BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003931
(785 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 190/616 (30%), Positives = 291/616 (47%), Gaps = 42/616 (6%)
Query: 1 MGDLSELQYLSVYDNNLNGAIPFQLS---SLRKVRYLDLGGNFLETPD---WSKFSSMPS 54
+G S L++L+V N L+ P ++S L + LDL N + + W
Sbjct: 119 LGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 176
Query: 55 LTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQF 114
L HL + N+++ + + C NL +LD+S N S IP + L++L+++ N+
Sbjct: 177 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKL 232
Query: 115 QGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL-GQL 173
G S +S + L L +++N+F GPIP + +LQ + L N FTG+IP L G
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGAC 290
Query: 174 KNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQXXXXX-XXXXXXXXXXXXXXXXXX 232
L LDL N +PP G C+ L LAL+ N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 233 FLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTK--LQYLFLYRNNFSGPIPSE 290
SGE+ +L L +L + +N+F G I P + K LQ L+L N F+G IP
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 410
Query: 291 IEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDV 350
+ + L +L LS N LSGTIP + G IP E+ + +L +
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 351 NTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPH 410
+ N L GE+P +S LN S+ N +G IP G+ +L + SNNSFSG +P
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPA 529
Query: 411 ELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRF-DGNQFT-----GNITKAFGVHP 464
EL +L L +N N F G++PA + S F G ++ G + G
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 465 RLDFIRLSGNQ----------------FVGEISPDWGECRNLSNLQLDRNRISGGIPAEL 508
L+F + Q + G SP + ++ L + N +SG IP E+
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 509 GNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLS 568
G++ L +L+L N+++G IP ++G L L L+LS+N L G IP+++S LT L +DLS
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 569 NNKLTGDVPQELGRFD 584
NN L+G +P E+G+F+
Sbjct: 710 NNNLSGPIP-EMGQFE 724
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 202/670 (30%), Positives = 309/670 (46%), Gaps = 67/670 (10%)
Query: 14 DNNLNGAIP-FQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLG-LYLNELTLEFPS 71
++++NG++ F+ S+ + LDL N L P + +S+ S + L L ++ TL+FP
Sbjct: 83 NSHINGSVSGFKCSA--SLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 72 FI---LTCRNLTYLDLSLNKLSG--LIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLS 126
+ L +L LDLS N +SG ++ L G+L++L ++ N+ G + +VS+
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV 197
Query: 127 NLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 186
NL L +++N FS IP +G S LQ +++ N +G ++ L+ L++ N
Sbjct: 198 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 187 NYTIPPELGLCTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEISANLIGNW 246
IPP L L +L YL+LA N+ +GEI L G
Sbjct: 257 VGPIPP-LPL-KSLQYLSLAENK------------------------FTGEIPDFLSGAC 290
Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE-IEKLTSLENLDLSGN 305
L L + N F G +PP G + L+ L L NNFSG +P + + K+ L+ LDLS N
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 306 QLSGTIPPTXXXXXXXXXXXXXXXXX-XGTIPPEIGS--MASLVAFDVNTNQLHGELPEN 362
+ SG +P + G I P + +L + N G++P
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 410
Query: 363 ISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELT 422
+S +L + N SG+IP G S L ++ N GE+P EL LE L
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 423 VNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISP 482
++ N+ TG +P+ L NC+NLN + N+ TG I K G L ++LS N F G I
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 483 DWGECRNLSNLQLDRNRISGGIPAEL----GNLT-------RLGVLSLDSN--------- 522
+ G+CR+L L L+ N +G IPA + G + R + D
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 523 --ELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQEL 580
E G L +L N+++ G + N + +LD+S N L+G +P+E+
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 581 GRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNL 640
G G IP +G+L L +LDLSSN L G IPQ + LT L ++L
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLN-ILDLSSNKLDGRIPQAMSALTMLTEIDL 708
Query: 641 SRNQLSGRIP 650
S N LSG IP
Sbjct: 709 SNNNLSGPIP 718
Score = 173 bits (438), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 171/540 (31%), Positives = 256/540 (47%), Gaps = 93/540 (17%)
Query: 126 SNLIDLRLATNKFSGPIPG--DIGSMSNLQLVELFNNS--FTGQIPSSLGQLKNLQHLDL 181
++L L L+ N SGP+ +GS S L+ + + +N+ F G++ L +L +L+ LDL
Sbjct: 97 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 155
Query: 182 RMNALNYTIPPELGL---CTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEI 238
N+++ L C L +LA++ N+ +SG++
Sbjct: 156 SANSISGANVVGWVLSDGCGELKHLAISGNK------------------------ISGDV 191
Query: 239 SANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLE 298
+ LE L + +N+F IP +G + LQ+L + N SG I T L+
Sbjct: 192 D---VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELK 247
Query: 299 NLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGE 358
L++S NQ G IPP +P + SL + N+ GE
Sbjct: 248 LLNISSNQFVGPIPP---------------------LP-----LKSLQYLSLAENKFTGE 281
Query: 359 LPENISRLVK-LNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHE-LCSGF 416
+P+ +S L + N+F G++P FG S SNN FSGELP + L
Sbjct: 282 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMR 340
Query: 417 ALEELTVNGNNFTGSLPACLRNCS-NLNRVRFDGNQFTGNITKAFGVHPR--LDFIRLSG 473
L+ L ++ N F+G LP L N S +L + N F+G I +P+ L + L
Sbjct: 341 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 400
Query: 474 NQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLG 533
N F G+I P C L +L L N +SG IP+ LG+L++L L L N L G+IP +L
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 460
Query: 534 KLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXX 593
+ L L L N LTGEIP +SN T L ++ LSNN+LTG++P+ +GR +
Sbjct: 461 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE--------- 511
Query: 594 XXXXGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASL 653
NL +L+ LS+NS SG IP ELG SL L+L+ N +G IPA++
Sbjct: 512 ------------NLAILK----LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 555
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 27/107 (25%)
Query: 543 LSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPS 602
LSN+H+ G + L LDLS N L+G V +
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPV----------------------TTLT 117
Query: 603 NLGNLFVLQYMLDLSSNSLS--GTIPQELGKLTSLEILNLSRNQLSG 647
+LG+ L++ L++SSN+L G + L KL SLE+L+LS N +SG
Sbjct: 118 SLGSCSGLKF-LNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISG 162
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 201 bits (511), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 190/616 (30%), Positives = 291/616 (47%), Gaps = 42/616 (6%)
Query: 1 MGDLSELQYLSVYDNNLNGAIPFQLS---SLRKVRYLDLGGNFLETPD---WSKFSSMPS 54
+G S L++L+V N L+ P ++S L + LDL N + + W
Sbjct: 122 LGSCSGLKFLNVSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE 179
Query: 55 LTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQF 114
L HL + N+++ + + C NL +LD+S N S IP + L++L+++ N+
Sbjct: 180 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKL 235
Query: 115 QGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL-GQL 173
G S +S + L L +++N+F GPIP + +LQ + L N FTG+IP L G
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGAC 293
Query: 174 KNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQXXXXX-XXXXXXXXXXXXXXXXXX 232
L LDL N +PP G C+ L LAL+ N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 233 FLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTK--LQYLFLYRNNFSGPIPSE 290
SGE+ +L L +L + +N+F G I P + K LQ L+L N F+G IP
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 291 IEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDV 350
+ + L +L LS N LSGTIP + G IP E+ + +L +
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 351 NTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPH 410
+ N L GE+P +S LN S+ N +G IP G+ +L + SNNSFSG +P
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE-NLAILKLSNNSFSGNIPA 532
Query: 411 ELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRF-DGNQFT-----GNITKAFGVHP 464
EL +L L +N N F G++PA + S F G ++ G + G
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 465 RLDFIRLSGNQ----------------FVGEISPDWGECRNLSNLQLDRNRISGGIPAEL 508
L+F + Q + G SP + ++ L + N +SG IP E+
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 509 GNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLS 568
G++ L +L+L N+++G IP ++G L L L+LS+N L G IP+++S LT L +DLS
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 569 NNKLTGDVPQELGRFD 584
NN L+G +P E+G+F+
Sbjct: 713 NNNLSGPIP-EMGQFE 727
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 202/670 (30%), Positives = 309/670 (46%), Gaps = 67/670 (10%)
Query: 14 DNNLNGAIP-FQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLG-LYLNELTLEFPS 71
++++NG++ F+ S+ + LDL N L P + +S+ S + L L ++ TL+FP
Sbjct: 86 NSHINGSVSGFKCSA--SLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 72 FI---LTCRNLTYLDLSLNKLSG--LIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLS 126
+ L +L LDLS N +SG ++ L G+L++L ++ N+ G + +VS+
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV 200
Query: 127 NLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 186
NL L +++N FS IP +G S LQ +++ N +G ++ L+ L++ N
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 187 NYTIPPELGLCTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEISANLIGNW 246
IPP L L +L YL+LA N+ +GEI L G
Sbjct: 260 VGPIPP-LPL-KSLQYLSLAENK------------------------FTGEIPDFLSGAC 293
Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE-IEKLTSLENLDLSGN 305
L L + N F G +PP G + L+ L L NNFSG +P + + K+ L+ LDLS N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 306 QLSGTIPPTXXXXXXXXXXXXXXXXX-XGTIPPEIGS--MASLVAFDVNTNQLHGELPEN 362
+ SG +P + G I P + +L + N G++P
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 363 ISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELT 422
+S +L + N SG+IP G S L ++ N GE+P EL LE L
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 423 VNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISP 482
++ N+ TG +P+ L NC+NLN + N+ TG I K G L ++LS N F G I
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 483 DWGECRNLSNLQLDRNRISGGIPAEL----GNLT-------RLGVLSLDSN--------- 522
+ G+CR+L L L+ N +G IPA + G + R + D
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 523 --ELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQEL 580
E G L +L N+++ G + N + +LD+S N L+G +P+E+
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 581 GRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNL 640
G G IP +G+L L +LDLSSN L G IPQ + LT L ++L
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLN-ILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 641 SRNQLSGRIP 650
S N LSG IP
Sbjct: 712 SNNNLSGPIP 721
Score = 173 bits (438), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 171/540 (31%), Positives = 256/540 (47%), Gaps = 93/540 (17%)
Query: 126 SNLIDLRLATNKFSGPIPG--DIGSMSNLQLVELFNNS--FTGQIPSSLGQLKNLQHLDL 181
++L L L+ N SGP+ +GS S L+ + + +N+ F G++ L +L +L+ LDL
Sbjct: 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDL 158
Query: 182 RMNALNYTIPPELGL---CTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEI 238
N+++ L C L +LA++ N+ +SG++
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNK------------------------ISGDV 194
Query: 239 SANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLE 298
+ LE L + +N+F IP +G + LQ+L + N SG I T L+
Sbjct: 195 D---VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELK 250
Query: 299 NLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGE 358
L++S NQ G IPP +P + SL + N+ GE
Sbjct: 251 LLNISSNQFVGPIPP---------------------LP-----LKSLQYLSLAENKFTGE 284
Query: 359 LPENISRLVK-LNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHE-LCSGF 416
+P+ +S L + N+F G++P FG S SNN FSGELP + L
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN-FSGELPMDTLLKMR 343
Query: 417 ALEELTVNGNNFTGSLPACLRNCS-NLNRVRFDGNQFTGNITKAFGVHPR--LDFIRLSG 473
L+ L ++ N F+G LP L N S +L + N F+G I +P+ L + L
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403
Query: 474 NQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLG 533
N F G+I P C L +L L N +SG IP+ LG+L++L L L N L G+IP +L
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463
Query: 534 KLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXX 593
+ L L L N LTGEIP +SN T L ++ LSNN+LTG++P+ +GR +
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE--------- 514
Query: 594 XXXXGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASL 653
NL +L+ LS+NS SG IP ELG SL L+L+ N +G IPA++
Sbjct: 515 ------------NLAILK----LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 27/107 (25%)
Query: 543 LSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPS 602
LSN+H+ G + L LDLS N L+G V +
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPV----------------------TTLT 120
Query: 603 NLGNLFVLQYMLDLSSNSLS--GTIPQELGKLTSLEILNLSRNQLSG 647
+LG+ L++ L++SSN+L G + L KL SLE+L+LS N +SG
Sbjct: 121 SLGSCSGLKF-LNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISG 165
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 72/223 (32%), Positives = 109/223 (48%), Gaps = 9/223 (4%)
Query: 432 LPACLRNCSNLNRVRFDG-NQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNL 490
+P+ L N LN + G N G I A +L ++ ++ G I + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 491 SNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLF-NLNLSNNHLT 549
L N +SG +P + +L L ++ D N ++G IP G KLF ++ +S N LT
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 550 GEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFV 609
G+IP + +NL LA++DLS N L GD G DK + +LG + +
Sbjct: 188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGS-DK---NTQKIHLAKNSLAFDLGKVGL 242
Query: 610 LQYM--LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIP 650
+ + LDL +N + GT+PQ L +L L LN+S N L G IP
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 113/238 (47%), Gaps = 36/238 (15%)
Query: 353 NQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHEL 412
N L G +P I++L +L+ + N SG+IP DF +L+ + FS N+ SG LP +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 413 CSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRL-DFIRL 471
SLP NL + FDGN+ +G I ++G +L + +
Sbjct: 146 -----------------SSLP-------NLVGITFDGNRISGAIPDSYGSFSKLFTSMTI 181
Query: 472 SGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTD 531
S N+ G+I P + NL+ + L RN + G G+ + L N L D
Sbjct: 182 SRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA----FD 236
Query: 532 LGKLVKLFNLN---LSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQ--ELGRFD 584
LGK+ NLN L NN + G +P+ ++ L L L++S N L G++PQ L RFD
Sbjct: 237 LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFD 294
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 94/221 (42%), Gaps = 28/221 (12%)
Query: 257 NSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTXX 316
N+ +G IPP I LT+L YL++ N SG IP + ++ +L LD S N LSGT+PP+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 317 XXXXXXXXXXXXXXXXGTIPPEIGSMASL-VAFDVNTNQLHGELPENISRL----VKLNK 371
G IP GS + L + ++ N+L G++P + L V L++
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 372 ----------FSVFTNN-----FSGSIPGDFGK--FSPSLINVSFSNNSFSGELPHELCS 414
F N S+ D GK S +L + NN G LP L
Sbjct: 207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266
Query: 415 GFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGN 455
L L V+ NN G +P N RFD + + N
Sbjct: 267 LKFLHSLNVSFNNLCGEIP------QGGNLQRFDVSAYANN 301
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 4/192 (2%)
Query: 1 MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
+ L++L YL + N++GAIP LS ++ + LD N L SS+P+L +
Sbjct: 97 IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF 156
Query: 61 YLNELTLEFP-SFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS 119
N ++ P S+ + T + +S N+L+G IP F NL L +++L+ N +G S
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANL-NLAFVDLSRNMLEGDAS 214
Query: 120 PNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHL 179
N + LA N + + G +G NL ++L NN G +P L QLK L L
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273
Query: 180 DLRMNALNYTIP 191
++ N L IP
Sbjct: 274 NVSFNNLCGEIP 285
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 89/196 (45%), Gaps = 26/196 (13%)
Query: 498 NRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSIS 557
N + G IP + LT+L L + ++G IP L ++ L L+ S N L+G +P SIS
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 558 NLTELAYLDLSNNKLTGDVPQELGRFDKX-XXXXXXXXXXXGEIPSNLGNLFVLQYMLDL 616
+L L + N+++G +P G F K G+IP NL + +DL
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA--FVDL 204
Query: 617 SSNSLSG--------------------TIPQELGKL---TSLEILNLSRNQLSGRIPASL 653
S N L G ++ +LGK+ +L L+L N++ G +P L
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264
Query: 654 SSMISLRSVDFSDNEL 669
+ + L S++ S N L
Sbjct: 265 TQLKFLHSLNVSFNNL 280
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 78/264 (29%), Positives = 110/264 (41%), Gaps = 34/264 (12%)
Query: 30 KVRYLDLGGNFLETPDWSKFSSMPSLTHLG-LYL---NELTLEFPSFILTCRNLTYLDLS 85
+V LDL G L P + SS+ +L +L LY+ N L P I L YL ++
Sbjct: 51 RVNNLDLSGLNLPKP-YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109
Query: 86 LNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGD 145
+SG IP+ L + + L L+ + N G L P++S L NL+ + N+ SG IP
Sbjct: 110 HTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168
Query: 146 IGSMSNL-QLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLA 204
GS S L + + N TG+IP + L NL +DL N L G N +
Sbjct: 169 YGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Query: 205 LAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEISANLIGNWTELESLQIQNNSFMGNIP 264
LA N F G+ +G L L ++NN G +P
Sbjct: 228 LAKNS---------------------LAFDLGK-----VGLSKNLNGLDLRNNRIYGTLP 261
Query: 265 PEIGLLTKLQYLFLYRNNFSGPIP 288
+ L L L + NN G IP
Sbjct: 262 QGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 123/305 (40%), Gaps = 62/305 (20%)
Query: 117 KLSPNVSKLSNLIDLRL----ATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQ 172
K P S L+NL L N GPIP I ++ L + + + + +G IP L Q
Sbjct: 64 KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 173 LKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXX 232
+K L LD NAL+ T+PP + NL + N+
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR----------------------- 160
Query: 233 FLSGEISANLIGNWTEL-ESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEI 291
+SG I + G++++L S+ I N G IPP L L ++ L RN G
Sbjct: 161 -ISGAI-PDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLF 217
Query: 292 EKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVN 351
+ + + L+ N L+ + ++G +L D+
Sbjct: 218 GSDKNTQKIHLAKNSLAFDL-------------------------GKVGLSKNLNGLDLR 252
Query: 352 TNQLHGELPENISRLVKLNKFSVFTNNFSGSIP--GDFGKFSPSLINVSFSNNSFSGELP 409
N+++G LP+ +++L L+ +V NN G IP G+ +F S +++NN P
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS----AYANNKCLCGSP 308
Query: 410 HELCS 414
C+
Sbjct: 309 LPACT 313
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 7/194 (3%)
Query: 1 MGDLSELQYLSVYD-NNLNGAIPFQLSSLRKVRYLDLGGNFLE--TPDWSKFSSMPSLTH 57
+ +L L +L + NNL G IP ++ L ++ YL + + PD+ S + +L
Sbjct: 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF--LSQIKTLVT 129
Query: 58 LGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGK 117
L N L+ P I + NL + N++SG IP+ + + ++ N+ GK
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK 189
Query: 118 LSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQ 177
+ P + L NL + L+ N G GS N Q + L NS + +G KNL
Sbjct: 190 IPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLN 247
Query: 178 HLDLRMNALNYTIP 191
LDLR N + T+P
Sbjct: 248 GLDLRNNRIYGTLP 261
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%)
Query: 600 IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISL 659
IPS+L NL L ++ N+L G IP + KLT L L ++ +SG IP LS + +L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 660 RSVDFSDNELT 670
++DFS N L+
Sbjct: 128 VTLDFSYNALS 138
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 53/106 (50%), Gaps = 6/106 (5%)
Query: 598 GEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMI 657
G IP + L L Y+ ++ ++SG IP L ++ +L L+ S N LSG +P S+SS+
Sbjct: 91 GPIPPAIAKLTQLHYLY-ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 658 SLRSVDFSDNELTELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL 703
+L + F N ++ + D FS ++ + R G++
Sbjct: 150 NLVGITFDGNR-----ISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 86/186 (46%), Gaps = 12/186 (6%)
Query: 25 LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFIL-TCRNLTYLD 83
+ L VRYL LGGN L D S + +LT+L L N+L P+ + NL L
Sbjct: 59 IQYLPNVRYLALGGNKLH--DISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115
Query: 84 LSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIP 143
L N+L L P+ +F L L YLNL NQ Q KL+NL +L L+ N+
Sbjct: 116 LVENQLQSL-PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174
Query: 144 GDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYL 203
G ++ L+ + L+ N +L +LQ++ L N + T C + YL
Sbjct: 175 GVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYL 227
Query: 204 ALAVNQ 209
+ +N+
Sbjct: 228 SEWINK 233
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 3/145 (2%)
Query: 1 MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLET-PDWSKFSSMPSLTHLG 59
+ +L+ L YL + N L L ++ L L N L++ PD F + +LT+L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD-GVFDKLTNLTYLN 139
Query: 60 LYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS 119
L N+L NLT LDLS N+L L PE +F L +L+ L L +NQ +
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL-PEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 120 PNVSKLSNLIDLRLATNKFSGPIPG 144
+L++L + L N + PG
Sbjct: 199 GVFDRLTSLQYIWLHDNPWDCTCPG 223
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 8/147 (5%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
L+ L+ L + +N L L + YL+L N L++ F + +LT L L N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 64 ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVS 123
+L L L L N+L +P+ +F L L+Y+ L +N + P +
Sbjct: 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCT-CPGIR 225
Query: 124 KLSNLIDLRLATNKFSGPIPGDIGSMS 150
LS I NK SG + GS++
Sbjct: 226 YLSEWI------NKHSGVVRNSAGSVA 246
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 59/123 (47%), Gaps = 7/123 (5%)
Query: 464 PRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNE 523
P + ++ L GN+ +IS E NL+ L L N++ LT L L L N+
Sbjct: 63 PNVRYLALGGNKL-HDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 524 LTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSI-SNLTELAYLDLSNNKLTGDVPQELGR 582
L KL L LNL++N L +PK + LT L LDLS N+L +P+ G
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQS-LPE--GV 176
Query: 583 FDK 585
FDK
Sbjct: 177 FDK 179
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/162 (30%), Positives = 63/162 (38%), Gaps = 25/162 (15%)
Query: 506 AELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYL 565
+ L LT L L L N+L KL L L L N L LT L YL
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 566 DLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNSLSGTI 625
+L++N+L +P+ G FDK L NL LDLS N L
Sbjct: 139 NLAHNQLQS-LPK--GVFDK------------------LTNL----TELDLSYNQLQSLP 173
Query: 626 PQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDN 667
KLT L+ L L +NQL + SL+ + DN
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 466 LDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELT 525
L ++ L+GNQ + + + NL L L N++ LT L L+L N+L
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146
Query: 526 GKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDK 585
KL L L+LS N L LT+L L L N+L VP G FD+
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS-VPD--GVFDR 203
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 52/144 (36%)
Query: 434 ACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNL 493
+ L+ +NL + GNQ F L + L NQ + + NL+ L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 494 QLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIP 553
L N++ LT L L L N+L KL +L +L L N L
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 554 KSISNLTELAYLDLSNNKLTGDVP 577
LT L Y+ L +N P
Sbjct: 199 GVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 126/291 (43%), Gaps = 31/291 (10%)
Query: 291 IEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDV 350
+E L +L ++ S NQL+ P I P + ++ +L +
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 114
Query: 351 NTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFS--PSLINVSFSNNSFSGEL 408
NQ+ P + L LN+ + +N S D S SL +SFS+N +
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLSFSSNQVTDLK 167
Query: 409 PHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDF 468
P L + LE L ++ N + + L +NL + NQ + +IT G+ LD
Sbjct: 168 P--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DIT-PLGILTNLDE 221
Query: 469 IRLSGNQF--VGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTG 526
+ L+GNQ +G + NL++L L N+IS P L LT+L L L +N+++
Sbjct: 222 LSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 275
Query: 527 KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVP 577
P L L L NL L+ N L P ISNL L YL L N ++ P
Sbjct: 276 ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 41/233 (17%)
Query: 441 NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI 500
NL ++ F NQ T +IT + +D L N + +I+P NL+ L L N+I
Sbjct: 64 NLTQINFSNNQLT-DITPLKNLTKLVDI--LMNNNQIADITP-LANLTNLTGLTLFNNQI 119
Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLT 560
+ P L NLT L L L SN ++ + L L L L+ S+N +T P ++NLT
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLT 173
Query: 561 ELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNS 620
L LD+S+NK++ D+ S L L L+ ++ ++N
Sbjct: 174 TLERLDISSNKVS-DI-------------------------SVLAKLTNLESLI-ATNNQ 206
Query: 621 LSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELA 673
+S P LG LT+L+ L+L+ NQL + +L+S+ +L +D ++N+++ LA
Sbjct: 207 ISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLA 255
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 135/305 (44%), Gaps = 28/305 (9%)
Query: 86 LNKLSGLIPERL-FTNLGKLEYLN-LTENQFQGKLSPNVSKLSNL---IDLRLATNKFSG 140
L++++ L +RL ++ +EYLN LT+ F +++ L NL +D+ + N+ +
Sbjct: 40 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 141 PIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNL 200
P + +++NL + LFNN T P L L NL L+L N ++ I GL T+L
Sbjct: 100 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISALSGL-TSL 153
Query: 201 SYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEIS-ANLIGNWTELESLQIQNNSF 259
L+ + NQ S ++S +++ T LESL I N+
Sbjct: 154 QQLSFSSNQVTDLKPLANLTTLERLDIS------SNKVSDISVLAKLTNLESL-IATNNQ 206
Query: 260 MGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTXXXXX 319
+ +I P +G+LT L L L N + LT+L +LDL+ NQ+S P
Sbjct: 207 ISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGL 260
Query: 320 XXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNF 379
I P G + +L ++N NQL P IS L L +++ NN
Sbjct: 261 TKLTELKLGANQISNISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 317
Query: 380 SGSIP 384
S P
Sbjct: 318 SDISP 322
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 1 MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHL-G 59
+ L+ L L + +N ++ P LS L K+ L LG N + S S + LT L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-----SNISPLAGLTALTN 287
Query: 60 LYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS 119
L LNE LE S I +NLTYL L N +S + P T L +L + N K+S
Sbjct: 288 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSN-------NKVS 340
Query: 120 PNVSKLSNLIDL 131
+VS L+NL ++
Sbjct: 341 -DVSSLANLTNI 351
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 42/235 (17%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK 137
NLT L L N+++ + P + TNL +LE + T + +S L++L L ++N+
Sbjct: 108 NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLSFSSNQ 162
Query: 138 FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC 197
+ P + +++ L+ +++ +N + S L +L NL+ L N ++ P LG+
Sbjct: 163 VTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGIL 216
Query: 198 TNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEISANLIGNWTELESLQIQNN 257
TNL L+L NQ + + T L L + NN
Sbjct: 217 TNLDELSLNGNQLKDIGT---------------------------LASLTNLTDLDLANN 249
Query: 258 SFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIP 312
+ N+ P G LTKL L L N S P + LT+L NL+L+ NQL P
Sbjct: 250 Q-ISNLAPLSG-LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Score = 36.6 bits (83), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 99/226 (43%), Gaps = 35/226 (15%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
L+ LQ LS N + P L++L + LD+ N + D S + + +L L N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN--KVSDISVLAKLTNLESLIATNN 205
Query: 64 ELTLEFPSFILT--------------------CRNLTYLDLSLNKLSGLIPERLFTNLGK 103
+++ P ILT NLT LDL+ N++S L P + L K
Sbjct: 206 QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTK 262
Query: 104 LEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT 163
L L L NQ +SP ++ L+ L +L L N+ P I ++ NL + L+ N+ +
Sbjct: 263 LTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 318
Query: 164 GQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQ 209
P S L LQ L N ++ L TN+++L+ NQ
Sbjct: 319 DISPVS--SLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHNQ 360
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 126/291 (43%), Gaps = 31/291 (10%)
Query: 291 IEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDV 350
+E L +L ++ S NQL+ P I P + ++ +L +
Sbjct: 59 VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 114
Query: 351 NTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFS--PSLINVSFSNNSFSGEL 408
NQ+ P + L LN+ + +N S D S SL +SFS+N +
Sbjct: 115 FNNQITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLSFSSNQVTDLK 167
Query: 409 PHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDF 468
P L + LE L ++ N + + L +NL + NQ + +IT G+ LD
Sbjct: 168 P--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DIT-PLGILTNLDE 221
Query: 469 IRLSGNQF--VGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTG 526
+ L+GNQ +G + NL++L L N+IS P L LT+L L L +N+++
Sbjct: 222 LSLNGNQLKDIGTL----ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 275
Query: 527 KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVP 577
P L L L NL L+ N L P ISNL L YL L N ++ P
Sbjct: 276 ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 322
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 41/233 (17%)
Query: 441 NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI 500
NL ++ F NQ T +IT + +D L N + +I+P NL+ L L N+I
Sbjct: 64 NLTQINFSNNQLT-DITPLKNLTKLVDI--LMNNNQIADITP-LANLTNLTGLTLFNNQI 119
Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLT 560
+ P L NLT L L L SN ++ + L L L L+ S+N +T P ++NLT
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLT 173
Query: 561 ELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNS 620
L LD+S+NK++ D+ S L L L+ ++ ++N
Sbjct: 174 TLERLDISSNKVS-DI-------------------------SVLAKLTNLESLI-ATNNQ 206
Query: 621 LSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELA 673
+S P LG LT+L+ L+L+ NQL + +L+S+ +L +D ++N+++ LA
Sbjct: 207 ISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLA 255
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 135/305 (44%), Gaps = 28/305 (9%)
Query: 86 LNKLSGLIPERL-FTNLGKLEYLN-LTENQFQGKLSPNVSKLSNL---IDLRLATNKFSG 140
L++++ L +RL ++ +EYLN LT+ F +++ L NL +D+ + N+ +
Sbjct: 40 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 141 PIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNL 200
P + +++NL + LFNN T P L L NL L+L N ++ I GL T+L
Sbjct: 100 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISALSGL-TSL 153
Query: 201 SYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEIS-ANLIGNWTELESLQIQNNSF 259
L+ + NQ S ++S +++ T LESL I N+
Sbjct: 154 QQLSFSSNQVTDLKPLANLTTLERLDIS------SNKVSDISVLAKLTNLESL-IATNNQ 206
Query: 260 MGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTXXXXX 319
+ +I P +G+LT L L L N + LT+L +LDL+ NQ+S P
Sbjct: 207 ISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGL 260
Query: 320 XXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNF 379
I P G + +L ++N NQL P IS L L +++ NN
Sbjct: 261 TKLTELKLGANQISNISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 317
Query: 380 SGSIP 384
S P
Sbjct: 318 SDISP 322
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 1 MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHL-G 59
+ L+ L L + +N ++ P LS L K+ L LG N + S S + LT L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-----SNISPLAGLTALTN 287
Query: 60 LYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS 119
L LNE LE S I +NLTYL L N +S + P T L +L + + K+S
Sbjct: 288 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF-------YNNKVS 340
Query: 120 PNVSKLSNLIDL 131
+VS L+NL ++
Sbjct: 341 -DVSSLANLTNI 351
Score = 38.1 bits (87), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 42/235 (17%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK 137
NLT L L N+++ + P + TNL +LE + T + +S L++L L ++N+
Sbjct: 108 NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLSFSSNQ 162
Query: 138 FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC 197
+ P + +++ L+ +++ +N + S L +L NL+ L N ++ P LG+
Sbjct: 163 VTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGIL 216
Query: 198 TNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEISANLIGNWTELESLQIQNN 257
TNL L+L NQ + + T L L + NN
Sbjct: 217 TNLDELSLNGNQLKDIGT---------------------------LASLTNLTDLDLANN 249
Query: 258 SFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIP 312
+ N+ P G LTKL L L N S P + LT+L NL+L+ NQL P
Sbjct: 250 Q-ISNLAPLSG-LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 37/227 (16%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
L+ LQ LS N + P L++L + LD+ N + D S + + +L L N
Sbjct: 150 LTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSN--KVSDISVLAKLTNLESLIATNN 205
Query: 64 ELTLEFPSFILT--------------------CRNLTYLDLSLNKLSGLIPERLFTNLGK 103
+++ P ILT NLT LDL+ N++S L P + L K
Sbjct: 206 QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP---LSGLTK 262
Query: 104 LEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT 163
L L L NQ +SP ++ L+ L +L L N+ P I ++ NL + L+ N+ +
Sbjct: 263 LTELKLGANQI-SNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 318
Query: 164 GQIP-SSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQ 209
P SSL +L+ L + +++ ++ L TN+++L+ NQ
Sbjct: 319 DISPVSSLTKLQRLFFYNNKVSDVS-----SLANLTNINWLSAGHNQ 360
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 87/200 (43%), Gaps = 8/200 (4%)
Query: 5 SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
++ + L + N L+ L K+R L L N L+T F + +L L + N+
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 65 LTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSK 124
L NL L L N+L L P R+F +L KL YL+L N+ Q K
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155
Query: 125 LSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 184
L++L +LRL N+ G ++ L+ ++L NN + L+ L+ L L+ N
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Query: 185 ALNYTIPPELGLCTNLSYLA 204
+ T C + Y+A
Sbjct: 216 PWDCT-------CNGIIYMA 228
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/96 (40%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 489 NLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHL 548
NL+ L+LDRN++ P +LT+L LSL NEL KL L L L NN L
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 549 TGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFD 584
+ LTEL L L NN+L VP+ G FD
Sbjct: 170 KRVPEGAFDKLTELKTLKLDNNQLKR-VPE--GAFD 202
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 1/159 (0%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
L++L+ L + DN L L+ + L + N L+ F + +L L L N
Sbjct: 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119
Query: 64 ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVS 123
+L P + LTYL L N+L L P+ +F L L+ L L NQ +
Sbjct: 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSL-PKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178
Query: 124 KLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSF 162
KL+ L L+L N+ G S+ L++++L N +
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 5/147 (3%)
Query: 440 SNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNR 499
++ ++ N+ + +KAF +L + L+ N+ + + E +NL L + N+
Sbjct: 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96
Query: 500 ISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSI-SN 558
+ L L L LD N+L P L KL L+L N L +PK +
Sbjct: 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDK 155
Query: 559 LTELAYLDLSNNKLTGDVPQELGRFDK 585
LT L L L NN+L VP+ G FDK
Sbjct: 156 LTSLKELRLYNNQLKR-VPE--GAFDK 179
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 66/169 (39%), Gaps = 30/169 (17%)
Query: 500 ISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNL 559
+ GI EL NL L V N+L +LV L L L N L P+ +L
Sbjct: 76 LPAGIFKELKNLETLWVTD---NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132
Query: 560 TELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSN 619
T+L YL L N+L +P+ G FDK L L +N
Sbjct: 133 TKLTYLSLGYNELQS-LPK--GVFDKLTSLKE----------------------LRLYNN 167
Query: 620 SLSGTIPQELGKLTSLEILNLSRNQLSGRIP-ASLSSMISLRSVDFSDN 667
L KLT L+ L L NQL R+P + S+ L+ + +N
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 54/131 (41%), Gaps = 1/131 (0%)
Query: 79 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKF 138
L L L+ NKL L P +F L LE L +T+N+ Q +L NL +LRL N+
Sbjct: 63 LRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Query: 139 SGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCT 198
P S++ L + L N +L +L+ L L N L T
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181
Query: 199 NLSYLALAVNQ 209
L L L NQ
Sbjct: 182 ELKTLKLDNNQ 192
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 53/128 (41%), Gaps = 25/128 (19%)
Query: 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP 141
LDL NKLS L P + F L KL L L +N+ Q + +L NL L + NK
Sbjct: 42 LDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA- 99
Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLS 201
+P + +F+ QL NL L L N L P T L+
Sbjct: 100 LP-----------IGVFD------------QLVNLAELRLDRNQLKSLPPRVFDSLTKLT 136
Query: 202 YLALAVNQ 209
YL+L N+
Sbjct: 137 YLSLGYNE 144
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 600 IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISL 659
IPSN+ LDL SN LS + +LT L +L L+ N+L + +L
Sbjct: 31 IPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 660 RSVDFSDNELTELAV 674
++ +DN+L L +
Sbjct: 88 ETLWVTDNKLQALPI 102
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 249 LESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQL 307
L L++ N + ++PP + LTKL YL L N +KLTSL+ L L NQL
Sbjct: 111 LAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169
Query: 308 S 308
Sbjct: 170 K 170
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 28 LRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLD---L 84
L K+ +L+L N L+T F + L LGL N+L P + +LT LD L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVF--DHLTQLDKLYL 114
Query: 85 SLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPG 144
N+L L P +F L KL+ L L NQ Q + KL+NL L L+TN+ G
Sbjct: 115 GGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
Query: 145 DIGSMSNLQLVELFNNSF 162
+ LQ + LF N F
Sbjct: 174 AFDRLGKLQTITLFGNQF 191
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 1/154 (0%)
Query: 34 LDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLI 93
LDL L T + F + LT L L N+L L L L+ N+L+ L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL- 98
Query: 94 PERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQ 153
P +F +L +L+ L L NQ + S +L+ L +LRL TN+ G ++NLQ
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 154 LVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN 187
+ L N + +L LQ + L N +
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 3 DLSELQYLSVYDNNLNGAIPFQL-SSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
DL+EL L + +N L ++P + L ++ L LGGN L++ F + L L L
Sbjct: 81 DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 62 LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQF 114
N+L NL L LS N+L +P F LGKL+ + L NQF
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQF 191
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 15/176 (8%)
Query: 498 NRISGGIPA--ELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKS 555
+ + GIPA E +L G+ +L G L KL LNL N L
Sbjct: 27 DSVPSGIPADTEKLDLQSTGLATLSDATFRG--------LTKLTWLNLDYNQLQTLSAGV 78
Query: 556 ISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXX--XXXXGEIPSNLGNLFVLQYM 613
+LTEL L L+NN+L +P LG FD +PS + +
Sbjct: 79 FDDLTELGTLGLANNQL-ASLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 614 LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNEL 669
L L++N L KLT+L+ L+LS NQL + + L+++ N+
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 52/128 (40%), Gaps = 1/128 (0%)
Query: 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP 141
LDL L+ L + F L KL +LNL NQ Q + L+ L L LA N+ +
Sbjct: 40 LDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLS 201
G ++ L + L N +L L+ L L N L TNL
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 202 YLALAVNQ 209
L+L+ NQ
Sbjct: 159 TLSLSTNQ 166
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 28/147 (19%)
Query: 238 ISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNFSGPIPSEI-EKLT 295
+SA + + TEL +L + NN + ++P + LT+L L+L N +PS + ++LT
Sbjct: 74 LSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLT 131
Query: 296 SLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQL 355
L+ L L+ NQL +IP + +L ++TNQL
Sbjct: 132 KLKELRLNTNQLQ-SIP-----------------------AGAFDKLTNLQTLSLSTNQL 167
Query: 356 HGELPENISRLVKLNKFSVFTNNFSGS 382
RL KL ++F N F S
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGNQFDCS 194
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 65/138 (47%), Gaps = 7/138 (5%)
Query: 28 LRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLD---L 84
L K+ +L+L N L+T F + L LGL N+L P + +LT LD L
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVF--DHLTQLDKLYL 114
Query: 85 SLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPG 144
N+L L P +F L KL+ L L NQ Q + KL+NL L L+TN+ G
Sbjct: 115 GGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173
Query: 145 DIGSMSNLQLVELFNNSF 162
+ LQ + LF N F
Sbjct: 174 AFDRLGKLQTITLFGNQF 191
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 67/154 (43%), Gaps = 1/154 (0%)
Query: 34 LDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLI 93
LDL L T + F + LT L L N+L L L L+ N+L+ L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL- 98
Query: 94 PERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQ 153
P +F +L +L+ L L NQ + S +L+ L +LRL TN+ G ++NLQ
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 154 LVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN 187
+ L N + +L LQ + L N +
Sbjct: 159 TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 54/113 (47%), Gaps = 3/113 (2%)
Query: 3 DLSELQYLSVYDNNLNGAIPFQL-SSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLY 61
DL+EL L + +N L ++P + L ++ L LGGN L++ F + L L L
Sbjct: 81 DLTELGTLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLN 139
Query: 62 LNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQF 114
N+L NL L LS N+L +P F LGKL+ + L NQF
Sbjct: 140 TNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGNQF 191
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 72/176 (40%), Gaps = 15/176 (8%)
Query: 498 NRISGGIPA--ELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKS 555
+ + GIPA E +L G+ +L G L KL LNL N L
Sbjct: 27 DSVPSGIPADTEKLDLQSTGLATLSDATFRG--------LTKLTWLNLDYNQLQTLSAGV 78
Query: 556 ISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXX--XXXXGEIPSNLGNLFVLQYM 613
+LTEL L L+NN+L +P LG FD +PS + +
Sbjct: 79 FDDLTELGTLGLANNQL-ASLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 614 LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNEL 669
L L++N L KLT+L+ L+LS NQL + + L+++ N+
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 52/128 (40%), Gaps = 1/128 (0%)
Query: 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP 141
LDL L+ L + F L KL +LNL NQ Q + L+ L L LA N+ +
Sbjct: 40 LDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLS 201
G ++ L + L N +L L+ L L N L TNL
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158
Query: 202 YLALAVNQ 209
L+L+ NQ
Sbjct: 159 TLSLSTNQ 166
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 28/147 (19%)
Query: 238 ISANLIGNWTELESLQIQNNSFMGNIPPEI-GLLTKLQYLFLYRNNFSGPIPSEI-EKLT 295
+SA + + TEL +L + NN + ++P + LT+L L+L N +PS + ++LT
Sbjct: 74 LSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLT 131
Query: 296 SLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQL 355
L+ L L+ NQL +IP + +L ++TNQL
Sbjct: 132 KLKELRLNTNQLQ-SIP-----------------------AGAFDKLTNLQTLSLSTNQL 167
Query: 356 HGELPENISRLVKLNKFSVFTNNFSGS 382
RL KL ++F N F S
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGNQFDCS 194
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 42/233 (18%)
Query: 441 NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI 500
NL ++ F NQ T +IT + +D L N + +I+P NL+ L L N+I
Sbjct: 64 NLTQINFSNNQLT-DITPLKNLTKLVDI--LMNNNQIADITP-LANLTNLTGLTLFNNQI 119
Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLT 560
+ P L NLT L L L SN ++ + L L L LN N +T P ++NLT
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFGN-QVTDLKP--LANLT 172
Query: 561 ELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNS 620
L LD+S+NK++ D+ S L L L+ ++ ++N
Sbjct: 173 TLERLDISSNKVS-DI-------------------------SVLAKLTNLESLI-ATNNQ 205
Query: 621 LSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELA 673
+S P LG LT+L+ L+L+ NQL + +L+S+ +L +D ++N+++ LA
Sbjct: 206 ISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLA 254
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 78/163 (47%), Gaps = 16/163 (9%)
Query: 417 ALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQF 476
LE L ++ N + + L +NL + NQ + +IT G+ LD + L+GNQ
Sbjct: 173 TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DIT-PLGILTNLDELSLNGNQL 228
Query: 477 --VGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGK 534
+G + NL++L L N+IS P L LT+L L L +N+++ P L
Sbjct: 229 KDIGTL----ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 280
Query: 535 LVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVP 577
L L NL L+ N L P ISNL L YL L N ++ P
Sbjct: 281 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 131/305 (42%), Gaps = 29/305 (9%)
Query: 86 LNKLSGLIPERL-FTNLGKLEYLN-LTENQFQGKLSPNVSKLSNL---IDLRLATNKFSG 140
L++++ L +RL ++ +EYLN LT+ F +++ L NL +D+ + N+ +
Sbjct: 40 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 141 PIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNL 200
P + +++NL + LFNN T P L L NL L+L N ++ ++ + L
Sbjct: 100 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGL 150
Query: 201 SYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEIS-ANLIGNWTELESLQIQNNSF 259
+ L Q S ++S +++ T LESL I N+
Sbjct: 151 TSLQ----QLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQ 205
Query: 260 MGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTXXXXX 319
+ +I P +G+LT L L L N + LT+L +LDL+ NQ+S P
Sbjct: 206 ISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGL 259
Query: 320 XXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNF 379
I P G + +L ++N NQL P IS L L +++ NN
Sbjct: 260 TKLTELKLGANQISNISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 316
Query: 380 SGSIP 384
S P
Sbjct: 317 SDISP 321
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 1 MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHL-G 59
+ L+ L L + +N ++ P LS L K+ L LG N + S S + LT L
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-----SNISPLAGLTALTN 286
Query: 60 LYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS 119
L LNE LE S I +NLTYL L N +S + P T L +L + + K+S
Sbjct: 287 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF-------YNNKVS 339
Query: 120 PNVSKLSNLIDL 131
+VS L+NL ++
Sbjct: 340 -DVSSLANLTNI 350
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 104/237 (43%), Gaps = 47/237 (19%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLAT-- 135
NLT L L N+++ + P + TNL +LE L+ N ++S LS L L+
Sbjct: 108 NLTGLTLFNNQITDIDPLKNLTNLNRLE---LSSNTIS-----DISALSGLTSLQQLNFG 159
Query: 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELG 195
N+ + P + +++ L+ +++ +N + S L +L NL+ L N ++ P LG
Sbjct: 160 NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LG 213
Query: 196 LCTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEISANLIGNWTELESLQIQ 255
+ TNL L+L NQ + + T L L +
Sbjct: 214 ILTNLDELSLNGNQLKDIGT---------------------------LASLTNLTDLDLA 246
Query: 256 NNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIP 312
NN + N+ P G LTKL L L N S P + LT+L NL+L+ NQL P
Sbjct: 247 NNQ-ISNLAPLSG-LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 299
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 59/133 (44%), Gaps = 25/133 (18%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEY-------------------LNLTENQFQGKL 118
NLT LDL+ N++S L P T L +L+ L L ENQ + +
Sbjct: 239 NLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLE-DI 297
Query: 119 SPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQH 178
SP +S L NL L L N S P + S++ LQ + +NN + SSL L N+
Sbjct: 298 SP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINW 352
Query: 179 LDLRMNALNYTIP 191
L N ++ P
Sbjct: 353 LSAGHNQISDLTP 365
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 114/233 (48%), Gaps = 42/233 (18%)
Query: 441 NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI 500
NL ++ F NQ T +IT + +D L N + +I+P NL+ L L N+I
Sbjct: 64 NLTQINFSNNQLT-DITPLKNLTKLVDI--LMNNNQIADITP-LANLTNLTGLTLFNNQI 119
Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLT 560
+ P L NLT L L L SN ++ + L L L LN N +T P ++NLT
Sbjct: 120 TDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFGN-QVTDLKP--LANLT 172
Query: 561 ELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNS 620
L LD+S+NK++ D+ S L L L+ ++ ++N
Sbjct: 173 TLERLDISSNKVS-DI-------------------------SVLAKLTNLESLI-ATNNQ 205
Query: 621 LSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELA 673
+S P LG LT+L+ L+L+ NQL + +L+S+ +L +D ++N+++ LA
Sbjct: 206 ISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLA 254
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 79/163 (48%), Gaps = 16/163 (9%)
Query: 417 ALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQF 476
LE L ++ N + + L +NL + NQ + +IT G+ LD + L+GNQ
Sbjct: 173 TLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DIT-PLGILTNLDELSLNGNQL 228
Query: 477 --VGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGK 534
+G ++ NL++L L N+IS P L LT+L L L +N+++ P L
Sbjct: 229 KDIGTLA----SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAG 280
Query: 535 LVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVP 577
L L NL L+ N L P ISNL L YL L N ++ P
Sbjct: 281 LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 321
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 131/305 (42%), Gaps = 29/305 (9%)
Query: 86 LNKLSGLIPERL-FTNLGKLEYLN-LTENQFQGKLSPNVSKLSNL---IDLRLATNKFSG 140
L++++ L +RL ++ +EYLN LT+ F +++ L NL +D+ + N+ +
Sbjct: 40 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 141 PIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNL 200
P + +++NL + LFNN T P L L NL L+L N ++ ++ + L
Sbjct: 100 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGL 150
Query: 201 SYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEIS-ANLIGNWTELESLQIQNNSF 259
+ L Q S ++S +++ T LESL I N+
Sbjct: 151 TSLQ----QLNFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQ 205
Query: 260 MGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTXXXXX 319
+ +I P +G+LT L L L N + LT+L +LDL+ NQ+S P
Sbjct: 206 ISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGL 259
Query: 320 XXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNF 379
I P G + +L ++N NQL P IS L L +++ NN
Sbjct: 260 TKLTELKLGANQISNISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 316
Query: 380 SGSIP 384
S P
Sbjct: 317 SDISP 321
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 1 MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHL-G 59
+ L+ L L + +N ++ P LS L K+ L LG N + S S + LT L
Sbjct: 234 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-----SNISPLAGLTALTN 286
Query: 60 LYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS 119
L LNE LE S I +NLTYL L N +S + P T L +L + N K+S
Sbjct: 287 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSN-------NKVS 339
Query: 120 PNVSKLSNLIDL 131
+VS L+NL ++
Sbjct: 340 -DVSSLANLTNI 350
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 104/237 (43%), Gaps = 47/237 (19%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLAT-- 135
NLT L L N+++ + P + TNL +LE L+ N ++S LS L L+
Sbjct: 108 NLTGLTLFNNQITDIDPLKNLTNLNRLE---LSSNTIS-----DISALSGLTSLQQLNFG 159
Query: 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELG 195
N+ + P + +++ L+ +++ +N + S L +L NL+ L N ++ P LG
Sbjct: 160 NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LG 213
Query: 196 LCTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEISANLIGNWTELESLQIQ 255
+ TNL L+L NQ + + T L L +
Sbjct: 214 ILTNLDELSLNGNQLKDIGT---------------------------LASLTNLTDLDLA 246
Query: 256 NNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIP 312
NN + N+ P G LTKL L L N S P + LT+L NL+L+ NQL P
Sbjct: 247 NNQ-ISNLAPLSG-LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 299
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK 137
NLT LDL+ N++S L P + L KL L L NQ +SP ++ L+ L +L L N+
Sbjct: 239 NLTDLDLANNQISNLAP---LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQ 293
Query: 138 FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC 197
P I ++ NL + L+ N+ + P S L LQ L N ++ L
Sbjct: 294 LEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFSNNKVSDV--SSLANL 347
Query: 198 TNLSYLALAVNQ 209
TN+++L+ NQ
Sbjct: 348 TNINWLSAGHNQ 359
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 66/162 (40%), Gaps = 27/162 (16%)
Query: 25 LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDL 84
+ L VRYL LGGN L S++ LT NLTYL L
Sbjct: 59 IQYLPNVRYLALGGNKLH-----DISALKELT---------------------NLTYLIL 92
Query: 85 SLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPG 144
+ N+L L P +F L L+ L L ENQ Q KL+NL L L N+ G
Sbjct: 93 TGNQLQSL-PNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKG 151
Query: 145 DIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 186
++NL ++L NN +L L+ L L N L
Sbjct: 152 VFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQL 193
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 57/132 (43%), Gaps = 3/132 (2%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK 137
N+ YL L NKL + + TNL YL LT NQ Q + KL+NL +L L N+
Sbjct: 64 NVRYLALGGNKLHDISALKELTNL---TYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 138 FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC 197
G ++NL + L++N +L NL LDL N L
Sbjct: 121 LQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL 180
Query: 198 TNLSYLALAVNQ 209
T L L+L NQ
Sbjct: 181 TQLKQLSLNDNQ 192
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 3/139 (2%)
Query: 1 MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLET-PDWSKFSSMPSLTHLG 59
+ +L+ L YL + N L L ++ L L N L++ PD F + +LT+L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD-GVFDKLTNLTYLY 139
Query: 60 LYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS 119
LY N+L NLT LDL N+L L PE +F L +L+ L+L +NQ +
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSL-PEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 120 PNVSKLSNLIDLRLATNKF 138
+L++L + L N +
Sbjct: 199 GVFDRLTSLTHIWLLNNPW 217
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 3/120 (2%)
Query: 466 LDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELT 525
L ++ L+GNQ + + + NL L L N++ LT L L L N+L
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ 146
Query: 526 GKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDK 585
KL L L+L NN L LT+L L L++N+L VP G FD+
Sbjct: 147 SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS-VPD--GVFDR 203
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 6/140 (4%)
Query: 434 ACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNL 493
+ L+ +NL + GNQ F L + L NQ + + NL+ L
Sbjct: 79 SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 494 QLDRNRISG---GIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTG 550
L N++ G+ +L NLTRL LD+N+L KL +L L+L++N L
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRL---DLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKS 195
Query: 551 EIPKSISNLTELAYLDLSNN 570
LT L ++ L NN
Sbjct: 196 VPDGVFDRLTSLTHIWLLNN 215
Score = 33.5 bits (75), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%)
Query: 270 LTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQL 307
LT L YL+LY N +KLT+L LDL NQL
Sbjct: 132 LTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQL 169
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 464 PRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNE 523
P + ++ L GN+ + +IS E NL+ L L N++ LT L L L N+
Sbjct: 63 PNVRYLALGGNK-LHDISA-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 524 LTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSI-SNLTELAYLDLSNNKLTGDVPQELGR 582
L KL L L L +N L +PK + LT L LDL NN+L +P+ G
Sbjct: 121 LQSLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKLTNLTRLDLDNNQLQS-LPE--GV 176
Query: 583 FDK 585
FDK
Sbjct: 177 FDK 179
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Query: 270 LTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXX 329
LT L YL L N +KLT+L+ L L NQL ++P
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYH 142
Query: 330 XXXGTIPPEI-GSMASLVAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNFSGSIPGDF 387
++P + + +L D++ NQL LPE + +L +L + S+ N G F
Sbjct: 143 NQLQSLPKGVFDKLTNLTRLDLDNNQLQS-LPEGVFDKLTQLKQLSLNDNQLKSVPDGVF 201
Query: 388 GKFSPSLINVSFSNNSF 404
+ + SL ++ NN +
Sbjct: 202 DRLT-SLTHIWLLNNPW 217
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 59/160 (36%), Gaps = 16/160 (10%)
Query: 555 SISNLTELAYLDLSNNKLTGDVPQELGRFDKXX--XXXXXXXXXXGEIPSNLGNLFVLQY 612
++ LT L YL L+ N+L +P G FDK +P + +
Sbjct: 80 ALKELTNLTYLILTGNQLQS-LPN--GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136
Query: 613 MLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNE---- 668
L L N L KLT+L L+L NQL + L+ + +DN+
Sbjct: 137 YLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Query: 669 -------LTELAVTMRVTDKCDVFSFGVVALEVMMGRHPG 701
LT L + + D ++ L + +HPG
Sbjct: 197 PDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWISQHPG 236
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK 137
+LT L L NKL L P +F L L YLNL+ NQ Q + KL+ L +L L TN+
Sbjct: 53 SLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ 111
Query: 138 FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC 197
G ++ L+ + L+ N +L +LQ++ L N + T P
Sbjct: 112 LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------ 165
Query: 198 TNLSYLALAVNQ 209
+ YL+ +N+
Sbjct: 166 -GIRYLSEWINK 176
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 65/163 (39%), Gaps = 25/163 (15%)
Query: 5 SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
++ YL + N+L L + L LGGN L++ F+ + SLT+L L N+
Sbjct: 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 65 LTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSK 124
L +P +F L +L+ L L NQ Q K
Sbjct: 88 LQ-------------------------SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDK 122
Query: 125 LSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIP 167
L+ L DLRL N+ G +++LQ + L +N + P
Sbjct: 123 LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 73/206 (35%), Gaps = 46/206 (22%)
Query: 497 RNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSI 556
R + GIPA+ L L++N L +L L L L N L +P +
Sbjct: 19 RTSVPTGIPAQTT------YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGV 71
Query: 557 SN-LTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLD 615
N LT L YL+LS N+L +P G FDK L
Sbjct: 72 FNKLTSLTYLNLSTNQLQS-LPN--GVFDKLTQLKE----------------------LA 106
Query: 616 LSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAVT 675
L++N L KLT L+ L L +NQL + SL+ + DN
Sbjct: 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW------ 160
Query: 676 MRVTDKCDVFSFGVVALEVMMGRHPG 701
D G+ L + +H G
Sbjct: 161 -------DCTCPGIRYLSEWINKHSG 179
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 8/123 (6%)
Query: 28 LRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLN 87
L + YL+L N L++ F + L L L N+L L L L N
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134
Query: 88 KLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIG 147
+L +P+ +F L L+Y+ L +N + P + LS I NK SG + G
Sbjct: 135 QLKS-VPDGVFDRLTSLQYIWLHDNPWDCTC-PGIRYLSEWI------NKHSGVVRNSAG 186
Query: 148 SMS 150
S++
Sbjct: 187 SVA 189
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 85/305 (27%), Positives = 134/305 (43%), Gaps = 28/305 (9%)
Query: 86 LNKLSGLIPERL-FTNLGKLEYLN-LTENQFQGKLSPNVSKLSNL---IDLRLATNKFSG 140
L++++ L +RL ++ +EYLN LT+ F +++ L NL +D+ + N+ +
Sbjct: 40 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 99
Query: 141 PIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNL 200
P + +++NL + LFNN T P L L NL L+L N ++ I GL T+L
Sbjct: 100 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISALSGL-TSL 153
Query: 201 SYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEIS-ANLIGNWTELESLQIQNNSF 259
L + NQ S ++S +++ T LESL I N+
Sbjct: 154 QQLNFSSNQVTDLKPLANLTTLERLDIS------SNKVSDISVLAKLTNLESL-IATNNQ 206
Query: 260 MGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTXXXXX 319
+ +I P +G+LT L L L N + LT+L +LDL+ NQ+S P
Sbjct: 207 ISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGL 260
Query: 320 XXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNF 379
I P G + +L ++N NQL P IS L L +++ NN
Sbjct: 261 TKLTELKLGANQISNISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 317
Query: 380 SGSIP 384
S P
Sbjct: 318 SDISP 322
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 1 MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHL-G 59
+ L+ L L + +N ++ P LS L K+ L LG N + S S + LT L
Sbjct: 235 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-----SNISPLAGLTALTN 287
Query: 60 LYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS 119
L LNE LE S I +NLTYL L N +S + P T L +L + + K+S
Sbjct: 288 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF-------YNNKVS 340
Query: 120 PNVSKLSNLIDL 131
+VS L+NL ++
Sbjct: 341 -DVSSLANLTNI 351
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 90/184 (48%), Gaps = 14/184 (7%)
Query: 394 LINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFT 453
L+++ +NN + P L + L LT+ N T P L+N +NLNR+ N +
Sbjct: 87 LVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS 142
Query: 454 GNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTR 513
+I+ G+ L + S NQ V ++ P L L + N++S + L LT
Sbjct: 143 -DISALSGLT-SLQQLNFSSNQ-VTDLKP-LANLTTLERLDISSNKVSD--ISVLAKLTN 196
Query: 514 LGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLT 573
L L +N+++ P LG L L L+L+ N L + ++++LT L LDL+NN+++
Sbjct: 197 LESLIATNNQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQIS 252
Query: 574 GDVP 577
P
Sbjct: 253 NLAP 256
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 42/235 (17%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK 137
NLT L L N+++ + P + TNL +LE + T + +S L++L L ++N+
Sbjct: 108 NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA-----LSGLTSLQQLNFSSNQ 162
Query: 138 FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC 197
+ P + +++ L+ +++ +N + S L +L NL+ L N ++ P LG+
Sbjct: 163 VTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGIL 216
Query: 198 TNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEISANLIGNWTELESLQIQNN 257
TNL L+L NQ + + T L L + NN
Sbjct: 217 TNLDELSLNGNQLKDIGT---------------------------LASLTNLTDLDLANN 249
Query: 258 SFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIP 312
+ N+ P G LTKL L L N S P + LT+L NL+L+ NQL P
Sbjct: 250 Q-ISNLAPLSG-LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 300
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 84/185 (45%), Gaps = 45/185 (24%)
Query: 513 RLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKL 572
RLG+ S+D E L L +N SNN LT P + NLT+L + ++NN++
Sbjct: 50 RLGIKSIDGVEY----------LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI 97
Query: 573 TGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKL 632
P +NL NL L L +N ++ P L L
Sbjct: 98 ADITPL-----------------------ANLTNL----TGLTLFNNQITDIDP--LKNL 128
Query: 633 TSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELAVTMRVT--DKCDVFSFGVV 690
T+L L LS N +S ++LS + SL+ ++FS N++T+L +T ++ D+ S V
Sbjct: 129 TNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVS 186
Query: 691 ALEVM 695
+ V+
Sbjct: 187 DISVL 191
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 93/227 (40%), Gaps = 49/227 (21%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
L+ LQ L+ N + P L++L + LD+ N + D S + + +L L N
Sbjct: 150 LTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSN--KVSDISVLAKLTNLESLIATNN 205
Query: 64 ELTLEFPSFILT--------------------CRNLTYLDLSLNKLSGLIPERLFTNLGK 103
+++ P ILT NLT LDL+ N++S L P T L +
Sbjct: 206 QISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE 265
Query: 104 LEY-------------------LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPG 144
L+ L L ENQ + +SP +S L NL L L N S P
Sbjct: 266 LKLGANQISNISPLAGLTALTNLELNENQLE-DISP-ISNLKNLTYLTLYFNNISDISP- 322
Query: 145 DIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIP 191
+ S++ LQ + +NN + SSL L N+ L N ++ P
Sbjct: 323 -VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP 366
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 124/291 (42%), Gaps = 32/291 (10%)
Query: 291 IEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDV 350
+E L +L ++ S NQL+ P I P + ++ +L +
Sbjct: 64 VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119
Query: 351 NTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFS--PSLINVSFSNNSFSGEL 408
NQ+ P + L LN+ + +N S D S SL +SF N +
Sbjct: 120 FNNQITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLSFGNQVTDLK- 171
Query: 409 PHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDF 468
L + LE L ++ N + + L +NL + NQ + +IT G+ LD
Sbjct: 172 --PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DIT-PLGILTNLDE 225
Query: 469 IRLSGNQF--VGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTG 526
+ L+GNQ +G ++ NL++L L N+IS P L LT+L L L +N+++
Sbjct: 226 LSLNGNQLKDIGTLA----SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279
Query: 527 KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVP 577
P L L L NL L+ N L P ISNL L YL L N ++ P
Sbjct: 280 ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 46/235 (19%)
Query: 441 NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI 500
NL ++ F NQ T +IT + +D L N + +I+P NL+ L L N+I
Sbjct: 69 NLTQINFSNNQLT-DITPLKNLTKLVDI--LMNNNQIADITP-LANLTNLTGLTLFNNQI 124
Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLN-LS-NNHLTGEIPKSISN 558
+ P L NLT L L L SN ++ D+ L L +L LS N +T P ++N
Sbjct: 125 TDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLSFGNQVTDLKP--LAN 175
Query: 559 LTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSS 618
LT L LD+S+NK++ D+ S L L L+ ++ ++
Sbjct: 176 LTTLERLDISSNKVS-DI-------------------------SVLAKLTNLESLI-ATN 208
Query: 619 NSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELA 673
N +S P LG LT+L+ L+L+ NQL + +L+S+ +L +D ++N+++ LA
Sbjct: 209 NQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLA 259
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 131/305 (42%), Gaps = 29/305 (9%)
Query: 86 LNKLSGLIPERL-FTNLGKLEYLN-LTENQFQGKLSPNVSKLSNL---IDLRLATNKFSG 140
L++++ L +RL ++ +EYLN LT+ F +++ L NL +D+ + N+ +
Sbjct: 45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 104
Query: 141 PIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNL 200
P + +++NL + LFNN T P L L NL L+L N ++ ++ + L
Sbjct: 105 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGL 155
Query: 201 SYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEIS-ANLIGNWTELESLQIQNNSF 259
+ L Q S ++S +++ T LESL I N+
Sbjct: 156 TSLQ----QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQ 210
Query: 260 MGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTXXXXX 319
+ +I P +G+LT L L L N + LT+L +LDL+ NQ+S P
Sbjct: 211 ISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGL 264
Query: 320 XXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNF 379
I P G + +L ++N NQL P IS L L +++ NN
Sbjct: 265 TKLTELKLGANQISNISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 321
Query: 380 SGSIP 384
S P
Sbjct: 322 SDISP 326
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 1 MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHL-G 59
+ L+ L L + +N ++ P LS L K+ L LG N + S S + LT L
Sbjct: 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-----SNISPLAGLTALTN 291
Query: 60 LYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS 119
L LNE LE S I +NLTYL L N +S + P T L +L + + K+S
Sbjct: 292 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFF-------YNNKVS 344
Query: 120 PNVSKLSNLIDL 131
+VS L+NL ++
Sbjct: 345 -DVSSLANLTNI 355
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 105/237 (44%), Gaps = 47/237 (19%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLAT-- 135
NLT L L N+++ + P + TNL +LE L+ N ++S LS L L+ +
Sbjct: 113 NLTGLTLFNNQITDIDPLKNLTNLNRLE---LSSNTIS-----DISALSGLTSLQQLSFG 164
Query: 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELG 195
N+ + P + +++ L+ +++ +N + S L +L NL+ L N ++ P LG
Sbjct: 165 NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LG 218
Query: 196 LCTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEISANLIGNWTELESLQIQ 255
+ TNL L+L NQ + + T L L +
Sbjct: 219 ILTNLDELSLNGNQLKDIGT---------------------------LASLTNLTDLDLA 251
Query: 256 NNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIP 312
NN + N+ P G LTKL L L N S P + LT+L NL+L+ NQL P
Sbjct: 252 NNQ-ISNLAPLSG-LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 304
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 13/133 (9%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK 137
NLT LDL+ N++S L P + L KL L L NQ +SP ++ L+ L +L L N+
Sbjct: 244 NLTDLDLANNQISNLAP---LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQ 298
Query: 138 FSGPIPGDIGSMSNLQLVELFNNSFTGQIP-SSLGQLKNLQHLDLRMNALNYTIPPELGL 196
P I ++ NL + L+ N+ + P SSL +L+ L + +++ ++ L
Sbjct: 299 LEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-----SLAN 351
Query: 197 CTNLSYLALAVNQ 209
TN+++L+ NQ
Sbjct: 352 LTNINWLSAGHNQ 364
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 124/291 (42%), Gaps = 32/291 (10%)
Query: 291 IEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXXXXXXXGTIPPEIGSMASLVAFDV 350
+E L +L ++ S NQL+ P I P + ++ +L +
Sbjct: 63 VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 118
Query: 351 NTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFS--PSLINVSFSNNSFSGEL 408
NQ+ P + L LN+ + +N S D S SL +SF N +
Sbjct: 119 FNNQITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLSFGNQVTDLK- 170
Query: 409 PHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDF 468
L + LE L ++ N + + L +NL + NQ + +IT G+ LD
Sbjct: 171 --PLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQIS-DIT-PLGILTNLDE 224
Query: 469 IRLSGNQF--VGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTG 526
+ L+GNQ +G ++ NL++L L N+IS P L LT+L L L +N+++
Sbjct: 225 LSLNGNQLKDIGTLA----SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 278
Query: 527 KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVP 577
P L L L NL L+ N L P ISNL L YL L N ++ P
Sbjct: 279 ISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 325
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 46/235 (19%)
Query: 441 NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI 500
NL ++ F NQ T +IT + +D L N + +I+P NL+ L L N+I
Sbjct: 68 NLTQINFSNNQLT-DITPLKNLTKLVDI--LMNNNQIADITP-LANLTNLTGLTLFNNQI 123
Query: 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLN-LS-NNHLTGEIPKSISN 558
+ P L NLT L L L SN ++ D+ L L +L LS N +T P ++N
Sbjct: 124 TDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLTSLQQLSFGNQVTDLKP--LAN 174
Query: 559 LTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLDLSS 618
LT L LD+S+NK++ D+ S L L L+ ++ ++
Sbjct: 175 LTTLERLDISSNKVS-DI-------------------------SVLAKLTNLESLI-ATN 207
Query: 619 NSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELA 673
N +S P LG LT+L+ L+L+ NQL + +L+S+ +L +D ++N+++ LA
Sbjct: 208 NQISDITP--LGILTNLDELSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLA 258
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 131/305 (42%), Gaps = 29/305 (9%)
Query: 86 LNKLSGLIPERL-FTNLGKLEYLN-LTENQFQGKLSPNVSKLSNL---IDLRLATNKFSG 140
L++++ L +RL ++ +EYLN LT+ F +++ L NL +D+ + N+ +
Sbjct: 44 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 103
Query: 141 PIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNL 200
P + +++NL + LFNN T P L L NL L+L N ++ ++ + L
Sbjct: 104 ITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGL 154
Query: 201 SYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEIS-ANLIGNWTELESLQIQNNSF 259
+ L Q S ++S +++ T LESL I N+
Sbjct: 155 TSLQ----QLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL-IATNNQ 209
Query: 260 MGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTXXXXX 319
+ +I P +G+LT L L L N + LT+L +LDL+ NQ+S P
Sbjct: 210 ISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---LSGL 263
Query: 320 XXXXXXXXXXXXXGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNF 379
I P G + +L ++N NQL P IS L L +++ NN
Sbjct: 264 TKLTELKLGANQISNISPLAG-LTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNI 320
Query: 380 SGSIP 384
S P
Sbjct: 321 SDISP 325
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 65/132 (49%), Gaps = 16/132 (12%)
Query: 1 MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHL-G 59
+ L+ L L + +N ++ P LS L K+ L LG N + S S + LT L
Sbjct: 238 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI-----SNISPLAGLTALTN 290
Query: 60 LYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS 119
L LNE LE S I +NLTYL L N +S + P T L +L + N K+S
Sbjct: 291 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFAN-------NKVS 343
Query: 120 PNVSKLSNLIDL 131
+VS L+NL ++
Sbjct: 344 -DVSSLANLTNI 354
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 105/237 (44%), Gaps = 47/237 (19%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLAT-- 135
NLT L L N+++ + P + TNL +LE L+ N ++S LS L L+ +
Sbjct: 112 NLTGLTLFNNQITDIDPLKNLTNLNRLE---LSSNTIS-----DISALSGLTSLQQLSFG 163
Query: 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELG 195
N+ + P + +++ L+ +++ +N + S L +L NL+ L N ++ P LG
Sbjct: 164 NQVTDLKP--LANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LG 217
Query: 196 LCTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEISANLIGNWTELESLQIQ 255
+ TNL L+L NQ + + T L L +
Sbjct: 218 ILTNLDELSLNGNQLKDIGT---------------------------LASLTNLTDLDLA 250
Query: 256 NNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIP 312
NN + N+ P G LTKL L L N S P + LT+L NL+L+ NQL P
Sbjct: 251 NNQ-ISNLAPLSG-LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP 303
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 11/132 (8%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK 137
NLT LDL+ N++S L P + L KL L L NQ +SP ++ L+ L +L L N+
Sbjct: 243 NLTDLDLANNQISNLAP---LSGLTKLTELKLGANQI-SNISP-LAGLTALTNLELNENQ 297
Query: 138 FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC 197
P I ++ NL + L+ N+ + P S L LQ L N ++ L
Sbjct: 298 LEDISP--ISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSDV--SSLANL 351
Query: 198 TNLSYLALAVNQ 209
TN+++L+ NQ
Sbjct: 352 TNINWLSAGHNQ 363
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 85/173 (49%), Gaps = 15/173 (8%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
L+ L L + DN + P L +L K+ L+L GN L+ + S + + S+ L L
Sbjct: 68 LNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTST 123
Query: 64 ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVS 123
++T P L+ + YLDL N+++ + P TN L+YL++ NQ L+P ++
Sbjct: 124 QITDVTPLAGLSNLQVLYLDL--NQITNISPLAGLTN---LQYLSIGNNQV-NDLTP-LA 176
Query: 124 KLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNL 176
LS L LR NK S P + S+ NL V L +N + P L L NL
Sbjct: 177 NLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP--LANLSNL 225
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 1 MGDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
+ L+ LQYLS+ +N +N P L++L K+ L N + D S +S+P+L + L
Sbjct: 153 LAGLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKIS--DISPLASLPNLIEVHL 208
Query: 61 YLNELT 66
N+++
Sbjct: 209 KDNQIS 214
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 1/153 (0%)
Query: 30 KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKL 89
+ R LDLG N ++T + +F+S P L L L N ++ P NL L L N+L
Sbjct: 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92
Query: 90 SGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSM 149
LIP +FT L L L+++EN+ L L NL L + N +
Sbjct: 93 K-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
Query: 150 SNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
++L+ + L + T +L L L L LR
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Query: 47 SKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY 106
S FS L L L NE+ + +L L+LS N L G I R+F NL KLE
Sbjct: 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEV 351
Query: 107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI 166
L+L+ N + + L NL +L L TN+ G +++LQ + L N +
Sbjct: 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 411
Query: 167 P 167
P
Sbjct: 412 P 412
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN--VSKLSNLIDLRLAT 135
++ Y+DLSLN ++ L E F+ L L++L + E Q G + N LS+LI L+L
Sbjct: 31 HVNYVDLSLNSIAEL-NETSFSRLQDLQFLKV-EQQTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSS--LGQLKNLQHLDLRMNALNYTIPPE 193
N+F G ++NL+++ L + G + S L +L+ L LR N + P
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 194 LGL 196
L
Sbjct: 149 FFL 151
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 37/87 (42%)
Query: 486 ECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSN 545
E + L +++I + + + T L L+L NE+ L L LNLS
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332
Query: 546 NHLTGEIPKSISNLTELAYLDLSNNKL 572
N L + NL +L LDLS N +
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHI 359
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 23/101 (22%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
L+ L+ L++ NL+GA+ L GNF F + SL L L N
Sbjct: 102 LANLEVLTLTQCNLDGAV--------------LSGNF--------FKPLTSLEMLVLRDN 139
Query: 64 ELT-LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGK 103
+ ++ SF L R LDL+ NK+ + E L GK
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 459 AFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLS 518
+F L ++ LS + W +LSNL L N I P LT L L
Sbjct: 51 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Query: 519 LDSNELTGKIPTDLGKLVKLFNLNLSNNHL-TGEIPKSISNLTELAYLDLSNNKL 572
+L +G+L+ L LN+++N + + ++P SNLT L ++DLS N +
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 78/196 (39%), Gaps = 30/196 (15%)
Query: 19 GAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSM--PSLTHLGLYLN------------- 63
G+I F+ +L + YLDL N L +S + SL HL L N
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLE 399
Query: 64 ------------ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE 111
+ EF +F L+ L YLD+S + + + +F L L L +
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAF-LSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAG 457
Query: 112 NQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL 170
N F+ NV + +NL L L+ + G ++ LQL+ + +N+ S
Sbjct: 458 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 517
Query: 171 GQLKNLQHLDLRMNAL 186
QL +L LD N +
Sbjct: 518 NQLYSLSTLDCSFNRI 533
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP 141
+DLS N L ++ F+N +L++L+L+ + + L +L +L L N
Sbjct: 37 IDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 95
Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN-YTIPPELGLCTNL 200
PG +++L+ + +GQL L+ L++ N ++ +P TNL
Sbjct: 96 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155
Query: 201 SYLALAVN 208
++ L+ N
Sbjct: 156 VHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 53/115 (46%), Gaps = 1/115 (0%)
Query: 459 AFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLS 518
+F L ++ LS + W +LSNL L N I P LT L L
Sbjct: 46 SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 105
Query: 519 LDSNELTGKIPTDLGKLVKLFNLNLSNNHL-TGEIPKSISNLTELAYLDLSNNKL 572
+L +G+L+ L LN+++N + + ++P SNLT L ++DLS N +
Sbjct: 106 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 160
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 78/196 (39%), Gaps = 30/196 (15%)
Query: 19 GAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSM--PSLTHLGLYLN------------- 63
G+I F+ +L + YLDL N L +S + SL HL L N
Sbjct: 335 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLE 394
Query: 64 ------------ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE 111
+ EF +F L+ L YLD+S + + + +F L L L +
Sbjct: 395 ELQHLDFQHSTLKRVTEFSAF-LSLEKLLYLDISYTN-TKIDFDGIFLGLTSLNTLKMAG 452
Query: 112 NQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL 170
N F+ NV + +NL L L+ + G ++ LQL+ + +N+ S
Sbjct: 453 NSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHY 512
Query: 171 GQLKNLQHLDLRMNAL 186
QL +L LD N +
Sbjct: 513 NQLYSLSTLDCSFNRI 528
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 58/128 (45%), Gaps = 2/128 (1%)
Query: 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP 141
+DLS N L ++ F+N +L++L+L+ + + L +L +L L N
Sbjct: 32 IDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF 90
Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN-YTIPPELGLCTNL 200
PG +++L+ + +GQL L+ L++ N ++ +P TNL
Sbjct: 91 SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 150
Query: 201 SYLALAVN 208
++ L+ N
Sbjct: 151 VHVDLSYN 158
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 88/202 (43%), Gaps = 24/202 (11%)
Query: 19 GAIP-FQLSSLRKVRYL-DLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTC 76
G P +L SL+++ + + GGN D +PSL L L N L SF C
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVD------LPSLEFLDLSRNGL-----SFKGCC 365
Query: 77 R-------NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVS-KLSNL 128
+L YLDLS N + + F L +LE+L+ + + +V L NL
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 129 IDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ-IPSSLGQLKNLQHLDLRMNALN 187
I L ++ G +S+L+++++ NSF +P +L+NL LDL L
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 188 YTIPPELGLCTNLSYLALAVNQ 209
P ++L L +A NQ
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQ 505
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 87/195 (44%), Gaps = 34/195 (17%)
Query: 3 DLSELQYLSVYDNNLN--GAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
DL L++L + N L+ G ++YLDL N + T S F + L HL
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDF 403
Query: 61 YLNELTL--EFPSFILTCRNLTYLDLS-----------LNKLSGL--------------I 93
+ L EF F L+ RNL YLD+S N LS L +
Sbjct: 404 QHSNLKQMSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 94 PERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGDIGSMSNL 152
P+ +FT L L +L+L++ Q + +LSP + LS+L L +A+N+ G +++L
Sbjct: 463 PD-IFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520
Query: 153 QLVELFNNSFTGQIP 167
Q + L N + P
Sbjct: 521 QKIWLHTNPWDCSCP 535
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 466 LDFIRLSGNQFVGEISPD-WGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNEL 524
L+ ++++GN F PD + E RNL+ L L + ++ P +L+ L VL++ SN+L
Sbjct: 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Query: 525 TGKIPTDLGKLVKLFNLNLSNNHLTGEIPK 554
+L L + L N P+
Sbjct: 507 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 532 LGKLVKLFNLNLSNNHLTG-EIPKSISNLTELAYLDLSNNKL 572
+G L L LN+++N + ++P+ SNLT L +LDLS+NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 71/180 (39%), Gaps = 24/180 (13%)
Query: 31 VRYLDLGGNFLETPDWSKFS------SMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDL 84
+ Y + NF + PD FS S L HLG Y F SF L LDL
Sbjct: 10 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY------SFFSF----PELQVLDL 59
Query: 85 SLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPG 144
S ++ I + + +L L L LT N Q S LS+L L +
Sbjct: 60 SRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 145 DIGSMSNLQLVELFNNSFTG-QIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYL 203
IG + L+ + + +N ++P L NL+HLDL N + CT+L L
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY------CTDLRVL 172
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 247 TELESLQIQNNSFMGNIPPEIGL-LTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGN 305
+ LE L++ NSF N P+I L L +L L + P+ L+SL+ L+++ N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504
Query: 306 QLSGT 310
QL
Sbjct: 505 QLKSV 509
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 28/122 (22%)
Query: 528 IPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXX 587
I ++ K L L L+ N LT E+P I NL+ L LDLS+N+LT
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS------------- 284
Query: 588 XXXXXXXXXXGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSG 647
+P+ LG+ F L+Y +++ T+P E G L +L+ L + N L
Sbjct: 285 ------------LPAELGSCFQLKYFYFF--DNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330
Query: 648 RI 649
+
Sbjct: 331 QF 332
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 605 GNLFVLQYM--LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSV 662
N+F ++ L L+ NSL+ +P E+ L++L +L+LS N+L+ +PA L S L+
Sbjct: 241 ANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYF 298
Query: 663 DFSDNELTEL 672
F DN +T L
Sbjct: 299 YFFDNMVTTL 308
Score = 37.7 bits (86), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 490 LSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLT 549
L+ L L+ N ++ +PAE+ NL+ L VL L N LT +P +LG +L +N +T
Sbjct: 249 LTRLYLNGNSLTE-LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Query: 550 GEIPKSISNLTELAYLDLSNNKL 572
+P NL L +L + N L
Sbjct: 307 T-LPWEFGNLCNLQFLGVEGNPL 328
Score = 32.3 bits (72), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLS 201
I +I L + L NS T ++P+ + L NL+ LDL N L ++P ELG C L
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLK 296
Query: 202 YL 203
Y
Sbjct: 297 YF 298
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 40.4 bits (93), Expect = 0.004, Method: Composition-based stats.
Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 493 LQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDL-GKLVKLFNLNLSNNHLTGE 551
L L+ N+I+ P +L L L +SN+LT IPT + KL +L L+L++NHL
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNHLK-S 95
Query: 552 IPK-SISNLTELAYLDLSNN 570
IP+ + NL L ++ L NN
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
Score = 33.9 bits (76), Expect = 0.38, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
L LQ L N L L ++ LDL N L++ F ++ SLTH+ LY N
Sbjct: 56 LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Query: 64 ELTLEFPSFILTCRNLTYL 82
E CR++ YL
Sbjct: 116 PWDCE-------CRDIMYL 127
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 13/97 (13%)
Query: 489 NLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHL 548
N N++L + GIP + L L++N++T P LV L L ++N L
Sbjct: 18 NCQNIRL--ASVPAGIPTDKQRLW------LNNNQITKLEPGVFDHLVNLQQLYFNSNKL 69
Query: 549 TGEIPKSI-SNLTELAYLDLSNNKLTGDVPQELGRFD 584
T IP + LT+L LDL++N L +P+ G FD
Sbjct: 70 TA-IPTGVFDKLTQLTQLDLNDNHLK-SIPR--GAFD 102
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQ 306
T+ + L + NN P L LQ L+ N + +KLT L LDL+ N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92
Query: 307 LSGTIP 312
L +IP
Sbjct: 93 LK-SIP 97
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK 137
LT L LS N++ L P+ +F L KL L L EN+ Q + KL+ L +L L TN+
Sbjct: 53 QLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ 111
Query: 138 FSGPIPGDIGSMSNLQLVELFNNSFTGQIP 167
G +++LQ + L N + P
Sbjct: 112 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 8/130 (6%)
Query: 80 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFS 139
T L+L NKL L P +F L +L L+L++NQ Q KL+ L L L NK
Sbjct: 31 TRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89
Query: 140 GPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTN 199
G ++ L+ + L N +L +LQ + L N + + P
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP-------R 142
Query: 200 LSYLALAVNQ 209
+ YL+ +N+
Sbjct: 143 IDYLSRWLNK 152
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
L+ LQYL + DNNL L + +L L GN + + F + SL L L+ N
Sbjct: 127 LAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQN 186
Query: 64 ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQF 114
+ P L L L N LS ++P + L L+YL L +N +
Sbjct: 187 HVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLRSLQYLRLNDNPW 236
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Query: 75 TCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSK-LSNLIDLRL 133
+CRNLT L L N L+G I FT L LE L+L++N + P + L +L L L
Sbjct: 53 SCRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHL 111
Query: 134 ATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 186
PG ++ LQ + L +N+ ++ L NL HL L N +
Sbjct: 112 DRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRI 164
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 81/203 (39%), Gaps = 17/203 (8%)
Query: 469 IRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSL-DSNELTGK 527
I L GN+ + + CRNL+ L L N ++G A LT L L L D+ +L
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 528 IPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTG---DVPQELGRFD 584
PT L L L+L L P L L YL L +N L + ++LG
Sbjct: 96 DPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLT 155
Query: 585 KXXXXXXXXXXXXGEIPSNLGNLFVLQYMLD---LSSNSLSGTIPQELGKLTSLEILNLS 641
IPS + F + LD L N ++ P L L L L
Sbjct: 156 H-------LFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLF 208
Query: 642 RNQLSGRIPASLSSMISLRSVDF 664
N LS +PA + ++ LRS+ +
Sbjct: 209 ANNLS-MLPAEV--LVPLRSLQY 228
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 69/179 (38%), Gaps = 2/179 (1%)
Query: 7 LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNF-LETPDWSKFSSMPSLTHLGLYLNEL 65
L L ++ N L G + L + LDL N L D + F + L L L L
Sbjct: 57 LTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGL 116
Query: 66 TLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKL 125
P L YL L N L L P+ F +LG L +L L N+ L
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNNLQAL-PDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGL 175
Query: 126 SNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 184
+L L L N + P + L + LF N+ + L L++LQ+L L N
Sbjct: 176 HSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDN 234
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 66/173 (38%), Gaps = 12/173 (6%)
Query: 419 EELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVG 478
+ + ++GN + A ++C NL + N G AF L+ + LS N +
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 479 EISP-DWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIP----TDLG 533
+ P + +L L LDR + P L L L L N L +P DLG
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLG 152
Query: 534 KLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVP---QELGRF 583
L LF L N + + L L L L N + P ++LGR
Sbjct: 153 NLTHLF---LHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRL 202
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 137/302 (45%), Gaps = 34/302 (11%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHL-GLYL 62
L+ L+YL++ N + P LS+L K+ L +G N + + S++ +LT+L LYL
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI-----TDISALQNLTNLRELYL 117
Query: 63 NELTLEFPSFILTCRNLTYLDLSLNK-LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN 121
NE + S + L+L N LS L P +N L YL +TE++ + ++P
Sbjct: 118 NEDNISDISPLANLTKXYSLNLGANHNLSDLSP---LSNXTGLNYLTVTESKVK-DVTP- 172
Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDL 181
++ L++L L L N+ P + S+++L + N T P + L L +
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKI 228
Query: 182 RMNALNYTIPPELGLCTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEIS-A 240
N + P L + L++L + NQ S +IS
Sbjct: 229 GNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVG------SNQISDI 280
Query: 241 NLIGNWTELESLQIQNNSFMGNIPPE-IGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLEN 299
+++ N ++L SL + NN +GN E IG LT L LFL +N+ ++I L SL
Sbjct: 281 SVLNNLSQLNSLFLNNNQ-LGNEDXEVIGGLTNLTTLFLSQNHI-----TDIRPLASLSK 334
Query: 300 LD 301
D
Sbjct: 335 XD 336
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 71/291 (24%), Positives = 118/291 (40%), Gaps = 58/291 (19%)
Query: 418 LEELTVNGNNFTGSLP--------------------ACLRNCSNLNRVRFDGNQFT---- 453
LE L +NGN T P + L+N +NL + + + +
Sbjct: 68 LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP 127
Query: 454 -GNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLT 512
N+TK + ++ L N + ++SP L+ L + +++ P + NLT
Sbjct: 128 LANLTKXYSLN-------LGANHNLSDLSP-LSNXTGLNYLTVTESKVKDVTP--IANLT 177
Query: 513 RLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKL 572
L LSL+ N++ P L L L N +T P ++N T L L + NNK+
Sbjct: 178 DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKI 233
Query: 573 TGDVP---------QELG--RFDKXXXXXXXXXXXXGEIPSN-LGNLFVLQYMLDLSS-- 618
T P E+G + + SN + ++ VL + L+S
Sbjct: 234 TDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISVLNNLSQLNSLF 293
Query: 619 ---NSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSD 666
N L + +G LT+L L LS+N ++ P L+S+ S DF++
Sbjct: 294 LNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP--LASLSKXDSADFAN 342
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)
Query: 412 LCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRL 471
L S +L T N T P N + LN ++ N+ T +L ++ +
Sbjct: 195 LASLTSLHYFTAYVNQITDITPVA--NXTRLNSLKIGNNKITD--LSPLANLSQLTWLEI 250
Query: 472 SGNQFVGEISPDWGECRNLSNLQ---LDRNRISGGIPAELGNLTRLGVLSLDSNELTGKI 528
NQ D ++L+ L+ + N+IS + L NL++L L L++N+L +
Sbjct: 251 GTNQI-----SDINAVKDLTKLKXLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303
Query: 529 PTDLGKLVKLFNLNLSNNHLTGEIP 553
+G L L L LS NH+T P
Sbjct: 304 XEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 13/164 (7%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
L+ L L + DN + P L +L K+ L+L GN L+ + S + + S+ L L
Sbjct: 62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTST 117
Query: 64 ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVS 123
++T P L+ + YLDL N+++ + P TN L+YL++ Q L+P ++
Sbjct: 118 QITDVTPLAGLSNLQVLYLDL--NQITNISPLAGLTN---LQYLSIGNAQV-SDLTP-LA 170
Query: 124 KLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIP 167
LS L L+ NK S P + S+ NL V L NN + P
Sbjct: 171 NLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 31/225 (13%)
Query: 5 SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
S +YL++ +NN+ L + L LG N + + F+ + SL L L+ N
Sbjct: 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 65 LTL-----------------------EFPSFILTCRNLTYLDLSLNKLSGL--IPERLFT 99
LT+ PS+ R + + L L +L L I E F
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFN-RVPSLMRLDLGELKKLEYISEGAFE 193
Query: 100 NLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFN 159
L L+YLNL + PN++ L L +L ++ N F PG +S+L+ + + N
Sbjct: 194 GLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251
Query: 160 NSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLA 204
+ + ++ L +L L+L N L+ ++P +L T L YL
Sbjct: 252 SQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLF--TPLRYLV 293
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 50 SSMPSLTH-LGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN 108
+ +P+ T L LY+N++T P + LTYL+L++N+L+ L P +F L KL +L
Sbjct: 36 AGIPTTTQVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTAL-PVGVFDKLTKLTHLA 94
Query: 109 LTENQFQ 115
L NQ +
Sbjct: 95 LHINQLK 101
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP 141
L L +N+++ L P +F +L +L YLNL NQ KL+ L L L N+
Sbjct: 45 LHLYINQITKLEP-GVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSI 103
Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKN--LQHLDL 181
G ++ +L + LFNN + + S + LKN +QH +
Sbjct: 104 PMGVFDNLKSLTHIYLFNNPWDCEC-SDILYLKNWIVQHASI 144
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNEL 65
Q L +Y N + P SL ++ YL+L N L F + LTHL L++N+L
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL 100
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 49 FSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN 108
F S+ LT+L L +N+LT LT+L L +N+L IP +F NL L ++
Sbjct: 60 FDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS-IPMGVFDNLKSLTHIY 118
Query: 109 LTENQFQGKLS 119
L N + + S
Sbjct: 119 LFNNPWDCECS 129
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 493 LQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEI 552
L L N+I+ P +LT+L L+L N+LT KL KL +L L N L I
Sbjct: 45 LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQL-KSI 103
Query: 553 PKSI-SNLTELAYLDLSNN 570
P + NL L ++ L NN
Sbjct: 104 PMGVFDNLKSLTHIYLFNN 122
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 42/88 (47%), Gaps = 5/88 (5%)
Query: 497 RNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSI 556
+ R +PA + T+ VL L N++T P L +L LNL+ N LT
Sbjct: 27 QERSLASVPAGIPTTTQ--VLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVF 84
Query: 557 SNLTELAYLDLSNNKLTGDVPQELGRFD 584
LT+L +L L N+L +P +G FD
Sbjct: 85 DKLTKLTHLALHINQL-KSIP--MGVFD 109
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 53/191 (27%), Positives = 80/191 (41%), Gaps = 27/191 (14%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
L L L ++DN L L K+R L L N +E+ F+ +PSL L L
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD--LG 139
Query: 64 ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVS 123
EL + L Y I E F L L YLNL K PN++
Sbjct: 140 EL-----------KRLEY-----------ISEAAFEGLVNLRYLNL--GMCNLKDIPNLT 175
Query: 124 KLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRM 183
L L +L L+ N+ PG +++L+ + L + ++ LK+L+ L+L
Sbjct: 176 ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSH 235
Query: 184 NALNYTIPPEL 194
N L ++P +L
Sbjct: 236 NNL-MSLPHDL 245
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 105 EYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG 164
YLNL EN Q + L +L L+L+ N G + +L +ELF+N T
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 165 QIPSSLGQLKNLQHLDLRMNALNYTIP 191
+ L L+ L LR N + +IP
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIP 123
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 27/191 (14%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
L L L ++DN L L K+R L L N +E+ F+ +PSL L L
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD--LG 139
Query: 64 ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVS 123
EL + L Y I E F L L YLNL + PN++
Sbjct: 140 EL-----------KRLEY-----------ISEAAFEGLVNLRYLNLGMCNLKD--IPNLT 175
Query: 124 KLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRM 183
L L +L L+ N+ PG +++L+ + L + ++ LK+L+ L+L
Sbjct: 176 ALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSH 235
Query: 184 NALNYTIPPEL 194
N L ++P +L
Sbjct: 236 NNL-MSLPHDL 245
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 105 EYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG 164
YLNL EN Q + L +L L+L+ N G + +L +ELF+N T
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 165 QIPSSLGQLKNLQHLDLRMNALNYTIP 191
+ L L+ L LR N + +IP
Sbjct: 98 VPTQAFEYLSKLRELWLRNNPIE-SIP 123
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 49 FSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN 108
F +P L L L N+LT P+ ++ L L NK+ I ++F L +L+ LN
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTLN 108
Query: 109 LTENQFQGKLSPNVSKLSNLIDLRLATNKF 138
L +NQ + + L++L L LA+N F
Sbjct: 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPF 138
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 2/109 (1%)
Query: 80 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKF 138
T L L+ N+L + + LF L L L L NQ G + PN S++ +L+L NK
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEPNAFEGASHIQELQLGENKI 90
Query: 139 SGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN 187
+ L+ + L++N + +P S L +L L+L N N
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 517 LSLDSNELTGKIPTD--LGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKL 572
L L+ NEL G+I +D G+L L L L N LTG P + + + L L NK+
Sbjct: 34 LLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 14/135 (10%)
Query: 413 CSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLS 472
C+G L+E+ + T L L N + L R+ DG FG P L + L
Sbjct: 15 CTGRGLKEIPRDIPLHTTEL---LLNDNELGRISSDG---------LFGRLPHLVKLELK 62
Query: 473 GNQFVGEISPDWGE-CRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTD 531
NQ G I P+ E ++ LQL N+I L +L L+L N+++ +P
Sbjct: 63 RNQLTG-IEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS 121
Query: 532 LGKLVKLFNLNLSNN 546
L L +LNL++N
Sbjct: 122 FEHLNSLTSLNLASN 136
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK 137
+L L+L N+L+G+ P F ++ L L EN+ + + L L L L N+
Sbjct: 55 HLVKLELKRNQLTGIEP-NAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113
Query: 138 FSGPIPGDIGSMSNLQLVELFNNSF 162
S +PG +++L + L +N F
Sbjct: 114 ISCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 38.5 bits (88), Expect = 0.016, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 4/130 (3%)
Query: 8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTL 67
Q L ++DN + P SL ++ L LG N L F S+ LT L L N+LT+
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 68 EFPSFILT-CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLS 126
PS + +L L + NKL+ L R L L +L L +NQ + +LS
Sbjct: 103 -LPSAVFDRLVHLKELFMCCNKLTEL--PRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159
Query: 127 NLIDLRLATN 136
+L L N
Sbjct: 160 SLTHAYLFGN 169
Score = 37.7 bits (86), Expect = 0.026, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 65/150 (43%), Gaps = 30/150 (20%)
Query: 497 RNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSI 556
R++ +PA G T +L L N++T P L+ L L L +N L G +P +
Sbjct: 27 RSKRHASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGV 83
Query: 557 -SNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYMLD 615
+LT+L LDL N+LT +PS + + V L
Sbjct: 84 FDSLTQLTVLDLGTNQLT-------------------------VLPSAVFDRLVHLKELF 118
Query: 616 LSSNSLSGTIPQELGKLTSLEILNLSRNQL 645
+ N L+ +P+ + +LT L L L +NQL
Sbjct: 119 MCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
Score = 37.0 bits (84), Expect = 0.042, Method: Composition-based stats.
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 4 LSELQYLSVYDNNLNGAIPFQL-SSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
L L+ L + N L GA+P + SL ++ LDLG N L + F + L L +
Sbjct: 63 LINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121
Query: 63 NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTEN 112
N+LT E P I +LT+L L N+L IP F L L + L N
Sbjct: 122 NKLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGN 169
Score = 35.8 bits (81), Expect = 0.086, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 57/121 (47%), Gaps = 2/121 (1%)
Query: 58 LGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGK 117
L L+ N++T P + NL L L N+L G +P +F +L +L L+L NQ
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVL 103
Query: 118 LSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQ 177
S +L +L +L + NK + +P I +++L + L N + +L +L
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162
Query: 178 H 178
H
Sbjct: 163 H 163
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 52/122 (42%), Gaps = 30/122 (24%)
Query: 489 NLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPT------------DLG--- 533
N L L N+I+ P +L L L L SN+L G +P DLG
Sbjct: 41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQ 99
Query: 534 ----------KLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRF 583
+LV L L + N LT E+P+ I LT L +L L N+L +P G F
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPH--GAF 155
Query: 584 DK 585
D+
Sbjct: 156 DR 157
Score = 32.7 bits (73), Expect = 0.86, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 5/126 (3%)
Query: 268 GLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTXXXXXXXXXXXXX 327
G+ T Q L+L+ N + P + L +L+ L L NQL G +P
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDL 95
Query: 328 XXXXXGTIPPEI-GSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIP-G 385
+P + + L + N+L ELP I RL L ++ N SIP G
Sbjct: 96 GTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLK-SIPHG 153
Query: 386 DFGKFS 391
F + S
Sbjct: 154 AFDRLS 159
Score = 30.0 bits (66), Expect = 5.0, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 614 LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
L L SN L LT L +L+L NQL+ A ++ L+ + N+LTEL
Sbjct: 69 LYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTEL 127
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 51/176 (28%), Positives = 75/176 (42%), Gaps = 23/176 (13%)
Query: 25 LSSLRKVRYLDLGGNFLETPDWS--KFSSMPSLTHLGLYLNE-LTLEFPSFILTCRNLTY 81
L L ++ LDL + +E D + ++ L +L L NE L LE +F C L
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFK-ECPQLEL 403
Query: 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFS-G 140
LD++ L P F NL L LNL+ ++ L +L L L N F G
Sbjct: 404 LDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDG 463
Query: 141 PIPGD-----IGS-----MSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 186
I +GS +S+ L+ + +F G L+N+ HLDL N+L
Sbjct: 464 SISKTNLLQMVGSLEILILSSCNLLSIDQQAFHG--------LRNVNHLDLSHNSL 511
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 92/243 (37%), Gaps = 26/243 (10%)
Query: 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP 141
LDL+ L+GL P + + L+ L L N F N + +L DL + N
Sbjct: 282 LDLTAAHLNGL-PSGI-EGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNMRKL- 338
Query: 142 IPGDIGS-----MSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGL 196
D+G+ + NLQ ++L ++ +L QLKNL+HL LN + LGL
Sbjct: 339 ---DLGTRCLEKLENLQKLDLSHSDIEASDCCNL-QLKNLRHLQY----LNLSYNEPLGL 390
Query: 197 -------CTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEISANLIGNWTEL 249
C L L +A L + +L+ +L
Sbjct: 391 EDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDL 450
Query: 250 ESLQIQNNSFMGNIPPEIGLLT---KLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQ 306
L +Q NSF + LL L+ L L N L ++ +LDLS N
Sbjct: 451 RHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNS 510
Query: 307 LSG 309
L+G
Sbjct: 511 LTG 513
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 614 LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELA 673
LDLS N LS +L T LE+LNLS N L + L S+ +LR++D ++N + EL
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL 96
Query: 674 V 674
V
Sbjct: 97 V 97
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 26/182 (14%)
Query: 25 LSSLRKVRYLDLGGNFLE--------------TPDWSKFSSMPSLTHLGLYL--NELTLE 68
L SL +R LDL N+++ + S+ S +YL N++T+
Sbjct: 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM- 134
Query: 69 FPSFILTCRN-LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSN 127
CR+ + YLDL LN++ + L + LE+LNL N F + V +
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV-FAK 192
Query: 128 LIDLRLATNK--FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 185
L L L++NK F GP + S + + + L NN I +L +NL+H DLR N
Sbjct: 193 LKTLDLSSNKLAFMGP---EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248
Query: 186 LN 187
+
Sbjct: 249 FH 250
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELF--LKDVLDQRLPPPTGQLAEAVVLTI 736
++KCDVFS+G++ EV+ R P + G F + V + PP L + +
Sbjct: 181 SEKCDVFSWGIILWEVITRRKP---FDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIE--- 234
Query: 737 NVALACTSTTPDTRPSMRFVAQELSAKTQAYLP---EPL 772
++ C S P RPSM + + + Y P EPL
Sbjct: 235 SLMTRCWSKDPSQRPSMEEIVK-IMTHLMRYFPGADEPL 272
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 37.4 bits (85), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELF--LKDVLDQRLPPPTGQLAEAVVLTI 736
++KCDVFS+G++ EV+ R P + G F + V + PP L + +
Sbjct: 182 SEKCDVFSWGIILWEVITRRKP---FDEIGGPAFRIMWAVHNGTRPPLIKNLPKPIE--- 235
Query: 737 NVALACTSTTPDTRPSMRFVAQELSAKTQAYLP---EPL 772
++ C S P RPSM + + + Y P EPL
Sbjct: 236 SLMTRCWSKDPSQRPSMEEIVK-IMTHLMRYFPGADEPL 273
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 37.4 bits (85), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 26/182 (14%)
Query: 25 LSSLRKVRYLDLGGNFLET--------------PDWSKFSSMPSLTHLGLYL--NELTLE 68
L SL +R LDL N+++ + S+ S +YL N++T+
Sbjct: 76 LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM- 134
Query: 69 FPSFILTCRN-LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSN 127
CR+ + YLDL LN++ + L + LE+LNL N F + V +
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV-FAK 192
Query: 128 LIDLRLATNK--FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 185
L L L++NK F GP + S + + + L NN I +L +NL+H DLR N
Sbjct: 193 LKTLDLSSNKLAFMGP---EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNG 248
Query: 186 LN 187
+
Sbjct: 249 FH 250
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 614 LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTELA 673
LDLS N LS +L T LE+LNLS N L + L S+ +LR++D ++N + EL
Sbjct: 39 LDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--DLESLSTLRTLDLNNNYVQELL 96
Query: 674 V 674
V
Sbjct: 97 V 97
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 87/197 (44%), Gaps = 29/197 (14%)
Query: 504 IPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTE-L 562
+ L +LG L N+L GK+P G +KL +LNL+ N +T EIP + TE +
Sbjct: 322 VETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT-EIPANFCGFTEQV 379
Query: 563 AYLDLSNNKLTGDVPQELGRFD-KXXXXXXXXXXXXGEIPSNLGNLF----------VLQ 611
L ++NKL +P FD K EI S G F +
Sbjct: 380 ENLSFAHNKLKY-IP---NIFDAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV 435
Query: 612 YMLDLSSNSLSGTIPQELGKLTS-LEILNLSRNQLSGRIPA--------SLSSMISLRSV 662
++LS+N +S P+EL S L +NL N L+ IP + + L S+
Sbjct: 436 SSINLSNNQIS-KFPKELFSTGSPLSSINLXGNXLT-EIPKNSLKDENENFKNTYLLTSI 493
Query: 663 DFSDNELTELAVTMRVT 679
D N+LT+L+ R T
Sbjct: 494 DLRFNKLTKLSDDFRAT 510
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 87/201 (43%), Gaps = 24/201 (11%)
Query: 19 GAIP-FQLSSLRKVRYL-DLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTC 76
G P +L SL+++ + + GGN D +PSL L L N L SF C
Sbjct: 341 GQFPTLKLKSLKRLTFTSNKGGNAFSEVD------LPSLEFLDLSRNGL-----SFKGCC 389
Query: 77 R-------NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVS-KLSNL 128
+L YLDLS N + + F L +LE+L+ + + +V L NL
Sbjct: 390 SQSDFGTISLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447
Query: 129 IDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ-IPSSLGQLKNLQHLDLRMNALN 187
I L ++ G +S+L+++++ NSF +P +L+NL LDL L
Sbjct: 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 507
Query: 188 YTIPPELGLCTNLSYLALAVN 208
P ++L L ++ N
Sbjct: 508 QLSPTAFNSLSSLQVLNMSHN 528
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 91/207 (43%), Gaps = 38/207 (18%)
Query: 31 VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTL--EFPSFILTCRNLTYLDLS--- 85
++YLDL N + T S F + L HL + L EF F L+ RNL YLD+S
Sbjct: 399 LKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVF-LSLRNLIYLDISHTH 456
Query: 86 --------LNKLSGL--------------IPERLFTNLGKLEYLNLTENQFQGKLSPNV- 122
N LS L +P+ +FT L L +L+L++ Q + +LSP
Sbjct: 457 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLE-QLSPTAF 514
Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
+ LS+L L ++ N F +++LQ+++ N I +S Q LQH
Sbjct: 515 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN----HIMTSKKQ--ELQHFPSS 568
Query: 183 MNALNYTIPPELGLCTNLSYLALAVNQ 209
+ LN T C + S+L +Q
Sbjct: 569 LAFLNLTQNDFACTCEHQSFLQWIKDQ 595
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 532 LGKLVKLFNLNLSNNHLTG-EIPKSISNLTELAYLDLSNNKL 572
+G L L LN+++N + ++P+ SNLT L +LDLS+NK+
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 71/180 (39%), Gaps = 24/180 (13%)
Query: 31 VRYLDLGGNFLETPDWSKFS------SMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDL 84
+ Y + NF + PD FS S L HLG Y F SF L LDL
Sbjct: 34 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY------SFFSF----PELQVLDL 83
Query: 85 SLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPG 144
S ++ I + + +L L L LT N Q S LS+L L +
Sbjct: 84 SRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 142
Query: 145 DIGSMSNLQLVELFNNSFTG-QIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYL 203
IG + L+ + + +N ++P L NL+HLDL N + CT+L L
Sbjct: 143 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY------CTDLRVL 196
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 613 MLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNEL 669
LDLS L P L+SL++LN+S N + SL+ +D+S N +
Sbjct: 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.0 bits (84), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 15/197 (7%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNF---------LETPDWSKFSSMPS 54
L +L+Y + NN+ L L VRYL+L +F L D F +
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330
Query: 55 LTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGL--IPERLFTNLGK--LEYLNLT 110
L HL + N++ + NL YL LS N + L + F +L L LNLT
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLT 389
Query: 111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPG-DIGSMSNLQLVELFNNSFTGQIPSS 169
+N+ S S L +L L L N+ + G + + N+ + L N + +S
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449
Query: 170 LGQLKNLQHLDLRMNAL 186
+ +LQ L LR AL
Sbjct: 450 FALVPSLQRLMLRRVAL 466
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.0 bits (84), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 15/197 (7%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNF---------LETPDWSKFSSMPS 54
L +L+Y + NN+ L L VRYL+L +F L D F +
Sbjct: 276 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 335
Query: 55 LTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGL--IPERLFTNLGK--LEYLNLT 110
L HL + N++ + NL YL LS N + L + F +L L LNLT
Sbjct: 336 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLT 394
Query: 111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPG-DIGSMSNLQLVELFNNSFTGQIPSS 169
+N+ S S L +L L L N+ + G + + N+ + L N + +S
Sbjct: 395 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 454
Query: 170 LGQLKNLQHLDLRMNAL 186
+ +LQ L LR AL
Sbjct: 455 FALVPSLQRLMLRRVAL 471
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 82/197 (41%), Gaps = 15/197 (7%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNF---------LETPDWSKFSSMPS 54
L +L+Y + NN+ L L VRYL+L +F L D F +
Sbjct: 281 LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 340
Query: 55 LTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGL--IPERLFTNLGK--LEYLNLT 110
L HL + N++ + NL YL LS N + L + F +L L LNLT
Sbjct: 341 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLT 399
Query: 111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPG-DIGSMSNLQLVELFNNSFTGQIPSS 169
+N+ S S L +L L L N+ + G + + N+ + L N + +S
Sbjct: 400 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 459
Query: 170 LGQLKNLQHLDLRMNAL 186
+ +LQ L LR AL
Sbjct: 460 FALVPSLQRLMLRRVAL 476
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 87/201 (43%), Gaps = 24/201 (11%)
Query: 19 GAIP-FQLSSLRKVRYL-DLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTC 76
G P +L SL+++ + + GGN D +PSL L L N L SF C
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVD------LPSLEFLDLSRNGL-----SFKGCC 365
Query: 77 R-------NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVS-KLSNL 128
+L YLDLS N + + F L +LE+L+ + + +V L NL
Sbjct: 366 SQSDFGTTSLKYLDLSFNGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423
Query: 129 IDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ-IPSSLGQLKNLQHLDLRMNALN 187
I L ++ G +S+L+++++ NSF +P +L+NL LDL L
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 188 YTIPPELGLCTNLSYLALAVN 208
P ++L L ++ N
Sbjct: 484 QLSPTAFNSLSSLQVLNMSHN 504
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 102/237 (43%), Gaps = 40/237 (16%)
Query: 3 DLSELQYLSVYDNNLN--GAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL 60
DL L++L + N L+ G ++YLDL N + T S F + L HL
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS-SNFLGLEQLEHLDF 403
Query: 61 YLNELTL--EFPSFILTCRNLTYLDLS-----------LNKLSGL--------------I 93
+ L EF F L+ RNL YLD+S N LS L +
Sbjct: 404 QHSNLKQMSEFSVF-LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 94 PERLFTNLGKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGDIGSMSNL 152
P+ +FT L L +L+L++ Q + +LSP + LS+L L ++ N F +++L
Sbjct: 463 PD-IFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 520
Query: 153 QLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQ 209
Q+++ N I +S Q LQH + LN T C + S+L +Q
Sbjct: 521 QVLDYSLN----HIMTSKKQ--ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQ 571
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 532 LGKLVKLFNLNLSNNHLTG-EIPKSISNLTELAYLDLSNNKL 572
+G L L LN+++N + ++P+ SNLT L +LDLS+NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 66/163 (40%), Gaps = 18/163 (11%)
Query: 31 VRYLDLGGNFLETPDWSKFS------SMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDL 84
+ Y + NF + PD FS S L HLG Y F SF L LDL
Sbjct: 10 ITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY------SFFSF----PELQVLDL 59
Query: 85 SLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPG 144
S ++ I + + +L L L LT N Q S LS+L L +
Sbjct: 60 SRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 145 DIGSMSNLQLVELFNNSFTG-QIPSSLGQLKNLQHLDLRMNAL 186
IG + L+ + + +N ++P L NL+HLDL N +
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.3 bits (64), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 613 MLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNEL 669
LDLS L P L+SL++LN+S N + SL+ +D+S N +
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 82/200 (41%), Gaps = 61/200 (30%)
Query: 392 PSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQ 451
P+ I FS+++F+ + L + +T N N S+ + N S++ V+ G Q
Sbjct: 9 PTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIKSVQ--GIQ 63
Query: 452 FTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI----------- 500
+ N+TK F L+GN+ +I P +NL L LD N++
Sbjct: 64 YLPNVTKLF----------LNGNKLT-DIKP-LANLKNLGWLFLDENKVKDLSSLKDLKK 111
Query: 501 -------SGGIPA-------------ELGN-----------LTRLGVLSLDSNELTGKIP 529
GI LGN LT+L LSL+ N++ +P
Sbjct: 112 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVP 171
Query: 530 TDLGKLVKLFNLNLSNNHLT 549
L +L KL NL LS NH++
Sbjct: 172 --LARLTKLQNLYLSKNHIS 189
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 69/163 (42%), Gaps = 12/163 (7%)
Query: 5 SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64
S L L ++DN + S LR + +++GGN LE S GL LN
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLEN------SGFEPGAFDGLKLNY 176
Query: 65 LTLEFPSFILTCRN----LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSP 120
L + ++ L L L NK+ + E L KL L L NQ + +
Sbjct: 177 LRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLL-RYSKLYRLGLGHNQIRMIENG 235
Query: 121 NVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT 163
++S L L +L L NK S +P + + LQ+V L N+ T
Sbjct: 236 SLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT 277
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 90/239 (37%), Gaps = 37/239 (15%)
Query: 460 FGVHPRLDFIRLSG---NQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGV 516
FG H L ++ S EISPD + L L N IS + L L
Sbjct: 29 FGCHCHLRVVQCSDLGLKAVPKEISPD------TTLLDLQNNDISELRKDDFKGLQHLYA 82
Query: 517 LSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSI-SNLTELAYLDLSNNKLTGD 575
L L +N+++ L KL L +S NHL EIP ++ S+L EL D K+
Sbjct: 83 LVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKG 141
Query: 576 VPQ--------------------ELGRFD--KXXXXXXXXXXXXGEIPSNLGNLFVLQYM 613
V E G FD K G IP +L
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLPETL---NE 197
Query: 614 LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELTEL 672
L L N + ++L + + L L L NQ+ SLS + +LR + +N+L+ +
Sbjct: 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV 256
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
L+ LQYL + DN L L + +L L GN + + F + SL L L+ N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 64 ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQF 114
+ P L L L N LS L P L L+YL L +N +
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPW 237
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 61/152 (40%), Gaps = 2/152 (1%)
Query: 34 LDLGGNF-LETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGL 92
LDL N L + D + F + L L L L P L YL L N L L
Sbjct: 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144
Query: 93 IPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNL 152
P+ F +LG L +L L N+ L +L L L N+ + P + L
Sbjct: 145 -PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203
Query: 153 QLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 184
+ LF N+ + +L L+ LQ+L L N
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 76/201 (37%), Gaps = 4/201 (1%)
Query: 469 IRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSL-DSNELTGK 527
I L GN+ + + CRNL+ L L N ++ A L L L L D+ +L
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 528 IPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXX 587
P L +L L+L L P L L YL L +N L +P + R
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNL 155
Query: 588 XXXXXXXXXXGEIPSN-LGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLS 646
+P L L +L L N ++ P L L L L N LS
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLL-LHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 647 GRIPASLSSMISLRSVDFSDN 667
+L+ + +L+ + +DN
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 5/136 (3%)
Query: 489 NLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHL 548
NL++L L NRIS L L L L N + P L +L L L N+L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213
Query: 549 TGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLF 608
+ ++++ L L YL L++N D R E+P +L
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDC-----RARPLWAWLQKFRGSSSEVPCSLPQRL 268
Query: 609 VLQYMLDLSSNSLSGT 624
+ + L++N L G
Sbjct: 269 AGRDLKRLAANDLQGC 284
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 67/175 (38%), Gaps = 12/175 (6%)
Query: 417 ALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQF 476
A + + ++GN + A R C NL + N AF L+ + LS N
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 477 VGEISP-DWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIP----TD 531
+ + P + L L LDR + P L L L L N L +P D
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRD 151
Query: 532 LGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVP---QELGRF 583
LG L LF L N ++ ++ L L L L N++ P ++LGR
Sbjct: 152 LGNLTHLF---LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 46/111 (41%), Gaps = 1/111 (0%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
L+ LQYL + DN L L + +L L GN + + F + SL L L+ N
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 186
Query: 64 ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQF 114
+ P L L L N LS L P L L+YL L +N +
Sbjct: 187 RVAHVHPHAFRDLGRLMTLYLFANNLSAL-PTEALAPLRALQYLRLNDNPW 236
Score = 36.2 bits (82), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 61/152 (40%), Gaps = 2/152 (1%)
Query: 34 LDLGGNF-LETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGL 92
LDL N L + D + F + L L L L P L YL L N L L
Sbjct: 84 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 143
Query: 93 IPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNL 152
P+ F +LG L +L L N+ L +L L L N+ + P + L
Sbjct: 144 -PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 202
Query: 153 QLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 184
+ LF N+ + +L L+ LQ+L L N
Sbjct: 203 MTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 52/201 (25%), Positives = 76/201 (37%), Gaps = 4/201 (1%)
Query: 469 IRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSL-DSNELTGK 527
I L GN+ + + CRNL+ L L N ++ A L L L L D+ +L
Sbjct: 36 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 95
Query: 528 IPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXX 587
P L +L L+L L P L L YL L +N L +P + R
Sbjct: 96 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNL 154
Query: 588 XXXXXXXXXXGEIPSN-LGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLS 646
+P L L +L L N ++ P L L L L N LS
Sbjct: 155 THLFLHGNRISSVPERAFRGLHSLDRLL-LHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 213
Query: 647 GRIPASLSSMISLRSVDFSDN 667
+L+ + +L+ + +DN
Sbjct: 214 ALPTEALAPLRALQYLRLNDN 234
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 5/136 (3%)
Query: 489 NLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHL 548
NL++L L NRIS L L L L N + P L +L L L N+L
Sbjct: 153 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 212
Query: 549 TGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLF 608
+ ++++ L L YL L++N D R E+P +L
Sbjct: 213 SALPTEALAPLRALQYLRLNDNPWVCDC-----RARPLWAWLQKFRGSSSEVPCSLPQRL 267
Query: 609 VLQYMLDLSSNSLSGT 624
+ + L++N L G
Sbjct: 268 AGRDLKRLAANDLQGC 283
Score = 32.7 bits (73), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 67/175 (38%), Gaps = 12/175 (6%)
Query: 417 ALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQF 476
A + + ++GN + A R C NL + N AF L+ + LS N
Sbjct: 32 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 91
Query: 477 VGEISP-DWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIP----TD 531
+ + P + L L LDR + P L L L L N L +P D
Sbjct: 92 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRD 150
Query: 532 LGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVP---QELGRF 583
LG L LF L N ++ ++ L L L L N++ P ++LGR
Sbjct: 151 LGNLTHLF---LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 202
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 614 LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLS--GRIPASLSSMISLRSVDFSDNELT 670
LD S+N L+ T+ + G LT LE L L NQL +I + M SL+ +D S N ++
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 24/168 (14%)
Query: 233 FLSGEISANLI--------GNWTELESLQIQNNSF--MGNIPPEIGLLTKLQYLFLYRNN 282
FL + S NL+ G+ TELE+L +Q N + I + LQ L + +N+
Sbjct: 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS 385
Query: 283 FS-GPIPSEIEKLTSLENLDLSGNQLSGTI----PPTXXXXXXXXXXXXXXXXXXGTIPP 337
S + SL +L++S N L+ TI PP +IP
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP-------RIKVLDLHSNKIKSIPK 438
Query: 338 EIGSMASLVAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNFSGSIP 384
++ + +L +V +NQL +P+ I RL L K + TN + S P
Sbjct: 439 QVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 27 SLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCR---NLTYLD 83
SL K+R L + N ++ D S F L +L L N+L ++C NL +LD
Sbjct: 43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK------ISCHPTVNLKHLD 96
Query: 84 LSLNKLSGLIPERLFTNLGKLEYLNLTENQFQ 115
LS N L + F N+ +L++L L+ +
Sbjct: 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 97/235 (41%), Gaps = 29/235 (12%)
Query: 444 RVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGG 503
++ F ++G KA +H + + ++ EI SN+ + +SG
Sbjct: 262 QLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEI---------FSNMNIKNFTVSGT 312
Query: 504 IPAELGNLTRLG-VLSLD--SNELTGKIPTDLGKLVKLFNLNLSNNHLT--GEIPKSISN 558
+ +++ L LD +N LT + + G L +L L L N L +I + +
Sbjct: 313 RMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ 372
Query: 559 LTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIPSNLGNLFVLQYM----- 613
+ L LD+S N ++ D +K + SN+ + + +
Sbjct: 373 MKSLQQLDISQNSVSYD--------EKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIK 424
Query: 614 -LDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDN 667
LDL SN + +IP+++ KL +L+ LN++ NQL + SL+ + N
Sbjct: 425 VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 74/190 (38%), Gaps = 53/190 (27%)
Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT--GQIPSSLGQLKNLQHLD 180
SK+S + L + N + + + G ++ L+ + L N +I Q+K+LQ LD
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD 380
Query: 181 LRMNALNYTIPPELGLCTNLSYLALAVNQXXXXXXXXXXXXXXXXXXXXXXXFLSGEISA 240
+ N+++Y + G C+ LS +S+
Sbjct: 381 ISQNSVSY--DEKKGDCS------------------------------WTKSLLSLNMSS 408
Query: 241 NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENL 300
N++ ++ +PP I +L L+ N IP ++ KL +L+ L
Sbjct: 409 NIL------------TDTIFRCLPPRIKVLD------LHSNKIKS-IPKQVVKLEALQEL 449
Query: 301 DLSGNQLSGT 310
+++ NQL
Sbjct: 450 NVASNQLKSV 459
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 79/187 (42%), Gaps = 34/187 (18%)
Query: 4 LSELQYLSVYDNNL----NGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLG 59
L+ L L ++DN L NGA + L K++ L L N +E+ F+ +PSL L
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVY----LSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166
Query: 60 LYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS 119
L EL + L+Y I E F L L YLNL +
Sbjct: 167 L--GEL-----------KRLSY-----------ISEGAFEGLSNLRYLNLAMCNLREI-- 200
Query: 120 PNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHL 179
PN++ L L +L L+ N S PG + +LQ + + + ++ L++L +
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260
Query: 180 DLRMNAL 186
+L N L
Sbjct: 261 NLAHNNL 267
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
LS L+YL++ NL IP L+ L K+ LDL GN L F + L L + +
Sbjct: 184 LSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 64 ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQF 114
++ + + ++L ++L+ N L+ L+P LFT L LE ++L N +
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW 291
Score = 33.1 bits (74), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 73/187 (39%), Gaps = 6/187 (3%)
Query: 488 RNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNH 547
R+L LQL RN I L L L L N LT L KL L L NN
Sbjct: 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147
Query: 548 LTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXG--EIPSNLG 605
+ + + + L LDL K + + G F+ EIP NL
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISE--GAFEGLSNLRYLNLAMCNLREIP-NLT 204
Query: 606 NLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFS 665
L L LDLS N LS P L L+ L + ++Q+ + ++ SL ++ +
Sbjct: 205 PLIKLDE-LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263
Query: 666 DNELTEL 672
N LT L
Sbjct: 264 HNNLTLL 270
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 93 IPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNL 152
+P+ + TN LNL ENQ Q + L +L L+L+ N G ++NL
Sbjct: 58 VPDGISTNT---RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114
Query: 153 QLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 186
+ELF+N T + L L+ L LR N +
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.2 bits (82), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 79/184 (42%), Gaps = 16/184 (8%)
Query: 34 LDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCR-------NLTYLDLSL 86
L+L N L++ F + LT L L N L SF C +L YLDLS
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGL-----SFKGCCSQSDFGTTSLKYLDLSF 87
Query: 87 NKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVS-KLSNLIDLRLATNKFSGPIPGD 145
N + + F L +LE+L+ + + +V L NLI L ++ G
Sbjct: 88 NGVITMSSN--FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 145
Query: 146 IGSMSNLQLVELFNNSFTGQ-IPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLA 204
+S+L+++++ NSF +P +L+NL LDL L P ++L L
Sbjct: 146 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205
Query: 205 LAVN 208
++ N
Sbjct: 206 MSHN 209
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 91/207 (43%), Gaps = 38/207 (18%)
Query: 31 VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTL--EFPSFILTCRNLTYLDLS--- 85
++YLDL N + T S F + L HL + L EF F L+ RNL YLD+S
Sbjct: 80 LKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVF-LSLRNLIYLDISHTH 137
Query: 86 --------LNKLSGL--------------IPERLFTNLGKLEYLNLTENQFQGKLSPNV- 122
N LS L +P+ +FT L L +L+L++ Q + +LSP
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQLE-QLSPTAF 195
Query: 123 SKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182
+ LS+L L ++ N F +++LQ+++ N I +S Q LQH
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN----HIMTSKKQ--ELQHFPSS 249
Query: 183 MNALNYTIPPELGLCTNLSYLALAVNQ 209
+ LN T C + S+L +Q
Sbjct: 250 LAFLNLTQNDFACTCEHQSFLQWIKDQ 276
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 103/271 (38%), Gaps = 66/271 (24%)
Query: 334 TIPPEIGSMASLVAFDVNTNQLHGELPENI-SRLVKLNKFSVFTN--NFSGSIP-GDFGK 389
++P I S A+ + + N Q LP + +L +L K S+ +N +F G DFG
Sbjct: 21 SVPTGIPSSATRLELESNKLQ---SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77
Query: 390 FSPSLINVSF------SNNSFSGELPHELCSGFALEELTVNGNNFTG----SLPACLRNC 439
S +++SF S+N E LE L +N S+ LRN
Sbjct: 78 TSLKYLDLSFNGVITMSSNFLGLE---------QLEHLDFQHSNLKQMSEFSVFLSLRNL 128
Query: 440 SNLN------RVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPD-WGECRNLSN 492
L+ RV F+G F L+ ++++GN F PD + E RNL+
Sbjct: 129 IYLDISHTHTRVAFNG---------IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 179
Query: 493 LQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEI 552
L L + ++ P +L+ L VL N+S+N+
Sbjct: 180 LDLSQCQLEQLSPTAFNSLSSLQVL------------------------NMSHNNFFSLD 215
Query: 553 PKSISNLTELAYLDLSNNKLTGDVPQELGRF 583
L L LD S N + QEL F
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 35.8 bits (81), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 16/102 (15%)
Query: 675 TMRVTDKCDVFSFGVVALEVMMGRHPGEL--------------ITSLSGELFLKDVLDQR 720
T + ++K DVF +GV+ LE++ G+ +L + L E L+ ++D
Sbjct: 217 TGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVD 276
Query: 721 LPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQELSA 762
L E V I VAL CT ++P RP M V + L
Sbjct: 277 LQGNYKD--EEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 316
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 16/102 (15%)
Query: 675 TMRVTDKCDVFSFGVVALEVMMGRHPGEL--------------ITSLSGELFLKDVLDQR 720
T + ++K DVF +GV+ LE++ G+ +L + L E L+ ++D
Sbjct: 209 TGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVD 268
Query: 721 LPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQELSA 762
L E V I VAL CT ++P RP M V + L
Sbjct: 269 LQGNYKD--EEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 308
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 91/218 (41%), Gaps = 63/218 (28%)
Query: 392 PSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQ 451
P+ I FS+++F+ + L + +T N N S+ + N S++ V+ G Q
Sbjct: 9 PTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIKSVQ--GIQ 63
Query: 452 FTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI----------- 500
+ N+TK F L+GN+ +I P +NL L LD N++
Sbjct: 64 YLPNVTKLF----------LNGNKLT-DIKP-LANLKNLGWLFLDENKVKDLSSLKDLKK 111
Query: 501 -------SGGIPA-------------ELGN-----------LTRLGVLSLDSNELTGKIP 529
GI LGN LT+L LSL+ N+++ +P
Sbjct: 112 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 171
Query: 530 TDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDL 567
L L KL NL LS NH++ ++++ L L L+L
Sbjct: 172 --LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLEL 205
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL 302
T+L++L +++N +P + LTKLQ L+L +N+ S++ L L+NLD+
Sbjct: 154 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLDV 202
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 91/218 (41%), Gaps = 63/218 (28%)
Query: 392 PSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQ 451
P+ I FS+++F+ + L + +T N N S+ + N S++ V+ G Q
Sbjct: 11 PTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIKSVQ--GIQ 65
Query: 452 FTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI----------- 500
+ N+TK F L+GN+ +I P +NL L LD N++
Sbjct: 66 YLPNVTKLF----------LNGNKLT-DIKP-LANLKNLGWLFLDENKVKDLSSLKDLKK 113
Query: 501 -------SGGIPA-------------ELGN-----------LTRLGVLSLDSNELTGKIP 529
GI LGN LT+L LSL+ N+++ +P
Sbjct: 114 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 173
Query: 530 TDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDL 567
L L KL NL LS NH++ ++++ L L L+L
Sbjct: 174 --LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL 207
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL 302
T+L++L +++N +P + LTKLQ L+L +N+ S++ L L+NLD+
Sbjct: 156 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLDV 204
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 18/97 (18%)
Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELF--------------LKDV 716
E + R+T+K DV+SFGVV EV+ R ++ SL E+ L+ +
Sbjct: 211 EYFIKGRLTEKSDVYSFGVVLFEVLCAR--SAIVQSLPREMVNLAEWAVESHNNGQLEQI 268
Query: 717 LDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSM 753
+D L E++ + A+ C + + + RPSM
Sbjct: 269 VDPNLADKI--RPESLRKFGDTAVKCLALSSEDRPSM 303
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 18/97 (18%)
Query: 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELF--------------LKDV 716
E + R+T+K DV+SFGVV EV+ R ++ SL E+ L+ +
Sbjct: 211 EYFIKGRLTEKSDVYSFGVVLFEVLCAR--SAIVQSLPREMVNLAEWAVESHNNGQLEQI 268
Query: 717 LDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSM 753
+D L E++ + A+ C + + + RPSM
Sbjct: 269 VDPNLADKIR--PESLRKFGDTAVKCLALSSEDRPSM 303
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 82/200 (41%), Gaps = 61/200 (30%)
Query: 392 PSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQ 451
P+ I FS+++F+ + L + +T N N S+ + N S++ V+ G Q
Sbjct: 11 PTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIKSVQ--GIQ 65
Query: 452 FTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI----------- 500
+ N+TK F L+GN+ +I P +NL L LD N++
Sbjct: 66 YLPNVTKLF----------LNGNKLT-DIKP-LANLKNLGWLFLDENKVKDLSSLKDLKK 113
Query: 501 -------SGGIPA-------------ELGN-----------LTRLGVLSLDSNELTGKIP 529
GI LGN LT+L LSL+ N+++ +P
Sbjct: 114 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 173
Query: 530 TDLGKLVKLFNLNLSNNHLT 549
L L KL NL LS NH++
Sbjct: 174 --LAGLTKLQNLYLSKNHIS 191
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL 302
T+L++L +++N +P + LTKLQ L+L +N+ S++ L L+NLD+
Sbjct: 156 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLDV 204
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 493 LQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEI 552
L L NRI+ P LT+L L LD+N+LT KL +L L+L++N L I
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KSI 93
Query: 553 PK-SISNLTELAYLDLSNN 570
P+ + NL L ++ L NN
Sbjct: 94 PRGAFDNLRSLTHIWLLNN 112
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 260 MGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLS 308
+ ++P G+ T Q L+LY N + P ++LT L LDL NQL+
Sbjct: 21 LASVP--TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT 67
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 500 ISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNL 559
+ GIP T VL L N +T P +L +L L+L NN LT L
Sbjct: 24 VPTGIP------TTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77
Query: 560 TELAYLDLSNNKLTGDVPQELGRFD 584
T+L L L++N+L +P+ G FD
Sbjct: 78 TQLTQLSLNDNQLKS-IPR--GAFD 99
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 50 SSMPSLTH-LGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN 108
+ +P+ T L LY N +T P LT LDL N+L+ ++P +F L +L L+
Sbjct: 26 TGIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLS 84
Query: 109 LTENQFQ 115
L +NQ +
Sbjct: 85 LNDNQLK 91
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 12/161 (7%)
Query: 389 KFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFD 448
++ P+L +++ SNN + P + +L +NGN T P L N NL + D
Sbjct: 63 QYLPNLTSLNLSNNQITDISPIQYLPNVT--KLFLNGNKLTDIKP--LANLKNLGWLFLD 118
Query: 449 GNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAEL 508
N+ + + + +G + +I+ L +L L N+I+ L
Sbjct: 119 ENKVKDLSSLKDLKKLKSLSLEHNG---ISDIN-GLVHLPQLESLYLGNNKITD--ITVL 172
Query: 509 GNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLT 549
LT+L LSL+ N+++ +P L L KL NL LS NH++
Sbjct: 173 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 211
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL 302
T+L++L +++N +P + LTKLQ L+L +N+ S++ L L+NLD+
Sbjct: 176 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI-----SDLRALAGLKNLDV 224
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 82/200 (41%), Gaps = 61/200 (30%)
Query: 392 PSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQ 451
P+ I FS+++F+ + L + +T N N S+ + N S++ V+ G Q
Sbjct: 6 PTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIKSVQ--GIQ 60
Query: 452 FTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI----------- 500
+ N+TK F L+GN+ +I P +NL L LD N++
Sbjct: 61 YLPNVTKLF----------LNGNKLT-DIKP-LANLKNLGWLFLDENKVKDLSSLKDLKK 108
Query: 501 -------SGGIPA-------------ELGN-----------LTRLGVLSLDSNELTGKIP 529
GI LGN LT+L LSL+ N+++ +P
Sbjct: 109 LKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP 168
Query: 530 TDLGKLVKLFNLNLSNNHLT 549
L L KL NL LS NH++
Sbjct: 169 --LACLTKLQNLYLSKNHIS 186
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 7/56 (12%)
Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL 302
T+L++L +++N +P + LTKLQ L+L +N+ S++ L L+NLD+
Sbjct: 151 TKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKNHI-----SDLRALCGLKNLDV 199
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 3 DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYL 62
D++EL YL D N +P +LS+ + + +DL N + T FS+M L L L
Sbjct: 32 DVTEL-YL---DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
Query: 63 NELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTEN 112
N L P ++L L L N +S ++PE F +L L +L + N
Sbjct: 88 NRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 503 GIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTEL 562
GIP ++ L LD N+ T +P +L L ++LSNN ++ +S SN+T+L
Sbjct: 28 GIPRDVTELY------LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80
Query: 563 AYLDLSNNKLTGDVPQ 578
L LS N+L P+
Sbjct: 81 LTLILSYNRLRCIPPR 96
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Query: 435 CLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQ 494
C C+ L+ V N+ + K G+ + + L GNQF + + ++L+ +
Sbjct: 4 CPTECTCLDTVVRCSNKGLKVLPK--GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLID 60
Query: 495 LDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPK 554
L NRIS N+T+L L L N L P L L L+L N ++
Sbjct: 61 LSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG 120
Query: 555 SISNLTELAYLDLSNNKLTGDV 576
+ ++L+ L++L + N L D
Sbjct: 121 AFNDLSALSHLAIGANPLYCDC 142
Score = 29.3 bits (64), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 600 IPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISL 659
+P L N L ++DLS+N +S Q +T L L LS N+L P + + SL
Sbjct: 46 VPKELSNYKHLT-LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 660 RSVDFSDNELT 670
R + N+++
Sbjct: 105 RLLSLHGNDIS 115
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 6/70 (8%)
Query: 516 VLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGD 575
VL+L SN LTG + L VK+ L+L NN + IPK +++L L L++++N+L
Sbjct: 432 VLNLSSNMLTGSVFRCLPPKVKV--LDLHNNRIMS-IPKDVTHLQALQELNVASNQLKS- 487
Query: 576 VPQELGRFDK 585
VP G FD+
Sbjct: 488 VPD--GVFDR 495
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 10/132 (7%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK 137
+L LD+SLN L+ +R + LNL+ N G + + ++DL N
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLH---NN 460
Query: 138 FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLC 197
IP D+ + LQ + + +N +L +LQ++ L N + T C
Sbjct: 461 RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------C 513
Query: 198 TNLSYLALAVNQ 209
+ YL+ +N+
Sbjct: 514 PGIRYLSEWINK 525
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 484 WGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNL 543
W E ++ L L N ++G + L ++ VL L +N + IP D+ L L LN+
Sbjct: 426 WAE--SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNV 480
Query: 544 SNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVP 577
++N L LT L Y+ L +N P
Sbjct: 481 ASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 673 AVTMRVTDKCDVFSFGVVALEVMMG-------RHPGELI----TSLSGELFLKDVLDQRL 721
A+ +T K D++SFGVV LE++ G R P L+ E ++D +D+++
Sbjct: 206 ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM 265
Query: 722 PPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQELSAKT 764
EA+ +VA C + RP ++ V Q L T
Sbjct: 266 NDADSTSVEAM---YSVASQCLHEKKNKRPDIKKVQQLLQEMT 305
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 673 AVTMRVTDKCDVFSFGVVALEVMMG-------RHPGELI----TSLSGELFLKDVLDQRL 721
A+ +T K D++SFGVV LE++ G R P L+ E ++D +D+++
Sbjct: 206 ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM 265
Query: 722 PPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQELSAKT 764
EA+ +VA C + RP ++ V Q L T
Sbjct: 266 NDADSTSVEAM---YSVASQCLHEKKNKRPDIKKVQQLLQEMT 305
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 6/123 (4%)
Query: 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN--VSKLSNLIDLRLAT 135
++ Y+DLSLN ++ L E F+ L L++L + E Q G + N LS+LI L+L
Sbjct: 31 HVNYVDLSLNSIAEL-NETSFSRLQDLQFLKV-EQQTPGLVIRNNTFRGLSSLIILKLDY 88
Query: 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSS--LGQLKNLQHLDLRMNALNYTIPPE 193
N+F G ++NL+++ L + G + S L +L+ L LR N + P
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148
Query: 194 LGL 196
L
Sbjct: 149 FFL 151
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 43/101 (42%), Gaps = 23/101 (22%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
L+ L+ L++ NL+GA+ L GNF F + SL L L N
Sbjct: 102 LANLEVLTLTQCNLDGAV--------------LSGNF--------FKPLTSLEMLVLRDN 139
Query: 64 ELT-LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGK 103
+ ++ SF L R LDL+ NK+ + E L GK
Sbjct: 140 NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGK 180
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 23/153 (15%)
Query: 31 VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLS 90
++ L L N + T + FSS+ SL HL L N L+ S+ +LT+L+L N
Sbjct: 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 91 GLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMS 150
L LF++L KL+ L ++ N+ + F+ D ++
Sbjct: 138 TLGETSLFSHLTKLQIL----------------RVGNM-------DTFTKIQRKDFAGLT 174
Query: 151 NLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRM 183
L+ +E+ + P SL ++N+ HL L M
Sbjct: 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 486 ECRNLSNLQLDRNRISGGIPAELGNL-----TRLGVLSLDSNELTGKIPTDLGKLVKLFN 540
E N ++L DRN I G L ++ + L L +N +T +DL + V L
Sbjct: 21 ESSNQASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQA 80
Query: 541 LNLSNNHLTGEIPKSISNLTELAYLDLSNNKLT 573
L L++N + S S+L L +LDLS N L+
Sbjct: 81 LVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 23/153 (15%)
Query: 31 VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLS 90
++ L L N + T + FSS+ SL HL L N L+ S+ +LT+L+L N
Sbjct: 52 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 111
Query: 91 GLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMS 150
L LF++L KL+ L ++ N+ + F+ D ++
Sbjct: 112 TLGETSLFSHLTKLQIL----------------RVGNM-------DTFTKIQRKDFAGLT 148
Query: 151 NLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRM 183
L+ +E+ + P SL ++N+ HL L M
Sbjct: 149 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 181
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 492 NLQLDRNRISGGIPAELGNL-----TRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNN 546
+L DRN I G L ++ + L L +N +T +DL + V L L L++N
Sbjct: 1 SLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN 60
Query: 547 HLTGEIPKSISNLTELAYLDLSNNKLT 573
+ S S+L L +LDLS N L+
Sbjct: 61 GINTIEEDSFSSLGSLEHLDLSYNYLS 87
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 14/103 (13%)
Query: 673 AVTMRVTDKCDVFSFGVVALEVMMG-------RHPGELI----TSLSGELFLKDVLDQRL 721
A+ +T K D++SFGVV LE++ G R P L+ E ++D +D+++
Sbjct: 200 ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKM 259
Query: 722 PPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQELSAKT 764
EA+ +VA C + RP ++ V Q L T
Sbjct: 260 NDADSTSVEAMY---SVASQCLHEKKNKRPDIKKVQQLLQEMT 299
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 49 FSSMPSLTHLGLYLNELTLEFPSFILT-CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYL 107
+ M +L+HL L N E PS + NL ++ NKL + P +F + KL+ L
Sbjct: 143 LTDMRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQM-PRGIFGKMPKLKQL 199
Query: 108 NLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIP 143
NL NQ + +L++L + L TN + P
Sbjct: 200 NLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 19/138 (13%)
Query: 72 FILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDL 131
F T R LT+ IP L T++ L +L L N + S L NL +
Sbjct: 128 FRFTTRRLTH-----------IPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESI 175
Query: 132 RLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIP 191
+NK G G M L+ + L +N +L +LQ + L N + +
Sbjct: 176 EFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS-- 233
Query: 192 PELGLCTNLSYLALAVNQ 209
C + YL+ +N+
Sbjct: 234 -----CPRIDYLSRWLNK 246
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 5/93 (5%)
Query: 488 RNLSNLQLDRNRISGGIPAEL-GNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNN 546
RNLS+L+L N +P+ L +L L + SN+L GK+ KL LNL++N
Sbjct: 147 RNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASN 204
Query: 547 HLTGEIPKSI-SNLTELAYLDLSNNKLTGDVPQ 578
L +P I LT L + L N P+
Sbjct: 205 QLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPR 236
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 490 LSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLT 549
L +L L N+I+ L LT+L LSL+ N+++ +P L L KL NL LS NH++
Sbjct: 133 LESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 7/56 (12%)
Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL 302
T+L++L +++N + +I P GL TKLQ L+L +N+ S++ L L+NLD+
Sbjct: 153 TKLDTLSLEDNQ-ISDIVPLAGL-TKLQNLYLSKNHI-----SDLRALAGLKNLDV 201
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 86/214 (40%), Gaps = 32/214 (14%)
Query: 25 LSSLRKVRYLDLGGNFLETPDWS--KFSSMPSLTHLGLYLNE-LTLEFPSFILTCRNLTY 81
L L ++ LDL N +E D + ++ L L L NE L L+ +F C L
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFK-ECPQLEL 401
Query: 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTE------------------------NQFQGK 117
LDL+ +L P+ F NL L+ LNLT N FQ
Sbjct: 402 LDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDG 461
Query: 118 LSPNVSKLSNLIDLRLATNKFSGPIPGD---IGSMSNLQLVELFNNSFTGQIPSSLGQLK 174
+ L + L + G + D S+ + V+L +NS T SL LK
Sbjct: 462 TITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLK 521
Query: 175 NLQHLDLRMNALNYTIPPELGLCTNLSYLALAVN 208
+ +L+L N++N P L + + S + L+ N
Sbjct: 522 GI-YLNLAANSINIISPRLLPILSQQSTINLSHN 554
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 100/259 (38%), Gaps = 31/259 (11%)
Query: 418 LEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFV 477
L+EL + + G LP+ ++ + L ++ N F + P L + + GN
Sbjct: 277 LQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGN--- 332
Query: 478 GEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVK 537
+ + + G +LGNL L LS + E + L L
Sbjct: 333 -----------------VKKLHLGVGCLEKLGNLQTLD-LSHNDIEASDCCSLQLKNLSH 374
Query: 538 LFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXX 597
L LNLS+N G ++ +L LDL+ +L + PQ F
Sbjct: 375 LQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQ--SPFQNLHFLQVLNLTYC 432
Query: 598 GEIPSN---LGNLFVLQYMLDLSSNSLS-GTIPQE--LGKLTSLEILNLSRNQLSGRIPA 651
SN L L VL++ L+L N GTI + L + SLE+L LS L
Sbjct: 433 FLDTSNQHLLAGLPVLRH-LNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQ 491
Query: 652 SLSSMISLRSVDFSDNELT 670
+ S+ + VD S N LT
Sbjct: 492 AFHSLGKMSHVDLSHNSLT 510
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 82/197 (41%), Gaps = 32/197 (16%)
Query: 25 LSSLRKVRYLDLGGNFLETPDWS--KFSSMPSLTHLGLYLNE-LTLEFPSFILTCRNLTY 81
L +L +R LDL + +ET D + ++ L L L NE L+L+ +F C L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLEL 404
Query: 82 LDLSLNKLS------------------------GLIPERLFTNLGKLEYLNLTENQFQGK 117
LDL+ +L + E+LF L L++LNL N F
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464
Query: 118 LSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQL---VELFNNSFTGQIPSSLGQLK 174
+ L L L + F D + ++L++ V+L +N T +L LK
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524
Query: 175 NLQHLDLRMNALNYTIP 191
+ +L+L N ++ +P
Sbjct: 525 GI-YLNLASNHISIILP 540
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 78/187 (41%), Gaps = 10/187 (5%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
S LQ L + +L +P L L ++ L L N E S+ PSLTHL + N
Sbjct: 277 FSGLQELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
Query: 64 ELTLEFPSFIL-TCRNLTYLDLSLNKLSGLIPERL-FTNLGKLEYLNLTENQFQGKLSPN 121
LE + L NL LDLS + + L NL L+ LNL+ N+ LS
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE---PLSLK 392
Query: 122 VSKLSNLIDLRLATNKFSGPIPGDIGS-MSNLQLVELFNNSFTGQIPSS---LGQLKNLQ 177
L L F+ D S NL L+++ N S + SS L LQ
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452
Query: 178 HLDLRMN 184
HL+L+ N
Sbjct: 453 HLNLQGN 459
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 268 GLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLS 308
G+ T Q L+LY N + P ++LT L LDL NQL+
Sbjct: 35 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 75
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 493 LQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEI 552
L L N+I+ P LT+L L LD+N+LT KL +L L+L++N L I
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SI 101
Query: 553 PK-SISNLTELAYLDLSNN 570
P+ + NL L ++ L NN
Sbjct: 102 PRGAFDNLKSLTHIWLLNN 120
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 500 ISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNL 559
+ GIP T VL L N++T P +L +L L+L NN LT L
Sbjct: 32 VPTGIP------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 85
Query: 560 TELAYLDLSNNKLTGDVPQELGRFD 584
T+L L L++N+L +P+ G FD
Sbjct: 86 TQLTQLSLNDNQLKS-IPR--GAFD 107
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 50 SSMPSLTH-LGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN 108
+ +P+ T L LY N++T P LT LDL N+L+ ++P +F L +L L+
Sbjct: 34 TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLS 92
Query: 109 LTENQFQGKLSPNVSKLSNLIDLRLATNKF 138
L +NQ + L +L + L N +
Sbjct: 93 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 122
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 268 GLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLS 308
G+ T Q L+LY N + P ++LT L LDL NQL+
Sbjct: 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 493 LQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEI 552
L L N+I+ P LT+L L LD+N+LT KL +L L+L++N L I
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK-SI 93
Query: 553 PK-SISNLTELAYLDLSNN 570
P+ + NL L ++ L NN
Sbjct: 94 PRGAFDNLKSLTHIWLLNN 112
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 500 ISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNL 559
+ GIP T VL L N++T P +L +L L+L NN LT L
Sbjct: 24 VPTGIP------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKL 77
Query: 560 TELAYLDLSNNKLTGDVPQELGRFD 584
T+L L L++N+L +P+ G FD
Sbjct: 78 TQLTQLSLNDNQLKS-IPR--GAFD 99
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 50 SSMPSLTH-LGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN 108
+ +P+ T L LY N++T P LT LDL N+L+ ++P +F L +L L+
Sbjct: 26 TGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLS 84
Query: 109 LTENQFQGKLSPNVSKLSNLIDLRLATNKF 138
L +NQ + L +L + L N +
Sbjct: 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPW 114
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 475 QFVGEISPDWGECRNLSNLQ---LDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTD 531
Q E W LS+LQ L+ N ++ P +LT L LSL+SN LT D
Sbjct: 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND 523
Query: 532 LGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRF 583
L +++ L++S N L P L+ LD+++NK + EL F
Sbjct: 524 LPANLEI--LDISRNQLLAPNPDV---FVSLSVLDITHNKFICEC--ELSTF 568
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 31 VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLS 90
VR+LDL F+ + + F ++ L L L N++ NL L+LS N L
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327
Query: 91 GLIPERLFTNLGKLEYLNLTENQ---FQGKLSPNVSKLSNLIDLR---LATNKFSGPIP 143
L F L K+ Y++L +N Q + + KL L DLR L T F IP
Sbjct: 328 ELYSSN-FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL-DLRDNALTTIHFIPSIP 384
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Query: 81 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSG 140
+LDLS + L R+F L L+ LNL N+ L NL L L+ N
Sbjct: 270 HLDLSHGFVFSL-NSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328
Query: 141 PIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 186
+ + + ++L N + L+ LQ LDLR NAL
Sbjct: 329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%)
Query: 488 RNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNH 547
++L L L N+I+ L L VL+L N L ++ L K+ ++L NH
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349
Query: 548 LTGEIPKSISNLTELAYLDLSNNKLT 573
+ ++ L +L LDL +N LT
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNALT 375
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 466 LDFIRLSGNQFVGEISPDWGECRN-LSNLQLDRNRISG 502
L F L+ N +S DWG+C N N+ L+ +SG
Sbjct: 176 LSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 14/103 (13%)
Query: 673 AVTMRVTDKCDVFSFGVVALEVMMG-------RHPGELI----TSLSGELFLKDVLDQRL 721
A+ +T K D++SFGVV LE++ G R P L+ E ++D +D++
Sbjct: 197 ALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKX 256
Query: 722 PPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQELSAKT 764
EA +VA C + RP ++ V Q L T
Sbjct: 257 NDADSTSVEA---XYSVASQCLHEKKNKRPDIKKVQQLLQEXT 296
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 490 LSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLT 549
L +L L N+I+ L LT+L LSL+ N+++ +P L L KL NL LS NH++
Sbjct: 131 LESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 186
Query: 550 GEIPKSISNLTELAYLDL 567
++++ L L L+L
Sbjct: 187 D--LRALAGLKNLDVLEL 202
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 7/56 (12%)
Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL 302
T+L++L +++N + +I P GL TKLQ L+L +N+ S++ L L+NLD+
Sbjct: 151 TKLDTLSLEDNQ-ISDIVPLAGL-TKLQNLYLSKNHI-----SDLRALAGLKNLDV 199
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 490 LSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLT 549
L +L L N+I+ L LT+L LSL+ N+++ +P L L KL NL LS NH++
Sbjct: 154 LESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 209
Query: 550 GEIPKSISNLTELAYLDL 567
++++ L L L+L
Sbjct: 210 D--LRALAGLKNLDVLEL 225
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 7/56 (12%)
Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL 302
T+L++L +++N + +I P GL TKLQ L+L +N+ S++ L L+NLD+
Sbjct: 174 TKLDTLSLEDNQ-ISDIVPLAGL-TKLQNLYLSKNHI-----SDLRALAGLKNLDV 222
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 490 LSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLT 549
L +L L N+I+ L LT+L LSL+ N+++ +P L L KL NL LS NH++
Sbjct: 154 LESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 209
Query: 550 GEIPKSISNLTELAYLDL 567
++++ L L L+L
Sbjct: 210 D--LRALAGLKNLDVLEL 225
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 7/56 (12%)
Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL 302
T+L++L +++N + +I P GL TKLQ L+L +N+ S++ L L+NLD+
Sbjct: 174 TKLDTLSLEDNQ-ISDIVPLAGL-TKLQNLYLSKNHI-----SDLRALAGLKNLDV 222
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 490 LSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLT 549
L +L L N+I+ L LT+L LSL+ N+++ +P L L KL NL LS NH++
Sbjct: 154 LESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 209
Query: 550 GEIPKSISNLTELAYLDL 567
++++ L L L+L
Sbjct: 210 D--LRALAGLKNLDVLEL 225
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 7/56 (12%)
Query: 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL 302
T+L++L +++N + +I P GL TKLQ L+L +N+ S++ L L+NLD+
Sbjct: 174 TKLDTLSLEDNQ-ISDIVPLAGL-TKLQNLYLSKNHI-----SDLRALAGLKNLDV 222
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 243 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL 302
I + +LE L ++ + + N PP G L+ L L + +P +I +LT LE LDL
Sbjct: 225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Query: 303 SG 304
G
Sbjct: 285 RG 286
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 68/160 (42%), Gaps = 13/160 (8%)
Query: 490 LSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDL------GKLVKLFNLNL 543
L L L RN + +PA + +L RL LS+ + ++P L G+ L NL
Sbjct: 129 LETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 544 SNNHLTG--EIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKXXXXXXXXXXXXGEIP 601
TG +P SI+NL L L + N+ L+ P + K P
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYP 246
Query: 602 SNLGNLFVLQYM-LDLSSNSLSGTIPQELGKLTSLEILNL 640
G L+ + L SN L T+P ++ +LT LE L+L
Sbjct: 247 PIFGGRAPLKRLILKDCSNLL--TLPLDIHRLTQLEKLDL 284
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 19/85 (22%)
Query: 679 TDKCDVFSFGVVALEVM-MGR--HPG----ELITSLSGELFLKDVLDQRLPPPTGQLAEA 731
T K DV+SFG++ +E++ GR +PG E+I +L R+P P E
Sbjct: 190 TIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALER--------GYRMPRPENCPEE- 240
Query: 732 VVLTINVALACTSTTPDTRPSMRFV 756
N+ + C P+ RP+ ++
Sbjct: 241 ---LYNIMMRCWKNRPEERPTFEYI 262
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 32.7 bits (73), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 19/85 (22%)
Query: 679 TDKCDVFSFGVVALEVM-MGR--HPG----ELITSLSGELFLKDVLDQRLPPPTGQLAEA 731
T K DV+SFG++ +E++ GR +PG E+I +L R+P P E
Sbjct: 363 TIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALE--------RGYRMPRPENCPEE- 413
Query: 732 VVLTINVALACTSTTPDTRPSMRFV 756
N+ + C P+ RP+ ++
Sbjct: 414 ---LYNIMMRCWKNRPEERPTFEYI 435
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 32.7 bits (73), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 49/124 (39%), Gaps = 21/124 (16%)
Query: 646 SGRIPASLSSMISLRSVDFSDNELTELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELI 704
R+P +++ SL+ T R T K DV+SFGV+ E++ G P I
Sbjct: 187 HARLPVKWTALESLQ--------------TYRFTTKSDVWSFGVLLWELLTRGAPPYRHI 232
Query: 705 TSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQELSAKT 764
FL +RLP P +++ V C P RP+ R + E+
Sbjct: 233 DPFDLTHFLAQ--GRRLPQPE-YCPDSL---YQVMQQCWEADPAVRPTFRVLVGEVEQIV 286
Query: 765 QAYL 768
A L
Sbjct: 287 SALL 290
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 32.7 bits (73), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 19/85 (22%)
Query: 679 TDKCDVFSFGVVALEVM-MGR--HPG----ELITSLSGELFLKDVLDQRLPPPTGQLAEA 731
T K DV+SFG++ +E++ GR +PG E+I +L R+P P E
Sbjct: 347 TIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALE--------RGYRMPRPENCPEE- 397
Query: 732 VVLTINVALACTSTTPDTRPSMRFV 756
N+ + C P+ RP+ ++
Sbjct: 398 ---LYNIMMRCWKNRPEERPTFEYI 419
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 32/195 (16%)
Query: 23 FQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGL---YLNELTLEFPSFI-LTCRN 78
F L+ + YL++ N + + + F+ + SL +L L + + TL +F+ L
Sbjct: 323 FSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSP 382
Query: 79 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSK-LSNLIDLRLATNK 137
L L+L+ N +S I F+ LG+L L+L N+ + KLS + L N+ ++ L+ NK
Sbjct: 383 LLTLNLTKNHISK-IANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNK 441
Query: 138 F--------------------------SGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLG 171
+ P + NL +++L NN+ L
Sbjct: 442 YLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLE 501
Query: 172 QLKNLQHLDLRMNAL 186
L+NL+ LD + N L
Sbjct: 502 GLENLEILDFQHNNL 516
Score = 29.3 bits (64), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 41/221 (18%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETP--------------DWSK- 48
L L+YLS+ NN+ P L +RYL L F + W K
Sbjct: 271 LPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKY 330
Query: 49 ------------------FSSMPSLTHLGL---YLNELTLEFPSFI-LTCRNLTYLDLSL 86
F+ + SL +L L + + TL +F+ L L L+L+
Sbjct: 331 LEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTK 390
Query: 87 NKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSK-LSNLIDLRLATNKFSGPIPGD 145
N +S I F+ LG+L L+L N+ + KLS + L N+ ++ L+ NK+
Sbjct: 391 NHISK-IANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSS 449
Query: 146 IGSMSNLQLVELFNNSFTGQ--IPSSLGQLKNLQHLDLRMN 184
+ +LQ + L + PS L+NL LDL N
Sbjct: 450 FALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNN 490
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 28/137 (20%)
Query: 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLN 63
L+ L L + N+LN + +RYLDL N L T D FS + +L L LY N
Sbjct: 63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNN 122
Query: 64 ELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQ---FQGKLSP 120
+ ++ F ++ +L+ L L++NQ F +L
Sbjct: 123 HIV-------------------------VVDRNAFEDMAQLQKLYLSQNQISRFPVELIK 157
Query: 121 NVSKLSNLIDLRLATNK 137
+ +KL L+ L L++NK
Sbjct: 158 DGNKLPKLMLLDLSSNK 174
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 33/186 (17%)
Query: 25 LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDL 84
L + ++ L L + + T + F S+ SL H LDL
Sbjct: 72 LRACANLQVLILKSSRINTIEGDAFYSLGSLEH------------------------LDL 107
Query: 85 SLNKLSGLIPERLFTNLGKLEYLNLTENQFQ----GKLSPNVSKLSNLIDLRLA-TNKFS 139
S N LS L F L L+YLNL N +Q L PN L+NL LR+ FS
Sbjct: 108 SDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN---LTNLQTLRIGNVETFS 163
Query: 140 GPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTN 199
D +++L +E+ S SL ++++ HL L ++ + + + ++
Sbjct: 164 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 223
Query: 200 LSYLAL 205
+ YL L
Sbjct: 224 VRYLEL 229
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 131 LRLATNKFSGPIPGDIGSMSNLQLVELFN---NSFTGQIPSSLGQLKNLQHLDLRMNALN 187
L L+ NK + GD+ + +NLQ++ L + N+ G SLG +L+HLDL N L+
Sbjct: 57 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG---SLEHLDLSDNHLS 113
Query: 188 YTIPPELGLCTNLSYLALAVN 208
G ++L YL L N
Sbjct: 114 SLSSSWFGPLSSLKYLNLMGN 134
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 532 LGKLVKLFNLNLSNNHLTG-EIPKSISNLTELAYLDLSNNKL 572
+G L L LN+++N + ++P+ SNLT L +LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 532 LGKLVKLFNLNLSNNHLTG-EIPKSISNLTELAYLDLSNNKL 572
+G L L LN+++N + ++P+ SNLT L +LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 532 LGKLVKLFNLNLSNNHLTG-EIPKSISNLTELAYLDLSNNKL 572
+G L L LN+++N + ++P+ SNLT L +LDLS+NK+
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 532 LGKLVKLFNLNLSNNHLTG-EIPKSISNLTELAYLDLSNNKL 572
+G L L LN+++N + ++P+ SNLT L +LDLS+NK+
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 532 LGKLVKLFNLNLSNNHLTG-EIPKSISNLTELAYLDLSNNKL 572
+G L L LN+++N + ++P+ SNLT L +LDLS+NK+
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 73/191 (38%), Gaps = 31/191 (16%)
Query: 6 ELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHL-GLYLNE 64
ELQ L + + SL + L L GN +++ FS + SL L L N
Sbjct: 55 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNL 114
Query: 65 LTLE-FPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGK------ 117
+LE FP I + L L+++ N + F+NL LE+L+L+ N+ Q
Sbjct: 115 ASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 172
Query: 118 ---------------------LSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVE 156
+ P K L +L L TN+ G +++LQ +
Sbjct: 173 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 232
Query: 157 LFNNSFTGQIP 167
L N + P
Sbjct: 233 LHTNPWDCSCP 243
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 76/186 (40%), Gaps = 33/186 (17%)
Query: 25 LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDL 84
L + ++ L L + + T + F S+ SL H LDL
Sbjct: 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEH------------------------LDL 81
Query: 85 SLNKLSGLIPERLFTNLGKLEYLNLTENQFQ----GKLSPNVSKLSNLIDLRLA-TNKFS 139
S N LS L F L L+YLNL N +Q L PN L+NL LR+ FS
Sbjct: 82 SDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN---LTNLQTLRIGNVETFS 137
Query: 140 GPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTN 199
D +++L +E+ S SL ++++ HL L ++ + + + ++
Sbjct: 138 EIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSS 197
Query: 200 LSYLAL 205
+ YL L
Sbjct: 198 VRYLEL 203
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 131 LRLATNKFSGPIPGDIGSMSNLQLVELFN---NSFTGQIPSSLGQLKNLQHLDLRMNALN 187
L L+ NK + GD+ + +NLQ++ L + N+ G SLG +L+HLDL N L+
Sbjct: 31 LDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLG---SLEHLDLSDNHLS 87
Query: 188 YTIPPELGLCTNLSYLALAVN 208
G ++L YL L N
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGN 108
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 42/91 (46%), Gaps = 18/91 (19%)
Query: 680 DKCDVFSFGVVALEVMMGR---HPGELITSLSGELFLKDVLDQRLP---PPTGQLAEAVV 733
+K DVFSFG+V E+ +GR P L ++ L ++ LD+ P PP+
Sbjct: 201 EKVDVFSFGIVLCEI-IGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCPPS-------- 251
Query: 734 LTINVALACTSTTPDTRPSMRFVAQELSAKT 764
+ + C P+ RPS FV E +T
Sbjct: 252 -FFPITVRCCDLDPEKRPS--FVKLEHWLET 279
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 458 KAFGVHPRLDFIRLSGNQFVGEISPDWGECR----NLSNLQLDRNRISGGIPAELGNLTR 513
+A G+ P F + + +G + P +C S+L L++ +P +L T
Sbjct: 2 EASGIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEK------VPKDLPPDTA 55
Query: 514 LGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLT 573
L L L +N++T D L L L L NN ++ P + + L +L L LS N+L
Sbjct: 56 L--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 574 GDVPQELGR 582
++P+++ +
Sbjct: 114 -ELPEKMPK 121
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 19/191 (9%)
Query: 3 DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFL-ETPDWSKFSSMP-SLTHLGL 60
+L L L + +N ++ P + L K+ L L N L E P+ MP +L L +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE-----KMPKTLQELRV 128
Query: 61 YLNELTLEFPSFILTCRNLTYLDLSLNKL-SGLIPERLFTNLGKLEYLNLTENQF----Q 115
+ NE+T S + ++L N L S I F + KL Y+ + + Q
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188
Query: 116 GKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKN 175
G L P+ L +L L NK + + ++NL + L NS + SL +
Sbjct: 189 G-LPPS------LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241
Query: 176 LQHLDLRMNAL 186
L+ L L N L
Sbjct: 242 LRELHLNNNKL 252
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 13/129 (10%)
Query: 458 KAFGVHPRLDFIRLSGNQFVGEISPDWGECR----NLSNLQLDRNRISGGIPAELGNLTR 513
+A G+ P F + + +G + P +C S+L L++ +P +L T
Sbjct: 2 EASGIGPEEHFPEVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEK------VPKDLPPDTA 55
Query: 514 LGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLT 573
L L L +N++T D L L L L NN ++ P + + L +L L LS N+L
Sbjct: 56 L--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 113
Query: 574 GDVPQELGR 582
++P+++ +
Sbjct: 114 -ELPEKMPK 121
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 80/191 (41%), Gaps = 19/191 (9%)
Query: 3 DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFL-ETPDWSKFSSMP-SLTHLGL 60
+L L L + +N ++ P + L K+ L L N L E P+ MP +L L +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE-----KMPKTLQELRV 128
Query: 61 YLNELTLEFPSFILTCRNLTYLDLSLNKL-SGLIPERLFTNLGKLEYLNLTENQF----Q 115
+ NE+T S + ++L N L S I F + KL Y+ + + Q
Sbjct: 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ 188
Query: 116 GKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKN 175
G L P+ L +L L NK + + ++NL + L NS + SL +
Sbjct: 189 G-LPPS------LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241
Query: 176 LQHLDLRMNAL 186
L+ L L N L
Sbjct: 242 LRELHLNNNKL 252
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex With
G Alpha 13
Length = 362
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 21 IPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLT 80
+PF++ +D+GG E W F S+T + ++ + EF ++ R
Sbjct: 201 VPFKM--------VDVGGQRSERKRW--FECFDSVTSILFLVS--SSEFDQVLMEDRQTN 248
Query: 81 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTE 111
L SLN ++ R+F+N+ + +LN T+
Sbjct: 249 RLTESLNIFETIVNNRVFSNVSIILFLNKTD 279
>pdb|2RFT|A Chain A, Crystal Structure Of Influenza B Virus Hemagglutinin In
Complex With Lsta Receptor Analog
pdb|2RFU|A Chain A, Crystal Structure Of Influenza B Virus Hemagglutinin In
Complex With Lstc Receptor Analog
Length = 344
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 89 LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGS 148
++G+IP L T K + NL Q +GKL PN ++L D+ L K G IP S
Sbjct: 26 VTGVIP--LTTTPTKSHFANLKGTQTRGKLCPNCLNCTDL-DVALGRPKCMGTIPSAKAS 82
Query: 149 M 149
+
Sbjct: 83 I 83
>pdb|3BT6|A Chain A, Crystal Structure Of Influenza B Virus Hemagglutinin
Length = 342
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 89 LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGS 148
++G+IP L T K + NL Q +GKL PN ++L D+ L K G IP S
Sbjct: 26 VTGVIP--LTTTPTKSHFANLKGTQTRGKLCPNCLNCTDL-DVALGRPKCMGTIPSAKAS 82
Query: 149 M 149
+
Sbjct: 83 I 83
>pdb|3CX7|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp-Alf4
pdb|3CX8|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gtp-Gamma-S
Length = 338
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 13 YDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSF 72
YD + +PF++ +D+GG E W F S+T + ++ + EF
Sbjct: 170 YDFEIKN-VPFKM--------VDVGGQRSERKRW--FECFDSVTSILFLVS--SSEFDQV 216
Query: 73 ILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE 111
++ R L SLN ++ R+F+N+ + +LN T+
Sbjct: 217 LMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 255
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 22 PFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFP-SFILTCRNLT 80
P S +K+R +DL N + F + SL L LY N++T E P S +L
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQ 107
Query: 81 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKF 138
L L+ NK++ L + F +L L L+L +N+ Q S L + + LA N F
Sbjct: 108 LLLLNANKINCLRVD-AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 599 EIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMIS 658
EIP+NL + L N++ P L ++LS NQ+S P + + S
Sbjct: 25 EIPTNLPETIT---EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81
Query: 659 LRSVDFSDNELTELAVTM 676
L S+ N++TEL ++
Sbjct: 82 LNSLVLYGNKITELPKSL 99
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINV 738
T+K D +SF ++ ++ G P + S F+ + ++ L P + + NV
Sbjct: 206 TEKADTYSFAMILYTILTGEGPFDEY-SYGKIKFINMIREEGLRPTIPEDCPPRLR--NV 262
Query: 739 ALACTSTTPDTRPSMRFVAQELS 761
C S P RP ++ +ELS
Sbjct: 263 IELCWSGDPKKRPHFSYIVKELS 285
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINV 738
T+K D +SF ++ ++ G P + S F+ + ++ L P + + NV
Sbjct: 206 TEKADTYSFAMILYTILTGEGPFDEY-SYGKIKFINMIREEGLRPTIPEDCPPRLR--NV 262
Query: 739 ALACTSTTPDTRPSMRFVAQELS 761
C S P RP ++ +ELS
Sbjct: 263 IELCWSGDPKKRPHFSYIVKELS 285
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINV 738
T+K D +SF ++ ++ G P + S F+ + ++ L P + + NV
Sbjct: 206 TEKADTYSFAMILYTILTGEGPFDEY-SYGKIKFINMIREEGLRPTIPEDCPPRLR--NV 262
Query: 739 ALACTSTTPDTRPSMRFVAQELS 761
C S P RP ++ +ELS
Sbjct: 263 IELCWSGDPKKRPHFSYIVKELS 285
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 3/118 (2%)
Query: 22 PFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFP-SFILTCRNLT 80
P S +K+R +DL N + F + SL L LY N++T E P S +L
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQ 107
Query: 81 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKF 138
L L+ NK++ L + F +L L L+L +N+ Q S L + + LA N F
Sbjct: 108 LLLLNANKINXLRVD-AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 599 EIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMIS 658
EIP+NL + L N++ P L ++LS NQ+S P + + S
Sbjct: 25 EIPTNLPETIT---EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81
Query: 659 LRSVDFSDNELTELAVTM 676
L S+ N++TEL ++
Sbjct: 82 LNSLVLYGNKITELPKSL 99
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 534 KLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQEL 580
KLV L+ L HL +++ N+ E++Y +L + TGD P ++
Sbjct: 284 KLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKI 330
>pdb|1Q2X|A Chain A, Crystal Structure Of The E243d Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Substrate Aspartate Semialdehyde
pdb|1Q2X|B Chain B, Crystal Structure Of The E243d Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Substrate Aspartate Semialdehyde
Length = 371
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 10/114 (8%)
Query: 476 FVGEISPDWGECRNLSNLQLDRNRISG----GIPAELGNLTRLGVLSLDSNELTGKIPTD 531
++ ++ P+ G+ ++ + N+I G IP + G R+G L S T K+ D
Sbjct: 230 WIDKLLPETGQTKDEWKGYAETNKILGLSDNPIPVD-GLCVRIGALRCHSQAFTIKLKKD 288
Query: 532 LGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDK 585
L L ++ + S+N IP N E+ +L+ K+TG + +GR K
Sbjct: 289 L-PLEEIEQIIASHNEWVKVIP----NDKEITLRELTPAKVTGTLSVPVGRLRK 337
>pdb|1PQU|A Chain A, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|B Chain B, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|C Chain C, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
pdb|1PQU|D Chain D, Crystal Structure Of The H277n Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Nadp, S-Methyl Cysteine Sulfoxide And
Cacodylate
Length = 371
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 10/114 (8%)
Query: 476 FVGEISPDWGECRNLSNLQLDRNRISG----GIPAELGNLTRLGVLSLDSNELTGKIPTD 531
++ ++ P+ G+ + + N+I G IP + G R+G L +S T K+ D
Sbjct: 230 WIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVD-GLCVRIGALRCNSQAFTIKLKKD 288
Query: 532 LGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDK 585
L L ++ + S+N IP N E+ +L+ K+TG + +GR K
Sbjct: 289 L-PLEEIEQIIASHNEWVKVIP----NDKEITLRELTPAKVTGTLSVPVGRLRK 337
>pdb|3SIB|A Chain A, Crystal Structure Of Ure3-Binding Protein, Wild-Type
Length = 220
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 5 SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSM------PSLTHL 58
+ L+ + ++D + NG I F + ++++L N D ++ ++ P+L L
Sbjct: 88 TALRMMRIFDTDFNGHISF-YEFMAMYKFMELAYNLFVMNDRNRSGTLEPHEILPALQQL 146
Query: 59 GLYLNELT 66
G Y+N+ T
Sbjct: 147 GFYINQRT 154
>pdb|1NWC|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Haemophilus Influenzae
pdb|1NWC|B Chain B, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Haemophilus Influenzae
pdb|1TA4|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Haemophilus Influenzae With A Bound Arsenate
pdb|1TB4|A Chain A, Crystal Structure Of Aspartate-Semialdehyde Dehydrogenase
From Haemophilus Influenzae With A Bound Periodate
Length = 371
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 476 FVGEISPDWGECRNLSNLQLDRNRISG----GIPAELGNLTRLGVLSLDSNELTGKIPTD 531
++ ++ P+ G+ + + N+I G IP + G R+G L S T K+ D
Sbjct: 230 WIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVD-GLCVRIGALRCHSQAFTIKLKKD 288
Query: 532 LGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDK 585
L L ++ + S+N IP N E+ +L+ K+TG + +GR K
Sbjct: 289 L-PLEEIEQIIASHNEWVKVIP----NDKEITLRELTPAKVTGTLSVPVGRLRK 337
>pdb|1OZA|A Chain A, Crystal Structure Of The R103l Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Length = 371
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 476 FVGEISPDWGECRNLSNLQLDRNRISG----GIPAELGNLTRLGVLSLDSNELTGKIPTD 531
++ ++ P+ G+ + + N+I G IP + G R+G L S T K+ D
Sbjct: 230 WIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVD-GLCVRIGALRCHSQAFTIKLKKD 288
Query: 532 LGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDK 585
L L ++ + S+N IP N E+ +L+ K+TG + +GR K
Sbjct: 289 L-PLEEIEQIIASHNEWVKVIP----NDKEITLRELTPAKVTGTLSVPVGRLRK 337
>pdb|1PR3|A Chain A, Crystal Structure Of The R103k Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Length = 371
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 476 FVGEISPDWGECRNLSNLQLDRNRISG----GIPAELGNLTRLGVLSLDSNELTGKIPTD 531
++ ++ P+ G+ + + N+I G IP + G R+G L S T K+ D
Sbjct: 230 WIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVD-GLCVRIGALRCHSQAFTIKLKKD 288
Query: 532 LGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDK 585
L L ++ + S+N IP N E+ +L+ K+TG + +GR K
Sbjct: 289 L-PLEEIEQIIASHNEWVKVIP----NDKEITLRELTPAKVTGTLSVPVGRLRK 337
>pdb|3CX6|A Chain A, Crystal Structure Of Pdzrhogef Rgrgs Domain In A Complex
With Galpha-13 Bound To Gdp
Length = 338
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 13/99 (13%)
Query: 13 YDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSF 72
YD + +PF++ +D+GG E W F S+T + ++ + EF
Sbjct: 170 YDFEIKN-VPFKM--------VDVGGLRSERKRW--FECFDSVTSILFLVS--SSEFDQV 216
Query: 73 ILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE 111
++ R L SLN ++ R+F+N+ + +LN T+
Sbjct: 217 LMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 255
>pdb|1PQP|A Chain A, Crystal Structure Of The C136s Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Bound With Aspartate Semialdehyde And Phosphate
Length = 371
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 476 FVGEISPDWGECRNLSNLQLDRNRISG----GIPAELGNLTRLGVLSLDSNELTGKIPTD 531
++ ++ P+ G+ + + N+I G IP + G R+G L S T K+ D
Sbjct: 230 WIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVD-GLCVRIGALRCHSQAFTIKLKKD 288
Query: 532 LGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDK 585
L L ++ + S+N IP N E+ +L+ K+TG + +GR K
Sbjct: 289 L-PLEEIEQIIASHNEWVKVIP----NDKEITLRELTPAKVTGTLSVPVGRLRK 337
>pdb|1NWH|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Haemophilus Influenzae As A Tetrahedral
Hemithioacetal Reaction Intermediate At 2.0 A
pdb|1NWH|B Chain B, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Haemophilus Influenzae As A Tetrahedral
Hemithioacetal Reaction Intermediate At 2.0 A
pdb|1NX6|A Chain A, Crystal Structure Of Aspartate Semialdehyde Dehydrogenase
From Haemophilus Influenzae As A Tetrahedral
Hemithiocetal Reaction Intermediate With Phosphate At
2.15 A
Length = 371
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 476 FVGEISPDWGECRNLSNLQLDRNRISG----GIPAELGNLTRLGVLSLDSNELTGKIPTD 531
++ ++ P+ G+ + + N+I G IP + G R+G L S T K+ D
Sbjct: 230 WIDKLLPETGQTKEEWKGYAETNKILGLSDNPIPVD-GLCVRIGALRCHSQAFTIKLKKD 288
Query: 532 LGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDK 585
L L ++ + S+N IP N E+ +L+ K+TG + +GR K
Sbjct: 289 L-PLEEIEQIIASHNEWVKVIP----NDKEITLRELTPAKVTGTLSVPVGRLRK 337
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP 141
LDLS N+L L L L L L+++ N+ + L L +L L N+
Sbjct: 83 LDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 140
Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIP 191
PG + L+ + L NN+ T L L+NL L L+ N+L YTIP
Sbjct: 141 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIP 189
>pdb|1PU2|A Chain A, Crystal Structure Of The K246r Mutant Of Aspartate
Semialdehyde Dehydrogenase From Haemophilus Influenzae
Length = 371
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 476 FVGEISPDWGECRNLSNLQLDRNRISG----GIPAELGNLTRLGVLSLDSNELTGKIPTD 531
++ ++ P+ G+ + + N+I G IP + G R+G L S T K+ D
Sbjct: 230 WIDKLLPETGQTKEEWRGYAETNKILGLSDNPIPVD-GLCVRIGALRCHSQAFTIKLKKD 288
Query: 532 LGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDK 585
L L ++ + S+N IP N E+ +L+ K+TG + +GR K
Sbjct: 289 L-PLEEIEQIIASHNEWVKVIP----NDKEITLRELTPAKVTGTLSVPVGRLRK 337
>pdb|1SRQ|A Chain A, Crystal Structure Of The Rap1gap Catalytic Domain
pdb|1SRQ|B Chain B, Crystal Structure Of The Rap1gap Catalytic Domain
pdb|1SRQ|C Chain C, Crystal Structure Of The Rap1gap Catalytic Domain
pdb|1SRQ|D Chain D, Crystal Structure Of The Rap1gap Catalytic Domain
Length = 341
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 337 PEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSI 383
P + MA LV DVN ++ + L SRL+ V +NNF +
Sbjct: 77 PNVVQMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGV 123
>pdb|3BRW|A Chain A, Structure Of The Rap-Rapgap Complex
pdb|3BRW|B Chain B, Structure Of The Rap-Rapgap Complex
pdb|3BRW|C Chain C, Structure Of The Rap-Rapgap Complex
Length = 341
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 337 PEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSI 383
P + MA LV DVN ++ + L SRL+ V +NNF +
Sbjct: 77 PNVVQMAKLVCEDVNVDRFYPVLYPKASRLIVTFDEHVISNNFKFGV 123
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP 141
LDLS N+L L L L L L+++ N+ + L L +L L N+
Sbjct: 82 LDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIP 191
PG + L+ + L NN T L L+NL L L+ N+L YTIP
Sbjct: 140 PPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL-YTIP 188
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP 141
LDLS N+L L L L L L+++ N+ + L L +L L N+
Sbjct: 82 LDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIP 191
PG + L+ + L NN T L L+NL L L+ N+L YTIP
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL-YTIP 188
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP 141
LDLS N+L L L L L L+++ N+ + L L +L L N+
Sbjct: 82 LDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIP 191
PG + L+ + L NN+ T L L+NL L L+ N+L YTIP
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIP 188
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP 141
LDLS N+L L L L L L+++ N+ + L L +L L N+
Sbjct: 82 LDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIP 191
PG + L+ + L NN+ T L L+NL L L+ N+L YTIP
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIP 188
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP 141
LDLS N+L L L L L L+++ N+ + L L +L L N+
Sbjct: 82 LDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIP 191
PG + L+ + L NN T L L+NL L L+ N+L YTIP
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL-YTIP 188
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.3 bits (64), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP 141
LDLS N+L L L L L L+++ N+ + L L +L L N+
Sbjct: 82 LDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIP 191
PG + L+ + L NN T L L+NL L L+ N+L YTIP
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL-YTIP 188
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP 141
LDLS N+L L L L L L+++ N+ + L L +L L N+
Sbjct: 82 LDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
Query: 142 IPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIP 191
PG + L+ + L NN T L L+NL L L+ N+L YTIP
Sbjct: 140 PPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL-YTIP 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,978,771
Number of Sequences: 62578
Number of extensions: 849549
Number of successful extensions: 3451
Number of sequences better than 100.0: 145
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 1867
Number of HSP's gapped (non-prelim): 908
length of query: 785
length of database: 14,973,337
effective HSP length: 107
effective length of query: 678
effective length of database: 8,277,491
effective search space: 5612138898
effective search space used: 5612138898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)