0 4.3 54 35-90 14-68 (69)
20 2d8s_A Cellular modulator of i 87.5 0.67 2.3E-05 39.9 5.0 55 33-90 12-70 (80)
21 3ng2_A RNF4, snurf, ring finge 86.9 0.33 1.1E-05 39.2 2.6 55 34-90 8-63 (71)
22 1t1h_A Gspef-atpub14, armadill 86.2 0.49 1.7E-05 39.1 3.3 47 36-89 8-54 (78)
23 2ckl_B Ubiquitin ligase protei 85.6 0.54 1.9E-05 44.5 3.8 48 37-90 55-102 (165)
24 1g25_A CDK-activating kinase a 85.5 0.73 2.5E-05 36.9 3.9 53 36-90 3-55 (65)
25 2xeu_A Ring finger protein 4; 85.3 0.35 1.2E-05 38.0 1.9 53 36-90 3-56 (64)
26 2ect_A Ring finger protein 126 85.0 2.1 7.3E-05 35.2 6.6 53 34-91 13-65 (78)
27 2ecy_A TNF receptor-associated 84.2 0.7 2.4E-05 37.1 3.3 48 36-90 15-62 (66)
28 2ysl_A Tripartite motif-contai 83.2 0.86 2.9E-05 37.0 3.5 48 36-90 20-69 (73)
29 2fy7_A Beta-1,4-galactosyltran 83.2 1.2 4E-05 46.5 5.3 39 365-409 64-105 (287)
30 2ecm_A Ring finger and CHY zin 83.0 1.3 4.3E-05 34.0 4.1 50 35-88 4-53 (55)
31 1iym_A EL5; ring-H2 finger, ub 82.6 1.4 4.9E-05 33.7 4.3 49 36-88 5-53 (55)
32 3fl2_A E3 ubiquitin-protein li 82.2 0.98 3.4E-05 40.8 3.7 47 37-90 53-99 (124)
33 2csz_A Synaptotagmin-like prot 81.8 0.67 2.3E-05 40.4 2.3 62 10-75 1-62 (76)
34 1v87_A Deltex protein 2; ring- 81.5 1.5 5E-05 38.8 4.5 59 35-93 24-97 (114)
35 2zu9_A Mannosyl-3-phosphoglyce 80.8 8.9 0.0003 42.3 11.3 36 550-588 144-179 (394)
36 2ct2_A Tripartite motif protei 78.9 2.1 7.3E-05 35.7 4.5 52 36-90 15-68 (88)
37 2c2l_A CHIP, carboxy terminus 78.8 1.2 4.3E-05 44.4 3.6 48 35-89 207-254 (281)
38 2f42_A STIP1 homology and U-bo 77.4 1.5 5.2E-05 43.4 3.6 47 36-89 106-152 (179)
39 2ecv_A Tripartite motif-contai 77.3 2.3 7.8E-05 35.0 4.2 48 36-90 19-71 (85)
40 1chc_A Equine herpes virus-1 r 77.1 2.9 0.0001 33.4 4.6 49 36-91 5-53 (68)
41 2ecw_A Tripartite motif-contai 76.8 2.3 7.8E-05 35.0 4.1 48 36-90 19-71 (85)
42 3lrq_A E3 ubiquitin-protein li 76.7 2 6.9E-05 37.6 3.9 47 37-89 23-69 (100)
43 2kiz_A E3 ubiquitin-protein li 76.1 3 0.0001 33.4 4.5 52 35-91 13-64 (69)
44 2zet_C Melanophilin; complex, 75.8 0.52 1.8E-05 45.6 -0.2 51 35-87 67-117 (153)
45 3l11_A E3 ubiquitin-protein li 73.4 1.2 4.2E-05 39.5 1.6 48 36-90 15-62 (115)
46 3hct_A TNF receptor-associated 71.4 2.6 8.8E-05 37.8 3.3 47 37-90 19-65 (118)
47 2djb_A Polycomb group ring fin 71.4 5.1 0.00017 32.6 4.8 49 36-91 15-63 (72)
48 2y43_A E3 ubiquitin-protein li 71.1 3.4 0.00012 35.7 3.9 48 36-90 22-69 (99)
49 2wvl_A Mannosyl-3-phosphoglyce 70.0 2 6.9E-05 47.2 2.6 32 549-581 142-173 (391)
50 2gvi_A Conserved hypothetical 69.4 1.2 4.2E-05 44.5 0.8 29 34-72 170-202 (204)
51 1zbd_B Rabphilin-3A; G protein 69.4 2.1 7.2E-05 40.5 2.3 38 33-73 52-90 (134)
52 1x4j_A Ring finger protein 38; 69.2 2.7 9.4E-05 34.4 2.7 52 35-91 22-73 (75)
53 1z6u_A NP95-like ring finger p 68.4 3.7 0.00013 38.9 3.8 47 37-90 79-125 (150)
54 2kr4_A Ubiquitin conjugation f 67.0 3.6 0.00012 35.3 3.1 46 36-89 14-59 (85)
55 2kre_A Ubiquitin conjugation f 66.9 3.4 0.00012 36.7 3.0 46 36-89 29-74 (100)
56 2l0b_A E3 ubiquitin-protein li 66.4 3.8 0.00013 35.2 3.2 49 35-88 39-87 (91)
57 2ecl_A Ring-box protein 2; RNF 65.1 6 0.00021 33.3 4.1 55 35-90 14-76 (81)
58 2yur_A Retinoblastoma-binding 65.0 8.4 0.00029 31.6 4.9 49 36-90 15-64 (74)
59 3vk6_A E3 ubiquitin-protein li 64.5 3.8 0.00013 37.5 2.8 48 38-91 3-50 (101)
60 2csy_A Zinc finger protein 183 64.3 9.6 0.00033 31.6 5.2 46 36-89 15-60 (81)
61 2ep4_A Ring finger protein 24; 64.2 8.2 0.00028 31.3 4.6 50 36-90 15-64 (74)
62 2ckl_A Polycomb group ring fin 64.2 5 0.00017 35.2 3.6 48 36-90 15-62 (108)
63 1jm7_A BRCA1, breast cancer ty 63.5 5.6 0.00019 34.7 3.7 47 37-90 22-70 (112)
64 3hcs_A TNF receptor-associated 63.2 4.3 0.00015 38.4 3.2 47 37-90 19-65 (170)
65 1rmd_A RAG1; V(D)J recombinati 63.2 5.9 0.0002 35.1 3.9 48 36-90 23-70 (116)
66 4ayc_A E3 ubiquitin-protein li 62.4 5.1 0.00018 36.9 3.4 45 38-90 55-99 (138)
67 2d8t_A Dactylidin, ring finger 62.3 6.1 0.00021 32.1 3.5 49 34-90 13-61 (71)
68 2ysj_A Tripartite motif-contai 62.1 7.3 0.00025 30.7 3.9 42 36-84 20-63 (63)
69 1jm7_B BARD1, BRCA1-associated 61.4 5.2 0.00018 35.8 3.2 45 36-89 22-66 (117)
70 3d00_A Tungsten formylmethanof 60.5 4.2 0.00014 40.5 2.6 26 34-71 161-186 (191)
71 1wgm_A Ubiquitin conjugation f 60.2 5.8 0.0002 35.1 3.3 46 36-89 22-68 (98)
72 3ztg_A E3 ubiquitin-protein li 60.1 5.5 0.00019 33.7 3.0 48 36-89 13-61 (92)
73 2ecn_A Ring finger protein 141 58.8 5.8 0.0002 31.8 2.8 47 36-91 15-61 (70)
74 2egp_A Tripartite motif-contai 58.4 3.1 0.0001 34.1 1.0 48 36-90 12-65 (79)
75 2ct0_A Non-SMC element 1 homol 56.5 5.5 0.00019 34.1 2.3 47 37-89 16-63 (74)
76 4ap4_A E3 ubiquitin ligase RNF 56.0 6.4 0.00022 34.8 2.8 54 35-90 71-125 (133)
77 3ky9_A Proto-oncogene VAV; cal 54.2 6.1 0.00021 44.7 2.9 36 34-72 527-563 (587)
78 3h0g_L DNA-directed RNA polyme 53.8 8 0.00027 32.6 2.8 30 34-65 19-48 (63)
79 3dpl_R Ring-box protein 1; ubi 51.8 13 0.00043 33.5 4.1 54 35-89 36-100 (106)
80 4ap4_A E3 ubiquitin ligase RNF 51.4 6.3 0.00022 34.9 2.0 54 35-90 6-60 (133)
81 2ea5_A Cell growth regulator w 50.2 14 0.00047 30.4 3.7 45 34-90 13-58 (68)
82 2k16_A Transcription initiatio 49.6 6.4 0.00022 33.0 1.6 53 35-91 17-72 (75)
83 3nw0_A Non-structural maintena 49.4 11 0.00038 38.5 3.7 48 36-89 180-228 (238)
84 2vrw_B P95VAV, VAV1, proto-onc 49.0 8.8 0.0003 41.0 3.0 35 34-71 355-390 (406)
85 2y1n_A E3 ubiquitin-protein li 48.6 11 0.00039 41.4 3.8 48 37-91 333-380 (389)
86 3vth_A Hydrogenase maturation 48.4 8.3 0.00028 45.8 2.9 58 34-91 109-196 (761)
87 1bor_A Transcription factor PM 47.1 14 0.00049 28.8 3.2 45 36-91 6-50 (56)
88 1xwh_A Autoimmune regulator; P 46.8 7.3 0.00025 32.2 1.5 50 31-87 3-55 (66)
89 2ku3_A Bromodomain-containing 46.1 6.9 0.00023 33.2 1.3 56 30-87 10-66 (71)
90 2js4_A UPF0434 protein BB2007; 45.7 2.2 7.7E-05 36.3 -1.8 44 55-103 8-51 (70)
91 3knv_A TNF receptor-associated 45.0 7.4 0.00025 36.5 1.5 45 37-88 32-76 (141)
92 2vje_A E3 ubiquitin-protein li 44.2 10 0.00034 30.7 2.0 48 34-89 6-56 (64)
93 2l43_A N-teminal domain from h 43.6 8.1 0.00028 33.9 1.4 54 33-88 22-76 (88)
94 2ecg_A Baculoviral IAP repeat- 43.3 14 0.00047 30.5 2.7 43 36-90 25-68 (75)
95 1m3v_A FLIN4, fusion of the LI 42.1 18 0.00062 32.6 3.5 24 64-89 56-80 (122)
96 2xjy_A Rhombotin-2; oncoprotei 41.8 15 0.00052 33.0 3.0 46 37-88 30-76 (131)
97 3v43_A Histone acetyltransfera 40.9 21 0.00073 32.2 3.8 51 36-86 5-63 (112)
98 2ecj_A Tripartite motif-contai 40.5 39 0.0013 25.6 4.7 42 36-84 15-58 (58)
99 1tot_A CREB-binding protein; z 40.2 9.7 0.00033 30.5 1.2 31 36-72 6-37 (52)
100 2hf1_A Tetraacyldisaccharide-1 40.0 2.5 8.7E-05 35.8 -2.3 43 55-102 8-50 (68)
101 2kdx_A HYPA, hydrogenase/ureas 38.7 4.9 0.00017 36.7 -0.8 31 54-91 72-103 (119)
102 2l5u_A Chromodomain-helicase-D 38.0 22 0.00076 28.9 3.1 47 33-86 8-57 (61)
103 2co8_A NEDD9 interacting prote 37.8 22 0.00075 29.8 3.2 62 31-95 10-79 (82)
104 2jny_A Uncharacterized BCR; st 36.0 4.8 0.00017 34.1 -1.2 39 64-102 14-52 (67)
105 1twf_L ABC10-alpha, DNA-direct 35.7 15 0.00052 31.3 1.8 25 37-63 29-53 (70)
106 4g9i_A Hydrogenase maturation 35.2 11 0.00038 44.7 1.2 58 34-91 104-191 (772)
107 3a43_A HYPD, hydrogenase nicke 34.6 7.4 0.00025 36.8 -0.3 12 78-89 107-118 (139)
108 2jr6_A UPF0434 protein NMA0874 34.5 4.6 0.00016 34.3 -1.6 34 70-103 18-51 (68)
109 2dj7_A Actin-binding LIM prote 34.0 21 0.00071 30.0 2.4 52 29-83 8-67 (80)
110 1wim_A KIAA0161 protein; ring 33.4 24 0.00082 30.2 2.7 49 36-88 5-62 (94)
111 3ttc_A HYPF, transcriptional r 33.0 14 0.00049 43.1 1.6 54 35-88 16-99 (657)
112 2yu4_A E3 SUMO-protein ligase 32.6 32 0.0011 29.6 3.5 46 36-87 7-59 (94)
113 1rut_X Flinc4, fusion protein 32.3 26 0.0009 33.8 3.1 24 63-88 55-79 (188)
114 2cup_A Skeletal muscle LIM-pro 32.1 23 0.00079 30.3 2.4 23 63-88 54-76 (101)
115 2gai_A DNA topoisomerase I; zi 31.5 10 0.00034 44.0 0.0 45 38-87 574-621 (633)
116 2orw_A Thymidine kinase; TMTK, 31.4 17 0.00058 34.9 1.6 35 37-71 138-178 (184)
117 4ic3_A E3 ubiquitin-protein li 31.3 22 0.00076 29.3 2.1 42 37-90 25-67 (74)
118 1w4r_A Thymidine kinase; type 31.0 13 0.00045 37.1 0.8 35 37-71 152-191 (195)
119 3t6p_A Baculoviral IAP repeat- 30.4 20 0.00069 38.6 2.1 43 36-90 295-338 (345)
120 3htk_C E3 SUMO-protein ligase 30.4 25 0.00084 37.0 2.7 49 35-89 180-231 (267)
121 1we9_A PHD finger family prote 30.2 20 0.00068 29.0 1.6 53 35-90 5-61 (64)
122 2pk7_A Uncharacterized protein 29.9 3.9 0.00013 34.8 -2.8 33 71-103 19-51 (69)
123 2cor_A Pinch protein; LIM doma 29.8 33 0.0011 28.5 2.9 37 32-68 11-54 (79)
124 1mm2_A MI2-beta; PHD, zinc fin 29.5 30 0.001 28.1 2.5 46 35-87 8-56 (61)
125 1m4f_A Hepcidin; strand-loop-s 29.3 4.7 0.00016 28.6 -1.9 23 62-86 3-25 (26)
126 2lri_C Autoimmune regulator; Z 28.8 36 0.0012 28.3 2.9 46 34-86 10-58 (66)
127 2vje_B MDM4 protein; proto-onc 28.7 28 0.00094 28.0 2.2 47 36-90 7-56 (63)
128 3lqh_A Histone-lysine N-methyl 28.5 29 0.001 34.3 2.8 54 35-88 1-64 (183)
129 1x61_A Thyroid receptor intera 28.5 50 0.0017 26.4 3.8 9 63-71 54-62 (72)
130 1dl6_A Transcription factor II 28.3 47 0.0016 27.0 3.5 7 38-44 13-19 (58)
131 2d8y_A Eplin protein; LIM doma 28.2 56 0.0019 27.7 4.1 36 29-64 8-51 (91)
132 4a0k_B E3 ubiquitin-protein li 27.0 15 0.00052 33.8 0.4 54 35-89 47-111 (117)
133 1wge_A Hypothetical protein 26 27.0 22 0.00075 31.3 1.4 28 37-65 31-62 (83)
134 2xqn_T Testin, TESS; metal-bin 26.9 32 0.0011 30.7 2.5 42 38-88 32-73 (126)
135 1f62_A Transcription factor WS 26.7 31 0.0011 26.6 2.1 45 38-86 2-49 (51)
136 2jr7_A DPH3 homolog; DESR1, CS 25.6 17 0.00058 32.5 0.4 28 37-65 24-55 (89)
137 1yop_A KTI11P; zinc finger, me 25.3 19 0.00066 31.7 0.7 28 37-65 24-55 (83)
138 2ksl_A U1-agatoxin-TA1A; insec 24.8 2.8 9.5E-05 33.0 -4.2 25 36-60 20-48 (51)
139 3q80_A 2-C-methyl-D-erythritol 24.0 49 0.0017 33.0 3.5 28 568-595 100-127 (231)
140 2rgt_A Fusion of LIM/homeobox 23.7 63 0.0021 30.5 4.0 24 62-88 52-75 (169)
141 2gmg_A Hypothetical protein PF 23.6 24 0.00081 32.5 1.0 26 56-87 68-93 (105)
142 1a7i_A QCRP2 (LIM1); LIM domai 23.6 30 0.001 28.6 1.6 12 36-47 7-18 (81)
143 1x63_A Skeletal muscle LIM-pro 23.3 54 0.0018 26.9 3.1 13 35-47 14-26 (82)
144 1x4l_A Skeletal muscle LIM-pro 23.1 52 0.0018 26.4 2.9 12 36-47 5-16 (72)
145 2yho_A E3 ubiquitin-protein li 22.6 48 0.0017 27.8 2.7 42 37-90 19-61 (79)
146 2puy_A PHD finger protein 21A; 22.3 20 0.00069 28.8 0.2 49 35-90 4-55 (60)
147 2e72_A POGO transposable eleme 22.3 29 0.001 28.0 1.1 15 77-91 11-25 (49)
148 2ysm_A Myeloid/lymphoid or mix 22.2 44 0.0015 29.7 2.5 49 34-86 5-56 (111)
149 2c0n_A A197; thermophil protei 21.9 72 0.0025 32.4 4.2 79 566-661 52-134 (203)
150 3e2i_A Thymidine kinase; Zn-bi 21.5 8.1 0.00028 39.4 -2.8 36 37-72 163-209 (219)
151 1g47_A Pinch protein; LIM doma 21.4 35 0.0012 27.6 1.6 31 34-64 9-48 (77)
152 2egq_A FHL1 protein; LIM domai 20.6 48 0.0016 26.9 2.2 12 36-47 15-26 (77)
153 2l9u_A Receptor tyrosine-prote 20.6 62 0.0021 24.6 2.5 17 292-308 17-33 (40)
154 2lcq_A Putative toxin VAPC6; P 20.4 16 0.00053 34.8 -1.0 13 79-91 149-161 (165)
155 2orv_A Thymidine kinase; TP4A 20.4 30 0.001 35.6 1.1 35 37-71 151-190 (234)
156 2kwj_A Zinc finger protein DPF 20.3 65 0.0022 29.1 3.2 49 37-85 2-59 (114)
No 1
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=100.00 E-value=4.2e-45 Score=321.70 Aligned_cols=84 Identities=65% Similarity=1.327 Sum_probs=81.7
Q ss_pred cccccccCCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccccCCCCCCCCCCCCCcc
Q 003929 28 VTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEEEDDTD 107 (786)
Q Consensus 28 ~~~~~~~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~kGsprV~Gd~ee~~~d 107 (786)
+|||+++++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+|||+|+++|
T Consensus 8 ~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GDe~e~d~d 87 (93)
T 1weo_A 8 PKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEEDID 87 (93)
T ss_dssp SSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCCCCSC
T ss_pred CCcccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccc
Q 003929 108 DLEN 111 (786)
Q Consensus 108 d~e~ 111 (786)
|+++
T Consensus 88 D~~~ 91 (93)
T 1weo_A 88 SGPS 91 (93)
T ss_dssp CCCS
T ss_pred cccc
Confidence 8764
No 2
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=99.94 E-value=4e-26 Score=266.20 Aligned_cols=257 Identities=24% Similarity=0.407 Sum_probs=203.4
Q ss_pred hHHH-HHHHHHHHHHHHhhhhcccCCc-----chhHHHHHHHHHHHHHHHHHHhhcccccccccchhhhhhhhhhhcCCC
Q 003929 288 YRLI-ILLRLVILGLFFHYRILHPVND-----AYGLWLTSVICEIWFAVSWILDQFPKWDPIVRETYLDRLSLRYEKEGK 361 (786)
Q Consensus 288 yR~~-ii~~lv~l~~yl~wRi~~~~~~-----a~~lWl~~~v~Ei~faf~wiL~q~~kw~Pv~R~t~~drL~~r~e~~~~ 361 (786)
.|++ +++.+++.++|++||++.+++. +.++|++++++|+++.+.|++.++..|+|+.|...++. .
T Consensus 65 ~~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~~---------~ 135 (802)
T 4hg6_A 65 PRFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRPL---------Q 135 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCCC---------C
T ss_pred hHHHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC---------C
Confidence 4554 5555666789999999986652 24678889999999999999999999999988765431 2
Q ss_pred CCCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCC
Q 003929 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (786)
Q Consensus 362 ~~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepR 441 (786)
++++|.|+|+||| |||++.++.+|+.|+++.|||.+++.|+|.|||.+.-|.+.
T Consensus 136 ~~~~P~VSViIPt---yNe~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~----------------------- 189 (802)
T 4hg6_A 136 PEELPTVDILVPS---YNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS----------------------- 189 (802)
T ss_dssp TTTCCCEEEEEEC---TTCCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC-----------------------
T ss_pred ccCCCcEEEEEEE---CCCCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc-----------------------
Confidence 4579999999999 89999999999999999999999999999999998844321
Q ss_pred CchhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccC
Q 003929 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (786)
Q Consensus 442 aPe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~ 521 (786)
..|+.+++ +.+-...++.++++
T Consensus 190 ----------------~d~~i~~~-------~~~~~~~l~~~~~~----------------------------------- 211 (802)
T 4hg6_A 190 ----------------PDPELAQK-------AQERRRELQQLCRE----------------------------------- 211 (802)
T ss_dssp ----------------SSHHHHHH-------HHHHHHHHHHHHHH-----------------------------------
T ss_pred ----------------CCHHHHHH-------HHhhhHHHHHHHHh-----------------------------------
Confidence 11222222 11112223333321
Q ss_pred CCcccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc-cCCCCc
Q 003929 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGK 600 (786)
Q Consensus 522 ~g~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl-Dp~~g~ 600 (786)
..+.|+.|++ +++.||||+|.+++. ++++||+++|||. ++.|++|++++.+|. ||+
T Consensus 212 -----------~~v~~i~~~~----~~~GKa~alN~gl~~----a~gd~Il~lDaD~-~~~pd~L~~lv~~~~~dp~--- 268 (802)
T 4hg6_A 212 -----------LGVVYSTRER----NEHAKAGNMSAALER----LKGELVVVFDADH-VPSRDFLARTVGYFVEDPD--- 268 (802)
T ss_dssp -----------HTCEEEECSS----CCSHHHHHHHHHHHH----CCCSEEEECCTTE-EECTTHHHHHHHHHHHSSS---
T ss_pred -----------cCcEEEEecC----CCCcchHHHHHHHHh----cCCCEEEEECCCC-CcChHHHHHHHHHHhcCCC---
Confidence 1167888887 567999999999998 5799999999999 589999999999995 765
Q ss_pred ceEEEecCccccCCCC-------CCCccchhhhhhhhhccccccCCCceecccchhhhhhhh---cCCCCC
Q 003929 601 KICYVQFPQRFDGIDR-------HDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL---YGYDAP 661 (786)
Q Consensus 601 ~vafVQtPQ~F~nid~-------~D~~~n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL---~G~~Pp 661 (786)
+++||+|+.|.|.++ -..+.+++..||...+.+++.+++++++|+++++||+++ .|+++.
T Consensus 269 -v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~vGgf~~~ 338 (802)
T 4hg6_A 269 -LFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDEAGGFAGE 338 (802)
T ss_dssp -CCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHHHHTTCCCS
T ss_pred -eEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHHHHcCCcCCC
Confidence 779999999999763 245567788999999999999999999999999999999 456543
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.08 E-value=3.3e-10 Score=126.82 Aligned_cols=127 Identities=18% Similarity=0.198 Sum_probs=96.7
Q ss_pred CCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCC
Q 003929 363 SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRA 442 (786)
Q Consensus 363 ~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRa 442 (786)
..+|.|.|+|+| |+|+ ..+..|+.|+++.+||. .+.|+|.|||.+.-|.+.+
T Consensus 90 ~~~p~vsviIp~---~n~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~----------------------- 141 (625)
T 2z86_A 90 LIIDGLSIVIPT---YNRA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIV----------------------- 141 (625)
T ss_dssp CCCCCEEEEEEE---SSCH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHH-----------------------
T ss_pred ccCCcEEEEEec---CCcH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHH-----------------------
Confidence 468999999999 7985 78889999999999986 7899999999886221100
Q ss_pred chhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCC
Q 003929 443 PEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQN 522 (786)
Q Consensus 443 Pe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~ 522 (786)
+.+.
T Consensus 142 --------------------------------------~~~~-------------------------------------- 145 (625)
T 2z86_A 142 --------------------------------------REFE-------------------------------------- 145 (625)
T ss_dssp --------------------------------------HTTT--------------------------------------
T ss_pred --------------------------------------HHhh--------------------------------------
Confidence 0110
Q ss_pred CcccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc-cCCCCcc
Q 003929 523 GVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKK 601 (786)
Q Consensus 523 g~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl-Dp~~g~~ 601 (786)
.-+.+.|+.+++ ..+.||+|+|.+++. +.++||++||+|. ++.|++|.+++-+|. +| .
T Consensus 146 --------~~~~i~~i~~~~----~~~g~~~a~N~g~~~----a~g~~v~~lD~D~-~~~~~~l~~~~~~~~~~~----~ 204 (625)
T 2z86_A 146 --------SLLNIKYVRQKD----YGYQLCAVRNLGLRA----AKYNYVAILDCDM-APNPLWVQSYMELLAVDD----N 204 (625)
T ss_dssp --------TTSCEEEEEECC----CSCCHHHHHHHHHHH----CCSSEEEEECTTE-EECTTHHHHHHHHHHHCT----T
T ss_pred --------hcCCeEEEEeCC----CCcchhHHHHHHHHh----CCcCEEEEECCCC-CCCHHHHHHHHHHHhcCC----c
Confidence 002367777653 234699999999987 5799999999999 589999999999997 44 4
Q ss_pred eEEEecCccccCC
Q 003929 602 ICYVQFPQRFDGI 614 (786)
Q Consensus 602 vafVQtPQ~F~ni 614 (786)
+++|+..+.+.+.
T Consensus 205 ~~~~g~~~~~~~~ 217 (625)
T 2z86_A 205 VALIGPRKYIDTS 217 (625)
T ss_dssp EEEECCEEEECCT
T ss_pred eEEEEeeeeccCc
Confidence 7788877666544
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=98.90 E-value=1.4e-09 Score=106.60 Aligned_cols=161 Identities=12% Similarity=0.165 Sum_probs=107.5
Q ss_pred CceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCchh
Q 003929 366 ADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPEW 445 (786)
Q Consensus 366 P~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaPe~ 445 (786)
|.|.|+|+| |+++ ..+..|+.|+++.+|| .+.|+|.|||.+.-|.+.+.
T Consensus 1 p~vSViIp~---yn~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~------------------------- 49 (255)
T 1qg8_A 1 PKVSVIMTS---YNKS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIR------------------------- 49 (255)
T ss_dssp CCEEEEEEE---SSCT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHG-------------------------
T ss_pred CeEEEEEEc---CCCH-HHHHHHHHHHHhccCC--ceEEEEEECCCCchHHHHHH-------------------------
Confidence 679999999 7887 7888999999999998 48899999998873321110
Q ss_pred hhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCCcc
Q 003929 446 YFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGVR 525 (786)
Q Consensus 446 YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g~~ 525 (786)
.++.
T Consensus 50 ------------------------------------~~~~---------------------------------------- 53 (255)
T 1qg8_A 50 ------------------------------------PFLN---------------------------------------- 53 (255)
T ss_dssp ------------------------------------GGGG----------------------------------------
T ss_pred ------------------------------------HHhh----------------------------------------
Confidence 0100
Q ss_pred cCcCCccCcEEEEeccCCCCC----CCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc-cCCCCc
Q 003929 526 DIEGNLLPRLVYVSREKRPGF----DHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGK 600 (786)
Q Consensus 526 d~~g~~lP~lvYvSREKrpg~----~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl-Dp~~g~ 600 (786)
-|++.|+..+.. +. ....+++|+|.+++. ++|+||+.||+|.+ ..|++|.+++-+|. +|+
T Consensus 54 ------~~~i~~i~~~~~-~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~-~~~~~l~~~~~~~~~~~~--- 118 (255)
T 1qg8_A 54 ------DNRVRFYQSDIS-GVKERTEKTRYAALINQAIEM----AEGEYITYATDDNI-YMPDRLLKMVRELDTHPE--- 118 (255)
T ss_dssp ------STTEEEEECCCC-SHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEE-ECTTHHHHHHHHHHHCTT---
T ss_pred ------cCCEEEEecccc-cccccccccCHHHHHHHHHHH----cCCCEEEEeCCCCc-cChHHHHHHHHHHHhCCC---
Confidence 123566666510 00 023599999999987 58999999999995 78999999999997 444
Q ss_pred ceEEEecCcccc--CCCCCCCccchhhhhhhhhccccccCCCceecccchhhhhhhh
Q 003929 601 KICYVQFPQRFD--GIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL 655 (786)
Q Consensus 601 ~vafVQtPQ~F~--nid~~D~~~n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL 655 (786)
+++|.+...+. +.+.. ..... +.. .............|++.++||++|
T Consensus 119 -~~~v~~~~~~~~~~~~~~-~~~~~----~~~-~~~~~~~~~~~~~~~~~~~rr~~~ 168 (255)
T 1qg8_A 119 -KAVIYSASKTYHLNENRD-IVKET----VRP-AAQVTWNAPCAIDHCSVMHRYSVL 168 (255)
T ss_dssp -CCEEEEEEEEEEEC---C-EEEEE----EEC-CCSCBSCCTTTSCGGGEEEETHHH
T ss_pred -ceEEEeceEEEEeCCCCc-chhhc----cCc-hHHHHHhhcCCCccceEEEEHHHH
Confidence 66888776655 32211 11110 000 001111344567789999999999
No 5
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=98.83 E-value=9.7e-09 Score=111.38 Aligned_cols=114 Identities=17% Similarity=0.100 Sum_probs=90.7
Q ss_pred CCCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCch-hhHHHHHHHHHHhhhhHhHHhhhcCCC
Q 003929 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM-LTFEALSETSEFARKWVPFCKKFKIEP 440 (786)
Q Consensus 362 ~~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~-lTf~aL~Eaa~FA~~WvPFCkK~~Iep 440 (786)
+..+|.|.|+|+| |+|+...+..||.|+++..||...+.|+|.|||.+. -|.+.|
T Consensus 25 ~~~~p~vSVIIp~---yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l--------------------- 80 (472)
T 1xhb_A 25 PDNLPTTSVVIVF---HNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPL--------------------- 80 (472)
T ss_dssp CSCCCCEEEEEEE---SSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHH---------------------
T ss_pred CcCCCCeEEEEEe---CCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHH---------------------
Confidence 3579999999999 899988999999999999999766799999999875 122111
Q ss_pred CCchhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeecc
Q 003929 441 RAPEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLG 520 (786)
Q Consensus 441 RaPe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~ 520 (786)
+.+++
T Consensus 81 ----------------------------------------~~~~~----------------------------------- 85 (472)
T 1xhb_A 81 ----------------------------------------ESYVK----------------------------------- 85 (472)
T ss_dssp ----------------------------------------HHHHH-----------------------------------
T ss_pred ----------------------------------------HHHHH-----------------------------------
Confidence 11211
Q ss_pred CCCcccCcCCccC-cEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc
Q 003929 521 QNGVRDIEGNLLP-RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM 594 (786)
Q Consensus 521 ~~g~~d~~g~~lP-~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl 594 (786)
.+| ++.+|..+++.| +++|+|.+++. +.|+||++||+|. ...|++|.+++-+|.
T Consensus 86 ----------~~~~~v~vi~~~~n~G-----~~~a~N~g~~~----A~gd~i~flD~D~-~~~p~~L~~ll~~~~ 140 (472)
T 1xhb_A 86 ----------KLKVPVHVIRMEQRSG-----LIRARLKGAAV----SRGQVITFLDAHC-ECTAGWLEPLLARIK 140 (472)
T ss_dssp ----------SSSSCEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEEEESSE-EECTTCHHHHHHHHH
T ss_pred ----------HCCCcEEEEECCCCCC-----hHHHHHHHHHh----ccCCeEEEECCCe-EeCccHHHHHHHHHH
Confidence 123 467777766544 99999999987 5699999999999 599999999999987
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=98.81 E-value=5.1e-09 Score=114.95 Aligned_cols=113 Identities=16% Similarity=0.087 Sum_probs=90.1
Q ss_pred CCCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCC
Q 003929 362 PSDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPR 441 (786)
Q Consensus 362 ~~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepR 441 (786)
+..+|.|.|+|+| |+|+...+..||.|+++..||...+.|+|.|||.+.-|...
T Consensus 62 ~~~~p~vSVIIp~---yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~----------------------- 115 (501)
T 2ffu_A 62 RVDLPATSVVITF---HNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGA----------------------- 115 (501)
T ss_dssp CSSCCCEEEEEEE---SSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHH-----------------------
T ss_pred CcCCCCEEEEEEe---CcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHH-----------------------
Confidence 3579999999999 89998789999999999999976678999999987622100
Q ss_pred CchhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccC
Q 003929 442 APEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQ 521 (786)
Q Consensus 442 aPe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~ 521 (786)
+.+
T Consensus 116 -----------------------------------------~~~------------------------------------ 118 (501)
T 2ffu_A 116 -----------------------------------------LLG------------------------------------ 118 (501)
T ss_dssp -----------------------------------------GGG------------------------------------
T ss_pred -----------------------------------------HHh------------------------------------
Confidence 000
Q ss_pred CCcccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccC
Q 003929 522 NGVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (786)
Q Consensus 522 ~g~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp 596 (786)
..|++.||..+++. .+++|+|.+++. +.|+||+.||+|. ...|++|.+++-.+...
T Consensus 119 ---------~~~~v~vi~~~~n~-----G~~~A~N~G~~~----A~gd~i~flD~D~-~~~p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 119 ---------KIEKVRVLRNDRRE-----GLMRSRVRGADA----AQAKVLTFLDSHC-ECNEHWLEPLLERVAED 174 (501)
T ss_dssp ---------GBTTEEEEECSSCC-----HHHHHHHHHHHH----CCSSEEEECCSSE-EECTTCHHHHHHHHHHC
T ss_pred ---------cCCCEEEEECCCCc-----CHHHHHHHHHHh----cCCCEEEEECCCc-ccCccHHHHHHHHHHhC
Confidence 12446777766643 489999999987 5799999999999 58899999999998753
No 7
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=98.81 E-value=5.8e-09 Score=117.33 Aligned_cols=115 Identities=17% Similarity=0.091 Sum_probs=90.3
Q ss_pred CCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCC
Q 003929 363 SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRA 442 (786)
Q Consensus 363 ~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRa 442 (786)
..+|.|.|+|+| |+|+...+.+||.|+++..||...+.|+|.|||.+.-|+.++
T Consensus 109 ~~~P~vSVIIp~---yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~----------------------- 162 (570)
T 2d7i_A 109 ETLPNTSIIIPF---HNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKP----------------------- 162 (570)
T ss_dssp SSCCCEEEEEEE---SSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHH-----------------------
T ss_pred CCCCCeEEEEEE---CCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHH-----------------------
Confidence 468999999999 799988999999999999999756689999999887331111
Q ss_pred chhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCC
Q 003929 443 PEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQN 522 (786)
Q Consensus 443 Pe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~ 522 (786)
++.+++
T Consensus 163 -------------------------------------l~~~~~------------------------------------- 168 (570)
T 2d7i_A 163 -------------------------------------LEDYMA------------------------------------- 168 (570)
T ss_dssp -------------------------------------HHHHHT-------------------------------------
T ss_pred -------------------------------------HHHHHH-------------------------------------
Confidence 111210
Q ss_pred CcccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhccccc
Q 003929 523 GVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD 595 (786)
Q Consensus 523 g~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflD 595 (786)
..|++.+|..+++. .+++|+|.+++. +.|+||++||+|. +.+|++|.+++-+|.+
T Consensus 169 --------~~~~v~vi~~~~n~-----G~~~A~N~G~~~----A~gd~i~fLD~D~-~~~p~~L~~ll~~l~~ 223 (570)
T 2d7i_A 169 --------LFPSVRILRTKKRE-----GLIRTRMLGASV----ATGDVITFLDSHC-EANVNWLPPLLDRIAR 223 (570)
T ss_dssp --------TSTTEEEEECSSCC-----CHHHHHHHHHHH----CCSSEEEECCSSE-EECTTCSHHHHHHHHH
T ss_pred --------hCCeEEEEECCCCC-----CHHHHHHHHHHh----cCCCEEEEEcCCc-cccccHHHHHHHHHHh
Confidence 12446777666543 499999999997 5799999999999 4799999999999875
No 8
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=98.79 E-value=1.2e-08 Score=98.75 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=84.5
Q ss_pred CCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCc
Q 003929 364 DLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAP 443 (786)
Q Consensus 364 ~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaP 443 (786)
..|.|.|+|+| |+++ ..+..++.|+++.+|| .+.|+|.|||.+.-|.+.+.
T Consensus 3 ~~p~vsViIp~---yn~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~----------------------- 53 (240)
T 3bcv_A 3 LIPKVSVIVPI---YNVE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICD----------------------- 53 (240)
T ss_dssp CCCSEEEEEEE---SSCT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHH-----------------------
T ss_pred CCCcEEEEEec---CCCH-HHHHHHHHHHHhCcCC--CeEEEEEECCCCcCHHHHHH-----------------------
Confidence 46899999999 7887 6788999999999998 48899999998873322111
Q ss_pred hhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCC
Q 003929 444 EWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNG 523 (786)
Q Consensus 444 e~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g 523 (786)
.+.++
T Consensus 54 --------------------------------------~~~~~------------------------------------- 58 (240)
T 3bcv_A 54 --------------------------------------DYAAQ------------------------------------- 58 (240)
T ss_dssp --------------------------------------HHHHH-------------------------------------
T ss_pred --------------------------------------HHHhh-------------------------------------
Confidence 11111
Q ss_pred cccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccC
Q 003929 524 VRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (786)
Q Consensus 524 ~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp 596 (786)
.|++.|+.. +. ..+++|+|.+++. +.|+||+.||+|. +..|++|.+.+-.|.++
T Consensus 59 --------~~~i~~i~~-~n-----~G~~~a~N~g~~~----a~g~~i~~lD~Dd-~~~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 59 --------YPNIKVIHK-KN-----AGLGMACNSGLDV----ATGEYVAFCDSDD-YVDSDMYMTMYNVAQKY 112 (240)
T ss_dssp --------CSSEEEEEC-CC-----CCHHHHHHHHHHH----CCSSEEEECCTTC-CCCTTHHHHHHHHHHHH
T ss_pred --------CCCEEEEEC-CC-----CChHHHHHHHHHH----cCCCEEEEECCCC-cCCHHHHHHHHHHHHhc
Confidence 133566643 22 3599999999997 5799999999999 58999999999999763
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=98.60 E-value=6.8e-08 Score=108.21 Aligned_cols=166 Identities=16% Similarity=0.206 Sum_probs=112.9
Q ss_pred CCCCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCC
Q 003929 363 SDLADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRA 442 (786)
Q Consensus 363 ~~LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRa 442 (786)
...|.|.|+|+| |+++ ..+..||.|+++.+||. +.|+|.|||.+.-|.+-+.
T Consensus 372 ~~~~~vsiii~~---yn~~-~~l~~~l~s~~~q~~~~--~eiivvdd~S~d~t~~~~~---------------------- 423 (625)
T 2z86_A 372 KRVPLVSIYIPA---YNCS-KYIVRCVESALNQTITD--LEVCICDDGSTDDTLRILQ---------------------- 423 (625)
T ss_dssp CSSCSEEEEEEE---SSCT-TTHHHHHHHHHSSSCCS--EEEEEEEESCSSSHHHHHH----------------------
T ss_pred ccCCeEEEEEeC---CCCH-HHHHHHHHHHHhCcCCC--eEEEEEECcCChhHHHHHH----------------------
Confidence 357899999999 7885 67899999999999984 7899999998873322111
Q ss_pred chhhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCC
Q 003929 443 PEWYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQN 522 (786)
Q Consensus 443 Pe~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~ 522 (786)
.+.+
T Consensus 424 ---------------------------------------~~~~------------------------------------- 427 (625)
T 2z86_A 424 ---------------------------------------EHYA------------------------------------- 427 (625)
T ss_dssp ---------------------------------------HHHT-------------------------------------
T ss_pred ---------------------------------------HHHh-------------------------------------
Confidence 1110
Q ss_pred CcccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc-cCCCCcc
Q 003929 523 GVRDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKK 601 (786)
Q Consensus 523 g~~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl-Dp~~g~~ 601 (786)
..|++.|+. ++. ..+++|+|.+++. ++|+||+.||+|- +..|++|.+.+-.|. +|.
T Consensus 428 --------~~~~i~~~~-~~n-----~G~~~a~n~g~~~----a~g~~i~~ld~D~-~~~~~~l~~~~~~~~~~~~---- 484 (625)
T 2z86_A 428 --------NHPRVRFIS-QKN-----KGIGSASNTAVRL----CRGFYIGQLDSDD-FLEPDAVELCLDEFRKDLS---- 484 (625)
T ss_dssp --------TCTTEEEEE-ECC-----CCHHHHHHHHHHH----CCSSEEEECCTTC-EECTTHHHHHHHHHHHCTT----
T ss_pred --------hCCcEEEEe-CCC-----CCHHHHHHHHHHh----cCCCEEEEECCCc-ccChhHHHHHHHHHHhCCC----
Confidence 013456664 332 2599999999987 5799999999999 589999999998875 554
Q ss_pred eEEEecCccccCCCCCCCccchhhhhhhhhccccccCCCceecccchhhhhhhh---cCCCC
Q 003929 602 ICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQAL---YGYDA 660 (786)
Q Consensus 602 vafVQtPQ~F~nid~~D~~~n~~~vFf~ii~~g~Dg~~g~~~~GTgcv~RR~AL---~G~~P 660 (786)
+++|.+...+.+.+..-.... +.......+.+...+++|++.++||+++ .||++
T Consensus 485 ~~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ggfd~ 541 (625)
T 2z86_A 485 LACVYTTNRNIDREGNLISNG-----YNWPIYSREKLTSAMICHHFRMFTARAWNLTEGFNE 541 (625)
T ss_dssp CSEEEEEEEEECTTSCEEEEC-----CCCSSCCHHHHTTSCCCCSCEEEEHHHHTTTTCCCS
T ss_pred eeEEEeeeEEECCCCCEeccC-----cccccCCHHHHhhcccCCceEEEEHHHHHHhCCCCC
Confidence 668888766654432110000 0000111122344567889999999998 45543
No 10
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=98.40 E-value=1.8e-07 Score=97.72 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=42.7
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc-cCCCCcceEEEecCc
Q 003929 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQFPQ 609 (786)
Q Consensus 550 ~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl-Dp~~g~~vafVQtPQ 609 (786)
.|++|+|.+++. ++|+||+.+|+|.....|++|.+.+-+|+ +|+ +++|+...
T Consensus 118 G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~----~~~v~g~~ 170 (329)
T 3ckj_A 118 GKGEALWRSLAA----SRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDG----VHLVKSFY 170 (329)
T ss_dssp SHHHHHHHHHHH----CCCSEEEECCTTEESCCTTHHHHHHHHHHSCSS----CCEEEEEE
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCCCcChHHHHHHHHHHHhCCC----ccEEEEEe
Confidence 599999999987 57999999999993379999999998865 554 56777743
No 11
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.14 E-value=2.8e-07 Score=106.12 Aligned_cols=111 Identities=14% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCchhhHHHHHHHHHHhhhhHhHHhhhcCCCCCch
Q 003929 365 LADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFKIEPRAPE 444 (786)
Q Consensus 365 LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~lTf~aL~Eaa~FA~~WvPFCkK~~IepRaPe 444 (786)
.|.|.|+|+| ||++ ..+..||-|+++.+|| .+.|+|.|||.+.-|.+-+.+
T Consensus 1 Mp~vSVIIp~---yN~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~----------------------- 51 (729)
T 3l7i_A 1 MNKLTIIVTY---YNAE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDE----------------------- 51 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CceEEEEEEc---CCCH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCCcHHHHHHH-----------------------
Confidence 3789999999 7887 6788999999999999 478999999988733222111
Q ss_pred hhhhhccccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccCCCCCCCCCccCCCcceeeeccCCCc
Q 003929 445 WYFAQKLDYLKDKVNPSFIRERRAMKREYEEFKVRINGLVAMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQNGV 524 (786)
Q Consensus 445 ~YFs~k~d~~k~~~~~~f~~e~r~~KreYee~k~RI~~L~~~~~~vp~~~w~m~dgt~W~g~~~rdHp~iIqVll~~~g~ 524 (786)
++++ |+
T Consensus 52 --------------------------------------~~~~------------------------~~------------ 57 (729)
T 3l7i_A 52 --------------------------------------AIKD------------------------YD------------ 57 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------HHHh------------------------CC------------
Confidence 0000 00
Q ss_pred ccCcCCccCcEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccC
Q 003929 525 RDIEGNLLPRLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDP 596 (786)
Q Consensus 525 ~d~~g~~lP~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp 596 (786)
+++.|+..++.. ..++|+|.+++. +.|+||+.+|+|-+ ..|++|.+.+-.|.++
T Consensus 58 --------~~i~~i~~~~n~-----G~~~arN~gi~~----A~gdyI~flD~Dd~-~~p~~l~~l~~~l~~~ 111 (729)
T 3l7i_A 58 --------KNIRFIDLDENS-----GHAHARNIALEE----VETPYFMFLDADDE-LASYAITFYLEKFNNT 111 (729)
T ss_dssp ------------------------------------------------------------------------
T ss_pred --------CCEEEEECCCCC-----CHHHHHHHHHHh----ccCCEEEEECCCCC-CChhHHHHHHHHhcCC
Confidence 124555544432 479999999986 57999999999995 7999999999999843
No 12
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=97.87 E-value=1.4e-05 Score=86.84 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=40.8
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc-cCCCCcceEEEec
Q 003929 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM-DPTSGKKICYVQF 607 (786)
Q Consensus 550 ~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl-Dp~~g~~vafVQt 607 (786)
.|++|+|.+++. ..++||+.+|+|....+|++|.+.+-.+. +|. +.+|..
T Consensus 166 G~g~A~n~G~~~----A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p~----~d~v~G 216 (387)
T 3f1y_A 166 GKGDAMWRALSV----TRGDLVLYIDADTRDFRPQLAYGVLGPVLEVPG----VRFVKA 216 (387)
T ss_dssp SHHHHHHHHTTT----CCSSEEEECCTTCSSCCTHHHHTTHHHHHHSTT----CCEEEE
T ss_pred CHHHHHHHHHHh----cCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCCC----ceEEEE
Confidence 499999999986 57999999999993279999999998886 444 446654
No 13
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=97.84 E-value=1.9e-05 Score=91.16 Aligned_cols=64 Identities=13% Similarity=0.062 Sum_probs=46.2
Q ss_pred cEEEEeccCCCCCCCCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccccCCCCcceEEEec
Q 003929 534 RLVYVSREKRPGFDHHKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKICYVQF 607 (786)
Q Consensus 534 ~lvYvSREKrpg~~Hh~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflDp~~g~~vafVQt 607 (786)
++.||..+ . ...||+.|.+++...-.++++||+.||.|- ++.|++|.+++-+|... +++++|+.
T Consensus 241 ~I~vI~~~-N-----~G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~-~~~pd~L~~ll~~l~~~---~~~~~vg~ 304 (657)
T 4fix_A 241 RLSIHDQP-N-----LGGSGGYSRVMYEALKNTDCQQILFMDDDI-RLEPDSILRVLAMHRFA---KAPMLVGG 304 (657)
T ss_dssp GEEEEECC-C-----CHHHHHHHHHHHHHHHHCCCSEEEEECSSE-EECTHHHHHHHHHHHHB---SSCCEEEE
T ss_pred CEEEEECC-C-----CCHHHHHHHHHHHHHhcCCCCEEEEECCCC-ccChhHHHHHHHHHHhC---CCcEEEEe
Confidence 36666543 2 247999999998742223789999999999 58899999999998732 12445553
No 14
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.43 E-value=0.0042 Score=53.38 Aligned_cols=52 Identities=31% Similarity=0.885 Sum_probs=43.0
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
...|.||-+.+.+ +.-.|.+| .||.-+|+.|+.--.++++..||.|+.+|..
T Consensus 11 ~~~CpICle~~~~--~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 11 PVECPLCMEPLEI--DDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCBCTTTCCBCCT--TTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CCcCCccCccCcc--cccccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 4589999997633 34468888 9999999999987777788999999999964
No 15
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=95.10 E-value=0.023 Score=61.17 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=37.4
Q ss_pred CCceeEEeccCCCCCCCHHHHHHHHHHHHcCCCCCCccEEEEcCCCCch
Q 003929 365 LADIDIFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAM 413 (786)
Q Consensus 365 LP~VDVFV~TaDP~kEPp~v~~nTVLS~lAlDYP~~Kl~vYVsDDG~s~ 413 (786)
|+.+-|+|.| ||-| . +..|+-|+++..++.++.-++|+|||...
T Consensus 1 ~~~~pViI~~---yNRp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~ 44 (343)
T 1fo8_A 1 LAVIPILVIA---CDRS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEE---SSCT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCcccEEEEE---CCcH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCH
Confidence 4557789999 6888 5 99999999999977778889999999764
No 16
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=93.51 E-value=0.45 Score=52.04 Aligned_cols=46 Identities=15% Similarity=-0.039 Sum_probs=34.3
Q ss_pred CcchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhcccc
Q 003929 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMM 594 (786)
Q Consensus 549 h~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcffl 594 (786)
..|.+||+++++..-....|++|+.+|||-.-..|+.+.+.+-.+.
T Consensus 74 ~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~P~~i~~Ll~~l~ 119 (397)
T 2bo4_A 74 PGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAAD 119 (397)
T ss_dssp SSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 3699999999932100267999999999994258999988776553
No 17
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=93.07 E-value=0.19 Score=50.13 Aligned_cols=39 Identities=5% Similarity=0.031 Sum_probs=34.2
Q ss_pred hhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHHhhccccc
Q 003929 552 AGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALREAMCFMMD 595 (786)
Q Consensus 552 AGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~amcfflD 595 (786)
|.|+|.+++. +.|+||+.||+|-+ ..+++|.+.+-+|..
T Consensus 63 a~a~N~Gi~~----A~g~yl~fln~D~~-~~~~~l~~l~~~~~~ 101 (249)
T 2nxv_A 63 FSWHKQMLPR----CKGRYVIFCHEDVE-LVDRGYDDLVAAIEA 101 (249)
T ss_dssp TTHHHHHGGG----CCSSEEEEEETTEE-CSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHh----cCCCEEEEECCCcc-cCccHHHHHHHHHHh
Confidence 7889999987 56999999999995 699999999988874
No 18
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=88.84 E-value=0.38 Score=39.37 Aligned_cols=50 Identities=34% Similarity=0.626 Sum_probs=36.5
Q ss_pred CCccccccCccccccCCCCceeecCCCCC---CcchhhhHHHHhh-CCCcCCCCccccc
Q 003929 35 SGQICQICGDEIEITDNGEPFVACNECAF---PVCRPCYEYERRE-GNQACPQCKTRYK 89 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~F---pVCRpCYeyErke-G~q~CPqCkt~Yk 89 (786)
.+..|.||-++ .++++..+| .|.= -|=+.|.+-=++. |+..||.|+++|.
T Consensus 5 ~~~~CrIC~~~----~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEE----LGNERFRAC-GCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEE----CSCCCCCSC-CCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecC----CCCceecCc-CCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45689999876 234578888 6643 4556788655554 6899999999995
No 19
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.63 E-value=0.45 Score=37.97 Aligned_cols=54 Identities=26% Similarity=0.639 Sum_probs=39.3
Q ss_pred CCccccccCccccccC-CCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 35 SGQICQICGDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~-~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
....|.||-+.+.-.. .++.++.- .|+--.|+.|.+--.+. +..||-|++++.+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 4568999999865543 34444443 78999999999655444 6899999998753
No 20
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.50 E-value=0.67 Score=39.92 Aligned_cols=55 Identities=25% Similarity=0.541 Sum_probs=39.9
Q ss_pred ccCCccccccCccccccCCCCceeecCCCC---CCcchhhhHHHHhh-CCCcCCCCcccccc
Q 003929 33 ELSGQICQICGDEIEITDNGEPFVACNECA---FPVCRPCYEYERRE-GNQACPQCKTRYKR 90 (786)
Q Consensus 33 ~~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~---FpVCRpCYeyErke-G~q~CPqCkt~Ykr 90 (786)
......|.||-++. ++++.+..+| .|. --+.+.|.+-=.+. ++..||.|++.|.-
T Consensus 12 ~~~~~~C~IC~~~~--~~~~~l~~pC-~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEG--DDESPLITPC-HCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCC--CSSSCEECSS-SCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccc--cCCCeeEecc-ccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34566999998874 3445567778 563 67999999655554 44799999999964
No 21
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=86.92 E-value=0.33 Score=39.17 Aligned_cols=55 Identities=25% Similarity=0.614 Sum_probs=40.2
Q ss_pred cCCccccccCccccccC-CCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 34 LSGQICQICGDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~-~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
.....|.||-+.+.-.. +++..+.- .|+--.|+.|.+--.+. +..||.|++++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 34568999999876543 45544444 89999999999654444 4799999998853
No 22
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=86.24 E-value=0.49 Score=39.14 Aligned_cols=47 Identities=15% Similarity=0.284 Sum_probs=37.4
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
.-.|.||.+... ++.+. .|+.-.|+.|.+--.+.|+..||.|++++.
T Consensus 8 ~~~C~IC~~~~~-----~Pv~~--~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 8 YFRCPISLELMK-----DPVIV--STGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSCTTTSCCCS-----SEEEE--TTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cCCCCCcccccc-----CCEEc--CCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 458999987542 24443 699999999998878888899999999884
No 23
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=85.64 E-value=0.54 Score=44.54 Aligned_cols=48 Identities=29% Similarity=0.750 Sum_probs=38.1
Q ss_pred ccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
..|.||-+.+.- + |.+..|+--.|+.|.+--.+.++..||.|++++..
T Consensus 55 ~~C~IC~~~~~~-----p-~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKN-----T-MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSS-----E-EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhC-----c-CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 389999887531 3 33347899999999988888888999999999853
No 24
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.48 E-value=0.73 Score=36.90 Aligned_cols=53 Identities=21% Similarity=0.519 Sum_probs=37.2
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
...|.||-+++..+.. ..++.= .|+--.|+.|.+--...++..||.|++++..
T Consensus 3 ~~~C~IC~~~~~~~~~-~~~~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPS-LKLMVN-VCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSS-CCEEEC-TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCc-cCeecC-CCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3579999884333221 122332 6899999999976656677899999999864
No 25
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=85.30 E-value=0.35 Score=38.00 Aligned_cols=53 Identities=26% Similarity=0.633 Sum_probs=38.7
Q ss_pred CccccccCccccccC-CCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~-~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
...|.||-+...-.. .++..+.- .|+--.|+.|.+--.+. +..||.|++++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 458999999865543 44444444 78999999999654444 6899999998853
No 26
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=84.97 E-value=2.1 Score=35.21 Aligned_cols=53 Identities=21% Similarity=0.488 Sum_probs=36.8
Q ss_pred cCCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccc
Q 003929 34 LSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~ 91 (786)
.....|.||-+.+.. ++..+.- .|+--.|+.|..--.+ .+..||-|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~~~-~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYAL---GESVRQL-PCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCT---TSCEEEC-TTSCEEETTTTHHHHT-TTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccC---CCCEEEe-CCCCeecHHHHHHHHH-cCCcCcCcCCccCCc
Confidence 345699999988643 3333222 4788899999964443 447999999998643
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.18 E-value=0.7 Score=37.11 Aligned_cols=48 Identities=19% Similarity=0.486 Sum_probs=36.8
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
...|.||.+.+. ++.+ -.|+--.|+.|.+--.+.++..||.|++++..
T Consensus 15 ~~~C~IC~~~~~-----~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLC-----SPKQ--TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEES-----SCCC--CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhc-----CeeE--CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 458999988753 1222 26888899999987776778899999999854
No 28
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.22 E-value=0.86 Score=36.96 Aligned_cols=48 Identities=31% Similarity=0.715 Sum_probs=36.1
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHh--hCCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR--EGNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErk--eG~q~CPqCkt~Ykr 90 (786)
...|.||-+.+. ++.+ . .|+--.|+.|..--.+ .++..||.|++++..
T Consensus 20 ~~~C~IC~~~~~-----~~~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 20 EVICPICLDILQ-----KPVT-I-DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCBCTTTCSBCS-----SEEE-C-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CCEeccCCcccC-----CeEE-c-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 458999998754 2333 2 7899999999976555 366799999999864
No 29
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=83.21 E-value=1.2 Score=46.46 Aligned_cols=39 Identities=8% Similarity=0.011 Sum_probs=29.5
Q ss_pred CCceeEEeccCCCCCCCHHHHHHHHHHHH---cCCCCCCccEEEEcCC
Q 003929 365 LADIDIFVSTVDPMKEPPLITANTVLSIL---AVDYPVDKVACYVSDD 409 (786)
Q Consensus 365 LP~VDVFV~TaDP~kEPp~v~~nTVLS~l---AlDYP~~Kl~vYVsDD 409 (786)
.|.|-|+|+| |+++ ..+..++.|++ ...|+ .+.|+|.||
T Consensus 64 ~~~VSIIIP~---yN~~-~~L~~~L~sl~~~l~q~~~--~~EIiVVdd 105 (287)
T 2fy7_A 64 PHKVAIIIPF---RNRQ-EHLKYWLYYLHPVLQRQQL--DYGIYVINQ 105 (287)
T ss_dssp SCEEEEEEEE---SSCH-HHHHHHHHHHHHHHHHTTC--EEEEEEEEE
T ss_pred CCcEEEEEee---CCCH-HHHHHHHHHHHHHHHHhcC--CceEEEEEe
Confidence 5889999999 6876 45677787777 45665 366888887
No 30
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=82.96 E-value=1.3 Score=33.98 Aligned_cols=50 Identities=28% Similarity=0.579 Sum_probs=35.7
Q ss_pred CCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccc
Q 003929 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Y 88 (786)
....|.||-+.+.. .++. +..-.|+--.|+.|..--.+.. ..||-|++++
T Consensus 4 ~~~~C~IC~~~~~~--~~~~-~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHT--SRVV-AHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCT--TTSC-EEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCcCcccChhhcC--CCcC-eEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 35689999988642 2222 3334688899999997655555 8999999875
No 31
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=82.58 E-value=1.4 Score=33.72 Aligned_cols=49 Identities=24% Similarity=0.518 Sum_probs=34.7
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Y 88 (786)
...|.||-+.+.. |+..+....|+--.|+.|..--. ..+..||-|++++
T Consensus 5 ~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~~w~-~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 5 GVECAVCLAELED---GEEARFLPRCGHGFHAECVDMWL-GSHSTCPLCRLTV 53 (55)
T ss_dssp SCCCTTTCCCCCT---TSCCEECSSSCCEECTTHHHHTT-TTCCSCSSSCCCS
T ss_pred CCcCccCCccccC---CCceEECCCCCCcccHHHHHHHH-HcCCcCcCCCCEe
Confidence 4589999988643 34334443588889999995333 3468999999875
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=82.15 E-value=0.98 Score=40.79 Aligned_cols=47 Identities=26% Similarity=0.656 Sum_probs=35.9
Q ss_pred ccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
..|.||-+.+- ++.+. .|+--.|+.|.+--.+.+...||.|++++..
T Consensus 53 ~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITT--VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCS-----SEEEC--TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHc-----CcEEe--eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47999988754 23222 6899999999976666666699999999954
No 33
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.83 E-value=0.67 Score=40.41 Aligned_cols=62 Identities=21% Similarity=0.433 Sum_probs=45.4
Q ss_pred cccCCceEEEeecccccccccccccCCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHh
Q 003929 10 GSHNRNEFVLINADEVARVTSVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR 75 (786)
Q Consensus 10 g~~~r~~~~~~~~~~~~~~~~~~~~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErk 75 (786)
||.-.|||..++.-+- ..+..+-+...|..|+...|+- +.--+.|..|...||+.|-.+...
T Consensus 1 ~~~~~~eL~elrrkga--k~~s~~~~~r~CarC~~~LG~l--~~~g~~C~~Ck~rVC~~Crv~~~~ 62 (76)
T 2csz_A 1 GSSGSSGLLEIKRKGA--KRGSQHYSDRTCARCQESLGRL--SPKTNTCRGCNHLVCRDCRIQESN 62 (76)
T ss_dssp CCCCCCCCCCCCCCCS--CSCCTTCCCCBCSSSCCBCSSS--CTTTSEETTTTEECCTTSEEECST
T ss_pred CchhHHHHHHHHHccc--cCcCcCCCccchhhhCcccccc--ccCCCcCcccChhhcccccccCCC
Confidence 4455789988875432 1233456677999999999986 444578999999999999876644
No 34
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=81.47 E-value=1.5 Score=38.83 Aligned_cols=59 Identities=22% Similarity=0.471 Sum_probs=41.1
Q ss_pred CCccccccCccccccC-----------CCCceeecCCCCCCcchhhhHHHHh----hCCCcCCCCccccccccC
Q 003929 35 SGQICQICGDEIEITD-----------NGEPFVACNECAFPVCRPCYEYERR----EGNQACPQCKTRYKRIKG 93 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~-----------~Ge~FvAC~eC~FpVCRpCYeyErk----eG~q~CPqCkt~Ykr~kG 93 (786)
....|.||-+.+...+ +-..++..-.|+=-.|+.|..--.+ ..+..||-|++.|...+|
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 3458999998865432 1123444557888999999975554 456799999999965544
No 35
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=80.76 E-value=8.9 Score=42.27 Aligned_cols=36 Identities=31% Similarity=0.352 Sum_probs=27.5
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCcHHHHHH
Q 003929 550 KKAGAMNALIRVSAVISNAPYLLNVDCDHYINNSKALRE 588 (786)
Q Consensus 550 ~KAGALN~lLrvSa~~TngpfILnLDaD~yinnp~~Lr~ 588 (786)
.|..||=+.+.+.. ...+++|+.+|||-|+ |.++.+
T Consensus 144 GKG~Am~aGl~~A~-~~~gd~Vv~~DaDl~i--P~~v~~ 179 (394)
T 2zu9_A 144 GKGEGMLVGLLLAK-AIGAEYVGFVDADNYI--PGAVNE 179 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCSEEEECCSCBSC--HHHHHH
T ss_pred ChHHHHHHHHHHHh-hCCCCEEEEEeCCCCC--HHHHHH
Confidence 69999999997742 1279999999999964 555543
No 36
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.88 E-value=2.1 Score=35.66 Aligned_cols=52 Identities=21% Similarity=0.423 Sum_probs=36.9
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhh--CCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERRE--GNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErke--G~q~CPqCkt~Ykr 90 (786)
...|.||-+....+ ....+.- .|+--.|+.|.+--.+. +...||.|+++++.
T Consensus 15 ~~~C~IC~~~~~~~--~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 15 VLECPICMESFTEE--QLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCBCTTTCCBCCTT--SSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCccCCcccccc--CCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 45899999875432 2223333 68999999999765554 36899999999853
No 37
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=78.80 E-value=1.2 Score=44.40 Aligned_cols=48 Identities=13% Similarity=0.065 Sum_probs=36.6
Q ss_pred CCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccc
Q 003929 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
..-.|.||.+-. -++.+. .||.-.||.|-+--.+++...||.|++++.
T Consensus 207 ~~~~c~i~~~~~-----~dPv~~--~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELM-----REPCIT--PSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBC-----SSEEEC--SSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cccCCcCcCCHh-----cCCeEC--CCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 455899998652 234443 489999999998777777677999999884
No 38
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=77.42 E-value=1.5 Score=43.37 Aligned_cols=47 Identities=13% Similarity=0.011 Sum_probs=36.2
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
.-+|.||++- +. ++.+. .||+-.||.|-+--.+.+...||.|++++.
T Consensus 106 ~f~CPI~~el-m~----DPV~~--~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 106 YLCGKISFEL-MR----EPCIT--PSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGBCTTTCSB-CS----SEEEC--TTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred hhcccCcccc-CC----CCeEC--CCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 4489999864 33 46666 499999999998777664457999999884
No 39
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.27 E-value=2.3 Score=34.97 Aligned_cols=48 Identities=25% Similarity=0.837 Sum_probs=35.0
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhh-----CCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERRE-----GNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErke-----G~q~CPqCkt~Ykr 90 (786)
...|.||-+.+.- +. .. .|+-..|+.|..--.+. +...||.|++++..
T Consensus 19 ~~~C~IC~~~~~~-----p~-~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLTQ-----PL-SL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCSS-----CB-CC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccCC-----ce-eC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4589999987531 22 22 58889999999654333 57899999999853
No 40
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=77.05 E-value=2.9 Score=33.37 Aligned_cols=49 Identities=24% Similarity=0.518 Sum_probs=34.3
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~ 91 (786)
...|.||-+...- ... .-.|+--.|+.|..--.+ .+..||-|++++...
T Consensus 5 ~~~C~IC~~~~~~---~~~---~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 5 AERCPICLEDPSN---YSM---ALPCLHAFCYVCITRWIR-QNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCSSCCSCCCS---CEE---ETTTTEEESTTHHHHHHH-HSCSTTTTCCCCCCE
T ss_pred CCCCeeCCccccC---CcE---ecCCCCeeHHHHHHHHHh-CcCcCcCCChhhHhh
Confidence 4589999988531 112 235788899999965443 448999999998643
No 41
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=76.80 E-value=2.3 Score=34.96 Aligned_cols=48 Identities=29% Similarity=0.802 Sum_probs=35.1
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhh-----CCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERRE-----GNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErke-----G~q~CPqCkt~Ykr 90 (786)
...|.||-+.+.- + +.. .|+--.|+.|.+--.+. +...||.|++++..
T Consensus 19 ~~~C~IC~~~~~~-----p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKE-----P-VSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSS-----C-EEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCc-----c-eeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4589999887532 2 223 58889999999765444 47899999998853
No 42
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=76.68 E-value=2 Score=37.57 Aligned_cols=47 Identities=23% Similarity=0.599 Sum_probs=37.7
Q ss_pred ccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccc
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
..|.||-+.+- .-|.|-.|+--.|+.|..--.+.....||.|++++.
T Consensus 23 ~~C~IC~~~~~------~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 23 FRCFICMEKLR------DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp TBCTTTCSBCS------SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCccCCcccc------CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 48999998863 245566899999999997666666579999999984
No 43
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=76.13 E-value=3 Score=33.44 Aligned_cols=52 Identities=23% Similarity=0.490 Sum_probs=36.1
Q ss_pred CCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccc
Q 003929 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~ 91 (786)
....|.||-+.+. +++..+.- .|+--.|+.|..--.+. +..||-|+++....
T Consensus 13 ~~~~C~IC~~~~~---~~~~~~~~-~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 13 TEEKCTICLSILE---EGEDVRRL-PCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp CCCSBTTTTBCCC---SSSCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CCCCCeeCCcccc---CCCcEEEe-CCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 4568999998764 23333333 58888999999544433 46799999988543
No 44
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=75.82 E-value=0.52 Score=45.65 Aligned_cols=51 Identities=22% Similarity=0.494 Sum_probs=43.2
Q ss_pred CCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccc
Q 003929 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~ 87 (786)
+...|.+|+...|+- +..-+.|..|...||+.|-.|-++++.=.|--|-..
T Consensus 67 ~~~~C~~C~~~fg~l--~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLL--LNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGC--SSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccc--cCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 567999999998876 334789999999999999998888888888877554
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=73.42 E-value=1.2 Score=39.54 Aligned_cols=48 Identities=27% Similarity=0.784 Sum_probs=36.6
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
.-.|.||-+..- ++.+. .|+--.|+.|..--.+.++..||.|++++..
T Consensus 15 ~~~C~iC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV-----EPVTL--PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS-----SCEEC--TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC-----ceeEc--CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 348999997753 23332 6899999999976666777899999999853
No 46
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=71.44 E-value=2.6 Score=37.84 Aligned_cols=47 Identities=23% Similarity=0.524 Sum_probs=36.2
Q ss_pred ccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
-.|.||.+.+- ++ |.. .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 19 ~~C~IC~~~~~-----~p-~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCcCChhhc-----Ce-EEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 48999997753 23 334 6899999999987777776799999988853
No 47
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.42 E-value=5.1 Score=32.62 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=35.2
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~ 91 (786)
...|.||-+.+.- +. ....|+--.|+.|..--.+. +..||.|++++...
T Consensus 15 ~~~C~IC~~~~~~-----p~-~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLID-----AT-TITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSS-----CE-ECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHC-----cC-EECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcc
Confidence 4589999876432 22 22367888899999665544 68999999999653
No 48
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=71.09 E-value=3.4 Score=35.65 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=34.7
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
...|.||-+...- +.+ ...|+--.|+.|.+--.+ .+..||.|++++..
T Consensus 22 ~~~C~IC~~~~~~-----p~~-~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI-----AMI-IPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS-----EEE-CTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC-----cCE-ECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 3489999887531 322 236899999999965544 45899999999853
No 49
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=69.99 E-value=2 Score=47.19 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=26.3
Q ss_pred CcchhhhHHHHHhhcccCCCCEEEEecCCCCCC
Q 003929 549 HKKAGAMNALIRVSAVISNAPYLLNVDCDHYIN 581 (786)
Q Consensus 549 h~KAGALN~lLrvSa~~TngpfILnLDaD~yin 581 (786)
..|+++|=.++.... +..++||-.+|||-|+|
T Consensus 142 ~GKGegmi~Gi~~Ak-~~~geYVgFvDADdyi~ 173 (391)
T 2wvl_A 142 SGKAEGMILALVFAA-LSGRRYVGFIDADNYFP 173 (391)
T ss_dssp CSHHHHHHHHHHHHH-HTTCSEEEECCSCBSCH
T ss_pred ccchHHHHHHHHHHH-hcCCCEEEEEcCcCCCc
Confidence 479999999887642 34899999999999974
No 50
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=69.41 E-value=1.2 Score=44.50 Aligned_cols=29 Identities=34% Similarity=0.669 Sum_probs=22.6
Q ss_pred cCCccccccCcccccc----CCCCceeecCCCCCCcchhhhHH
Q 003929 34 LSGQICQICGDEIEIT----DNGEPFVACNECAFPVCRPCYEY 72 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~----~~Ge~FvAC~eC~FpVCRpCYey 72 (786)
...-+|++||+.|+-+ .||. +||++|++.
T Consensus 170 ~~~~~C~~CGE~~~~~~~~~~~g~----------~~C~~C~~~ 202 (204)
T 2gvi_A 170 GAKVRCDVCGEYTYEADAKLLNGK----------PVCKPDYYG 202 (204)
T ss_dssp CCEEECTTTCCEEEGGGCEEETTE----------EECHHHHHC
T ss_pred CCceECCCCCCchhhcceeeeCCc----------EEChhhhcc
Confidence 3456899999998875 4565 789999964
No 51
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=69.38 E-value=2.1 Score=40.55 Aligned_cols=38 Identities=24% Similarity=0.626 Sum_probs=30.7
Q ss_pred ccCCccccccCccccccC-CCCceeecCCCCCCcchhhhHHH
Q 003929 33 ELSGQICQICGDEIEITD-NGEPFVACNECAFPVCRPCYEYE 73 (786)
Q Consensus 33 ~~~~~~CqiCgd~Vg~~~-~Ge~FvAC~eC~FpVCRpCYeyE 73 (786)
+.+...|.+|+...|+-. .| +.|..|...||+-|-.+-
T Consensus 52 ~~~~~~C~~C~~~~g~l~~~g---~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSAS---VVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCE---EECTTTCCEEETTSEEEC
T ss_pred cCCCccccccCCCcccccCCC---CCCCCCCcccccccCCcc
Confidence 346679999999997543 34 889999999999998654
No 52
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.23 E-value=2.7 Score=34.43 Aligned_cols=52 Identities=17% Similarity=0.445 Sum_probs=36.5
Q ss_pred CCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccc
Q 003929 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~ 91 (786)
....|.||-+.+.. ++..+.- .|+--.|+.|..--.+. +..||-|+.++...
T Consensus 22 ~~~~C~IC~~~~~~---~~~~~~l-~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFES---RQLLRVL-PCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCB---TCEEEEE-TTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCC---CCeEEEE-CCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 45689999988643 4433333 57888999999644443 57999999887543
No 53
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=68.36 E-value=3.7 Score=38.87 Aligned_cols=47 Identities=23% Similarity=0.692 Sum_probs=35.8
Q ss_pred ccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
..|.||-+.+- ++.+ -.|+--.|+.|.+--.+.++..||.|++++..
T Consensus 79 ~~C~IC~~~~~-----~pv~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVT--TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCS-----SEEE--CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhc-----CCEE--cCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 48999988642 2333 27888899999977777776799999999853
No 54
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=66.99 E-value=3.6 Score=35.25 Aligned_cols=46 Identities=7% Similarity=-0.094 Sum_probs=34.6
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
.-+|.||++- +. ++.+. .||.-.||.|-+--.+ ++..||.|++++.
T Consensus 14 ~~~CpI~~~~-m~----dPV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 14 EFRDPLMDTL-MT----DPVRL--PSGTVMDRSIILRHLL-NSPTDPFNRQMLT 59 (85)
T ss_dssp TTBCTTTCSB-CS----SEEEC--TTSCEEEHHHHHHHHH-HCSBCTTTCCBCC
T ss_pred heECcccCch-hc----CCeEC--CCCCEECHHHHHHHHh-cCCCCCCCcCCCC
Confidence 4589999864 33 24443 3899999999977666 4689999999884
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=66.92 E-value=3.4 Score=36.71 Aligned_cols=46 Identities=7% Similarity=-0.089 Sum_probs=34.7
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
.-.|.||++- +. ++.+. .||.-.||.|-+--.+ ++..||.|+.++.
T Consensus 29 ~~~CpI~~~~-m~----dPV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 29 EFRDPLMDTL-MT----DPVRL--PSGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTBCTTTCSB-CS----SEEEE--TTTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred hhCCcCccCc-cc----CCeEC--CCCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 4589999763 33 35444 3899999999976665 5789999999884
No 56
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=66.41 E-value=3.8 Score=35.19 Aligned_cols=49 Identities=22% Similarity=0.568 Sum_probs=35.4
Q ss_pred CCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccc
Q 003929 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Y 88 (786)
....|.||-+.+. +|+..+.. .|+--.|+.|..--. ..+..||-|+.++
T Consensus 39 ~~~~C~IC~~~~~---~~~~~~~l-~C~H~Fh~~Ci~~wl-~~~~~CP~Cr~~~ 87 (91)
T 2l0b_A 39 QEMCCPICCSEYV---KGDVATEL-PCHHYFHKPCVSIWL-QKSGTCPVCRCMF 87 (91)
T ss_dssp SCSEETTTTEECC---TTCEEEEE-TTTEEEEHHHHHHHH-TTTCBCTTTCCBS
T ss_pred CCCCCcccChhhc---CCCcEEec-CCCChHHHHHHHHHH-HcCCcCcCcCccC
Confidence 3458999998764 35554444 488889999985433 4567999999876
No 57
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.13 E-value=6 Score=33.33 Aligned_cols=55 Identities=20% Similarity=0.465 Sum_probs=37.9
Q ss_pred CCccccccCcccccc--------CCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 35 SGQICQICGDEIEIT--------DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~--------~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
....|.||-+++.-. ..++..+.-..|+=-.|+.|.+-=.+ .++.||-|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcch
Confidence 455899999987542 23443333337888999999854433 34799999998854
No 58
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=64.98 E-value=8.4 Score=31.61 Aligned_cols=49 Identities=24% Similarity=0.596 Sum_probs=35.0
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhh-CCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERRE-GNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErke-G~q~CPqCkt~Ykr 90 (786)
...|.||-+.+. ++.+ -..|+--.|+.|.+--.+. +...||.|++++.+
T Consensus 15 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 15 ELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGSCSSSCCCCT-----TCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCcCCChHHh-----CCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 458999977643 2322 3348999999999766554 45799999997644
No 59
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=64.52 E-value=3.8 Score=37.49 Aligned_cols=48 Identities=29% Similarity=0.836 Sum_probs=33.7
Q ss_pred cccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccc
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~ 91 (786)
.|.+|+-.|-+- |. .++| .=-.|-.|+..-.+++.+.||.|+.+..|.
T Consensus 3 fC~~C~~Pi~iy--gR-mIPC---kHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKVY--GR-MIPC---KHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSEE--EE-EETT---CCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEEE--ee-eccc---cccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 566666554332 22 2333 446699999877889999999999999776
No 60
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.29 E-value=9.6 Score=31.56 Aligned_cols=46 Identities=24% Similarity=0.515 Sum_probs=34.1
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
...|.||-+.+.- +.+ -.|+--.|+.|..--.+ .+..||.|++++.
T Consensus 15 ~~~C~IC~~~~~~-----p~~--~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 15 PFRCFICRQAFQN-----PVV--TKCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81)
T ss_dssp CSBCSSSCSBCCS-----EEE--CTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred CCCCcCCCchhcC-----eeE--ccCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence 4589999887621 333 26888889999965554 3689999999984
No 61
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.18 E-value=8.2 Score=31.29 Aligned_cols=50 Identities=18% Similarity=0.541 Sum_probs=35.8
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
...|.||-+.+.. ++..+.. .|+-..|+.|..--.+. +..||-|++++..
T Consensus 15 ~~~C~IC~~~~~~---~~~~~~~-~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 15 HELCAVCLEDFKP---RDELGIC-PCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ 64 (74)
T ss_dssp SCBCSSSCCBCCS---SSCEEEE-TTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred CCCCcCCCcccCC---CCcEEEc-CCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence 5589999998543 3334433 58888999999644444 4699999998854
No 62
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=64.16 E-value=5 Score=35.23 Aligned_cols=48 Identities=21% Similarity=0.606 Sum_probs=34.9
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
.-.|.||.+..- ++.+ ...|+--.|+.|..--.+. +..||.|++.+..
T Consensus 15 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFI-----DATT-IIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCS-----SEEE-ETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred cCCCccCChHHh-----CcCE-eCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 348999988752 2333 2368999999999655554 4899999999853
No 63
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=63.50 E-value=5.6 Score=34.67 Aligned_cols=47 Identities=30% Similarity=0.683 Sum_probs=33.5
Q ss_pred ccccccCccccccCCCCceeecCCCCCCcchhhhHHHHh--hCCCcCCCCcccccc
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR--EGNQACPQCKTRYKR 90 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErk--eG~q~CPqCkt~Ykr 90 (786)
..|.||-+.+- ++.+ . .|+--.|+.|..--.+ .+...||.|++++..
T Consensus 22 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIK-----EPVS-T-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCS-----SCCB-C-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhc-----CeEE-C-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 48999988652 1222 2 6888999999975554 344689999998853
No 64
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=63.22 E-value=4.3 Score=38.45 Aligned_cols=47 Identities=23% Similarity=0.524 Sum_probs=37.4
Q ss_pred ccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
-.|.||.+.+- ++ |.+ .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 19 ~~C~IC~~~~~-----~p-v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCChhhc-----Cc-EEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 38999998743 23 446 7999999999988777777799999988753
No 65
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=63.16 E-value=5.9 Score=35.11 Aligned_cols=48 Identities=25% Similarity=0.552 Sum_probs=36.8
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
...|.||-+.+- ++.+ . .|+--.|+.|..--.+.++..||.|+.++..
T Consensus 23 ~~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILA-----DPVE-T-SCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCS-----SEEE-C-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhc-----CcEE-c-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 348999987752 2333 3 7899999999977777767899999999854
No 66
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=62.38 E-value=5.1 Score=36.90 Aligned_cols=45 Identities=29% Similarity=0.647 Sum_probs=32.1
Q ss_pred cccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
.|.||-+..- ++ |.. .|+--.|+.|..--. ..+..||.|+++.+.
T Consensus 55 ~C~iC~~~~~-----~~-~~~-~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 55 QCIICSEYFI-----EA-VTL-NCAHSFCSYCINEWM-KRKIECPICRKDIKS 99 (138)
T ss_dssp BCTTTCSBCS-----SE-EEE-TTSCEEEHHHHHHHT-TTCSBCTTTCCBCCC
T ss_pred CCcccCcccC-----Cc-eEC-CCCCCccHHHHHHHH-HcCCcCCCCCCcCCC
Confidence 6999988752 12 223 578889999985433 345789999998853
No 67
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.31 E-value=6.1 Score=32.05 Aligned_cols=49 Identities=18% Similarity=0.391 Sum_probs=34.5
Q ss_pred cCCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 34 LSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
.....|.||-+.+.. . +.+ .|+--.|+.|..--.+. +..||-|+.++..
T Consensus 13 ~~~~~C~IC~~~~~~---~-~~~---~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVH---P-VSL---PCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSS---E-EEE---TTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCC---C-EEc---cCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 445689999987521 1 233 47888999999643343 4899999999864
No 68
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.11 E-value=7.3 Score=30.68 Aligned_cols=42 Identities=31% Similarity=0.764 Sum_probs=31.2
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhh--CCCcCCCC
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERRE--GNQACPQC 84 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErke--G~q~CPqC 84 (786)
...|.||-+.+- ++.+. .|+--.|+.|.+--.+. ++..||.|
T Consensus 20 ~~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCS-----SCEEC--TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCchhC-----CeEEe--CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 458999988753 23332 68999999999766654 66789988
No 69
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.37 E-value=5.2 Score=35.76 Aligned_cols=45 Identities=24% Similarity=0.485 Sum_probs=33.2
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
.-.|.||-+... ++.+.. .|+--.|+.|..--.+ ..||.|++++.
T Consensus 22 ~~~C~IC~~~~~-----~pv~~~-~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILR-----EPVCLG-GCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCS-----SCBCCC-SSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhh-----CccEeC-CCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 458999987652 343333 6899999999965444 78999999984
No 70
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=60.46 E-value=4.2 Score=40.47 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=21.5
Q ss_pred cCCccccccCccccccCCCCceeecCCCCCCcchhhhH
Q 003929 34 LSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYE 71 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYe 71 (786)
...-+|++||+.|+-. +=+||++|++
T Consensus 161 ~~~~~C~~CGE~~~~~------------g~~~C~~C~~ 186 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQ------------DGELCLSCQG 186 (191)
T ss_dssp CCEEECTTTCCEEEGG------------GCSSCHHHHT
T ss_pred cCCEECCcCCCChhhC------------CCcCCccccC
Confidence 4667999999998865 5589999984
No 71
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=60.21 E-value=5.8 Score=35.05 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=34.3
Q ss_pred CccccccCccccccCCCCceeecCCCC-CCcchhhhHHHHhhCCCcCCCCccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECA-FPVCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~-FpVCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
.-+|.||.+- +. ++.+. .|+ .-.||.|.+--.++ +..||.|++++.
T Consensus 22 ~~~CpI~~~~-m~----dPV~~--~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~ 68 (98)
T 1wgm_A 22 EFLDPIMSTL-MC----DPVVL--PSSRVTVDRSTIARHLLS-DQTDPFNRSPLT 68 (98)
T ss_dssp TTBCTTTCSB-CS----SEEEC--TTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred hcCCcCcccc-cc----CCeEC--CCCCeEECHHHHHHHHHh-CCCCCCCCCCCC
Confidence 4489999763 33 24443 478 99999999776665 689999999884
No 72
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=60.15 E-value=5.5 Score=33.74 Aligned_cols=48 Identities=23% Similarity=0.587 Sum_probs=34.2
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHh-hCCCcCCCCccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR-EGNQACPQCKTRYK 89 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErk-eG~q~CPqCkt~Yk 89 (786)
.-.|.||.+..- ++.+ -..|+--.|+.|.+--.+ .+...||.|++++.
T Consensus 13 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 13 ELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTEETTTTEECS-----SCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCCCCCCChhhc-----CceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 458999997642 2322 223899999999975544 35579999999873
No 73
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.79 E-value=5.8 Score=31.83 Aligned_cols=47 Identities=23% Similarity=0.624 Sum_probs=34.4
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~ 91 (786)
...|.||-+.... ...+ |+--.|+.|..- .-..+..||-|++++...
T Consensus 15 ~~~C~IC~~~~~~-----~~~~---CgH~fc~~Ci~~-~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 15 EEECCICMDGRAD-----LILP---CAHSFCQKCIDK-WSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCSSSCCSCCS-----EEET---TTEEECHHHHHH-SSCCCSSCHHHHHCTTCC
T ss_pred CCCCeeCCcCccC-----cccC---CCCcccHHHHHH-HHHCcCcCCCcCCcccCC
Confidence 4589999887432 4444 677789999954 334789999999998643
No 74
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=58.42 E-value=3.1 Score=34.07 Aligned_cols=48 Identities=29% Similarity=0.811 Sum_probs=34.1
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhh------CCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERRE------GNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErke------G~q~CPqCkt~Ykr 90 (786)
...|.||-+...- +.+ . .|+--.|+.|..--.+. +...||.|++++..
T Consensus 12 ~~~C~IC~~~~~~-----p~~-l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLTE-----PLS-L-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECSS-----CCC-C-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccCC-----eeE-C-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4589999987521 222 2 68889999999644333 36899999999853
No 75
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.53 E-value=5.5 Score=34.06 Aligned_cols=47 Identities=26% Similarity=0.757 Sum_probs=34.0
Q ss_pred ccccccCccccccCCCCceeecCCCCCCcchhhhHHH-HhhCCCcCCCCccccc
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKTRYK 89 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyE-rkeG~q~CPqCkt~Yk 89 (786)
..|.||-+.|.. | ..|..|+-..=..|..-= +..++..||.|++...
T Consensus 16 ~~C~IC~~~i~~---g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSS---S---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhhHccc---C---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 489999999863 3 467777766667787432 4445689999998874
No 76
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=56.01 E-value=6.4 Score=34.81 Aligned_cols=54 Identities=26% Similarity=0.662 Sum_probs=40.0
Q ss_pred CCccccccCcccccc-CCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 35 SGQICQICGDEIEIT-DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~-~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
....|.||-+.+... +.+...+.+ .|+-..|..|.+--.+. +..||.|++.+..
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 455899999886543 345555655 89999999999655544 4799999999853
No 77
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=54.23 E-value=6.1 Score=44.71 Aligned_cols=36 Identities=17% Similarity=0.421 Sum_probs=30.3
Q ss_pred cCCccccccCccc-cccCCCCceeecCCCCCCcchhhhHH
Q 003929 34 LSGQICQICGDEI-EITDNGEPFVACNECAFPVCRPCYEY 72 (786)
Q Consensus 34 ~~~~~CqiCgd~V-g~~~~Ge~FvAC~eC~FpVCRpCYey 72 (786)
.....|..|++-+ |+.-.| ..|..|+|.||+-|...
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg---~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQG---YRCHRCRASAHKECLGR 563 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCE---EEETTTCCEECSGGGGG
T ss_pred CCCcccccccccccccccCC---cCCCCCCCccchhhhhc
Confidence 3456999999997 876666 78999999999999965
No 78
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=53.81 E-value=8 Score=32.57 Aligned_cols=30 Identities=27% Similarity=0.590 Sum_probs=23.8
Q ss_pred cCCccccccCccccccCCCCceeecCCCCCCc
Q 003929 34 LSGQICQICGDEIEITDNGEPFVACNECAFPV 65 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpV 65 (786)
.-.-+|.-||.++.+... .-+-|.+|++.|
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~--~~iRC~~CG~RI 48 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAK--EVIRCRECGHRV 48 (63)
T ss_dssp CCCCBCSSSCCBCCCCSS--SCCCCSSSCCCC
T ss_pred CeEEECCCCCCeeecCCC--CceECCCCCcEE
Confidence 345699999999998853 338899999876
No 79
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=51.82 E-value=13 Score=33.53 Aligned_cols=54 Identities=22% Similarity=0.333 Sum_probs=36.2
Q ss_pred CCccccccCcccccc----------CCCC-ceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccc
Q 003929 35 SGQICQICGDEIEIT----------DNGE-PFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~----------~~Ge-~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
....|.||-+.+... ..|+ .-+.--.|+---++.|..-= -..+..||-|+..++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~W-l~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW-LKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHH-HTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHH-HHcCCcCcCCCCcce
Confidence 456899998886643 1122 12233378999999998443 345789999999964
No 80
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=51.38 E-value=6.3 Score=34.86 Aligned_cols=54 Identities=26% Similarity=0.639 Sum_probs=39.3
Q ss_pred CCccccccCccccccC-CCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccccc
Q 003929 35 SGQICQICGDEIEITD-NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~-~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
+...|.||-+...-.. +|+..+.- .|+--.|+.|.+--.+. +..||.|+..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence 3458999998865432 45544554 78999999999655554 4699999999854
No 81
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.19 E-value=14 Score=30.43 Aligned_cols=45 Identities=22% Similarity=0.651 Sum_probs=32.0
Q ss_pred cCCccccccCccccccCCCCceeecCCCCCC-cchhhhHHHHhhCCCcCCCCcccccc
Q 003929 34 LSGQICQICGDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~Fp-VCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
.....|.||-+.. .--+|++| +=- +|..|..- .+.||-|+++...
T Consensus 13 ~~~~~C~IC~~~~----~~~v~~pC---gH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT----VNWVLLPC---RHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC----CCCEETTT---TBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCC----CCEEEECC---CChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3456899998753 22356676 434 79999972 4899999998854
No 82
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=49.64 E-value=6.4 Score=32.96 Aligned_cols=53 Identities=28% Similarity=0.646 Sum_probs=36.7
Q ss_pred CCccccccCccccccCCCCceeecCCCCCCcchhhhHHHH---hhCCCcCCCCccccccc
Q 003929 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYER---REGNQACPQCKTRYKRI 91 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyEr---keG~q~CPqCkt~Ykr~ 91 (786)
....|.+|+.. .+|+..|.|..|.--.=-.|..... .++.-.||.|...-++.
T Consensus 17 ~~~~C~~C~~~----~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKP----DDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBC----CSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCC----CCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 34589999876 4688999999885443345554332 24788999998876543
No 83
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=49.38 E-value=11 Score=38.52 Aligned_cols=48 Identities=25% Similarity=0.718 Sum_probs=38.7
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHH-HhhCCCcCCCCccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKTRYK 89 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyE-rkeG~q~CPqCkt~Yk 89 (786)
-..|++|-+-|.. | +.|..|+-..=+.|+.-- +..++..||.|++...
T Consensus 180 i~~C~iC~~iv~~---g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSS---C---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhC---C---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 5689999999885 2 889889999999999654 4445679999999874
No 84
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=48.95 E-value=8.8 Score=41.04 Aligned_cols=35 Identities=20% Similarity=0.494 Sum_probs=29.0
Q ss_pred cCCccccccCccc-cccCCCCceeecCCCCCCcchhhhH
Q 003929 34 LSGQICQICGDEI-EITDNGEPFVACNECAFPVCRPCYE 71 (786)
Q Consensus 34 ~~~~~CqiCgd~V-g~~~~Ge~FvAC~eC~FpVCRpCYe 71 (786)
.....|..|+.-+ |+...| ..|..|++.||+.|..
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg---~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQG---YRCYRCRAPAHKECLG 390 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCE---EEETTTCCEECGGGGG
T ss_pred CCCCCCccccchhceeCCCC---CCCCCCcCccchhhhh
Confidence 3456999999997 676555 6799999999999995
No 85
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=48.60 E-value=11 Score=41.41 Aligned_cols=48 Identities=25% Similarity=0.683 Sum_probs=33.6
Q ss_pred ccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccc
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~ 91 (786)
..|.||-+..- + -... .|+=-.|+.|..--.+.+...||-|+++....
T Consensus 333 ~~C~ICle~~~---~-pv~l---pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDK---D-VKIE---PCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBC---C-EEEE---TTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCccCcCCC---C-eEEe---CCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 58999977641 1 1234 45666699999654554778999999988653
No 86
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=48.36 E-value=8.3 Score=45.76 Aligned_cols=58 Identities=29% Similarity=0.754 Sum_probs=42.3
Q ss_pred cCCccccccCccccccCC---CCceeecCCCC--------------------CCcchhhhH-HH----Hh--hCCCcCCC
Q 003929 34 LSGQICQICGDEIEITDN---GEPFVACNECA--------------------FPVCRPCYE-YE----RR--EGNQACPQ 83 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~~---Ge~FvAC~eC~--------------------FpVCRpCYe-yE----rk--eG~q~CPq 83 (786)
....+|.-|=.++---.| .=+|+.|..|| ||.|..|.. |+ || ----+||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 445689999988753333 55899999998 999999973 44 33 12258999
Q ss_pred Cccccccc
Q 003929 84 CKTRYKRI 91 (786)
Q Consensus 84 Ckt~Ykr~ 91 (786)
|+=++.-.
T Consensus 189 CGP~l~l~ 196 (761)
T 3vth_A 189 CGPSLSFV 196 (761)
T ss_dssp TSCCEEEE
T ss_pred cCCeeEEe
Confidence 99988543
No 87
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=47.13 E-value=14 Score=28.81 Aligned_cols=45 Identities=24% Similarity=0.589 Sum_probs=32.0
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRI 91 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~ 91 (786)
...|.||-+..-. -... .|+--.|+.|..- ....||.|++.....
T Consensus 6 ~~~C~IC~~~~~~----p~~l---~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQCQAEAKC----PKLL---PCLHTLCSGCLEA----SGMQCPICQAPWPLG 50 (56)
T ss_dssp CSSCSSSCSSCBC----CSCS---TTSCCSBTTTCSS----SSSSCSSCCSSSSCC
T ss_pred CCCceEeCCccCC----eEEc---CCCCcccHHHHcc----CCCCCCcCCcEeecC
Confidence 3479999886531 1223 4677789999743 678999999988654
No 88
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=46.76 E-value=7.3 Score=32.16 Aligned_cols=50 Identities=22% Similarity=0.614 Sum_probs=36.2
Q ss_pred ccccCCccccccCccccccCCCCceeecCCCCCCcchhhhHH---HHhhCCCcCCCCccc
Q 003929 31 VKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKTR 87 (786)
Q Consensus 31 ~~~~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYey---ErkeG~q~CPqCkt~ 87 (786)
+...+...|.+|++. | ..+.|..|.-..=..|+.- +.-+|.-.||.|...
T Consensus 3 ~~~~~~~~C~vC~~~------g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 3 MAQKNEDECAVCRDG------G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCCSCCCSBSSSSCC------S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred cCCCCCCCCccCCCC------C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 445567799999973 3 5788999976666677752 244688899999754
No 89
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=46.11 E-value=6.9 Score=33.18 Aligned_cols=56 Identities=25% Similarity=0.564 Sum_probs=42.4
Q ss_pred cccccCCccccccCccccccCCCCceeecCCCCCCcchhhhHHH-HhhCCCcCCCCccc
Q 003929 30 SVKELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKTR 87 (786)
Q Consensus 30 ~~~~~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyE-rkeG~q~CPqCkt~ 87 (786)
+....+...|.||++. -..+++..+.|..|.-.+=..||.-. .-+|.=.||.|...
T Consensus 10 ~~~~~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 10 QSLIDEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCCCCSSCSCSSSCCC--CCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCCCCCCCCCC--CCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4445567799999874 23466788999999888888898654 44788999999753
No 90
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=45.72 E-value=2.2 Score=36.35 Aligned_cols=44 Identities=23% Similarity=0.545 Sum_probs=32.4
Q ss_pred eeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccccCCCCCCCCCCC
Q 003929 55 FVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEEE 103 (786)
Q Consensus 55 FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~kGsprV~Gd~ee 103 (786)
..+| |+|+.=.+|...+|.-.|+.|+..|--..|-|..--||..
T Consensus 8 iL~C-----P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear 51 (70)
T 2js4_A 8 ILVC-----PVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEAEAR 51 (70)
T ss_dssp CCBC-----TTTCCBEEEETTTTEEEETTTTEEEEEETTEECCCGGGSE
T ss_pred heEC-----CCCCCcCEEeCCCCEEEcCCCCceecCCCCeeeeChhhcc
Confidence 4566 5555545566667888999999999999888877666543
No 91
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=44.99 E-value=7.4 Score=36.45 Aligned_cols=45 Identities=22% Similarity=0.621 Sum_probs=35.9
Q ss_pred ccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccc
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Y 88 (786)
-.|.||.+-+- ++ |.. .|+--.|+.|..--.+.++..||.|+++.
T Consensus 32 ~~C~IC~~~~~-----~p-v~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 32 YLCSACRNVLR-----RP-FQA-QCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCCCCChhhc-----Cc-EEC-CCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 48999987642 23 334 89999999999887788888999999875
No 92
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=44.21 E-value=10 Score=30.71 Aligned_cols=48 Identities=21% Similarity=0.456 Sum_probs=33.2
Q ss_pred cCCccccccCccccccCCCCcee--ecCCCCCC-cchhhhHHHHhhCCCcCCCCccccc
Q 003929 34 LSGQICQICGDEIEITDNGEPFV--ACNECAFP-VCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~~Ge~Fv--AC~eC~Fp-VCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
.....|.||-+...- -+|+ +| +-- .|..|.+--. ..+..||-|+.+..
T Consensus 6 ~~~~~C~IC~~~~~~----~~~~~~pC---gH~~~C~~C~~~~~-~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN----GCIVHGKT---GHLMACFTCAKKLK-KRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC----EEEEETTE---EEEEECHHHHHHHH-HTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC----EEEECCCC---CChhhHHHHHHHHH-HcCCcCCCcCcchh
Confidence 345689999886321 1455 54 655 6999997544 45678999999875
No 93
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=43.59 E-value=8.1 Score=33.89 Aligned_cols=54 Identities=26% Similarity=0.591 Sum_probs=41.0
Q ss_pred ccCCccccccCccccccCCCCceeecCCCCCCcchhhhHHH-HhhCCCcCCCCcccc
Q 003929 33 ELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE-RREGNQACPQCKTRY 88 (786)
Q Consensus 33 ~~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyE-rkeG~q~CPqCkt~Y 88 (786)
..+...|.||++. -..+++..+-|..|.-.+=..||.-. .-+|.=.||.|...-
T Consensus 22 ~~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 22 IDEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCCSSCCSS--SSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCCcCCcCCCC--CCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 3466799999964 22456789999999887778898643 457899999997653
No 94
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.30 E-value=14 Score=30.50 Aligned_cols=43 Identities=33% Similarity=0.731 Sum_probs=30.0
Q ss_pred CccccccCccccccCCCCceeecCCCCCC-cchhhhHHHHhhCCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~Fp-VCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
...|.||-+..- --++++ |+-- .|+.|.+ ....||-|+++...
T Consensus 25 ~~~C~IC~~~~~----~~~~~p---CgH~~~C~~C~~-----~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVP---CGHLVTCKQCAE-----AVDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSS---SCCCCBCHHHHH-----HCSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCC----CEEEec---CCCHHHHHHHhh-----CCCCCccCCceecC
Confidence 347999987631 123445 5666 7999984 24899999998854
No 95
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=42.13 E-value=18 Score=32.57 Aligned_cols=24 Identities=25% Similarity=0.112 Sum_probs=16.6
Q ss_pred CcchhhhHHHHhhCC-CcCCCCccccc
Q 003929 64 PVCRPCYEYERREGN-QACPQCKTRYK 89 (786)
Q Consensus 64 pVCRpCYeyErkeG~-q~CPqCkt~Yk 89 (786)
|.|+.||.- +-+. ..|-.|+.+-.
T Consensus 56 ~yC~~cy~~--~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 56 ILCRNDYIR--LFGNSGAGGSGGHMGS 80 (122)
T ss_dssp EECHHHHHH--HHCCCCSSSCSSCCSC
T ss_pred eecHHHHHH--HcCCCCccccCCCCcC
Confidence 459999843 3443 37999998763
No 96
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=41.77 E-value=15 Score=33.00 Aligned_cols=46 Identities=24% Similarity=0.515 Sum_probs=27.9
Q ss_pred ccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCC-CcCCCCcccc
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGN-QACPQCKTRY 88 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~-q~CPqCkt~Y 88 (786)
-.|..|+..+. ..|..|+.= =+-|.|+.||.- +-+. ..|..|+++.
T Consensus 30 F~C~~C~~~L~--~~~~~~~~~--~g~~yC~~~y~~--~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 30 LSCDLCGCRLG--EVGRRLYYK--LGRKLCRRDYLR--LFGQDGLCASCDKRI 76 (131)
T ss_dssp CBCTTTCCBCS--STTCCEEEE--TTEEECHHHHHH--HHCCCEECTTTCCEE
T ss_pred cccCcCCCccc--cCCCeEEEE--CCEEeecCchhh--hCCCccChhhcCCcc
Confidence 36777777653 223333321 145789999943 2332 4899999876
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=40.93 E-value=21 Score=32.15 Aligned_cols=51 Identities=24% Similarity=0.556 Sum_probs=39.2
Q ss_pred CccccccCcccc--ccCCCCceeecCCCCCCcchhhhHH------HHhhCCCcCCCCcc
Q 003929 36 GQICQICGDEIE--ITDNGEPFVACNECAFPVCRPCYEY------ERREGNQACPQCKT 86 (786)
Q Consensus 36 ~~~CqiCgd~Vg--~~~~Ge~FvAC~eC~FpVCRpCYey------ErkeG~q~CPqCkt 86 (786)
..+|.+|...=. .+.+++.++.|..|+-..=..|..+ ..++++=.||.|++
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 63 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT 63 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc
Confidence 458999976533 3356778999999988887788864 35788999999984
No 98
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.54 E-value=39 Score=25.65 Aligned_cols=42 Identities=21% Similarity=0.670 Sum_probs=30.0
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhh--CCCcCCCC
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERRE--GNQACPQC 84 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErke--G~q~CPqC 84 (786)
...|.||-+.+.- . ... .|+--.|+.|..--.+. ++..||.|
T Consensus 15 ~~~C~IC~~~~~~---p-~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKE---P-VII---ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSS---C-CCC---SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcccCc---c-EeC---CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4589999988532 1 222 57888899999665443 77899988
No 99
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=40.18 E-value=9.7 Score=30.52 Aligned_cols=31 Identities=26% Similarity=0.745 Sum_probs=25.9
Q ss_pred CccccccCccccccCCCCceeecCCC-CCCcchhhhHH
Q 003929 36 GQICQICGDEIEITDNGEPFVACNEC-AFPVCRPCYEY 72 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC-~FpVCRpCYey 72 (786)
+..|..|+..|| .-.-|.+| .|-+|..||.-
T Consensus 6 ~~~Cd~C~~~ig------~R~~C~~C~dyDLC~~C~~~ 37 (52)
T 1tot_A 6 VYTCNECKHHVE------TRWHCTVCEDYDLCINCYNT 37 (52)
T ss_dssp CEEETTTTEEES------SEEEESSSSSCEECHHHHHH
T ss_pred EEECCCCCCCCc------ceEEcCCCCCchhHHHHHhC
Confidence 458999999853 46899999 89999999965
No 100
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=39.99 E-value=2.5 Score=35.82 Aligned_cols=43 Identities=16% Similarity=0.474 Sum_probs=31.5
Q ss_pred eeecCCCCCCcchhhhHHHHhhCCCcCCCCccccccccCCCCCCCCCC
Q 003929 55 FVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEE 102 (786)
Q Consensus 55 FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~kGsprV~Gd~e 102 (786)
..+| |+|+-=.+|.+.+|.-.|+.|+..|--..|-|..--||.
T Consensus 8 iL~C-----P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ea 50 (68)
T 2hf1_A 8 ILVC-----PLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEA 50 (68)
T ss_dssp ECBC-----TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCGGGC
T ss_pred heEC-----CCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeeeChhhc
Confidence 4566 445444556666788899999999999888887766653
No 101
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=38.72 E-value=4.9 Score=36.68 Aligned_cols=31 Identities=16% Similarity=0.549 Sum_probs=20.2
Q ss_pred ceeecCCCCCCcchhhhHHHHhhCCC-cCCCCccccccc
Q 003929 54 PFVACNECAFPVCRPCYEYERREGNQ-ACPQCKTRYKRI 91 (786)
Q Consensus 54 ~FvAC~eC~FpVCRpCYeyErkeG~q-~CPqCkt~Ykr~ 91 (786)
...-|.+|++. ++..+-.. .||.|+.+-.+.
T Consensus 72 ~~~~C~~CG~~-------~e~~~~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 72 VELECKDCSHV-------FKPNALDYGVCEKCHSKNVII 103 (119)
T ss_dssp CEEECSSSSCE-------ECSCCSTTCCCSSSSSCCCEE
T ss_pred ceEEcCCCCCE-------EeCCCCCCCcCccccCCCcEE
Confidence 35667777643 33344456 899999986554
No 102
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=37.96 E-value=22 Score=28.90 Aligned_cols=47 Identities=23% Similarity=0.714 Sum_probs=35.8
Q ss_pred ccCCccccccCccccccCCCCceeecCCCCCCcchhhhHH---HHhhCCCcCCCCcc
Q 003929 33 ELSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKT 86 (786)
Q Consensus 33 ~~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYey---ErkeG~q~CPqCkt 86 (786)
..+...|.+|++ |...+.|..|.-..=-.|..- +.-+|.-.||.|..
T Consensus 8 ~~~~~~C~vC~~-------~g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQ-------GGEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSC-------CSSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCC-------CCcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 445679999997 246788999987777778765 34578899999974
No 103
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.77 E-value=22 Score=29.83 Aligned_cols=62 Identities=23% Similarity=0.574 Sum_probs=34.0
Q ss_pred ccccCCccccccCccccc----cCCCCce----eecCCCCCCcchhhhHHHHhhCCCcCCCCccccccccCCC
Q 003929 31 VKELSGQICQICGDEIEI----TDNGEPF----VACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSP 95 (786)
Q Consensus 31 ~~~~~~~~CqiCgd~Vg~----~~~Ge~F----vAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Ykr~kGsp 95 (786)
.+......|..|+..|.. .+.|..| ..|.+|.-++=.-.|-.-.++|.-. |+.-|.+...+|
T Consensus 10 ~~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~y---C~~~y~~~~~~~ 79 (82)
T 2co8_A 10 QEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHFY---CLQHLPQTDSGP 79 (82)
T ss_dssp CCCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCCE---ETTTCCCCCCCC
T ss_pred cCCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEEE---ChHHHHhhhcCC
Confidence 344556799999999853 3455554 3455555544443331102456544 456666665544
No 104
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=36.00 E-value=4.8 Score=34.08 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=28.3
Q ss_pred CcchhhhHHHHhhCCCcCCCCccccccccCCCCCCCCCC
Q 003929 64 PVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVDGDEE 102 (786)
Q Consensus 64 pVCRpCYeyErkeG~q~CPqCkt~Ykr~kGsprV~Gd~e 102 (786)
|+|+.=.+|...+|.-+|+.|+..|--..|=|..--||.
T Consensus 14 P~ck~~L~~~~~~g~LvC~~c~~~YPI~dGIPvmL~~Ea 52 (67)
T 2jny_A 14 PKDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLLIDEA 52 (67)
T ss_dssp TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCSSCC
T ss_pred CCCCCcCeEeCCCCEEEcCCCCccccCCCCEeeeChhHh
Confidence 444433344445777899999999999999988776653
No 105
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=35.75 E-value=15 Score=31.32 Aligned_cols=25 Identities=24% Similarity=0.828 Sum_probs=15.4
Q ss_pred ccccccCccccccCCCCceeecCCCCC
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAF 63 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~F 63 (786)
-+|.-||-++.+... + -+.|.+|++
T Consensus 29 Y~C~~CG~~~e~~~~-d-~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSRT-D-AVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCTT-S-TTCCSSSCC
T ss_pred EECCCCCCcceeCCC-C-CccCCCCCc
Confidence 478888888776632 2 235666665
No 106
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=35.22 E-value=11 Score=44.69 Aligned_cols=58 Identities=40% Similarity=0.838 Sum_probs=42.1
Q ss_pred cCCccccccCccccccCC---CCceeecCCCC--------------------CCcchhhh-HHH----Hh--hCCCcCCC
Q 003929 34 LSGQICQICGDEIEITDN---GEPFVACNECA--------------------FPVCRPCY-EYE----RR--EGNQACPQ 83 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~~---Ge~FvAC~eC~--------------------FpVCRpCY-eyE----rk--eG~q~CPq 83 (786)
....+|.-|=.++---.| +=+|+-|..|| ||.|..|- ||+ || ----+||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 455689999888644333 56899999995 99999996 455 33 11249999
Q ss_pred Cccccccc
Q 003929 84 CKTRYKRI 91 (786)
Q Consensus 84 Ckt~Ykr~ 91 (786)
|+=++.-.
T Consensus 184 CGP~l~l~ 191 (772)
T 4g9i_A 184 CGPSYRLY 191 (772)
T ss_dssp TSCCEEEE
T ss_pred CCceEEEE
Confidence 99887543
No 107
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=34.61 E-value=7.4 Score=36.78 Aligned_cols=12 Identities=33% Similarity=0.686 Sum_probs=9.6
Q ss_pred CCcCCCCccccc
Q 003929 78 NQACPQCKTRYK 89 (786)
Q Consensus 78 ~q~CPqCkt~Yk 89 (786)
...||.|+.+--
T Consensus 107 ~~~CP~Cgs~~~ 118 (139)
T 3a43_A 107 FLACPKCGSHDF 118 (139)
T ss_dssp GCSCSSSSCCCE
T ss_pred CCcCccccCCcc
Confidence 578999998754
No 108
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=34.50 E-value=4.6 Score=34.26 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=26.0
Q ss_pred hHHHHhhCCCcCCCCccccccccCCCCCCCCCCC
Q 003929 70 YEYERREGNQACPQCKTRYKRIKGSPRVDGDEEE 103 (786)
Q Consensus 70 YeyErkeG~q~CPqCkt~Ykr~kGsprV~Gd~ee 103 (786)
.+|.+.+|.-.|+.|+..|--..|-|..--||..
T Consensus 18 L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear 51 (68)
T 2jr6_A 18 LEYHQDKQELWSRQAKLAYPIKDGIPYMLENEAR 51 (68)
T ss_dssp CEEETTTTEEEETTTTEEEEEETTEECCCTTTCE
T ss_pred CeEeCCCCEEEcCCCCcEecCCCCeeeeChhhcc
Confidence 3444556778999999999999888877766543
No 109
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.99 E-value=21 Score=29.96 Aligned_cols=52 Identities=17% Similarity=0.413 Sum_probs=30.0
Q ss_pred ccccccCCccccccCccccc----cCCCCce----eecCCCCCCcchhhhHHHHhhCCCcCCC
Q 003929 29 TSVKELSGQICQICGDEIEI----TDNGEPF----VACNECAFPVCRPCYEYERREGNQACPQ 83 (786)
Q Consensus 29 ~~~~~~~~~~CqiCgd~Vg~----~~~Ge~F----vAC~eC~FpVCRpCYeyErkeG~q~CPq 83 (786)
+|.+.....+|..|+..|.. .+.|..+ ..|.+|.-++=-.+| .++|.-.|..
T Consensus 8 ~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~---~~~g~~yC~~ 67 (80)
T 2dj7_A 8 KPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYI---SKDGVPYCES 67 (80)
T ss_dssp CCCCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCSSCCE---EETTEEECTT
T ss_pred CCcCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcCCCeE---EECCEEECHH
Confidence 55556667799999998863 2344443 357778665533222 2455444443
No 110
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=33.40 E-value=24 Score=30.16 Aligned_cols=49 Identities=24% Similarity=0.576 Sum_probs=34.6
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHH----HhhCC---CcCCC--Ccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE----RREGN---QACPQ--CKTRY 88 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyE----rkeG~---q~CPq--Ckt~Y 88 (786)
...|.||-+.+. +..++.-..|+=--|+.|..-- .++|. -.||+ |+..+
T Consensus 5 ~~~C~IC~~~~~----~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 5 SSGCKLCLGEYP----VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp BCCCSSSCCCCB----GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CcCCcccCcccc----cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 347999998753 3345554468889999997543 24664 48999 99874
No 111
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=33.00 E-value=14 Score=43.14 Aligned_cols=54 Identities=35% Similarity=0.894 Sum_probs=40.5
Q ss_pred CCccccccCccccccCC---CCceeecCCCC--------------------CCcchhhh-HHH----Hhh--CCCcCCCC
Q 003929 35 SGQICQICGDEIEITDN---GEPFVACNECA--------------------FPVCRPCY-EYE----RRE--GNQACPQC 84 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~---Ge~FvAC~eC~--------------------FpVCRpCY-eyE----rke--G~q~CPqC 84 (786)
...+|.-|=.++---.| +=+|+-|..|| ||.|..|. ||+ ||= ---+||.|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~C 95 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPEC 95 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCccc
Confidence 44599999988753333 55899999994 99999996 565 441 22599999
Q ss_pred cccc
Q 003929 85 KTRY 88 (786)
Q Consensus 85 kt~Y 88 (786)
+=++
T Consensus 96 GP~l 99 (657)
T 3ttc_A 96 GPYL 99 (657)
T ss_dssp SCCE
T ss_pred Cccc
Confidence 9888
No 112
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.58 E-value=32 Score=29.65 Aligned_cols=46 Identities=22% Similarity=0.376 Sum_probs=32.9
Q ss_pred CccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhC-----CCcCCC--Cccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREG-----NQACPQ--CKTR 87 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG-----~q~CPq--Ckt~ 87 (786)
.-+|.||.+- +. ++.+.- .|+.-.||.|-+--.+++ ...||. |...
T Consensus 7 ~~~CPI~~~~-~~----dPV~~~-~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEE-MK----KPVKNK-VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSB-CS----SEEEES-SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCch-hc----CCEEcC-CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3489999864 33 355542 689999999987665543 468999 8876
No 113
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=32.28 E-value=26 Score=33.78 Aligned_cols=24 Identities=38% Similarity=0.706 Sum_probs=16.7
Q ss_pred CCcchhhhHHHHhhCCC-cCCCCcccc
Q 003929 63 FPVCRPCYEYERREGNQ-ACPQCKTRY 88 (786)
Q Consensus 63 FpVCRpCYeyErkeG~q-~CPqCkt~Y 88 (786)
-+.|+.||. ++-+.+ .|..|+++.
T Consensus 55 ~~yC~~cy~--~~~~~~~~C~~C~~~I 79 (188)
T 1rut_X 55 MILCRNDYI--RLFGNSGACSACGQSI 79 (188)
T ss_dssp EEECHHHHH--HHHSCCEECTTTCCEE
T ss_pred ccccccccc--cccccCCccccCCCcc
Confidence 356899984 234444 799999876
No 114
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=32.06 E-value=23 Score=30.31 Aligned_cols=23 Identities=22% Similarity=0.603 Sum_probs=16.1
Q ss_pred CCcchhhhHHHHhhCCCcCCCCcccc
Q 003929 63 FPVCRPCYEYERREGNQACPQCKTRY 88 (786)
Q Consensus 63 FpVCRpCYeyErkeG~q~CPqCkt~Y 88 (786)
-+.|++||+ ++- ...|.+|+.+-
T Consensus 54 ~~yC~~cy~--~~~-~~~C~~C~~~I 76 (101)
T 2cup_A 54 KILCNKCTT--RED-SPKCKGCFKAI 76 (101)
T ss_dssp EEECHHHHT--TCC-CCBCSSSCCBC
T ss_pred EEEChhHhh--hhc-CCccccCCCcc
Confidence 467999983 223 36899998876
No 115
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=31.53 E-value=10 Score=44.03 Aligned_cols=45 Identities=9% Similarity=-0.024 Sum_probs=18.2
Q ss_pred cccccC-cccccc--CCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccc
Q 003929 38 ICQICG-DEIEIT--DNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (786)
Q Consensus 38 ~CqiCg-d~Vg~~--~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~ 87 (786)
.|..|| ..+-.. ..|..|..| |+||-|+.-.-. +-....||+ +.+
T Consensus 574 ~CP~Cg~g~l~~r~~k~G~~f~gC--s~yp~C~f~~~~--~p~~~~Cp~-~~~ 621 (633)
T 2gai_A 574 FYLKCECGKTRSVKNDEIAVIDDG--KIFLGRKDSESG--SPDGRSVEG-KGN 621 (633)
T ss_dssp EEEECSSSCCEECCTTSBCEEETT--EEEC-----------------------
T ss_pred cCcccCCCcceeecccCCCeEEeC--CCCcCCCCeecC--CccCCcCCC-CCe
Confidence 499998 665543 367789999 566666544321 223478998 644
No 116
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=31.36 E-value=17 Score=34.86 Aligned_cols=35 Identities=31% Similarity=0.667 Sum_probs=25.1
Q ss_pred ccccccC-cccc----ccCCCC-ceeecCCCCCCcchhhhH
Q 003929 37 QICQICG-DEIE----ITDNGE-PFVACNECAFPVCRPCYE 71 (786)
Q Consensus 37 ~~CqiCg-d~Vg----~~~~Ge-~FvAC~eC~FpVCRpCYe 71 (786)
.+|..|| .+.- +..+|+ .++--+|=-.|+||-||.
T Consensus 138 ~ic~~cg~~~a~~~~r~~~~~~~~~ig~~~~Y~~~cr~~~~ 178 (184)
T 2orw_A 138 AVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDCYN 178 (184)
T ss_dssp BCCTTTCCSCBCEEEECSSCSCSCCCCSTTTEEEECHHHHH
T ss_pred eecCCCCCeeceeEEEEcCCCCEEEECCCCcEEEccHHHHh
Confidence 4899999 5522 334555 466777888999999994
No 117
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=31.29 E-value=22 Score=29.27 Aligned_cols=42 Identities=33% Similarity=0.736 Sum_probs=30.0
Q ss_pred ccccccCccccccCCCCceeecCCCCCC-cchhhhHHHHhhCCCcCCCCcccccc
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~Fp-VCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
..|.||-+..- --++.+ |+=- .|+.|..-- ..||-|++++..
T Consensus 25 ~~C~iC~~~~~----~~~~~p---CgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 25 KLCKICMDRNI----AIVFVP---CGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp TBCTTTSSSBC----CEEEET---TCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCC----CEEEcC---CCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 48999987632 123554 5777 899997432 899999998854
No 118
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=30.99 E-value=13 Score=37.11 Aligned_cols=35 Identities=26% Similarity=0.524 Sum_probs=24.2
Q ss_pred ccccccCcccc----ccCCCCc-eeecCCCCCCcchhhhH
Q 003929 37 QICQICGDEIE----ITDNGEP-FVACNECAFPVCRPCYE 71 (786)
Q Consensus 37 ~~CqiCgd~Vg----~~~~Ge~-FvAC~eC~FpVCRpCYe 71 (786)
.+|..||.+-- ++++|+. .|-=+|=-.|+||-||.
T Consensus 152 aiC~~Cg~~A~~~~R~~~~~~~i~IGg~e~Y~~~CR~c~~ 191 (195)
T 1w4r_A 152 AVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYF 191 (195)
T ss_dssp EECTTTCSEECEEEESSCCCSSCCCCCTTTEEEECHHHHT
T ss_pred eEecccCCeeeeEEEEcCCCCEEEECCCCcEEEccHHHhh
Confidence 49999998732 2235553 44445778899999994
No 119
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=30.45 E-value=20 Score=38.57 Aligned_cols=43 Identities=28% Similarity=0.719 Sum_probs=31.0
Q ss_pred CccccccCccccccCCCCceeecCCCCCC-cchhhhHHHHhhCCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~FvAC~eC~Fp-VCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
...|.||-+..- .-++++ |+-- .|+.|..-- ..||-|++++.+
T Consensus 295 ~~~C~IC~~~~~----~~v~lp---CgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEV----SVVFIP---CGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBC----CEEEET---TCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCC----ceEEcC---CCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 358999998742 123444 5777 899998532 789999999864
No 120
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=30.44 E-value=25 Score=37.05 Aligned_cols=49 Identities=20% Similarity=0.408 Sum_probs=35.7
Q ss_pred CCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHhh-CCCcCCC--Cccccc
Q 003929 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERRE-GNQACPQ--CKTRYK 89 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErke-G~q~CPq--Ckt~Yk 89 (786)
..-+|.||.+-+- ++.+ ...||---||.|.+--.++ |...||. |+.++.
T Consensus 180 ~el~CPIcl~~f~-----DPVt-s~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYE-----APLI-SRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCS-----SEEE-ESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCccc-----CCee-eCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3448999998751 2332 3478988999999765554 5678999 999874
No 121
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=30.20 E-value=20 Score=28.99 Aligned_cols=53 Identities=21% Similarity=0.546 Sum_probs=34.4
Q ss_pred CCccccccCccccccCCCCceeecCCCCCCcchhhhHHHHh----hCCCcCCCCcccccc
Q 003929 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERR----EGNQACPQCKTRYKR 90 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErk----eG~q~CPqCkt~Ykr 90 (786)
.+..|.+|+..- .+++..|+|..|.-=.=-.|...... ...-.||.|..+..|
T Consensus 5 e~~~C~~C~~~~---~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~ 61 (64)
T 1we9_A 5 SSGQCGACGESY---AADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp SCCCCSSSCCCC---CSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCCcc---CCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCC
Confidence 355899998753 34678999998854433345444322 266889999875544
No 122
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=29.87 E-value=3.9 Score=34.77 Aligned_cols=33 Identities=12% Similarity=0.100 Sum_probs=25.4
Q ss_pred HHHHhhCCCcCCCCccccccccCCCCCCCCCCC
Q 003929 71 EYERREGNQACPQCKTRYKRIKGSPRVDGDEEE 103 (786)
Q Consensus 71 eyErkeG~q~CPqCkt~Ykr~kGsprV~Gd~ee 103 (786)
+|.+.+|.-.|+.|+..|--..|-|..--||..
T Consensus 19 ~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~ear 51 (69)
T 2pk7_A 19 KLSADKTELISKGAGLAYPIRDGIPVMLESEAR 51 (69)
T ss_dssp EECTTSSEEEETTTTEEEEEETTEECCCGGGCE
T ss_pred eEeCCCCEEEcCCCCcEecCcCCeeeeChhhcc
Confidence 344456778999999999999888877766543
No 123
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.76 E-value=33 Score=28.52 Aligned_cols=37 Identities=24% Similarity=0.611 Sum_probs=22.8
Q ss_pred cccCCccccccCcccc---ccCCCCce----eecCCCCCCcchh
Q 003929 32 KELSGQICQICGDEIE---ITDNGEPF----VACNECAFPVCRP 68 (786)
Q Consensus 32 ~~~~~~~CqiCgd~Vg---~~~~Ge~F----vAC~eC~FpVCRp 68 (786)
......+|..|+..|. +.+.|..+ .-|..|.-++=..
T Consensus 11 ~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~ 54 (79)
T 2cor_A 11 RGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTAD 54 (79)
T ss_dssp CCCCCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTT
T ss_pred hccCCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCC
Confidence 3455679999999876 22345443 2477776555444
No 124
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=29.52 E-value=30 Score=28.11 Aligned_cols=46 Identities=26% Similarity=0.738 Sum_probs=34.5
Q ss_pred CCccccccCccccccCCCCceeecCCCCCCcchhhhHH---HHhhCCCcCCCCccc
Q 003929 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKTR 87 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYey---ErkeG~q~CPqCkt~ 87 (786)
+...|.+|++ |...+.|..|.-..=..|+.- +.-+|.=.||.|..+
T Consensus 8 ~~~~C~vC~~-------~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKD-------GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCC-------CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCC-------CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 5668999996 345788999977777778762 244788899999754
No 125
>1m4f_A Hepcidin; strand-loop-strand, beta-sheet, hairpin loop, antimicrobial protein; NMR {Synthetic} SCOP: j.3.1.8 PDB: 2kef_A 3h0t_C
Probab=29.35 E-value=4.7 Score=28.63 Aligned_cols=23 Identities=35% Similarity=0.688 Sum_probs=14.4
Q ss_pred CCCcchhhhHHHHhhCCCcCCCCcc
Q 003929 62 AFPVCRPCYEYERREGNQACPQCKT 86 (786)
Q Consensus 62 ~FpVCRpCYeyErkeG~q~CPqCkt 86 (786)
.|||||+|+-=-++ ..+...|+|
T Consensus 3 ~~~iC~~CC~cc~~--~~CG~cC~~ 25 (26)
T 1m4f_A 3 HFPICIFCCGCCHR--SKCGMCCKT 25 (26)
T ss_dssp SSCCCEEEECSSSS--SSEEEECCC
T ss_pred cCCccceecccCCC--CCcCCeeCC
Confidence 59999999933333 344455554
No 126
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=28.79 E-value=36 Score=28.34 Aligned_cols=46 Identities=28% Similarity=0.660 Sum_probs=35.4
Q ss_pred cCCccccccCccccccCCCCceeecCCCCCCcchhhhHHH---HhhCCCcCCCCcc
Q 003929 34 LSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYE---RREGNQACPQCKT 86 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyE---rkeG~q~CPqCkt 86 (786)
..+..|.||++ |...+-|..|.-..=-.|+.-- .-+|.=.||.|..
T Consensus 10 ~~~~~C~vC~~-------~~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 10 APGARCGVCGD-------GTDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CTTCCCTTTSC-------CTTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCCcCCCCC-------CCeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 34568999985 3347889999988888998533 3478899999975
No 127
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=28.71 E-value=28 Score=27.99 Aligned_cols=47 Identities=17% Similarity=0.486 Sum_probs=31.9
Q ss_pred CccccccCccccccCCCCcee--ecCCCCCC-cchhhhHHHHhhCCCcCCCCcccccc
Q 003929 36 GQICQICGDEIEITDNGEPFV--ACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~~Ge~Fv--AC~eC~Fp-VCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
...|.||-+.-- --.++ +| +-- .|..|..--.+ .+..||-|+.+.+.
T Consensus 7 ~~~C~IC~~~~~----~~~~~~~pC---gH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPR----DGNIIHGRT---GHLVTCFHCARRLKK-AGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBS----CEEEEETTE---EEEEECHHHHHHHHH-TTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCC----CeEEEecCC---CCHhHHHHHHHHHHH-hCCcCCCcCchhhc
Confidence 458999988521 11344 55 554 79999975444 45899999998753
No 128
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=28.50 E-value=29 Score=34.30 Aligned_cols=54 Identities=24% Similarity=0.513 Sum_probs=36.4
Q ss_pred CCccccccCccccccCCCCceeecCCCCCCcchhhhHH-----HHh-----hCCCcCCCCcccc
Q 003929 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEY-----ERR-----EGNQACPQCKTRY 88 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYey-----Erk-----eG~q~CPqCkt~Y 88 (786)
+|+.|.||+..-.-++.+...+.|..|..=+=..|-.. |.- ...=.||.|....
T Consensus 1 ~G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 1 SGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp -CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 47899999876544444567999999987665555433 221 1357999998653
No 129
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.48 E-value=50 Score=26.41 Aligned_cols=9 Identities=33% Similarity=0.877 Sum_probs=6.2
Q ss_pred CCcchhhhH
Q 003929 63 FPVCRPCYE 71 (786)
Q Consensus 63 FpVCRpCYe 71 (786)
-+.|+.||+
T Consensus 54 ~~yC~~cy~ 62 (72)
T 1x61_A 54 RAYCEGCYV 62 (72)
T ss_dssp CEEEHHHHH
T ss_pred eEECHHHHH
Confidence 467788874
No 130
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=28.32 E-value=47 Score=27.00 Aligned_cols=7 Identities=29% Similarity=0.463 Sum_probs=4.4
Q ss_pred cccccCc
Q 003929 38 ICQICGD 44 (786)
Q Consensus 38 ~CqiCgd 44 (786)
.|..||.
T Consensus 13 ~Cp~C~~ 19 (58)
T 1dl6_A 13 TCPNHPD 19 (58)
T ss_dssp SBTTBSS
T ss_pred cCcCCCC
Confidence 5666665
No 131
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.19 E-value=56 Score=27.66 Aligned_cols=36 Identities=17% Similarity=0.379 Sum_probs=22.3
Q ss_pred ccccccCCccccccCccccc----cCCCCce----eecCCCCCC
Q 003929 29 TSVKELSGQICQICGDEIEI----TDNGEPF----VACNECAFP 64 (786)
Q Consensus 29 ~~~~~~~~~~CqiCgd~Vg~----~~~Ge~F----vAC~eC~Fp 64 (786)
++.+......|..|+..|.- .+.|..| ..|.+|.-+
T Consensus 8 ~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~ 51 (91)
T 2d8y_A 8 MKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNK 51 (91)
T ss_dssp SCSCSSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCB
T ss_pred CccCCCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCC
Confidence 44555567899999998853 3456554 235566433
No 132
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=27.05 E-value=15 Score=33.85 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=0.9
Q ss_pred CCccccccCccccccC-----------CCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCccccc
Q 003929 35 SGQICQICGDEIEITD-----------NGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~-----------~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Yk 89 (786)
....|.||-+++.... .++.-+.-..|+---|+.|-.-=. ..+..||-|+.+++
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl-~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNREWE 111 (117)
T ss_dssp CC----------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHH-HcCCcCCCCCCeee
Confidence 4468999999876421 223333334678888999974333 33789999999864
No 133
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=26.95 E-value=22 Score=31.32 Aligned_cols=28 Identities=39% Similarity=0.936 Sum_probs=21.7
Q ss_pred ccccccCccccccC----CCCceeecCCCCCCc
Q 003929 37 QICQICGDEIEITD----NGEPFVACNECAFPV 65 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~----~Ge~FvAC~eC~FpV 65 (786)
..|+ |||..-+++ +|+..|.|..|..-|
T Consensus 31 y~Cr-CGd~F~it~edL~~ge~iv~C~sCSL~I 62 (83)
T 1wge_A 31 YPCP-CGDNFAITKEDLENGEDVATCPSCSLII 62 (83)
T ss_dssp ECCS-SSSCEEEEHHHHHTTCCEEECTTTCCEE
T ss_pred EeCC-CCCEEEECHHHHhCCCEEEECCCCceEE
Confidence 4687 999876663 788888888887766
No 134
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=26.94 E-value=32 Score=30.72 Aligned_cols=42 Identities=31% Similarity=0.738 Sum_probs=26.4
Q ss_pred cccccCccccccCCCCceeecCCCCCCcchhhhHHHHhhCCCcCCCCcccc
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRY 88 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~Y 88 (786)
.|..|+..+. |..|+. .=+-|.|+.||.- +- ...|..|+++.
T Consensus 32 ~C~~C~~~L~----~~~f~~--~~g~~yC~~cy~~--~~-~~~C~~C~~~I 73 (126)
T 2xqn_T 32 CCFDCDSILA----GEIYVM--VNDKPVCKPCYVK--NH-AVVCQGCHNAI 73 (126)
T ss_dssp BCTTTCCBCT----TSEEEE--ETTEEEEHHHHHH--HS-CCBCTTTCSBC
T ss_pred CcCCCCCCCC----cCEEEe--ECCEEechHHhCc--Cc-CccCcccCCcC
Confidence 5666666543 333332 2255789999942 23 36899999976
No 135
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=26.65 E-value=31 Score=26.62 Aligned_cols=45 Identities=27% Similarity=0.822 Sum_probs=31.8
Q ss_pred cccccCccccccCCCCceeecCCCCCCcchhhhH---HHHhhCCCcCCCCcc
Q 003929 38 ICQICGDEIEITDNGEPFVACNECAFPVCRPCYE---YERREGNQACPQCKT 86 (786)
Q Consensus 38 ~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYe---yErkeG~q~CPqCkt 86 (786)
.|.+|++. .+++..+.|..|.-..=-.|+. -+.-+|.-.||.|..
T Consensus 2 ~C~vC~~~----~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKK----GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCS----SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCC----CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 59999875 3466789999987555556763 233467888999964
No 136
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=25.62 E-value=17 Score=32.47 Aligned_cols=28 Identities=39% Similarity=0.939 Sum_probs=20.6
Q ss_pred ccccccCccccccC----CCCceeecCCCCCCc
Q 003929 37 QICQICGDEIEITD----NGEPFVACNECAFPV 65 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~----~Ge~FvAC~eC~FpV 65 (786)
..|+ |||..-+++ +|+..|.|..|..-|
T Consensus 24 ypCr-CGd~F~IteedLe~ge~iv~C~sCSL~I 55 (89)
T 2jr7_A 24 YPCP-CGDNFSITKEDLENGEDVATCPSCSLII 55 (89)
T ss_dssp EECT-TSSEEEEEHHHHHHTCCEEECTTTCCEE
T ss_pred EcCC-CCCEEEECHHHHhCCCEEEECCCCccEE
Confidence 3687 888866663 688888887777766
No 137
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=25.30 E-value=19 Score=31.66 Aligned_cols=28 Identities=32% Similarity=0.808 Sum_probs=20.8
Q ss_pred ccccccCccccccC----CCCceeecCCCCCCc
Q 003929 37 QICQICGDEIEITD----NGEPFVACNECAFPV 65 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~----~Ge~FvAC~eC~FpV 65 (786)
..|+ |||..-+++ +|+..|.|..|..-|
T Consensus 24 ypCr-CGd~F~it~edL~~ge~iv~C~sCSL~I 55 (83)
T 1yop_A 24 YPCP-CGDRFQIYLDDMFEGEKVAVCPSCSLMI 55 (83)
T ss_dssp EEET-TTEEEEEEHHHHHTTCCEEECSSSCCEE
T ss_pred EeCC-CCCeEEECHHHHhCCCEEEECCCCccEE
Confidence 4687 998866663 788888888887755
No 138
>2ksl_A U1-agatoxin-TA1A; insecticidal toxin, spider toxin, neurotoxin, crustacean hyperglycemic hormone, MOLT-inhibiting hormone; NMR {Tegenaria agrestis}
Probab=24.83 E-value=2.8 Score=32.97 Aligned_cols=25 Identities=28% Similarity=0.884 Sum_probs=18.2
Q ss_pred CccccccCccccccC----CCCceeecCC
Q 003929 36 GQICQICGDEIEITD----NGEPFVACNE 60 (786)
Q Consensus 36 ~~~CqiCgd~Vg~~~----~Ge~FvAC~e 60 (786)
+.+|.-|||.|..-+ +.++..||||
T Consensus 20 snvcngcgdqvaaceaecfrndvytache 48 (51)
T 2ksl_A 20 SNVCNGCGDQVAACEAECFRNDVYTACHE 48 (51)
T ss_dssp HHHHHHHCSCHHHHHHTTSCSHHHHHHHH
T ss_pred ccccccchhHHHHHHHHHHhhhHHHHHHh
Confidence 458999999986543 5667777765
No 139
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=24.02 E-value=49 Score=32.99 Aligned_cols=28 Identities=11% Similarity=0.178 Sum_probs=23.0
Q ss_pred CCEEEEecCCCCCCcHHHHHHhhccccc
Q 003929 568 APYLLNVDCDHYINNSKALREAMCFMMD 595 (786)
Q Consensus 568 gpfILnLDaD~yinnp~~Lr~amcfflD 595 (786)
.+++|++|||+=.-.++.+++.+-.+.+
T Consensus 100 ~d~Vlv~~~d~Pli~~~~i~~li~~~~~ 127 (231)
T 3q80_A 100 PEFVLVHDAARALTPPALVARVVEALRD 127 (231)
T ss_dssp CSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence 5799999999966679999988877654
No 140
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=23.69 E-value=63 Score=30.50 Aligned_cols=24 Identities=21% Similarity=0.449 Sum_probs=15.8
Q ss_pred CCCcchhhhHHHHhhCCCcCCCCcccc
Q 003929 62 AFPVCRPCYEYERREGNQACPQCKTRY 88 (786)
Q Consensus 62 ~FpVCRpCYeyErkeG~q~CPqCkt~Y 88 (786)
+-+.|+.||.- +-+ ..|..|+++.
T Consensus 52 g~~yC~~~y~~--~f~-~~C~~C~~~I 75 (169)
T 2rgt_A 52 ESVYCKDDFFK--RFG-TKCAACQLGI 75 (169)
T ss_dssp SCEECHHHHHH--HHS-CBCTTTCCBC
T ss_pred Ceeeecccccc--ccc-cccccccccc
Confidence 34678898843 233 6788888755
No 141
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.61 E-value=24 Score=32.50 Aligned_cols=26 Identities=27% Similarity=0.740 Sum_probs=17.9
Q ss_pred eecCCCCCCcchhhhHHHHhhCCCcCCCCccc
Q 003929 56 VACNECAFPVCRPCYEYERREGNQACPQCKTR 87 (786)
Q Consensus 56 vAC~eC~FpVCRpCYeyErkeG~q~CPqCkt~ 87 (786)
..|..|||-.+ ++-.....||.||..
T Consensus 68 ~~C~~CG~~F~------~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 68 AQCRKCGFVFK------AEINIPSRCPKCKSE 93 (105)
T ss_dssp CBBTTTCCBCC------CCSSCCSSCSSSCCC
T ss_pred cChhhCcCeec------ccCCCCCCCcCCCCC
Confidence 35888888861 233445789999864
No 142
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=23.61 E-value=30 Score=28.58 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=7.0
Q ss_pred CccccccCcccc
Q 003929 36 GQICQICGDEIE 47 (786)
Q Consensus 36 ~~~CqiCgd~Vg 47 (786)
...|..|+..|.
T Consensus 7 ~~~C~~C~~~I~ 18 (81)
T 1a7i_A 7 GNKCGACGRTVY 18 (81)
T ss_dssp -CBCSSSCCBCS
T ss_pred CCcCcCcCcccc
Confidence 346777766664
No 143
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.31 E-value=54 Score=26.93 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=9.6
Q ss_pred CCccccccCcccc
Q 003929 35 SGQICQICGDEIE 47 (786)
Q Consensus 35 ~~~~CqiCgd~Vg 47 (786)
.+.+|..|+..|.
T Consensus 14 ~~~~C~~C~~~I~ 26 (82)
T 1x63_A 14 DSPKCKGCFKAIV 26 (82)
T ss_dssp CSCBCSSSCCBCC
T ss_pred cCCcCccCCcccc
Confidence 3568888888776
No 144
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.11 E-value=52 Score=26.42 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=7.0
Q ss_pred CccccccCcccc
Q 003929 36 GQICQICGDEIE 47 (786)
Q Consensus 36 ~~~CqiCgd~Vg 47 (786)
...|..|+..|.
T Consensus 5 ~~~C~~C~~~I~ 16 (72)
T 1x4l_A 5 SSGCAGCTNPIS 16 (72)
T ss_dssp SCSBTTTTBCCC
T ss_pred CCCCcCCCcccc
Confidence 346666666654
No 145
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=22.63 E-value=48 Score=27.85 Aligned_cols=42 Identities=29% Similarity=0.835 Sum_probs=29.7
Q ss_pred ccccccCccccccCCCCceeecCCCCCC-cchhhhHHHHhhCCCcCCCCcccccc
Q 003929 37 QICQICGDEIEITDNGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (786)
Q Consensus 37 ~~CqiCgd~Vg~~~~Ge~FvAC~eC~Fp-VCRpCYeyErkeG~q~CPqCkt~Ykr 90 (786)
..|.||-+..- --+|++| +-- .|+.|..- -+.||-|+++...
T Consensus 19 ~~C~IC~~~~~----~~v~~pC---gH~~~C~~C~~~-----~~~CP~Cr~~i~~ 61 (79)
T 2yho_A 19 MLCMVCCEEEI----NSTFCPC---GHTVCCESCAAQ-----LQSCPVCRSRVEH 61 (79)
T ss_dssp TBCTTTSSSBC----CEEEETT---CBCCBCHHHHTT-----CSBCTTTCCBCCE
T ss_pred CEeEEeCcccC----cEEEECC---CCHHHHHHHHHh-----cCcCCCCCchhhC
Confidence 48999987632 1246665 555 79999852 2599999998854
No 146
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=22.33 E-value=20 Score=28.82 Aligned_cols=49 Identities=20% Similarity=0.694 Sum_probs=35.2
Q ss_pred CCccccccCccccccCCCCceeecCCCCCCcchhhhH--HH-HhhCCCcCCCCcccccc
Q 003929 35 SGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYE--YE-RREGNQACPQCKTRYKR 90 (786)
Q Consensus 35 ~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYe--yE-rkeG~q~CPqCkt~Ykr 90 (786)
+...|.+|++. | ..+.|..|.-..=..|.. .. .-+|.-.||.|......
T Consensus 4 ~~~~C~vC~~~------g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 4 HEDFCSVCRKS------G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCSSCTTTCCC------S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCcCCCCC------C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 46689999973 3 578899997655567776 22 34688899999766543
No 147
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.25 E-value=29 Score=27.95 Aligned_cols=15 Identities=27% Similarity=1.061 Sum_probs=13.0
Q ss_pred CCCcCCCCccccccc
Q 003929 77 GNQACPQCKTRYKRI 91 (786)
Q Consensus 77 G~q~CPqCkt~Ykr~ 91 (786)
|..+||+|+..|+..
T Consensus 11 ~~~~CPrCn~~f~~~ 25 (49)
T 2e72_A 11 GRKICPRCNAQFRVT 25 (49)
T ss_dssp SCCCCTTTCCCCSSH
T ss_pred CceeCCcccccccch
Confidence 678999999999765
No 148
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=22.25 E-value=44 Score=29.73 Aligned_cols=49 Identities=22% Similarity=0.526 Sum_probs=35.3
Q ss_pred cCCccccccCccccccCCCCceeecCCCCCCcchhhhHHHH---hhCCCcCCCCcc
Q 003929 34 LSGQICQICGDEIEITDNGEPFVACNECAFPVCRPCYEYER---REGNQACPQCKT 86 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~~~~Ge~FvAC~eC~FpVCRpCYeyEr---keG~q~CPqCkt 86 (786)
.+..+|.+|++.- +.+.++.|..|.-..=..|..... +++.-.||.|++
T Consensus 5 ~~~~~C~~C~~~g----~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~ 56 (111)
T 2ysm_A 5 SSGANCAVCDSPG----DLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKV 56 (111)
T ss_dssp CCCSCBTTTCCCC----CTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCC
T ss_pred CCCCCCcCCCCCC----CCcCCeECCCCCCCcChHHhCCccccccccCccCCcCCc
Confidence 3567999999861 224579999998776667776553 357788998873
No 149
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=21.93 E-value=72 Score=32.36 Aligned_cols=79 Identities=16% Similarity=0.142 Sum_probs=45.4
Q ss_pred CCCCEEEEecCC---CCCCcHHHHHHhhcccccCCCCcceEEEecCccccCCCCCCCccchhhhhhhhhccccccCCCce
Q 003929 566 SNAPYLLNVDCD---HYINNSKALREAMCFMMDPTSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPI 642 (786)
Q Consensus 566 TngpfILnLDaD---~yinnp~~Lr~amcfflDp~~g~~vafVQtPQ~F~nid~~D~~~n~~~vFf~ii~~g~Dg~~g~~ 642 (786)
+.+.+++.+||| + .-+|+.+.+.+ +.|.+|..---|.+=.+ . +..-.. .|-.... ++ ...
T Consensus 52 ~~~dhllfIDAD~~~I-~FdPe~V~rLl------~~g~DVV~GsYp~K~~~----~-~s~~a~-~y~~~i~--~~--~V~ 114 (203)
T 2c0n_A 52 KDYDTLAFLDEDVVPI-EIDFQKVEAKF------NEGYDVVCGYYYLKTLR----G-YSVYRK-DWEKEIF--DG--EVN 114 (203)
T ss_dssp TTCCEEEEECTTEEEE-ECCHHHHHHHH------HHTCSEEEEECBCTTSS----S-BSEESS-SBCSSCC--CE--ECS
T ss_pred CCCCEEEEEeCCCCcc-ccCHHHHHHHH------hCCCCEEEEEeeccCCC----c-cchHHH-HHHHhcc--Cc--eee
Confidence 568999999999 8 68899988877 12333333333322111 1 111111 1111111 11 456
Q ss_pred ecccch-hhhhhhhcCCCCC
Q 003929 643 YVGTGC-VFRRQALYGYDAP 661 (786)
Q Consensus 643 ~~GTgc-v~RR~AL~G~~Pp 661 (786)
++|||+ ++||++|..+..|
T Consensus 115 d~~tGF~lIkR~V~e~L~~p 134 (203)
T 2c0n_A 115 GCGLGFTFIKREFLEKIKRP 134 (203)
T ss_dssp EECSSEEEEEHHHHTTSCSS
T ss_pred eccccEEEEhHHHHHHHhhh
Confidence 999998 5699999888655
No 150
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=21.48 E-value=8.1 Score=39.41 Aligned_cols=36 Identities=33% Similarity=0.563 Sum_probs=23.7
Q ss_pred ccccccCcccccc---CCC-------Cc-eeecCCCCCCcchhhhHH
Q 003929 37 QICQICGDEIEIT---DNG-------EP-FVACNECAFPVCRPCYEY 72 (786)
Q Consensus 37 ~~CqiCgd~Vg~~---~~G-------e~-FvAC~eC~FpVCRpCYey 72 (786)
.+|..||.+--.+ .+| +. .|-=+|=-.|+||-||.-
T Consensus 163 aiC~~CG~~A~~~~R~~~g~~~~~~g~~i~IGg~e~Y~~~CR~cy~~ 209 (219)
T 3e2i_A 163 AVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHHIV 209 (219)
T ss_dssp EECTTTCSEECEEEEEETTEECBTTCCSCCSSCCEEEEEECGGGCCC
T ss_pred eEccCCCCcceEEEEEECCcccccCCCEEEECCCccEEEcCHHhhcC
Confidence 4999999883322 243 32 344456678999999953
No 151
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.45 E-value=35 Score=27.64 Aligned_cols=31 Identities=26% Similarity=0.655 Sum_probs=18.8
Q ss_pred cCCccccccCccccc-----cCCCCce----eecCCCCCC
Q 003929 34 LSGQICQICGDEIEI-----TDNGEPF----VACNECAFP 64 (786)
Q Consensus 34 ~~~~~CqiCgd~Vg~-----~~~Ge~F----vAC~eC~Fp 64 (786)
+.+..|..|+..|.- .+.|..+ ..|..|.-+
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~ 48 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQ 48 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCC
T ss_pred CCCCCchhcCCccCCCceEEEeCccEeccccCeECCCCCC
Confidence 456789999998852 2445443 236666443
No 152
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=20.59 E-value=48 Score=26.90 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=8.2
Q ss_pred CccccccCcccc
Q 003929 36 GQICQICGDEIE 47 (786)
Q Consensus 36 ~~~CqiCgd~Vg 47 (786)
+..|..|+..|.
T Consensus 15 ~~~C~~C~~~I~ 26 (77)
T 2egq_A 15 AKKCAGCKNPIT 26 (77)
T ss_dssp CCCCSSSCCCCC
T ss_pred CccCcccCCccc
Confidence 457777777765
No 153
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=20.57 E-value=62 Score=24.55 Aligned_cols=17 Identities=18% Similarity=0.422 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHhhhhc
Q 003929 292 ILLRLVILGLFFHYRIL 308 (786)
Q Consensus 292 ii~~lv~l~~yl~wRi~ 308 (786)
+++.+++..-||+||-.
T Consensus 17 ~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 17 VVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCceeEEEccc
Confidence 44445555678999853
No 154
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=20.43 E-value=16 Score=34.77 Aligned_cols=13 Identities=38% Similarity=0.963 Sum_probs=10.7
Q ss_pred CcCCCCccccccc
Q 003929 79 QACPQCKTRYKRI 91 (786)
Q Consensus 79 q~CPqCkt~Ykr~ 91 (786)
..||.|+.+.+|.
T Consensus 149 ~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 149 GVCPDCGSKVKLI 161 (165)
T ss_dssp GBCTTTCCBEEEC
T ss_pred CcCCCCCCcceeC
Confidence 5899999988765
No 155
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=20.35 E-value=30 Score=35.56 Aligned_cols=35 Identities=26% Similarity=0.524 Sum_probs=23.8
Q ss_pred ccccccCcccc----ccCCCCc-eeecCCCCCCcchhhhH
Q 003929 37 QICQICGDEIE----ITDNGEP-FVACNECAFPVCRPCYE 71 (786)
Q Consensus 37 ~~CqiCgd~Vg----~~~~Ge~-FvAC~eC~FpVCRpCYe 71 (786)
.+|..||.+-- +..+|+. .+-=+|=-.|+||-||.
T Consensus 151 aIC~~Cg~~A~~t~R~~~~~~~i~IGg~e~Y~~~CR~c~~ 190 (234)
T 2orv_A 151 AVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYF 190 (234)
T ss_dssp EECTTTCSEECEEEESSCCCSSCCCCCTTTEEEECHHHHH
T ss_pred eEecCcCCcceEEEEEcCCCCEEEECCCCcEEEccHHhhh
Confidence 48999998732 2234553 44445777899999994
No 156
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=20.30 E-value=65 Score=29.08 Aligned_cols=49 Identities=20% Similarity=0.560 Sum_probs=35.2
Q ss_pred ccccccCccc---cccCCCCceeecCCCCCCcchhhhHH------HHhhCCCcCCCCc
Q 003929 37 QICQICGDEI---EITDNGEPFVACNECAFPVCRPCYEY------ERREGNQACPQCK 85 (786)
Q Consensus 37 ~~CqiCgd~V---g~~~~Ge~FvAC~eC~FpVCRpCYey------ErkeG~q~CPqCk 85 (786)
.+|.+|.+.- ..+.+++.++.|..|.-..=..|.+. ..+++.=.||.|+
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 4799996653 23346788999999986655566654 3567888899886
Done!