Query 003931
Match_columns 785
No_of_seqs 736 out of 4132
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 08:39:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.6E-76 5.5E-81 694.1 49.4 655 5-668 50-738 (768)
2 3rgz_A Protein brassinosteroid 100.0 5.4E-74 1.8E-78 672.8 47.3 632 29-670 50-717 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-61 5.6E-66 562.8 51.2 587 7-622 6-622 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-60 4E-65 555.5 49.5 590 32-649 7-625 (680)
5 3t6q_A CD180 antigen; protein- 100.0 3.1E-55 1E-59 503.1 44.6 535 7-576 14-563 (606)
6 3t6q_A CD180 antigen; protein- 100.0 3.6E-55 1.2E-59 502.5 42.8 540 31-601 14-564 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 6.4E-54 2.2E-58 492.1 41.3 530 32-601 14-562 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 2.5E-53 8.6E-58 487.2 40.5 530 55-626 13-562 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 5.7E-52 2E-56 491.2 41.8 534 9-601 8-564 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 2.1E-51 7.3E-56 486.3 40.2 511 4-573 23-560 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 1.6E-48 5.5E-53 444.3 39.8 511 7-577 9-535 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 1.4E-48 4.8E-53 444.8 38.3 510 56-602 10-536 (570)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-46 3.8E-51 426.8 29.4 489 77-601 5-514 (549)
14 4eco_A Uncharacterized protein 100.0 1.2E-47 4.1E-52 439.0 21.5 456 102-599 81-602 (636)
15 2z81_A CD282 antigen, TOLL-lik 100.0 3E-46 1E-50 423.3 32.3 486 107-646 10-510 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 7E-46 2.4E-50 417.0 26.4 460 57-601 4-485 (520)
17 4eco_A Uncharacterized protein 100.0 8.1E-47 2.8E-51 432.2 19.1 442 53-526 81-601 (636)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-45 5.3E-50 414.1 28.8 453 8-478 3-482 (520)
19 4g8a_A TOLL-like receptor 4; l 100.0 7.8E-44 2.7E-48 411.6 42.0 530 33-600 35-583 (635)
20 4ecn_A Leucine-rich repeat pro 100.0 3.6E-45 1.2E-49 424.1 30.5 393 199-621 424-863 (876)
21 4ecn_A Leucine-rich repeat pro 100.0 6.9E-45 2.4E-49 421.7 28.7 390 136-573 435-864 (876)
22 4g8a_A TOLL-like receptor 4; l 100.0 2.7E-43 9.2E-48 407.1 41.0 528 9-574 35-581 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.2E-42 1.1E-46 390.2 28.7 457 4-477 30-510 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-42 5.8E-47 392.5 25.4 460 56-601 34-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 8.7E-40 3E-44 361.1 28.5 372 8-384 13-412 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.4E-39 4.8E-44 359.4 29.7 365 199-602 31-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 9.7E-39 3.3E-43 349.0 25.8 421 126-653 11-436 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 3.7E-38 1.3E-42 344.3 26.5 413 100-606 9-438 (454)
29 2id5_A Lingo-1, leucine rich r 100.0 1.3E-36 4.4E-41 337.4 29.2 321 8-333 14-334 (477)
30 1o6v_A Internalin A; bacterial 100.0 2.9E-36 1E-40 332.8 30.5 345 4-381 45-389 (466)
31 3bz5_A Internalin-J, INLJ; leu 100.0 2.9E-36 1E-40 329.6 28.3 348 3-413 40-395 (457)
32 1o6v_A Internalin A; bacterial 100.0 1E-35 3.5E-40 328.5 32.0 348 26-407 43-390 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 8.6E-36 2.9E-40 325.9 30.9 356 17-435 30-393 (457)
34 2id5_A Lingo-1, leucine rich r 100.0 2E-35 7E-40 327.8 29.7 323 31-358 13-335 (477)
35 3o6n_A APL1; leucine-rich repe 100.0 4.4E-34 1.5E-38 308.1 27.7 312 27-358 43-354 (390)
36 4fmz_A Internalin; leucine ric 100.0 2.1E-33 7.2E-38 298.0 29.5 307 25-356 40-346 (347)
37 4fmz_A Internalin; leucine ric 100.0 2.2E-33 7.4E-38 297.9 27.7 305 3-332 42-346 (347)
38 3o6n_A APL1; leucine-rich repe 100.0 1.3E-33 4.3E-38 304.6 25.2 311 52-382 44-354 (390)
39 3oja_B Anopheles plasmodium-re 100.0 2.2E-33 7.4E-38 319.4 27.7 313 27-359 49-361 (597)
40 3oja_B Anopheles plasmodium-re 100.0 5.5E-33 1.9E-37 316.0 25.3 313 51-383 49-361 (597)
41 1xku_A Decorin; proteoglycan, 100.0 3.2E-31 1.1E-35 278.8 29.0 289 30-330 32-330 (330)
42 1xku_A Decorin; proteoglycan, 100.0 3.7E-31 1.3E-35 278.3 29.1 287 78-376 32-328 (330)
43 2ft3_A Biglycan; proteoglycan, 100.0 2E-31 6.7E-36 280.5 26.7 288 30-330 34-331 (332)
44 2ft3_A Biglycan; proteoglycan, 100.0 4.3E-31 1.5E-35 277.9 25.7 286 79-377 35-330 (332)
45 1ogq_A PGIP-2, polygalacturona 100.0 3.6E-32 1.2E-36 282.9 15.4 247 104-354 52-302 (313)
46 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-31 4.5E-36 278.6 17.0 248 126-377 50-301 (313)
47 1z7x_W Ribonuclease inhibitor; 100.0 6.4E-35 2.2E-39 322.7 -11.5 355 5-380 3-411 (461)
48 1z7x_W Ribonuclease inhibitor; 100.0 6.8E-35 2.3E-39 322.6 -14.4 330 3-332 26-411 (461)
49 2z80_A TOLL-like receptor 2, v 100.0 7.3E-29 2.5E-33 263.3 19.0 284 27-334 29-316 (353)
50 2z80_A TOLL-like receptor 2, v 100.0 8.1E-29 2.8E-33 262.9 17.9 283 51-360 29-318 (353)
51 2z66_A Variable lymphocyte rec 100.0 2.1E-28 7.3E-33 254.3 18.3 281 33-319 11-298 (306)
52 2z66_A Variable lymphocyte rec 100.0 5.3E-28 1.8E-32 251.4 20.7 229 29-260 28-261 (306)
53 3zyi_A Leucine-rich repeat-con 100.0 5.1E-27 1.7E-31 257.8 25.5 249 79-357 56-304 (452)
54 3zyj_A Leucine-rich repeat-con 100.0 4.8E-27 1.7E-31 257.0 25.0 248 79-356 45-292 (440)
55 4fcg_A Uncharacterized protein 100.0 1.9E-27 6.7E-32 248.5 20.7 225 101-331 80-313 (328)
56 3ogk_B Coronatine-insensitive 100.0 4.9E-30 1.7E-34 293.1 0.4 408 144-574 67-527 (592)
57 1ozn_A Reticulon 4 receptor; N 100.0 1.2E-27 4.2E-32 245.7 18.3 225 8-236 14-239 (285)
58 1ozn_A Reticulon 4 receptor; N 100.0 1.1E-27 3.6E-32 246.2 17.5 225 80-309 14-239 (285)
59 3zyi_A Leucine-rich repeat-con 99.9 1.4E-26 4.9E-31 254.2 26.8 248 128-381 56-304 (452)
60 3ogk_B Coronatine-insensitive 99.9 2.3E-30 7.7E-35 295.9 -4.4 434 20-474 64-548 (592)
61 3zyj_A Leucine-rich repeat-con 99.9 2E-26 6.7E-31 252.2 26.7 248 128-381 45-293 (440)
62 4fcg_A Uncharacterized protein 99.9 4.3E-27 1.5E-31 245.9 20.0 232 125-377 80-311 (328)
63 3o53_A Protein LRIM1, AGAP0063 99.9 3E-28 1E-32 254.0 4.6 258 54-327 11-270 (317)
64 3o53_A Protein LRIM1, AGAP0063 99.9 9E-28 3.1E-32 250.4 8.2 258 79-351 12-270 (317)
65 1wwl_A Monocyte differentiatio 99.9 3.7E-28 1.3E-32 252.7 4.9 248 74-332 40-309 (312)
66 1wwl_A Monocyte differentiatio 99.9 4.4E-28 1.5E-32 252.2 3.0 253 48-310 38-311 (312)
67 3g06_A SSPH2 (leucine-rich rep 99.9 1.3E-24 4.4E-29 244.1 27.2 264 31-340 42-305 (622)
68 3g06_A SSPH2 (leucine-rich rep 99.9 2.7E-24 9.2E-29 241.6 28.5 267 54-366 41-307 (622)
69 3oja_A Leucine-rich immune mol 99.9 5E-26 1.7E-30 251.0 10.8 235 77-327 34-270 (487)
70 2p1m_B Transport inhibitor res 99.9 1.5E-28 5.1E-33 281.0 -10.2 443 8-474 46-541 (594)
71 3oja_A Leucine-rich immune mol 99.9 8.3E-26 2.8E-30 249.2 9.9 236 101-350 33-269 (487)
72 2p1m_B Transport inhibitor res 99.9 1.2E-27 4.2E-32 273.4 -7.2 174 129-303 46-243 (594)
73 2z62_A TOLL-like receptor 4, v 99.9 8.9E-24 3E-28 215.8 20.8 205 30-261 29-238 (276)
74 2z62_A TOLL-like receptor 4, v 99.9 1.1E-23 3.9E-28 215.0 21.5 204 103-308 29-237 (276)
75 2o6q_A Variable lymphocyte rec 99.9 5.2E-23 1.8E-27 209.1 23.9 204 30-237 17-220 (270)
76 2o6q_A Variable lymphocyte rec 99.9 6E-23 2.1E-27 208.6 24.1 203 6-212 17-219 (270)
77 3rfs_A Internalin B, repeat mo 99.9 1.5E-23 5.3E-28 213.1 18.9 205 25-241 37-241 (272)
78 3rfs_A Internalin B, repeat mo 99.9 5E-24 1.7E-28 216.7 12.3 227 31-272 21-247 (272)
79 1p9a_G Platelet glycoprotein I 99.9 2E-22 6.9E-27 206.3 21.1 203 25-235 6-208 (290)
80 1p9a_G Platelet glycoprotein I 99.9 4.3E-22 1.5E-26 203.9 21.9 202 49-259 6-207 (290)
81 3goz_A Leucine-rich repeat-con 99.9 1.8E-23 6.3E-28 222.2 4.6 252 58-310 3-299 (362)
82 2xwt_C Thyrotropin receptor; s 99.9 2.9E-22 1E-26 199.6 12.4 198 29-233 31-237 (239)
83 2ca6_A RAN GTPase-activating p 99.9 6.6E-24 2.3E-28 228.1 -0.2 187 147-333 91-317 (386)
84 4glp_A Monocyte differentiatio 99.9 2.3E-22 8E-27 208.8 11.1 83 245-332 222-307 (310)
85 2ast_B S-phase kinase-associat 99.9 4.3E-23 1.5E-27 217.5 5.6 252 79-340 49-314 (336)
86 3goz_A Leucine-rich repeat-con 99.9 2.7E-23 9.2E-28 220.9 3.7 259 81-360 2-301 (362)
87 2xwt_C Thyrotropin receptor; s 99.9 4E-21 1.4E-25 191.4 18.7 196 151-353 32-236 (239)
88 3m19_A Variable lymphocyte rec 99.9 8.7E-21 3E-25 190.3 21.2 180 6-189 15-194 (251)
89 2ast_B S-phase kinase-associat 99.9 4.1E-23 1.4E-27 217.7 4.3 224 102-329 47-282 (336)
90 2ca6_A RAN GTPase-activating p 99.9 8.2E-24 2.8E-28 227.3 -1.7 239 121-359 27-319 (386)
91 1h6u_A Internalin H; cell adhe 99.9 2.7E-21 9.2E-26 200.1 17.2 194 26-261 38-231 (308)
92 4glp_A Monocyte differentiatio 99.9 6.4E-22 2.2E-26 205.5 12.0 223 6-235 65-307 (310)
93 1h6u_A Internalin H; cell adhe 99.9 4.7E-21 1.6E-25 198.3 17.4 192 3-211 39-230 (308)
94 3m19_A Variable lymphocyte rec 99.8 2.7E-20 9.1E-25 186.8 20.2 179 30-212 15-193 (251)
95 4ay9_X Follicle-stimulating ho 99.8 1.8E-20 6.2E-25 197.9 17.9 200 32-235 12-215 (350)
96 2o6s_A Variable lymphocyte rec 99.8 9.6E-20 3.3E-24 177.1 17.5 179 9-222 11-189 (208)
97 2o6s_A Variable lymphocyte rec 99.8 1.4E-19 4.9E-24 175.9 17.7 163 77-248 28-190 (208)
98 4ay9_X Follicle-stimulating ho 99.8 1.7E-19 5.8E-24 190.5 19.4 241 80-353 12-256 (350)
99 3cvr_A Invasion plasmid antige 99.8 2.1E-18 7.1E-23 191.3 17.4 186 127-365 60-252 (571)
100 2v9t_B SLIT homolog 2 protein 99.8 4E-18 1.4E-22 166.7 17.0 152 8-163 14-165 (220)
101 3cvr_A Invasion plasmid antige 99.8 5E-18 1.7E-22 188.2 19.8 186 30-245 60-252 (571)
102 1h6t_A Internalin B; cell adhe 99.8 2E-18 6.9E-23 176.8 15.3 171 26-235 43-213 (291)
103 1h6t_A Internalin B; cell adhe 99.8 2.7E-18 9.3E-23 175.8 15.5 171 3-188 44-214 (291)
104 4fdw_A Leucine rich hypothetic 99.8 5.2E-17 1.8E-21 173.2 25.3 264 29-307 113-382 (401)
105 1m9s_A Internalin B; cell inva 99.8 6.5E-19 2.2E-23 197.7 10.0 183 11-210 27-209 (605)
106 2v70_A SLIT-2, SLIT homolog 2 99.8 9.4E-18 3.2E-22 164.1 16.5 155 202-359 15-169 (220)
107 3sb4_A Hypothetical leucine ri 99.8 3.4E-19 1.2E-23 186.5 6.3 285 28-325 24-327 (329)
108 2v70_A SLIT-2, SLIT homolog 2 99.8 9E-18 3.1E-22 164.2 15.6 154 81-238 15-169 (220)
109 2xot_A Amphoterin-induced prot 99.8 3.7E-18 1.3E-22 180.9 13.5 177 32-212 21-203 (361)
110 3sb4_A Hypothetical leucine ri 99.8 4.4E-19 1.5E-23 185.7 6.0 287 4-302 24-328 (329)
111 2v9t_B SLIT homolog 2 protein 99.7 1.5E-17 5E-22 162.7 16.0 152 80-235 14-165 (220)
112 2xot_A Amphoterin-induced prot 99.7 9.4E-18 3.2E-22 177.8 15.5 176 56-235 21-202 (361)
113 4fdw_A Leucine rich hypothetic 99.7 1.7E-16 5.7E-21 169.3 23.8 270 49-332 109-383 (401)
114 1m9s_A Internalin B; cell inva 99.7 1.7E-17 5.8E-22 186.2 16.4 176 3-193 41-216 (605)
115 4fs7_A Uncharacterized protein 99.7 1.7E-16 5.7E-21 170.4 23.4 335 17-372 59-393 (394)
116 3e6j_A Variable lymphocyte rec 99.7 4.7E-17 1.6E-21 160.3 17.6 153 31-188 21-173 (229)
117 3e6j_A Variable lymphocyte rec 99.7 6.5E-17 2.2E-21 159.2 18.3 155 7-166 21-175 (229)
118 1xeu_A Internalin C; cellular 99.7 5.1E-18 1.7E-22 170.9 8.5 168 5-188 19-186 (263)
119 4fs7_A Uncharacterized protein 99.7 3.3E-16 1.1E-20 168.2 22.1 319 40-377 58-376 (394)
120 4ezg_A Putative uncharacterize 99.7 3.4E-17 1.1E-21 157.4 11.7 154 25-187 40-194 (197)
121 4ezg_A Putative uncharacterize 99.7 6.5E-17 2.2E-21 155.4 13.5 152 196-356 42-194 (197)
122 1dce_A Protein (RAB geranylger 99.7 8.3E-20 2.9E-24 203.8 -10.5 105 224-334 443-548 (567)
123 1xeu_A Internalin C; cellular 99.7 1.4E-16 4.8E-21 160.3 11.6 150 2-165 38-187 (263)
124 4b8c_D Glucose-repressible alc 99.7 4.3E-17 1.5E-21 187.9 8.7 161 472-643 209-369 (727)
125 1dce_A Protein (RAB geranylger 99.6 6.3E-18 2.1E-22 188.7 -1.9 195 462-663 347-566 (567)
126 4b8c_D Glucose-repressible alc 99.6 5.9E-17 2E-21 186.7 3.5 120 70-194 217-336 (727)
127 1w8a_A SLIT protein; signaling 99.6 3.1E-15 1.1E-19 142.7 13.2 112 248-359 30-142 (192)
128 1w8a_A SLIT protein; signaling 99.6 4.3E-15 1.5E-19 141.7 14.1 111 78-188 30-140 (192)
129 2ell_A Acidic leucine-rich nuc 99.6 1.3E-15 4.5E-20 142.1 9.6 133 28-163 23-160 (168)
130 4gt6_A Cell surface protein; l 99.6 9.5E-14 3.3E-18 148.9 24.8 323 17-355 51-390 (394)
131 2ell_A Acidic leucine-rich nuc 99.6 4.4E-15 1.5E-19 138.5 10.9 132 102-235 24-160 (168)
132 2je0_A Acidic leucine-rich nuc 99.6 2.4E-15 8.3E-20 137.2 8.6 127 29-158 17-148 (149)
133 2wfh_A SLIT homolog 2 protein 99.6 3.3E-14 1.1E-18 135.5 14.7 127 32-163 13-139 (193)
134 2o6r_A Variable lymphocyte rec 99.6 3.6E-14 1.2E-18 133.6 14.8 130 32-165 10-139 (177)
135 4gt6_A Cell surface protein; l 99.6 2.9E-13 9.8E-18 145.2 23.7 322 41-378 51-389 (394)
136 2o6r_A Variable lymphocyte rec 99.6 4.5E-14 1.5E-18 132.9 14.7 128 56-187 10-137 (177)
137 2je0_A Acidic leucine-rich nuc 99.5 7.1E-15 2.4E-19 134.1 8.5 126 102-229 17-147 (149)
138 2wfh_A SLIT homolog 2 protein 99.5 5.4E-14 1.8E-18 134.0 14.5 127 56-187 13-139 (193)
139 1a9n_A U2A', U2A'; complex (nu 99.5 2.7E-14 9.1E-19 134.3 7.9 133 24-163 14-153 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.5 4.5E-14 1.5E-18 132.7 8.9 134 48-187 14-153 (176)
141 4h09_A Hypothetical leucine ri 99.4 2.8E-11 9.5E-16 129.1 25.1 304 25-344 42-357 (379)
142 1ds9_A Outer arm dynein; leuci 99.4 4.9E-15 1.7E-19 142.3 -4.1 132 459-597 43-185 (198)
143 1ds9_A Outer arm dynein; leuci 99.4 5.5E-15 1.9E-19 141.9 -3.9 156 484-671 14-186 (198)
144 4h09_A Hypothetical leucine ri 99.4 5.4E-11 1.9E-15 126.8 25.1 303 48-366 41-355 (379)
145 3g39_A Variable lymphocyte rec 99.4 4.6E-12 1.6E-16 117.9 13.0 104 32-139 12-115 (170)
146 3g39_A Variable lymphocyte rec 99.4 4.4E-12 1.5E-16 118.0 12.7 104 8-115 12-115 (170)
147 2r9u_A Variable lymphocyte rec 99.3 7.8E-12 2.7E-16 116.7 12.6 104 32-139 15-118 (174)
148 2r9u_A Variable lymphocyte rec 99.3 9.7E-12 3.3E-16 116.0 13.1 107 7-117 14-120 (174)
149 3un9_A NLR family member X1; l 99.2 2.6E-13 8.9E-18 143.2 -4.6 135 102-236 101-253 (372)
150 3un9_A NLR family member X1; l 99.2 5.7E-13 2E-17 140.5 -4.7 159 77-235 101-283 (372)
151 2ifg_A High affinity nerve gro 99.1 4.4E-10 1.5E-14 118.2 11.4 65 244-308 28-93 (347)
152 2ifg_A High affinity nerve gro 99.1 3.8E-10 1.3E-14 118.7 10.8 102 10-115 13-116 (347)
153 4gt4_A Tyrosine-protein kinase 99.0 2.8E-11 9.7E-16 123.5 0.7 82 670-763 216-304 (308)
154 3omv_A RAF proto-oncogene seri 99.0 3.4E-11 1.2E-15 122.3 0.5 88 676-767 212-302 (307)
155 3hmm_A TGF-beta receptor type- 99.0 4.5E-11 1.5E-15 122.3 1.0 89 677-766 194-298 (303)
156 4aoj_A High affinity nerve gro 99.0 6.3E-11 2.1E-15 122.2 1.0 85 670-766 229-320 (329)
157 4asz_A BDNF/NT-3 growth factor 99.0 5.9E-11 2E-15 120.5 0.6 86 670-767 199-291 (299)
158 4ase_A Vascular endothelial gr 98.8 3.7E-10 1.3E-14 117.4 -0.0 90 670-766 256-348 (353)
159 3uim_A Brassinosteroid insensi 98.8 2.2E-09 7.7E-14 111.7 4.8 94 670-765 204-311 (326)
160 2ra8_A Uncharacterized protein 98.7 3.3E-09 1.1E-13 110.7 3.3 84 245-330 250-341 (362)
161 2ra8_A Uncharacterized protein 98.7 4.2E-09 1.4E-13 109.8 3.8 84 269-354 250-341 (362)
162 2qkw_B Protein kinase; three-h 98.7 6.2E-09 2.1E-13 108.1 4.4 94 670-765 210-315 (321)
163 2nru_A Interleukin-1 receptor- 98.6 2E-08 7E-13 103.3 4.0 86 677-765 210-306 (307)
164 3gxj_A TGF-beta receptor type- 98.4 6.8E-08 2.3E-12 99.2 2.9 91 677-767 194-299 (303)
165 3s95_A LIMK-1, LIM domain kina 98.4 6.6E-08 2.2E-12 99.7 2.0 95 670-770 191-287 (310)
166 2eva_A TAK1 kinase - TAB1 chim 98.4 1.4E-07 4.8E-12 96.9 4.3 87 670-767 172-265 (307)
167 3soc_A Activin receptor type-2 98.4 3.9E-08 1.3E-12 102.0 0.1 90 676-766 213-319 (322)
168 3poz_A Epidermal growth factor 98.4 4.6E-08 1.6E-12 101.7 0.6 89 670-764 188-277 (327)
169 3uzp_A CKI-delta, CKID, casein 98.4 1.8E-08 6.2E-13 103.1 -2.6 101 670-770 184-285 (296)
170 3p86_A Serine/threonine-protei 98.4 8.4E-08 2.9E-12 98.7 2.2 91 670-771 208-304 (309)
171 3op5_A Serine/threonine-protei 98.4 3E-08 1E-12 104.8 -1.7 93 670-767 230-331 (364)
172 3lxp_A Non-receptor tyrosine-p 98.3 2.6E-08 8.9E-13 103.1 -2.4 100 670-771 206-316 (318)
173 4g3f_A NF-kappa-beta-inducing 98.3 1.8E-07 6.2E-12 95.9 3.9 87 670-765 225-316 (336)
174 3cbl_A C-FES, proto-oncogene t 98.3 6.2E-08 2.1E-12 102.8 0.3 89 670-766 284-375 (377)
175 4hgt_A Casein kinase I isoform 98.3 3E-08 1E-12 101.5 -2.3 99 670-768 184-283 (296)
176 2qol_A Ephrin receptor; recept 98.3 4.1E-08 1.4E-12 103.9 -1.7 90 670-765 219-309 (373)
177 3ugc_A Tyrosine-protein kinase 98.3 6E-08 2.1E-12 99.1 -0.7 96 670-767 186-293 (295)
178 1csn_A Casein kinase-1; phosph 98.3 2.3E-08 7.8E-13 102.5 -4.0 101 670-770 187-288 (298)
179 1qcf_A Haematopoetic cell kina 98.3 1.2E-07 4.2E-12 103.2 1.1 86 670-767 354-446 (454)
180 3q4u_A Activin receptor type-1 98.3 2.3E-07 7.9E-12 95.0 3.1 84 677-763 199-300 (301)
181 3lb7_A RAF proto-oncogene seri 98.3 1.8E-07 6.1E-12 96.2 2.0 91 675-768 211-303 (307)
182 3dtc_A Mitogen-activated prote 98.3 3.1E-07 1.1E-11 92.5 3.2 88 670-763 183-271 (271)
183 3g2f_A Bone morphogenetic prot 98.3 2.3E-07 8E-12 96.7 2.2 95 676-770 210-323 (336)
184 3sxs_A Cytoplasmic tyrosine-pr 98.2 2.8E-07 9.5E-12 92.7 2.5 88 670-766 174-265 (268)
185 3fpq_A Serine/threonine-protei 98.2 3.8E-07 1.3E-11 91.7 3.4 72 676-758 204-282 (290)
186 1b6c_B TGF-B superfamily recep 98.2 2.3E-07 8E-12 97.0 1.8 87 677-766 233-337 (342)
187 3rw6_A Nuclear RNA export fact 98.2 3.3E-07 1.1E-11 90.3 2.6 64 509-574 167-234 (267)
188 1fmk_A C-SRC, P60-SRC, tyrosin 98.2 2.3E-07 7.9E-12 100.9 1.6 89 670-770 350-445 (452)
189 2v62_A Serine/threonine-protei 98.2 1.2E-07 4.1E-12 99.3 -0.7 92 670-766 229-329 (345)
190 2jii_A Serine/threonine-protei 98.2 1.5E-07 5.2E-12 98.9 0.0 94 670-768 237-339 (352)
191 3kul_A Ephrin type-A receptor 98.2 1.9E-07 6.4E-12 96.9 0.7 85 670-766 223-314 (325)
192 2y4i_B KSR2, HKSR2, kinase sup 98.2 3.4E-07 1.2E-11 94.7 2.5 87 676-767 218-304 (319)
193 1io0_A Tropomodulin; LRR prote 98.2 2.2E-07 7.5E-12 87.2 0.8 118 22-139 29-164 (185)
194 4hcu_A Tyrosine-protein kinase 98.2 3.1E-07 1.1E-11 92.4 1.8 91 670-766 176-267 (269)
195 3kmu_A ILK, integrin-linked ki 98.2 3.8E-07 1.3E-11 91.8 2.4 81 679-765 189-270 (271)
196 2wqm_A Serine/threonine-protei 98.2 4.8E-07 1.7E-11 93.1 3.1 94 670-771 205-303 (310)
197 1byg_A CSK, protein (C-termina 98.2 4.2E-07 1.4E-11 91.9 2.5 91 670-766 183-274 (278)
198 3og7_A AKAP9-BRAF fusion prote 98.2 5.8E-07 2E-11 91.5 3.4 83 675-765 199-288 (289)
199 2w1i_A JAK2; chromosomal rearr 98.2 1.8E-07 6E-12 97.2 -0.6 93 670-766 217-323 (326)
200 1k9a_A Carboxyl-terminal SRC k 98.2 2.4E-07 8.2E-12 100.7 0.5 90 670-766 355-446 (450)
201 3tt0_A Basic fibroblast growth 98.2 3.9E-07 1.3E-11 96.8 2.1 87 670-768 262-355 (382)
202 3kex_A Receptor tyrosine-prote 98.2 6.1E-07 2.1E-11 93.0 3.3 83 670-764 186-275 (325)
203 2buj_A Serine/threonine-protei 98.2 2.6E-07 8.7E-12 95.5 0.4 87 677-768 222-309 (317)
204 2ozo_A Tyrosine-protein kinase 98.2 3.9E-07 1.3E-11 102.8 1.9 86 670-767 508-600 (613)
205 3cc6_A Protein tyrosine kinase 98.2 4.3E-07 1.5E-11 92.0 2.0 89 670-765 183-273 (281)
206 3t9t_A Tyrosine-protein kinase 98.2 4.1E-07 1.4E-11 91.3 1.8 85 670-766 174-265 (267)
207 3ll6_A Cyclin G-associated kin 98.2 2.1E-07 7.2E-12 97.1 -0.4 87 675-771 227-314 (337)
208 3f66_A Hepatocyte growth facto 98.2 5E-07 1.7E-11 92.4 2.4 95 670-770 201-296 (298)
209 3lxl_A Tyrosine-protein kinase 98.2 1.6E-07 5.6E-12 97.5 -1.4 95 670-766 199-304 (327)
210 3mdy_A Bone morphogenetic prot 98.2 6.3E-07 2.1E-11 93.5 3.0 86 680-766 231-332 (337)
211 1xbb_A Tyrosine-protein kinase 98.2 5.6E-07 1.9E-11 91.7 2.5 83 670-764 189-278 (291)
212 1io0_A Tropomodulin; LRR prote 98.2 3.8E-07 1.3E-11 85.6 1.1 43 555-597 116-164 (185)
213 3vhe_A Vascular endothelial gr 98.2 3.9E-07 1.3E-11 96.0 1.3 88 670-765 264-355 (359)
214 3sv0_A Casein kinase I-like; t 98.2 1.3E-07 4.5E-12 103.1 -2.5 96 670-765 182-278 (483)
215 3c1x_A Hepatocyte growth facto 98.1 6.1E-07 2.1E-11 94.7 2.7 95 670-771 265-361 (373)
216 1luf_A Muscle-specific tyrosin 98.1 3.7E-07 1.3E-11 95.5 0.8 93 670-768 245-338 (343)
217 1qpc_A LCK kinase; alpha beta 98.1 4.8E-07 1.7E-11 91.5 1.6 86 670-767 179-271 (279)
218 3pls_A Macrophage-stimulating 98.1 5.9E-07 2E-11 91.8 2.2 94 671-770 198-292 (298)
219 2psq_A Fibroblast growth facto 98.1 6.4E-07 2.2E-11 94.6 2.5 91 670-766 274-365 (370)
220 4f0f_A Serine/threonine-protei 98.1 7.7E-07 2.6E-11 90.4 3.0 82 676-763 203-287 (287)
221 3l9p_A Anaplastic lymphoma kin 98.1 3.7E-07 1.3E-11 96.4 0.5 84 670-765 255-345 (367)
222 4fvq_A Tyrosine-protein kinase 98.1 8.2E-07 2.8E-11 90.3 3.1 88 671-766 187-276 (289)
223 3rw6_A Nuclear RNA export fact 98.1 4.1E-07 1.4E-11 89.6 0.7 80 485-566 167-257 (267)
224 3lzb_A Epidermal growth factor 98.1 6.7E-07 2.3E-11 92.8 2.3 88 670-764 188-277 (327)
225 1opk_A P150, C-ABL, proto-onco 98.1 7.2E-07 2.5E-11 98.1 2.7 88 670-765 388-478 (495)
226 1u46_A ACK-1, activated CDC42 98.1 9.2E-07 3.1E-11 90.0 3.3 86 670-766 193-285 (291)
227 1mqb_A Ephrin type-A receptor 98.1 7.8E-07 2.7E-11 92.5 2.7 89 670-765 219-309 (333)
228 2izr_A Casein kinase I isoform 98.1 1.3E-07 4.6E-12 98.3 -3.2 96 670-765 186-281 (330)
229 3gen_A Tyrosine-protein kinase 98.1 7.2E-07 2.5E-11 90.4 2.1 90 670-765 190-280 (283)
230 2a19_B Interferon-induced, dou 98.1 5.8E-07 2E-11 91.1 1.4 89 670-769 190-278 (284)
231 2ivs_A Proto-oncogene tyrosine 98.1 7.5E-07 2.6E-11 91.8 2.2 89 670-765 221-311 (314)
232 1t46_A HOMO sapiens V-KIT hard 98.1 6.7E-07 2.3E-11 92.2 1.7 91 670-766 216-308 (313)
233 2h8h_A Proto-oncogene tyrosine 98.1 5.7E-07 2E-11 99.9 1.3 89 670-770 433-528 (535)
234 3brb_A Proto-oncogene tyrosine 98.1 7.7E-07 2.6E-11 91.7 2.1 90 671-766 219-309 (313)
235 1mp8_A Focal adhesion kinase 1 98.1 7.9E-07 2.7E-11 90.0 2.1 90 670-765 186-276 (281)
236 1u59_A Tyrosine-protein kinase 98.1 7.5E-07 2.6E-11 90.5 1.8 86 670-767 182-274 (287)
237 3qup_A Tyrosine-protein kinase 98.1 1.1E-06 3.7E-11 91.1 2.7 90 671-766 209-299 (323)
238 1fvr_A Tyrosine-protein kinase 98.1 1.1E-06 3.7E-11 91.2 2.5 92 670-767 210-302 (327)
239 2i1m_A Macrophage colony-stimu 98.1 8.1E-07 2.8E-11 92.5 1.3 89 670-765 235-326 (333)
240 2c30_A Serine/threonine-protei 98.1 8E-07 2.7E-11 91.9 1.2 85 670-758 210-294 (321)
241 2pvf_A Fibroblast growth facto 98.0 9.7E-07 3.3E-11 91.9 1.6 85 670-766 228-319 (334)
242 4fl3_A Tyrosine-protein kinase 98.0 9.1E-07 3.1E-11 100.2 1.5 88 670-765 541-631 (635)
243 3dbq_A Dual specificity protei 98.0 3.9E-07 1.3E-11 95.3 -1.5 78 676-758 195-273 (343)
244 2zmd_A Dual specificity protei 98.0 5.5E-07 1.9E-11 95.8 -0.4 78 676-758 242-320 (390)
245 2h34_A Serine/threonine-protei 98.0 2.7E-06 9.4E-11 87.3 4.6 86 671-766 205-297 (309)
246 3kfa_A Tyrosine-protein kinase 98.0 1.4E-06 4.9E-11 88.4 2.4 89 670-765 181-271 (288)
247 1rjb_A FL cytokine receptor; k 98.0 1.2E-06 4.2E-11 91.6 1.9 91 670-766 243-335 (344)
248 2xir_A Vascular endothelial gr 98.0 1.1E-06 3.7E-11 90.7 1.4 91 670-766 219-311 (316)
249 4e5w_A Tyrosine-protein kinase 98.0 9.3E-07 3.2E-11 90.5 0.6 91 670-763 198-300 (302)
250 2yfx_A Tyrosine-protein kinase 98.0 1.5E-06 5.1E-11 90.2 1.8 84 670-765 214-304 (327)
251 3m2w_A MAP kinase-activated pr 98.0 1.7E-06 5.9E-11 88.4 1.7 90 674-763 171-263 (299)
252 3cok_A Serine/threonine-protei 98.0 1.3E-06 4.3E-11 88.4 0.4 81 671-758 182-262 (278)
253 4b9d_A Serine/threonine-protei 97.9 1.1E-06 3.7E-11 90.5 -0.2 83 670-758 194-276 (350)
254 1p4o_A Insulin-like growth fac 97.9 1.4E-06 4.8E-11 90.2 0.6 90 670-765 209-299 (322)
255 2w4o_A Calcium/calmodulin-depe 97.9 1.3E-06 4.4E-11 91.4 -0.2 87 670-758 219-305 (349)
256 3uqc_A Probable conserved tran 97.9 1E-06 3.5E-11 89.3 -1.0 89 677-766 178-266 (286)
257 4fih_A Serine/threonine-protei 97.9 1.8E-06 6E-11 88.8 0.7 85 670-758 239-323 (346)
258 4euu_A Serine/threonine-protei 97.9 6.3E-06 2.2E-10 85.0 4.9 89 675-763 197-307 (319)
259 3q60_A ROP5B; pseudokinase, tr 97.9 2E-06 6.7E-11 91.0 0.9 86 670-758 260-352 (371)
260 3cek_A Dual specificity protei 97.9 9.1E-07 3.1E-11 91.2 -1.7 78 676-758 214-292 (313)
261 3byv_A Rhoptry kinase; malaria 97.9 3E-06 1E-10 89.7 2.3 76 677-763 289-366 (377)
262 4eqm_A Protein kinase; transfe 97.9 6.4E-06 2.2E-10 83.8 4.4 90 670-766 181-276 (294)
263 3bhy_A Death-associated protei 97.9 1.6E-06 5.4E-11 87.9 -0.4 94 670-766 180-275 (283)
264 3fxz_A Serine/threonine-protei 97.9 2.1E-06 7.3E-11 87.6 0.4 85 670-758 185-269 (297)
265 2w5a_A Serine/threonine-protei 97.9 2.2E-06 7.6E-11 86.6 0.5 84 671-760 186-269 (279)
266 1tki_A Titin; serine kinase, m 97.9 1.4E-06 4.9E-11 89.9 -1.0 86 670-758 172-257 (321)
267 4eut_A Serine/threonine-protei 97.9 5.6E-06 1.9E-10 88.3 3.6 90 676-765 198-309 (396)
268 3hko_A Calcium/calmodulin-depe 97.9 2.2E-06 7.4E-11 89.7 0.3 80 676-758 251-330 (345)
269 3p1a_A MYT1 kinase, membrane-a 97.8 4.9E-06 1.7E-10 85.5 2.7 72 677-758 231-304 (311)
270 3a7i_A MST3 kinase, serine/thr 97.8 2.6E-06 9E-11 87.2 0.5 84 670-759 188-271 (303)
271 3fhr_A MAP kinase-activated pr 97.8 2.1E-06 7.1E-11 89.4 -0.4 92 671-762 199-293 (336)
272 3fme_A Dual specificity mitoge 97.8 1E-06 3.5E-11 89.6 -2.8 79 675-758 187-266 (290)
273 3aln_A Dual specificity mitoge 97.8 2.2E-06 7.7E-11 88.8 -0.3 79 675-758 203-285 (327)
274 2vx3_A Dual specificity tyrosi 97.8 5.3E-06 1.8E-10 88.0 2.6 33 670-702 227-259 (382)
275 3kk8_A Calcium/calmodulin depe 97.8 2.2E-06 7.6E-11 86.8 -0.5 80 670-758 176-261 (284)
276 3e4g_A ATP synthase subunit S, 97.8 2.2E-06 7.6E-11 78.0 -0.5 84 29-113 61-150 (176)
277 2vwi_A Serine/threonine-protei 97.8 6.8E-06 2.3E-10 84.0 2.9 77 676-758 202-287 (303)
278 2y0a_A Death-associated protei 97.8 2.1E-06 7.3E-11 88.8 -0.9 86 670-758 186-271 (326)
279 3lm5_A Serine/threonine-protei 97.8 2E-06 6.8E-11 89.2 -1.4 86 670-758 202-287 (327)
280 1t4h_A Serine/threonine-protei 97.8 6.8E-06 2.3E-10 83.5 2.7 72 676-758 204-282 (290)
281 2x4f_A Myosin light chain kina 97.8 3.1E-06 1E-10 89.4 -0.0 86 670-758 257-342 (373)
282 3dzo_A Rhoptry kinase domain; 97.8 8.6E-06 2.9E-10 87.3 3.5 74 674-758 290-363 (413)
283 3an0_A Dual specificity mitoge 97.8 1.4E-06 4.8E-11 91.0 -2.7 78 676-758 232-310 (340)
284 3kn6_A Ribosomal protein S6 ki 97.8 1.3E-06 4.4E-11 90.5 -2.9 88 671-758 179-270 (325)
285 3fdn_A Serine/threonine-protei 97.8 2E-06 6.7E-11 87.0 -1.6 80 670-758 176-257 (279)
286 3hyh_A Carbon catabolite-derep 97.8 1.6E-06 5.4E-11 86.4 -2.3 81 671-758 181-262 (275)
287 3is5_A Calcium-dependent prote 97.8 7.2E-06 2.5E-10 83.1 2.4 77 676-758 200-278 (285)
288 2a2a_A Death-associated protei 97.8 4E-06 1.4E-10 86.6 0.4 86 670-758 187-272 (321)
289 1nxk_A MAP kinase-activated pr 97.8 4.5E-06 1.5E-10 89.1 0.8 88 671-758 233-321 (400)
290 2j0j_A Focal adhesion kinase 1 97.8 5.8E-06 2E-10 93.9 1.7 84 670-765 561-651 (656)
291 3e4g_A ATP synthase subunit S, 97.8 1.1E-05 3.9E-10 73.3 3.2 82 151-232 62-149 (176)
292 1q8y_A SR protein kinase; tran 97.8 2.6E-06 9E-11 90.1 -1.2 33 670-702 204-236 (373)
293 3g33_A Cell division protein k 97.7 5.8E-06 2E-10 84.8 1.1 89 670-758 188-296 (308)
294 1wak_A Serine/threonine-protei 97.7 1.7E-05 5.8E-10 84.6 4.8 33 670-702 262-294 (397)
295 3h4j_B AMPK kdaid, SNF1-like p 97.7 5.4E-06 1.9E-10 85.9 0.8 73 679-758 186-258 (336)
296 3dls_A PAS domain-containing s 97.7 1.1E-05 3.9E-10 83.6 3.2 75 671-758 199-274 (335)
297 3ork_A Serine/threonine protei 97.7 9.3E-06 3.2E-10 83.4 2.5 93 670-765 188-281 (311)
298 4fie_A Serine/threonine-protei 97.7 6.3E-06 2.2E-10 87.0 1.1 85 670-758 316-400 (423)
299 3com_A Serine/threonine-protei 97.7 5.8E-06 2E-10 85.1 0.8 84 671-758 195-278 (314)
300 2eu9_A Dual specificity protei 97.7 1.2E-05 4E-10 84.3 3.2 33 670-702 208-240 (355)
301 3c0i_A Peripheral plasma membr 97.7 3.9E-06 1.3E-10 87.9 -0.6 85 670-758 202-286 (351)
302 2ycf_A Serine/threonine-protei 97.7 4.5E-06 1.5E-10 86.3 -0.2 80 676-758 194-274 (322)
303 1u5q_A Serine/threonine protei 97.7 2.3E-06 7.9E-11 89.4 -2.4 77 675-759 227-306 (348)
304 2vgo_A Serine/threonine-protei 97.7 4.8E-06 1.7E-10 84.3 0.0 89 670-765 181-271 (284)
305 3llt_A Serine/threonine kinase 97.7 3.8E-06 1.3E-10 88.4 -0.8 33 670-702 228-260 (360)
306 3ubd_A Ribosomal protein S6 ki 97.7 2.3E-06 8E-11 86.4 -2.5 77 670-753 195-271 (304)
307 2clq_A Mitogen-activated prote 97.7 7.9E-06 2.7E-10 83.2 1.4 75 678-758 202-278 (295)
308 2dyl_A Dual specificity mitoge 97.7 1.1E-05 3.9E-10 83.0 2.6 78 675-758 203-283 (318)
309 2ac3_A MAP kinase-interacting 97.7 4.3E-06 1.5E-10 86.2 -0.8 83 676-758 201-295 (316)
310 3a99_A Proto-oncogene serine/t 97.7 5.4E-06 1.8E-10 85.6 -0.0 75 671-758 218-293 (320)
311 2yex_A Serine/threonine-protei 97.7 7.1E-06 2.4E-10 82.6 0.8 75 679-758 186-261 (276)
312 2rku_A Serine/threonine-protei 97.7 4.4E-06 1.5E-10 85.1 -0.7 82 670-758 184-265 (294)
313 2eue_A Carbon catabolite derep 97.7 2E-06 6.9E-11 86.6 -3.3 73 679-758 190-262 (275)
314 2qr7_A Ribosomal protein S6 ki 97.7 3.1E-06 1.1E-10 88.1 -2.0 86 670-758 189-277 (342)
315 3zgw_A Maternal embryonic leuc 97.7 2.9E-06 9.9E-11 88.4 -2.5 81 671-758 179-260 (347)
316 4agu_A Cyclin-dependent kinase 97.7 1E-05 3.5E-10 83.1 1.7 83 676-758 178-284 (311)
317 2rio_A Serine/threonine-protei 97.7 1.1E-05 3.7E-10 87.1 1.9 80 676-758 214-295 (434)
318 3kvw_A DYRK2, dual specificity 97.7 1.8E-05 6.3E-10 85.1 3.6 32 670-701 268-299 (429)
319 3i6u_A CDS1, serine/threonine- 97.7 6.1E-06 2.1E-10 88.6 -0.2 80 676-758 319-399 (419)
320 3o0g_A Cell division protein k 97.6 1.2E-05 4E-10 81.8 1.8 31 671-701 171-202 (292)
321 3soa_A Calcium/calmodulin-depe 97.6 8E-06 2.7E-10 88.1 0.5 80 670-758 182-267 (444)
322 2y7j_A Phosphorylase B kinase 97.6 6E-06 2E-10 86.9 -0.5 79 677-758 281-359 (365)
323 3f3z_A Calcium/calmodulin-depe 97.6 4.2E-06 1.4E-10 84.4 -1.7 79 677-758 183-261 (277)
324 2bdw_A Hypothetical protein K1 97.6 5.5E-06 1.9E-10 87.1 -0.9 86 670-758 199-284 (362)
325 2j7t_A Serine/threonine-protei 97.6 7.7E-06 2.6E-10 83.6 0.2 80 675-758 196-275 (302)
326 1z57_A Dual specificity protei 97.6 6.1E-06 2.1E-10 85.9 -0.6 33 670-702 203-235 (339)
327 3tki_A Serine/threonine-protei 97.6 8.8E-06 3E-10 84.0 0.4 75 679-758 186-261 (323)
328 3niz_A Rhodanese family protei 97.6 1E-05 3.5E-10 83.1 0.9 27 676-702 195-221 (311)
329 1kob_A Twitchin; kinase, intra 97.6 6.1E-06 2.1E-10 87.4 -0.8 80 670-758 219-304 (387)
330 3qd2_B Eukaryotic translation 97.6 6.3E-06 2.2E-10 85.5 -0.8 81 670-758 245-325 (332)
331 2wtk_C Serine/threonine-protei 97.6 4.2E-06 1.4E-10 85.8 -2.3 79 678-763 190-270 (305)
332 1blx_A Cyclin-dependent kinase 97.6 1.4E-05 4.9E-10 82.6 1.7 89 670-758 188-296 (326)
333 2h6d_A 5'-AMP-activated protei 97.6 4.3E-06 1.5E-10 84.3 -2.3 73 679-758 189-261 (276)
334 2jam_A Calcium/calmodulin-depe 97.6 6.3E-06 2.2E-10 84.4 -1.1 75 675-758 181-261 (304)
335 4aaa_A Cyclin-dependent kinase 97.6 1E-05 3.6E-10 83.9 0.5 82 677-758 201-306 (331)
336 3e3p_A Protein kinase, putativ 97.6 1.2E-05 3.9E-10 84.7 0.8 88 677-764 208-322 (360)
337 1x8b_A WEE1HU, WEE1-like prote 97.6 1E-05 3.4E-10 82.1 0.2 70 677-758 207-279 (289)
338 2iwi_A Serine/threonine-protei 97.6 1.6E-05 5.3E-10 81.8 1.5 75 671-758 208-283 (312)
339 2wei_A Calmodulin-domain prote 97.6 8.8E-06 3E-10 82.5 -0.4 79 677-758 198-276 (287)
340 2owb_A Serine/threonine-protei 97.6 7.6E-06 2.6E-10 85.1 -1.0 80 670-758 210-291 (335)
341 2yab_A Death-associated protei 97.6 9.5E-06 3.2E-10 85.0 -0.3 86 670-758 187-272 (361)
342 2x7f_A TRAF2 and NCK-interacti 97.6 1.4E-05 4.9E-10 82.6 1.0 79 675-758 208-286 (326)
343 3mtl_A Cell division protein k 97.6 8.5E-06 2.9E-10 84.2 -0.7 91 676-766 176-291 (324)
344 3fe3_A MAP/microtubule affinit 97.6 5.2E-06 1.8E-10 85.9 -2.5 81 671-758 183-264 (328)
345 2r3i_A Cell division protein k 97.5 4.8E-05 1.7E-09 77.5 4.7 81 678-758 181-283 (299)
346 1ob3_A PFPK5, cell division co 97.5 2E-05 6.9E-10 79.8 1.7 82 677-758 177-280 (288)
347 2zv2_A Calcium/calmodulin-depe 97.5 2.3E-05 7.9E-10 79.9 2.0 75 678-758 217-292 (298)
348 1phk_A Phosphorylase kinase; g 97.5 8.2E-06 2.8E-10 83.2 -1.3 80 676-758 204-283 (298)
349 3eqc_A Dual specificity mitoge 97.5 3.2E-05 1.1E-09 81.2 3.0 33 670-702 199-231 (360)
350 3gbz_A Kinase, CMGC CDK; ssgci 97.5 3.1E-05 1.1E-09 80.1 2.8 32 671-702 207-239 (329)
351 3p23_A Serine/threonine-protei 97.5 3.5E-05 1.2E-09 82.9 3.2 77 676-758 204-283 (432)
352 4g31_A Eukaryotic translation 97.5 1E-05 3.4E-10 82.1 -1.1 81 670-758 199-279 (299)
353 3gni_B Strad alpha; kinase fol 97.5 1.8E-05 6.3E-10 84.1 0.6 27 676-702 212-238 (389)
354 3nsz_A CK II alpha, casein kin 97.5 1.6E-05 5.4E-10 82.4 0.0 26 676-701 206-231 (330)
355 2xrw_A Mitogen-activated prote 97.5 5E-05 1.7E-09 80.1 3.8 33 670-702 195-227 (371)
356 4aw0_A HPDK1, 3-phosphoinositi 97.5 4.3E-06 1.5E-10 84.6 -4.3 80 670-756 203-282 (311)
357 2pmi_A Negative RE, cyclin-dep 97.4 3.7E-05 1.3E-09 79.1 2.2 26 677-702 185-210 (317)
358 3mi9_A Cell division protein k 97.4 5.4E-05 1.8E-09 79.2 3.5 82 677-758 205-311 (351)
359 3uc3_A Serine/threonine-protei 97.4 1.6E-05 5.4E-10 83.5 -0.8 85 671-758 187-274 (361)
360 4exu_A Mitogen-activated prote 97.4 1.7E-05 5.9E-10 83.6 -0.5 32 671-702 211-243 (371)
361 2pml_X PFPK7, Ser/Thr protein 97.4 1.5E-05 5E-10 83.4 -1.2 82 677-758 227-322 (348)
362 3ttj_A Mitogen-activated prote 97.4 8E-05 2.7E-09 80.9 3.6 33 670-702 232-264 (464)
363 2i6l_A Mitogen-activated prote 97.3 3E-05 1E-09 79.8 0.2 83 676-758 200-305 (320)
364 3pg1_A Mitogen-activated prote 97.3 5.9E-05 2E-09 79.2 2.5 83 676-758 209-316 (362)
365 3qa8_A MGC80376 protein; kinas 97.3 3.7E-05 1.2E-09 86.1 0.8 85 671-755 193-294 (676)
366 2y94_A 5'-AMP-activated protei 97.3 2.1E-05 7.3E-10 85.4 -1.1 78 678-762 193-272 (476)
367 1vzo_A Ribosomal protein S6 ki 97.3 1.3E-05 4.5E-10 83.9 -2.9 78 677-758 238-321 (355)
368 3coi_A Mitogen-activated prote 97.3 4.7E-05 1.6E-09 79.7 1.3 27 676-702 199-225 (353)
369 1j1b_A Glycogen synthase kinas 97.3 5.4E-05 1.8E-09 81.2 1.7 89 670-758 225-336 (420)
370 3qyz_A Mitogen-activated prote 97.3 0.0001 3.6E-09 77.4 3.7 26 677-702 208-233 (364)
371 3lij_A Calcium/calmodulin depe 97.3 3.4E-05 1.2E-09 84.8 -0.1 74 676-758 212-291 (494)
372 4ejn_A RAC-alpha serine/threon 97.3 2.2E-05 7.5E-10 85.1 -1.7 82 670-758 318-404 (446)
373 3mwu_A Calmodulin-domain prote 97.3 4E-05 1.4E-09 84.1 0.2 84 677-763 198-283 (486)
374 1zy4_A Serine/threonine-protei 97.3 2.8E-05 9.7E-10 79.3 -0.9 74 676-758 206-283 (303)
375 3nyv_A Calmodulin-domain prote 97.3 3.1E-05 1.1E-09 85.0 -0.7 78 677-763 203-288 (484)
376 3q5i_A Protein kinase; CDPK, m 97.2 3.3E-05 1.1E-09 85.2 -1.0 85 676-763 222-308 (504)
377 4e7w_A Glycogen synthase kinas 97.2 8.9E-05 3.1E-09 78.8 2.4 82 677-758 218-321 (394)
378 1ua2_A CAK, cell division prot 97.2 0.0001 3.5E-09 76.8 2.8 83 677-759 189-292 (346)
379 3eb0_A Putative uncharacterize 97.2 6.8E-05 2.3E-09 79.5 1.4 87 670-758 210-321 (383)
380 1o6l_A RAC-beta serine/threoni 97.2 3.4E-05 1.2E-09 80.0 -1.1 81 671-758 175-260 (337)
381 2b9h_A MAP kinase FUS3, mitoge 97.2 2.6E-05 8.9E-10 81.7 -2.0 27 676-702 198-224 (353)
382 2fst_X Mitogen-activated prote 97.2 0.0001 3.6E-09 77.4 2.5 31 671-701 199-230 (367)
383 3e7e_A HBUB1, BUB1A, mitotic c 97.2 0.00018 6.1E-09 75.6 3.8 87 670-767 254-341 (365)
384 3rgf_A Cyclin-dependent kinase 97.2 0.00011 3.8E-09 78.4 2.2 31 671-701 205-236 (405)
385 1cm8_A Phosphorylated MAP kina 97.2 0.00016 5.4E-09 76.0 3.2 27 676-702 201-227 (367)
386 1rdq_E PKA C-alpha, CAMP-depen 97.1 4.1E-05 1.4E-09 79.9 -1.8 82 670-758 207-293 (350)
387 3a62_A Ribosomal protein S6 ki 97.1 3.8E-05 1.3E-09 79.4 -2.0 82 670-758 190-276 (327)
388 2r5t_A Serine/threonine-protei 97.1 2.4E-05 8.3E-10 82.3 -3.6 84 670-760 208-291 (373)
389 4b99_A Mitogen-activated prote 97.1 0.00015 5.3E-09 76.4 2.5 32 670-701 231-263 (398)
390 4fr4_A YANK1, serine/threonine 97.1 8.7E-05 3E-09 78.2 0.5 77 677-757 193-270 (384)
391 3uto_A Twitchin; kinase, muscl 97.1 0.00024 8.2E-09 79.0 3.7 80 670-758 325-410 (573)
392 3txo_A PKC-L, NPKC-ETA, protei 97.1 3.3E-05 1.1E-09 80.6 -3.1 77 670-753 193-269 (353)
393 4dc2_A Protein kinase C IOTA t 97.1 6.1E-05 2.1E-09 79.7 -1.1 80 670-753 222-307 (396)
394 3oz6_A Mitogen-activated prote 97.1 0.00012 4.2E-09 77.6 1.2 26 676-701 206-231 (388)
395 1fot_A TPK1 delta, CAMP-depend 97.0 7.2E-05 2.5E-09 76.8 -1.4 82 670-758 172-258 (318)
396 3a8x_A Protein kinase C IOTA t 97.0 6E-05 2.1E-09 78.4 -2.1 80 670-753 179-264 (345)
397 1xjd_A Protein kinase C, theta 97.0 2.5E-05 8.4E-10 81.3 -5.1 79 670-757 187-268 (345)
398 4f9c_A Cell division cycle 7-r 97.0 0.00031 1E-08 73.2 3.1 32 670-701 215-247 (361)
399 2i0e_A Protein kinase C-beta I 96.9 6.7E-05 2.3E-09 78.3 -2.3 76 671-753 191-266 (353)
400 3pfq_A PKC-B, PKC-beta, protei 96.8 0.00012 4.1E-09 83.4 -1.5 77 670-753 511-587 (674)
401 2acx_A G protein-coupled recep 96.7 0.00017 5.9E-09 79.6 -1.1 85 670-758 354-444 (576)
402 3c4z_A Rhodopsin kinase; Ser/T 96.7 0.0003 1E-08 77.4 0.7 81 670-754 358-439 (543)
403 2pzi_A Probable serine/threoni 96.6 0.00062 2.1E-08 77.9 2.2 73 678-763 253-326 (681)
404 3v8s_A RHO-associated protein 96.6 0.00057 1.9E-08 72.7 1.5 24 678-701 250-273 (410)
405 3n9x_A Phosphotransferase; mal 96.6 0.0011 3.9E-08 71.1 3.9 26 675-700 226-251 (432)
406 3rp9_A Mitogen-activated prote 96.5 0.0006 2.1E-08 74.0 0.9 26 675-700 258-283 (458)
407 4aw2_A Serine/threonine-protei 96.4 0.00045 1.6E-08 74.0 -0.7 27 675-701 255-281 (437)
408 1pgv_A TMD-1, tropomodulin TMD 96.4 0.00083 2.8E-08 62.2 1.1 12 100-111 39-50 (197)
409 1pgv_A TMD-1, tropomodulin TMD 96.2 0.0013 4.4E-08 61.0 1.7 66 74-139 38-111 (197)
410 3rfe_A Platelet glycoprotein I 96.1 0.0094 3.2E-07 51.4 6.6 56 540-597 12-68 (130)
411 2vd5_A DMPK protein; serine/th 96.0 0.0019 6.4E-08 68.7 1.6 26 676-701 245-270 (412)
412 3rfe_A Platelet glycoprotein I 95.8 0.014 4.9E-07 50.3 6.3 34 79-113 33-66 (130)
413 3v5w_A G-protein coupled recep 95.7 0.002 6.8E-08 71.7 0.5 79 670-752 359-438 (689)
414 2lz0_A Uncharacterized protein 87.2 1.5 5.2E-05 35.3 6.7 46 40-86 7-52 (100)
415 2lz0_A Uncharacterized protein 85.6 1.5 5.1E-05 35.3 5.8 50 14-64 5-54 (100)
416 2vuw_A Serine/threonine-protei 37.1 9.6 0.00033 38.4 1.0 24 679-702 254-278 (336)
417 1kdl_A YOPD protein; yersinia, 25.5 38 0.0013 18.8 1.6 14 753-766 4-17 (26)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-76 Score=694.13 Aligned_cols=655 Identities=34% Similarity=0.514 Sum_probs=594.9
Q ss_pred CCCcEEEccCCCCCCC---ccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCc--cCCCCCCc
Q 003931 5 SELQYLSVYDNNLNGA---IPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPS--FILTCRNL 79 (785)
Q Consensus 5 ~~L~~L~L~~n~i~~~---~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L 79 (785)
..++.|+|+++.+.+. ++.++.++++|+.++++.+.+..+ +..|..+++|++|+|++|.+++.+|. .++.+++|
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS-VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEEC-CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCC-chhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence 3688999999999887 788899999999999999877543 35799999999999999999988888 89999999
Q ss_pred cEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCcc---ccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEE
Q 003931 80 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN---VSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVE 156 (785)
Q Consensus 80 ~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~---~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 156 (785)
++|++++|.+.+.+|..++.++++|++|++++|.+++..+.. +.++++|++|++++|.+++..+ +..+++|++|+
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~ 206 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLD 206 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEE
T ss_pred CEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEE
Confidence 999999999988888777689999999999999999888877 8899999999999999987655 48899999999
Q ss_pred cccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcc
Q 003931 157 LFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSG 236 (785)
Q Consensus 157 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 236 (785)
+++|.+.+.+|. ++++++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|.. .+++|++|++++|.+++
T Consensus 207 Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~ 283 (768)
T 3rgz_A 207 VSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283 (768)
T ss_dssp CCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEE
T ss_pred CcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCC
Confidence 999999988777 999999999999999999999999999999999999999999877765 88999999999999999
Q ss_pred ccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChh-ccCCCCCCEEECcCCcccccCCccC
Q 003931 237 EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE-IEKLTSLENLDLSGNQLSGTIPPTL 315 (785)
Q Consensus 237 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~n~l~~~~p~~l 315 (785)
.+|..+...+++|++|++++|.+.+.+|..++.+++|++|++++|.++|.+|.. +..+++|++|++++|.+++.+|..+
T Consensus 284 ~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l 363 (768)
T 3rgz_A 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESL 363 (768)
T ss_dssp SCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTH
T ss_pred ccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHH
Confidence 999885555699999999999999999999999999999999999999888876 8999999999999999999999999
Q ss_pred cCCC-CCCEEEcccccccCCCCCCCCC--CCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCC
Q 003931 316 WNLT-NLLSLQLFSNNLSGTIPPEIGS--MASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSP 392 (785)
Q Consensus 316 ~~l~-~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~ 392 (785)
..++ +|++|++++|++++.+|..+.. +++|++|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+.
T Consensus 364 ~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~- 442 (768)
T 3rgz_A 364 TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS- 442 (768)
T ss_dssp HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-
T ss_pred HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCC-
Confidence 9887 9999999999999988888877 88999999999999999999999999999999999999999999998886
Q ss_pred CccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEcc
Q 003931 393 SLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLS 472 (785)
Q Consensus 393 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls 472 (785)
+|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+.++++|++|++++|++++.+|.+++.+++|+.|+++
T Consensus 443 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 522 (768)
T 3rgz_A 443 KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccC----------------------ccccCCCc
Q 003931 473 GNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSN----------------------ELTGKIPT 530 (785)
Q Consensus 473 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n----------------------~l~~~~~~ 530 (785)
+|++.+.+|..++.+++|+.|++++|.++|.+|..+.....+..+++..+ .+.+..+.
T Consensus 523 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp SSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 99999999999999999999999999999999998887776666555431 23445566
Q ss_pred ccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCCcccchhhhh
Q 003931 531 DLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVL 610 (785)
Q Consensus 531 ~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l 610 (785)
.+..+..++.++++.|.+.|.+|..+..+++|++||+++|+++|.+|..++.++.|+.|++++|+++|.+|..++++..+
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L 682 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCC
Confidence 67777888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hheeecccccCCCCCCcccccCCCCceEeccCCceeeecCCcccccccceeeecCCCc
Q 003931 611 QYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNE 668 (785)
Q Consensus 611 ~~~l~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~ 668 (785)
+. ||+++|+++|.+|..++.+++|++|++++|+++|.+|.. ..+..+....+.+|+
T Consensus 683 ~~-LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~ 738 (768)
T 3rgz_A 683 NI-LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNP 738 (768)
T ss_dssp CE-EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCT
T ss_pred CE-EECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCc
Confidence 87 999999999999999999999999999999999999975 234445555566664
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.4e-74 Score=672.77 Aligned_cols=632 Identities=31% Similarity=0.445 Sum_probs=582.8
Q ss_pred CCCCEEeCCCCCCCCC---CccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCCh--hhhcCCCC
Q 003931 29 RKVRYLDLGGNFLETP---DWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPE--RLFTNLGK 103 (785)
Q Consensus 29 ~~L~~L~L~~n~i~~~---~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~f~~l~~ 103 (785)
.+++.|+|+++.+... .+.+|.+++.|+.++++.+.+.. .|..|..+++|++|+|++|.+++.+|. . ++++++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-l~~l~~ 127 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING-SVSGFKCSASLTSLDLSRNSLSGPVTTLTS-LGSCSG 127 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEE-CCCCCCCCTTCCEEECCSSEEEEEGGGGGG-GGGCTT
T ss_pred CcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCC-CchhhccCCCCCEEECCCCcCCCcCCChHH-HhCCCC
Confidence 5799999999988765 45688999999999999988753 567899999999999999999988876 4 489999
Q ss_pred CcEEECCCCCCcccCCccc-cCCCCCcEEEcCCCcccccCCcC---CCCCCCCCEEEcccCcccccCCccccCCCCCCEE
Q 003931 104 LEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGD---IGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHL 179 (785)
Q Consensus 104 L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~---l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 179 (785)
|++|++++|.+.+..+..+ .++++|++|++++|.+++..|.. +.++++|++|++++|.+.+..| +..+++|++|
T Consensus 128 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L 205 (768)
T 3rgz_A 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFL 205 (768)
T ss_dssp CCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEE
T ss_pred CCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEE
Confidence 9999999999998877766 89999999999999999888776 8899999999999999987665 4889999999
Q ss_pred EcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcC
Q 003931 180 DLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF 259 (785)
Q Consensus 180 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 259 (785)
++++|.+++.+|. ++.+++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|.. .+++|++|++++|.+
T Consensus 206 ~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l 281 (768)
T 3rgz_A 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKF 281 (768)
T ss_dssp ECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEE
T ss_pred ECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCcc
Confidence 9999999988877 999999999999999999999999999999999999999999877763 789999999999999
Q ss_pred cccCCccCcCC-CCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCcc-CcCCCCCCEEEcccccccCCCCC
Q 003931 260 MGNIPPEIGLL-TKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPT-LWNLTNLLSLQLFSNNLSGTIPP 337 (785)
Q Consensus 260 ~~~~~~~~~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~ 337 (785)
.+.+|..+... ++|++|++++|.+++.+|..|+++++|++|++++|.+++.+|.. +..+++|++|++++|++++.+|.
T Consensus 282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~ 361 (768)
T 3rgz_A 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361 (768)
T ss_dssp EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence 99999988775 99999999999999999999999999999999999999888876 99999999999999999999999
Q ss_pred CCCCCC-CCCEEEccCCcCccccCccccc--cCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccC
Q 003931 338 EIGSMA-SLVAFDVNTNQLHGELPENISR--LVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCS 414 (785)
Q Consensus 338 ~~~~l~-~L~~L~l~~n~l~~~~~~~~~~--l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 414 (785)
.+..++ +|+.|++++|.+.+.+|..+.. +++|+++++++|.+++.+|..+..+. +|+.|++++|.+++.+|..+..
T Consensus 362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~ 440 (768)
T 3rgz_A 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGS 440 (768)
T ss_dssp THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGG
T ss_pred HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhc
Confidence 999887 9999999999999999888876 88999999999999999999998886 9999999999999999999999
Q ss_pred CCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeeecccchhcccccceec
Q 003931 415 GFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQ 494 (785)
Q Consensus 415 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 494 (785)
+++|+.|++++|.+.+.+|..+..+++|++|++++|++++..|..++.+++|+.|++++|++.+.+|..++.+++|+.|+
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCC----------------------cccCcC
Q 003931 495 LDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNN----------------------HLTGEI 552 (785)
Q Consensus 495 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n----------------------~l~~~~ 552 (785)
+++|++++.+|..+..+++|+.|++++|++++.+|..+.....+..+++..+ .+.+..
T Consensus 521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600 (768)
T ss_dssp CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999888777766655442 234455
Q ss_pred CcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCCcccchhhhhhheeecccccCCCCCCcccccC
Q 003931 553 PKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKL 632 (785)
Q Consensus 553 p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~~~l~ls~n~l~~~~~~~~~~l 632 (785)
+..+..++.+..++++.|.+.|.+|..++.+++|+.||+++|+++|.+|..++++..++. |++++|.++|.+|..++.+
T Consensus 601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~-L~Ls~N~l~g~ip~~l~~L 679 (768)
T 3rgz_A 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI-LNLGHNDISGSIPDEVGDL 679 (768)
T ss_dssp GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE-EECCSSCCCSCCCGGGGGC
T ss_pred chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE-EeCcCCccCCCCChHHhCC
Confidence 666777888889999999999999999999999999999999999999999999999987 9999999999999999999
Q ss_pred CCCceEeccCCceeeecCCcccccccceeeecCCCchh
Q 003931 633 TSLEILNLSRNQLSGRIPASLSSMISLRSVDFSDNELT 670 (785)
Q Consensus 633 ~~L~~L~l~~n~l~~~~~~~~~~l~~l~~l~l~~n~l~ 670 (785)
++|++||+++|+++|.+|..+..+++|+.+|+++|++.
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 99999999999999999999999999999999999986
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-61 Score=562.76 Aligned_cols=587 Identities=23% Similarity=0.222 Sum_probs=408.5
Q ss_pred CcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCC
Q 003931 7 LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL 86 (785)
Q Consensus 7 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 86 (785)
-+.++.++++++.++ ..+. +++++|++++|.++.+.+.+|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 6 ~~~~~cs~~~L~~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 6 HEVADCSHLKLTQVP-DDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SSEEECCSSCCSSCC-SCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CCeeECCCCCccccc-cccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 367888888888544 3343 6899999999999999888899999999999999999988888999999999999999
Q ss_pred CCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccC
Q 003931 87 NKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI 166 (785)
Q Consensus 87 n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 166 (785)
|.++ .+|...|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..
T Consensus 83 n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 83 NELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp SCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred CccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccC
Confidence 9998 678777789999999999999998887788999999999999999998888888889999999999999988776
Q ss_pred Ccccc--CCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhcc---CCCCCCEEEccCCCCccccCcc
Q 003931 167 PSSLG--QLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLS---NLSKLNDLGLSDNFLSGEISAN 241 (785)
Q Consensus 167 ~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~---~l~~L~~L~L~~n~l~~~~~~~ 241 (785)
+..+. .+++|++|++++|.+++..+..++.+++|+.+++.++.+.......+. ..++|+.|++++|.+.+..+..
T Consensus 162 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~ 241 (680)
T 1ziw_A 162 SEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241 (680)
T ss_dssp HHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTT
T ss_pred HHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhH
Confidence 66554 558899999999999888888888889999999888877643222221 3478888888888888655554
Q ss_pred ccCCCCC--CCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccc-----cCCc-
Q 003931 242 LIGNWTE--LESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSG-----TIPP- 313 (785)
Q Consensus 242 ~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-----~~p~- 313 (785)
+..++. |++|++++|.+.+..|..++.+++|++|++++|.+++..|.+|..+++|+.|++++|...+ .+|.
T Consensus 242 -~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 242 -FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp -TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred -hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence 666544 8888888888888878888888888888888888888888888888888888888775543 2222
Q ss_pred ---cCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcccc--CccccccCCCcEEEecCccccccCCcccc
Q 003931 314 ---TLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL--PENISRLVKLNKFSVFTNNFSGSIPGDFG 388 (785)
Q Consensus 314 ---~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~l~l~~n~l~~~~~~~~~ 388 (785)
.+..+++|++|++++|.+++..+..+..+++|+++++++|.+.... +..+..+.
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~--------------------- 379 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLA--------------------- 379 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGT---------------------
T ss_pred ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccc---------------------
Confidence 5677788888888888888777777778888888888877653221 11121110
Q ss_pred cCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCC-ccccCCCCCcEEEcccCccccccCcccCCCCCCc
Q 003931 389 KFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLP-ACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLD 467 (785)
Q Consensus 389 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 467 (785)
.++++.+++++|++.+..|..+..+.+|+.|++++|.+.+.+| ..+.++++|++|++++|++.+..+..|..+++|+
T Consensus 380 --~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 457 (680)
T 1ziw_A 380 --HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457 (680)
T ss_dssp --TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCC
T ss_pred --cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccc
Confidence 0245555555555555555555555555555555555544333 4455555555555555555555555555555555
Q ss_pred EEEccCCeee--eecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCC--------cccccCCC
Q 003931 468 FIRLSGNQFV--GEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIP--------TDLGKLVK 537 (785)
Q Consensus 468 ~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~l~~l~~ 537 (785)
.|++++|.+. +..|..|..+++|+.|++++|.+++..+..|.++++|+.|++++|++++..+ ..+..+++
T Consensus 458 ~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~ 537 (680)
T 1ziw_A 458 RLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537 (680)
T ss_dssp EEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTT
T ss_pred cchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCC
Confidence 5555555554 3445555555555666665555555555555555556666666655553311 12455566
Q ss_pred CCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCCcccc-hhhhhhheeec
Q 003931 538 LFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLG-NLFVLQYMLDL 616 (785)
Q Consensus 538 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~-~l~~l~~~l~l 616 (785)
|+.|++++|+++...+..|..+++|++|++++|++++..+..|..+++|+.|++++|++++..|..++ .+..++. +++
T Consensus 538 L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~-l~l 616 (680)
T 1ziw_A 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTE-LDM 616 (680)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSE-EEC
T ss_pred CCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCE-EEc
Confidence 66666666666533333456666666666666666655555555666666666666666655554444 4455544 566
Q ss_pred ccccCC
Q 003931 617 SSNSLS 622 (785)
Q Consensus 617 s~n~l~ 622 (785)
++|.+.
T Consensus 617 ~~N~~~ 622 (680)
T 1ziw_A 617 RFNPFD 622 (680)
T ss_dssp TTCCCC
T ss_pred cCCCcc
Confidence 666554
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-60 Score=555.54 Aligned_cols=590 Identities=21% Similarity=0.198 Sum_probs=500.2
Q ss_pred CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCC
Q 003931 32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE 111 (785)
Q Consensus 32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~ 111 (785)
+.++++++.++.++.. +. +++++|++++|.+++..+..|.++++|++|++++|.+++ ++...|.++++|++|++++
T Consensus 7 ~~~~cs~~~L~~ip~~-~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDD-LP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCCSSCCSC-SC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCS
T ss_pred CeeECCCCCccccccc-cC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCC
Confidence 5789999999887743 33 789999999999999888899999999999999999985 4445669999999999999
Q ss_pred CCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCC
Q 003931 112 NQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIP 191 (785)
Q Consensus 112 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 191 (785)
|.+++..+..|.++++|++|++++|++++..|..|+++++|++|++++|.+.+..|..++++++|++|++++|.+++..+
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 99997777789999999999999999998877889999999999999999998888889999999999999999987776
Q ss_pred cccc--CCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCcccc--CCCCCCCEEEeecCcCcccCCccC
Q 003931 192 PELG--LCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLI--GNWTELESLQIQNNSFMGNIPPEI 267 (785)
Q Consensus 192 ~~~~--~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~ 267 (785)
..+. .+++|++|++++|.+++..|..+..+++|+.|+++++.+.+....... -..++|+.|++++|.+.+..|.++
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~ 242 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF 242 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence 6554 568999999999999988899999999999999999887643222111 134789999999999998888888
Q ss_pred cCCCC--CcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCC-----CC----
Q 003931 268 GLLTK--LQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGT-----IP---- 336 (785)
Q Consensus 268 ~~l~~--L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-----~p---- 336 (785)
..++. |++|++++|.+++..|.+|+.+++|+.|++++|.+++..|..+.++++|++|++++|...+. +|
T Consensus 243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~ 322 (680)
T 1ziw_A 243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD 322 (680)
T ss_dssp GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence 88765 99999999999888888899999999999999999988888899999999999988765432 22
Q ss_pred CCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCcccc--C
Q 003931 337 PEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELC--S 414 (785)
Q Consensus 337 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~ 414 (785)
..+..+++|+++++++|.+.+..+..+..+++|+.+++++|.+... ......+. .
T Consensus 323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~-----------------------~l~~~~f~~~~ 379 (680)
T 1ziw_A 323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR-----------------------TLTNETFVSLA 379 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCC-----------------------EECTTTTGGGT
T ss_pred hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhh-----------------------hcchhhhcccc
Confidence 2556677777777777777766666666666666666665543211 11111122 2
Q ss_pred CCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccC-cccCCCCCCcEEEccCCeeeeecccchhccccccee
Q 003931 415 GFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNIT-KAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNL 493 (785)
Q Consensus 415 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 493 (785)
...|+.+++++|.+++..|..+..+++|++|++++|.+.+.++ ..|..+++|+.|++++|++.+..+..|..+++|+.|
T Consensus 380 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 380 HSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp TSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEE
T ss_pred cCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccc
Confidence 3579999999999999999999999999999999999987665 789999999999999999999999999999999999
Q ss_pred ccccceee--eccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCC--------cccccCCCCC
Q 003931 494 QLDRNRIS--GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIP--------KSISNLTELA 563 (785)
Q Consensus 494 ~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p--------~~~~~l~~L~ 563 (785)
++++|.+. +..|..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+ ..+..+++|+
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred hhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence 99999987 5678899999999999999999998888889999999999999999986422 2378899999
Q ss_pred eEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCCcccchhhhhhheeecccccCCCCCCcccc-cCCCCceEeccC
Q 003931 564 YLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELG-KLTSLEILNLSR 642 (785)
Q Consensus 564 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~~~l~ls~n~l~~~~~~~~~-~l~~L~~L~l~~ 642 (785)
+|++++|+++...+..|..+++|+.|++++|++++..+..|.++..++. +++++|.+++..+..++ .+++|+++++++
T Consensus 540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~-L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS-LNLQKNLITSVEKKVFGPAFRNLTELDMRF 618 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE-EECTTSCCCBCCHHHHHHHHTTCSEEECTT
T ss_pred EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCE-EECCCCcCCccChhHhcccccccCEEEccC
Confidence 9999999999766678999999999999999999877777889999987 99999999998888887 789999999999
Q ss_pred Cceeeec
Q 003931 643 NQLSGRI 649 (785)
Q Consensus 643 n~l~~~~ 649 (785)
|.+....
T Consensus 619 N~~~c~c 625 (680)
T 1ziw_A 619 NPFDCTC 625 (680)
T ss_dssp CCCCBCC
T ss_pred CCcccCC
Confidence 9987643
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.1e-55 Score=503.11 Aligned_cols=535 Identities=19% Similarity=0.180 Sum_probs=402.0
Q ss_pred CcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCC
Q 003931 7 LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL 86 (785)
Q Consensus 7 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 86 (785)
-+.++.++..++.+ |..+. +++++|++++|.++.+.+.+|.++++|++|++++|.+.++.|..|.++++|++|++++
T Consensus 14 ~~~~~c~~~~l~~i-P~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 14 NKTYNCENLGLNEI-PGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTEEECTTSCCSSC-CTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCCcccC-cCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 35677777777744 43343 3789999999999998888999999999999999999988899999999999999999
Q ss_pred CCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccC
Q 003931 87 NKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI 166 (785)
Q Consensus 87 n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 166 (785)
|.+++..|. .|.++++|++|++++|.+++..+..+.++++|++|++++|.+++.....+..+++|++|++++|.+.+..
T Consensus 91 n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 91 NPLIFMAET-ALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp CCCSEECTT-TTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred CcccccChh-hhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC
Confidence 999854444 4689999999999999999877888999999999999999998755445556899999999999998888
Q ss_pred CccccCCCCCC--EEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcc----ccCc
Q 003931 167 PSSLGQLKNLQ--HLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSG----EISA 240 (785)
Q Consensus 167 ~~~l~~l~~L~--~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~----~~~~ 240 (785)
|..++.+++|+ +|++++|.+.+..|..+.. ..|+.+++++|. ..+..+..+.+++...+....+.+ .++.
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~ 245 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred hhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHHHhhhccccchhheechhhccccccccCh
Confidence 88888999998 8899999998777766554 688999998886 334455555555444443332221 2223
Q ss_pred cccCCCC--CCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCC
Q 003931 241 NLIGNWT--ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNL 318 (785)
Q Consensus 241 ~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 318 (785)
..+..+. +|+.|++++|.+.+..+..|+.+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l 324 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNF 324 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC
T ss_pred hHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhcc
Confidence 3333332 5677777777777666666777777777777777776 566667777777777777777776666677777
Q ss_pred CCCCEEEcccccccCCCCCC-CCCCCCCCEEEccCCcCcccc--CccccccCCCcEEEecCccccccCCcccccCCCCcc
Q 003931 319 TNLLSLQLFSNNLSGTIPPE-IGSMASLVAFDVNTNQLHGEL--PENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLI 395 (785)
Q Consensus 319 ~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~ 395 (785)
++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+.. +..+..++ +|+
T Consensus 325 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-------------------------~L~ 379 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS-------------------------HLQ 379 (606)
T ss_dssp TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT-------------------------TCC
T ss_pred CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCC-------------------------CCC
Confidence 77777777777776555443 666777777777777666543 44444444 455
Q ss_pred EEEcccccceecCCccccCCCCCcEEEccCCCCcccCCc-cccCCCCCcEEEcccCccccccCcccCCCCCCcEEEccCC
Q 003931 396 NVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPA-CLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGN 474 (785)
Q Consensus 396 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n 474 (785)
.|++++|.+.+..|..+..+++|+.|++++|.+.+..+. .+..+++|++|++++|.+.+..+..++.+++|+.|++++|
T Consensus 380 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 380 SLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459 (606)
T ss_dssp EEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC
Confidence 555555555555555566666667777777766655443 3677777888888888877777777777888888888888
Q ss_pred eeeee---cccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCc
Q 003931 475 QFVGE---ISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGE 551 (785)
Q Consensus 475 ~l~~~---~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 551 (785)
++.+. .+..+..+++|+.|++++|.+++..|..|..+++|+.|++++|++++..|..+..++.| +|++++|++++.
T Consensus 460 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~ 538 (606)
T 3t6q_A 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISII 538 (606)
T ss_dssp BCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCC
T ss_pred CCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccccc
Confidence 87652 23567888888999999998888888888889999999999999988888888889999 999999999988
Q ss_pred CCcccccCCCCCeEecCCCcCccCC
Q 003931 552 IPKSISNLTELAYLDLSNNKLTGDV 576 (785)
Q Consensus 552 ~p~~~~~l~~L~~L~Ls~n~l~~~~ 576 (785)
.|..+..+++|+++++++|.+....
T Consensus 539 ~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 539 LPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CHhhcccCCCCCEEeCCCCCccccC
Confidence 8888888899999999999887543
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.6e-55 Score=502.48 Aligned_cols=540 Identities=19% Similarity=0.186 Sum_probs=371.1
Q ss_pred CCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECC
Q 003931 31 VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT 110 (785)
Q Consensus 31 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls 110 (785)
-+.++.++..++.++.. +. +.+++|++++|.++++.|..|.++++|++|++++|.+.+ ++...|.++++|++|+++
T Consensus 14 ~~~~~c~~~~l~~iP~~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGT-LP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLT 89 (606)
T ss_dssp TTEEECTTSCCSSCCTT-SC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECT
T ss_pred CceEECCCCCcccCcCC-CC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCC
Confidence 34677777777766532 32 367788888888777777777777788888888777774 333445777777777777
Q ss_pred CCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccC
Q 003931 111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTI 190 (785)
Q Consensus 111 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 190 (785)
+|.+++..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 90 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 90 ANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp TCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred CCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccC
Confidence 77777777777777777777777777777665666777777777777777777644344445777777777777777666
Q ss_pred CccccCCcccC--eeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCc
Q 003931 191 PPELGLCTNLS--YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIG 268 (785)
Q Consensus 191 ~~~~~~l~~L~--~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 268 (785)
+..++.+++|+ .|++++|.+++..|..+.. .+|+.|++++|... +.. +..+.++....+....+.+
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~---~~~-~~~l~~~~l~~l~~~~~~~------- 237 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNL---LVI-FKGLKNSTIQSLWLGTFED------- 237 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCH---HHH-HHHTTTCEEEEEECCCCTT-------
T ss_pred hhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhH---HHH-hhhccccchhheechhhcc-------
Confidence 66666667666 6667777776655554433 45666666666521 111 3333333333332222111
Q ss_pred CCCCCcEEECcCccccccCChhccCCC--CCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCC
Q 003931 269 LLTKLQYLFLYRNNFSGPIPSEIEKLT--SLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLV 346 (785)
Q Consensus 269 ~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 346 (785)
+....+ .+..|..+. +|+.|++++|.+++..+..|+.+++|++|++++|.++ .+|..+..+++|+
T Consensus 238 ----~~~~~i--------~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~ 304 (606)
T 3t6q_A 238 ----MDDEDI--------SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLK 304 (606)
T ss_dssp ----SCCCCC--------CGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCC
T ss_pred ----cccccc--------ChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCC
Confidence 111111 111222221 4566666666666555555666666666666666665 5555666666666
Q ss_pred EEEccCCcCccccCccccccCCCcEEEecCccccccCCcc-cccCCCCccEEEcccccceecC--CccccCCCCCcEEEc
Q 003931 347 AFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGD-FGKFSPSLINVSFSNNSFSGEL--PHELCSGFALEELTV 423 (785)
Q Consensus 347 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l 423 (785)
+|++++|.+.+..|..+..+++|+.+++++|.+.+.+|.. +..+ ++|+.|++++|.+.+.. +..+..+++|++|++
T Consensus 305 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 383 (606)
T 3t6q_A 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL-ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383 (606)
T ss_dssp EEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC-TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEEC
T ss_pred EEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc-CcCCEEECCCCccccccCcchhcccCCCCCEEEC
Confidence 6666666666655666666666666666666666555544 3333 37777777777776654 666777888888888
Q ss_pred cCCCCcccCCccccCCCCCcEEEcccCccccccCc-ccCCCCCCcEEEccCCeeeeecccchhcccccceeccccceeee
Q 003931 424 NGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITK-AFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISG 502 (785)
Q Consensus 424 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~ 502 (785)
++|.+.+..|..+..+++|++|++++|++.+..+. .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+
T Consensus 384 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp CSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 88888888888888888888888888888776554 47788888888888888887777788888888888888888875
Q ss_pred c---cCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCcc
Q 003931 503 G---IPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQE 579 (785)
Q Consensus 503 ~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 579 (785)
. .+..+..+++|+.|++++|.+++..|..|+.+++|++|++++|++++..|..+..++.| +|++++|++++..|..
T Consensus 464 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~ 542 (606)
T 3t6q_A 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542 (606)
T ss_dssp GEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGG
T ss_pred cccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhh
Confidence 2 23567888888888888888887778888888888888888888888888888888888 8888888888777777
Q ss_pred ccccCCCcEEeCCCCcCcccCC
Q 003931 580 LGRFDKLLSLNLSHNDLSGEIP 601 (785)
Q Consensus 580 l~~l~~L~~L~ls~N~l~~~~p 601 (785)
+..+++|+.+++++|++.+..+
T Consensus 543 ~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 543 LPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp HHHHHTSSEEECTTCCEECSGG
T ss_pred cccCCCCCEEeCCCCCccccCC
Confidence 8888888888888888875543
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=6.4e-54 Score=492.13 Aligned_cols=530 Identities=21% Similarity=0.218 Sum_probs=342.7
Q ss_pred CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCC
Q 003931 32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE 111 (785)
Q Consensus 32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~ 111 (785)
++++.+++.++.++.+.. +++++|++++|.+++..+..|.++++|++|++++|.+++ ++...|.++++|++|+|++
T Consensus 14 ~~~~c~~~~l~~ip~~~~---~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP---SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TEEECTTSCCSSCCTTSC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTT
T ss_pred CceEccCCCcccCCCCCC---CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCC
Confidence 345555555555543211 455555555555555555555555555555555555552 3333345555566666665
Q ss_pred CCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccc-cCCccccCCCCCCEEEcccCcCcccC
Q 003931 112 NQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG-QIPSSLGQLKNLQHLDLRMNALNYTI 190 (785)
Q Consensus 112 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~ 190 (785)
|.+++..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 55555555555556666666666666555544555566666666666665554 34555666666666666666666555
Q ss_pred CccccCCcccC----eeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCccc----
Q 003931 191 PPELGLCTNLS----YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN---- 262 (785)
Q Consensus 191 ~~~~~~l~~L~----~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~---- 262 (785)
+..++.+++|+ ++++++|.+++..+..+... +|++|++++|.+.+...+..+++++.|+.+++..+.+.+.
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 55555554443 46666666654444443333 5666666666555433333355566666655544333211
Q ss_pred --CCccCcCCC--CCcEEEC-cCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCC
Q 003931 263 --IPPEIGLLT--KLQYLFL-YRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPP 337 (785)
Q Consensus 263 --~~~~~~~l~--~L~~L~L-~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 337 (785)
.+..+..+. .++.+++ ..|.+.+.+|. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+ +.+|
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp- 323 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP- 323 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC-
T ss_pred ccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc-
Confidence 011111111 2444444 44455555554 555666666666666654 333 555566666666666665 3444
Q ss_pred CCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceec--CCccccCC
Q 003931 338 EIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE--LPHELCSG 415 (785)
Q Consensus 338 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~ 415 (785)
.+ .+++|+.+++++|...+.. .+..++ +|+.|++++|.+++. .+..+..+
T Consensus 324 ~~-~l~~L~~L~l~~n~~~~~~--~~~~l~-------------------------~L~~L~ls~n~l~~~~~~~~~~~~~ 375 (606)
T 3vq2_A 324 TL-DLPFLKSLTLTMNKGSISF--KKVALP-------------------------SLSYLDLSRNALSFSGCCSYSDLGT 375 (606)
T ss_dssp CC-CCSSCCEEEEESCSSCEEC--CCCCCT-------------------------TCCEEECCSSCEEEEEECCHHHHCC
T ss_pred cC-CCCccceeeccCCcCccch--hhccCC-------------------------CCCEEECcCCccCCCcchhhhhccC
Confidence 23 5555555555555333222 122222 566666666666544 35667777
Q ss_pred CCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccC-cccCCCCCCcEEEccCCeeeeecccchhcccccceec
Q 003931 416 FALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNIT-KAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQ 494 (785)
Q Consensus 416 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 494 (785)
++|++|++++|.+.+ +|..+..+++|++|++++|++.+..+ ..+..+++|+.|++++|.+.+..|..+..+++|+.|+
T Consensus 376 ~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 454 (606)
T 3vq2_A 376 NSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454 (606)
T ss_dssp SCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred CcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence 778888888888775 44778888888999999988888777 6788889999999999999888888899999999999
Q ss_pred cccceeee-ccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCc
Q 003931 495 LDRNRISG-GIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLT 573 (785)
Q Consensus 495 L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 573 (785)
+++|.+++ ..|..+..+++|+.|++++|.+++..|..++.+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus 455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 99999987 47888999999999999999999888888999999999999999999888999999999999999999998
Q ss_pred cCCCccccccC-CCcEEeCCCCcCcccCC
Q 003931 574 GDVPQELGRFD-KLLSLNLSHNDLSGEIP 601 (785)
Q Consensus 574 ~~~p~~l~~l~-~L~~L~ls~N~l~~~~p 601 (785)
.+|..+..++ +|+.+++++|++.+..+
T Consensus 535 -~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 535 -TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp -CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred -ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 5666688886 59999999999986554
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.5e-53 Score=487.19 Aligned_cols=530 Identities=18% Similarity=0.188 Sum_probs=406.3
Q ss_pred CcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcC
Q 003931 55 LTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLA 134 (785)
Q Consensus 55 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 134 (785)
-++++.+++.++.++ ..+. +++++|++++|.+++ ++...|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 13 ~~~~~c~~~~l~~ip-~~~~--~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKLSKVP-DDIP--SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCCSSCC-TTSC--TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEccCCCcccCC-CCCC--CCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 356788888777443 3333 678888888888874 555556888888888888888887777888888888888888
Q ss_pred CCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcc-cCCccccCCcccCeeeccccccccC
Q 003931 135 TNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY-TIPPELGLCTNLSYLALAVNQLSGG 213 (785)
Q Consensus 135 ~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~~ 213 (785)
+|.+++..|..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++.
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 888887778888888888888888888887776778888888888888888875 4577888888888888888888877
Q ss_pred CchhccCCCCCC----EEEccCCCCccccCccccCCCCCCCEEEeecCcCc-ccCCccCcCCCCCcEEECcCcccccc--
Q 003931 214 LPLSLSNLSKLN----DLGLSDNFLSGEISANLIGNWTELESLQIQNNSFM-GNIPPEIGLLTKLQYLFLYRNNFSGP-- 286 (785)
Q Consensus 214 ~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~-- 286 (785)
.+..++.+++|+ +|++++|.++ .+++..+... +|++|++++|.+. +..|..++.++.|+.+++..+.+.+.
T Consensus 169 ~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp CTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 777666655544 7888888887 4555434444 7888888888775 34566677777777777765543321
Q ss_pred ----CChhccCCC--CCCEEEC-cCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcccc
Q 003931 287 ----IPSEIEKLT--SLENLDL-SGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL 359 (785)
Q Consensus 287 ----~p~~~~~l~--~L~~L~L-s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 359 (785)
.+..+..+. .++.+++ ..|.+.+.+|. +..+++|+.|++++|.+. .+| .+..+++|+.+++++|.+ +.+
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~l 322 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQF 322 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSC
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-ccc
Confidence 111111111 2344444 44555555554 556666666666666654 233 455555555555555555 333
Q ss_pred CccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCccc--CCcccc
Q 003931 360 PENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGS--LPACLR 437 (785)
Q Consensus 360 ~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~ 437 (785)
| .+ .++ +|+.+++++|+..+.. .+..+++|++|++++|.+++. .+..+.
T Consensus 323 p-~~-~l~-------------------------~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 373 (606)
T 3vq2_A 323 P-TL-DLP-------------------------FLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDL 373 (606)
T ss_dssp C-CC-CCS-------------------------SCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred c-cC-CCC-------------------------ccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhc
Confidence 3 12 333 5666666666444333 456788999999999999876 488899
Q ss_pred CCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeeecc-cchhcccccceeccccceeeeccCcchhccccCCe
Q 003931 438 NCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEIS-PDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGV 516 (785)
Q Consensus 438 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 516 (785)
.+++|++|++++|.+.+. +..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+..+++|+.
T Consensus 374 ~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 452 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNT 452 (606)
T ss_dssp CCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCE
T ss_pred cCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCE
Confidence 999999999999999874 4889999999999999999998877 68999999999999999999999999999999999
Q ss_pred eecccCcccc-CCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCc
Q 003931 517 LSLDSNELTG-KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHND 595 (785)
Q Consensus 517 L~Ls~n~l~~-~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~ 595 (785)
|++++|.+++ .+|..++.+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|+
T Consensus 453 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred EECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 9999999997 478899999999999999999999889999999999999999999999889999999999999999999
Q ss_pred CcccCCcccchhh-hhhheeecccccCCCCCC
Q 003931 596 LSGEIPSNLGNLF-VLQYMLDLSSNSLSGTIP 626 (785)
Q Consensus 596 l~~~~p~~~~~l~-~l~~~l~ls~n~l~~~~~ 626 (785)
++ .+|..+..+. .+++ +++++|.+....+
T Consensus 533 l~-~~p~~~~~l~~~L~~-l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 533 IE-TSKGILQHFPKSLAF-FNLTNNSVACICE 562 (606)
T ss_dssp CC-CEESCGGGSCTTCCE-EECCSCCCCCSST
T ss_pred Cc-ccCHhHhhhcccCcE-EEccCCCcccCCc
Confidence 98 6777788886 4776 9999999975444
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-52 Score=491.24 Aligned_cols=534 Identities=22% Similarity=0.212 Sum_probs=290.2
Q ss_pred EEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCc-ccCCccCCCCCCccEEECCCC
Q 003931 9 YLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELT-LEFPSFILTCRNLTYLDLSLN 87 (785)
Q Consensus 9 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n 87 (785)
..+.++++++.++. -.+++++|+|++|.|+.+.+.+|.++++|++|++++|... .+.|..|.++++|++|+|++|
T Consensus 8 ~~dcs~~~L~~vP~----lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCCCS----SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCCCCC----CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 44555555554332 2345666666666666555555666666666666655322 233555555555555555555
Q ss_pred CCcccCChhhhcCCCCCcEEECCCCCCcccCCcc--ccCCCCCcEEEcCCCcccccCC-cCCCCCCCCCEEEcccCcccc
Q 003931 88 KLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN--VSKLSNLIDLRLATNKFSGPIP-GDIGSMSNLQLVELFNNSFTG 164 (785)
Q Consensus 88 ~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~~~~ 164 (785)
.+++..|. .|.++++|++|+|++|.+++..+.. |.++++|++|++++|.+++..+ ..|+++++|++|++++|.+.+
T Consensus 84 ~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 84 KIYFLHPD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCEECTT-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred cCcccCHh-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 55533232 3355555555555555555433332 5555555555555555554433 345555555555555555555
Q ss_pred cCCccccCC--CCCCEEEcccCcCcccCCccccCCcc------cCeeeccccccccCCchhccCC---CCCCEEEccCCC
Q 003931 165 QIPSSLGQL--KNLQHLDLRMNALNYTIPPELGLCTN------LSYLALAVNQLSGGLPLSLSNL---SKLNDLGLSDNF 233 (785)
Q Consensus 165 ~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~------L~~L~l~~n~i~~~~~~~l~~l---~~L~~L~L~~n~ 233 (785)
..+..+..+ ++|+.|+++.|.+.+..+..++.+++ |+.|++++|.+++..+..+... .+++.+.++.+.
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~ 242 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSC
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccc
Confidence 555555444 45555555555555544444444433 4555555554444443333221 334444443222
Q ss_pred CccccCccccCCCCCCCEEEeecCcCcccCCccCcCC--CCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccC
Q 003931 234 LSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLL--TKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTI 311 (785)
Q Consensus 234 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~ 311 (785)
..... ..+.+.+..+..|..+ ++|+.|++++|.+.+..|..|..+++|+.|++++|++++..
T Consensus 243 ~~~~~----------------~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 306 (844)
T 3j0a_A 243 MGAGF----------------GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306 (844)
T ss_dssp CBCSS----------------SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC
T ss_pred ccccc----------------cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC
Confidence 11000 0111222222223332 45666666666666666666666666666666666666666
Q ss_pred CccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCC
Q 003931 312 PPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFS 391 (785)
Q Consensus 312 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~ 391 (785)
|..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++... .
T Consensus 307 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~------~ 380 (844)
T 3j0a_A 307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF------I 380 (844)
T ss_dssp TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS------C
T ss_pred hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC------C
Confidence 6666666666666666666665556666666666666666666665555555666666666666665543111 2
Q ss_pred CCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEc
Q 003931 392 PSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRL 471 (785)
Q Consensus 392 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 471 (785)
++++.+++++|++. .+|.. ...++.+++++|.+.+.... ..+..+++|+.|++
T Consensus 381 ~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~-----------------------~~~~~l~~L~~L~L 433 (844)
T 3j0a_A 381 PSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDIL-----------------------YFLLRVPHLQILIL 433 (844)
T ss_dssp CSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTH-----------------------HHHTTCTTCCEEEE
T ss_pred CCcchhccCCCCcc-ccccc---ccccceeecccCccccCchh-----------------------hhhhcCCccceeeC
Confidence 25555555555554 22221 23455555555555433211 11233444555555
Q ss_pred cCCeeeeeccc-chhcccccceeccccceee-----eccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccC
Q 003931 472 SGNQFVGEISP-DWGECRNLSNLQLDRNRIS-----GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSN 545 (785)
Q Consensus 472 s~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~ 545 (785)
++|++.+..+. .+..+++|+.|++++|.++ +..+..|.++++|+.|+|++|.+++..|..|..+++|+.|++++
T Consensus 434 s~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 513 (844)
T 3j0a_A 434 NQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNS 513 (844)
T ss_dssp ESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEES
T ss_pred CCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCC
Confidence 55544433222 2334555566666666554 23345566777777777777777777777777777777777777
Q ss_pred CcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCC
Q 003931 546 NHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIP 601 (785)
Q Consensus 546 n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 601 (785)
|++++..+..+. ++|++|++++|++++..|..+ .+|+.+++++|++....+
T Consensus 514 N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 514 NRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred CCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 777765555554 677777777777777776654 367777888877765443
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-51 Score=486.33 Aligned_cols=511 Identities=23% Similarity=0.233 Sum_probs=345.2
Q ss_pred CCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCC-CCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEE
Q 003931 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGN-FLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL 82 (785)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 82 (785)
.+++++|+|++|.|++..+..|.++++|++|++++| .+..+.+.+|.++++|++|+|++|.+.+..|..|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 468999999999999999999999999999999999 4566778899999999999999999999999999999999999
Q ss_pred ECCCCCCcccCChh-hhcCCCCCcEEECCCCCCcccCC-ccccCCCCCcEEEcCCCcccccCCcCCCCC--CCCCEEEcc
Q 003931 83 DLSLNKLSGLIPER-LFTNLGKLEYLNLTENQFQGKLS-PNVSKLSNLIDLRLATNKFSGPIPGDIGSM--SNLQLVELF 158 (785)
Q Consensus 83 ~Ls~n~i~~~~~~~-~f~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~L~ 158 (785)
++++|.+++.+|.. .|.++++|++|+|++|.+++..+ ..|.++++|++|++++|.+++..+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999998755543 56999999999999999997755 579999999999999999998888888877 899999999
Q ss_pred cCcccccCCccccCCCC------CCEEEcccCcCcccCCccccCC---cccCeeecccccc---------ccCCchhccC
Q 003931 159 NNSFTGQIPSSLGQLKN------LQHLDLRMNALNYTIPPELGLC---TNLSYLALAVNQL---------SGGLPLSLSN 220 (785)
Q Consensus 159 ~n~~~~~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~n~i---------~~~~~~~l~~ 220 (785)
+|.+.+..|..++.+++ |++|++++|.+++..+..+... +.++.+.++.+.. .+..+..|..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 99999888887777666 9999999999988887776543 5677787764332 2222233333
Q ss_pred C--CCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCC
Q 003931 221 L--SKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLE 298 (785)
Q Consensus 221 l--~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 298 (785)
+ ++|+.|++++|.+.+..+ ..++.+++|+.|++++|.+.+..|..|..+++|++|++++|.+++..|..|..+++|+
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 341 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNS-RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVA 341 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECS-CCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCC
T ss_pred cccCCccEEECCCCcccccCh-hhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCC
Confidence 2 455556665555553322 2255555555555555555555555555555555555555555555555555555555
Q ss_pred EEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCcc
Q 003931 299 NLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNN 378 (785)
Q Consensus 299 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~ 378 (785)
.|++++|.+.+..+..|..+++|++|++++|.+++. ..+++|+.+++++|+
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~------------------------ 392 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNK------------------------ 392 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCC------------------------
T ss_pred EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCC------------------------
Confidence 555555555554444555555555555555555421 124444555555444
Q ss_pred ccccCCcccccCCCCccEEEcccccceecCC-ccccCCCCCcEEEccCCCCcccCCc-cccCCCCCcEEEcccCcccccc
Q 003931 379 FSGSIPGDFGKFSPSLINVSFSNNSFSGELP-HELCSGFALEELTVNGNNFTGSLPA-CLRNCSNLNRVRFDGNQFTGNI 456 (785)
Q Consensus 379 l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~ 456 (785)
++ .+|.. ...++.+++++|.+.+... ..+..+++|+.|++++|.+++..+. .+..+++|+.|++++|.+....
T Consensus 393 l~-~l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~ 467 (844)
T 3j0a_A 393 LV-TLPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAW 467 (844)
T ss_dssp CC-CCCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSC
T ss_pred cc-ccccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccccc
Confidence 44 22221 2367777777777765422 2344677888888888888765433 3455677777777777765322
Q ss_pred CcccCCCCCCcEEEccCCeeeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccCC
Q 003931 457 TKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLV 536 (785)
Q Consensus 457 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 536 (785)
+. +..+..|..+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..+. +
T Consensus 468 ~~-------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~ 526 (844)
T 3j0a_A 468 ET-------------------ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--A 526 (844)
T ss_dssp CS-------------------CCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--S
T ss_pred cc-------------------ccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--c
Confidence 11 12223344455555555555555555555555555555555555555544444443 4
Q ss_pred CCCeecccCCcccCcCCcccccCCCCCeEecCCCcCc
Q 003931 537 KLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLT 573 (785)
Q Consensus 537 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 573 (785)
+|+.|++++|++++..|..+ .+|+.+++++|.+.
T Consensus 527 ~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 527 NLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFI 560 (844)
T ss_dssp CCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCC
T ss_pred cccEEECCCCcCCCCChhHh---CCcCEEEecCCCcc
Confidence 55555555555555555443 24555555555554
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-48 Score=444.33 Aligned_cols=511 Identities=20% Similarity=0.196 Sum_probs=331.0
Q ss_pred CcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCC
Q 003931 7 LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL 86 (785)
Q Consensus 7 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 86 (785)
.+.++-++.+++.++. .+ .+++++|++++|.++.+.+.+|.++++|++|++++|.++++.+..|.++++|++|++++
T Consensus 9 ~~~~~c~~~~l~~ip~-~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 9 NITYQCMELNFYKIPD-NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TTEEECCSSCCSSCCS-SS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEeCCCCccccCC-Cc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 3456666666664433 23 24678888888888777777788888888888888887777777777888888888888
Q ss_pred CCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccc-cCCcCCCCCCCCCEEEcccCccccc
Q 003931 87 NKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSG-PIPGDIGSMSNLQLVELFNNSFTGQ 165 (785)
Q Consensus 87 n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~L~~n~~~~~ 165 (785)
|.++ .++...|.++++|++|++++|.+++..+..+.++++|++|++++|.+++ .+|..|+++++|++|++++|.+.+.
T Consensus 86 n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 86 NPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred CcCC-ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 8777 3555556778888888888887776665567777777777777777775 3567777777777777777777766
Q ss_pred CCccccCCCCC----CEEEcccCcCcccCCccccCCcccCeeecccccccc-CCchhccCCCCCCEEEccCCCCcc----
Q 003931 166 IPSSLGQLKNL----QHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSG-GLPLSLSNLSKLNDLGLSDNFLSG---- 236 (785)
Q Consensus 166 ~~~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~---- 236 (785)
.+..++.+++| ++|++++|.+.+..+..+... +|+.|++++|.... ..+..+..++.++.+.+....+..
T Consensus 165 ~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 243 (570)
T 2z63_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243 (570)
T ss_dssp CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred cHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence 66666666666 677777777776666666554 67777777664332 234455566666555544322210
Q ss_pred -ccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCc-cccccCChhccCCCCCCEEECcCCcccccCCcc
Q 003931 237 -EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRN-NFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPT 314 (785)
Q Consensus 237 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 314 (785)
.++...+..+++ + .++.++++++ .+.+..|..+..+++|+.|++++|.++ .+|..
T Consensus 244 ~~~~~~~~~~l~~---------------------l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~ 300 (570)
T 2z63_A 244 EKFDKSALEGLCN---------------------L-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF 300 (570)
T ss_dssp EECCTTTTGGGGG---------------------S-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBC
T ss_pred hhcchhhhccccc---------------------c-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhh
Confidence 111111111111 1 1344444444 444445555555555555555555554 34444
Q ss_pred CcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCc
Q 003931 315 LWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSL 394 (785)
Q Consensus 315 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L 394 (785)
+..+ +|++|++++|.+. .+|. ..+++|+.+++++|.+.+..+. ..++ +|
T Consensus 301 ~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~-------------------------~L 349 (570)
T 2z63_A 301 SYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLP-------------------------SL 349 (570)
T ss_dssp CSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCT-------------------------TC
T ss_pred hccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCC-------------------------CC
Confidence 4444 5555555555554 2332 2444444444444444333222 2222 34
Q ss_pred cEEEcccccceecC--CccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccC-cccCCCCCCcEEEc
Q 003931 395 INVSFSNNSFSGEL--PHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNIT-KAFGVHPRLDFIRL 471 (785)
Q Consensus 395 ~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~L 471 (785)
+.|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..+..+++|+.|++
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred CEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 44444444433322 34455556666666666666654443 6677777777777777776654 46677788888888
Q ss_pred cCCeeeeecccchhcccccceeccccceee-eccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccC
Q 003931 472 SGNQFVGEISPDWGECRNLSNLQLDRNRIS-GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTG 550 (785)
Q Consensus 472 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 550 (785)
++|.+.+..+..+..+++|+.|++++|.+. +.+|..+..+++|+.|++++|.+++..|..++.+++|++|++++|++++
T Consensus 429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 888887777777888888888888888886 5677788888888888888888887778888888888888888888887
Q ss_pred cCCcccccCCCCCeEecCCCcCccCCC
Q 003931 551 EIPKSISNLTELAYLDLSNNKLTGDVP 577 (785)
Q Consensus 551 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p 577 (785)
..|..+..+++|++|++++|.+++..|
T Consensus 509 ~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 509 VPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCHHHhhcccCCcEEEecCCcccCCCc
Confidence 777778888888888888888887655
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-48 Score=444.84 Aligned_cols=510 Identities=19% Similarity=0.199 Sum_probs=366.2
Q ss_pred cEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCC
Q 003931 56 THLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLAT 135 (785)
Q Consensus 56 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 135 (785)
++++.++..++.+ |..+. +++++|++++|.++ .++...|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 10 ~~~~c~~~~l~~i-p~~l~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 10 ITYQCMELNFYKI-PDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TEEECCSSCCSSC-CSSSC--SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEeCCCCcccc-CCCcc--ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 4566666666533 33332 46888888888887 45555568888888888888888877777888888888888888
Q ss_pred CcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcc-cCCccccCCcccCeeeccccccccCC
Q 003931 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY-TIPPELGLCTNLSYLALAVNQLSGGL 214 (785)
Q Consensus 136 n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~~~ 214 (785)
|++++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+++ .+|..++++++|++|++++|.+++..
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 88887777788888888888888888876655568888888888888888775 35777888888888888888887776
Q ss_pred chhccCCCCC----CEEEccCCCCccccCccccCCCCCCCEEEeecCcCcc-cCCccCcCCCCCcEEECcCccccc----
Q 003931 215 PLSLSNLSKL----NDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG-NIPPEIGLLTKLQYLFLYRNNFSG---- 285 (785)
Q Consensus 215 ~~~l~~l~~L----~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~---- 285 (785)
+..++.+++| +.+++++|.+.+..+ ..+... +|+.|++++|.... .++..+..++.++...+....+..
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~-~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 243 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred HHHccchhccchhhhhcccCCCCceecCH-HHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence 7777777776 778888887774433 335444 67777777764321 233445556666655554332211
Q ss_pred --cCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccc-cccCCCCCCCCCCCCCCEEEccCCcCccccCcc
Q 003931 286 --PIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSN-NLSGTIPPEIGSMASLVAFDVNTNQLHGELPEN 362 (785)
Q Consensus 286 --~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~ 362 (785)
.....+..++++ .++.+++.++ .+.+..|..+..+++|+.+++++|.+. .+|..
T Consensus 244 ~~~~~~~~~~l~~l----------------------~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~ 300 (570)
T 2z63_A 244 EKFDKSALEGLCNL----------------------TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF 300 (570)
T ss_dssp EECCTTTTGGGGGS----------------------EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBC
T ss_pred hhcchhhhcccccc----------------------chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhh
Confidence 111111111111 1334444444 444444455555555555555555544 34444
Q ss_pred ccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccC--CccccCCC
Q 003931 363 ISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSL--PACLRNCS 440 (785)
Q Consensus 363 ~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~l~ 440 (785)
+..+ +|+.+++++|.+. .+|. ..+ ++++.+++++|.+.+..+. ..+++|++|++++|.+++.. +..+.+++
T Consensus 301 ~~~~-~L~~L~l~~n~~~-~l~~--~~l-~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 373 (570)
T 2z63_A 301 SYNF-GWQHLELVNCKFG-QFPT--LKL-KSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373 (570)
T ss_dssp CSCC-CCSEEEEESCBCS-SCCB--CBC-SSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCS
T ss_pred hccC-CccEEeeccCccc-ccCc--ccc-cccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccC
Confidence 4444 5555555555554 3333 122 3677777777776655544 56778999999999988654 67788899
Q ss_pred CCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeeecc-cchhcccccceeccccceeeeccCcchhccccCCeeec
Q 003931 441 NLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEIS-PDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSL 519 (785)
Q Consensus 441 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 519 (785)
+|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+.++++|+.|++
T Consensus 374 ~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 452 (570)
T 2z63_A 374 SLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 452 (570)
T ss_dssp CCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred ccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence 999999999998876665 8889999999999999887765 46888899999999999999888888899999999999
Q ss_pred ccCccc-cCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcc
Q 003931 520 DSNELT-GKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSG 598 (785)
Q Consensus 520 s~n~l~-~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 598 (785)
++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++
T Consensus 453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence 999987 5678888999999999999999988888888999999999999999998888888889999999999999987
Q ss_pred cCCc
Q 003931 599 EIPS 602 (785)
Q Consensus 599 ~~p~ 602 (785)
.+|.
T Consensus 533 ~~~~ 536 (570)
T 2z63_A 533 SCPR 536 (570)
T ss_dssp CTTT
T ss_pred CCcc
Confidence 7764
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-46 Score=426.81 Aligned_cols=489 Identities=18% Similarity=0.179 Sum_probs=298.7
Q ss_pred CCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEE
Q 003931 77 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVE 156 (785)
Q Consensus 77 ~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 156 (785)
+...+.+.+++.++ .+|..++ ++|++|++++|.+++..+..|.++++|++|++++|++++..|..|+++++|++|+
T Consensus 5 ~~~~~c~~~~~~l~-~ip~~~~---~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 5 DASGVCDGRSRSFT-SIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp CTTSEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCceEECCCCccc-cccccCC---CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 34445677888887 6787653 6788888888888887778888888888888888888877777888888888888
Q ss_pred cccCcccccCCccccCCCCCCEEEcccCcCcc-cCCccccCCcccCeeeccccccccCC-chhccCCCCCCEEEccCCCC
Q 003931 157 LFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY-TIPPELGLCTNLSYLALAVNQLSGGL-PLSLSNLSKLNDLGLSDNFL 234 (785)
Q Consensus 157 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~l~~l~~L~~L~L~~n~l 234 (785)
+++|.+.+..|..|+++++|++|++++|.+++ ..|..++.+++|++|++++|.+.+.+ +..+.++++|++|++++|.+
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcc
Confidence 88888887766678888888888888888775 24556777777777777777633333 34566666677777777766
Q ss_pred ccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccC--C-hhccCCCCCCEEECcCCcccccC
Q 003931 235 SGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPI--P-SEIEKLTSLENLDLSGNQLSGTI 311 (785)
Q Consensus 235 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--p-~~~~~l~~L~~L~Ls~n~l~~~~ 311 (785)
++.+|.. ++.+++|++|++++|.+....+..+..+++|++|++++|.+++.. | .....+++|+.|++++|.+++..
T Consensus 161 ~~~~~~~-l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 239 (549)
T 2z81_A 161 RNYQSQS-LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239 (549)
T ss_dssp CEECTTT-TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHH
T ss_pred cccChhh-hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhH
Confidence 6555544 666666666666666654322222344666666666666665431 1 11234556666666666665433
Q ss_pred C----ccCcCCCCCCEEEcccccccCCCC------CCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccc
Q 003931 312 P----PTLWNLTNLLSLQLFSNNLSGTIP------PEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSG 381 (785)
Q Consensus 312 p----~~l~~l~~L~~L~L~~n~l~~~~p------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~ 381 (785)
+ ..+..+++|+.+++++|.+.+... ..+..+++++.+++.++.+..... + .
T Consensus 240 ~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~-----------------~ 300 (549)
T 2z81_A 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL--F-----------------Y 300 (549)
T ss_dssp HHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG--S-----------------C
T ss_pred HHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhh--c-----------------c
Confidence 2 223445566666666666554211 112333444444444433221000 0 0
Q ss_pred cCCcccccCCCCccEEEcccccceecCCccc-cCCCCCcEEEccCCCCcccCC---ccccCCCCCcEEEcccCccccccC
Q 003931 382 SIPGDFGKFSPSLINVSFSNNSFSGELPHEL-CSGFALEELTVNGNNFTGSLP---ACLRNCSNLNRVRFDGNQFTGNIT 457 (785)
Q Consensus 382 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~ 457 (785)
.++.. ....++++.+++++|.+. .+|..+ ..+++|++|++++|.+.+..| ..++.+++|++|++++|++++..+
T Consensus 301 ~l~~~-~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 378 (549)
T 2z81_A 301 DLSTV-YSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK 378 (549)
T ss_dssp CCCHH-HHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH
T ss_pred cchhh-hhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc
Confidence 00000 111125566666666554 344443 345666666666666665442 235566666666666666655432
Q ss_pred --cccCCCCCCcEEEccCCeeeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccC
Q 003931 458 --KAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKL 535 (785)
Q Consensus 458 --~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l 535 (785)
..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|.+++ +|..+ .++|+.|++++|++++.+ ..+
T Consensus 379 ~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l 450 (549)
T 2z81_A 379 TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFL 450 (549)
T ss_dssp HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCC
T ss_pred chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccC
Confidence 34566666666666666666 345556666667777777766653 22222 246677777777766432 356
Q ss_pred CCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCC
Q 003931 536 VKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIP 601 (785)
Q Consensus 536 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 601 (785)
++|++|++++|+++ .+|. ...+++|++|++++|++++.+|..+..+++|+.|++++|++.+..|
T Consensus 451 ~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 451 PRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp TTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 66777777777776 4554 3556677777777777776666666777777777777777665543
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-47 Score=439.02 Aligned_cols=456 Identities=18% Similarity=0.266 Sum_probs=277.4
Q ss_pred CCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCC-----------CCCCCCEEEcccCcccccCCccc
Q 003931 102 GKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIG-----------SMSNLQLVELFNNSFTGQIPSSL 170 (785)
Q Consensus 102 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-----------~l~~L~~L~L~~n~~~~~~~~~l 170 (785)
.+++.|+|+++.+.|.+|..++++++|++|+|++|.+... +..++ .+..|+ ++++++.+.+.+|..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~-~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN-ERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDF 158 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGT-CCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGS
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccC-CccccccccccCchHHHHHHHH-hhHHHhhhccCchhhH
Confidence 3566666666666666666666666666666666654210 11111 022233 3444444433333332
Q ss_pred cCC-CCCCEEEcccCcCcccCCccccCCcccCeeecc--ccccccCCchhccCCCCCCEEEccCCCCccc----------
Q 003931 171 GQL-KNLQHLDLRMNALNYTIPPELGLCTNLSYLALA--VNQLSGGLPLSLSNLSKLNDLGLSDNFLSGE---------- 237 (785)
Q Consensus 171 ~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~--~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~---------- 237 (785)
..+ ..+..+++....+. ......++.+.+. .|++++ +|..++++++|++|++++|.+++.
T Consensus 159 ~~~~~~l~~~~l~~~~~~------~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 231 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIK------KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENEN 231 (636)
T ss_dssp CHHHHHHHHHCTTSCCCC------CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred HHHHHHHhhcCccccccc------cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccc
Confidence 210 01111111111110 0011122222222 466666 677777777777777777777764
Q ss_pred -------cCccccC--CCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCcc-ccc-cCChhccCC------CCCCEE
Q 003931 238 -------ISANLIG--NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNN-FSG-PIPSEIEKL------TSLENL 300 (785)
Q Consensus 238 -------~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l------~~L~~L 300 (785)
+|.. ++ ++++|++|++++|.+.+.+|..++.+++|++|++++|+ ++| .+|..++.+ ++|++|
T Consensus 232 ~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 232 SEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp SHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred cchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 6655 55 67777777777777777777777777777777777776 666 666666554 677777
Q ss_pred ECcCCcccccCCc--cCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCC-CcEEEecCc
Q 003931 301 DLSGNQLSGTIPP--TLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVK-LNKFSVFTN 377 (785)
Q Consensus 301 ~Ls~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~l~l~~n 377 (785)
++++|+++ .+|. .++.+++|++|++++|+++|.+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence 77777776 5665 66677777777777777766666 6666666667777666666 55555666665 666666666
Q ss_pred cccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCcccc-------CCCCCcEEEcccC
Q 003931 378 NFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLR-------NCSNLNRVRFDGN 450 (785)
Q Consensus 378 ~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~-------~l~~L~~L~l~~n 450 (785)
.++ .+|..+.... +.+|+.|++++|.+.+..|..+. .+++|++|++++|
T Consensus 388 ~l~-~lp~~~~~~~-----------------------l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 388 KLK-YIPNIFDAKS-----------------------VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443 (636)
T ss_dssp CCS-SCCSCCCTTC-----------------------SSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS
T ss_pred cCc-ccchhhhhcc-----------------------cCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC
Confidence 555 4444333221 11444445555554444444444 4455555666666
Q ss_pred ccccccCcccCCCCCCcEEEccCCeeeeecccchh-------cccccceeccccceeeeccCcchh--ccccCCeeeccc
Q 003931 451 QFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWG-------ECRNLSNLQLDRNRISGGIPAELG--NLTRLGVLSLDS 521 (785)
Q Consensus 451 ~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~ 521 (785)
+++...+..+..+++|+.|++++|++....+..+. .+++|+.|++++|.++ .+|..+. .+++|+.|++++
T Consensus 444 ~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~ 522 (636)
T 4eco_A 444 QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSY 522 (636)
T ss_dssp CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCS
T ss_pred ccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCC
Confidence 55544444444556666666666666532222222 2237788888888877 5666665 788888888888
Q ss_pred CccccCCCcccccCCCCCeecc------cCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCc
Q 003931 522 NELTGKIPTDLGKLVKLFNLNL------SNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHND 595 (785)
Q Consensus 522 n~l~~~~~~~l~~l~~L~~L~l------s~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~ 595 (785)
|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+++|++|++++|++ +.+|..+. ++|+.|++++|+
T Consensus 523 N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 523 NSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp SCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred CCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 88886 6777788888888888 56778888898899999999999999999 56777665 789999999998
Q ss_pred Cccc
Q 003931 596 LSGE 599 (785)
Q Consensus 596 l~~~ 599 (785)
+...
T Consensus 599 l~~~ 602 (636)
T 4eco_A 599 NISI 602 (636)
T ss_dssp TCEE
T ss_pred Cccc
Confidence 7643
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3e-46 Score=423.31 Aligned_cols=486 Identities=21% Similarity=0.198 Sum_probs=228.1
Q ss_pred EECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcC
Q 003931 107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 186 (785)
Q Consensus 107 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 186 (785)
.+.+++.++. +|..+. ++|++|++++|++++..|..|.++++|++|++++|.+.+..|.+|+++++|++|++++|.+
T Consensus 10 c~~~~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 4556666653 333332 4666666666666655556666666666666666666665556666666666666666666
Q ss_pred cccCCccccCCcccCeeecccccccc-CCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCc
Q 003931 187 NYTIPPELGLCTNLSYLALAVNQLSG-GLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPP 265 (785)
Q Consensus 187 ~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 265 (785)
++..+..++.+++|++|++++|.+++ ..|..++++++|++|++++|.+.+.++...++++++|++|++++|.+.+..|.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 65555556666666666666666554 23445555566666666665543445443455555555555555555555555
Q ss_pred cCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCC
Q 003931 266 EIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASL 345 (785)
Q Consensus 266 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 345 (785)
.++.+++|++|++++|.+....+..+..+++|++|++++|++++.... .......+++|
T Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---------------------~~~~~~~~~~L 225 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS---------------------PLPVDEVSSPM 225 (549)
T ss_dssp TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCC---------------------CCSSCCCCCCC
T ss_pred hhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccc---------------------ccchhhhhhcc
Confidence 555555555555555554422212223455555555555555432100 00111234445
Q ss_pred CEEEccCCcCccccCc----cccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEE
Q 003931 346 VAFDVNTNQLHGELPE----NISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEEL 421 (785)
Q Consensus 346 ~~L~l~~n~l~~~~~~----~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L 421 (785)
+.+++++|.+.+..+. .+..+.+++.+++++|.+.+...... .....+.....++.+
T Consensus 226 ~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~-------------------~~~~~~~~l~~L~~L 286 (549)
T 2z81_A 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNP-------------------SESDVVSELGKVETV 286 (549)
T ss_dssp CEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCC-------------------CTTTCCCCCTTCCEE
T ss_pred cceeccccccchhHHHHHHHHhhhhccccccccccccccccccccc-------------------cchhhhhhhcccccc
Confidence 5555555544433222 22334444444444444433110000 000111222334444
Q ss_pred EccCCCCccc-----CCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeeeccc---chhccccccee
Q 003931 422 TVNGNNFTGS-----LPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISP---DWGECRNLSNL 493 (785)
Q Consensus 422 ~l~~n~~~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L 493 (785)
++.++.+... .+..+...++|+++++++|.+.......+..+++|+.|++++|++.+..|. .++.+++|+.|
T Consensus 287 ~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L 366 (549)
T 2z81_A 287 TIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTL 366 (549)
T ss_dssp EEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEE
T ss_pred cccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEE
Confidence 4444333211 111122233444444444444322222223344455555555544443321 23444455555
Q ss_pred ccccceeeeccC--cchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCc
Q 003931 494 QLDRNRISGGIP--AELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNK 571 (785)
Q Consensus 494 ~L~~n~i~~~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~ 571 (785)
++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+ .++|++|++++|+
T Consensus 367 ~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~ 442 (549)
T 2z81_A 367 VLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNN 442 (549)
T ss_dssp ECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSC
T ss_pred EccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCC
Confidence 555555543321 23445555555555555555 34444555555555555555554 222222 1345555555555
Q ss_pred CccCCCccccccCCCcEEeCCCCcCcccCCcccchhhhhhheeecccccCCCCCCcccccCCCCceEeccCCcee
Q 003931 572 LTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGKLTSLEILNLSRNQLS 646 (785)
Q Consensus 572 l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~~~l~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 646 (785)
+++.+ ..+++|+.|++++|+++ .+|. ...+..++. +++++|.+++.+|..++.+++|++|++++|.+.
T Consensus 443 l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~-L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 443 LDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLV-MKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp CSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCE-EECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred hhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCE-EecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 55421 24445555555555554 3332 223333332 444444444444444444444444444444443
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7e-46 Score=416.97 Aligned_cols=460 Identities=21% Similarity=0.214 Sum_probs=261.1
Q ss_pred EEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCC
Q 003931 57 HLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATN 136 (785)
Q Consensus 57 ~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 136 (785)
+|++++|.++. +|..+. ++|++|++++|.++ .++...|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 4 ~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 4 LVDRSKNGLIH-VPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp EEECTTSCCSS-CCCSCC--TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred eEecCCCCccc-cccccc--ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 34444444442 222222 45555555555554 233333455555555555555555555555555556666666666
Q ss_pred cccccCCcCCCCCCCCCEEEcccCcccc-cCCccccCCCCCCEEEcccCcCcccCCccccCCccc--Ceeecccccc--c
Q 003931 137 KFSGPIPGDIGSMSNLQLVELFNNSFTG-QIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNL--SYLALAVNQL--S 211 (785)
Q Consensus 137 ~~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~i--~ 211 (785)
+++. +|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 5553 3332 55666666666666654 245566666666666666666654 234445555 6666666666 5
Q ss_pred cCCchhccCCC-CCCEEEccCCCCccccCccccCCCCCCCEEEeecCc-------CcccCCccCcCCCCCcEEECcCccc
Q 003931 212 GGLPLSLSNLS-KLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNS-------FMGNIPPEIGLLTKLQYLFLYRNNF 283 (785)
Q Consensus 212 ~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~l 283 (785)
+..|..+..+. +...+++++|.+.+.++...+.++++|+.+++++|. +.+.+| .++.+++|+.|++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 55555554443 223456666666666666556666777777777665 443333 455555555555555555
Q ss_pred cccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCC-----CCCCCCCEEEccCCcCccc
Q 003931 284 SGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI-----GSMASLVAFDVNTNQLHGE 358 (785)
Q Consensus 284 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~~ 358 (785)
++..+..+. ..+ ..++|++|++++|++++.+|..+ +.+++|+.++++.|.+ .
T Consensus 233 ~~~~~~~~~--------------------~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~ 289 (520)
T 2z7x_B 233 TWNSFIRIL--------------------QLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--G 289 (520)
T ss_dssp EHHHHHHHH--------------------HHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--C
T ss_pred CHHHHHHHH--------------------HHh-hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--e
Confidence 432211110 000 12345555555555554445444 5555555555555554 2
Q ss_pred cC-ccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCcccc
Q 003931 359 LP-ENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLR 437 (785)
Q Consensus 359 ~~-~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 437 (785)
+| ..+..+ +.. .+++.|++++|.+... . .+.
T Consensus 290 ~p~~~~~~~--------------------~~~--~~L~~L~l~~n~l~~~------------------------~--~~~ 321 (520)
T 2z7x_B 290 FPQSYIYEI--------------------FSN--MNIKNFTVSGTRMVHM------------------------L--CPS 321 (520)
T ss_dssp SCTHHHHHH--------------------HHT--CCCSEEEEESSCCCCC------------------------C--CCS
T ss_pred cchhhhhcc--------------------ccc--CceeEEEcCCCccccc------------------------c--chh
Confidence 22 122111 000 0233333333332211 0 012
Q ss_pred CCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeee--ecccchhcccccceeccccceeeeccCc-chhccccC
Q 003931 438 NCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVG--EISPDWGECRNLSNLQLDRNRISGGIPA-ELGNLTRL 514 (785)
Q Consensus 438 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L 514 (785)
.+++|++|++++|++++..+..++.+++|+.|++++|++.+ ..|..+..+++|+.|++++|.+++.+|. .+..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 34455555555555555455555555666666666666654 3345566677777777777777663443 36677788
Q ss_pred CeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCC
Q 003931 515 GVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHN 594 (785)
Q Consensus 515 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N 594 (785)
+.|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|+.|++++|
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 8888888888766665554 68888999999888 67777778899999999999988544444888899999999999
Q ss_pred cCcccCC
Q 003931 595 DLSGEIP 601 (785)
Q Consensus 595 ~l~~~~p 601 (785)
++.+..+
T Consensus 479 ~~~c~c~ 485 (520)
T 2z7x_B 479 PWDCSCP 485 (520)
T ss_dssp CBCCCHH
T ss_pred CCcccCC
Confidence 9886543
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.1e-47 Score=432.17 Aligned_cols=442 Identities=19% Similarity=0.228 Sum_probs=300.0
Q ss_pred CCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCC------cc------cCChhhhcCCCCCcEEECCCCCCcccCCc
Q 003931 53 PSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKL------SG------LIPERLFTNLGKLEYLNLTENQFQGKLSP 120 (785)
Q Consensus 53 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i------~~------~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~ 120 (785)
.+++.|+|+++.+.+.+|..++.+++|++|+|++|.+ .+ .+|... +..|+ ++++++.+.+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence 3566667777666666666666777777777766654 11 222222 22333 44444444433333
Q ss_pred cccC-------------------CCCCcEEEc--CCCcccccCCcCCCCCCCCCEEEcccCccccc--------------
Q 003931 121 NVSK-------------------LSNLIDLRL--ATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ-------------- 165 (785)
Q Consensus 121 ~~~~-------------------l~~L~~L~L--~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~-------------- 165 (785)
.+.. ...++.+.+ ..|++++ +|..++++++|++|++++|.+++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 3321 111222222 2567777 777888888888888888888874
Q ss_pred ---CCcccc--CCCCCCEEEcccCcCcccCCccccCCcccCeeeccccc-ccc-CCchhccCC------CCCCEEEccCC
Q 003931 166 ---IPSSLG--QLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQ-LSG-GLPLSLSNL------SKLNDLGLSDN 232 (785)
Q Consensus 166 ---~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-i~~-~~~~~l~~l------~~L~~L~L~~n 232 (785)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..++.+ ++|++|++++|
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n 315 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS
T ss_pred cccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC
Confidence 788887 88888888888888888888888888888888888887 877 777777765 88888888888
Q ss_pred CCccccCc-cccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCC-CCEEECcCCccccc
Q 003931 233 FLSGEISA-NLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTS-LENLDLSGNQLSGT 310 (785)
Q Consensus 233 ~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~Ls~n~l~~~ 310 (785)
.++ .+|. ..++++++|++|++++|.+.|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ .
T Consensus 316 ~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~ 391 (636)
T 4eco_A 316 NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-Y 391 (636)
T ss_dssp CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-c
Confidence 888 7776 237888888888888888887888 7888888888888888887 67777888888 888888888888 6
Q ss_pred CCccCcCCC--CCCEEEcccccccCCCCCCCC-------CCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccc
Q 003931 311 IPPTLWNLT--NLLSLQLFSNNLSGTIPPEIG-------SMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSG 381 (785)
Q Consensus 311 ~p~~l~~l~--~L~~L~L~~n~l~~~~p~~~~-------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~ 381 (785)
+|..+..++ +|++|++++|.+++.+|..+. .+++|+.|++++|.+....+..+..+++|+.|++++|+++
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~- 470 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT- 470 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-
T ss_pred cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-
Confidence 777776654 788888888888888887777 6778888888888887433334555777777777777777
Q ss_pred cCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCcccc--CCCCCcEEEcccCccccccCcc
Q 003931 382 SIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLR--NCSNLNRVRFDGNQFTGNITKA 459 (785)
Q Consensus 382 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~ 459 (785)
.+|........ ..+..+.+|+.|++++|.++ .+|..+. .+++|++|++++|++++ +|..
T Consensus 471 ~i~~~~~~~~~-----------------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~ 531 (636)
T 4eco_A 471 EIPKNSLKDEN-----------------ENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ 531 (636)
T ss_dssp BCCSSSSEETT-----------------EECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG
T ss_pred CcCHHHhcccc-----------------ccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChh
Confidence 45543332211 00011114444444444444 3333333 45555555555555554 4444
Q ss_pred cCCCCCCcEEEc------cCCeeeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccCcccc
Q 003931 460 FGVHPRLDFIRL------SGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTG 526 (785)
Q Consensus 460 ~~~~~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~ 526 (785)
+..+++|+.|++ ++|++.+.+|..+..+++|+.|++++|.+ +.+|..+. ++|+.|++++|++..
T Consensus 532 ~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp GGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred hhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 445555555555 56777777888888888888888888888 46676654 788888888887764
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-45 Score=414.14 Aligned_cols=453 Identities=21% Similarity=0.222 Sum_probs=364.6
Q ss_pred cEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCC
Q 003931 8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLN 87 (785)
Q Consensus 8 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n 87 (785)
++|++++|+++.+ |..+. ++|++|++++|.++.+.+.+|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~i-p~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHV-PKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSC-CCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcccc-ccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 6899999999965 44444 89999999999999999899999999999999999999999999999999999999999
Q ss_pred CCcccCChhhhcCCCCCcEEECCCCCCcc-cCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCC--CEEEcccCcc--
Q 003931 88 KLSGLIPERLFTNLGKLEYLNLTENQFQG-KLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNL--QLVELFNNSF-- 162 (785)
Q Consensus 88 ~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L--~~L~L~~n~~-- 162 (785)
.++ .+|.. .+++|++|++++|.+++ ..|..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+
T Consensus 80 ~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 80 KLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp CCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred cee-ecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 998 67764 79999999999999997 467899999999999999999986 457778888 9999999999
Q ss_pred cccCCccccCCC-CCCEEEcccCcCcccCC-ccccCCcccCeeeccccc-------cccCCchhccCCCCCCEEEccCCC
Q 003931 163 TGQIPSSLGQLK-NLQHLDLRMNALNYTIP-PELGLCTNLSYLALAVNQ-------LSGGLPLSLSNLSKLNDLGLSDNF 233 (785)
Q Consensus 163 ~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-------i~~~~~~~l~~l~~L~~L~L~~n~ 233 (785)
.+..|..+..+. +...+++++|.+.+.++ ..+..+++|+.+++++|. +.+.++ .++.+++|+.|++++|.
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence 778888877765 34467888888776555 457789999999999997 666555 78899999999999998
Q ss_pred CccccCccccC--CCCCCCEEEeecCcCcccCCccC-----cCCCCCcEEECcCccccccCC-hhccCC---CCCCEEEC
Q 003931 234 LSGEISANLIG--NWTELESLQIQNNSFMGNIPPEI-----GLLTKLQYLFLYRNNFSGPIP-SEIEKL---TSLENLDL 302 (785)
Q Consensus 234 l~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~p-~~~~~l---~~L~~L~L 302 (785)
+.+..+..... ..++|++|++++|.+.+.+|..+ +.++.|+.+++++|.+ .+| .++..+ .+|+.|++
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence 87643332111 24689999999999999999988 8999999999999998 455 555544 78999999
Q ss_pred cCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcc--ccCccccccCCCcEEEecCcccc
Q 003931 303 SGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHG--ELPENISRLVKLNKFSVFTNNFS 380 (785)
Q Consensus 303 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~n~l~ 380 (785)
++|.+.+.. .+..+++|++|++++|++++..|..++.+++|++|++++|++.+ .+|..+..+++|+.|++++|.++
T Consensus 310 ~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~ 387 (520)
T 2z7x_B 310 SGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387 (520)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCB
T ss_pred CCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCC
Confidence 999987542 13688999999999999999899999999999999999999987 56677888899999999988888
Q ss_pred ccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCccc
Q 003931 381 GSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAF 460 (785)
Q Consensus 381 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 460 (785)
+.+|.......++|+.|++++|++++..|..+. .+|+.|++++|.++ .+|..+..+++|++|++++|++++..+..+
T Consensus 388 ~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~ 464 (520)
T 2z7x_B 388 YDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIF 464 (520)
T ss_dssp CCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHh
Confidence 766654333334777777777777766555443 56777777777766 455555566666666666666664444445
Q ss_pred CCCCCCcEEEccCCeeee
Q 003931 461 GVHPRLDFIRLSGNQFVG 478 (785)
Q Consensus 461 ~~~~~L~~L~Ls~n~l~~ 478 (785)
..+++|+.|++++|++.+
T Consensus 465 ~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 465 DRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TTCTTCCEEECCSSCBCC
T ss_pred ccCCcccEEECcCCCCcc
Confidence 666666666666666654
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=7.8e-44 Score=411.59 Aligned_cols=530 Identities=21% Similarity=0.191 Sum_probs=322.1
Q ss_pred EEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCC
Q 003931 33 YLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTEN 112 (785)
Q Consensus 33 ~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n 112 (785)
+.+.++-.++.++.+ +. +++++|+|++|.|+.+.+..|.++++|++|+|++|+|+ .+|...|.++++|++|+|++|
T Consensus 35 ~~~c~~~~l~~vP~~-lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N 110 (635)
T 4g8a_A 35 TYQCMELNFYKIPDN-LP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 110 (635)
T ss_dssp EEECTTSCCSSCCSS-SC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCCcCccCCC-CC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCC
Confidence 344444445544421 11 25566666666666555555666666666666666665 345555566666666666666
Q ss_pred CCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccccc-CCccccCCCCCCEEEcccCcCcccCC
Q 003931 113 QFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ-IPSSLGQLKNLQHLDLRMNALNYTIP 191 (785)
Q Consensus 113 ~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~ 191 (785)
++++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+.+. .|..++.+++|++|++++|.+++..+
T Consensus 111 ~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 111 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 66655555566666666666666666555555566666666666666665532 34555566666666666666665555
Q ss_pred ccccCCcccC----eeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCc------c
Q 003931 192 PELGLCTNLS----YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFM------G 261 (785)
Q Consensus 192 ~~~~~l~~L~----~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~------~ 261 (785)
..+..+.+++ .++++.|.++...+..+ ....++.+++.+|.....+....+..+..++...+..+... .
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred ccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 5554443332 44555555554333322 22344556666655544444444555555555554432211 1
Q ss_pred cCCccCcCCCCCcEEECcCcccc---ccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCC
Q 003931 262 NIPPEIGLLTKLQYLFLYRNNFS---GPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPE 338 (785)
Q Consensus 262 ~~~~~~~~l~~L~~L~L~~n~l~---~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 338 (785)
.....+..+..+....+..+... ...+..+..+.+++.+++.++.+.... .+.....|+.|++.+|.+.+..+
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-- 345 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT-- 345 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC--
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc--
Confidence 12222333344444444333221 122333445556666666666555332 24445566666666666553322
Q ss_pred CCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccce--ecCCccccCCC
Q 003931 339 IGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFS--GELPHELCSGF 416 (785)
Q Consensus 339 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~ 416 (785)
..+..|+.+++..|...... ....++ +++.+++++|.+. +..+..+....
T Consensus 346 -~~l~~L~~l~l~~n~~~~~~--~~~~l~-------------------------~L~~L~ls~n~l~~~~~~~~~~~~~~ 397 (635)
T 4g8a_A 346 -LKLKSLKRLTFTSNKGGNAF--SEVDLP-------------------------SLEFLDLSRNGLSFKGCCSQSDFGTI 397 (635)
T ss_dssp -CBCTTCCEEEEESCCSCCBC--CCCBCT-------------------------TCCEEECCSSCCBEEEECCHHHHSCS
T ss_pred -ccchhhhhcccccccCCCCc--cccccc-------------------------ccccchhhccccccccccccchhhhh
Confidence 23445555555555443221 112233 3444444444332 22344445555
Q ss_pred CCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccC-cccCCCCCCcEEEccCCeeeeecccchhcccccceecc
Q 003931 417 ALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNIT-KAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQL 495 (785)
Q Consensus 417 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 495 (785)
+++.+++..+..... +..+..+++|+.+++.++......+ ..|..+++++.++++.|.+.+..+..+..+++++.|++
T Consensus 398 ~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~L 476 (635)
T 4g8a_A 398 SLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 476 (635)
T ss_dssp CCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred hhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence 666777766665543 3456667778888877776655433 55677888888888888888888888888888888888
Q ss_pred ccceee-eccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCcc
Q 003931 496 DRNRIS-GGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTG 574 (785)
Q Consensus 496 ~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 574 (785)
++|.+. +..|..|..+++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|..+++|++|++++|++++
T Consensus 477 s~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 477 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred hhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 888754 4567888889999999999999998888889999999999999999998888889999999999999999999
Q ss_pred CCCcccccc-CCCcEEeCCCCcCcccC
Q 003931 575 DVPQELGRF-DKLLSLNLSHNDLSGEI 600 (785)
Q Consensus 575 ~~p~~l~~l-~~L~~L~ls~N~l~~~~ 600 (785)
..|..+..+ ++|+.|++++|++....
T Consensus 557 ~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 557 SKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp CCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 888888887 68999999999987543
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.6e-45 Score=424.08 Aligned_cols=393 Identities=18% Similarity=0.258 Sum_probs=259.0
Q ss_pred ccCeeeccc--cccccCCchhccCCCCCCEEEccCCCCcc-----------------ccCccccC--CCCCCCEEEeecC
Q 003931 199 NLSYLALAV--NQLSGGLPLSLSNLSKLNDLGLSDNFLSG-----------------EISANLIG--NWTELESLQIQNN 257 (785)
Q Consensus 199 ~L~~L~l~~--n~i~~~~~~~l~~l~~L~~L~L~~n~l~~-----------------~~~~~~~~--~l~~L~~L~L~~n 257 (785)
.++.+.+.. |.+++ +|..++++++|++|+|++|.+++ .+|.. ++ ++++|++|++++|
T Consensus 424 ~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N 501 (876)
T 4ecn_A 424 SLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE-LSWSNLKDLTDVELYNC 501 (876)
T ss_dssp CCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEESC
T ss_pred chhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh-hhhccCCCCCEEECcCC
Confidence 344444443 77776 77788888888888888888886 26666 45 7888888888888
Q ss_pred cCcccCCccCcCCCCCcEEECcCcc-ccc-cCChhccCCC-------CCCEEECcCCcccccCCc--cCcCCCCCCEEEc
Q 003931 258 SFMGNIPPEIGLLTKLQYLFLYRNN-FSG-PIPSEIEKLT-------SLENLDLSGNQLSGTIPP--TLWNLTNLLSLQL 326 (785)
Q Consensus 258 ~l~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~L 326 (785)
.+.+.+|..++.+++|++|++++|+ +++ .+|..++.++ +|+.|++++|.++ .+|. .++.+++|++|++
T Consensus 502 ~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~L 580 (876)
T 4ecn_A 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDC 580 (876)
T ss_dssp TTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEEC
T ss_pred CCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEEC
Confidence 8888888888888888888888887 776 6776665544 8888888888887 6776 7788888888888
Q ss_pred ccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCC-CcEEEecCccccccCCcccccCC-CCccEEEcccccc
Q 003931 327 FSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVK-LNKFSVFTNNFSGSIPGDFGKFS-PSLINVSFSNNSF 404 (785)
Q Consensus 327 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~l~l~~n~l~~~~~~~~~~~~-~~L~~L~l~~n~l 404 (785)
++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+.... ++|+.|++++|.+
T Consensus 581 s~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 581 VHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp TTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred CCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcC
Confidence 888877 666 7777888888888888877 67777777777 777777777776 5565554432 2366666666666
Q ss_pred eecCCcccc-----CCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeee
Q 003931 405 SGELPHELC-----SGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGE 479 (785)
Q Consensus 405 ~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 479 (785)
.+.+|...+ ...+|+.|++++|.+....+..+..+++|+.|++++|++.......+....
T Consensus 657 ~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~--------------- 721 (876)
T 4ecn_A 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD--------------- 721 (876)
T ss_dssp TTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT---------------
T ss_pred CCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc---------------
Confidence 654442211 122455555555555432222233444455555554444422222221110
Q ss_pred cccchhcccccceeccccceeeeccCcchh--ccccCCeeecccCccccCCCcccccCCCCCeecccC------CcccCc
Q 003931 480 ISPDWGECRNLSNLQLDRNRISGGIPAELG--NLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSN------NHLTGE 551 (785)
Q Consensus 480 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~------n~l~~~ 551 (785)
+.+..+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|++++ |++.+.
T Consensus 722 --~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 722 --GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp --SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred --ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccccc
Confidence 00112336666666666666 4555554 66667777777777665 566666677777776655 778888
Q ss_pred CCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCCcccchhhhhhheeecccccC
Q 003931 552 IPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSL 621 (785)
Q Consensus 552 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~~~l~ls~n~l 621 (785)
+|..+..+++|++|++++|++ +.+|..+. ++|+.|++++|++....+..+........ ..+++|.+
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~-~~L~~n~~ 863 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGM-YVLLYDKT 863 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTC-CEEECCTT
T ss_pred ChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchh-eeecCCCc
Confidence 888888899999999999988 57777665 58899999999887665555544443332 45555544
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.9e-45 Score=421.71 Aligned_cols=390 Identities=21% Similarity=0.235 Sum_probs=235.4
Q ss_pred CcccccCCcCCCCCCCCCEEEcccCcccc-----------------cCCcccc--CCCCCCEEEcccCcCcccCCccccC
Q 003931 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTG-----------------QIPSSLG--QLKNLQHLDLRMNALNYTIPPELGL 196 (785)
Q Consensus 136 n~~~~~~~~~l~~l~~L~~L~L~~n~~~~-----------------~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~ 196 (785)
|.+++ +|..|+++++|++|+|++|.+++ .+|..++ ++++|++|++++|.+.+.+|..++.
T Consensus 435 N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred Ccccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 55555 55566666666666666666665 2555555 6666666666666666666666666
Q ss_pred CcccCeeeccccc-ccc-CCchhccCCC-------CCCEEEccCCCCccccCc-cccCCCCCCCEEEeecCcCcccCCcc
Q 003931 197 CTNLSYLALAVNQ-LSG-GLPLSLSNLS-------KLNDLGLSDNFLSGEISA-NLIGNWTELESLQIQNNSFMGNIPPE 266 (785)
Q Consensus 197 l~~L~~L~l~~n~-i~~-~~~~~l~~l~-------~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 266 (785)
+++|+.|++++|+ +++ .+|..++.++ +|++|++++|.++ .+|. ..++++++|+.|++++|.+. .+| .
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~ 590 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A 590 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h
Confidence 6666666666665 555 4555444333 6666666666665 5554 12556666666666666665 455 5
Q ss_pred CcCCCCCcEEECcCccccccCChhccCCCC-CCEEECcCCcccccCCccCcCCCC--CCEEEcccccccCCCCCCC---C
Q 003931 267 IGLLTKLQYLFLYRNNFSGPIPSEIEKLTS-LENLDLSGNQLSGTIPPTLWNLTN--LLSLQLFSNNLSGTIPPEI---G 340 (785)
Q Consensus 267 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~-L~~L~Ls~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~~~~p~~~---~ 340 (785)
++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..++. |+.|++++|++++.+|... +
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~ 668 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT
T ss_pred hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc
Confidence 666666666666666665 55555666665 666666666665 45555554433 6666666666655443211 1
Q ss_pred --CCCCCCEEEccCCcCccccCccc-cccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCC
Q 003931 341 --SMASLVAFDVNTNQLHGELPENI-SRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFA 417 (785)
Q Consensus 341 --~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 417 (785)
.+++|+.|++++|.+. .+|..+ ..+++|+.|++++|+++ .+|..+..... ....++++
T Consensus 669 ~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~-----------------~~l~nl~~ 729 (876)
T 4ecn_A 669 DYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKD-----------------GNYKNTYL 729 (876)
T ss_dssp TCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTT-----------------SCCTTGGG
T ss_pred cccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccc-----------------ccccccCC
Confidence 2235555555555555 233322 24444444444444444 23322211110 00111227
Q ss_pred CcEEEccCCCCcccCCcccc--CCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeeecccchhcccccceecc
Q 003931 418 LEELTVNGNNFTGSLPACLR--NCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQL 495 (785)
Q Consensus 418 L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 495 (785)
|+.|++++|.++ .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++++|+ ++
T Consensus 730 L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~------------------~l 789 (876)
T 4ecn_A 730 LTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR------------------DA 789 (876)
T ss_dssp CCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB------------------CT
T ss_pred ccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC------------------Cc
Confidence 888888888887 5666665 78888888888888877 56677778888888887765 45
Q ss_pred ccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCc
Q 003931 496 DRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLT 573 (785)
Q Consensus 496 ~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 573 (785)
++|.+.+.+|..+..+++|+.|+|++|.+ +.+|..+. ++|+.|++++|++....+..+.....+..+.+.+|+..
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence 66777777777777788888888888887 46666654 57888888888877555555555555566666666554
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.7e-43 Score=407.07 Aligned_cols=528 Identities=19% Similarity=0.186 Sum_probs=400.0
Q ss_pred EEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCC
Q 003931 9 YLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNK 88 (785)
Q Consensus 9 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 88 (785)
+.+-++-+++.++ ..+. +++++|||++|+|+.+.+.+|.++++|++|+|++|.|+++.+.+|.++++|++|+|++|+
T Consensus 35 ~~~c~~~~l~~vP-~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIP-DNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSSCC-SSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCccC-CCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 3444444566443 2221 479999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCccccc-CCcCCCCCCCCCEEEcccCcccccCC
Q 003931 89 LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP-IPGDIGSMSNLQLVELFNNSFTGQIP 167 (785)
Q Consensus 89 i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~ 167 (785)
++ .+|...|.++++|++|+|++|++++..+..|+++++|++|++++|.+++. .|..++.+++|++|++++|.+++..+
T Consensus 112 l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 190 (635)
T 4g8a_A 112 IQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 190 (635)
T ss_dssp CC-EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred CC-CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc
Confidence 98 67888889999999999999999988888899999999999999999764 57788899999999999999998888
Q ss_pred ccccCCCCC----CEEEcccCcCcccCCccccCCcccCeeecccccccc-CCchhccCCCCCCEEEccCCCCcc-----c
Q 003931 168 SSLGQLKNL----QHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSG-GLPLSLSNLSKLNDLGLSDNFLSG-----E 237 (785)
Q Consensus 168 ~~l~~l~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~-~~~~~l~~l~~L~~L~L~~n~l~~-----~ 237 (785)
..+..+.++ ..++++.|.+....+..+ ....++.+++..|.... ..+..+..+..++...+..+.... .
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 269 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 269 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred ccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccc
Confidence 877665544 478999999986555444 44567788888886653 234566778888777765443221 1
Q ss_pred cCccccCCCCCCCEEEeecCcCc---ccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCcc
Q 003931 238 ISANLIGNWTELESLQIQNNSFM---GNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPT 314 (785)
Q Consensus 238 ~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~ 314 (785)
.....+..+..+....+..+... ...+..+..+..++.+.+.++.+.+. ..+.....|+.|++++|.+.+..+
T Consensus 270 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~-- 345 (635)
T 4g8a_A 270 FDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT-- 345 (635)
T ss_dssp CCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC--
T ss_pred ccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCc--
Confidence 12222444556666666554332 23344566778899999999988754 346777899999999999886544
Q ss_pred CcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcc--ccCccccccCCCcEEEecCccccccCCcccccCCC
Q 003931 315 LWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHG--ELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSP 392 (785)
Q Consensus 315 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~ 392 (785)
..++.|+.+++..|..... .....+++|+.++++.|.+.. ..+..+..+.+++.+++..+...
T Consensus 346 -~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~------------ 410 (635)
T 4g8a_A 346 -LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI------------ 410 (635)
T ss_dssp -CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE------------
T ss_pred -ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc------------
Confidence 3467889999999987643 345679999999999998853 23444445555555555444433
Q ss_pred CccEEEcccccceecCCccccCCCCCcEEEccCCCCcccC-CccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEc
Q 003931 393 SLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSL-PACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRL 471 (785)
Q Consensus 393 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L 471 (785)
.. +..+..+..|+.+++..++..... +..+..+.+++.++++.|.+.+..+..+..++.++.|++
T Consensus 411 -------------~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~L 476 (635)
T 4g8a_A 411 -------------TM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM 476 (635)
T ss_dssp -------------EE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred -------------cc-cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhh
Confidence 22 223445556666666666554433 345667778888888888888777777888888888888
Q ss_pred cCCeee-eecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccC
Q 003931 472 SGNQFV-GEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTG 550 (785)
Q Consensus 472 s~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~ 550 (785)
++|.+. +..|..|..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|+.+++|++|++++|++++
T Consensus 477 s~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 477 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB
T ss_pred hhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC
Confidence 888743 4566778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cCCcccccC-CCCCeEecCCCcCcc
Q 003931 551 EIPKSISNL-TELAYLDLSNNKLTG 574 (785)
Q Consensus 551 ~~p~~~~~l-~~L~~L~Ls~n~l~~ 574 (785)
..|..+..+ ++|++|++++|.+..
T Consensus 557 ~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 557 SKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 888888877 678889998888864
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.2e-42 Score=390.21 Aligned_cols=457 Identities=18% Similarity=0.181 Sum_probs=328.5
Q ss_pred CCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEE
Q 003931 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLD 83 (785)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 83 (785)
+...+++++++|++++++. .+. ++|++|++++|.++.+.+.+|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTHVPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCSCCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCccCCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 3455789999999986543 332 7899999999999999888999999999999999999998899999999999999
Q ss_pred CCCCCCcccCChhhhcCCCCCcEEECCCCCCccc-CCccccCCCCCcEEEcCCCcccccCCcCCCCCCCC--CEEEcccC
Q 003931 84 LSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGK-LSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNL--QLVELFNN 160 (785)
Q Consensus 84 Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L--~~L~L~~n 160 (785)
+++|.++ .+|.. .+++|++|++++|.+++. .|..|.++++|++|++++|++++. .+..+++| ++|++++|
T Consensus 107 Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 107 VSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp CTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred CCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 9999998 67875 789999999999999874 357899999999999999998853 45555666 99999999
Q ss_pred cc--cccCCccccCCC-CCCEEEcccCcCcccCCc-cccCCcccCeeeccccccc----cCCchhccCCCCCCEEEccCC
Q 003931 161 SF--TGQIPSSLGQLK-NLQHLDLRMNALNYTIPP-ELGLCTNLSYLALAVNQLS----GGLPLSLSNLSKLNDLGLSDN 232 (785)
Q Consensus 161 ~~--~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~i~----~~~~~~l~~l~~L~~L~L~~n 232 (785)
.+ .+..|..+..+. ..-++++++|.+.+.++. .+..+++|+.+++++|... ......+..+++|+.++++++
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 98 777888777664 122567788887765554 3567889999999988521 122345778888999988888
Q ss_pred CCccccCccc--cCCCCCCCEEEeecCcCcccCCccC-----cCCCCCcEEECcCccccccCC-hhccC---CCCCCEEE
Q 003931 233 FLSGEISANL--IGNWTELESLQIQNNSFMGNIPPEI-----GLLTKLQYLFLYRNNFSGPIP-SEIEK---LTSLENLD 301 (785)
Q Consensus 233 ~l~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~p-~~~~~---l~~L~~L~ 301 (785)
.+.+...... ....++|++|++++|.+.+.+|..+ ..++.|+.++++.+.+ .+| .++.. ..+|+.|+
T Consensus 260 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 260 ETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp EECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEE
T ss_pred cCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEE
Confidence 7664321110 1123589999999999988888877 6777777777777776 344 33322 26799999
Q ss_pred CcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcc--ccCccccccCCCcEEEecCccc
Q 003931 302 LSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHG--ELPENISRLVKLNKFSVFTNNF 379 (785)
Q Consensus 302 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~n~l 379 (785)
+++|.+.... ....+++|++|++++|.+++..|..++.+++|+.|++++|++++ .+|..+..+++|+.+++++|++
T Consensus 338 l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 338 ISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred ccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcC
Confidence 9999886432 12678889999999999998888888999999999999998886 3355677788888888888887
Q ss_pred cccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcc
Q 003931 380 SGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKA 459 (785)
Q Consensus 380 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 459 (785)
++.+|.......++|+.|++++|++++..|..+. .+|++|++++|.++. +|..+..+++|++|++++|++++..+..
T Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~ 492 (562)
T 3a79_B 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGV 492 (562)
T ss_dssp BSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTS
T ss_pred CCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCHHH
Confidence 7756554333334666666666666655444332 455666666665552 3333335555555555555555433333
Q ss_pred cCCCCCCcEEEccCCeee
Q 003931 460 FGVHPRLDFIRLSGNQFV 477 (785)
Q Consensus 460 ~~~~~~L~~L~Ls~n~l~ 477 (785)
+..+++|+.|++++|++.
T Consensus 493 ~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 493 FDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp TTTCTTCCCEECCSCCBC
T ss_pred HhcCCCCCEEEecCCCcC
Confidence 445555555555555544
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.7e-42 Score=392.48 Aligned_cols=460 Identities=21% Similarity=0.200 Sum_probs=253.0
Q ss_pred cEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCC
Q 003931 56 THLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLAT 135 (785)
Q Consensus 56 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 135 (785)
+++++++|.++. +|..+. ++|++|++++|.++ .++...|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 445555554443 222221 44555555555554 23333345555555555555555555555555555555555555
Q ss_pred CcccccCCcCCCCCCCCCEEEcccCccccc-CCccccCCCCCCEEEcccCcCcccCCccccCCccc--Ceeecccccc--
Q 003931 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQ-IPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNL--SYLALAVNQL-- 210 (785)
Q Consensus 136 n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L--~~L~l~~n~i-- 210 (785)
|+++ .+|.. .+++|++|++++|.+.+. .|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+
T Consensus 110 N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~ 183 (562)
T 3a79_B 110 NRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHI 183 (562)
T ss_dssp SCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCC
T ss_pred CcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccc
Confidence 5555 23332 455555555555555542 245555666666666666655432 23333333 6666666655
Q ss_pred ccCCchhccCCC--CCCEEEccCCCCccccCccccCCCCCCCEEEeecCcC-----cccCCccCcCCCCCcEEECcCccc
Q 003931 211 SGGLPLSLSNLS--KLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF-----MGNIPPEIGLLTKLQYLFLYRNNF 283 (785)
Q Consensus 211 ~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~~L~~L~L~~n~l 283 (785)
++..|..+..+. .+ .+++++|.+.+.++...+..+++|+.+++++|.. .+. ...+..+++|+.++++++.+
T Consensus 184 ~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 184 KGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEE
T ss_pred cccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcC
Confidence 555555554433 22 4456666666555555566666666666666641 111 12234444555555444443
Q ss_pred cccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCC-----CCCCCCCEEEccCCcCccc
Q 003931 284 SGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI-----GSMASLVAFDVNTNQLHGE 358 (785)
Q Consensus 284 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-----~~l~~L~~L~l~~n~l~~~ 358 (785)
.+.. +.+ ++.. ...++|++|++++|.+++.+|..+ ..++.|+.++++.+.+ .
T Consensus 262 ~~~~-------------------~~~-~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~ 318 (562)
T 3a79_B 262 TWKC-------------------SVK-LFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--L 318 (562)
T ss_dssp CHHH-------------------HHH-HHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--S
T ss_pred cHHH-------------------HHH-HHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--e
Confidence 3211 110 1111 112356666666666665555554 4444444444444443 2
Q ss_pred cCc-cccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCcccc
Q 003931 359 LPE-NISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLR 437 (785)
Q Consensus 359 ~~~-~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 437 (785)
+|. .+..+ + .. .+++.+++++|.+ .... ...
T Consensus 319 ~p~~~~~~~--------------------~-~~-~~L~~L~l~~n~~------------------------~~~~--~~~ 350 (562)
T 3a79_B 319 FSKEALYSV--------------------F-AE-MNIKMLSISDTPF------------------------IHMV--CPP 350 (562)
T ss_dssp SCHHHHHHH--------------------H-HT-CCCSEEEEESSCC------------------------CCCC--CCS
T ss_pred cChhhhhhh--------------------h-cc-CcceEEEccCCCc------------------------cccc--Ccc
Confidence 221 11000 0 00 1233333333333 2111 113
Q ss_pred CCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeee--cccchhcccccceeccccceeeeccC-cchhccccC
Q 003931 438 NCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGE--ISPDWGECRNLSNLQLDRNRISGGIP-AELGNLTRL 514 (785)
Q Consensus 438 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L 514 (785)
.+++|++|++++|++++..+..++.+++|+.|++++|++.+. .|..+..+++|+.|++++|.+++.+| ..+..+++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 455566666666666655555666666666666666666652 23456677777777777777776333 346777888
Q ss_pred CeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCC
Q 003931 515 GVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHN 594 (785)
Q Consensus 515 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N 594 (785)
+.|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.+++++|
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 8888888888766665544 68888899988888 67776678889999999999988544444888899999999999
Q ss_pred cCcccCC
Q 003931 595 DLSGEIP 601 (785)
Q Consensus 595 ~l~~~~p 601 (785)
++.+..+
T Consensus 508 ~~~c~c~ 514 (562)
T 3a79_B 508 PWDCTCP 514 (562)
T ss_dssp CBCCCHH
T ss_pred CcCCCcc
Confidence 9886554
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.7e-40 Score=361.06 Aligned_cols=372 Identities=21% Similarity=0.207 Sum_probs=294.9
Q ss_pred cEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCc-ccCCccCCCCCCccEEECCC
Q 003931 8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELT-LEFPSFILTCRNLTYLDLSL 86 (785)
Q Consensus 8 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~ 86 (785)
+.++.+++.++..+. + .++|++|++++|.++.+.+.+|.++++|++|++++|.+. .+.+..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQVPE--L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSCCC--C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccCCC--C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 456777777764433 2 267888888888888887788888888888888888876 34466788888888888888
Q ss_pred CCCcccCChhhhcCCCCCcEEECCCCCCcccCCcc--ccCCCCCcEEEcCCCcccccCCcC-CCCCCCCCEEEcccCccc
Q 003931 87 NKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPN--VSKLSNLIDLRLATNKFSGPIPGD-IGSMSNLQLVELFNNSFT 163 (785)
Q Consensus 87 n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~L~~n~~~ 163 (785)
|.+++..|. .|.++++|++|++++|.+++..+.. |..+++|++|++++|.+++..|.. +.++++|++|++++|.+.
T Consensus 89 n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 89 NQFLQLETG-AFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp CTTCEECTT-TTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CccCccChh-hccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 888754444 4588888888888888887644444 888888888888888888776765 788888888888888888
Q ss_pred ccCCccccCC--CCCCEEEcccCcCcccCCcc--------ccCCcccCeeeccccccccCCchhccCC---CCCCEEEcc
Q 003931 164 GQIPSSLGQL--KNLQHLDLRMNALNYTIPPE--------LGLCTNLSYLALAVNQLSGGLPLSLSNL---SKLNDLGLS 230 (785)
Q Consensus 164 ~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~--------~~~l~~L~~L~l~~n~i~~~~~~~l~~l---~~L~~L~L~ 230 (785)
+..+..+..+ .+|+.|++++|.+.+..+.. +..+++|++|++++|.+++..|..+... ++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 8777777665 67888888888887654433 2356788888888888887777766543 788888888
Q ss_pred CCCCccccCc---------cccC--CCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCE
Q 003931 231 DNFLSGEISA---------NLIG--NWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLEN 299 (785)
Q Consensus 231 ~n~l~~~~~~---------~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 299 (785)
+|...+.... ..+. ..++|++|++++|.+.+..|..++.+++|++|++++|.+++..|..|..+++|+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 8865432110 0011 2357999999999999888888999999999999999998888888999999999
Q ss_pred EECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccc
Q 003931 300 LDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNF 379 (785)
Q Consensus 300 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l 379 (785)
|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.+++++|++
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 99999999888888888999999999999999888888889999999999999999877777778889999999999999
Q ss_pred cccCC
Q 003931 380 SGSIP 384 (785)
Q Consensus 380 ~~~~~ 384 (785)
++..|
T Consensus 408 ~~~~~ 412 (455)
T 3v47_A 408 DCSCP 412 (455)
T ss_dssp CCCTT
T ss_pred ccCCC
Confidence 88776
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-39 Score=359.43 Aligned_cols=365 Identities=21% Similarity=0.235 Sum_probs=214.3
Q ss_pred ccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEEC
Q 003931 199 NLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFL 278 (785)
Q Consensus 199 ~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 278 (785)
+|++|++++|.+++..|..|.++++|++|++++|.+.+.+++..++++++|++|++++|.+.+..|..|+.+++|++|++
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 44444444444444444444444555555555554444444444555555555555555555555555555555555555
Q ss_pred cCccccccCChh--ccCCCCCCEEECcCCcccccCCcc-CcCCCCCCEEEcccccccCCCCCCCCCC--CCCCEEEccCC
Q 003931 279 YRNNFSGPIPSE--IEKLTSLENLDLSGNQLSGTIPPT-LWNLTNLLSLQLFSNNLSGTIPPEIGSM--ASLVAFDVNTN 353 (785)
Q Consensus 279 ~~n~l~~~~p~~--~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l--~~L~~L~l~~n 353 (785)
++|.+++..|.. |..+++|++|++++|.+++..|.. +..+++|++|++++|.+++..+..+..+ .+|+.+++++|
T Consensus 111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n 190 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC
Confidence 555555433322 555555555555555555444443 4555555555555555555555444443 44555555555
Q ss_pred cCccccCccc--------cccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccC---CCCCcEEE
Q 003931 354 QLHGELPENI--------SRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCS---GFALEELT 422 (785)
Q Consensus 354 ~l~~~~~~~~--------~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~---~~~L~~L~ 422 (785)
.+.+..+..+ ..+++ |+.|++++|.+.+..|..+.. ...++.++
T Consensus 191 ~l~~~~~~~~~~~~~~~~~~~~~-------------------------L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 191 TLQDMNEYWLGWEKCGNPFKNTS-------------------------ITTLDLSGNGFKESMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp BCTTCSTTCTTHHHHCCTTTTCE-------------------------EEEEECTTSCCCHHHHHHHHHHTTTCCEEEEE
T ss_pred cccccchhhccccccccccccce-------------------------eeeEecCCCcccccchhhhhccccccceeeEe
Confidence 5543322211 12223 333333333333333332221 13444555
Q ss_pred ccCCCCcccCCccccCCCCCcEEEcccCccccccCcccC--CCCCCcEEEccCCeeeeecccchhcccccceecccccee
Q 003931 423 VNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFG--VHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRI 500 (785)
Q Consensus 423 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i 500 (785)
+++|...+... ..+.+.......+. ..++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 246 l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 311 (455)
T 3v47_A 246 LSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311 (455)
T ss_dssp CTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence 55444332110 01111111111121 135677777777777777777777778888888888888
Q ss_pred eeccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccc
Q 003931 501 SGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQEL 580 (785)
Q Consensus 501 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 580 (785)
++..|..|.++++|+.|++++|.+++..|..++.+++|++|++++|++++..|..+..+++|++|++++|++++..+..+
T Consensus 312 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh
Confidence 87777778888888888888888877777788888888888888888887778888888888888888888887777777
Q ss_pred cccCCCcEEeCCCCcCcccCCc
Q 003931 581 GRFDKLLSLNLSHNDLSGEIPS 602 (785)
Q Consensus 581 ~~l~~L~~L~ls~N~l~~~~p~ 602 (785)
..+++|+.|++++|++++.+|.
T Consensus 392 ~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 392 DRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TTCTTCCEEECCSSCBCCCTTT
T ss_pred ccCCcccEEEccCCCcccCCCc
Confidence 8888899999999988877763
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.7e-39 Score=348.96 Aligned_cols=421 Identities=24% Similarity=0.270 Sum_probs=187.0
Q ss_pred CCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeec
Q 003931 126 SNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLAL 205 (785)
Q Consensus 126 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 205 (785)
++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|.+++++.+|+.++++.|.. .++++|++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l 78 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL 78 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence 4444445544444 34444444444444444444444444444444444444333333321 23455555
Q ss_pred cccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccc
Q 003931 206 AVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSG 285 (785)
Q Consensus 206 ~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 285 (785)
++|.+++. |. -.++|++|++++|.+++ +|.. +++|++|++++|.+.+ +|.. .++|++|++++|.+++
T Consensus 79 ~~~~l~~l-p~---~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~ 145 (454)
T 1jl5_A 79 NNLGLSSL-PE---LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK 145 (454)
T ss_dssp TTSCCSCC-CS---CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS
T ss_pred cCCccccC-CC---CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC
Confidence 55555432 21 12445555555555543 3321 2445555555555443 1111 1345555555555543
Q ss_pred cCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccc
Q 003931 286 PIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISR 365 (785)
Q Consensus 286 ~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 365 (785)
+| +|+++++|++|++++|++++ +|..+ ++|++|++++|++++ +| .++.+++|+.+++++|
T Consensus 146 -lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N------------ 205 (454)
T 1jl5_A 146 -LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNN------------ 205 (454)
T ss_dssp -CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS------------
T ss_pred -Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCC------------
Confidence 33 35555555555555555543 33221 345555555555543 23 3444444555554444
Q ss_pred cCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccCCCCcccCCccccCCCCCcEE
Q 003931 366 LVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRV 445 (785)
Q Consensus 366 l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 445 (785)
++++ +|.. .++++.|++++|.+. .+| .+..+++|++|++++|.+++. |. ..++|++|
T Consensus 206 ------------~l~~-l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L 262 (454)
T 1jl5_A 206 ------------SLKK-LPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEAL 262 (454)
T ss_dssp ------------CCSS-CCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEE
T ss_pred ------------cCCc-CCCC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEE
Confidence 4443 2211 125666666666666 444 366666777777777777652 32 23667777
Q ss_pred EcccCccccccCcccCCCCCCcEEEccCCeeeeecccchhcccccceeccccceeeeccCcchhcc-ccCCeeecccCcc
Q 003931 446 RFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNL-TRLGVLSLDSNEL 524 (785)
Q Consensus 446 ~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~L~Ls~n~l 524 (785)
++++|++.+. +. ..++|+.|++++|.+.+... ..++|+.|++++|.+++. + .+ ++|+.|++++|++
T Consensus 263 ~l~~N~l~~l-~~---~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l 329 (454)
T 1jl5_A 263 NVRDNYLTDL-PE---LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKL 329 (454)
T ss_dssp ECCSSCCSCC-CC---CCTTCCEEECCSSCCSEESC----CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCC
T ss_pred ECCCCccccc-Cc---ccCcCCEEECcCCccCcccC----cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcc
Confidence 7777777652 22 23677777777777765321 125777777777777652 2 22 4777888888887
Q ss_pred ccCCCcccccCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCcc--CCCccccccCCCcEEeCCCCcCcccCCc
Q 003931 525 TGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTG--DVPQELGRFDKLLSLNLSHNDLSGEIPS 602 (785)
Q Consensus 525 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 602 (785)
++ +|.. +++|++|++++|+++ .+|. .+++|++|++++|++++ .+|.++..+ +.|.+.+.+|.
T Consensus 330 ~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~ 393 (454)
T 1jl5_A 330 IE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPE 393 (454)
T ss_dssp SC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC-------
T ss_pred cc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhccccccccc
Confidence 75 4443 467788888888877 4555 46778888888888877 556555432 33555556655
Q ss_pred ccchhhhhhheeecccccCCC--CCCcccccCCCCceEeccCCceeeecCCcc
Q 003931 603 NLGNLFVLQYMLDLSSNSLSG--TIPQELGKLTSLEILNLSRNQLSGRIPASL 653 (785)
Q Consensus 603 ~~~~l~~l~~~l~ls~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 653 (785)
. +..++. +|+++|.+++ .+|. +++.|.+.+|.+.+.++.+.
T Consensus 394 ~---~~~L~~-L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~ 436 (454)
T 1jl5_A 394 L---PQNLKQ-LHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAH 436 (454)
T ss_dssp -----------------------------------------------------
T ss_pred c---cCcCCE-EECCCCcCCccccchh------hHhheeCcCcccCCccccCH
Confidence 3 244554 7888888775 4443 35556677777766555443
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.7e-38 Score=344.34 Aligned_cols=413 Identities=21% Similarity=0.282 Sum_probs=181.9
Q ss_pred CCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCC-------------CEEEcccCcccccC
Q 003931 100 NLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNL-------------QLVELFNNSFTGQI 166 (785)
Q Consensus 100 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L-------------~~L~L~~n~~~~~~ 166 (785)
..++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++++++| ++|++++|.+++ +
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 468999999999999 6899999999999999999999999999999998876 555555555553 2
Q ss_pred CccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCC
Q 003931 167 PSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNW 246 (785)
Q Consensus 167 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l 246 (785)
|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++. +.. .++|++|++++|.+++ +| . ++++
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~-~~~l 152 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-E-LQNS 152 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-C-CTTC
T ss_pred CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-c-cCCC
Confidence 221 2455555555555554 3322 24555555555555431 110 1345555555555542 44 1 4555
Q ss_pred CCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEc
Q 003931 247 TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQL 326 (785)
Q Consensus 247 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 326 (785)
++|++|++++|++++ +|..+ ++|++|++++|.+++ +| .++++++|+.|++++|.+++ +|.. .++|++|++
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 555555555555543 33221 345555555555543 33 34455555555555555543 2221 134455555
Q ss_pred ccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEccccccee
Q 003931 327 FSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSG 406 (785)
Q Consensus 327 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 406 (785)
++|.++ .+| .++.+++|+.|++++|++. + +|.. .++++.|++++|.+.+
T Consensus 223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~------------------------~-l~~~----~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 223 GNNILE-ELP-ELQNLPFLTTIYADNNLLK------------------------T-LPDL----PPSLEALNVRDNYLTD 271 (454)
T ss_dssp CSSCCS-SCC-CCTTCTTCCEEECCSSCCS------------------------S-CCSC----CTTCCEEECCSSCCSC
T ss_pred cCCcCC-ccc-ccCCCCCCCEEECCCCcCC------------------------c-cccc----ccccCEEECCCCcccc
Confidence 555444 333 2444445555555444444 2 2211 1355556666665554
Q ss_pred cCCccccCCCCCcEEEccCCCCcccCCccccCCCCCcEEEcccCccccccCcccCCCCCCcEEEccCCeeeeecccchhc
Q 003931 407 ELPHELCSGFALEELTVNGNNFTGSLPACLRNCSNLNRVRFDGNQFTGNITKAFGVHPRLDFIRLSGNQFVGEISPDWGE 486 (785)
Q Consensus 407 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 486 (785)
+|.. ..+|+.|++++|.+++.. .. .++|++|++++|++++... ..++|+.|++++|++.+ +|..
T Consensus 272 -l~~~---~~~L~~L~ls~N~l~~l~-~~---~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~-lp~~--- 335 (454)
T 1jl5_A 272 -LPEL---PQSLTFLDVSENIFSGLS-EL---PPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIE-LPAL--- 335 (454)
T ss_dssp -CCCC---CTTCCEEECCSSCCSEES-CC---CTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSC-CCCC---
T ss_pred -cCcc---cCcCCEEECcCCccCccc-Cc---CCcCCEEECcCCcCCcccC----CcCcCCEEECCCCcccc-cccc---
Confidence 2221 245666666666665421 11 1466677777776664221 12467777777777765 3332
Q ss_pred ccccceeccccceeeeccCcchhccccCCeeecccCcccc--CCCcccccCCCCCeecccCCcccCcCCcccccCCCCCe
Q 003931 487 CRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTG--KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLTELAY 564 (785)
Q Consensus 487 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~ 564 (785)
+++|+.|++++|++++ +|. .+++|+.|++++|++++ .+|..++. ++.|.+.+.+|.. +++|++
T Consensus 336 ~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~ 400 (454)
T 1jl5_A 336 PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQ 400 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EECCC-----------------
T ss_pred CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCE
Confidence 4677777777777763 444 35777777777777776 45554433 2345555566553 478888
Q ss_pred EecCCCcCcc--CCCccccccCCCcEEeCCCCcCcccCCcccch
Q 003931 565 LDLSNNKLTG--DVPQELGRFDKLLSLNLSHNDLSGEIPSNLGN 606 (785)
Q Consensus 565 L~Ls~n~l~~--~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 606 (785)
|++++|++++ .+|. +++.|.+.+|.+.+.+|.....
T Consensus 401 L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~ 438 (454)
T 1jl5_A 401 LHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHET 438 (454)
T ss_dssp --------------------------------------------
T ss_pred EECCCCcCCccccchh------hHhheeCcCcccCCccccCHHH
Confidence 9999998886 5554 3556677888877666554433
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=337.45 Aligned_cols=321 Identities=23% Similarity=0.224 Sum_probs=247.2
Q ss_pred cEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCC
Q 003931 8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLN 87 (785)
Q Consensus 8 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n 87 (785)
+.++.+++.++.++. .+ .+++++|++++|.++.+.+.+|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~-~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPE-GI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCS-CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCC-CC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 567777777775443 23 257888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCC
Q 003931 88 KLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIP 167 (785)
Q Consensus 88 ~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~ 167 (785)
.++ .+|...|.++++|++|+|++|.+.+..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+
T Consensus 91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 887 5777777888888888888888887777888888888888888888887777788888888888888888887666
Q ss_pred ccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCC
Q 003931 168 SSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWT 247 (785)
Q Consensus 168 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 247 (785)
..+.++++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|++|++++|.++ .+|...++.++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~ 248 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLV 248 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCcc
Confidence 67788888888888888887777777777788888888877766666666555567777777777776 56655577777
Q ss_pred CCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcc
Q 003931 248 ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLF 327 (785)
Q Consensus 248 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 327 (785)
+|+.|++++|.+.+..+..|..+++|++|++++|.+++..|.+|..+++|+.|++++|++++..+..|..+++|++|+++
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 77777777777776666667777777777777777777767777777777777777777776656666777777777777
Q ss_pred cccccC
Q 003931 328 SNNLSG 333 (785)
Q Consensus 328 ~n~l~~ 333 (785)
+|++..
T Consensus 329 ~N~l~c 334 (477)
T 2id5_A 329 SNPLAC 334 (477)
T ss_dssp SSCEEC
T ss_pred CCCccC
Confidence 776653
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.9e-36 Score=332.82 Aligned_cols=345 Identities=24% Similarity=0.348 Sum_probs=179.1
Q ss_pred CCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEE
Q 003931 4 LSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLD 83 (785)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 83 (785)
+++++.|+++++.++.. + .+..+++|++|++++|.++.+.+ |..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 34555566655555532 2 24555556666666655555443 5555556666665555554433 55555556666
Q ss_pred CCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccc
Q 003931 84 LSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT 163 (785)
Q Consensus 84 Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~ 163 (785)
+++|.+++ ++. |.++++|++|++++|.+.+. ..+..+++|++|+++ |.+.+.. .+.++++|++|++++|.+.
T Consensus 119 L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 119 LFNNQITD-IDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp CCSSCCCC-CGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCC-ChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 65555552 332 35555555555555555532 235555555555554 2333221 2555555555555555554
Q ss_pred ccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCcccc
Q 003931 164 GQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLI 243 (785)
Q Consensus 164 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~ 243 (785)
+. ..+..+++|++|++++|.+.+..+ ++.+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+ +
T Consensus 191 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~---~ 261 (466)
T 1o6v_A 191 DI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP---L 261 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG---G
T ss_pred CC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh---h
Confidence 32 235555555555555555554333 44455555555555555432 234555555555555555553221 4
Q ss_pred CCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCE
Q 003931 244 GNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLS 323 (785)
Q Consensus 244 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 323 (785)
+.+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++++..| +..+++|++
T Consensus 262 ~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 335 (466)
T 1o6v_A 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQR 335 (466)
T ss_dssp TTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCE
Confidence 555555555555555554322 4555555555555555554322 4555555555555555554433 445555555
Q ss_pred EEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccc
Q 003931 324 LQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSG 381 (785)
Q Consensus 324 L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~ 381 (785)
|++++|++++. ..+..+++|+.|++++|++.+..| +..+++|+.+++++|.+++
T Consensus 336 L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 336 LFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred eECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 55555555543 244555555555555555554444 4455555555555555443
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.9e-36 Score=329.62 Aligned_cols=348 Identities=22% Similarity=0.264 Sum_probs=213.6
Q ss_pred CCCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEE
Q 003931 3 DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL 82 (785)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 82 (785)
++++|++|++++|.+++. | .|..+++|++|++++|.++.++ |..+++|++|++++|.+++. + +..+++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 356666777777666654 2 4666667777777777666653 66666677777777666654 2 6666667777
Q ss_pred ECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcc
Q 003931 83 DLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSF 162 (785)
Q Consensus 83 ~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~ 162 (785)
++++|.+++ +| +..+++|++|++++|.+++. .+..+++|++|++++|...+.+ .+..+++|++|++++|.+
T Consensus 112 ~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 112 NCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp ECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCe-ec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc
Confidence 777776663 43 46666677777776666653 2566666677777666444333 356666666777766666
Q ss_pred cccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccc
Q 003931 163 TGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANL 242 (785)
Q Consensus 163 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 242 (785)
++. | ++.+++|++|++++|.+++. .++.+++|++|++++|++++ +| ++.+++|+.|++++|.+++ +|
T Consensus 183 ~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~-~~--- 249 (457)
T 3bz5_A 183 TEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE-LD--- 249 (457)
T ss_dssp CCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC---
T ss_pred cee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC-cC---
Confidence 652 3 56666666666666666643 25666666666666666665 33 5666666666666666663 23
Q ss_pred cCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCc--------c
Q 003931 243 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPP--------T 314 (785)
Q Consensus 243 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~--------~ 314 (785)
++.+++|+.|++++| +|+.+++++|.+.+.+| ++.+++|+.|++++|...+.+|. .
T Consensus 250 ~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~ 313 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313 (457)
T ss_dssp CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCC
T ss_pred HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEec
Confidence 233444554444433 34445555555554444 34556666666666655444432 2
Q ss_pred CcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCc
Q 003931 315 LWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSL 394 (785)
Q Consensus 315 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L 394 (785)
+..+++|++|++++|++++. .++.+++|+.|++++|++.+ ++.|..+.+..|.+.|. ... ..+
T Consensus 314 l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~-~~l 376 (457)
T 3bz5_A 314 LSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQT-ITM 376 (457)
T ss_dssp CTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEE-EEC
T ss_pred hhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----cee-eec
Confidence 44556788888888888763 27778888888888888775 23344445666666654 111 145
Q ss_pred cEEEcccccceecCCcccc
Q 003931 395 INVSFSNNSFSGELPHELC 413 (785)
Q Consensus 395 ~~L~l~~n~l~~~~~~~~~ 413 (785)
..+++++|+++|.+|..+.
T Consensus 377 ~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 377 PKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp CCBCCBTTBEEEECCTTCB
T ss_pred CccccccCcEEEEcChhHh
Confidence 5667777777777776543
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1e-35 Score=328.53 Aligned_cols=348 Identities=28% Similarity=0.375 Sum_probs=291.8
Q ss_pred cCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCc
Q 003931 26 SSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLE 105 (785)
Q Consensus 26 ~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~ 105 (785)
..+++++.|+++++.+..++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++. |.++++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~ 115 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP--LANLTNLT 115 (466)
T ss_dssp HHHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred hHhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh--hcCCCCCC
Confidence 45678999999999998865 48889999999999999987765 8999999999999999984 444 68999999
Q ss_pred EEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCc
Q 003931 106 YLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 185 (785)
Q Consensus 106 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 185 (785)
+|++++|.+++..+ +..+++|++|++++|.+.+. + .+..+++|++|+++ |.+.+.. .+.++++|++|++++|.
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK 188 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence 99999999986543 89999999999999998853 3 58899999999996 4454332 38899999999999999
Q ss_pred CcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCc
Q 003931 186 LNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPP 265 (785)
Q Consensus 186 l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 265 (785)
+... ..+..+++|++|++++|.+++..+ ++.+++|++|++++|.+.+ ++ .+..+++|++|++++|.+.+..+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IG--TLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-ch--hhhcCCCCCEEECCCCccccchh-
Confidence 8754 458889999999999999987655 7788999999999999874 43 27889999999999999986544
Q ss_pred cCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCC
Q 003931 266 EIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASL 345 (785)
Q Consensus 266 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 345 (785)
+..+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|++|++++|++++..| +..+++|
T Consensus 261 -~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 333 (466)
T 1o6v_A 261 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL 333 (466)
T ss_dssp -GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTC
T ss_pred -hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccC
Confidence 8889999999999999986544 8889999999999999986544 7889999999999999987665 7889999
Q ss_pred CEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceec
Q 003931 346 VAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGE 407 (785)
Q Consensus 346 ~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 407 (785)
+.|++++|.+.+. ..+..+++|+.+++++|++++..| +..+. +|+.+++++|++++.
T Consensus 334 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLT-RITQLGLNDQAWTNA 390 (466)
T ss_dssp CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCT-TCCEEECCCEEEECC
T ss_pred CEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCC-CCCEEeccCCcccCC
Confidence 9999999998865 467888889999998888887766 45554 788888888888763
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.6e-36 Score=325.91 Aligned_cols=356 Identities=21% Similarity=0.217 Sum_probs=276.0
Q ss_pred CCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChh
Q 003931 17 LNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPER 96 (785)
Q Consensus 17 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 96 (785)
.....+..++++++|++|++++|.++.++ +|..+++|++|++++|.+++. + +..+++|++|++++|.+++ ++
T Consensus 30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~-- 101 (457)
T 3bz5_A 30 MQATDTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD-- 101 (457)
T ss_dssp CCTTSEEEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--
T ss_pred cCcccccChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--
Confidence 34445567888999999999999999874 688999999999999999876 3 8899999999999999985 44
Q ss_pred hhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCC
Q 003931 97 LFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNL 176 (785)
Q Consensus 97 ~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 176 (785)
|.++++|++|++++|.+++. + +..+++|++|++++|++++. .++.+++|++|++++|...+.+ .++.+++|
T Consensus 102 -~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L 172 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQL 172 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTC
T ss_pred -cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcC
Confidence 58899999999999999874 3 88999999999999999874 3888999999999999665555 47889999
Q ss_pred CEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeec
Q 003931 177 QHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQN 256 (785)
Q Consensus 177 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 256 (785)
++|++++|.+++ +| ++.+++|+.|++++|.+++. .++.+++|++|++++|++++ +| ++.+++|++|++++
T Consensus 173 ~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 173 TTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VTPLTQLTYFDCSV 242 (457)
T ss_dssp CEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCS
T ss_pred CEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---ccccCCCCEEEeeC
Confidence 999999999986 34 78889999999999999865 47888999999999999985 55 77889999999999
Q ss_pred CcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCC
Q 003931 257 NSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIP 336 (785)
Q Consensus 257 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 336 (785)
|.+++.. ++.+++|+.|++++| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|
T Consensus 243 N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 243 NPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp SCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred CcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 9988753 456788888888765 46778999999888877 5789999999999998877665
Q ss_pred CC--------CCCCCCCCEEEccCCcCccccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecC
Q 003931 337 PE--------IGSMASLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGEL 408 (785)
Q Consensus 337 ~~--------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 408 (785)
.. +..+++|++|++++|++++. .+..+++|+.+++++|++++. +.+..+++++|.+.|.
T Consensus 304 ~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l---------~~L~~L~l~~n~l~g~- 370 (457)
T 3bz5_A 304 CQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDF---------SSVGKIPALNNNFEAE- 370 (457)
T ss_dssp CTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBC---------TTGGGSSGGGTSEEEE-
T ss_pred cCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCc---------cccccccccCCcEEec-
Confidence 42 34455666666666666653 255666666666666666541 1444455555555544
Q ss_pred CccccCCCCCcEEEccCCCCcccCCcc
Q 003931 409 PHELCSGFALEELTVNGNNFTGSLPAC 435 (785)
Q Consensus 409 ~~~~~~~~~L~~L~l~~n~~~~~~~~~ 435 (785)
+.+..+..+++++|+++|.+|..
T Consensus 371 ----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 371 ----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp ----EEEEECCCBCCBTTBEEEECCTT
T ss_pred ----ceeeecCccccccCcEEEEcChh
Confidence 12233445555666665555543
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2e-35 Score=327.79 Aligned_cols=323 Identities=22% Similarity=0.168 Sum_probs=249.4
Q ss_pred CCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECC
Q 003931 31 VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT 110 (785)
Q Consensus 31 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls 110 (785)
-+.++.+++.++.++.. + .+++++|++++|.+++..+..|.++++|++|++++|.+++..| ..|.++++|++|+|+
T Consensus 13 ~~~v~c~~~~l~~ip~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEG-I--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLR 88 (477)
T ss_dssp TTEEECCSCCCSSCCSC-C--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCcCCCC-C--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECC
Confidence 46788888888877643 2 2578889999988888888888888888888888888885434 445888888888888
Q ss_pred CCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccC
Q 003931 111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTI 190 (785)
Q Consensus 111 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 190 (785)
+|.++...+..|.++++|++|++++|++.+..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccC
Confidence 88888777777888888888888888888777778888888888888888888777778888888888888888887666
Q ss_pred CccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCC
Q 003931 191 PPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLL 270 (785)
Q Consensus 191 ~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 270 (785)
+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+.++...+ ...+|++|++++|.+.+..+..+..+
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l 247 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHL 247 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCc
Confidence 66677788888888888888777777777788888888888777767766633 34477888888877775444567777
Q ss_pred CCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEc
Q 003931 271 TKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDV 350 (785)
Q Consensus 271 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 350 (785)
++|++|++++|.+++..+..|..+++|+.|+|++|++++..|..|..+++|++|++++|++++..+..+..+++|+.+++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 77777777777777766677777777777777777777777777777777777777777777665556677777777777
Q ss_pred cCCcCccc
Q 003931 351 NTNQLHGE 358 (785)
Q Consensus 351 ~~n~l~~~ 358 (785)
++|.+.+.
T Consensus 328 ~~N~l~c~ 335 (477)
T 2id5_A 328 DSNPLACD 335 (477)
T ss_dssp CSSCEECS
T ss_pred cCCCccCc
Confidence 77776643
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.4e-34 Score=308.15 Aligned_cols=312 Identities=17% Similarity=0.183 Sum_probs=232.6
Q ss_pred CCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcE
Q 003931 27 SLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY 106 (785)
Q Consensus 27 ~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~ 106 (785)
.++++++|++++|.++.++...|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...|.++++|++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 3567777777777777776666777777777777777777666667777777777777777776 344455577777777
Q ss_pred EECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcC
Q 003931 107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 186 (785)
Q Consensus 107 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 186 (785)
|++++|.++...+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++. .++.+++|++|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 77777777755555567777777777777777766666677777777777777777654 245667777888877776
Q ss_pred cccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCcc
Q 003931 187 NYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE 266 (785)
Q Consensus 187 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 266 (785)
++. ...++|+.|++++|.+... |. ...++|+.|++++|.+++. + .++.+++|++|++++|.+.+..|..
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~-~--~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT-A--WLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccc-----CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc-H--HHcCCCCccEEECCCCcCCCcChhH
Confidence 532 3345778888888877654 22 2346788888888888742 2 3778888899999988888888888
Q ss_pred CcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCC
Q 003931 267 IGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLV 346 (785)
Q Consensus 267 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 346 (785)
+..+++|++|++++|++++ +|..+..+++|+.|++++|+++ .+|..+..+++|++|++++|+++.. + +..+++|+
T Consensus 268 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~ 342 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK 342 (390)
T ss_dssp GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCC
Confidence 8888999999999998875 4556677889999999999888 5566778888999999999988754 3 67788999
Q ss_pred EEEccCCcCccc
Q 003931 347 AFDVNTNQLHGE 358 (785)
Q Consensus 347 ~L~l~~n~l~~~ 358 (785)
.+++++|++.+.
T Consensus 343 ~L~l~~N~~~~~ 354 (390)
T 3o6n_A 343 NLTLSHNDWDCN 354 (390)
T ss_dssp EEECCSSCEEHH
T ss_pred EEEcCCCCccch
Confidence 999999988764
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.1e-33 Score=297.99 Aligned_cols=307 Identities=25% Similarity=0.359 Sum_probs=227.4
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCC
Q 003931 25 LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL 104 (785)
Q Consensus 25 ~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L 104 (785)
+..+++|++|+++++.+..++ +|..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. |.++++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTC
T ss_pred chhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCcC
Confidence 456777788888887777654 36777788888888877775544 777788888888888776 3442 5778888
Q ss_pred cEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccC
Q 003931 105 EYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 184 (785)
Q Consensus 105 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 184 (785)
++|++++|.+.+..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 888888887775433 7777888888888876553333 47778888888888887775433 777788888888888
Q ss_pred cCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCC
Q 003931 185 ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIP 264 (785)
Q Consensus 185 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 264 (785)
.+.+..+ +..+++|+.+++++|.+++..+ +..+++|++|++++|.++ .++. +..+++|++|++++|.+.+.
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~-- 258 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI-- 258 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--
Confidence 7764332 6777888888888888775544 777788888888888887 3443 77788888888888887753
Q ss_pred ccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCC
Q 003931 265 PEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMAS 344 (785)
Q Consensus 265 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 344 (785)
..+..+++|++|++++|.+++. ..+..+++|+.|++++|++++..|..++.+++|++|++++|++++..| +..+++
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 334 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSK 334 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTT
T ss_pred hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhc
Confidence 4577888888888888888754 457788888888888888887777778888888888888888886655 778888
Q ss_pred CCEEEccCCcCc
Q 003931 345 LVAFDVNTNQLH 356 (785)
Q Consensus 345 L~~L~l~~n~l~ 356 (785)
|+.+++++|.++
T Consensus 335 L~~L~l~~N~i~ 346 (347)
T 4fmz_A 335 MDSADFANQVIK 346 (347)
T ss_dssp CSEESSSCC---
T ss_pred cceeehhhhccc
Confidence 888888888764
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.2e-33 Score=297.93 Aligned_cols=305 Identities=27% Similarity=0.334 Sum_probs=221.6
Q ss_pred CCCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEE
Q 003931 3 DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL 82 (785)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 82 (785)
++++|++|++++|.++... .+..+++|++|++++|.++.+.+ |..+++|++|++++|.++.. ..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 4567788888888776542 36778888888888887777654 77788888888888877754 357778888888
Q ss_pred ECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcc
Q 003931 83 DLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSF 162 (785)
Q Consensus 83 ~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~ 162 (785)
++++|.+. .++. +..+++|++|++++|...... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 116 ~l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 116 YLNEDNIS-DISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp ECTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred ECcCCccc-Cchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence 88888777 3444 577888888888887555333 347778888888888887775433 67778888888888877
Q ss_pred cccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccc
Q 003931 163 TGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANL 242 (785)
Q Consensus 163 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~ 242 (785)
.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .
T Consensus 190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~--~ 260 (347)
T 4fmz_A 190 EDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN--A 260 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG--G
T ss_pred ccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Ch--h
Confidence 75433 6777788888888887765433 6777788888888888775443 7777888888888887763 33 2
Q ss_pred cCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCC
Q 003931 243 IGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLL 322 (785)
Q Consensus 243 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 322 (785)
+..+++|++|++++|.+.+. +.+..+++|++|++++|.+++..|..+..+++|+.|++++|++++..| +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 67778888888888877754 357777888888888888877777777788888888888888876555 77778888
Q ss_pred EEEccccccc
Q 003931 323 SLQLFSNNLS 332 (785)
Q Consensus 323 ~L~L~~n~l~ 332 (785)
+|++++|.++
T Consensus 337 ~L~l~~N~i~ 346 (347)
T 4fmz_A 337 SADFANQVIK 346 (347)
T ss_dssp EESSSCC---
T ss_pred eeehhhhccc
Confidence 8888887764
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-33 Score=304.57 Aligned_cols=311 Identities=18% Similarity=0.156 Sum_probs=213.8
Q ss_pred CCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEE
Q 003931 52 MPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDL 131 (785)
Q Consensus 52 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 131 (785)
++++++|++++|.++...+..|..+++|++|++++|.++ .++...|..+++|++|++++|.+++..+..|.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 467777777777777666666677777777777777776 3454455777777777777777776666677777777777
Q ss_pred EcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccc
Q 003931 132 RLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLS 211 (785)
Q Consensus 132 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 211 (785)
++++|.++...+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .++.+++|+.+++++|.++
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccc
Confidence 7777777754444467777777777777777766666677777777777777777643 2455677777777777665
Q ss_pred cCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhc
Q 003931 212 GGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEI 291 (785)
Q Consensus 212 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~ 291 (785)
+. ...++|++|++++|.+. .++.. ..++|+.|++++|.+.+. ..+..+++|++|++++|.+++..|..|
T Consensus 200 ~~-----~~~~~L~~L~l~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 268 (390)
T 3o6n_A 200 TL-----AIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF 268 (390)
T ss_dssp EE-----ECCSSCSEEECCSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred cc-----CCCCcceEEECCCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence 32 23456777777777776 33332 245677777777777653 456777777777777777777667777
Q ss_pred cCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcE
Q 003931 292 EKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNK 371 (785)
Q Consensus 292 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 371 (785)
..+++|+.|++++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+... + +..+++|+.
T Consensus 269 ~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~ 343 (390)
T 3o6n_A 269 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKN 343 (390)
T ss_dssp TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSE
T ss_pred cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCE
Confidence 777777777777777764 4555566777777777777776 4555566677777777777777643 2 556677777
Q ss_pred EEecCcccccc
Q 003931 372 FSVFTNNFSGS 382 (785)
Q Consensus 372 l~l~~n~l~~~ 382 (785)
+++++|++.+.
T Consensus 344 L~l~~N~~~~~ 354 (390)
T 3o6n_A 344 LTLSHNDWDCN 354 (390)
T ss_dssp EECCSSCEEHH
T ss_pred EEcCCCCccch
Confidence 77777776653
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-33 Score=319.36 Aligned_cols=313 Identities=17% Similarity=0.180 Sum_probs=262.5
Q ss_pred CCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcE
Q 003931 27 SLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY 106 (785)
Q Consensus 27 ~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~ 106 (785)
.+.+++.+++++|.+..+++..|.++++|++|++++|.+++..+..|..+++|++|++++|.+++ +|...|+++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCE
Confidence 45788888888888888888888888888888888888888888888888889999998888884 56666788888999
Q ss_pred EECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcC
Q 003931 107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNAL 186 (785)
Q Consensus 107 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 186 (785)
|+|++|.+++..+..|..+++|++|++++|.+++..|..|+++++|++|++++|.+++. .++.+++|++|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 99998888877666778888899999999988888888888889999999999988864 255678889999998887
Q ss_pred cccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCcc
Q 003931 187 NYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE 266 (785)
Q Consensus 187 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 266 (785)
++ +...++|+.|++++|.++...+.. .++|+.|++++|.+++. ..++.+++|+.|++++|.+.+..|..
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHH
Confidence 64 344568899999999887543322 36899999999999852 33888999999999999999998999
Q ss_pred CcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCC
Q 003931 267 IGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLV 346 (785)
Q Consensus 267 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 346 (785)
|+.+++|++|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|++++|.+++. + +..+++|+
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~ 348 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLK 348 (597)
T ss_dssp GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCS
T ss_pred hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCC
Confidence 9999999999999999986 5666788999999999999998 5777888999999999999999854 2 67889999
Q ss_pred EEEccCCcCcccc
Q 003931 347 AFDVNTNQLHGEL 359 (785)
Q Consensus 347 ~L~l~~n~l~~~~ 359 (785)
.|++++|.+.+..
T Consensus 349 ~L~l~~N~~~~~~ 361 (597)
T 3oja_B 349 NLTLSHNDWDCNS 361 (597)
T ss_dssp EEECCSSCEEHHH
T ss_pred EEEeeCCCCCChh
Confidence 9999999988653
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.5e-33 Score=316.02 Aligned_cols=313 Identities=18% Similarity=0.164 Sum_probs=277.7
Q ss_pred CCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcE
Q 003931 51 SMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLID 130 (785)
Q Consensus 51 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 130 (785)
.+.+++.+++++|.+..+.+..|..+++|++|++++|.+++ ++...|..+++|++|+|++|.+++..+..|.++++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 35789999999999998888889999999999999999985 55556799999999999999999988889999999999
Q ss_pred EEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecccccc
Q 003931 131 LRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQL 210 (785)
Q Consensus 131 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 210 (785)
|++++|.+++..+..|+++++|++|++++|.+.+..|..|+.+++|++|++++|.+++. .++.+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcc
Confidence 99999999977776789999999999999999998888999999999999999999865 356788999999999988
Q ss_pred ccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChh
Q 003931 211 SGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSE 290 (785)
Q Consensus 211 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~ 290 (785)
++ +...++|+.|++++|.+. .++.. ..++|+.|++++|.+.+ +..++.+++|++|++++|.+++..|..
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~-~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSIN-VVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCC-EEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cc-----ccCCchhheeeccCCccc-ccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence 75 344578999999999997 44433 23689999999999986 467899999999999999999999999
Q ss_pred ccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCc
Q 003931 291 IEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLN 370 (785)
Q Consensus 291 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 370 (785)
|+.+++|+.|+|++|.+++ +|..+..+++|++|++++|.++ .+|..++.+++|+.|++++|.+.+.. +..+++|+
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~ 348 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLK 348 (597)
T ss_dssp GTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCS
T ss_pred hcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCC
Confidence 9999999999999999996 5777788999999999999998 67778889999999999999998652 66788999
Q ss_pred EEEecCccccccC
Q 003931 371 KFSVFTNNFSGSI 383 (785)
Q Consensus 371 ~l~l~~n~l~~~~ 383 (785)
.+++++|++.+..
T Consensus 349 ~L~l~~N~~~~~~ 361 (597)
T 3oja_B 349 NLTLSHNDWDCNS 361 (597)
T ss_dssp EEECCSSCEEHHH
T ss_pred EEEeeCCCCCChh
Confidence 9999999998653
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.2e-31 Score=278.80 Aligned_cols=289 Identities=25% Similarity=0.270 Sum_probs=185.5
Q ss_pred CCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEEC
Q 003931 30 KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNL 109 (785)
Q Consensus 30 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~L 109 (785)
+++.++++++.++.++.. + .+++++|++++|.+++..+..|..+++|++|++++|.+++..|. .|.++++|++|++
T Consensus 32 ~l~~l~~~~~~l~~lp~~-~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKD-L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG-AFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCCSCCCS-C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEEC
T ss_pred CCeEEEecCCCccccCcc-C--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHH-HhcCCCCCCEEEC
Confidence 566666666666555422 2 14566666666666655555666666666666666666533233 3466666666666
Q ss_pred CCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccc--cCCccccCCCCCCEEEcccCcCc
Q 003931 110 TENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG--QIPSSLGQLKNLQHLDLRMNALN 187 (785)
Q Consensus 110 s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~ 187 (785)
++|.++. .|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+..+.++++|++|++++|.++
T Consensus 108 s~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 6666653 233222 466666666666665555556666666666666666642 45556666677777777777666
Q ss_pred ccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccC
Q 003931 188 YTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI 267 (785)
Q Consensus 188 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 267 (785)
. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++. +...++.+++|++|++++|.+. .+|.++
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee-ChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 3 343332 6677777777777766667777777777777777777743 3333677777888888888777 567777
Q ss_pred cCCCCCcEEECcCccccccCChhccC------CCCCCEEECcCCcccc--cCCccCcCCCCCCEEEccccc
Q 003931 268 GLLTKLQYLFLYRNNFSGPIPSEIEK------LTSLENLDLSGNQLSG--TIPPTLWNLTNLLSLQLFSNN 330 (785)
Q Consensus 268 ~~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~ 330 (785)
..+++|++|++++|.+++..+..|.. .+.++.+++++|++.. ..|..|..+++++.+++++|+
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 77888888888888887666666643 3678888998888763 456778888889999988874
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.7e-31 Score=278.26 Aligned_cols=287 Identities=21% Similarity=0.231 Sum_probs=173.1
Q ss_pred CccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEc
Q 003931 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVEL 157 (785)
Q Consensus 78 ~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 157 (785)
+++.++++++.++ .+|..+ .+.+++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 4555555555555 445433 245555666666655555555556666666666666665555555666666666666
Q ss_pred ccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecccccccc--CCchhccCCCCCCEEEccCCCCc
Q 003931 158 FNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSG--GLPLSLSNLSKLNDLGLSDNFLS 235 (785)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~ 235 (785)
++|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ..+..+.++++|++|++++|.++
T Consensus 108 s~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 108 SKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp CSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 666555 2333332 456666666666665555555666666666666666542 44556666777777777777766
Q ss_pred cccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccC
Q 003931 236 GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTL 315 (785)
Q Consensus 236 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 315 (785)
.+|... .++|++|++++|.+.+..|..+..+++|++|++++|.+++..+.++..+++|++|++++|+++ .+|..+
T Consensus 185 -~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 259 (330)
T 1xku_A 185 -TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGL 259 (330)
T ss_dssp -SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTT
T ss_pred -cCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhh
Confidence 455442 256777777777777766677777777777777777777666667777777777777777777 566667
Q ss_pred cCCCCCCEEEcccccccCCCCCCCCC------CCCCCEEEccCCcCcc--ccCccccccCCCcEEEecC
Q 003931 316 WNLTNLLSLQLFSNNLSGTIPPEIGS------MASLVAFDVNTNQLHG--ELPENISRLVKLNKFSVFT 376 (785)
Q Consensus 316 ~~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~ 376 (785)
..+++|++|++++|++++..+..+.. .+.++.+++++|.+.. ..|..+..+..++.+++++
T Consensus 260 ~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 260 ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecc
Confidence 77777777777777777655554432 2455666666665542 2233344444444443333
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2e-31 Score=280.52 Aligned_cols=288 Identities=25% Similarity=0.308 Sum_probs=223.6
Q ss_pred CCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEEC
Q 003931 30 KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNL 109 (785)
Q Consensus 30 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~L 109 (785)
+++.++++++.++.++... .++|++|++++|.+++..+..|.++++|++|++++|.+++ ++...|.++++|++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK-IHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc-cCHhHhhCcCCCCEEEC
Confidence 6888888888887766433 2578888888888887777788888888888888888874 44444588888888888
Q ss_pred CCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccc--ccCCccccCCCCCCEEEcccCcCc
Q 003931 110 TENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT--GQIPSSLGQLKNLQHLDLRMNALN 187 (785)
Q Consensus 110 s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~ 187 (785)
++|.++. +|..+. ++|++|++++|++++..+..|.++++|++|++++|.++ +..+..+..+ +|++|++++|.++
T Consensus 110 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 8888874 343333 68888888888888766667888888888888888885 3666777777 8888888888887
Q ss_pred ccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccC
Q 003931 188 YTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEI 267 (785)
Q Consensus 188 ~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 267 (785)
+ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++ +++..++.+++|++|++++|.+. .+|..+
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 5 454443 688888888888888777888888888888998888884 44444788888999999998888 677778
Q ss_pred cCCCCCcEEECcCccccccCChhccC------CCCCCEEECcCCccc--ccCCccCcCCCCCCEEEccccc
Q 003931 268 GLLTKLQYLFLYRNNFSGPIPSEIEK------LTSLENLDLSGNQLS--GTIPPTLWNLTNLLSLQLFSNN 330 (785)
Q Consensus 268 ~~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~Ls~n~l~--~~~p~~l~~l~~L~~L~L~~n~ 330 (785)
..+++|++|++++|.+++..+..|.. ...|+.|++++|++. +..|..|..+++|+.+++++|+
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 88899999999999988776666654 367889999999887 5677888899999999998875
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=4.3e-31 Score=277.91 Aligned_cols=286 Identities=21% Similarity=0.220 Sum_probs=146.2
Q ss_pred ccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcc
Q 003931 79 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELF 158 (785)
Q Consensus 79 L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~ 158 (785)
++.++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|++++..|..|+++++|++|+++
T Consensus 35 l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 35 LRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp TTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 444444444443 334322 1344444444444444444444444444444444444444444444444444444444
Q ss_pred cCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecccccccc--CCchhccCCCCCCEEEccCCCCcc
Q 003931 159 NNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSG--GLPLSLSNLSKLNDLGLSDNFLSG 236 (785)
Q Consensus 159 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~--~~~~~l~~l~~L~~L~L~~n~l~~ 236 (785)
+|.++ .+|..+. ++|++|++++|.++...+..+..+++|++|++++|.++. ..+..+..+ +|++|++++|.++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~- 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT- 185 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-
Confidence 44444 2222222 344445555444444333344444555555555554432 334444444 5555555555555
Q ss_pred ccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCc
Q 003931 237 EISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLW 316 (785)
Q Consensus 237 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~ 316 (785)
.+|.... ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+.+|..+++|+.|++++|+++ .+|..+.
T Consensus 186 ~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 261 (332)
T 2ft3_A 186 GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP 261 (332)
T ss_dssp SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG
T ss_pred ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh
Confidence 3443321 45666666666666555556666666666666666666655556666666666666666666 5555666
Q ss_pred CCCCCCEEEcccccccCCCCCCCCC------CCCCCEEEccCCcCc--cccCccccccCCCcEEEecCc
Q 003931 317 NLTNLLSLQLFSNNLSGTIPPEIGS------MASLVAFDVNTNQLH--GELPENISRLVKLNKFSVFTN 377 (785)
Q Consensus 317 ~l~~L~~L~L~~n~l~~~~p~~~~~------l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~l~l~~n 377 (785)
.+++|++|++++|++++..+..+.. ...|+.+++++|.+. +..|..+..+++|+.+++++|
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 6666666666666666554444433 245566666666654 334445555555555555444
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=3.6e-32 Score=282.87 Aligned_cols=247 Identities=28% Similarity=0.435 Sum_probs=108.2
Q ss_pred CcEEECCCCCCcc--cCCccccCCCCCcEEEcCC-CcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEE
Q 003931 104 LEYLNLTENQFQG--KLSPNVSKLSNLIDLRLAT-NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180 (785)
Q Consensus 104 L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 180 (785)
+++|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..|+++++|++|++++|.+.+.+|..+.++++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 3344444444433 3333444444444444442 334433444444444444444444444444444444444444444
Q ss_pred cccCcCcccCCccccCCcccCeeeccccccccCCchhccCCC-CCCEEEccCCCCccccCccccCCCCCCCEEEeecCcC
Q 003931 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLS-KLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF 259 (785)
Q Consensus 181 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 259 (785)
+++|.+++.+|..++.+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|.. ++.++ |++|++++|.+
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSRNML 209 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCSSEE
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcCCcc
Confidence 444444444444444444444444444444444444444443 4444444444444333333 33333 44444444444
Q ss_pred cccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCC
Q 003931 260 MGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEI 339 (785)
Q Consensus 260 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~ 339 (785)
.+..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|..
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 444444444444444444444444433332 444444444444444444444444444444444444444444444433
Q ss_pred CCCCCCCEEEccCCc
Q 003931 340 GSMASLVAFDVNTNQ 354 (785)
Q Consensus 340 ~~l~~L~~L~l~~n~ 354 (785)
+.+++|+.+++++|.
T Consensus 288 ~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 GNLQRFDVSAYANNK 302 (313)
T ss_dssp TTGGGSCGGGTCSSS
T ss_pred ccccccChHHhcCCC
Confidence 444444444444443
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.3e-31 Score=278.58 Aligned_cols=248 Identities=27% Similarity=0.424 Sum_probs=159.5
Q ss_pred CCCcEEEcCCCcccc--cCCcCCCCCCCCCEEEccc-CcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCe
Q 003931 126 SNLIDLRLATNKFSG--PIPGDIGSMSNLQLVELFN-NSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSY 202 (785)
Q Consensus 126 ~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 202 (785)
.+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467777777777776 6677777777777777774 6777667777777777777777777777667777777777777
Q ss_pred eeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCC-CCCEEEeecCcCcccCCccCcCCCCCcEEECcCc
Q 003931 203 LALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWT-ELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRN 281 (785)
Q Consensus 203 L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 281 (785)
|++++|.+++.+|..+..+++|++|++++|.+++.+|.. ++.++ +|++|++++|.+.+.+|..++.++ |++|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 777777777666666666677777777777666666655 45554 666666666666666666666655 666666666
Q ss_pred cccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCc
Q 003931 282 NFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPE 361 (785)
Q Consensus 282 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~ 361 (785)
.+++..|..|..+++|+.|++++|.+++.+|. +..+++|++|++++|++++.+|..+..+++|+.|++++|++++.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 66666666666666666666666666644443 55556666666666666655555555556666666665555555554
Q ss_pred cccccCCCcEEEecCc
Q 003931 362 NISRLVKLNKFSVFTN 377 (785)
Q Consensus 362 ~~~~l~~L~~l~l~~n 377 (785)
. ..+++|+.+++.+|
T Consensus 287 ~-~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANN 301 (313)
T ss_dssp S-TTGGGSCGGGTCSS
T ss_pred C-ccccccChHHhcCC
Confidence 3 33444444434333
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.4e-35 Score=322.75 Aligned_cols=355 Identities=19% Similarity=0.155 Sum_probs=161.3
Q ss_pred CCCcEEEccCCCCCCCcccc-ccCCCCCCEEeCCCCCCCCCC----ccccCCCCCCcEEEccCCCCcccCCccC-CCCC-
Q 003931 5 SELQYLSVYDNNLNGAIPFQ-LSSLRKVRYLDLGGNFLETPD----WSKFSSMPSLTHLGLYLNELTLEFPSFI-LTCR- 77 (785)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~i~~~~----~~~f~~l~~L~~L~L~~n~i~~~~~~~~-~~l~- 77 (785)
+++++|++++|+++...... +..+++|++|++++|.++... +.+|..+++|++|++++|.++...+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45677777777766443332 566667777777777665332 2334555666666666665554322221 1222
Q ss_pred ---CccEEECCCCCCcc----cCChhhhcCCCCCcEEECCCCCCcccCCccc-----cCCCCCcEEEcCCCcccccCCcC
Q 003931 78 ---NLTYLDLSLNKLSG----LIPERLFTNLGKLEYLNLTENQFQGKLSPNV-----SKLSNLIDLRLATNKFSGPIPGD 145 (785)
Q Consensus 78 ---~L~~L~Ls~n~i~~----~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~-----~~l~~L~~L~L~~n~~~~~~~~~ 145 (785)
+|++|++++|.++. .++. .|..+++|++|++++|.+++..+..+ ...++|++|++++|.+++....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~- 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSS-TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE- 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHH-HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH-
T ss_pred CCCceeEEEccCCCCCHHHHHHHHH-HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH-
Confidence 45555555555542 1122 23455555555555555543222221 1133455555555544432100
Q ss_pred CCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCcccc-----CCcccCeeeccccccccC----Cch
Q 003931 146 IGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELG-----LCTNLSYLALAVNQLSGG----LPL 216 (785)
Q Consensus 146 l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~i~~~----~~~ 216 (785)
.++..+..+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++.
T Consensus 161 -------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 161 -------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp -------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred -------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 1122333344444444444444332222221 123445555555544432 233
Q ss_pred hccCCCCCCEEEccCCCCccc----cCccccCCCCCCCEEEeecCcCccc----CCccCcCCCCCcEEECcCccccccCC
Q 003931 217 SLSNLSKLNDLGLSDNFLSGE----ISANLIGNWTELESLQIQNNSFMGN----IPPEIGLLTKLQYLFLYRNNFSGPIP 288 (785)
Q Consensus 217 ~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p 288 (785)
.+..+++|++|++++|.+.+. +....+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 444445555555555554421 1112122344555555555554432 23334445555555555555543322
Q ss_pred hhccC-----CCCCCEEECcCCccccc----CCccCcCCCCCCEEEcccccccCCCCCCCCC-----CCCCCEEEccCCc
Q 003931 289 SEIEK-----LTSLENLDLSGNQLSGT----IPPTLWNLTNLLSLQLFSNNLSGTIPPEIGS-----MASLVAFDVNTNQ 354 (785)
Q Consensus 289 ~~~~~-----l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~l~~n~ 354 (785)
..+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++|.
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 22221 13555555555555433 2333444455555555555544322222211 3455555555555
Q ss_pred Ccc----ccCccccccCCCcEEEecCcccc
Q 003931 355 LHG----ELPENISRLVKLNKFSVFTNNFS 380 (785)
Q Consensus 355 l~~----~~~~~~~~l~~L~~l~l~~n~l~ 380 (785)
+++ .+|..+..+++|+++++++|+++
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 543 34444444555555555555444
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6.8e-35 Score=322.55 Aligned_cols=330 Identities=22% Similarity=0.159 Sum_probs=234.4
Q ss_pred CCCCCcEEEccCCCCCCC----ccccccCCCCCCEEeCCCCCCCCCCcccc-CCCC----CCcEEEccCCCCcc----cC
Q 003931 3 DLSELQYLSVYDNNLNGA----IPFQLSSLRKVRYLDLGGNFLETPDWSKF-SSMP----SLTHLGLYLNELTL----EF 69 (785)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~i~~~~~~~f-~~l~----~L~~L~L~~n~i~~----~~ 69 (785)
.+++|++|++++|.++.. ++..+..+++|++|++++|.+.......+ ..++ +|++|++++|.++. ..
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 478999999999998843 46678889999999999999876444333 3344 79999999999985 45
Q ss_pred CccCCCCCCccEEECCCCCCcccCChh----hhcCCCCCcEEECCCCCCcccC----CccccCCCCCcEEEcCCCccccc
Q 003931 70 PSFILTCRNLTYLDLSLNKLSGLIPER----LFTNLGKLEYLNLTENQFQGKL----SPNVSKLSNLIDLRLATNKFSGP 141 (785)
Q Consensus 70 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~----~f~~l~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~L~~n~~~~~ 141 (785)
+..+..+++|++|++++|.+++..+.. ++...++|++|++++|.+++.. +..+..+++|++|++++|.+.+.
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 888999999999999999987543332 2334678999999999998644 55667789999999999998765
Q ss_pred CCcCCC-----CCCCCCEEEcccCccccc----CCccccCCCCCCEEEcccCcCcccC-----CccccCCcccCeeeccc
Q 003931 142 IPGDIG-----SMSNLQLVELFNNSFTGQ----IPSSLGQLKNLQHLDLRMNALNYTI-----PPELGLCTNLSYLALAV 207 (785)
Q Consensus 142 ~~~~l~-----~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~ 207 (785)
.+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.++... +..+..+++|++|++++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 443333 356899999999988753 4666778889999999998876532 22233577888888888
Q ss_pred cccccC----CchhccCCCCCCEEEccCCCCccccCcc----ccCCCCCCCEEEeecCcCccc----CCccCcCCCCCcE
Q 003931 208 NQLSGG----LPLSLSNLSKLNDLGLSDNFLSGEISAN----LIGNWTELESLQIQNNSFMGN----IPPEIGLLTKLQY 275 (785)
Q Consensus 208 n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~----~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~ 275 (785)
|.+++. ++..+..+++|++|++++|.+.+..+.. .....++|++|++++|.+++. ++..+..+++|++
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence 887753 4566667788888888888776432221 112335677777777776654 3444555667777
Q ss_pred EECcCccccccCChhccC-----CCCCCEEECcCCcccc----cCCccCcCCCCCCEEEccccccc
Q 003931 276 LFLYRNNFSGPIPSEIEK-----LTSLENLDLSGNQLSG----TIPPTLWNLTNLLSLQLFSNNLS 332 (785)
Q Consensus 276 L~L~~n~l~~~~p~~~~~-----l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~ 332 (785)
|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..+++|++|++++|+++
T Consensus 346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 777777665544433332 4566677777666664 45555566666666666666654
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=7.3e-29 Score=263.29 Aligned_cols=284 Identities=23% Similarity=0.202 Sum_probs=198.1
Q ss_pred CCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcE
Q 003931 27 SLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY 106 (785)
Q Consensus 27 ~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~ 106 (785)
.|+.....+++++.++.++...+ ++|++|++++|.+++..+..|.++++|++|++++|.+++ ++...|.++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCccccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCE
Confidence 45566667888888887764332 478888888888887777778888888888888888874 44455688888888
Q ss_pred EECCCCCCcccCCccccCCCCCcEEEcCCCcccccCC-cCCCCCCCCCEEEcccC-cccccCCccccCCCCCCEEEcccC
Q 003931 107 LNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIP-GDIGSMSNLQLVELFNN-SFTGQIPSSLGQLKNLQHLDLRMN 184 (785)
Q Consensus 107 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~l~~n 184 (785)
|++++|.+++..+..|.++++|++|++++|++++..+ ..+.++++|++|++++| .+.+..+..++++++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 8888888886666668888888888888888885444 46788888888888888 466666778888889999999999
Q ss_pred cCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccc--cCCCCCCCEEEeecCcCccc
Q 003931 185 ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANL--IGNWTELESLQIQNNSFMGN 262 (785)
Q Consensus 185 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~--~~~l~~L~~L~L~~n~l~~~ 262 (785)
.+++..|..++.+++|++|++++|.++...+..+..+++|+.|++++|.+++..+... ......++.++++++.+.+
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~- 263 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD- 263 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH-
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC-
Confidence 8888888888888999999999988865444445567888888888888774322210 1122334444444443332
Q ss_pred CCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCC
Q 003931 263 IPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGT 334 (785)
Q Consensus 263 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 334 (785)
+.+. .+|.++..+++|+.|++++|+++...+..|..+++|++|++++|++.+.
T Consensus 264 ------------------~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 264 ------------------ESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp ------------------HHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ------------------cchh-hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 1111 3455666667777777777776633222346667777777777766643
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.1e-29 Score=262.95 Aligned_cols=283 Identities=20% Similarity=0.194 Sum_probs=180.3
Q ss_pred CCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcE
Q 003931 51 SMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLID 130 (785)
Q Consensus 51 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 130 (785)
.|+...+.+.+++.++.+ |..+. ++|++|++++|.++ .++...|.++++|++|++++|.+++..+..|.++++|++
T Consensus 29 ~C~~~~~c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSI-PSGLT--EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCSSC-CTTCC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcccc-ccccc--ccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 345555566666666643 33332 36677777777766 345544566777777777777666666666666667777
Q ss_pred EEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCC-ccccCCCCCCEEEcccC-cCcccCCccccCCcccCeeecccc
Q 003931 131 LRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIP-SSLGQLKNLQHLDLRMN-ALNYTIPPELGLCTNLSYLALAVN 208 (785)
Q Consensus 131 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 208 (785)
|++++|++++..+..++++++|++|++++|.+.+..+ ..+..+++|++|++++| .+....+..++.+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 7777776665444446666666677766666664333 35666666666666666 355444555666666666666666
Q ss_pred ccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCC
Q 003931 209 QLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIP 288 (785)
Q Consensus 209 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 288 (785)
.+++..|..+..+++|++|++++|.+. .++..+++.+++|++|++++|.+.+..+..+..
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~------------------- 244 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELST------------------- 244 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC-----------------------
T ss_pred CcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccc-------------------
Confidence 666555666666666666666666654 444443444555566666555555432221110
Q ss_pred hhccCCCCCCEEECcCCcccc----cCCccCcCCCCCCEEEcccccccCCCCCC-CCCCCCCCEEEccCCcCccccC
Q 003931 289 SEIEKLTSLENLDLSGNQLSG----TIPPTLWNLTNLLSLQLFSNNLSGTIPPE-IGSMASLVAFDVNTNQLHGELP 360 (785)
Q Consensus 289 ~~~~~l~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~l~~n~l~~~~~ 360 (785)
......++.++++++.+++ .+|..+..+++|++|++++|+++ .+|.. ++.+++|+++++++|.+.+..|
T Consensus 245 --~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 245 --GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred --ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 1234566777777777665 36778899999999999999999 55555 6899999999999999988765
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=2.1e-28 Score=254.32 Aligned_cols=281 Identities=21% Similarity=0.185 Sum_probs=163.5
Q ss_pred EEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCccc--CChhhhcCCCCCcEEECC
Q 003931 33 YLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGL--IPERLFTNLGKLEYLNLT 110 (785)
Q Consensus 33 ~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~--~~~~~f~~l~~L~~L~Ls 110 (785)
.++++++.++.++...+ ++|++|++++|.++.+.+..|.++++|++|++++|.++.. .+..+ ..+++|++|+++
T Consensus 11 ~l~c~~~~l~~ip~~~~---~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCSSCCSCCC---TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECC
T ss_pred EEEcCCCCcccCCCCCC---CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECC
Confidence 34444444444432211 3455555555555444444445555555555555554411 12222 345566666666
Q ss_pred CCCCcccCCccccCCCCCcEEEcCCCcccccCC-cCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcc-
Q 003931 111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIP-GDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY- 188 (785)
Q Consensus 111 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~- 188 (785)
+|.+.. .+..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 665552 34445556666666666666654433 355666666666666666665556666666666666666666654
Q ss_pred cCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCc
Q 003931 189 TIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIG 268 (785)
Q Consensus 189 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 268 (785)
..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .++...+..+++|++|++++|.+.+..|..+.
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCS-BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccC-ccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 45666666666777777777666666666677777777777777776 34443467777777777777777777777777
Q ss_pred CCC-CCcEEECcCccccccCC--hhccCCCCCCEEECcCCcccccCCccCcCCC
Q 003931 269 LLT-KLQYLFLYRNNFSGPIP--SEIEKLTSLENLDLSGNQLSGTIPPTLWNLT 319 (785)
Q Consensus 269 ~l~-~L~~L~L~~n~l~~~~p--~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 319 (785)
.++ +|++|++++|.+++..+ .....+...+.+....+.+....|..+.+.+
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~ 298 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP 298 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCB
T ss_pred hhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCce
Confidence 774 78888888887765321 1112223344455666666666676665543
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=5.3e-28 Score=251.36 Aligned_cols=229 Identities=24% Similarity=0.333 Sum_probs=112.6
Q ss_pred CCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccC--CccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcE
Q 003931 29 RKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEF--PSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY 106 (785)
Q Consensus 29 ~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~--~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~ 106 (785)
++|++|++++|.++.++...|.++++|++|++++|.++... +..+..+++|++|++++|.+. .+|.. |..+++|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~-~~~l~~L~~ 105 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSN-FLGLEQLEH 105 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEE-EETCTTCCE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhh-cCCCCCCCE
Confidence 34555555555555544444555555555555555544221 333334455555555555554 23333 244555555
Q ss_pred EECCCCCCcccCC-ccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccc-cCCccccCCCCCCEEEcccC
Q 003931 107 LNLTENQFQGKLS-PNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG-QIPSSLGQLKNLQHLDLRMN 184 (785)
Q Consensus 107 L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n 184 (785)
|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+ ..|..+..+++|++|++++|
T Consensus 106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC
Confidence 5555555543333 344555555555555555554444445555555555555555543 34444555555555555555
Q ss_pred cCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCC-CCCCEEEeecCcCc
Q 003931 185 ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNW-TELESLQIQNNSFM 260 (785)
Q Consensus 185 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l-~~L~~L~L~~n~l~ 260 (785)
.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.. +..+ ++|++|++++|.+.
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE-LQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS-CCCCCTTCCEEECTTCCEE
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH-HHhhhccCCEEEccCCCee
Confidence 555444445555555555555555555444444555555555555555554433333 3444 24555555555544
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=5.1e-27 Score=257.81 Aligned_cols=249 Identities=24% Similarity=0.238 Sum_probs=140.1
Q ss_pred ccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcc
Q 003931 79 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELF 158 (785)
Q Consensus 79 L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~ 158 (785)
.+.++.++..++ .+|..+ .+++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI---PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCC---CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 345666666665 456533 2456666666666666556666666666666666666665555556666666666666
Q ss_pred cCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcccc
Q 003931 159 NNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEI 238 (785)
Q Consensus 159 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 238 (785)
+|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++ |...+.+
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~------------------------~~~l~~i 187 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE------------------------LKKLEYI 187 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCC------------------------CTTCCEE
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCC------------------------CCCcccc
Confidence 6666555445555555666666665555544444444445555555444 3222234
Q ss_pred CccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCC
Q 003931 239 SANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNL 318 (785)
Q Consensus 239 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 318 (785)
+...+.++++|++|++++|.+.+. | .+..+++|++|++++|.+++..|..|.++++|+.|++++|++++..|..|..+
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 265 (452)
T 3zyi_A 188 SEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265 (452)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred ChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCC
Confidence 433344455555555555554432 2 34555555556666665555555555566666666666666655555556666
Q ss_pred CCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcc
Q 003931 319 TNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHG 357 (785)
Q Consensus 319 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 357 (785)
++|++|++++|++++..+..+..+++|+.+++++|.+..
T Consensus 266 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 266 ASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred CCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 666666666666655555555556666666666665543
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.8e-27 Score=257.02 Aligned_cols=248 Identities=23% Similarity=0.230 Sum_probs=132.1
Q ss_pred ccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcc
Q 003931 79 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELF 158 (785)
Q Consensus 79 L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~ 158 (785)
.+.++.++..++ .+|..+ .+++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 445666666665 556543 2456666666666665555556666666666666666655555555555556666665
Q ss_pred cCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcccc
Q 003931 159 NNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEI 238 (785)
Q Consensus 159 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 238 (785)
+|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++ |...+.+
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~------------------------~~~l~~i 176 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE------------------------LKRLSYI 176 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCC------------------------CTTCCEE
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCC------------------------CCCccee
Confidence 5555544444555555555555555555544444444444444444444 2222233
Q ss_pred CccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCC
Q 003931 239 SANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNL 318 (785)
Q Consensus 239 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 318 (785)
+...+.++++|++|++++|.++. +| .+..+++|++|+|++|.+++..|..|.++++|+.|++++|++++..+..|..+
T Consensus 177 ~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 254 (440)
T 3zyj_A 177 SEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254 (440)
T ss_dssp CTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC
T ss_pred CcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCC
Confidence 33334444444444444444442 22 24445555555555555555555555555555555555555555555555555
Q ss_pred CCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCc
Q 003931 319 TNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLH 356 (785)
Q Consensus 319 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~ 356 (785)
++|++|+|++|++++..+..+..+++|+.+++++|.+.
T Consensus 255 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 255 QSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 55555555555555444444555555555555555554
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.9e-27 Score=248.52 Aligned_cols=225 Identities=24% Similarity=0.340 Sum_probs=131.7
Q ss_pred CCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEE
Q 003931 101 LGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180 (785)
Q Consensus 101 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 180 (785)
..++++|+|++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..++++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 456667777776666 45555666667777777777666 56666667777777777777666 5566677777777777
Q ss_pred cccCcCcccCCccccC---------CcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCE
Q 003931 181 LRMNALNYTIPPELGL---------CTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELES 251 (785)
Q Consensus 181 l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 251 (785)
+++|.+.+.+|..++. +++|++|++++|.++ .+|..+.++++|++|++++|.++ .+|.. ++.+++|++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~-l~~l~~L~~ 233 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKLEE 233 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGG-GGGCTTCCE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchh-hccCCCCCE
Confidence 7776666666655443 555555555555555 44445555555555555555555 23333 445555555
Q ss_pred EEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccc
Q 003931 252 LQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNL 331 (785)
Q Consensus 252 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l 331 (785)
|++++|.+.+.+|..++.+++|++|++++|++.+.+|..+..+++|+.|++++|++.+.+|..++.+++|+.+++..+.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555554433
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=4.9e-30 Score=293.13 Aligned_cols=408 Identities=14% Similarity=0.097 Sum_probs=185.4
Q ss_pred cCCCCCCCCCEEEcccCccc---ccCCcccc------------CCCCCCEEEcccCcCcccCCccccC-Cc-ccCeeecc
Q 003931 144 GDIGSMSNLQLVELFNNSFT---GQIPSSLG------------QLKNLQHLDLRMNALNYTIPPELGL-CT-NLSYLALA 206 (785)
Q Consensus 144 ~~l~~l~~L~~L~L~~n~~~---~~~~~~l~------------~l~~L~~L~l~~n~l~~~~~~~~~~-l~-~L~~L~l~ 206 (785)
..+..+++|+.|+++++... +.+|..++ .+++|++|++++|.+++..+..+.. ++ +|++|+++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence 33456677888888775431 22332222 4556666666666555443333333 22 25555555
Q ss_pred ccc-ccc-CCchhccCCCCCCEEEccCCCCccccCc---cccCCCCCCCEEEeecCcCcc----cCCccCcCCCCCcEEE
Q 003931 207 VNQ-LSG-GLPLSLSNLSKLNDLGLSDNFLSGEISA---NLIGNWTELESLQIQNNSFMG----NIPPEIGLLTKLQYLF 277 (785)
Q Consensus 207 ~n~-i~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~ 277 (785)
+|. ++. .++....++++|++|++++|.+++.-.. ..+..+++|++|++++|.+.+ .++..+..+++|++|+
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~ 226 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK 226 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe
Confidence 554 111 1111223455555555555554322110 113344455555555554431 1222233444455555
Q ss_pred CcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcc
Q 003931 278 LYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHG 357 (785)
Q Consensus 278 L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 357 (785)
+++|.+.+ +|..+..+++|++|+++.+...... +..+..+..+++|+.++++.+. .+
T Consensus 227 L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~---------------------~~~~~~l~~~~~L~~L~l~~~~-~~ 283 (592)
T 3ogk_B 227 VGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGM---------------------PEKYMNLVFPRKLCRLGLSYMG-PN 283 (592)
T ss_dssp CSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTC---------------------TTSSSCCCCCTTCCEEEETTCC-TT
T ss_pred ccCccHHH-HHHHHhhhhHHHhhcccccccccch---------------------HHHHHHhhccccccccCccccc-hh
Confidence 55444443 3344444444554444432111000 1122233444445555444431 12
Q ss_pred ccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccccCCCCCcEEEccC-----------C
Q 003931 358 ELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHELCSGFALEELTVNG-----------N 426 (785)
Q Consensus 358 ~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~-----------n 426 (785)
.+|..+..+++|++|++++|.+++.....+....++|+.|+++++-..+.++.....+++|++|++++ +
T Consensus 284 ~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~ 363 (592)
T 3ogk_B 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363 (592)
T ss_dssp TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTC
T ss_pred HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccC
Confidence 33444444455555555554443322211111223555555552211112222223445566666662 2
Q ss_pred CCccc-CCccccCCCCCcEEEcccCccccccCcccCC-CCCCcEEEcc----CCeeeee-----cccchhcccccceecc
Q 003931 427 NFTGS-LPACLRNCSNLNRVRFDGNQFTGNITKAFGV-HPRLDFIRLS----GNQFVGE-----ISPDWGECRNLSNLQL 495 (785)
Q Consensus 427 ~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~Ls----~n~l~~~-----~~~~~~~l~~L~~L~L 495 (785)
.+++. ++.....+++|++|+++.|.+++.....++. +++|+.|+++ .|.+++. ++..+..+++|+.|++
T Consensus 364 ~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L 443 (592)
T 3ogk_B 364 LVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF 443 (592)
T ss_dssp CCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred ccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEE
Confidence 33322 1122344666666666666665554444443 5666666664 4444432 2223455666666666
Q ss_pred ccce--eeeccCcchh-ccccCCeeecccCccccC-CCcccccCCCCCeecccCCcccCc-CCcccccCCCCCeEecCCC
Q 003931 496 DRNR--ISGGIPAELG-NLTRLGVLSLDSNELTGK-IPTDLGKLVKLFNLNLSNNHLTGE-IPKSISNLTELAYLDLSNN 570 (785)
Q Consensus 496 ~~n~--i~~~~~~~~~-~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~-~p~~~~~l~~L~~L~Ls~n 570 (785)
++|. +++..+..+. .+++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|
T Consensus 444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n 523 (592)
T 3ogk_B 444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGY 523 (592)
T ss_dssp ECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESC
T ss_pred ecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCC
Confidence 5332 4433333332 255666666666665542 233345556666666666665433 2233345566666666666
Q ss_pred cCcc
Q 003931 571 KLTG 574 (785)
Q Consensus 571 ~l~~ 574 (785)
+++.
T Consensus 524 ~it~ 527 (592)
T 3ogk_B 524 RASM 527 (592)
T ss_dssp BCCT
T ss_pred cCCH
Confidence 6554
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.2e-27 Score=245.75 Aligned_cols=225 Identities=24% Similarity=0.155 Sum_probs=150.2
Q ss_pred cEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCC
Q 003931 8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLN 87 (785)
Q Consensus 8 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n 87 (785)
++++.+++.++.++. . -.++|++|++++|.++.+.+.+|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~-~--~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-G--IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCT-T--CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCc-C--CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 466777766664432 2 2457777777777777777667777777777777777777666777777777777777777
Q ss_pred C-CcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccC
Q 003931 88 K-LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI 166 (785)
Q Consensus 88 ~-i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 166 (785)
. +. .++...|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..++.+++|++|++++|.+++..
T Consensus 91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 5 55 444444567777777777777777666666777777777777777776555555666777777777777666555
Q ss_pred CccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcc
Q 003931 167 PSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSG 236 (785)
Q Consensus 167 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 236 (785)
+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 5556666667777776666666666666666666666666666665555556666666666666666553
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.1e-27 Score=246.22 Aligned_cols=225 Identities=21% Similarity=0.227 Sum_probs=144.2
Q ss_pred cEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEccc
Q 003931 80 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFN 159 (785)
Q Consensus 80 ~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~ 159 (785)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45566666655 455432 34666666666666655555666666666666666666655566666666666666666
Q ss_pred Cc-ccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcccc
Q 003931 160 NS-FTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEI 238 (785)
Q Consensus 160 n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 238 (785)
|. +....|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-cc
Confidence 65 55554566666666666666666666555666666666666666666666555555666666677777766666 44
Q ss_pred CccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccc
Q 003931 239 SANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSG 309 (785)
Q Consensus 239 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~ 309 (785)
+...+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++..
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 44446666667777777776666666666667777777777777766555556667777777777776654
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.4e-26 Score=254.23 Aligned_cols=248 Identities=22% Similarity=0.248 Sum_probs=211.4
Q ss_pred CcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccc
Q 003931 128 LIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAV 207 (785)
Q Consensus 128 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 207 (785)
...++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+..|..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456666666666 3454443 5778888888888877777788888888888888888877777888888888888888
Q ss_pred cccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecC-cCcccCCccCcCCCCCcEEECcCcccccc
Q 003931 208 NQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNN-SFMGNIPPEIGLLTKLQYLFLYRNNFSGP 286 (785)
Q Consensus 208 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 286 (785)
|.+++..+..|..+++|++|++++|.++ .++...+.++++|++|++++| .+....+..|..+++|++|++++|.+++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 8888777777888999999999999998 666666999999999999995 55544455799999999999999999854
Q ss_pred CChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCcccccc
Q 003931 287 IPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRL 366 (785)
Q Consensus 287 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 366 (785)
| .+..+++|+.|++++|.+++..|..|.++++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 4 48899999999999999999999999999999999999999999889999999999999999999998888888999
Q ss_pred CCCcEEEecCccccc
Q 003931 367 VKLNKFSVFTNNFSG 381 (785)
Q Consensus 367 ~~L~~l~l~~n~l~~ 381 (785)
++|+.+++++|.+..
T Consensus 290 ~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 290 RYLVELHLHHNPWNC 304 (452)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cCCCEEEccCCCcCC
Confidence 999999999998764
No 60
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.3e-30 Score=295.90 Aligned_cols=434 Identities=15% Similarity=0.131 Sum_probs=240.1
Q ss_pred CccccccCCCCCCEEeCCCCCCC---CC---Ccccc---------CCCCCCcEEEccCCCCcccCCccCCC-CC-CccEE
Q 003931 20 AIPFQLSSLRKVRYLDLGGNFLE---TP---DWSKF---------SSMPSLTHLGLYLNELTLEFPSFILT-CR-NLTYL 82 (785)
Q Consensus 20 ~~~~~~~~l~~L~~L~L~~n~i~---~~---~~~~f---------~~l~~L~~L~L~~n~i~~~~~~~~~~-l~-~L~~L 82 (785)
.++..+.++++|++|+++++... .. ..+.+ ..+++|++|+|++|.+++..+..+.. ++ +|++|
T Consensus 64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L 143 (592)
T 3ogk_B 64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL 143 (592)
T ss_dssp CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence 34445567778888888765320 00 11111 15677778888777766555554444 23 37777
Q ss_pred ECCCCC-CcccCChhhhcCCCCCcEEECCCCCCccc----CCccccCCCCCcEEEcCCCcccc----cCCcCCCCCCCCC
Q 003931 83 DLSLNK-LSGLIPERLFTNLGKLEYLNLTENQFQGK----LSPNVSKLSNLIDLRLATNKFSG----PIPGDIGSMSNLQ 153 (785)
Q Consensus 83 ~Ls~n~-i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~----~~~~~~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~ 153 (785)
++++|. +.......+..++++|++|+|++|.+++. ++..+..+++|++|++++|.+++ .++..+.++++|+
T Consensus 144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~ 223 (592)
T 3ogk_B 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223 (592)
T ss_dssp EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence 777775 21111112234677777777777776544 22334566777777777777752 2233345677777
Q ss_pred EEEcccCcccccCCccccCCCCCCEEEcccCcCc---ccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEcc
Q 003931 154 LVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN---YTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLS 230 (785)
Q Consensus 154 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 230 (785)
+|++++|.+.+ +|..+..+++|++|+++..... ...+..+..+++|+.++++.+.. ..+|..+..+++|++|+++
T Consensus 224 ~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 224 SVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp EEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEET
T ss_pred EEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecC
Confidence 77777777664 4566777777777777653322 22334455666677776665432 2455556666677777777
Q ss_pred CCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcC-----------cccccc-CChhccCCCCCC
Q 003931 231 DNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYR-----------NNFSGP-IPSEIEKLTSLE 298 (785)
Q Consensus 231 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~-~p~~~~~l~~L~ 298 (785)
+|.+++......+..+++|++|+++++-..+.++..+..+++|++|++++ |.+++. ++..+..+++|+
T Consensus 302 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 381 (592)
T 3ogk_B 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELE 381 (592)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCS
T ss_pred CCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCe
Confidence 76655443333356666677776663322222232334556666666662 344332 112233466666
Q ss_pred EEECcCCcccccCCccCcC-CCCCCEEEcc----cccccCCCCCCCCCCCCCCEEEccCCcCccccCccccccCCCcEEE
Q 003931 299 NLDLSGNQLSGTIPPTLWN-LTNLLSLQLF----SNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKFS 373 (785)
Q Consensus 299 ~L~Ls~n~l~~~~p~~l~~-l~~L~~L~L~----~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~ 373 (785)
+|+++.|.+++..+..++. +++|++|+++ .|.+++. |.. ..++..+..+++|+.|+
T Consensus 382 ~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~-p~~------------------~~~~~~~~~~~~L~~L~ 442 (592)
T 3ogk_B 382 YMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL-PLD------------------NGVRSLLIGCKKLRRFA 442 (592)
T ss_dssp EEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC-CCH------------------HHHHHHHHHCTTCCEEE
T ss_pred EEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc-hHH------------------HHHHHHHHhCCCCCEEE
Confidence 6666666666554444443 5666666664 3333321 000 01122233445555555
Q ss_pred ecCc--cccccCCcccccCCCCccEEEcccccceec-CCccccCCCCCcEEEccCCCCccc-CCccccCCCCCcEEEccc
Q 003931 374 VFTN--NFSGSIPGDFGKFSPSLINVSFSNNSFSGE-LPHELCSGFALEELTVNGNNFTGS-LPACLRNCSNLNRVRFDG 449 (785)
Q Consensus 374 l~~n--~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~ 449 (785)
++.| .+++..+..+....++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++.....+++|++|++++
T Consensus 443 L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~ 522 (592)
T 3ogk_B 443 FYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQG 522 (592)
T ss_dssp EECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEES
T ss_pred EecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcC
Confidence 5432 233333333434334666666666666542 233345567788888888876543 333445678888888888
Q ss_pred CccccccCccc-CCCCCCcEEEccCC
Q 003931 450 NQFTGNITKAF-GVHPRLDFIRLSGN 474 (785)
Q Consensus 450 n~l~~~~~~~~-~~~~~L~~L~Ls~n 474 (785)
|+++......+ ..+|.+....+..+
T Consensus 523 n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 523 YRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 88776544333 34666666655544
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2e-26 Score=252.21 Aligned_cols=248 Identities=23% Similarity=0.281 Sum_probs=210.5
Q ss_pred CcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccc
Q 003931 128 LIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAV 207 (785)
Q Consensus 128 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 207 (785)
...++.++..++ .+|..+. ++++.|++++|.+.+..+..|.++++|++|++++|.++...+..|..+++|++|++++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 456666666666 4454443 5777888888888777777788888888888888888777777788888888888888
Q ss_pred cccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecC-cCcccCCccCcCCCCCcEEECcCcccccc
Q 003931 208 NQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNN-SFMGNIPPEIGLLTKLQYLFLYRNNFSGP 286 (785)
Q Consensus 208 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 286 (785)
|++++..+..|..+++|++|++++|.+. .++...+..+++|++|++++| .+....+..|..+++|++|++++|.++.
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 8888776777888899999999999988 666666999999999999995 4554455579999999999999999984
Q ss_pred CChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCcccccc
Q 003931 287 IPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRL 366 (785)
Q Consensus 287 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 366 (785)
+| .+..+++|+.|+|++|++++..|..|.++++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 55 48899999999999999999989999999999999999999999989999999999999999999998888889999
Q ss_pred CCCcEEEecCccccc
Q 003931 367 VKLNKFSVFTNNFSG 381 (785)
Q Consensus 367 ~~L~~l~l~~n~l~~ 381 (785)
++|+.+++++|.+..
T Consensus 279 ~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 279 HHLERIHLHHNPWNC 293 (440)
T ss_dssp TTCCEEECCSSCEEC
T ss_pred cCCCEEEcCCCCccC
Confidence 999999999998764
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.3e-27 Score=245.88 Aligned_cols=232 Identities=22% Similarity=0.289 Sum_probs=137.4
Q ss_pred CCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeee
Q 003931 125 LSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLA 204 (785)
Q Consensus 125 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 204 (785)
.++++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..++++++|++|++++|.++ .+|..++.+++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 467777777777777 55666777777777777777777 66777777777777777777776 5666777777777777
Q ss_pred ccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCcccc
Q 003931 205 LAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFS 284 (785)
Q Consensus 205 l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 284 (785)
+++|++.+.+|..+... .++. .++++++|++|++++|.++ .+|..++.+++|++|++++|.++
T Consensus 157 L~~n~~~~~~p~~~~~~---------------~~~~-~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 157 IRACPELTELPEPLAST---------------DASG-EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEETTCCCCCSCSEEE---------------C-CC-CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred CCCCCCccccChhHhhc---------------cchh-hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 77776666666554430 0000 0233455555555555554 44445555555555555555555
Q ss_pred ccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCcccc
Q 003931 285 GPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENIS 364 (785)
Q Consensus 285 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 364 (785)
+ +|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+.+|..+.
T Consensus 220 ~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~ 298 (328)
T 4fcg_A 220 A-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298 (328)
T ss_dssp C-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGG
T ss_pred c-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHh
Confidence 3 333455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ccCCCcEEEecCc
Q 003931 365 RLVKLNKFSVFTN 377 (785)
Q Consensus 365 ~l~~L~~l~l~~n 377 (785)
.+++++.+.+..+
T Consensus 299 ~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 299 QLPANCIILVPPH 311 (328)
T ss_dssp GSCTTCEEECCGG
T ss_pred hccCceEEeCCHH
Confidence 5555555555444
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3e-28 Score=253.99 Aligned_cols=258 Identities=22% Similarity=0.243 Sum_probs=156.4
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEc
Q 003931 54 SLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRL 133 (785)
Q Consensus 54 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 133 (785)
.++..+++.+.+.......+..+++|++|++++|.++ .++...|.++++|++|++++|.+++..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 3455566666665555555566667777777777776 3444445777777777777777765443 667777777777
Q ss_pred CCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccC
Q 003931 134 ATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGG 213 (785)
Q Consensus 134 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~ 213 (785)
++|++++.. ..++|++|++++|.+.+..+. .+++|++|++++|.+++..+..++.+++|++|++++|.+++.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 777766432 236677777777766654333 245666677777766665555666666666666666666655
Q ss_pred Cchhcc-CCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhcc
Q 003931 214 LPLSLS-NLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIE 292 (785)
Q Consensus 214 ~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 292 (785)
.+..+. .+++|++|++++|.+++. +. ...+++|++|++++|.+.+. |..+..+++|++|++++|.++ .+|..+.
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~--~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 234 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALR 234 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-EC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-cc--ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhh
Confidence 555543 556666666666666532 22 22356666666666666543 333555666666666666665 3455555
Q ss_pred CCCCCCEEECcCCccc-ccCCccCcCCCCCCEEEcc
Q 003931 293 KLTSLENLDLSGNQLS-GTIPPTLWNLTNLLSLQLF 327 (785)
Q Consensus 293 ~l~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~ 327 (785)
.+++|+.|++++|++. +.+|..+..+++|+.+++.
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred cCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 6666666666666665 4455555556666666655
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=9e-28 Score=250.41 Aligned_cols=258 Identities=19% Similarity=0.155 Sum_probs=149.9
Q ss_pred ccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcc
Q 003931 79 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELF 158 (785)
Q Consensus 79 L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~ 158 (785)
++..+++.+.+. ..+..++..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 444555555554 3444455556666666666666665555566666666666666666654433 5666666666666
Q ss_pred cCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcccc
Q 003931 159 NNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEI 238 (785)
Q Consensus 159 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 238 (785)
+|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 66655322 2256666666666665443322 355666666666666555555666666666666666666444
Q ss_pred CccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCC
Q 003931 239 SANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNL 318 (785)
Q Consensus 239 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l 318 (785)
+..++..+++|++|++++|.+++. + ....+++|++|++++|.+++. |..+..+++|+.|++++|+++ .+|..+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 444334556666666666666544 2 223356666666666666643 333566666666666666666 345556666
Q ss_pred CCCCEEEccccccc-CCCCCCCCCCCCCCEEEcc
Q 003931 319 TNLLSLQLFSNNLS-GTIPPEIGSMASLVAFDVN 351 (785)
Q Consensus 319 ~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~l~ 351 (785)
++|+.|++++|++. +..|..+..+++|+.++++
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 66666666666665 4445555556666666655
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=3.7e-28 Score=252.69 Aligned_cols=248 Identities=21% Similarity=0.254 Sum_probs=139.0
Q ss_pred CCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCc-ccCCcccc-------CCCCCcEEEcCCCcccccCCcC
Q 003931 74 LTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQ-GKLSPNVS-------KLSNLIDLRLATNKFSGPIPGD 145 (785)
Q Consensus 74 ~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~-~~~~~~~~-------~l~~L~~L~L~~n~~~~~~~~~ 145 (785)
...++|+.|++++|.+ .+|..++.. |++|++++|.+. ...+..+. ++++|++|++++|++++..|..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 3445566666666666 456554332 666666666663 23333333 5666666666666666666655
Q ss_pred C--CCCCCCCEEEcccCcccccCCccccCC-----CCCCEEEcccCcCcccCCccccCCcccCeeeccccccccC--Cch
Q 003931 146 I--GSMSNLQLVELFNNSFTGQIPSSLGQL-----KNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGG--LPL 216 (785)
Q Consensus 146 l--~~l~~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~--~~~ 216 (785)
+ ..+++|++|++++|.+++. |..++.+ ++|++|++++|.+.+..+..++.+++|++|++++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 4 6666666666666666655 5555554 6666666666666655556666666666666666665443 222
Q ss_pred hc--cCCCCCCEEEccCCCCcc--ccCccccCCCCCCCEEEeecCcCcccCC-ccCcCCCCCcEEECcCccccccCChhc
Q 003931 217 SL--SNLSKLNDLGLSDNFLSG--EISANLIGNWTELESLQIQNNSFMGNIP-PEIGLLTKLQYLFLYRNNFSGPIPSEI 291 (785)
Q Consensus 217 ~l--~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~~ 291 (785)
.+ ..+++|++|++++|.+++ .++...+.++++|++|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 33 555666666666666652 2233334455556666666666555443 23444555555555555555 344444
Q ss_pred cCCCCCCEEECcCCcccccCCccCcCCCCCCEEEccccccc
Q 003931 292 EKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLS 332 (785)
Q Consensus 292 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 332 (785)
. ++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 3 4555555555555543 33 555555555555555554
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4.4e-28 Score=252.17 Aligned_cols=253 Identities=20% Similarity=0.196 Sum_probs=196.8
Q ss_pred ccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCc-ccCChhhh------cCCCCCcEEECCCCCCcccCCc
Q 003931 48 KFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLS-GLIPERLF------TNLGKLEYLNLTENQFQGKLSP 120 (785)
Q Consensus 48 ~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~f------~~l~~L~~L~Ls~n~i~~~~~~ 120 (785)
.+...++|++|++++|.+ ..|..+... |++|++++|.+. ..+|..++ .++++|++|++++|.+++..|.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 445566777777877777 445544432 777888888773 34554431 1678888888888888877777
Q ss_pred cc--cCCCCCcEEEcCCCcccccCCcCCCCC-----CCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCccc--CC
Q 003931 121 NV--SKLSNLIDLRLATNKFSGPIPGDIGSM-----SNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYT--IP 191 (785)
Q Consensus 121 ~~--~~l~~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~ 191 (785)
.+ ..+++|++|++++|++++. |..++.+ ++|++|++++|.+.+..|..++++++|++|++++|.+.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 65 7888888888888888866 6666665 8889999999988887778888889999999999887654 23
Q ss_pred ccc--cCCcccCeeeccccccccC---CchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCcc
Q 003931 192 PEL--GLCTNLSYLALAVNQLSGG---LPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPE 266 (785)
Q Consensus 192 ~~~--~~l~~L~~L~l~~n~i~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 266 (785)
..+ +.+++|++|++++|.+++. ....+..+++|++|++++|.+++..|...+..+++|++|++++|.++ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 333 7888999999999988732 22344678999999999999987665555777899999999999998 67777
Q ss_pred CcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCccccc
Q 003931 267 IGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGT 310 (785)
Q Consensus 267 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~ 310 (785)
+. ++|++|++++|++++. |. +..+++|+.|++++|++++.
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 76 8999999999999876 66 88999999999999998853
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=1.3e-24 Score=244.15 Aligned_cols=264 Identities=25% Similarity=0.252 Sum_probs=141.5
Q ss_pred CCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECC
Q 003931 31 VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT 110 (785)
Q Consensus 31 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls 110 (785)
+++|++++|.++.++...+ ++|++|++++|.++.+.+ .+++|++|++++|.++ .+|. .+++|++|+++
T Consensus 42 l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls 109 (622)
T 3g06_A 42 NAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIF 109 (622)
T ss_dssp CCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEEC
T ss_pred CcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECc
Confidence 4555555555544432211 455555555555543222 2345555555555554 3443 34555555555
Q ss_pred CCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccC
Q 003931 111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTI 190 (785)
Q Consensus 111 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 190 (785)
+|.+++... .+++|+.|++++|++++ +|.. +++|++|++++|.+++ +|. .+++|+.|++++|.+++ +
T Consensus 110 ~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l 176 (622)
T 3g06_A 110 SNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-L 176 (622)
T ss_dssp SCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-C
Confidence 555553222 34455555555555553 2322 2555555555555553 222 23455566666665553 3
Q ss_pred CccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCC
Q 003931 191 PPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLL 270 (785)
Q Consensus 191 ~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 270 (785)
| ..+++|+.|++++|.+++ +|. ..++|+.|++++|.++ .+|.. +++|+.|++++|.+++ +| ..+
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~----~~~L~~L~Ls~N~L~~-lp---~~l 240 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LP---VLP 240 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC----CTTCCEEECCSSCCSC-CC---CCC
T ss_pred c---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC----CCCCCEEEccCCccCc-CC---CCC
Confidence 3 234556666666666553 222 2356666666666665 44432 3566677777766664 34 344
Q ss_pred CCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCC
Q 003931 271 TKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIG 340 (785)
Q Consensus 271 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 340 (785)
++|++|++++|.+++ +|. .+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++..|..+.
T Consensus 241 ~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 241 SELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 667777777776663 443 4566777777777776 5566677777777777777777665554433
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2.7e-24 Score=241.59 Aligned_cols=267 Identities=27% Similarity=0.367 Sum_probs=189.6
Q ss_pred CCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEc
Q 003931 54 SLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRL 133 (785)
Q Consensus 54 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 133 (785)
++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|+|++|.+++. |. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEEC
Confidence 5778888888877 3344443 67888888888877 5665 467788888888887743 33 5678888888
Q ss_pred CCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccC
Q 003931 134 ATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGG 213 (785)
Q Consensus 134 ~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~ 213 (785)
++|.+++. |. .+++|+.|++++|.+++ +|.. +++|++|++++|.+++ +|. ..++|+.|++++|.+++
T Consensus 109 s~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 175 (622)
T 3g06_A 109 FSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS- 175 (622)
T ss_dssp CSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred cCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-
Confidence 88887753 33 56778888888888775 4443 4778888888888774 333 24677888888888875
Q ss_pred CchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccC
Q 003931 214 LPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEK 293 (785)
Q Consensus 214 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~ 293 (785)
+| ..+++|+.|++++|.++ .+|.. .++|+.|++++|.+.. +|. .+++|++|++++|.+++ +| ..
T Consensus 176 l~---~~~~~L~~L~Ls~N~l~-~l~~~----~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~ 239 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQLA-SLPTL----PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VL 239 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CC
T ss_pred Cc---ccCCCCcEEECCCCCCC-CCCCc----cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CC
Confidence 34 45677888888888877 35442 4678888888887773 443 24678888888888875 44 44
Q ss_pred CCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCccccCcccccc
Q 003931 294 LTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGELPENISRL 366 (785)
Q Consensus 294 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 366 (785)
+++|+.|++++|.++ .+|. .+++|++|++++|+++ .+|..+..+++|+.|++++|.+.+..|..+..+
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 577888888888887 3454 5677888888888887 667778888888888888888887777665543
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5e-26 Score=250.97 Aligned_cols=235 Identities=23% Similarity=0.263 Sum_probs=148.6
Q ss_pred CCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEE
Q 003931 77 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVE 156 (785)
Q Consensus 77 ~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 156 (785)
++|++|++++|.+++ ++...|..+++|++|+|++|.+++..+ +..+++|++|++++|.+++..+ .++|++|+
T Consensus 34 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 355555555555553 333334555555555555555554333 5555666666666665553321 25666666
Q ss_pred cccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhcc-CCCCCCEEEccCCCCc
Q 003931 157 LFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLS-NLSKLNDLGLSDNFLS 235 (785)
Q Consensus 157 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~-~l~~L~~L~L~~n~l~ 235 (785)
+++|.+.+..+. .+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+. .+++|++|++++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 666666654333 345677777777777766666667777777777777777766666664 5677777777777776
Q ss_pred cccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCccc-ccCCcc
Q 003931 236 GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLS-GTIPPT 314 (785)
Q Consensus 236 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~p~~ 314 (785)
+. +. ...+++|++|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..
T Consensus 183 ~~-~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 183 DV-KG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp EE-EC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred cc-cc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 43 22 3356777777777777775433 46777777777777777774 5666777777777777777776 555666
Q ss_pred CcCCCCCCEEEcc
Q 003931 315 LWNLTNLLSLQLF 327 (785)
Q Consensus 315 l~~l~~L~~L~L~ 327 (785)
+..++.|+.+++.
T Consensus 258 ~~~l~~L~~l~~~ 270 (487)
T 3oja_A 258 FSKNQRVQTVAKQ 270 (487)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HHhCCCCcEEecc
Confidence 6667777666665
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.5e-28 Score=281.01 Aligned_cols=443 Identities=15% Similarity=0.106 Sum_probs=242.8
Q ss_pred cEEEccCCCCCCCccccccCCCCCCEEeCCCCCC-CCCC--c------------cccCCCCCCcEEEccCCCCcccCCcc
Q 003931 8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFL-ETPD--W------------SKFSSMPSLTHLGLYLNELTLEFPSF 72 (785)
Q Consensus 8 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i-~~~~--~------------~~f~~l~~L~~L~L~~n~i~~~~~~~ 72 (785)
+.+++.++... .....+.++++|++|+++++.. .... + ..+..+++|++|++++|.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 34556554322 2334467788888888888742 1111 0 11235678888888888777665555
Q ss_pred CC-CCCCccEEECCCC-CCcccCChhhhcCCCCCcEEECCCCCCcccCCccc----cCCCCCcEEEcCCCc--cccc-CC
Q 003931 73 IL-TCRNLTYLDLSLN-KLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV----SKLSNLIDLRLATNK--FSGP-IP 143 (785)
Q Consensus 73 ~~-~l~~L~~L~Ls~n-~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~----~~l~~L~~L~L~~n~--~~~~-~~ 143 (785)
+. .+++|++|++++| .++......++.++++|++|++++|.+++..+..+ ..+++|+.|++++|. +... ++
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 54 5778888888887 44432223344578888888888887665443333 356688888888775 2111 11
Q ss_pred cCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCc-------CcccCCccccCCcccCee-eccccccccCCc
Q 003931 144 GDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA-------LNYTIPPELGLCTNLSYL-ALAVNQLSGGLP 215 (785)
Q Consensus 144 ~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L-~l~~n~i~~~~~ 215 (785)
..+..+++|++|++++|...+.++..+..+++|++|+++.+. +.+ ++..+.++++|+.+ .+..... +.++
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~ 282 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLP 282 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGG
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHH
Confidence 112346788888888773322356667777788888755443 222 23355667777777 3332221 2344
Q ss_pred hhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCccc-CCccCcCCCCCcEEECcC---------ccccc
Q 003931 216 LSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGN-IPPEIGLLTKLQYLFLYR---------NNFSG 285 (785)
Q Consensus 216 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~---------n~l~~ 285 (785)
..+..+++|++|++++|.+++......+..+++|++|++++| +... ++.....+++|++|++.+ +.+++
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~ 361 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTE 361 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCH
T ss_pred HHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCH
Confidence 444456777777777777654443444566777777777776 3221 121223466777777632 33433
Q ss_pred cCChhcc-CCCCCCEEECcCCcccccCCccCc-CCCCCCEEEcc--c----ccccCCCCCCCCCCCCCCEEEccCCcCcc
Q 003931 286 PIPSEIE-KLTSLENLDLSGNQLSGTIPPTLW-NLTNLLSLQLF--S----NNLSGTIPPEIGSMASLVAFDVNTNQLHG 357 (785)
Q Consensus 286 ~~p~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L~L~--~----n~l~~~~p~~~~~l~~L~~L~l~~n~l~~ 357 (785)
.....+. .+++|+.|+++.|.+++..+..+. .+++|++|+++ + +.++. .|.. .
T Consensus 362 ~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~------------------~ 422 (594)
T 2p1m_B 362 QGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL-EPLD------------------I 422 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC-CCTH------------------H
T ss_pred HHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC-Cchh------------------h
Confidence 2222222 366777776666666654444443 46667777776 2 22321 1100 0
Q ss_pred ccCccccccCCCcEEEecCccccccCCcccccCCCCccEEEcccccceecCCccc-cCCCCCcEEEccCCCCcccCCc-c
Q 003931 358 ELPENISRLVKLNKFSVFTNNFSGSIPGDFGKFSPSLINVSFSNNSFSGELPHEL-CSGFALEELTVNGNNFTGSLPA-C 435 (785)
Q Consensus 358 ~~~~~~~~l~~L~~l~l~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~-~ 435 (785)
.++..+..+++|+.|++++ .+++..+..+....++|+.|++++|.+++.....+ ..+++|++|++++|.+++.... .
T Consensus 423 ~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~ 501 (594)
T 2p1m_B 423 GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLAN 501 (594)
T ss_dssp HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHT
T ss_pred HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHH
Confidence 1111123344444444433 33333333333322356666666665544333333 3456677777777776543322 3
Q ss_pred ccCCCCCcEEEcccCccccccCccc-CCCCCCcEEEccCC
Q 003931 436 LRNCSNLNRVRFDGNQFTGNITKAF-GVHPRLDFIRLSGN 474 (785)
Q Consensus 436 ~~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~Ls~n 474 (785)
...+++|++|++++|+++......+ ..+|+++...+..+
T Consensus 502 ~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 502 ASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp GGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred HHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence 3456778888888887754433333 34567766655544
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=8.3e-26 Score=249.20 Aligned_cols=236 Identities=20% Similarity=0.166 Sum_probs=161.9
Q ss_pred CCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEE
Q 003931 101 LGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180 (785)
Q Consensus 101 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 180 (785)
+++|++|+|++|.+++..+..|..+++|++|+|++|.+++..| +..+++|++|++++|.+++..+ .++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence 3478999999999988878888889999999999998886655 8888888888888888875432 37888888
Q ss_pred cccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCc
Q 003931 181 LRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFM 260 (785)
Q Consensus 181 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 260 (785)
+++|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+...+++|++|++++|.++
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 888888765443 34677788888888777777777777777777777777776555553346677777777777776
Q ss_pred ccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEccccccc-CCCCCCC
Q 003931 261 GNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLS-GTIPPEI 339 (785)
Q Consensus 261 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~~ 339 (785)
+.. ....+++|++|+|++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+. +.+|..+
T Consensus 183 ~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 183 DVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp EEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred ccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHH
Confidence 542 23346667777777776665333 36666666666666666663 4555666666666666666655 3333334
Q ss_pred CCCCCCCEEEc
Q 003931 340 GSMASLVAFDV 350 (785)
Q Consensus 340 ~~l~~L~~L~l 350 (785)
..++.|+.+++
T Consensus 259 ~~l~~L~~l~~ 269 (487)
T 3oja_A 259 SKNQRVQTVAK 269 (487)
T ss_dssp TTCHHHHHHHH
T ss_pred HhCCCCcEEec
Confidence 44444443333
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.2e-27 Score=273.38 Aligned_cols=174 Identities=16% Similarity=0.136 Sum_probs=80.9
Q ss_pred cEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccc---cCCcc------------ccCCCCCCEEEcccCcCcccCCcc
Q 003931 129 IDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG---QIPSS------------LGQLKNLQHLDLRMNALNYTIPPE 193 (785)
Q Consensus 129 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~---~~~~~------------l~~l~~L~~L~l~~n~l~~~~~~~ 193 (785)
+.++++.+... .....+..+++|+.|+++++.... ..|.. ...+++|++|++++|.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 34555443322 112234566778888888775321 11111 224556666666666655444444
Q ss_pred cc-CCcccCeeecccc-ccccC-CchhccCCCCCCEEEccCCCCccccCc---cccCCCCCCCEEEeecCc--Cccc-CC
Q 003931 194 LG-LCTNLSYLALAVN-QLSGG-LPLSLSNLSKLNDLGLSDNFLSGEISA---NLIGNWTELESLQIQNNS--FMGN-IP 264 (785)
Q Consensus 194 ~~-~l~~L~~L~l~~n-~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~L~~n~--l~~~-~~ 264 (785)
+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+. .+...+++|++|++++|. +... ++
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~ 204 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence 43 4556666666665 33321 223333556666666666654432211 112244555555555554 1100 01
Q ss_pred ccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECc
Q 003931 265 PEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLS 303 (785)
Q Consensus 265 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 303 (785)
..+..+++|++|++++|...+.+|..+..+++|+.|+++
T Consensus 205 ~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp HHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred HHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 111234555555555552211244445555555555543
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=8.9e-24 Score=215.78 Aligned_cols=205 Identities=23% Similarity=0.257 Sum_probs=105.2
Q ss_pred CCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEEC
Q 003931 30 KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNL 109 (785)
Q Consensus 30 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~L 109 (785)
+|++|++++|.++.+.+.+|.++++|++|++++|.+++..+..|..+++|++|++++|.++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------- 89 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ------------------- 89 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-------------------
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-------------------
Confidence 4555555555555554445555555555555555555444444555555555555555544
Q ss_pred CCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccccc-CCccccCCCCCCEEEcccCcCcc
Q 003931 110 TENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ-IPSSLGQLKNLQHLDLRMNALNY 188 (785)
Q Consensus 110 s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~ 188 (785)
+..+..|.++++|++|++++|.+.+..+..++.+++|++|++++|.+.+. +|..++.+++|++|++++|.+++
T Consensus 90 ------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 90 ------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp ------EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred ------ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 44444444444444444444444443333444555555555555554432 34455555555555555555554
Q ss_pred cCCccccCCcccC----eeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcc
Q 003931 189 TIPPELGLCTNLS----YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 261 (785)
Q Consensus 189 ~~~~~~~~l~~L~----~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 261 (785)
..+..+..+++|+ .|++++|.+++..+..+. ..+|++|++++|.++ .+|...++.+++|++|++++|.+.+
T Consensus 164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCcee-ecCHhHhcccccccEEEccCCcccc
Confidence 4444444444444 555555555543333332 235666666666665 4444445666666666666666553
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.1e-23 Score=214.99 Aligned_cols=204 Identities=24% Similarity=0.203 Sum_probs=98.6
Q ss_pred CCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcc
Q 003931 103 KLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLR 182 (785)
Q Consensus 103 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 182 (785)
+|++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444455555555555555555554444455555555555555555555544555555555555555
Q ss_pred cCcCcccCCccccCCcccCeeeccccccccC-CchhccCCCCCCEEEccCCCCccccCccccCCCCCCC----EEEeecC
Q 003931 183 MNALNYTIPPELGLCTNLSYLALAVNQLSGG-LPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELE----SLQIQNN 257 (785)
Q Consensus 183 ~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~----~L~L~~n 257 (785)
+|.+.+..+..++.+++|++|++++|.+++. +|..+..+++|++|++++|.+++ ++...+..+++|+ +|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE-ECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc-CCHHHhhhhhhccccceeeecCCC
Confidence 5555544444455555555555555555432 34455555555555555555542 2222233333333 4444444
Q ss_pred cCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCccc
Q 003931 258 SFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLS 308 (785)
Q Consensus 258 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 308 (785)
.+.+..+..+. ..+|++|++++|.+++..+..|..+++|+.|++++|++.
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 44433222222 224444444444444333333344444444444444443
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=5.2e-23 Score=209.08 Aligned_cols=204 Identities=25% Similarity=0.251 Sum_probs=131.0
Q ss_pred CCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEEC
Q 003931 30 KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNL 109 (785)
Q Consensus 30 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~L 109 (785)
+.++++++++.++.++.. +. +++++|++++|.++...+..|.++++|++|++++|.++ .+|..+|.++++|++|++
T Consensus 17 ~~~~l~~~~~~l~~ip~~-~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-IP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-CC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCCccCCC-CC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence 455666666666554422 21 45666666666666555556666666666666666665 455555566666666666
Q ss_pred CCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCccc
Q 003931 110 TENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYT 189 (785)
Q Consensus 110 s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 189 (785)
++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 66666655555566666666666666666665555666666777777777766655555566667777777777777665
Q ss_pred CCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccc
Q 003931 190 IPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGE 237 (785)
Q Consensus 190 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 237 (785)
.+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 555666677777777777777665555667777777777777776543
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=6e-23 Score=208.59 Aligned_cols=203 Identities=23% Similarity=0.249 Sum_probs=132.9
Q ss_pred CCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECC
Q 003931 6 ELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLS 85 (785)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 85 (785)
..+.++++++.++.++ ..+. +++++|++++|.++.+.+.+|.++++|++|++++|.++.+.+..|..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip-~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIP-SNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCC-SCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccC-CCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 3566667766666433 2222 456677777777766666666677777777777776666666666666777777777
Q ss_pred CCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccccc
Q 003931 86 LNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ 165 (785)
Q Consensus 86 ~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~ 165 (785)
+|.++ .+|...|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus 94 ~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 94 DNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp SSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 77666 45555566667777777777776666666666677777777777776655555566667777777777766665
Q ss_pred CCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecccccccc
Q 003931 166 IPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSG 212 (785)
Q Consensus 166 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~ 212 (785)
.+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 55566666777777777776665555556666677777777766543
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.5e-23 Score=213.12 Aligned_cols=205 Identities=26% Similarity=0.263 Sum_probs=120.2
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCC
Q 003931 25 LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL 104 (785)
Q Consensus 25 ~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L 104 (785)
+..+++|+.|++++|.++.+. ++..+++|++|++++|.+++. ..+..+++|++|++++|.++ .++...|.++++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTC
T ss_pred cccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCC
Confidence 345556666666666555433 355566666666666665542 34555666666666666665 3444444566666
Q ss_pred cEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccC
Q 003931 105 EYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 184 (785)
Q Consensus 105 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 184 (785)
++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 66666666666555555566666666666666666555555566666666666666666555555566666666666666
Q ss_pred cCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCcc
Q 003931 185 ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISAN 241 (785)
Q Consensus 185 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 241 (785)
.+++..+..+..+++|++|++++|.+.+. +++|+.++++.|.++|.+|..
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 66655555556666666666666655432 345556666666666666554
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5e-24 Score=216.75 Aligned_cols=227 Identities=25% Similarity=0.237 Sum_probs=153.5
Q ss_pred CCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECC
Q 003931 31 VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT 110 (785)
Q Consensus 31 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls 110 (785)
+..+++..+.+... ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+++ ++ .+..+++|++|+++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECC
Confidence 33445555544433 2345566777777777776543 246667777777777777763 33 34677777777777
Q ss_pred CCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccC
Q 003931 111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTI 190 (785)
Q Consensus 111 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 190 (785)
+|.+++..+..|..+++|++|++++|++++..+..++.+++|++|++++|.+++..+..++.+++|++|++++|.+++..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 77777666666777777777777777777666666777777777777777777666666677777777777777777666
Q ss_pred CccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCC
Q 003931 191 PPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLL 270 (785)
Q Consensus 191 ~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 270 (785)
+..++.+++|++|++++|.+++..+..+..+++|+.|++++|.+.+ .+++|+.+++..|.+.|.+|.+++.+
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~--------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC--------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC--------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc--------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 6666777777777777777776666667777777777777776653 24456777777777777777766655
Q ss_pred CC
Q 003931 271 TK 272 (785)
Q Consensus 271 ~~ 272 (785)
+.
T Consensus 246 ~~ 247 (272)
T 3rfs_A 246 AP 247 (272)
T ss_dssp CG
T ss_pred CC
Confidence 43
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2e-22 Score=206.34 Aligned_cols=203 Identities=23% Similarity=0.140 Sum_probs=128.3
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCC
Q 003931 25 LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL 104 (785)
Q Consensus 25 ~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L 104 (785)
+.++++++.++++++.++.++...+ +++++|++++|.+++..+..|..+++|++|++++|.+++ ++.. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcC
Confidence 4555666666666666665543322 456666666666666555666666666666666666653 3321 456666
Q ss_pred cEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccC
Q 003931 105 EYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMN 184 (785)
Q Consensus 105 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 184 (785)
++|++++|.++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 66666666666 44555666666666666666666555566666666777777777666655555666667777777777
Q ss_pred cCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCc
Q 003931 185 ALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLS 235 (785)
Q Consensus 185 ~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 235 (785)
+++...+..+..+++|++|++++|+++ .+|..+....+|+.+++++|.+.
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 766555555566677777777777776 45556666667777777777765
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=4.3e-22 Score=203.91 Aligned_cols=202 Identities=25% Similarity=0.199 Sum_probs=98.2
Q ss_pred cCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCC
Q 003931 49 FSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNL 128 (785)
Q Consensus 49 f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 128 (785)
+.+++++++++++++.++.+.+ .+. ++++.|++++|.+++ ++...|.++++|++|++++|.+++..+. ..+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~-~~~--~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPP-DLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCS-CCC--TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCCcCCC-CCC--CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 3444455555555555543322 221 345555555555542 2323335555555555555555433221 445555
Q ss_pred cEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecccc
Q 003931 129 IDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVN 208 (785)
Q Consensus 129 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 208 (785)
++|++++|+++ .+|..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 55555555554 33444455555555555555555444444555555555555555555444444445555555555555
Q ss_pred ccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcC
Q 003931 209 QLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSF 259 (785)
Q Consensus 209 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 259 (785)
++++..+..|..+++|++|++++|.++ .+|.. +...++|+.+++++|.+
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~-~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKG-FFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT-TTTTCCCSEEECCSCCB
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChh-hcccccCCeEEeCCCCc
Confidence 555444444445555555555555554 44444 33334555555555544
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.8e-23 Score=222.16 Aligned_cols=252 Identities=22% Similarity=0.245 Sum_probs=119.0
Q ss_pred EEccCCCCcccCCccCCCCCCccEEECCCCCCcccCCh----hhhcCCC-CCcEEECCCCCCcccCCccccCC-----CC
Q 003931 58 LGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPE----RLFTNLG-KLEYLNLTENQFQGKLSPNVSKL-----SN 127 (785)
Q Consensus 58 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~f~~l~-~L~~L~Ls~n~i~~~~~~~~~~l-----~~ 127 (785)
+.+++|.+++.+|..+...++|++|++++|.++ ..+. ..|.+++ +|++|+|++|.+++..+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY-SISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCC-hHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 344555555554444444444555555555554 2332 3334555 55555555555554444444433 55
Q ss_pred CcEEEcCCCcccccCCcC----CCCC-CCCCEEEcccCcccccCCccc----cC-CCCCCEEEcccCcCcccCC----cc
Q 003931 128 LIDLRLATNKFSGPIPGD----IGSM-SNLQLVELFNNSFTGQIPSSL----GQ-LKNLQHLDLRMNALNYTIP----PE 193 (785)
Q Consensus 128 L~~L~L~~n~~~~~~~~~----l~~l-~~L~~L~L~~n~~~~~~~~~l----~~-l~~L~~L~l~~n~l~~~~~----~~ 193 (785)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.++...+ ..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 555555555555433332 2222 455555555555554433322 22 2355666666655553222 22
Q ss_pred ccCCc-ccCeeeccccccccCCchhc----cCC-CCCCEEEccCCCCccc----cCccccCCCCCCCEEEeecCcCcccC
Q 003931 194 LGLCT-NLSYLALAVNQLSGGLPLSL----SNL-SKLNDLGLSDNFLSGE----ISANLIGNWTELESLQIQNNSFMGNI 263 (785)
Q Consensus 194 ~~~l~-~L~~L~l~~n~i~~~~~~~l----~~l-~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~ 263 (785)
+...+ +|++|++++|.+++..+..+ ..+ ++|++|++++|.+.+. ++..+....++|++|++++|.+.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 23333 55555555555554444322 223 3566666666655531 22221111335555555555555432
Q ss_pred C----ccCcCCCCCcEEECcCccccccC-------ChhccCCCCCCEEECcCCccccc
Q 003931 264 P----PEIGLLTKLQYLFLYRNNFSGPI-------PSEIEKLTSLENLDLSGNQLSGT 310 (785)
Q Consensus 264 ~----~~~~~l~~L~~L~L~~n~l~~~~-------p~~~~~l~~L~~L~Ls~n~l~~~ 310 (785)
+ ..+..+++|++|++++|.+.+.. +..+..+++|+.||+++|++.+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 2 22344555666666655533221 12334455555555555555443
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=2.9e-22 Score=199.65 Aligned_cols=198 Identities=17% Similarity=0.212 Sum_probs=168.8
Q ss_pred CCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCC-CcccCCccCCCCCCccEEECCC-CCCcccCChhhhcCCCCCcE
Q 003931 29 RKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE-LTLEFPSFILTCRNLTYLDLSL-NKLSGLIPERLFTNLGKLEY 106 (785)
Q Consensus 29 ~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~f~~l~~L~~ 106 (785)
++|++|++++|.++.+.+.+|.++++|++|++++|. ++.+.+..|.++++|++|++++ |.++ .++...|.++++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence 389999999999999988899999999999999997 8888888899999999999998 8888 577777789999999
Q ss_pred EECCCCCCcccCCccccCCCCCc---EEEcCCC-cccccCCcCCCCCCCCC-EEEcccCcccccCCccccCCCCCCEEEc
Q 003931 107 LNLTENQFQGKLSPNVSKLSNLI---DLRLATN-KFSGPIPGDIGSMSNLQ-LVELFNNSFTGQIPSSLGQLKNLQHLDL 181 (785)
Q Consensus 107 L~Ls~n~i~~~~~~~~~~l~~L~---~L~L~~n-~~~~~~~~~l~~l~~L~-~L~L~~n~~~~~~~~~l~~l~~L~~L~l 181 (785)
|++++|.+++ +|. |..+++|+ +|++++| .+++..+..|.++++|+ +|++++|.++...+..+.. ++|++|++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 9999999986 444 88888888 9999999 89877777899999999 9999999998554445555 89999999
Q ss_pred ccCc-CcccCCccccCC-cccCeeeccccccccCCchhccCCCCCCEEEccCCC
Q 003931 182 RMNA-LNYTIPPELGLC-TNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNF 233 (785)
Q Consensus 182 ~~n~-l~~~~~~~~~~l-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~ 233 (785)
++|. ++...+..|..+ ++|+.|++++|.+++..+. .+++|+.|+++++.
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 9995 887777888888 9999999999999854433 67889999988763
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=6.6e-24 Score=228.06 Aligned_cols=187 Identities=21% Similarity=0.254 Sum_probs=88.1
Q ss_pred CCCCCCCEEEcccCcccc----cCCccccCCCCCCEEEcccCcCcccCCcccc----CC---------cccCeeeccccc
Q 003931 147 GSMSNLQLVELFNNSFTG----QIPSSLGQLKNLQHLDLRMNALNYTIPPELG----LC---------TNLSYLALAVNQ 209 (785)
Q Consensus 147 ~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~----~l---------~~L~~L~l~~n~ 209 (785)
..+++|++|++++|.+.. .+|..+..+++|++|++++|.++...+..+. .+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 344555555555555543 2344445555555555555555432222222 12 455555555555
Q ss_pred cc-cCCc---hhccCCCCCCEEEccCCCCccc----cCccccCCCCCCCEEEeecCcCc----ccCCccCcCCCCCcEEE
Q 003931 210 LS-GGLP---LSLSNLSKLNDLGLSDNFLSGE----ISANLIGNWTELESLQIQNNSFM----GNIPPEIGLLTKLQYLF 277 (785)
Q Consensus 210 i~-~~~~---~~l~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L~ 277 (785)
++ +.++ ..+..+++|++|++++|.+... +.+..+..+++|++|++++|.++ +.+|..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 54 2222 2344455555555555555411 11112444555555555555553 33444455555555555
Q ss_pred CcCcccccc----CChhcc--CCCCCCEEECcCCcccc----cCCccC-cCCCCCCEEEcccccccC
Q 003931 278 LYRNNFSGP----IPSEIE--KLTSLENLDLSGNQLSG----TIPPTL-WNLTNLLSLQLFSNNLSG 333 (785)
Q Consensus 278 L~~n~l~~~----~p~~~~--~l~~L~~L~Ls~n~l~~----~~p~~l-~~l~~L~~L~L~~n~l~~ 333 (785)
|++|.+++. ++.++. .+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++++
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~ 317 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence 555555433 233332 25555555555555554 244443 334555555555555543
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=2.3e-22 Score=208.76 Aligned_cols=83 Identities=25% Similarity=0.304 Sum_probs=38.3
Q ss_pred CCCCCCEEEeecCcCcccCCccCcCC---CCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCC
Q 003931 245 NWTELESLQIQNNSFMGNIPPEIGLL---TKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNL 321 (785)
Q Consensus 245 ~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L 321 (785)
++++|++|++++|.+.+..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 34444444444444444444333333 35555555555554 3343332 4555555555555532 21 3444555
Q ss_pred CEEEccccccc
Q 003931 322 LSLQLFSNNLS 332 (785)
Q Consensus 322 ~~L~L~~n~l~ 332 (785)
++|++++|+++
T Consensus 297 ~~L~L~~N~l~ 307 (310)
T 4glp_A 297 DNLTLDGNPFL 307 (310)
T ss_dssp SCEECSSTTTS
T ss_pred cEEECcCCCCC
Confidence 55555555443
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4.3e-23 Score=217.53 Aligned_cols=252 Identities=21% Similarity=0.242 Sum_probs=144.5
Q ss_pred ccEEECCCCCCcccCChhhhcCC--CCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCccccc-CCcCCCCCCCCCEE
Q 003931 79 LTYLDLSLNKLSGLIPERLFTNL--GKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGP-IPGDIGSMSNLQLV 155 (785)
Q Consensus 79 L~~L~Ls~n~i~~~~~~~~f~~l--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L 155 (785)
++.++++++.+. ...+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 49 ~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 566666666554 2233444 6677777777766654443 44566677777777666543 55556666677777
Q ss_pred EcccCcccccCCccccCCCCCCEEEcccC-cCccc-CCccccCCcccCeeecccc-ccccC-CchhccCCC-CCCEEEcc
Q 003931 156 ELFNNSFTGQIPSSLGQLKNLQHLDLRMN-ALNYT-IPPELGLCTNLSYLALAVN-QLSGG-LPLSLSNLS-KLNDLGLS 230 (785)
Q Consensus 156 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~i~~~-~~~~l~~l~-~L~~L~L~ 230 (785)
++++|.+.+..+..++++++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 77777666555666666677777777766 45432 4444556666666666666 66543 345556666 66666666
Q ss_pred CC--CCc-cccCccccCCCCCCCEEEeecCc-CcccCCccCcCCCCCcEEECcCcc-ccccCChhccCCCCCCEEECcCC
Q 003931 231 DN--FLS-GEISANLIGNWTELESLQIQNNS-FMGNIPPEIGLLTKLQYLFLYRNN-FSGPIPSEIEKLTSLENLDLSGN 305 (785)
Q Consensus 231 ~n--~l~-~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~n 305 (785)
+| .++ +.++. .+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcccCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 66 333 22333 24556666666666666 454555566666666666666663 22111124556666666666666
Q ss_pred cccccCCccCcCC-CCCCEEEcccccccCCCCCCCC
Q 003931 306 QLSGTIPPTLWNL-TNLLSLQLFSNNLSGTIPPEIG 340 (785)
Q Consensus 306 ~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~ 340 (785)
++.. .+..+ .++..|++++|++++..|..++
T Consensus 283 -i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 283 -VPDG---TLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp -SCTT---CHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred -cCHH---HHHHHHhhCcceEEecccCccccCCccc
Confidence 3221 22222 1244455666666665555443
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=2.7e-23 Score=220.87 Aligned_cols=259 Identities=17% Similarity=0.178 Sum_probs=150.1
Q ss_pred EEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCC----ccccCCC-CCcEEEcCCCcccccCCcCCCCC-----C
Q 003931 81 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS----PNVSKLS-NLIDLRLATNKFSGPIPGDIGSM-----S 150 (785)
Q Consensus 81 ~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~----~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l-----~ 150 (785)
++++++|.+++.+|.. +...++|++|+|++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEF-TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHHH-HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 4677788877665553 3555558888888888776665 5666776 77777777777776555555443 6
Q ss_pred CCCEEEcccCcccccCCccc----cCC-CCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccC-CCCC
Q 003931 151 NLQLVELFNNSFTGQIPSSL----GQL-KNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSN-LSKL 224 (785)
Q Consensus 151 ~L~~L~L~~n~~~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~-l~~L 224 (785)
+|++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+..+.. .+.. .++|
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~--------------------~l~~~~~~L 140 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ--------------------AFSNLPASI 140 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH--------------------HHTTSCTTC
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH--------------------HHHhCCCce
Confidence 66666666666665444432 223 55666666666655433322211 1112 1345
Q ss_pred CEEEccCCCCccccCcc---ccCCCC-CCCEEEeecCcCcccCCcc----CcCC-CCCcEEECcCcccccc----CChhc
Q 003931 225 NDLGLSDNFLSGEISAN---LIGNWT-ELESLQIQNNSFMGNIPPE----IGLL-TKLQYLFLYRNNFSGP----IPSEI 291 (785)
Q Consensus 225 ~~L~L~~n~l~~~~~~~---~~~~l~-~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~----~p~~~ 291 (785)
++|++++|.+.+..... .+..++ +|++|++++|.+.+..+.. +..+ ++|++|+|++|.+++. ++..+
T Consensus 141 ~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l 220 (362)
T 3goz_A 141 TSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIF 220 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred eEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHH
Confidence 55555555444211111 122232 5666666666655444432 2333 4677777777777642 33444
Q ss_pred cC-CCCCCEEECcCCcccccCC----ccCcCCCCCCEEEcccccccCCC-------CCCCCCCCCCCEEEccCCcCcccc
Q 003931 292 EK-LTSLENLDLSGNQLSGTIP----PTLWNLTNLLSLQLFSNNLSGTI-------PPEIGSMASLVAFDVNTNQLHGEL 359 (785)
Q Consensus 292 ~~-l~~L~~L~Ls~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~-------p~~~~~l~~L~~L~l~~n~l~~~~ 359 (785)
.. .++|++|+|++|.+++..+ ..+..+++|++|++++|.+.+.. +..+..+++|+.+|+++|.+....
T Consensus 221 ~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 221 SSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp HHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred hcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 44 3578888888888775433 33466778888888888754332 234566777777777777776554
Q ss_pred C
Q 003931 360 P 360 (785)
Q Consensus 360 ~ 360 (785)
+
T Consensus 301 ~ 301 (362)
T 3goz_A 301 S 301 (362)
T ss_dssp C
T ss_pred h
Confidence 3
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=4e-21 Score=191.38 Aligned_cols=196 Identities=15% Similarity=0.168 Sum_probs=101.2
Q ss_pred CCCEEEcccCcccccCCccccCCCCCCEEEcccCc-CcccCCccccCCcccCeeeccc-cccccCCchhccCCCCCCEEE
Q 003931 151 NLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA-LNYTIPPELGLCTNLSYLALAV-NQLSGGLPLSLSNLSKLNDLG 228 (785)
Q Consensus 151 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~ 228 (785)
+|++|++++|.+++..+..|.++++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444444444444444444455555555543 4433333444455555555554 445444444455555555555
Q ss_pred ccCCCCccccCccccCCCCCCC---EEEeecC-cCcccCCccCcCCCCCc-EEECcCccccccCChhccCCCCCCEEECc
Q 003931 229 LSDNFLSGEISANLIGNWTELE---SLQIQNN-SFMGNIPPEIGLLTKLQ-YLFLYRNNFSGPIPSEIEKLTSLENLDLS 303 (785)
Q Consensus 229 L~~n~l~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 303 (785)
+++|.+++ +|. ++.+++|+ +|++++| .+.+..+..|..+++|+ +|++++|.++...+..|.. ++|+.|+++
T Consensus 112 l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 55555542 443 44555555 6666666 55555445556666666 6666666665333333333 566666666
Q ss_pred CCc-ccccCCccCcCC-CCCCEEEcccccccCCCCCCCCCCCCCCEEEccCC
Q 003931 304 GNQ-LSGTIPPTLWNL-TNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTN 353 (785)
Q Consensus 304 ~n~-l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 353 (785)
+|+ +++..+..|..+ ++|++|++++|++++ +|.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 663 655445555666 666666666666653 2322 4455555555443
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=8.7e-21 Score=190.34 Aligned_cols=180 Identities=25% Similarity=0.307 Sum_probs=136.4
Q ss_pred CCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECC
Q 003931 6 ELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLS 85 (785)
Q Consensus 6 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls 85 (785)
..++++++++.++.++. .+. ++++.|++++|.++.+.+.+|.++++|++|++++|.+++..+..|..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45778888888775443 233 578888888888888877778888888888888888887777778888888888888
Q ss_pred CCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccccc
Q 003931 86 LNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ 165 (785)
Q Consensus 86 ~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~ 165 (785)
+|.++ .+|...|..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++.
T Consensus 92 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 92 NNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 88887 56666667788888888888888776666677777888888888877766666677777777777777777766
Q ss_pred CCccccCCCCCCEEEcccCcCccc
Q 003931 166 IPSSLGQLKNLQHLDLRMNALNYT 189 (785)
Q Consensus 166 ~~~~l~~l~~L~~L~l~~n~l~~~ 189 (785)
.+..+..+++|++|++++|.+.+.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 666777777777777777777643
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=4.1e-23 Score=217.67 Aligned_cols=224 Identities=21% Similarity=0.203 Sum_probs=129.2
Q ss_pred CCCcEEECCCCCCcccCCccccCC--CCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccccc-CCccccCCCCCCE
Q 003931 102 GKLEYLNLTENQFQGKLSPNVSKL--SNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ-IPSSLGQLKNLQH 178 (785)
Q Consensus 102 ~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~ 178 (785)
..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34677788777665 3445555 6777777777777765543 44677777777777776644 5556667777777
Q ss_pred EEcccCcCcccCCccccCCcccCeeecccc-cccc-CCchhccCCCCCCEEEccCC-CCccccCccccCCCC-CCCEEEe
Q 003931 179 LDLRMNALNYTIPPELGLCTNLSYLALAVN-QLSG-GLPLSLSNLSKLNDLGLSDN-FLSGEISANLIGNWT-ELESLQI 254 (785)
Q Consensus 179 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~i~~-~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~-~L~~L~L 254 (785)
|++++|.+++..+..++.+++|++|++++| .+++ .++..+.++++|++|++++| .+++......+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 777777766666666666666777777666 4554 24444556666666666666 555331122245555 6666666
Q ss_pred ecC--cCc-ccCCccCcCCCCCcEEECcCcc-ccccCChhccCCCCCCEEECcCCc-ccccCCccCcCCCCCCEEEcccc
Q 003931 255 QNN--SFM-GNIPPEIGLLTKLQYLFLYRNN-FSGPIPSEIEKLTSLENLDLSGNQ-LSGTIPPTLWNLTNLLSLQLFSN 329 (785)
Q Consensus 255 ~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n 329 (785)
++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......++.+++|++|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 665 233 2334444455555555555555 444444455555555555555553 21111113444555555555554
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=8.2e-24 Score=227.31 Aligned_cols=239 Identities=20% Similarity=0.248 Sum_probs=151.8
Q ss_pred cccCCCCCcEEEcCCCccccc----CCcCCCCCCCCCEEEcccCc---ccccCCcc-------ccCCCCCCEEEcccCcC
Q 003931 121 NVSKLSNLIDLRLATNKFSGP----IPGDIGSMSNLQLVELFNNS---FTGQIPSS-------LGQLKNLQHLDLRMNAL 186 (785)
Q Consensus 121 ~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~n~---~~~~~~~~-------l~~l~~L~~L~l~~n~l 186 (785)
.+..+++|++|++++|.+... ++..+..+++|++|++++|. +.+.+|.. +..+++|++|++++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 344444555555555544433 12234556666666666642 33334443 36788899999999988
Q ss_pred cc----cCCccccCCcccCeeeccccccccCCchhcc----CC---------CCCCEEEccCCCCc-cccCc--cccCCC
Q 003931 187 NY----TIPPELGLCTNLSYLALAVNQLSGGLPLSLS----NL---------SKLNDLGLSDNFLS-GEISA--NLIGNW 246 (785)
Q Consensus 187 ~~----~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~----~l---------~~L~~L~L~~n~l~-~~~~~--~~~~~l 246 (785)
+. .++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|.+. +.++. ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 76 4566777888888888888888654433333 33 78888888888876 23331 235567
Q ss_pred CCCCEEEeecCcCcc-----cCCccCcCCCCCcEEECcCcccc----ccCChhccCCCCCCEEECcCCccccc----CCc
Q 003931 247 TELESLQIQNNSFMG-----NIPPEIGLLTKLQYLFLYRNNFS----GPIPSEIEKLTSLENLDLSGNQLSGT----IPP 313 (785)
Q Consensus 247 ~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~p~~~~~l~~L~~L~Ls~n~l~~~----~p~ 313 (785)
++|++|++++|.+.. ..+..+..+++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++. ++.
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 778888888887762 23336667777777777777775 45666777777777777777777654 344
Q ss_pred cC--cCCCCCCEEEcccccccC----CCCCCC-CCCCCCCEEEccCCcCcccc
Q 003931 314 TL--WNLTNLLSLQLFSNNLSG----TIPPEI-GSMASLVAFDVNTNQLHGEL 359 (785)
Q Consensus 314 ~l--~~l~~L~~L~L~~n~l~~----~~p~~~-~~l~~L~~L~l~~n~l~~~~ 359 (785)
.+ +.+++|++|++++|.+++ .+|..+ .++++|+.|++++|.+++..
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 44 236777777777777765 244444 44666666666666666444
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.7e-21 Score=200.11 Aligned_cols=194 Identities=27% Similarity=0.314 Sum_probs=100.5
Q ss_pred cCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCc
Q 003931 26 SSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLE 105 (785)
Q Consensus 26 ~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~ 105 (785)
..+++|++|++++|.++.++ ++..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .|..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~--~~~~l~~L~ 110 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS--AIAGLQSIK 110 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG--GGTTCTTCC
T ss_pred HHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch--hhcCCCCCC
Confidence 44556666666666655543 35555566666666655554433 5555555555555555542 22 134555555
Q ss_pred EEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCc
Q 003931 106 YLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 185 (785)
Q Consensus 106 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 185 (785)
+|++++|.+++.. .+..+++|++|++++|.+++..+ ++.+++|++|++++|.
T Consensus 111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--------------------------l~~l~~L~~L~l~~n~ 162 (308)
T 1h6u_A 111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--------------------------LAGLTNLQYLSIGNAQ 162 (308)
T ss_dssp EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--------------------------GGGCTTCCEEECCSSC
T ss_pred EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--------------------------ccCCCCccEEEccCCc
Confidence 5555555554321 24445555555555554443221 4444455555555554
Q ss_pred CcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcc
Q 003931 186 LNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMG 261 (785)
Q Consensus 186 l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 261 (785)
+++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|.+++ +++ +..+++|+.|++++|.+++
T Consensus 163 l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 163 VSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-VSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc-ccc--ccCCCCCCEEEccCCeeec
Confidence 443221 4445555555555555543322 5555666666666666653 222 5666666666666666653
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=6.4e-22 Score=205.47 Aligned_cols=223 Identities=17% Similarity=0.198 Sum_probs=174.9
Q ss_pred CCcEEEccCCCCCCCcc---ccccCCCCCCEEeCCCCCCCCCCcccc--CCCCCCcEEEccCCCCcccCC----ccCCCC
Q 003931 6 ELQYLSVYDNNLNGAIP---FQLSSLRKVRYLDLGGNFLETPDWSKF--SSMPSLTHLGLYLNELTLEFP----SFILTC 76 (785)
Q Consensus 6 ~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~L~~n~i~~~~~~~f--~~l~~L~~L~L~~n~i~~~~~----~~~~~l 76 (785)
.++.+.+.++.++...- ..+..+++|++|++++|.+....+..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46788888877653211 112345679999999999988777777 889999999999999886544 445678
Q ss_pred CCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCccc---C-CccccCCCCCcEEEcCCCcccccCCc----CCCC
Q 003931 77 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGK---L-SPNVSKLSNLIDLRLATNKFSGPIPG----DIGS 148 (785)
Q Consensus 77 ~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~---~-~~~~~~l~~L~~L~L~~n~~~~~~~~----~l~~ 148 (785)
++|++|++++|.+. .++...|..+++|++|+|++|++.+. . +..+..+++|++|++++|+++.. +. .++.
T Consensus 145 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~~ 222 (310)
T 4glp_A 145 PGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGVCAALAAA 222 (310)
T ss_dssp SCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHHHHHHHHH
T ss_pred cCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHHHHHHHhc
Confidence 89999999999997 45555668999999999999987642 1 23346788999999999998732 22 2467
Q ss_pred CCCCCEEEcccCcccccCCccccCC---CCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCC
Q 003931 149 MSNLQLVELFNNSFTGQIPSSLGQL---KNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLN 225 (785)
Q Consensus 149 l~~L~~L~L~~n~~~~~~~~~l~~l---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 225 (785)
+++|++|++++|.+.+..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 8999999999999998878777776 69999999999998 5676664 7999999999999864 33 67889999
Q ss_pred EEEccCCCCc
Q 003931 226 DLGLSDNFLS 235 (785)
Q Consensus 226 ~L~L~~n~l~ 235 (785)
.|++++|.++
T Consensus 298 ~L~L~~N~l~ 307 (310)
T 4glp_A 298 NLTLDGNPFL 307 (310)
T ss_dssp CEECSSTTTS
T ss_pred EEECcCCCCC
Confidence 9999999986
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=4.7e-21 Score=198.27 Aligned_cols=192 Identities=23% Similarity=0.308 Sum_probs=157.1
Q ss_pred CCCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEE
Q 003931 3 DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL 82 (785)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 82 (785)
++++|++|++++|.++.. + .+..+++|++|++++|.++.+.+ |..+++|++|++++|.+++. ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 467899999999999865 3 58999999999999999998875 99999999999999999865 368999999999
Q ss_pred ECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcc
Q 003931 83 DLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSF 162 (785)
Q Consensus 83 ~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~ 162 (785)
++++|.+++ ++. |..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 113 ~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 113 DLTSTQITD-VTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp ECTTSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCCCCCC-chh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 999999984 554 6899999999999999986544 8899999999999999986433 78888888888888888
Q ss_pred cccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccc
Q 003931 163 TGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLS 211 (785)
Q Consensus 163 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~ 211 (785)
++..+ +..+++|++|++++|.+++.. .+..+++|+.|++++|.++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 75433 677777777777777776443 2555566666666666554
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.7e-20 Score=186.80 Aligned_cols=179 Identities=22% Similarity=0.255 Sum_probs=116.2
Q ss_pred CCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEEC
Q 003931 30 KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNL 109 (785)
Q Consensus 30 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~L 109 (785)
..++++++++.++.++.. +. +++++|++++|.+++..+..|.++++|++|++++|.+++ ++...|..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEEC
Confidence 456777877777776543 22 467777777777777777777777777777777777763 44455567777777777
Q ss_pred CCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCccc
Q 003931 110 TENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYT 189 (785)
Q Consensus 110 s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 189 (785)
++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|+.+++|++|++++|.+++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 77777766666666666777777777766655555556666666666666666655555566666666666666666555
Q ss_pred CCccccCCcccCeeecccccccc
Q 003931 190 IPPELGLCTNLSYLALAVNQLSG 212 (785)
Q Consensus 190 ~~~~~~~l~~L~~L~l~~n~i~~ 212 (785)
.+..+..+++|++|++++|.+.+
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHHHHhCCCCCCEEEeeCCceeC
Confidence 44455555555555555555543
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.8e-20 Score=197.94 Aligned_cols=200 Identities=17% Similarity=0.029 Sum_probs=115.7
Q ss_pred CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcE-EECC
Q 003931 32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY-LNLT 110 (785)
Q Consensus 32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~-L~Ls 110 (785)
++++.++++++.++.+. .+++++|+|++|.|+.+.+.+|.++++|++|+|++|.+.+.+|..+|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45666666666665322 2466777777777776666667777777777777777655666666677766654 4555
Q ss_pred CCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEccc-CcccccCCccccCCC-CCCEEEcccCcCcc
Q 003931 111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFN-NSFTGQIPSSLGQLK-NLQHLDLRMNALNY 188 (785)
Q Consensus 111 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~ 188 (785)
+|+++...+..|..+++|++|++++|+++...+..+....++..+++.+ +.+....+..|..+. .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 5666666666666777777777777766655554555555566666654 344444444444443 45566666666653
Q ss_pred cCCccccCCcccCeeeccc-cccccCCchhccCCCCCCEEEccCCCCc
Q 003931 189 TIPPELGLCTNLSYLALAV-NQLSGGLPLSLSNLSKLNDLGLSDNFLS 235 (785)
Q Consensus 189 ~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 235 (785)
. +......++|+.+++.+ |.++...+..|..+++|++|++++|+++
T Consensus 169 i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 169 I-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp E-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred C-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 3 22222344555555543 3344333334455555555555555554
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=9.6e-20 Score=177.11 Aligned_cols=179 Identities=26% Similarity=0.325 Sum_probs=89.0
Q ss_pred EEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCC
Q 003931 9 YLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNK 88 (785)
Q Consensus 9 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 88 (785)
.++.+++.++.++.. -.++|++|++++|.++.+....|..+++|++|++++|.+++..+..|..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTG---IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCC---CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 445555554433221 12355555555555555555555555555555555555554444444555555555555555
Q ss_pred CcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCc
Q 003931 89 LSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPS 168 (785)
Q Consensus 89 i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~ 168 (785)
++ .++...|..+++|++|++++|.+++..+.. +..+++|++|++++|.+++..+.
T Consensus 88 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------------------------~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 88 LQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGV------------------------FDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT------------------------TTTCTTCCEEECCSSCCSCCCTT
T ss_pred CC-ccCHhHhcCccCCCEEEcCCCcCcccCHhH------------------------hccCCcCCEEECCCCccceeCHH
Confidence 54 334343444555555555555544444334 44455555555555555444444
Q ss_pred cccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCC
Q 003931 169 SLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLS 222 (785)
Q Consensus 169 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~ 222 (785)
.+..+++|++|++++|.+.+ .+++|+.|+++.|.++|.+|..++.++
T Consensus 143 ~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred HhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 44555555555555554432 234555555555555555555555443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.4e-19 Score=175.89 Aligned_cols=163 Identities=26% Similarity=0.291 Sum_probs=131.7
Q ss_pred CCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEE
Q 003931 77 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVE 156 (785)
Q Consensus 77 ~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 156 (785)
++|++|++++|.++ .++...|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+.++++|++|+
T Consensus 28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 28 AQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 46666777777666 45555566777777777777777766666677777888888888888766666688899999999
Q ss_pred cccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcc
Q 003931 157 LFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSG 236 (785)
Q Consensus 157 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~ 236 (785)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|.++|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence 99999988777778999999999999999998777778999999999999998764 45789999999999999
Q ss_pred ccCccccCCCCC
Q 003931 237 EISANLIGNWTE 248 (785)
Q Consensus 237 ~~~~~~~~~l~~ 248 (785)
.+|.. ++.++.
T Consensus 180 ~ip~~-~~~l~~ 190 (208)
T 2o6s_A 180 VVRNS-AGSVAP 190 (208)
T ss_dssp TBBCT-TSSBCT
T ss_pred eeecc-CccccC
Confidence 99987 666554
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.7e-19 Score=190.47 Aligned_cols=241 Identities=17% Similarity=0.077 Sum_probs=134.0
Q ss_pred cEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCC-cCCCCCCCCCE-EEc
Q 003931 80 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIP-GDIGSMSNLQL-VEL 157 (785)
Q Consensus 80 ~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~-L~L 157 (785)
++++.++++++ .+|..+ .+++++|+|++|+|+.+.+.+|.++++|++|+|++|++.+.+| ..|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45677777777 677654 2467777777777776555667777777777777777654333 45566666554 444
Q ss_pred ccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccc
Q 003931 158 FNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGE 237 (785)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~ 237 (785)
.+|.+....|..|..+++|++|++++|.+....+..+....++..+++.++ +.+. .
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------~~i~-~ 143 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------INIH-T 143 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------TTCC-E
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------cccc-c
Confidence 456666555666666666666666666665444333333334444444321 2222 3
Q ss_pred cCccccCCC-CCCCEEEeecCcCcccCCccCcCCCCCcEEECcC-ccccccCChhccCCCCCCEEECcCCcccccCCccC
Q 003931 238 ISANLIGNW-TELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYR-NNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTL 315 (785)
Q Consensus 238 ~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l 315 (785)
++...+..+ ..++.|++++|+++.. |.......+|+++++.+ |.++.+.+..|..+++|+.||+++|+++...+..
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~- 221 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEI-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG- 221 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEE-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS-
T ss_pred ccccchhhcchhhhhhccccccccCC-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh-
Confidence 333333333 2456666666666543 33333445666676654 4444333345667777777777777776443333
Q ss_pred cCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCC
Q 003931 316 WNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTN 353 (785)
Q Consensus 316 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n 353 (785)
+.+|+.|.+.++.-...+| .+..+++|+.+++.++
T Consensus 222 --~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 --LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp --CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred --hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 3344445444443333444 3566666666666543
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=2.1e-18 Score=191.28 Aligned_cols=186 Identities=25% Similarity=0.383 Sum_probs=97.4
Q ss_pred CCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecc
Q 003931 127 NLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALA 206 (785)
Q Consensus 127 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 206 (785)
+|+.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +..
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~---------- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA---------- 120 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT----------
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc----------
Confidence 56666666666664 44333 255666666666555 333 234455555555555543 333 322
Q ss_pred ccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCcccccc
Q 003931 207 VNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGP 286 (785)
Q Consensus 207 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 286 (785)
+|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++
T Consensus 121 ----------------~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~- 174 (571)
T 3cvr_A 121 ----------------SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF- 174 (571)
T ss_dssp ----------------TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-
T ss_pred ----------------CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-
Confidence 44444444444442 332 24445555555555543 332 34555566666665554
Q ss_pred CChhccCCCCCCEEECcCCcccccCCccCcCCCCC-------CEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcccc
Q 003931 287 IPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNL-------LSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL 359 (785)
Q Consensus 287 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L-------~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 359 (785)
+|. |. ++|+.|+|++|.++ .+|. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|.+++..
T Consensus 175 lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 175 LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 444 43 56666666666665 3443 332 44 66666666666 45555556666666666666666666
Q ss_pred Cccccc
Q 003931 360 PENISR 365 (785)
Q Consensus 360 ~~~~~~ 365 (785)
|..+..
T Consensus 247 p~~l~~ 252 (571)
T 3cvr_A 247 RESLSQ 252 (571)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655544
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=4e-18 Score=166.67 Aligned_cols=152 Identities=24% Similarity=0.269 Sum_probs=85.3
Q ss_pred cEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCC
Q 003931 8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLN 87 (785)
Q Consensus 8 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n 87 (785)
+.++++++.++.++. .+. ++|+.|++++|.|+.+.+.+|..+++|++|++++|.++++.|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~-~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-NLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCS-SCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCC-ccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 345566665554332 221 45666666666666665556666666666666666666555666666666666666666
Q ss_pred CCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccc
Q 003931 88 KLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT 163 (785)
Q Consensus 88 ~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~ 163 (785)
.++ .+|..+|..+++|++|+|++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|.+.
T Consensus 91 ~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 665 455555555666666666666555555555555555555555555555444444555555555555555443
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=5e-18 Score=188.20 Aligned_cols=186 Identities=26% Similarity=0.349 Sum_probs=145.4
Q ss_pred CCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEEC
Q 003931 30 KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNL 109 (785)
Q Consensus 30 ~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~L 109 (785)
+|+.|++++|.++.++...+ ++|++|++++|.++. +| ..+++|++|++++|.+++ +|. + .. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l-~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-L-PA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-C-CT--TCCEEEC
T ss_pred CccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-h-hc--CCCEEEC
Confidence 88888888888887665432 678888888888884 44 456888899999998884 776 3 44 8889999
Q ss_pred CCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCccc
Q 003931 110 TENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYT 189 (785)
Q Consensus 110 s~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 189 (785)
++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. |. ++|++|++++|.++ .
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 9998886 444 67889999999998886 454 57889999999998886 565 65 78999999999988 5
Q ss_pred CCccccCCccc-------CeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCC
Q 003931 190 IPPELGLCTNL-------SYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGN 245 (785)
Q Consensus 190 ~~~~~~~l~~L-------~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~ 245 (785)
+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++.+|.. +..
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~-l~~ 252 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRES-LSQ 252 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH-HHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH-HHH
Confidence 555 554 67 99999999998 56777878999999999999999877766 443
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2e-18 Score=176.80 Aligned_cols=171 Identities=27% Similarity=0.324 Sum_probs=86.9
Q ss_pred cCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCc
Q 003931 26 SSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLE 105 (785)
Q Consensus 26 ~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~ 105 (785)
..+++|++|++++|.+..+. .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++. +..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS--LKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG--GTTCTTCC
T ss_pred hhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh--hccCCCCC
Confidence 44555666666666555542 35555556666666555554433 5555555555555555542 332 35555555
Q ss_pred EEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCc
Q 003931 106 YLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA 185 (785)
Q Consensus 106 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 185 (785)
+|++++|.+++. ..+..+++|+.|++++|++++. ..++.+++|++|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--------------------------~~l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--------------------------TVLSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--------------------------GGGGGCTTCSEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--------------------------hhhccCCCCCEEEccCCc
Confidence 555555555532 2344445555555555544432 234444444444444444
Q ss_pred CcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCc
Q 003931 186 LNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLS 235 (785)
Q Consensus 186 l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 235 (785)
+++..+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|.+.
T Consensus 168 l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 168 ISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred cccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 443322 44445555555555555432 2 2555566666666666554
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.7e-18 Score=175.82 Aligned_cols=171 Identities=26% Similarity=0.294 Sum_probs=150.3
Q ss_pred CCCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEE
Q 003931 3 DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL 82 (785)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 82 (785)
++++|+.|++++|.++... .+..+++|++|++++|.++.+.+ |..+++|++|++++|.+++. ..+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 4678999999999998663 48899999999999999998775 99999999999999999864 348999999999
Q ss_pred ECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcc
Q 003931 83 DLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSF 162 (785)
Q Consensus 83 ~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~ 162 (785)
++++|.+++ ++ .+..+++|++|++++|.+++. ..+..+++|+.|++++|++++..+ +..+++|++|++++|.+
T Consensus 118 ~L~~n~i~~-~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 118 SLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp ECTTSCCCC-CG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCC-Ch--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 999999984 43 358999999999999999965 679999999999999999997654 88999999999999999
Q ss_pred cccCCccccCCCCCCEEEcccCcCcc
Q 003931 163 TGQIPSSLGQLKNLQHLDLRMNALNY 188 (785)
Q Consensus 163 ~~~~~~~l~~l~~L~~L~l~~n~l~~ 188 (785)
++. + .+..+++|+.|++++|.+..
T Consensus 191 ~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 191 SDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCC-h-hhccCCCCCEEECcCCcccC
Confidence 864 3 48889999999999998864
No 104
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.77 E-value=5.2e-17 Score=173.20 Aligned_cols=264 Identities=10% Similarity=0.099 Sum_probs=132.9
Q ss_pred CCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEE
Q 003931 29 RKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLN 108 (785)
Q Consensus 29 ~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~ 108 (785)
..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++ .++...|.+|++|+.++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEE
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeee
Confidence 3444444433 2444444444443 3444444433 444444444443 344444443 233 34444444455555555
Q ss_pred CCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcc
Q 003931 109 LTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY 188 (785)
Q Consensus 109 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 188 (785)
+++|.++.....+|. +.+|+.+.+..+ ++.+...+|.+|++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.++.
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccE
Confidence 544444444444443 344555554422 33334444555555555555442 33333344444 445555552 23333
Q ss_pred cCCccccCCcccCeeeccccccc-----cCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccC
Q 003931 189 TIPPELGLCTNLSYLALAVNQLS-----GGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNI 263 (785)
Q Consensus 189 ~~~~~~~~l~~L~~L~l~~n~i~-----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 263 (785)
.....|.+|++|+.+.+.+|.+. ...+.+|.++++|+.+.+.+ .++ .++..+|.++++|+.+.+..+ +....
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 44445555555555555544433 23445566666666666663 344 555556666677777776443 55455
Q ss_pred CccCcCCCCCcEEECcCccccccCChhccCCC-CCCEEECcCCcc
Q 003931 264 PPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLT-SLENLDLSGNQL 307 (785)
Q Consensus 264 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~Ls~n~l 307 (785)
+.+|..+ +|+.+++.+|.+....+..|.+++ .++.|.+..+.+
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 5666666 677777777766555555566653 566666665543
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=6.5e-19 Score=197.70 Aligned_cols=183 Identities=24% Similarity=0.303 Sum_probs=92.3
Q ss_pred EccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCc
Q 003931 11 SVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLS 90 (785)
Q Consensus 11 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~ 90 (785)
.+..+.+....+ +..+++|+.|++++|.+..++ .|..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.
T Consensus 27 ~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~ 100 (605)
T 1m9s_A 27 NLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK 100 (605)
T ss_dssp HTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred hccCCCcccccc--hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC
Confidence 344444443322 345666666666666665543 35556666666666666655443 555566666666666555
Q ss_pred ccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccc
Q 003931 91 GLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL 170 (785)
Q Consensus 91 ~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l 170 (785)
.+| .+..+++|++|+|++|.+.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +
T Consensus 101 -~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l 171 (605)
T 1m9s_A 101 -DLS--SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 171 (605)
T ss_dssp -CCT--TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred -CCh--hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h
Confidence 233 135555555555555555532 2355555555555555555433 334445555555555555444333 4
Q ss_pred cCCCCCCEEEcccCcCcccCCccccCCcccCeeecccccc
Q 003931 171 GQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQL 210 (785)
Q Consensus 171 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i 210 (785)
..+++|++|+|++|.+++. ..+..+++|+.|++++|.+
T Consensus 172 ~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp TTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEE
T ss_pred ccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcC
Confidence 4444444444444444432 2233344444444444433
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=9.4e-18 Score=164.05 Aligned_cols=155 Identities=15% Similarity=0.230 Sum_probs=103.3
Q ss_pred eeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCc
Q 003931 202 YLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRN 281 (785)
Q Consensus 202 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 281 (785)
.+++++|.++. +|..+. +.+++|++++|.+++..+..+++.+++|++|++++|.+++..+..|..+++|++|+|++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 44555555442 333322 234566666666664444444666677777777777777666666777777777777777
Q ss_pred cccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcccc
Q 003931 282 NFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL 359 (785)
Q Consensus 282 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 359 (785)
.+++..+..|..+++|++|+|++|++++..|..|..+++|++|++++|++++..|..+..+++|+.+++++|.+.+..
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 777666666777777777777777777766777777777777777777777666777777777777777777766543
No 107
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=3.4e-19 Score=186.46 Aligned_cols=285 Identities=13% Similarity=0.081 Sum_probs=163.4
Q ss_pred CCCCCEEeCCCCCCCCCCccccCC-CCCCcEEEccCCCCc--ccCCccCCCCCCccEEECCCCCCcccCChhhhcC----
Q 003931 28 LRKVRYLDLGGNFLETPDWSKFSS-MPSLTHLGLYLNELT--LEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTN---- 100 (785)
Q Consensus 28 l~~L~~L~L~~n~i~~~~~~~f~~-l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~---- 100 (785)
+.+++.|.++++ +...+...+.. +++|++|+|++|.+. ......+ +.++.+.+..+ .+|...|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT----EECTTTTEEEETT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccc----ccCHHHhcccccc
Confidence 456677777653 22112222333 667777777777766 2222222 22444555544 456666777
Q ss_pred ----CCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCc----ccccCCccccC
Q 003931 101 ----LGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNS----FTGQIPSSLGQ 172 (785)
Q Consensus 101 ----l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~----~~~~~~~~l~~ 172 (785)
+++|++|+|.+ .++.+...+|.+|++|+.+++++|.+....+..|.++.++..+....+. .......+|..
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 77777777777 6776677777777777777777777766666777776666666655421 12223344555
Q ss_pred CCCCC-EEEcccCcC-cccCCccccCCcccCeeeccccccccCCchhc-cCCCCCCEEEccCCCCccccCccccCCCCCC
Q 003931 173 LKNLQ-HLDLRMNAL-NYTIPPELGLCTNLSYLALAVNQLSGGLPLSL-SNLSKLNDLGLSDNFLSGEISANLIGNWTEL 249 (785)
Q Consensus 173 l~~L~-~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 249 (785)
+..|+ .+.+....- .......-....+++.+.+.++-.. .....+ ..+++|+.+++++|.++ .++..+|.++++|
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~~~~~L 252 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFAQKKYL 252 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCC-EECTTTTTTCTTC
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcc-eecHhhhhCCCCC
Confidence 55665 444432211 0000000112344555555443221 111111 23667777777777766 6666667777777
Q ss_pred CEEEeecCcCcccCCccCcCCCCCc-EEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEE
Q 003931 250 ESLQIQNNSFMGNIPPEIGLLTKLQ-YLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQ 325 (785)
Q Consensus 250 ~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 325 (785)
+++++.+| +....+.+|..|++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.++...+.+|.++++|+.++
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 77777766 5555556677777777 777766 55555566677777777777766766655566666666666665
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=9e-18 Score=164.18 Aligned_cols=154 Identities=23% Similarity=0.237 Sum_probs=86.0
Q ss_pred EEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCC-ccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEccc
Q 003931 81 YLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS-PNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFN 159 (785)
Q Consensus 81 ~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~ 159 (785)
.+++++|.++ .+|..+ ...+++|++++|.+++..+ ..|..+++|++|++++|++++..+..|.++++|++|++++
T Consensus 15 ~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4555555554 344432 2234555555555554432 3345555555555555555555555555556666666666
Q ss_pred CcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCcccc
Q 003931 160 NSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEI 238 (785)
Q Consensus 160 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 238 (785)
|.+++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|++++..|..|..+++|+.|++++|.+.+..
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 169 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC 169 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence 6655555555556666666666666666555555556666666666666666555556666666666666666655433
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=3.7e-18 Score=180.88 Aligned_cols=177 Identities=25% Similarity=0.165 Sum_probs=122.7
Q ss_pred CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCC-CCCCccEEECCCCCCcccCChhhhcCCCCCcEEECC
Q 003931 32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFIL-TCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT 110 (785)
Q Consensus 32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls 110 (785)
++++++++.++.++.... ..++.|+|++|.+++..+..|. .+++|++|++++|.++ .++...|.++++|++|+|+
T Consensus 21 ~~l~c~~~~l~~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 567777777766653322 3467777777777766666666 7777777777777776 4555556777777777777
Q ss_pred CCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccc---cCCCCCCEEEcccCcCc
Q 003931 111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSL---GQLKNLQHLDLRMNALN 187 (785)
Q Consensus 111 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l---~~l~~L~~L~l~~n~l~ 187 (785)
+|.++...+..|..+++|++|+|++|++++..+..|.++++|++|+|++|.+++..+..| ..+++|++|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 777776666677777777777777777776667777777777777777777775444444 56778888888888887
Q ss_pred ccCCccccCCcc--cCeeecccccccc
Q 003931 188 YTIPPELGLCTN--LSYLALAVNQLSG 212 (785)
Q Consensus 188 ~~~~~~~~~l~~--L~~L~l~~n~i~~ 212 (785)
...+..+..++. ++.|++++|.+..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 655556666665 4778888887763
No 110
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=4.4e-19 Score=185.67 Aligned_cols=287 Identities=13% Similarity=0.059 Sum_probs=203.3
Q ss_pred CCCCcEEEccCCCCCCCccccccC-CCCCCEEeCCCCCCC--CCCccccCCCCCCcEEEccCCCCcccCCccCCC-----
Q 003931 4 LSELQYLSVYDNNLNGAIPFQLSS-LRKVRYLDLGGNFLE--TPDWSKFSSMPSLTHLGLYLNELTLEFPSFILT----- 75 (785)
Q Consensus 4 l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~L~~n~i~--~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~----- 75 (785)
+.+++.|.++++ +.......+.. +++|++|||++|+|. ....+.+. .++.+.+..+ .+.+.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~---~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMAN---FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTT---EECTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccc---cccccccccc---ccCHHHhccccccc
Confidence 456788888864 32221223333 788999999999887 33333332 3455555555 344567777
Q ss_pred ---CCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcc----cccCCcCCCC
Q 003931 76 ---CRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKF----SGPIPGDIGS 148 (785)
Q Consensus 76 ---l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~----~~~~~~~l~~ 148 (785)
|++|+.+++++ .++ .++...|.+|++|++|++++|.+..+.+.+|.++.++..+.+..+.. .......|.+
T Consensus 97 ~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~ 174 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE 174 (329)
T ss_dssp EEECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred ccccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence 89999999988 777 68888889999999999999988888888898888888877766322 2223445667
Q ss_pred CCCCC-EEEcccCccc-ccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCE
Q 003931 149 MSNLQ-LVELFNNSFT-GQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLND 226 (785)
Q Consensus 149 l~~L~-~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~ 226 (785)
+..|+ .+.+...... ......-....+++.+.+.++-...........+++|+.+++++|.++...+.+|.++++|+.
T Consensus 175 ~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 175 GEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp SCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 77777 5555433211 000011113456677777665322111111124788999999998888777888999999999
Q ss_pred EEccCCCCccccCccccCCCCCCC-EEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEEC
Q 003931 227 LGLSDNFLSGEISANLIGNWTELE-SLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDL 302 (785)
Q Consensus 227 L~L~~n~l~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 302 (785)
+++.+| ++ .++..+|.++++|+ .+++.+ .+....+.+|..|++|+.++++.|.++.+.+.+|.++++|+.++.
T Consensus 255 l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 255 IKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EECCcc-cc-eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999988 65 78888899999999 999988 777777889999999999999999998888889999999998864
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.5e-17 Score=162.71 Aligned_cols=152 Identities=23% Similarity=0.224 Sum_probs=85.1
Q ss_pred cEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEccc
Q 003931 80 TYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFN 159 (785)
Q Consensus 80 ~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~ 159 (785)
+.++++++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 34555555555 455433 14556666666666555555555566666666666666555555555666666666666
Q ss_pred CcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCc
Q 003931 160 NSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLS 235 (785)
Q Consensus 160 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~ 235 (785)
|.++...+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 6655444444555556666666666555555555555555555555555555444444555555555555555543
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=9.4e-18 Score=177.78 Aligned_cols=176 Identities=24% Similarity=0.196 Sum_probs=109.9
Q ss_pred cEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhc-CCCCCcEEECCCCCCcccCCccccCCCCCcEEEcC
Q 003931 56 THLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFT-NLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLA 134 (785)
Q Consensus 56 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~-~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 134 (785)
++++++++.++.+ |..+. +.++.|+|++|.++ .++...|. ++++|++|+|++|.+++..+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~i-P~~~~--~~l~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSLP--SYTALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSSC-CSSCC--TTCSEEECCSSCCC-EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCcc-CccCC--CCCCEEECCCCCCC-ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 4566666666543 33332 34666777777666 34444445 66677777777777666666666667777777777
Q ss_pred CCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccc---cCCcccCeeeccccccc
Q 003931 135 TNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL---GLCTNLSYLALAVNQLS 211 (785)
Q Consensus 135 ~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~i~ 211 (785)
+|++++..+..|.++++|++|+|++|.+.+..|..|..+++|++|++++|.++...+..+ ..+++|+.|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 777666555566666777777777777666666666667777777777776664333333 45666777777777766
Q ss_pred cCCchhccCCCC--CCEEEccCCCCc
Q 003931 212 GGLPLSLSNLSK--LNDLGLSDNFLS 235 (785)
Q Consensus 212 ~~~~~~l~~l~~--L~~L~L~~n~l~ 235 (785)
+..+..+..++. ++.|++++|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 555555665555 366667766665
No 113
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.74 E-value=1.7e-16 Score=169.28 Aligned_cols=270 Identities=10% Similarity=0.066 Sum_probs=198.6
Q ss_pred cCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCC
Q 003931 49 FSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNL 128 (785)
Q Consensus 49 f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 128 (785)
+..+..++.+.+.. .++.+...+|.++ +|+.+.+..+ ++ .++...|.++ +|+.+.+.. .++.+...+|.+|++|
T Consensus 109 ~~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 109 TEILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp EEECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred EEecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccC
Confidence 34456777887765 3666777778775 6888888776 55 5777777774 688888875 5666777788888888
Q ss_pred cEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcccCeeecccc
Q 003931 129 IDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVN 208 (785)
Q Consensus 129 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 208 (785)
+.++++.|.++......|. +.+|+.+.+..+ ++.+...+|.++++|+.+++..+ ++.....+|.+ .+|+.+.+ .+
T Consensus 183 ~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~ 257 (401)
T 4fdw_A 183 KKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PN 257 (401)
T ss_dssp CEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ET
T ss_pred CeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CC
Confidence 8888888888866666666 578888888744 66666777888888888888764 55455566666 67888888 44
Q ss_pred ccccCCchhccCCCCCCEEEccCCCCc----cccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCcccc
Q 003931 209 QLSGGLPLSLSNLSKLNDLGLSDNFLS----GEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFS 284 (785)
Q Consensus 209 ~i~~~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 284 (785)
.++.....+|.++++|+.+.+.+|.+. ..++..+|.++++|+.+.+.+ .+......+|..|++|+.+.+..+ ++
T Consensus 258 ~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~ 335 (401)
T 4fdw_A 258 GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT 335 (401)
T ss_dssp TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC
T ss_pred CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc
Confidence 566566778888888888888877653 136666788888888888874 466666677888888888888554 66
Q ss_pred ccCChhccCCCCCCEEECcCCcccccCCccCcCCC-CCCEEEccccccc
Q 003931 285 GPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLT-NLLSLQLFSNNLS 332 (785)
Q Consensus 285 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~ 332 (785)
.+.+.+|.++ +|+.+++++|.+....+..|.+++ +++.|++..+.+.
T Consensus 336 ~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 336 QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 5667778888 888888888887766666777774 6778888776543
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.7e-17 Score=186.22 Aligned_cols=176 Identities=25% Similarity=0.285 Sum_probs=155.5
Q ss_pred CCCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEE
Q 003931 3 DLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYL 82 (785)
Q Consensus 3 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 82 (785)
++++|+.|++++|.+.... .|..+++|+.|+|++|.+..+.+ |..+++|+.|+|++|.+.+. ..+..+++|+.|
T Consensus 41 ~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L 114 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSL 114 (605)
T ss_dssp HHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEE
T ss_pred cCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEE
Confidence 4788999999999998653 48999999999999999998775 89999999999999999864 378999999999
Q ss_pred ECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcc
Q 003931 83 DLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSF 162 (785)
Q Consensus 83 ~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~ 162 (785)
+|++|.+.+ ++. |..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+
T Consensus 115 ~Ls~N~l~~-l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 115 SLEHNGISD-ING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp ECTTSCCCC-CGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EecCCCCCC-Ccc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 999999984 443 58999999999999999975 679999999999999999997666 89999999999999999
Q ss_pred cccCCccccCCCCCCEEEcccCcCcccCCcc
Q 003931 163 TGQIPSSLGQLKNLQHLDLRMNALNYTIPPE 193 (785)
Q Consensus 163 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 193 (785)
.+. ..+..+++|+.|++++|.+.+.....
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEECCCCCC
T ss_pred CCC--hHHccCCCCCEEEccCCcCcCCcccc
Confidence 864 46999999999999999997644333
No 115
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.74 E-value=1.7e-16 Score=170.42 Aligned_cols=335 Identities=12% Similarity=0.027 Sum_probs=245.9
Q ss_pred CCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChh
Q 003931 17 LNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPER 96 (785)
Q Consensus 17 i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~ 96 (785)
++.+...+|.++.+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++.+...+|.++.+|+.+.+..+ +. .+...
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~ 134 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVE 134 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecce
Confidence 5566778899999999999975 488888889999999999999765 66677788999999998888765 33 46667
Q ss_pred hhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCC
Q 003931 97 LFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNL 176 (785)
Q Consensus 97 ~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 176 (785)
.|.++..++...... +......+|.+|++|+.+.+..+.. ......|.++.+|+.+++..+ ++.....+|.++..|
T Consensus 135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccccccCcc--ccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 777776555444333 3334567888999999999876643 356677888999999888776 454566778888888
Q ss_pred CEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeec
Q 003931 177 QHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQN 256 (785)
Q Consensus 177 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 256 (785)
+.+.+..+... +.........|+.+.+... ++......+..+..++.+.+..+.. .+....|..+..++.+....
T Consensus 211 ~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~ 285 (394)
T 4fs7_A 211 ENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGS 285 (394)
T ss_dssp CBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECS
T ss_pred ceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc--eeeccccccccccceeccCc
Confidence 88887766442 2334445677888877643 3334456778888899998887754 45556688888888888776
Q ss_pred CcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCC
Q 003931 257 NSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIP 336 (785)
Q Consensus 257 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 336 (785)
..+ ....|..+.+|+.+.+..+ ++.+...+|.++.+|+.+++..+ ++.....+|.++++|+.+++..+ ++....
T Consensus 286 ~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~ 359 (394)
T 4fs7_A 286 VIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGA 359 (394)
T ss_dssp SEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred eee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehH
Confidence 542 3346788889999988765 55566778888999999999754 66566678889999999998776 655666
Q ss_pred CCCCCCCCCCEEEccCCcCccccCccccccCCCcEE
Q 003931 337 PEIGSMASLVAFDVNTNQLHGELPENISRLVKLNKF 372 (785)
Q Consensus 337 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l 372 (785)
.+|.+|.+|+.+++..+- . .+...|.++++|+.+
T Consensus 360 ~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 360 NAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred HHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 788899999999886542 2 234567777777654
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=4.7e-17 Score=160.26 Aligned_cols=153 Identities=24% Similarity=0.227 Sum_probs=102.7
Q ss_pred CCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECC
Q 003931 31 VRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLT 110 (785)
Q Consensus 31 L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls 110 (785)
-+.++.+++.++.++.... ++|++|++++|.+++..+..|..+++|++|++++|.++ .+|...|..+++|++|+|+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcCccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence 3456666666666654322 56777777777777666666777777777777777775 5565666677777777777
Q ss_pred CCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcc
Q 003931 111 ENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY 188 (785)
Q Consensus 111 ~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 188 (785)
+|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 77777666666666777777777777776 456666677777777777777766555566677777777777776653
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=6.5e-17 Score=159.22 Aligned_cols=155 Identities=23% Similarity=0.263 Sum_probs=139.5
Q ss_pred CcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCC
Q 003931 7 LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL 86 (785)
Q Consensus 7 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 86 (785)
-+.++.+++.++.++.. + .++|++|++++|.++.+.+.+|..+++|++|++++|.++.+.+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45789999988855442 3 38999999999999999999999999999999999999988888899999999999999
Q ss_pred CCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccC
Q 003931 87 NKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQI 166 (785)
Q Consensus 87 n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 166 (785)
|.++ .++...|..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|.+....
T Consensus 98 N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 98 NQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9999 677777899999999999999999 67888999999999999999999877788999999999999999987543
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=5.1e-18 Score=170.88 Aligned_cols=168 Identities=19% Similarity=0.241 Sum_probs=113.8
Q ss_pred CCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEEC
Q 003931 5 SELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDL 84 (785)
Q Consensus 5 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L 84 (785)
.++..++++++.+++.. .+..+++|++|++++|.++.++ .+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34455667777776544 4677778888888888777665 56777777788887777776554 777777777777
Q ss_pred CCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccc
Q 003931 85 SLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG 164 (785)
Q Consensus 85 s~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~ 164 (785)
++|.++ .+|.. .. ++|++|++++|.+++. ..+..+++|+.|++++|++++. + .+..+++|++|++++|.+.+
T Consensus 93 ~~N~l~-~l~~~--~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 93 NRNRLK-NLNGI--PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CSSCCS-CCTTC--CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCccC-CcCcc--cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 777776 35542 22 7777777777777653 3466777777777777777653 2 46667777777777777665
Q ss_pred cCCccccCCCCCCEEEcccCcCcc
Q 003931 165 QIPSSLGQLKNLQHLDLRMNALNY 188 (785)
Q Consensus 165 ~~~~~l~~l~~L~~L~l~~n~l~~ 188 (785)
. ..+..+++|++|++++|.+..
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEEC
T ss_pred h--HHhccCCCCCEEeCCCCcccC
Confidence 4 456666677777777666653
No 119
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.72 E-value=3.3e-16 Score=168.16 Aligned_cols=319 Identities=13% Similarity=0.057 Sum_probs=250.6
Q ss_pred CCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCC
Q 003931 40 FLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLS 119 (785)
Q Consensus 40 ~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~ 119 (785)
.++.|...||.+|.+|+.+.+..+ ++.+...+|.+|++|+.++++.+ ++ .++...|.++.+|+.+.+..+ +.....
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-eeeecc
Confidence 467788899999999999999854 77788899999999999999876 55 688888999999999888754 555677
Q ss_pred ccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccCCcc
Q 003931 120 PNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGLCTN 199 (785)
Q Consensus 120 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 199 (785)
.+|.++..+........ ......+|.++++|+.+.+..+. ......+|..+.+|+.+++..+ ++......|.++..
T Consensus 134 ~aF~~~~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTTTCCCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTT
T ss_pred eeeecccccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccc
Confidence 78888866555444333 22445679999999999998654 4466678999999999999876 55566778899999
Q ss_pred cCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECc
Q 003931 200 LSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLY 279 (785)
Q Consensus 200 L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 279 (785)
|+.+.+..+... +.........|+.+.+.... + .+....+..+..++.+.+..+... .....|..+..++.+...
T Consensus 210 L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~-~-~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 210 LENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF-T-ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYG 284 (394)
T ss_dssp CCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC-C-EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEEC
T ss_pred cceeecCCCceE--eehhhcccCCCceEEECCCc-e-ecccccccccccceeEEcCCCcce-eeccccccccccceeccC
Confidence 999988776543 22334456789999987653 2 566666889999999999877543 566788899999999887
Q ss_pred CccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcCcccc
Q 003931 280 RNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL 359 (785)
Q Consensus 280 ~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 359 (785)
.+.+ ....|..+.+|+.+.+..+ ++.....+|.++++|+.+++..+ ++.....+|.+|.+|+.+++..+ ++..-
T Consensus 285 ~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 285 SVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp SSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred ceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 7653 3356888999999999765 55566778999999999999754 66566778999999999999876 66666
Q ss_pred CccccccCCCcEEEecCc
Q 003931 360 PENISRLVKLNKFSVFTN 377 (785)
Q Consensus 360 ~~~~~~l~~L~~l~l~~n 377 (785)
..+|..|.+|+.+.+..+
T Consensus 359 ~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 359 ANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTBTTCTTCCEEEEEGG
T ss_pred HHHhhCCCCCCEEEECCC
Confidence 778999999999998655
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.4e-17 Score=157.37 Aligned_cols=154 Identities=12% Similarity=0.160 Sum_probs=107.7
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCC
Q 003931 25 LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL 104 (785)
Q Consensus 25 ~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L 104 (785)
...+++|++|++++|.++.++ .+..+++|++|++++|.+... ..+..+++|++|++++|.+++..+.. |..+++|
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTC
T ss_pred hhhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChh-hcCCCCC
Confidence 356667777777777777555 466777777777777755432 36677777777777777777544544 3677777
Q ss_pred cEEECCCCCCcccCCccccCCCCCcEEEcCCCc-ccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEccc
Q 003931 105 EYLNLTENQFQGKLSPNVSKLSNLIDLRLATNK-FSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRM 183 (785)
Q Consensus 105 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 183 (785)
++|++++|.+++..+..+..+++|++|++++|+ ++ .++ .+..+++|++|++++|.+++. + .+..+++|++|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeC
Confidence 777777777776667777777778888888777 54 334 577778888888888877753 3 577788888888888
Q ss_pred CcCc
Q 003931 184 NALN 187 (785)
Q Consensus 184 n~l~ 187 (785)
|.+.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 8765
No 121
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=6.5e-17 Score=155.36 Aligned_cols=152 Identities=21% Similarity=0.303 Sum_probs=86.7
Q ss_pred CCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcE
Q 003931 196 LCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQY 275 (785)
Q Consensus 196 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 275 (785)
.+++|++|++++|.++ .+| .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+..+..++.+++|++
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 3445555555555554 222 3555555666666655443 222 2556666666666666666555566666666666
Q ss_pred EECcCccccccCChhccCCCCCCEEECcCCc-ccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCc
Q 003931 276 LFLYRNNFSGPIPSEIEKLTSLENLDLSGNQ-LSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQ 354 (785)
Q Consensus 276 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~ 354 (785)
|++++|.+++..|..++.+++|++|++++|. ++ .+| .+..+++|++|++++|++++. + .+..+++|+.|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcc
Confidence 6666666665556666666666666666666 43 333 466666666666666666532 2 45556666666666665
Q ss_pred Cc
Q 003931 355 LH 356 (785)
Q Consensus 355 l~ 356 (785)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 53
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=8.3e-20 Score=203.81 Aligned_cols=105 Identities=22% Similarity=0.306 Sum_probs=59.1
Q ss_pred CCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECc
Q 003931 224 LNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLS 303 (785)
Q Consensus 224 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls 303 (785)
|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|+.|+|++|.+++ +| .++.+++|+.|+|+
T Consensus 443 L~~L~Ls~n~l~~-lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp CSEEECTTSCCSS-CCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred ceEEEecCCCCCC-CcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 5556666666552 443 555555666666655555 445555555555555555555554 34 45555555555555
Q ss_pred CCcccccC-CccCcCCCCCCEEEcccccccCC
Q 003931 304 GNQLSGTI-PPTLWNLTNLLSLQLFSNNLSGT 334 (785)
Q Consensus 304 ~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~ 334 (785)
+|++++.. |..++.+++|+.|++++|++++.
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 55555544 55555555555555555555543
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.67 E-value=1.4e-16 Score=160.32 Aligned_cols=150 Identities=20% Similarity=0.256 Sum_probs=132.0
Q ss_pred CCCCCCcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccE
Q 003931 2 GDLSELQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTY 81 (785)
Q Consensus 2 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 81 (785)
+++++|++|++++|.++... .+..+++|++|++++|.++.+.+ |..+++|++|++++|.+++..+ +.. ++|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~ 110 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACLSR 110 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSCCE
T ss_pred hhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCc--ccc-CcccE
Confidence 35789999999999998654 68999999999999999998875 9999999999999999987543 233 89999
Q ss_pred EECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCc
Q 003931 82 LDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNS 161 (785)
Q Consensus 82 L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~ 161 (785)
|++++|.+++ ++. |..+++|++|++++|++++. ..+..+++|++|++++|++++. ..+..+++|+.|++++|.
T Consensus 111 L~L~~N~l~~-~~~--l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 111 LFLDNNELRD-TDS--LIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp EECCSSCCSB-SGG--GTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred EEccCCccCC-Chh--hcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence 9999999984 543 68999999999999999975 3789999999999999999976 678999999999999999
Q ss_pred cccc
Q 003931 162 FTGQ 165 (785)
Q Consensus 162 ~~~~ 165 (785)
+.+.
T Consensus 184 ~~~~ 187 (263)
T 1xeu_A 184 CVNE 187 (263)
T ss_dssp EECC
T ss_pred ccCC
Confidence 9855
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=4.3e-17 Score=187.93 Aligned_cols=161 Identities=25% Similarity=0.322 Sum_probs=99.8
Q ss_pred cCCeeeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCc
Q 003931 472 SGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGE 551 (785)
Q Consensus 472 s~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~ 551 (785)
+.|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|+.|+|++|.++ .+|..|+.+++|+.|+|++|+++ .
T Consensus 209 ~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~ 284 (727)
T 4b8c_D 209 IENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-S 284 (727)
T ss_dssp --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-S
T ss_pred ccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-c
Confidence 334333 44556667777777777777776 45555667777777777777777 66777777777777777777777 6
Q ss_pred CCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCCcccchhhhhhheeecccccCCCCCCccccc
Q 003931 552 IPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIPQELGK 631 (785)
Q Consensus 552 ~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~~~l~ls~n~l~~~~~~~~~~ 631 (785)
+|..|..+++|++|+|++|.++ .+|..|+.+++|+.|+|++|++++.+|..+..+......+++++|.+++.+|..
T Consensus 285 lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~--- 360 (727)
T 4b8c_D 285 LPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE--- 360 (727)
T ss_dssp CCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---
T ss_pred cChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc---
Confidence 6777777777777777777776 556667777777777777777777777766555443333677777777766643
Q ss_pred CCCCceEeccCC
Q 003931 632 LTSLEILNLSRN 643 (785)
Q Consensus 632 l~~L~~L~l~~n 643 (785)
|..|++++|
T Consensus 361 ---l~~l~l~~n 369 (727)
T 4b8c_D 361 ---RRFIEINTD 369 (727)
T ss_dssp ------------
T ss_pred ---cceeEeecc
Confidence 334445554
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=6.3e-18 Score=188.65 Aligned_cols=195 Identities=23% Similarity=0.233 Sum_probs=127.4
Q ss_pred CCCCCcEEEccCCeeeeecccchhcccccceeccccce-------------eeeccCcchhccccCCeee-cccCccccC
Q 003931 462 VHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNR-------------ISGGIPAELGNLTRLGVLS-LDSNELTGK 527 (785)
Q Consensus 462 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------i~~~~~~~~~~l~~L~~L~-Ls~n~l~~~ 527 (785)
.+++|+.|++++|.+. .+|..++.|++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+...
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 3455555555555554 445556666666666665543 3445555666666666666 444433211
Q ss_pred CCc-----ccc--cCCCCCeecccCCcccCcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccC
Q 003931 528 IPT-----DLG--KLVKLFNLNLSNNHLTGEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEI 600 (785)
Q Consensus 528 ~~~-----~l~--~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 600 (785)
... .+. ....|+.|++++|++++ +|. +..+++|++|++++|+++ .+|..++.+++|+.|++++|++++ +
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-l 501 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-V 501 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-C
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-C
Confidence 000 000 01247788888888875 565 788888888888888887 667788888888888888888875 5
Q ss_pred CcccchhhhhhheeecccccCCCCC-CcccccCCCCceEeccCCceeeecCCc---ccccccceeee
Q 003931 601 PSNLGNLFVLQYMLDLSSNSLSGTI-PQELGKLTSLEILNLSRNQLSGRIPAS---LSSMISLRSVD 663 (785)
Q Consensus 601 p~~~~~l~~l~~~l~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~~l~~l~ 663 (785)
| .++++..|+. |++++|.+++.. |..++.+++|++|++++|++++.+|.. +..+++|+.|+
T Consensus 502 p-~l~~l~~L~~-L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 502 D-GVANLPRLQE-LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp G-GGTTCSSCCE-EECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred c-ccCCCCCCcE-EECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 5 6777777776 788888888776 778888888888888888887665432 22356666665
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=5.9e-17 Score=186.74 Aligned_cols=120 Identities=29% Similarity=0.384 Sum_probs=52.5
Q ss_pred CccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCC
Q 003931 70 PSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSM 149 (785)
Q Consensus 70 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 149 (785)
+..|..++.|+.|+|++|.+. .+|..+| .+++|++|+|++|.++ .+|..|..+++|++|+|++|.++ .+|..|+++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 344444444444555444444 3444442 4444444444444444 33444444444444444444444 334444444
Q ss_pred CCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccc
Q 003931 150 SNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPEL 194 (785)
Q Consensus 150 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 194 (785)
++|++|+|++|.++ .+|..|+.+++|++|+|++|.+++.+|..+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 44444444444443 334344444444444444444444444333
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=3.1e-15 Score=142.68 Aligned_cols=112 Identities=22% Similarity=0.352 Sum_probs=59.5
Q ss_pred CCCEEEeecCcCcccCCc-cCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEc
Q 003931 248 ELESLQIQNNSFMGNIPP-EIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQL 326 (785)
Q Consensus 248 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 326 (785)
++++|++++|.+.+..+. .++.+++|++|+|++|.+++..|.+|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 445555555555443332 2445555555555555555555555555555555555555555555545555555555555
Q ss_pred ccccccCCCCCCCCCCCCCCEEEccCCcCcccc
Q 003931 327 FSNNLSGTIPPEIGSMASLVAFDVNTNQLHGEL 359 (785)
Q Consensus 327 ~~n~l~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 359 (785)
++|++++..|..+..+++|+.+++++|.+.+..
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 555555555555555555555555555555443
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=4.3e-15 Score=141.74 Aligned_cols=111 Identities=27% Similarity=0.363 Sum_probs=59.0
Q ss_pred CccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEc
Q 003931 78 NLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVEL 157 (785)
Q Consensus 78 ~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L 157 (785)
+|++|++++|.+++..+..+|..+++|++|+|++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 44455555555442222223455555555555555555555555555555555555555555555555555555555555
Q ss_pred ccCcccccCCccccCCCCCCEEEcccCcCcc
Q 003931 158 FNNSFTGQIPSSLGQLKNLQHLDLRMNALNY 188 (785)
Q Consensus 158 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 188 (785)
++|.+++..|..+..+++|++|++++|.+.+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 5555555555555555555555555555543
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=1.3e-15 Score=142.13 Aligned_cols=133 Identities=21% Similarity=0.143 Sum_probs=91.5
Q ss_pred CCCCCEEeCCCCCCC-CCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcE
Q 003931 28 LRKVRYLDLGGNFLE-TPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEY 106 (785)
Q Consensus 28 l~~L~~L~L~~n~i~-~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~ 106 (785)
.++|++|++++|.++ ...+..|..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|. .+.++++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCE
Confidence 356777777777776 22234466677777777777777655 6667777777777777777744443 3466777777
Q ss_pred EECCCCCCcccCC-ccccCCCCCcEEEcCCCcccccCC---cCCCCCCCCCEEEcccCccc
Q 003931 107 LNLTENQFQGKLS-PNVSKLSNLIDLRLATNKFSGPIP---GDIGSMSNLQLVELFNNSFT 163 (785)
Q Consensus 107 L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~L~~n~~~ 163 (785)
|++++|.+++... ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 7777777775422 567777778888888887775544 36777788888888887766
No 130
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.60 E-value=9.5e-14 Score=148.91 Aligned_cols=323 Identities=10% Similarity=0.074 Sum_probs=208.2
Q ss_pred CCCCccccccCCC-CCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCC---CcccCCccCCCCCCccEEECCCCCCccc
Q 003931 17 LNGAIPFQLSSLR-KVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE---LTLEFPSFILTCRNLTYLDLSLNKLSGL 92 (785)
Q Consensus 17 i~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~Ls~n~i~~~ 92 (785)
++.+...+|.++. .|+.+.+..+ ++.|...||.+|.+|+.+.+..+. ++.+...+|.+|.+|+.+.+..+ ++ .
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-E 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-E
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-e
Confidence 3445566777774 4788887654 777777888888888888877653 66666777888888887777655 33 4
Q ss_pred CChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccC
Q 003931 93 IPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQ 172 (785)
Q Consensus 93 ~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~ 172 (785)
++...|..+.+|+.+.+..+ +......+|..+..|+.+.+..+ ++.....+|.. .+|+.+.+..+-. .....+|..
T Consensus 128 I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~ 203 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSE 203 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTT
T ss_pred ehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhh
Confidence 66677778888888888643 44466677778888888887655 33344455543 5677777765433 244556777
Q ss_pred CCCCCEEEcccCcCcccCCcc-------------ccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccC
Q 003931 173 LKNLQHLDLRMNALNYTIPPE-------------LGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEIS 239 (785)
Q Consensus 173 l~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 239 (785)
+.+++......+......... +.....+..+.+. +.++.....+|.++..|+.+.+.++.. .+.
T Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~--~I~ 280 (394)
T 4gt6_A 204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV--SIG 280 (394)
T ss_dssp CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC--EEC
T ss_pred ccccceecccccccccccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccc--eec
Confidence 777777766554432111110 1112233333332 223334456788888888888876654 466
Q ss_pred ccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCC
Q 003931 240 ANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLT 319 (785)
Q Consensus 240 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~ 319 (785)
..+|.+++.|+.+.+. +.+......+|..|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ++.....+|.+++
T Consensus 281 ~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 6668888889888886 4455566677888889999988754 55566678888899999988654 5555567788899
Q ss_pred CCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcC
Q 003931 320 NLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQL 355 (785)
Q Consensus 320 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 355 (785)
+|+.+++.++.... ..+..+.+|+.+.+..+.+
T Consensus 358 ~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 358 ALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 99999888875432 3466777888877765543
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=4.4e-15 Score=138.55 Aligned_cols=132 Identities=22% Similarity=0.164 Sum_probs=63.8
Q ss_pred CCCcEEECCCCCCc-ccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEE
Q 003931 102 GKLEYLNLTENQFQ-GKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180 (785)
Q Consensus 102 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 180 (785)
++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 33444445555555555555555533 3455555555555555555544444444455555555
Q ss_pred cccCcCcccC-CccccCCcccCeeeccccccccCCc---hhccCCCCCCEEEccCCCCc
Q 003931 181 LRMNALNYTI-PPELGLCTNLSYLALAVNQLSGGLP---LSLSNLSKLNDLGLSDNFLS 235 (785)
Q Consensus 181 l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~L~~n~l~ 235 (785)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 5555554321 1344444444444444444443322 23444444444444444443
No 132
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=2.4e-15 Score=137.20 Aligned_cols=127 Identities=21% Similarity=0.157 Sum_probs=61.1
Q ss_pred CCCCEEeCCCCCCC-CCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEE
Q 003931 29 RKVRYLDLGGNFLE-TPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYL 107 (785)
Q Consensus 29 ~~L~~L~L~~n~i~-~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L 107 (785)
++|+.|++++|.++ ...+..|..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|. .+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEE
Confidence 34444444444444 12223344444455555554444433 3444455555555555555432332 23445555555
Q ss_pred ECCCCCCccc-CCccccCCCCCcEEEcCCCcccccCC---cCCCCCCCCCEEEcc
Q 003931 108 NLTENQFQGK-LSPNVSKLSNLIDLRLATNKFSGPIP---GDIGSMSNLQLVELF 158 (785)
Q Consensus 108 ~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~L~ 158 (785)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555555542 22445555555555555555554433 245555555555554
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=3.3e-14 Score=135.47 Aligned_cols=127 Identities=24% Similarity=0.220 Sum_probs=80.2
Q ss_pred CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCC
Q 003931 32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE 111 (785)
Q Consensus 32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~ 111 (785)
++++++++.++.++...+ ++|++|++++|.++ .+|..|..+++|++|++++|.++ .++...|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence 456666666665543322 35666666666665 33456666666666666666666 34545556666666666666
Q ss_pred CCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccc
Q 003931 112 NQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFT 163 (785)
Q Consensus 112 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~ 163 (785)
|.+++..+..|..+++|++|+|++|+++...+..|..+++|+.|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 6666666666666777777777777776555556667777777777777665
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=3.6e-14 Score=133.55 Aligned_cols=130 Identities=27% Similarity=0.273 Sum_probs=70.7
Q ss_pred CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCC
Q 003931 32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE 111 (785)
Q Consensus 32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~ 111 (785)
+.++++++.++.++... .++|++|++++|.+++..+..|..+++|++|++++|.++ .+|...|..+++|++|++++
T Consensus 10 ~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCC
Confidence 44455555544443221 134555555555555444445555555555555555555 34444445555666666666
Q ss_pred CCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCccccc
Q 003931 112 NQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQ 165 (785)
Q Consensus 112 n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~ 165 (785)
|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 665555555555566666666666666644444455666666666666666543
No 135
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.56 E-value=2.9e-13 Score=145.17 Aligned_cols=322 Identities=12% Similarity=0.099 Sum_probs=223.7
Q ss_pred CCCCCccccCCCC-CCcEEEccCCCCcccCCccCCCCCCccEEECCCCC---CcccCChhhhcCCCCCcEEECCCCCCcc
Q 003931 41 LETPDWSKFSSMP-SLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNK---LSGLIPERLFTNLGKLEYLNLTENQFQG 116 (785)
Q Consensus 41 i~~~~~~~f~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~f~~l~~L~~L~Ls~n~i~~ 116 (785)
++.|...||.++. .|+.+.+..+ ++.+...+|.+|.+|+.+.+..+. ++ .+....|.++.+|+.+.+..+ ++.
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cce
Confidence 5667788898885 5999999764 777888899999999999987653 55 577888899999998887654 565
Q ss_pred cCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcccCCccccC
Q 003931 117 KLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNYTIPPELGL 196 (785)
Q Consensus 117 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 196 (785)
....+|..+.+|+.+.+..+. .......|..+.+|+.+.+..+ +......+|.. .+|+.+.+..+.. ......|..
T Consensus 128 I~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~ 203 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSE 203 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTT
T ss_pred ehhhhhhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhh
Confidence 777888999999999997553 3356677888999999998765 44344555654 5788888876543 355567778
Q ss_pred CcccCeeeccccccccCCchh-------------ccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccC
Q 003931 197 CTNLSYLALAVNQLSGGLPLS-------------LSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNI 263 (785)
Q Consensus 197 l~~L~~L~l~~n~i~~~~~~~-------------l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 263 (785)
+..++......+......... +.....+..+.+... +. .+...+|.++..|+.+.+.++.. ...
T Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~-~i~~~aF~~c~~L~~i~lp~~~~-~I~ 280 (394)
T 4gt6_A 204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VA-RIETHAFDSCAYLASVKMPDSVV-SIG 280 (394)
T ss_dssp CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EE-EECTTTTTTCSSCCEEECCTTCC-EEC
T ss_pred ccccceecccccccccccceeecccccccccccccccccccceEEcCCc-ce-EcccceeeecccccEEecccccc-eec
Confidence 888887766554433211111 112233444444322 22 44555688889999999876543 355
Q ss_pred CccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCC
Q 003931 264 PPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMA 343 (785)
Q Consensus 264 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 343 (785)
..+|.+++.|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.....+|.++.+|+.+.+..+ ++.....+|.+|.
T Consensus 281 ~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 6678889999999996 4565566678899999999999765 55556678899999999999755 5545567788999
Q ss_pred CCCEEEccCCcCccccCccccccCCCcEEEecCcc
Q 003931 344 SLVAFDVNTNQLHGELPENISRLVKLNKFSVFTNN 378 (785)
Q Consensus 344 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~n~ 378 (785)
+|+.+++.++.... ..+..+..|+.+.+..+.
T Consensus 358 ~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 358 ALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp TCCEEEESSCHHHH---HTCBCCCCC---------
T ss_pred CCCEEEECCceeeh---hhhhccCCCCEEEeCCCC
Confidence 99999998875432 345667777777765553
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=4.5e-14 Score=132.92 Aligned_cols=128 Identities=27% Similarity=0.287 Sum_probs=65.8
Q ss_pred cEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCC
Q 003931 56 THLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLAT 135 (785)
Q Consensus 56 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 135 (785)
+.++++++.++.... .+ .++|++|++++|.++ .++...|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 10 ~~l~~~~~~l~~~p~-~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPT-GI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCSSCCT-TC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCccCCC-CC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 445555555543321 11 135555555555555 34444445555555555555555544444455555555555555
Q ss_pred CcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCc
Q 003931 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN 187 (785)
Q Consensus 136 n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 187 (785)
|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 5555444444555555555555555555444444455555555555555554
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.55 E-value=7.1e-15 Score=134.05 Aligned_cols=126 Identities=21% Similarity=0.194 Sum_probs=60.9
Q ss_pred CCCcEEECCCCCCc-ccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEE
Q 003931 102 GKLEYLNLTENQFQ-GKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLD 180 (785)
Q Consensus 102 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 180 (785)
++|++|++++|.++ +..|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 44555555555554 34444444555555555555555433 3445555555555555555544444444455555555
Q ss_pred cccCcCccc-CCccccCCcccCeeeccccccccCCc---hhccCCCCCCEEEc
Q 003931 181 LRMNALNYT-IPPELGLCTNLSYLALAVNQLSGGLP---LSLSNLSKLNDLGL 229 (785)
Q Consensus 181 l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~---~~l~~l~~L~~L~L 229 (785)
+++|.+++. .+..++.+++|++|++++|.+++..+ ..+..+++|++|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 555555432 12344444455555555554443333 23444444444444
No 138
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=5.4e-14 Score=134.01 Aligned_cols=127 Identities=24% Similarity=0.360 Sum_probs=89.2
Q ss_pred cEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCCCcEEEcCC
Q 003931 56 THLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSNLIDLRLAT 135 (785)
Q Consensus 56 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 135 (785)
++++++++.++.+ |..+. ++|++|++++|.++ .+|. .|.++++|++|+|++|.+++..+..|.++++|++|+|++
T Consensus 13 ~~l~~~~~~l~~i-p~~~~--~~l~~L~L~~n~i~-~ip~-~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGIP--RDVTELYLDGNQFT-LVPK-ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSC-CSCCC--TTCCEEECCSSCCC-SCCG-GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcC-CCCCC--CCCCEEECCCCcCc-hhHH-HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 4677777776643 33332 46777777777776 5663 457777777777777777776667777777777777777
Q ss_pred CcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCc
Q 003931 136 NKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALN 187 (785)
Q Consensus 136 n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 187 (785)
|++++..+..|.++++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7777666667777777777777777777665556777777777777777665
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=2.7e-14 Score=134.25 Aligned_cols=133 Identities=20% Similarity=0.197 Sum_probs=107.1
Q ss_pred cccCCCCCCEEeCCCCCCCCCCccccCCCC-CCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCC
Q 003931 24 QLSSLRKVRYLDLGGNFLETPDWSKFSSMP-SLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLG 102 (785)
Q Consensus 24 ~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~ 102 (785)
.+.++.+|++|++++|.++.++ .+..+. +|++|++++|.+++. ..|..+++|++|++++|.++ .+|..+|..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence 4677888899999998888763 344444 899999999988876 67888889999999999988 56767778899
Q ss_pred CCcEEECCCCCCcccCCc--cccCCCCCcEEEcCCCcccccCCcC----CCCCCCCCEEEcccCccc
Q 003931 103 KLEYLNLTENQFQGKLSP--NVSKLSNLIDLRLATNKFSGPIPGD----IGSMSNLQLVELFNNSFT 163 (785)
Q Consensus 103 ~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~L~~n~~~ 163 (785)
+|++|++++|.+.. .+. .+..+++|+.|++++|.++. .|.. +..+++|++|++++|...
T Consensus 89 ~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 99999999999864 443 78888999999999999884 4543 788899999999988765
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=4.5e-14 Score=132.70 Aligned_cols=134 Identities=17% Similarity=0.209 Sum_probs=97.5
Q ss_pred ccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCC
Q 003931 48 KFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSN 127 (785)
Q Consensus 48 ~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 127 (785)
.|..+.+|++|++++|.++.. +......++|++|++++|.+++ ++ .|..+++|++|++++|.+++..+..|..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~-~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-LD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-EC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCc-cc--ccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 466777888888888888754 4333333488888888888874 32 3577888888888888888665555678888
Q ss_pred CcEEEcCCCcccccCCc--CCCCCCCCCEEEcccCcccccCCc----cccCCCCCCEEEcccCcCc
Q 003931 128 LIDLRLATNKFSGPIPG--DIGSMSNLQLVELFNNSFTGQIPS----SLGQLKNLQHLDLRMNALN 187 (785)
Q Consensus 128 L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~L~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l~ 187 (785)
|++|++++|++.. +|. .+..+++|++|++++|.+.. .|. .+..+++|++|+++.|...
T Consensus 90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 8888888888863 444 67778888888888888874 444 3777888888888887654
No 141
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.41 E-value=2.8e-11 Score=129.09 Aligned_cols=304 Identities=11% Similarity=0.044 Sum_probs=205.1
Q ss_pred ccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCC
Q 003931 25 LSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKL 104 (785)
Q Consensus 25 ~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L 104 (785)
+....+|+.+.+.. .++.|...+|.+|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++ .+....|... +|
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DL 115 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CC
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-Cc
Confidence 45556788887765 377777788888888888888654 666777778777 5777777654 33 5666777654 68
Q ss_pred cEEECCCCCCcccCCccccCCCCCcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccc------------cCCccccC
Q 003931 105 EYLNLTENQFQGKLSPNVSKLSNLIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTG------------QIPSSLGQ 172 (785)
Q Consensus 105 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~------------~~~~~l~~ 172 (785)
+.+.+..+ +......+|.++ ++..+.+..+ ++......|..+.+++.+....+.... .....+..
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred ccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 88888764 333455566655 4566555443 333445567777777777766543221 12223445
Q ss_pred CCCCCEEEcccCcCcccCCccccCCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEE
Q 003931 173 LKNLQHLDLRMNALNYTIPPELGLCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESL 252 (785)
Q Consensus 173 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 252 (785)
...+..+.+..... ......+..+..|+.+.+..+ +......++..+..|+.+.+..+ ++ .+...+|.++.+|+.+
T Consensus 193 ~~~~~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i 268 (379)
T 4h09_A 193 AKTGTEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTL 268 (379)
T ss_dssp TCCCSEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEE
T ss_pred ccccccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhccc
Confidence 55666666554332 244556677788888877654 44455667788888888888766 44 5666668888889988
Q ss_pred EeecCcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEccccccc
Q 003931 253 QIQNNSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLS 332 (785)
Q Consensus 253 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 332 (785)
.+..+ +.......|..|++|+.+.+.++.++.+...+|.++.+|+.++|..+ ++.....+|.++++|+.+.+..+ ++
T Consensus 269 ~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~ 345 (379)
T 4h09_A 269 NFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-IT 345 (379)
T ss_dssp EECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CC
T ss_pred ccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cC
Confidence 88654 55455567888899999999888887677788888999999998754 55555677888999998888654 44
Q ss_pred CCCCCCCCCCCC
Q 003931 333 GTIPPEIGSMAS 344 (785)
Q Consensus 333 ~~~p~~~~~l~~ 344 (785)
.+...+|.++..
T Consensus 346 ~I~~~aF~~c~~ 357 (379)
T 4h09_A 346 LIESGAFEGSSI 357 (379)
T ss_dssp EECTTTTTTSSC
T ss_pred EEchhHhhCCCC
Confidence 344556666643
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=4.9e-15 Score=142.31 Aligned_cols=132 Identities=27% Similarity=0.281 Sum_probs=77.9
Q ss_pred ccCCCCCCcEEEccCCeeeeecccchhcccccceeccccceeeeccCcchhccccCCeeecccCccccCCCcccccCCCC
Q 003931 459 AFGVHPRLDFIRLSGNQFVGEISPDWGECRNLSNLQLDRNRISGGIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLVKL 538 (785)
Q Consensus 459 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 538 (785)
.+..+++|+.|++++|.+.+ +| .+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 45555566666666666654 33 5666666666666666665 345555556666666666666664 23 45666666
Q ss_pred CeecccCCcccCcCC-cccccCCCCCeEecCCCcCccCCCcc----------ccccCCCcEEeCCCCcCc
Q 003931 539 FNLNLSNNHLTGEIP-KSISNLTELAYLDLSNNKLTGDVPQE----------LGRFDKLLSLNLSHNDLS 597 (785)
Q Consensus 539 ~~L~ls~n~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~~p~~----------l~~l~~L~~L~ls~N~l~ 597 (785)
++|++++|++++..+ ..+..+++|++|++++|++.+.+|.. +..+++|+.|| +|+++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 666666666653221 34566666666666666665544432 55666666665 44443
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=5.5e-15 Score=141.92 Aligned_cols=156 Identities=22% Similarity=0.288 Sum_probs=91.5
Q ss_pred hhcccccceeccccceeeeccCc------chhccccCCeeecccCccccCCCcccccCCCCCeecccCCcccCcCCcccc
Q 003931 484 WGECRNLSNLQLDRNRISGGIPA------ELGNLTRLGVLSLDSNELTGKIPTDLGKLVKLFNLNLSNNHLTGEIPKSIS 557 (785)
Q Consensus 484 ~~~l~~L~~L~L~~n~i~~~~~~------~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 557 (785)
|.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 45556666666666666665554 55555666666666665554 33 5555555555555555555 3444444
Q ss_pred cCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCcccCCcccchhhhhhheeecccccCCCCCC-cccccCCCCc
Q 003931 558 NLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLSGEIPSNLGNLFVLQYMLDLSSNSLSGTIP-QELGKLTSLE 636 (785)
Q Consensus 558 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~l~~l~~~l~ls~n~l~~~~~-~~~~~l~~L~ 636 (785)
.+++|++|++++|++++ +| .+..+++|+. +++++|.+++..+ ..+..+++|+
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~-------------------------L~l~~N~i~~~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRV-------------------------LYMSNNKITNWGEIDKLAALDKLE 143 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSE-------------------------EEESEEECCCHHHHHHHTTTTTCS
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCE-------------------------EECCCCcCCchhHHHHHhcCCCCC
Confidence 44555555555555543 22 3444444444 4555555443222 3566788889
Q ss_pred eEeccCCceeeecCCc----------ccccccceeeecCCCchhh
Q 003931 637 ILNLSRNQLSGRIPAS----------LSSMISLRSVDFSDNELTE 671 (785)
Q Consensus 637 ~L~l~~n~l~~~~~~~----------~~~l~~l~~l~l~~n~l~e 671 (785)
+|++++|.+.+..|.. +..+++|+.+| ++++++
T Consensus 144 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 144 DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 9999999887766553 66778888876 666653
No 144
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.38 E-value=5.4e-11 Score=126.83 Aligned_cols=303 Identities=12% Similarity=0.066 Sum_probs=170.0
Q ss_pred ccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccccCCCC
Q 003931 48 KFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNVSKLSN 127 (785)
Q Consensus 48 ~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 127 (785)
.|....+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++ .|....|.++ +|+.+.+..+ ++.+...+|..+ +
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-D 114 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-C
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-C
Confidence 355556677777654 355566667777777777777654 44 5666666666 4666665533 444555566554 5
Q ss_pred CcEEEcCCCcccccCCcCCCCCCCCCEEEcccCcccccCCccccCCCCCCEEEcccCcCcc------------cCCcccc
Q 003931 128 LIDLRLATNKFSGPIPGDIGSMSNLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNALNY------------TIPPELG 195 (785)
Q Consensus 128 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~~~~~ 195 (785)
|+.+.+..+- +......|.++ +++.+.+..+ ++.....+|..+.+++...+..+.... .....+.
T Consensus 115 L~~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 115 LDDFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp CSEEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred cccccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 7777776542 22333444443 4555554433 333444556666667666665443221 1112233
Q ss_pred CCcccCeeeccccccccCCchhccCCCCCCEEEccCCCCccccCccccCCCCCCCEEEeecCcCcccCCccCcCCCCCcE
Q 003931 196 LCTNLSYLALAVNQLSGGLPLSLSNLSKLNDLGLSDNFLSGEISANLIGNWTELESLQIQNNSFMGNIPPEIGLLTKLQY 275 (785)
Q Consensus 196 ~l~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 275 (785)
.+..+..+.+.... .......+..+.+|+.+.+..+ +. .+....+.++..|+.+.+..+ ++.....+|..+..|+.
T Consensus 192 ~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 192 AAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp TTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccccccccce-eEEeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 33444444443322 2233445556667777766554 22 444455666777777777654 44445556667777777
Q ss_pred EECcCccccccCChhccCCCCCCEEECcCCcccccCCccCcCCCCCCEEEcccccccCCCCCCCCCCCCCCEEEccCCcC
Q 003931 276 LFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLSGTIPPTLWNLTNLLSLQLFSNNLSGTIPPEIGSMASLVAFDVNTNQL 355 (785)
Q Consensus 276 L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l~~n~l 355 (785)
+.+..+ +......+|.++++|+.+.+.++.++.....+|.++.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ +
T Consensus 268 i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v 344 (379)
T 4h09_A 268 LNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-I 344 (379)
T ss_dssp EEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-C
T ss_pred cccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-c
Confidence 777543 44344556677777777777766666555666777777777777543 44344556677777777666443 3
Q ss_pred ccccCcccccc
Q 003931 356 HGELPENISRL 366 (785)
Q Consensus 356 ~~~~~~~~~~l 366 (785)
+..-..+|.++
T Consensus 345 ~~I~~~aF~~c 355 (379)
T 4h09_A 345 TLIESGAFEGS 355 (379)
T ss_dssp CEECTTTTTTS
T ss_pred CEEchhHhhCC
Confidence 33333344443
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=4.6e-12 Score=117.88 Aligned_cols=104 Identities=27% Similarity=0.342 Sum_probs=53.8
Q ss_pred CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCC
Q 003931 32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE 111 (785)
Q Consensus 32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~ 111 (785)
+.+++++|.++.++... .++|++|++++|.+++..+..|..+++|++|++++|+++ .+|...|.++++|++|+|++
T Consensus 12 ~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCC
Confidence 44555555554443221 144555555555555555555555555555555555555 34444445555555555555
Q ss_pred CCCcccCCccccCCCCCcEEEcCCCccc
Q 003931 112 NQFQGKLSPNVSKLSNLIDLRLATNKFS 139 (785)
Q Consensus 112 n~i~~~~~~~~~~l~~L~~L~L~~n~~~ 139 (785)
|++++..+..|..+++|++|+|++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555444445555555555555555554
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=4.4e-12 Score=118.01 Aligned_cols=104 Identities=25% Similarity=0.254 Sum_probs=55.9
Q ss_pred cEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCC
Q 003931 8 QYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLN 87 (785)
Q Consensus 8 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n 87 (785)
+.+++++|.++.++. .+ .++|++|+|++|.|+.+.+..|.++++|++|+|++|.++++.+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 455555555554322 22 245555555555555555555555555555555555555555555555555555555555
Q ss_pred CCcccCChhhhcCCCCCcEEECCCCCCc
Q 003931 88 KLSGLIPERLFTNLGKLEYLNLTENQFQ 115 (785)
Q Consensus 88 ~i~~~~~~~~f~~l~~L~~L~Ls~n~i~ 115 (785)
.++ .+|...|..+++|++|+|++|.+.
T Consensus 89 ~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLK-SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 555 344444455555555555555554
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=7.8e-12 Score=116.65 Aligned_cols=104 Identities=23% Similarity=0.240 Sum_probs=51.8
Q ss_pred CEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCCCCcccCChhhhcCCCCCcEEECCC
Q 003931 32 RYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTE 111 (785)
Q Consensus 32 ~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~ 111 (785)
+.+++++|.++.++...+ ++|++|++++|.+++..|..|.++++|++|+|++|+++ .+|..+|.++++|++|+|++
T Consensus 15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCC
Confidence 455555555555443211 45555555555555555555555555555555555555 34444445555555555555
Q ss_pred CCCcccCCccccCCCCCcEEEcCCCccc
Q 003931 112 NQFQGKLSPNVSKLSNLIDLRLATNKFS 139 (785)
Q Consensus 112 n~i~~~~~~~~~~l~~L~~L~L~~n~~~ 139 (785)
|++++..+..|..+++|++|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 5555433333444444444444444443
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=9.7e-12 Score=116.02 Aligned_cols=107 Identities=23% Similarity=0.234 Sum_probs=96.2
Q ss_pred CcEEEccCCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCC
Q 003931 7 LQYLSVYDNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL 86 (785)
Q Consensus 7 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 86 (785)
-+.+++++|.++.++. .+. ++|++|++++|.++.+.+..|.++++|++|+|++|.++++.+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~-~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPA-GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCS-CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCC-CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4789999999985544 343 8999999999999999999999999999999999999998888899999999999999
Q ss_pred CCCcccCChhhhcCCCCCcEEECCCCCCccc
Q 003931 87 NKLSGLIPERLFTNLGKLEYLNLTENQFQGK 117 (785)
Q Consensus 87 n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~ 117 (785)
|.++ .+|...|..+++|++|+|++|.+...
T Consensus 91 N~l~-~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 91 NHLK-SIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SCCC-CCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred Cccc-eeCHHHhccccCCCEEEeCCCCcccc
Confidence 9999 67877789999999999999998843
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=2.6e-13 Score=143.16 Aligned_cols=135 Identities=21% Similarity=0.189 Sum_probs=71.2
Q ss_pred CCCcEEECCCCCCcccCCccc-cCCCCCcEEEcCCCcccccCCcCC-----CCCCCCCEEEcccCccccc----CCcccc
Q 003931 102 GKLEYLNLTENQFQGKLSPNV-SKLSNLIDLRLATNKFSGPIPGDI-----GSMSNLQLVELFNNSFTGQ----IPSSLG 171 (785)
Q Consensus 102 ~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~l-----~~l~~L~~L~L~~n~~~~~----~~~~l~ 171 (785)
++|++|+|++|.++......+ ..+++|+.|+|++|.++......+ ...++|++|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 455555555555543222222 123455555555555543222222 2345566666666665431 233345
Q ss_pred CCCCCCEEEcccCcCccc----CCccccCCcccCeeeccccccccC----CchhccCCCCCCEEEccCCCCcc
Q 003931 172 QLKNLQHLDLRMNALNYT----IPPELGLCTNLSYLALAVNQLSGG----LPLSLSNLSKLNDLGLSDNFLSG 236 (785)
Q Consensus 172 ~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~ 236 (785)
..++|++|++++|.++.. ++..+...++|++|++++|.+++. +...+...++|++|+|++|.++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 566666666666666532 233445556677777777766542 23334455777777777777763
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=5.7e-13 Score=140.53 Aligned_cols=159 Identities=17% Similarity=0.212 Sum_probs=71.4
Q ss_pred CCccEEECCCCCCcccCChhhhcCCCCCcEEECCCCCCcccCCccc-----cCCCCCcEEEcCCCccccc----CCcCCC
Q 003931 77 RNLTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQFQGKLSPNV-----SKLSNLIDLRLATNKFSGP----IPGDIG 147 (785)
Q Consensus 77 ~~L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~i~~~~~~~~-----~~l~~L~~L~L~~n~~~~~----~~~~l~ 147 (785)
++|++|+|++|.++......++..+++|++|+|++|.++......+ ...++|++|+|++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3455555555544422222222334445555555555543222222 2234555555555555431 122234
Q ss_pred CCCCCCEEEcccCccccc----CCccccCCCCCCEEEcccCcCccc----CCccccCCcccCeeeccccccccCCchhcc
Q 003931 148 SMSNLQLVELFNNSFTGQ----IPSSLGQLKNLQHLDLRMNALNYT----IPPELGLCTNLSYLALAVNQLSGGLPLSLS 219 (785)
Q Consensus 148 ~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~l~ 219 (785)
.+++|++|+|++|.+... ++..+...++|++|++++|.++.. ++..+...++|++|++++|.+++.....+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 455555566655555432 233444555666666666666532 222333455666666666666544333332
Q ss_pred CC---C--CCCEEE--ccCCCCc
Q 003931 220 NL---S--KLNDLG--LSDNFLS 235 (785)
Q Consensus 220 ~l---~--~L~~L~--L~~n~l~ 235 (785)
.+ . .|+.+. +..+.+.
T Consensus 261 ~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 261 DLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HCC------CEEECCCC----CH
T ss_pred HHhcCCCccchhhHhhhcCCccC
Confidence 22 1 155555 5555443
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=4.4e-10 Score=118.17 Aligned_cols=65 Identities=22% Similarity=0.193 Sum_probs=26.3
Q ss_pred CCCCCCCEEEeec-CcCcccCCccCcCCCCCcEEECcCccccccCChhccCCCCCCEEECcCCccc
Q 003931 244 GNWTELESLQIQN-NSFMGNIPPEIGLLTKLQYLFLYRNNFSGPIPSEIEKLTSLENLDLSGNQLS 308 (785)
Q Consensus 244 ~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~n~l~ 308 (785)
..+++|+.|+|++ |.+.+..+..|+.+++|++|+|++|++++..|..|.++++|+.|+|++|+++
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 3333344444432 3333333333444444444444444444433334444444444444444444
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=3.8e-10 Score=118.70 Aligned_cols=102 Identities=20% Similarity=0.265 Sum_probs=50.8
Q ss_pred EEccCC-CCCCCccccccCCCCCCEEeCCC-CCCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCCC
Q 003931 10 LSVYDN-NLNGAIPFQLSSLRKVRYLDLGG-NFLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSLN 87 (785)
Q Consensus 10 L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n 87 (785)
++.+++ .++.+ |. +..+++|++|+|++ |.++.+.+.+|.++++|++|+|++|.++++.|..|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455554 45432 22 55555555555553 5555555555555555555555555555555555555555555555555
Q ss_pred CCcccCChhhhcCCCCCcEEECCCCCCc
Q 003931 88 KLSGLIPERLFTNLGKLEYLNLTENQFQ 115 (785)
Q Consensus 88 ~i~~~~~~~~f~~l~~L~~L~Ls~n~i~ 115 (785)
+++ .+|..+|..++ |++|+|.+|.+.
T Consensus 91 ~l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 554 34444433333 444444444443
No 153
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=99.03 E-value=2.8e-11 Score=123.47 Aligned_cols=82 Identities=23% Similarity=0.398 Sum_probs=59.2
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|+-.....+.|+||||||||+.||+| |+.|.. ++..+.... .+..+. ++-..+.+++..|
T Consensus 216 PE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~~~--------~~~~p~----~~~~~~~~li~~C 283 (308)
T 4gt4_A 216 PEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQ--------VLPCPD----DCPAWVYALMIEC 283 (308)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHTTC--------CCCCCT----TCCHHHHHHHHHH
T ss_pred HHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC--------CCCCcc----cchHHHHHHHHHH
Confidence 577778889999999999999999999 898843 222221111 111111 1223356788999
Q ss_pred CCCCCCCCCChHHHHHHHHhc
Q 003931 743 TSTTPDTRPSMRFVAQELSAK 763 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~ 763 (785)
++.+|++||+|.||+++|+..
T Consensus 284 ~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 284 WNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp TCSSGGGSCCHHHHHHHHHTS
T ss_pred cCCChhHCcCHHHHHHHHHhc
Confidence 999999999999999999864
No 154
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=99.02 E-value=3.4e-11 Score=122.29 Aligned_cols=88 Identities=16% Similarity=0.238 Sum_probs=57.8
Q ss_pred cccccccceeeeehhhhhhhhCCCCCchh---hhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGELI---TSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS 752 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~ 752 (785)
..++.|+||||||||+.||+||+.|.+-. ..+.. .......+|.+...... +-..+.+++..|++.+|++||+
T Consensus 212 ~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~-~~~~~~~~p~~~~~~~~---~~~~l~~li~~cl~~dP~~RPs 287 (307)
T 3omv_A 212 NPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIF-MVGRGYASPDLSKLYKN---CPKAMKRLVADCVKKVKEERPL 287 (307)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHH-HHHTTCCCCCSTTSCTT---SCHHHHHHHHHHTCSSSTTSCC
T ss_pred CCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHH-HHhcCCCCCCccccccc---chHHHHHHHHHHcCCCHhHCcC
Confidence 45789999999999999999999995310 00000 00011222322211111 1123456788999999999999
Q ss_pred hHHHHHHHHhccccc
Q 003931 753 MRFVAQELSAKTQAY 767 (785)
Q Consensus 753 m~~vv~~l~~~~~~~ 767 (785)
|.||++.|+.++.+.
T Consensus 288 ~~ei~~~Le~l~~~l 302 (307)
T 3omv_A 288 FPQILSSIELLQHSL 302 (307)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999886654
No 155
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=99.01 E-value=4.5e-11 Score=122.34 Aligned_cols=89 Identities=17% Similarity=0.224 Sum_probs=60.1
Q ss_pred ccccccceeeeehhhhhhhhCCCCCchh--------hhccCccc--------ccccccCCCCCCCchhHHHHHHHHHHHh
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGELI--------TSLSGELF--------LKDVLDQRLPPPTGQLAEAVVLTINVAL 740 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~~~--------~~~~~~~~--------~~~~~d~~l~~~~~~~~~~~~~~~~ial 740 (785)
..+.|+||||||||+.||+||+.|.... .+...... ..+.++|.+... ....++...+.+++.
T Consensus 194 ~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~p~~-~~~~~~~~~l~~li~ 272 (303)
T 3hmm_A 194 ESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNR-WQSCEALRVMAKIMR 272 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGG-GGSSHHHHHHHHHHH
T ss_pred ccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcccCCCCCCcc-ccchHHHHHHHHHHH
Confidence 5788999999999999999998875311 11111000 112233333221 112244556778999
Q ss_pred hcCCCCCCCCCChHHHHHHHHhcccc
Q 003931 741 ACTSTTPDTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 741 ~C~~~~p~~Rp~m~~vv~~l~~~~~~ 766 (785)
.|++.+|++||||.||+++|+++.+.
T Consensus 273 ~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 273 ECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp TTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHcccCHhHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999988653
No 156
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=98.98 E-value=6.3e-11 Score=122.17 Aligned_cols=85 Identities=28% Similarity=0.409 Sum_probs=60.8
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|+......+.|+|||||||++.||+| |+.|.. ++..+... .++..+. . +-..+.+++..|
T Consensus 229 PE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g--------~~~~~p~-~---~~~~~~~li~~c 296 (329)
T 4aoj_A 229 PESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQG--------RELERPR-A---CPPEVYAIMRGC 296 (329)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHT--------CCCCCCT-T---CCHHHHHHHHHH
T ss_pred hhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHcC--------CCCCCcc-c---ccHHHHHHHHHH
Confidence 477777889999999999999999999 899953 11111111 0111111 1 112345778899
Q ss_pred CCCCCCCCCChHHHHHHHHhcccc
Q 003931 743 TSTTPDTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~~~ 766 (785)
++.+|++||+|.||+++|+.+.+.
T Consensus 297 l~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 297 WQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp CCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred cCcChhHCcCHHHHHHHHHHHhhC
Confidence 999999999999999999998664
No 157
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=98.98 E-value=5.9e-11 Score=120.54 Aligned_cols=86 Identities=23% Similarity=0.353 Sum_probs=61.3
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|+-.....+.|+|||||||++.||+| |+.|.. +...+.... .+..+. . +-..+.+++..|
T Consensus 199 PE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~--------~~~~p~-~---~~~~~~~li~~c 266 (299)
T 4asz_A 199 PESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGR--------VLQRPR-T---CPQEVYELMLGC 266 (299)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTC--------CCCCCT-T---CCHHHHHHHHHH
T ss_pred HHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCC--------CCCCCc-c---chHHHHHHHHHH
Confidence 477777889999999999999999999 899953 111111110 111111 1 112355778899
Q ss_pred CCCCCCCCCChHHHHHHHHhccccc
Q 003931 743 TSTTPDTRPSMRFVAQELSAKTQAY 767 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~~~~ 767 (785)
++.+|++||+|.||+++|+++.+..
T Consensus 267 l~~dP~~RPs~~~i~~~L~~~~~~~ 291 (299)
T 4asz_A 267 WQREPHMRKNIKGIHTLLQNLAKAS 291 (299)
T ss_dssp TCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred cCCChhHCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999999887653
No 158
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=98.83 E-value=3.7e-10 Score=117.38 Aligned_cols=90 Identities=24% Similarity=0.308 Sum_probs=59.7
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccc-c-CCCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVL-D-QRLPPPTGQLAEAVVLTINVALACTSTT 746 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~-d-~~l~~~~~~~~~~~~~~~~ial~C~~~~ 746 (785)
+|+-.....+.|+|||||||++.||+| |+.|..-.. ....+...+ + .++..+. .. -..+.++...|++.+
T Consensus 256 PE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~---~~~~~~~~i~~g~~~~~p~-~~---~~~~~~li~~c~~~d 328 (353)
T 4ase_A 256 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK---IDEEFCRRLKEGTRMRAPD-YT---TPEMYQTMLDCWHGE 328 (353)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC---CSHHHHHHHHHTCCCCCCT-TC---CHHHHHHHHHHTCSS
T ss_pred HHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCC---HHHHHHHHHHcCCCCCCCc-cC---CHHHHHHHHHHcCcC
Confidence 477777889999999999999999999 899953100 000000111 1 1111111 11 123456778999999
Q ss_pred CCCCCChHHHHHHHHhcccc
Q 003931 747 PDTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 747 p~~Rp~m~~vv~~l~~~~~~ 766 (785)
|++||+|.||++.|+++-+.
T Consensus 329 P~~RPt~~eil~~L~~llq~ 348 (353)
T 4ase_A 329 PSQRPTFSELVEHLGNLLQA 348 (353)
T ss_dssp GGGSCCHHHHHHHHHHHHHH
T ss_pred hhHCcCHHHHHHHHHHHHHH
Confidence 99999999999999887543
No 159
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=98.80 E-value=2.2e-09 Score=111.69 Aligned_cols=94 Identities=33% Similarity=0.469 Sum_probs=70.4
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc-----------hhhhccC---cccccccccCCCCCCCchhHHHHHHH
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE-----------LITSLSG---ELFLKDVLDQRLPPPTGQLAEAVVLT 735 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~-----------~~~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~ 735 (785)
+|+-.....+.++|||||||++.|++||+.|.+ ...|+.. .....++.++.+... ...++...+
T Consensus 204 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l 281 (326)
T 3uim_A 204 PEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGN--YKDEEVEQL 281 (326)
T ss_dssp HHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTSSCCSTTSSCTTCTTS--CCHHHHHHH
T ss_pred HHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhhchhhhhhcChhhccc--cCHHHHHHH
Confidence 455556678899999999999999999999975 2333332 233455666665433 223456678
Q ss_pred HHHHhhcCCCCCCCCCChHHHHHHHHhccc
Q 003931 736 INVALACTSTTPDTRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 736 ~~ial~C~~~~p~~Rp~m~~vv~~l~~~~~ 765 (785)
.+++..|.+.+|++||+|.||+++|++...
T Consensus 282 ~~li~~cl~~dP~~Rps~~ell~~L~~~~~ 311 (326)
T 3uim_A 282 IQVALLCTQSSPMERPKMSEVVRMLEGDGL 311 (326)
T ss_dssp HHHHHHHTCSCGGGSCCHHHHHHHHHTSSC
T ss_pred HHHHHHHhCcCCccCCCHHHHHHHhcCcch
Confidence 889999999999999999999999987544
No 160
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.73 E-value=3.3e-09 Score=110.66 Aligned_cols=84 Identities=14% Similarity=0.210 Sum_probs=47.2
Q ss_pred CCCCCCEEEeecCcCcccCCccC---cCCCCCcEEECcCccccccC----ChhccCCCCCCEEECcCCcccccCCccCcC
Q 003931 245 NWTELESLQIQNNSFMGNIPPEI---GLLTKLQYLFLYRNNFSGPI----PSEIEKLTSLENLDLSGNQLSGTIPPTLWN 317 (785)
Q Consensus 245 ~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~ 317 (785)
.+++|++|++.+|.+.+..+..+ ..+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.+++..-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 35666666666666553222221 24567777777777765532 223345677788888777776443222322
Q ss_pred -CCCCCEEEccccc
Q 003931 318 -LTNLLSLQLFSNN 330 (785)
Q Consensus 318 -l~~L~~L~L~~n~ 330 (785)
+ ...++++.++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3456776665
No 161
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.72 E-value=4.2e-09 Score=109.82 Aligned_cols=84 Identities=19% Similarity=0.253 Sum_probs=52.3
Q ss_pred CCCCCcEEECcCccccccCChhcc---CCCCCCEEECcCCccccc----CCccCcCCCCCCEEEcccccccCCCCCCCCC
Q 003931 269 LLTKLQYLFLYRNNFSGPIPSEIE---KLTSLENLDLSGNQLSGT----IPPTLWNLTNLLSLQLFSNNLSGTIPPEIGS 341 (785)
Q Consensus 269 ~l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 341 (785)
.+++|++|+|.+|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 467888888888877643333332 467888888888887753 2333345678888888888765322111221
Q ss_pred -CCCCCEEEccCCc
Q 003931 342 -MASLVAFDVNTNQ 354 (785)
Q Consensus 342 -l~~L~~L~l~~n~ 354 (785)
+ ...++++.++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 1 3557777665
No 162
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=98.70 E-value=6.2e-09 Score=108.05 Aligned_cols=94 Identities=29% Similarity=0.354 Sum_probs=69.2
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc---------hhhhccC---cccccccccCCCCCCCchhHHHHHHHHH
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE---------LITSLSG---ELFLKDVLDQRLPPPTGQLAEAVVLTIN 737 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~---------~~~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~~~ 737 (785)
+|.......+.++|||||||++.|++||+.|.. ...|... .....+++|+.+.... ..+....+.+
T Consensus 210 PE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 287 (321)
T 2qkw_B 210 PEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKI--RPESLRKFGD 287 (321)
T ss_dssp HHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCSSSSSSCTTCS--CHHHHHHHHH
T ss_pred HHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHHhcChhhcccc--CHHHHHHHHH
Confidence 465556778999999999999999999999853 2233221 2334566676654321 2344556778
Q ss_pred HHhhcCCCCCCCCCChHHHHHHHHhccc
Q 003931 738 VALACTSTTPDTRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 738 ial~C~~~~p~~Rp~m~~vv~~l~~~~~ 765 (785)
++..|.+.+|++||+|.||++.|+.+..
T Consensus 288 li~~~l~~dP~~Rps~~ell~~L~~~l~ 315 (321)
T 2qkw_B 288 TAVKCLALSSEDRPSMGDVLWKLEYALR 315 (321)
T ss_dssp HHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence 8999999999999999999999987643
No 163
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=98.58 E-value=2e-08 Score=103.35 Aligned_cols=86 Identities=28% Similarity=0.432 Sum_probs=61.5
Q ss_pred ccccccceeeeehhhhhhhhCCCCCch-------hhhcc---C-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGEL-------ITSLS---G-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTST 745 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~~-------~~~~~---~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~ 745 (785)
..+.++||||||++++|++||+.|.+- ..+.. . .....+.+++.+... .......+.++...|++.
T Consensus 210 ~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~li~~cl~~ 286 (307)
T 2nru_A 210 EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKEEIEDEEKTIEDYIDKKMNDA---DSTSVEAMYSVASQCLHE 286 (307)
T ss_dssp EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHHHHHTTSCCHHHHSCSSCSCC---CHHHHHHHHHHHHHHTCS
T ss_pred CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHHHhhhhhhhhhhhcccccccc---chHHHHHHHHHHHHHcCC
Confidence 478899999999999999999999641 11111 1 122344555555332 223344567889999999
Q ss_pred CCCCCCChHHHHHHHHhccc
Q 003931 746 TPDTRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 746 ~p~~Rp~m~~vv~~l~~~~~ 765 (785)
+|++||+|.+|++.|+++.+
T Consensus 287 ~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 287 KKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp STTTSCCHHHHHHHHHHHC-
T ss_pred CcccCcCHHHHHHHHHHHhc
Confidence 99999999999999998865
No 164
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=98.42 E-value=6.8e-08 Score=99.16 Aligned_cols=91 Identities=21% Similarity=0.263 Sum_probs=54.7
Q ss_pred ccccccceeeeehhhhhhhhCCCCCch--------hhhccC----cccccccccCCCCCCCc---hhHHHHHHHHHHHhh
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGEL--------ITSLSG----ELFLKDVLDQRLPPPTG---QLAEAVVLTINVALA 741 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~~--------~~~~~~----~~~~~~~~d~~l~~~~~---~~~~~~~~~~~ial~ 741 (785)
..+.++|||||||++.||+||+.|.+. ...... ......+.+..+..... ...++...+.++...
T Consensus 194 ~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~ 273 (303)
T 3gxj_A 194 ESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRE 273 (303)
T ss_dssp HHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTTTCC-CCCCC-CHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHT
T ss_pred ccCcchhHHHHHHHHHHHHhcCCCccccceeeccccccCCCCccHHHHHHHHHHhhcCCCccccccchhhHHHHHHHHHH
Confidence 456789999999999999999555331 000000 00111112222211110 112445567788999
Q ss_pred cCCCCCCCCCChHHHHHHHHhccccc
Q 003931 742 CTSTTPDTRPSMRFVAQELSAKTQAY 767 (785)
Q Consensus 742 C~~~~p~~Rp~m~~vv~~l~~~~~~~ 767 (785)
|.+.+|++||+|.||+++|+++.+..
T Consensus 274 cl~~dP~~Rps~~~i~~~L~~l~~~~ 299 (303)
T 3gxj_A 274 CWYANGAARLTALRIKKTLSQLSQQE 299 (303)
T ss_dssp TCCSSGGGSCCHHHHHHHHHC-CCC-
T ss_pred HhccCcccCCCHHHHHHHHHHhhhhc
Confidence 99999999999999999999987653
No 165
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=98.40 E-value=6.6e-08 Score=99.68 Aligned_cols=95 Identities=22% Similarity=0.300 Sum_probs=61.2
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC--cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG--ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTP 747 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p 747 (785)
+|+......+.++|||||||++.|++||+.|..-...... ........+........ ..+.++...|.+.+|
T Consensus 191 PE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~li~~~l~~dP 264 (310)
T 3s95_A 191 PEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPNCP------PSFFPITVRCCDLDP 264 (310)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBCHHHHHHHTCCTTCC------TTHHHHHHHHTCSSG
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhhhhccccccCCCCCC------HHHHHHHHHHccCCh
Confidence 3555556778999999999999999999988531100000 00111111111111100 124567789999999
Q ss_pred CCCCChHHHHHHHHhcccccCCC
Q 003931 748 DTRPSMRFVAQELSAKTQAYLPE 770 (785)
Q Consensus 748 ~~Rp~m~~vv~~l~~~~~~~~~~ 770 (785)
++||+|.||+++|++++......
T Consensus 265 ~~Rps~~~l~~~L~~l~~~~~~~ 287 (310)
T 3s95_A 265 EKRPSFVKLEHWLETLRMHLAGH 287 (310)
T ss_dssp GGSCCHHHHHHHHHHHHHHHHHC
T ss_pred hhCcCHHHHHHHHHHHHHhccCc
Confidence 99999999999999987765443
No 166
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=98.39 E-value=1.4e-07 Score=96.94 Aligned_cols=87 Identities=25% Similarity=0.358 Sum_probs=58.7
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchh-------hhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELI-------TSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~-------~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|+......+.++|||||||++.|++||+.|.+-. .|...... .+.... ... ..+.++...|
T Consensus 172 PE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~-----~~~~~~---~~~---~~l~~li~~~ 240 (307)
T 2eva_A 172 PEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGT-----RPPLIK---NLP---KPIESLMTRC 240 (307)
T ss_dssp HHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTC-----CCCCBT---TCC---HHHHHHHHHH
T ss_pred hhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCC-----CCCccc---ccC---HHHHHHHHHH
Confidence 35555567789999999999999999999995411 01000000 011111 111 1244667889
Q ss_pred CCCCCCCCCChHHHHHHHHhccccc
Q 003931 743 TSTTPDTRPSMRFVAQELSAKTQAY 767 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~~~~ 767 (785)
.+.+|++||+|.||+++|+.+...+
T Consensus 241 l~~dp~~Rps~~ell~~L~~~~~~~ 265 (307)
T 2eva_A 241 WSKDPSQRPSMEEIVKIMTHLMRYF 265 (307)
T ss_dssp TCSSGGGSCCHHHHHHHHHHHGGGC
T ss_pred hcCChhhCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999999886654
No 167
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=98.39 E-value=3.9e-08 Score=101.96 Aligned_cols=90 Identities=12% Similarity=0.106 Sum_probs=57.8
Q ss_pred cccccccceeeeehhhhhhhhCCCCCch---------hhhccCcccc--------cccccCCCCCCCchhHHHHHHHHHH
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGEL---------ITSLSGELFL--------KDVLDQRLPPPTGQLAEAVVLTINV 738 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~---------~~~~~~~~~~--------~~~~d~~l~~~~~~~~~~~~~~~~i 738 (785)
...+.++|||||||++.|++||+.|.+- .......... .....+.+... .....+...+.++
T Consensus 213 ~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l 291 (322)
T 3soc_A 213 RDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLEDMQEVVVHKKKRPVLRDY-WQKHAGMAMLCET 291 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCGG-GGSSHHHHHHHHH
T ss_pred cCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhccCCchhhhhhhhhcccCCCCcccc-ccccchHHHHHHH
Confidence 4567889999999999999999998531 0000000000 01111111110 0111234456788
Q ss_pred HhhcCCCCCCCCCChHHHHHHHHhcccc
Q 003931 739 ALACTSTTPDTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 739 al~C~~~~p~~Rp~m~~vv~~l~~~~~~ 766 (785)
...|.+.+|++||+|.||+++|++++..
T Consensus 292 i~~cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 292 IEECWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp HHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 8999999999999999999999988653
No 168
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=98.39 E-value=4.6e-08 Score=101.67 Aligned_cols=89 Identities=24% Similarity=0.337 Sum_probs=58.6
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
+|+......+.|+|||||||+++|++| |+.|.+-.. .....+.+......... ..+...+.+++..|++.+|+
T Consensus 188 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~l~~~p~ 261 (327)
T 3poz_A 188 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIP----ASEISSILEKGERLPQP--PICTIDVYMIMVKCWMIDAD 261 (327)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC----GGGHHHHHHTTCCCCCC--TTBCHHHHHHHHHHTCSCGG
T ss_pred hHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCC----HHHHHHHHHcCCCCCCC--ccCCHHHHHHHHHHcCCChh
Confidence 466666778999999999999999999 999954110 00111111111100000 01112355778899999999
Q ss_pred CCCChHHHHHHHHhcc
Q 003931 749 TRPSMRFVAQELSAKT 764 (785)
Q Consensus 749 ~Rp~m~~vv~~l~~~~ 764 (785)
+||+|.||+++|+++.
T Consensus 262 ~Rps~~ell~~l~~~~ 277 (327)
T 3poz_A 262 SRPKFRELIIEFSKMA 277 (327)
T ss_dssp GSCCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHH
Confidence 9999999999998764
No 169
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=98.38 E-value=1.8e-08 Score=103.14 Aligned_cols=101 Identities=13% Similarity=0.133 Sum_probs=61.1
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchh-HHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQL-AEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~-~~~~~~~~~ial~C~~~~p~ 748 (785)
+|.......+.++|||||||++.|++||+.|.+-............+.......+.... ...-..+.++...|.+.+|+
T Consensus 184 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~ 263 (296)
T 3uzp_A 184 INTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFD 263 (296)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTT
T ss_pred hhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCchHHHHhhCCHHHHHHHHHHHhcCcC
Confidence 45555566788999999999999999999995311110000000011110000000000 00012355678899999999
Q ss_pred CCCChHHHHHHHHhcccccCCC
Q 003931 749 TRPSMRFVAQELSAKTQAYLPE 770 (785)
Q Consensus 749 ~Rp~m~~vv~~l~~~~~~~~~~ 770 (785)
+||++.+|++.|+++.......
T Consensus 264 ~Rps~~~l~~~l~~~~~~~~~~ 285 (296)
T 3uzp_A 264 DKPDYSYLRQLFRNLFHRQGFS 285 (296)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHHHHHHhcCCc
Confidence 9999999999999886654443
No 170
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=98.37 E-value=8.4e-08 Score=98.66 Aligned_cols=91 Identities=22% Similarity=0.350 Sum_probs=57.8
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCch------hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL------ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT 743 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~------~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~ 743 (785)
+|.......+.++|||||||++.|++||+.|.+- ...+... .-...+.. .... .+.++...|.
T Consensus 208 PE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~---~l~~li~~~l 276 (309)
T 3p86_A 208 PEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFK-----CKRLEIPR---NLNP---QVAAIIEGCW 276 (309)
T ss_dssp HHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHS-----CCCCCCCT---TSCH---HHHHHHHHHT
T ss_pred hhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhc-----CCCCCCCc---cCCH---HHHHHHHHHc
Confidence 3555556678999999999999999999999541 1111000 00011111 1111 2446677899
Q ss_pred CCCCCCCCChHHHHHHHHhcccccCCCC
Q 003931 744 STTPDTRPSMRFVAQELSAKTQAYLPEP 771 (785)
Q Consensus 744 ~~~p~~Rp~m~~vv~~l~~~~~~~~~~~ 771 (785)
+.+|++||++.+|++.|+.+.....+++
T Consensus 277 ~~dP~~Rps~~~ll~~L~~~~~~~~p~~ 304 (309)
T 3p86_A 277 TNEPWKRPSFATIMDLLRPLIKSAVPPP 304 (309)
T ss_dssp CSSGGGSCCHHHHHHHHHHHHC------
T ss_pred cCChhhCcCHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999998876654443
No 171
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=98.36 E-value=3e-08 Score=104.78 Aligned_cols=93 Identities=11% Similarity=0.084 Sum_probs=61.8
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc-------hhhhccC--cccccccccCCCCCCCchhHHHHHHHHHHHh
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLSG--ELFLKDVLDQRLPPPTGQLAEAVVLTINVAL 740 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial 740 (785)
+|+......+.++|||||||+++||+||+.|.+ ++.+... .....+++|+.+... .. -..+.++..
T Consensus 230 PE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~li~ 304 (364)
T 3op5_A 230 IDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDPKYVRDSKIRYRENIASLMDKCFPAA--NA---PGEIAKYME 304 (364)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHCHHHHHHHHSCTT--CC---CHHHHHHHH
T ss_pred HHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccccccCHHHHHHHHHHhhhhHHHHHHHhcccc--cC---HHHHHHHHH
Confidence 355556667899999999999999999999964 1111111 112233344333211 00 123456677
Q ss_pred hcCCCCCCCCCChHHHHHHHHhccccc
Q 003931 741 ACTSTTPDTRPSMRFVAQELSAKTQAY 767 (785)
Q Consensus 741 ~C~~~~p~~Rp~m~~vv~~l~~~~~~~ 767 (785)
.|.+.+|++||+|.+|++.|+++-...
T Consensus 305 ~cl~~~p~~RP~~~~l~~~l~~~~~~~ 331 (364)
T 3op5_A 305 TVKLLDYTEKPLYENLRDILLQGLKAI 331 (364)
T ss_dssp HHHTCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCCCCCHHHHHHHHHHHHHHc
Confidence 899999999999999999998775543
No 172
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=98.35 E-value=2.6e-08 Score=103.09 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=63.3
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchh--------hhccC---cccccccccCCCCCCCchhHHHHHHHHHH
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELI--------TSLSG---ELFLKDVLDQRLPPPTGQLAEAVVLTINV 738 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~--------~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~~~i 738 (785)
+|.......+.++||||||++++|++||+.|.... .+... .....+.++......... ..-..+.++
T Consensus 206 PE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~l 283 (318)
T 3lxp_A 206 PECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPD--KCPAEVYHL 283 (318)
T ss_dssp HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCCCCCT--TCCHHHHHH
T ss_pred hHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHHhcccCCCCCc--cccHHHHHH
Confidence 45555667888999999999999999999996411 11100 001112222211110000 111235567
Q ss_pred HhhcCCCCCCCCCChHHHHHHHHhcccccCCCC
Q 003931 739 ALACTSTTPDTRPSMRFVAQELSAKTQAYLPEP 771 (785)
Q Consensus 739 al~C~~~~p~~Rp~m~~vv~~l~~~~~~~~~~~ 771 (785)
...|.+.+|++||+|.||+++|+++.+.+..++
T Consensus 284 i~~~l~~dP~~Rps~~ell~~L~~l~~~~~~~~ 316 (318)
T 3lxp_A 284 MKNCWETEASFRPTFENLIPILKTVHEKYQGQA 316 (318)
T ss_dssp HHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC--
T ss_pred HHHHcCCCcccCcCHHHHHHHHHHHHHhhccCC
Confidence 789999999999999999999999988765544
No 173
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=98.35 E-value=1.8e-07 Score=95.86 Aligned_cols=87 Identities=20% Similarity=0.246 Sum_probs=55.4
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccC-----CCCCCCchhHHHHHHHHHHHhhcCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQ-----RLPPPTGQLAEAVVLTINVALACTS 744 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~-----~l~~~~~~~~~~~~~~~~ial~C~~ 744 (785)
+|.-.....+.++|||||||++.||+||+.|..-... ......+... .+.. .... .+.++...|.+
T Consensus 225 PE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~---~~~~~~i~~~~~~~~~~~~---~~s~---~~~~li~~~L~ 295 (336)
T 4g3f_A 225 PEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFR---GPLCLKIASEPPPIREIPP---SCAP---LTAQAIQEGLR 295 (336)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCC---SCCHHHHHHSCCGGGGSCT---TSCH---HHHHHHHHHTC
T ss_pred HHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH---HHHHHHHHcCCCCchhcCc---cCCH---HHHHHHHHHcc
Confidence 4665666788999999999999999999999530000 0000001100 1111 1111 23355678999
Q ss_pred CCCCCCCChHHHHHHHHhccc
Q 003931 745 TTPDTRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 745 ~~p~~Rp~m~~vv~~l~~~~~ 765 (785)
.+|++||++.|+.+.|....+
T Consensus 296 ~dP~~R~sa~el~~~l~~~l~ 316 (336)
T 4g3f_A 296 KEPVHRASAMELRRKVGKALQ 316 (336)
T ss_dssp SSGGGSCCHHHHHHHHHHHHH
T ss_pred CCHhHCcCHHHHHHHHHHHHh
Confidence 999999999999988866543
No 174
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=98.34 E-value=6.2e-08 Score=102.79 Aligned_cols=89 Identities=25% Similarity=0.393 Sum_probs=58.9
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC--CCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ--RLPPPTGQLAEAVVLTINVALACTSTT 746 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~--~l~~~~~~~~~~~~~~~~ial~C~~~~ 746 (785)
+|.......+.|+|||||||++.|++| |+.|..-... ....+.++. ++..+. . +-..+.++...|.+.+
T Consensus 284 PE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~----~~~~~~~~~~~~~~~~~-~---~~~~l~~li~~cl~~d 355 (377)
T 3cbl_A 284 PEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSN----QQTREFVEKGGRLPCPE-L---CPDAVFRLMEQCWAYE 355 (377)
T ss_dssp HHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCH----HHHHHHHHTTCCCCCCT-T---CCHHHHHHHHHHTCSS
T ss_pred HhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH----HHHHHHHHcCCCCCCCC-C---CCHHHHHHHHHHcCCC
Confidence 455556778999999999999999999 9988531100 000011111 111010 1 1123456778999999
Q ss_pred CCCCCChHHHHHHHHhcccc
Q 003931 747 PDTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 747 p~~Rp~m~~vv~~l~~~~~~ 766 (785)
|++||+|.+|+++|++++..
T Consensus 356 P~~Rps~~~i~~~L~~i~~~ 375 (377)
T 3cbl_A 356 PGQRPSFSTIYQELQSIRKR 375 (377)
T ss_dssp GGGSCCHHHHHHHHHHHHHH
T ss_pred chhCcCHHHHHHHHHHHHhh
Confidence 99999999999999998654
No 175
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=98.34 E-value=3e-08 Score=101.52 Aligned_cols=99 Identities=13% Similarity=0.148 Sum_probs=59.5
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchh-HHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQL-AEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~-~~~~~~~~~ial~C~~~~p~ 748 (785)
+|.......+.++|||||||++.|++||+.|..-............+.......+.... ...-..+.++...|.+.+|+
T Consensus 184 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~ 263 (296)
T 4hgt_A 184 INTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFD 263 (296)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTT
T ss_pred hHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccchhhhhhccCCHHHHHHHHHHHhcCCC
Confidence 35555556788999999999999999999995311100000000011110000000000 00012355677889999999
Q ss_pred CCCChHHHHHHHHhcccccC
Q 003931 749 TRPSMRFVAQELSAKTQAYL 768 (785)
Q Consensus 749 ~Rp~m~~vv~~l~~~~~~~~ 768 (785)
+||++.+|++.|+++.....
T Consensus 264 ~Rpt~~~l~~~l~~~~~~~~ 283 (296)
T 4hgt_A 264 DKPDYSYLRQLFRNLFHRQG 283 (296)
T ss_dssp CCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHhC
Confidence 99999999999998766543
No 176
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=98.32 E-value=4.1e-08 Score=103.88 Aligned_cols=90 Identities=21% Similarity=0.315 Sum_probs=57.6
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
+|+......+.++|||||||+++|++| |+.|..-. ......+.++.....+.. ..+-..+.++...|.+.+|+
T Consensus 219 PE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~----~~~~~~~~i~~~~~~~~~--~~~~~~l~~li~~cl~~dp~ 292 (373)
T 2qol_A 219 PEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEM----SNQDVIKAVDEGYRLPPP--MDCPAALYQLMLDCWQKDRN 292 (373)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTC----CHHHHHHHHHTTEECCCC--TTCBHHHHHHHHHHTCSSGG
T ss_pred hhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCC----CHHHHHHHHHcCCCCCCC--ccccHHHHHHHHHHhCcChh
Confidence 466666778899999999999999998 99995310 000001111111100000 01112356778899999999
Q ss_pred CCCChHHHHHHHHhccc
Q 003931 749 TRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 749 ~Rp~m~~vv~~l~~~~~ 765 (785)
+||+|.+|+++|+++..
T Consensus 293 ~RPs~~~i~~~L~~~~~ 309 (373)
T 2qol_A 293 NRPKFEQIVSILDKLIR 309 (373)
T ss_dssp GSCCHHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHh
Confidence 99999999999987743
No 177
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=98.31 E-value=6e-08 Score=99.14 Aligned_cols=96 Identities=19% Similarity=0.234 Sum_probs=60.2
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCch-----hhhccCcc-------cccccccCCCCCCCchhHHHHHHHHH
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL-----ITSLSGEL-------FLKDVLDQRLPPPTGQLAEAVVLTIN 737 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~-----~~~~~~~~-------~~~~~~d~~l~~~~~~~~~~~~~~~~ 737 (785)
+|.......+.++|||||||++.|++||+.|... ..+..... ...+.+......+.. ..+-..+.+
T Consensus 186 PE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~ 263 (295)
T 3ugc_A 186 PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRP--DGCPDEIYM 263 (295)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCC--TTCCHHHHH
T ss_pred cHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHHHHhhhcCccccchhHHHHHHHHhccCcCCCC--cCcCHHHHH
Confidence 3555566778999999999999999999988641 11111100 011111111100000 011123556
Q ss_pred HHhhcCCCCCCCCCChHHHHHHHHhccccc
Q 003931 738 VALACTSTTPDTRPSMRFVAQELSAKTQAY 767 (785)
Q Consensus 738 ial~C~~~~p~~Rp~m~~vv~~l~~~~~~~ 767 (785)
+...|.+.+|++||+|.||+++|+++....
T Consensus 264 li~~~l~~dp~~Rps~~el~~~L~~l~~~l 293 (295)
T 3ugc_A 264 IMTECWNNNVNQRPSFRDLALRVDQIRDNM 293 (295)
T ss_dssp HHHHHSCSSGGGSCCHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCChhhCCCHHHHHHHHHHHHHhc
Confidence 788999999999999999999999987653
No 178
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=98.30 E-value=2.3e-08 Score=102.48 Aligned_cols=101 Identities=10% Similarity=0.077 Sum_probs=60.2
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCch-hHHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQ-LAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~-~~~~~~~~~~ial~C~~~~p~ 748 (785)
+|.-.....+.++|||||||++.|++||+.|..-............+........... ....-..+.++...|.+.+|+
T Consensus 187 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~ 266 (298)
T 1csn_A 187 INTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFD 266 (298)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTT
T ss_pred chhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCccHHHHHhhCcHHHHHHHHHHhcCCcc
Confidence 3555556678899999999999999999999531100000000000000000000000 000012345677889999999
Q ss_pred CCCChHHHHHHHHhcccccCCC
Q 003931 749 TRPSMRFVAQELSAKTQAYLPE 770 (785)
Q Consensus 749 ~Rp~m~~vv~~l~~~~~~~~~~ 770 (785)
+||++.+|++.|+++.......
T Consensus 267 ~RP~~~~l~~~l~~~~~~~~~~ 288 (298)
T 1csn_A 267 ATPDYDYLQGLFSKVLERLNTT 288 (298)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999887654443
No 179
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=98.29 E-value=1.2e-07 Score=103.20 Aligned_cols=86 Identities=28% Similarity=0.466 Sum_probs=59.5
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|.......+.|+|||||||++.|++| |+.|.. +...+... .++..+. . +-..+.++...|
T Consensus 354 PE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~--------~~~~~~~-~---~~~~l~~li~~c 421 (454)
T 1qcf_A 354 PEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERG--------YRMPRPE-N---CPEELYNIMMRC 421 (454)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHT--------CCCCCCT-T---SCHHHHHHHHHH
T ss_pred HHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC--------CCCCCCC-C---CCHHHHHHHHHH
Confidence 355556678899999999999999999 999853 11111100 0111111 1 112355678899
Q ss_pred CCCCCCCCCChHHHHHHHHhccccc
Q 003931 743 TSTTPDTRPSMRFVAQELSAKTQAY 767 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~~~~ 767 (785)
.+.+|++||+|.+|+++|+++....
T Consensus 422 l~~dp~~RPt~~~i~~~L~~~~~~~ 446 (454)
T 1qcf_A 422 WKNRPEERPTFEYIQSVLDDFYTAT 446 (454)
T ss_dssp TCSSGGGSCCHHHHHHHHHTSSSSS
T ss_pred ccCChhHCcCHHHHHHHHHHHHhcc
Confidence 9999999999999999999986643
No 180
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=98.29 E-value=2.3e-07 Score=95.04 Aligned_cols=84 Identities=15% Similarity=0.224 Sum_probs=53.4
Q ss_pred ccccccceeeeehhhhhhhhC----------CCCCchhhhccCcc---ccc-----ccccCCCCCCCchhHHHHHHHHHH
Q 003931 677 RVTDKCDVFSFGVVALEVMMG----------RHPGELITSLSGEL---FLK-----DVLDQRLPPPTGQLAEAVVLTINV 738 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltg----------k~p~~~~~~~~~~~---~~~-----~~~d~~l~~~~~~~~~~~~~~~~i 738 (785)
..+.++|||||||++.|++|| +.|.. ....... ... +...+.+... .........+.++
T Consensus 199 ~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l 275 (301)
T 3q4u_A 199 DSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFY--DVVPNDPSFEDMRKVVCVDQQRPNIPNR-WFSDPTLTSLAKL 275 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTT--TTSCSSCCHHHHHHHHTTSCCCCCCCGG-GGGSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHHHHhhhcCcccccccccccc--ccCCCCcchhhhhHHHhccCCCCCCChh-hccCccHHHHHHH
Confidence 456799999999999999999 44421 0000000 000 1111111110 0112334557788
Q ss_pred HhhcCCCCCCCCCChHHHHHHHHhc
Q 003931 739 ALACTSTTPDTRPSMRFVAQELSAK 763 (785)
Q Consensus 739 al~C~~~~p~~Rp~m~~vv~~l~~~ 763 (785)
...|.+.+|++||+|.||+++|+++
T Consensus 276 i~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 276 MKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp HHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHhhcChhhCCCHHHHHHHHhcc
Confidence 9999999999999999999999876
No 181
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=98.28 E-value=1.8e-07 Score=96.15 Aligned_cols=91 Identities=15% Similarity=0.212 Sum_probs=57.1
Q ss_pred hcccccccceeeeehhhhhhhhCCCCCchhhhccC--cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931 675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG--ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS 752 (785)
Q Consensus 675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~ 752 (785)
....+.++|||||||++.|++||+.|.+-...... .........+.+....... -..+.++...|.+.+|++||+
T Consensus 211 ~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~~p~~RPs 287 (307)
T 3lb7_A 211 NNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNC---PKAMKRLVADCVKKVKEERPL 287 (307)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTCCCCCSTTSCSSS---CHHHHHHHHHHSCSSSTTSCC
T ss_pred CCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHHHHHHhcCCCCcchhhhhcCC---cHHHHHHHHHHhhCChhhCcC
Confidence 34567899999999999999999999541000000 0000011112221100111 123456778899999999999
Q ss_pred hHHHHHHHHhcccccC
Q 003931 753 MRFVAQELSAKTQAYL 768 (785)
Q Consensus 753 m~~vv~~l~~~~~~~~ 768 (785)
+.||++.|+.+.....
T Consensus 288 ~~~il~~l~~l~~~~p 303 (307)
T 3lb7_A 288 FPQILSSIELLQHSLP 303 (307)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhhcc
Confidence 9999999998876543
No 182
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=98.26 E-value=3.1e-07 Score=92.50 Aligned_cols=88 Identities=22% Similarity=0.299 Sum_probs=55.2
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
+|.......+.++||||||++++|++||+.|..-...... ......-....... .. -..+.++...|.+.+|+
T Consensus 183 PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~li~~~l~~~p~ 256 (271)
T 3dtc_A 183 PEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLALPIPS---TC---PEPFAKLMEDCWNPDPH 256 (271)
T ss_dssp HHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSCCCCCCCT---TC---CHHHHHHHHHHTCSSGG
T ss_pred HHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCCCCCCCCc---cc---CHHHHHHHHHHhcCCcc
Confidence 3555556678899999999999999999999531000000 00000000111111 11 12345677889999999
Q ss_pred CCCChHHHHHHHHhc
Q 003931 749 TRPSMRFVAQELSAK 763 (785)
Q Consensus 749 ~Rp~m~~vv~~l~~~ 763 (785)
+||++.||++.|+++
T Consensus 257 ~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 257 SRPSFTNILDQLTTI 271 (271)
T ss_dssp GSCCHHHHHHHHHC-
T ss_pred cCcCHHHHHHHHhcC
Confidence 999999999999764
No 183
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=98.25 E-value=2.3e-07 Score=96.74 Aligned_cols=95 Identities=11% Similarity=0.125 Sum_probs=58.8
Q ss_pred cccccccceeeeehhhhhhhhCCCCCchhhh-----------ccCccc--------ccccccCCCCCCCchhHHHHHHHH
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGELITS-----------LSGELF--------LKDVLDQRLPPPTGQLAEAVVLTI 736 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~-----------~~~~~~--------~~~~~d~~l~~~~~~~~~~~~~~~ 736 (785)
...+.++|||||||++.||+||+.|..-... ...... ..+...+.+.............+.
T Consensus 210 ~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 289 (336)
T 3g2f_A 210 ESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFPEAWKENSLAVRSLK 289 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCCTTCCCCSHHHHHHH
T ss_pred cccccccchHHHHHHHHHHHhcCCcCCCccchhHHHHhhhcccCCCchHHHHHhhhcccccCCCCCcccccccchHHHHH
Confidence 4567899999999999999999877320000 000000 001111111111111112333567
Q ss_pred HHHhhcCCCCCCCCCChHHHHHHHHhcccccCCC
Q 003931 737 NVALACTSTTPDTRPSMRFVAQELSAKTQAYLPE 770 (785)
Q Consensus 737 ~ial~C~~~~p~~Rp~m~~vv~~l~~~~~~~~~~ 770 (785)
++...|.+.+|++||++.||+++|+++...+...
T Consensus 290 ~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~ 323 (336)
T 3g2f_A 290 ETIEDCWDQDAEARLTAQXAEERMAELMMIWERN 323 (336)
T ss_dssp HHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC-
T ss_pred HHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhc
Confidence 8889999999999999999999999987765443
No 184
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=98.25 E-value=2.8e-07 Score=92.67 Aligned_cols=88 Identities=19% Similarity=0.359 Sum_probs=57.9
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhcc---CcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLS---GELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTST 745 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~---~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~ 745 (785)
+|.......+.++||||||+++.|++| |+.|.+...... ..........+.. .. + .+.++...|.+.
T Consensus 174 PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~---~l~~li~~~l~~ 244 (268)
T 3sxs_A 174 PEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHRLYRPHL-----AS-D---TIYQIMYSCWHE 244 (268)
T ss_dssp HHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTT-----SC-H---HHHHHHHHTTCS
T ss_pred HHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCCCCCCCCc-----Ch-H---HHHHHHHHHcCC
Confidence 455556678899999999999999999 999964111000 0000000111111 11 1 245677889999
Q ss_pred CCCCCCChHHHHHHHHhcccc
Q 003931 746 TPDTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 746 ~p~~Rp~m~~vv~~l~~~~~~ 766 (785)
+|++||++.||++.|+.+++.
T Consensus 245 ~p~~Rps~~~ll~~L~~l~~~ 265 (268)
T 3sxs_A 245 LPEKRPTFQQLLSSIEPLREK 265 (268)
T ss_dssp SGGGSCCHHHHHHHHGGGCC-
T ss_pred ChhhCcCHHHHHHHHHHhhhc
Confidence 999999999999999988654
No 185
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=98.24 E-value=3.8e-07 Score=91.70 Aligned_cols=72 Identities=17% Similarity=0.301 Sum_probs=46.5
Q ss_pred cccccccceeeeehhhhhhhhCCCCCc-------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
.+.+.|+|||||||++.||+||+.|.. +...+.... ....+++.. .. .+.++...|.+.+|+
T Consensus 204 ~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~-~~~~~~~~~-------~~---~~~~li~~~L~~dP~ 272 (290)
T 3fpq_A 204 EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGV-KPASFDKVA-------IP---EVKEIIEGCIRQNKD 272 (290)
T ss_dssp TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTC-CCGGGGGCC-------CH---HHHHHHHHHSCSSGG
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCC-CCCCCCccC-------CH---HHHHHHHHHccCChh
Confidence 357899999999999999999999953 111111100 000011111 01 234567789999999
Q ss_pred CCCChHHHHH
Q 003931 749 TRPSMRFVAQ 758 (785)
Q Consensus 749 ~Rp~m~~vv~ 758 (785)
+|||+.|+.+
T Consensus 273 ~R~s~~e~l~ 282 (290)
T 3fpq_A 273 ERYSIKDLLN 282 (290)
T ss_dssp GSCCHHHHHT
T ss_pred HCcCHHHHhc
Confidence 9999999853
No 186
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=98.23 E-value=2.3e-07 Score=96.99 Aligned_cols=87 Identities=17% Similarity=0.224 Sum_probs=56.0
Q ss_pred ccccccceeeeehhhhhhhhCC----------CCCchhhhccCc----ccc----cccccCCCCCCCchhHHHHHHHHHH
Q 003931 677 RVTDKCDVFSFGVVALEVMMGR----------HPGELITSLSGE----LFL----KDVLDQRLPPPTGQLAEAVVLTINV 738 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk----------~p~~~~~~~~~~----~~~----~~~~d~~l~~~~~~~~~~~~~~~~i 738 (785)
..+.++|||||||++.||+||+ .|.. ...... ... .....+.+... ....++...+.++
T Consensus 233 ~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l 309 (342)
T 1b6c_B 233 ESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYY--DLVPSDPSVEEMRKVVCEQKLRPNIPNR-WQSCEALRVMAKI 309 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTT--TTSCSSCCHHHHHHHHTTSCCCCCCCGG-GGTSHHHHHHHHH
T ss_pred ccCCcccHHHHHHHHHHHHhccCcCCcccccccCcc--ccCcCcccHHHHHHHHHHHHhCCCCccc-ccchhHHHHHHHH
Confidence 3457899999999999999994 4421 000000 000 11122222110 0112344567788
Q ss_pred HhhcCCCCCCCCCChHHHHHHHHhcccc
Q 003931 739 ALACTSTTPDTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 739 al~C~~~~p~~Rp~m~~vv~~l~~~~~~ 766 (785)
...|++.+|++||+|.||++.|+++.++
T Consensus 310 i~~cl~~dp~~Rps~~~i~~~L~~i~~~ 337 (342)
T 1b6c_B 310 MRECWYANGAARLTALRIKKTLSQLSQQ 337 (342)
T ss_dssp HHHHCCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred HHHHhccChhhCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999998764
No 187
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=3.3e-07 Score=90.26 Aligned_cols=64 Identities=31% Similarity=0.374 Sum_probs=29.8
Q ss_pred hccccCCeeecccCcccc--CCCcccccCCCCCeecccCCcccCcCCcccccCC--CCCeEecCCCcCcc
Q 003931 509 GNLTRLGVLSLDSNELTG--KIPTDLGKLVKLFNLNLSNNHLTGEIPKSISNLT--ELAYLDLSNNKLTG 574 (785)
Q Consensus 509 ~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~--~L~~L~Ls~n~l~~ 574 (785)
.++++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+. .|++|++++|.+.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 344555555555555554 2233444555555555555555432 1122222 44444444444443
No 188
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=98.23 E-value=2.3e-07 Score=100.89 Aligned_cols=89 Identities=26% Similarity=0.434 Sum_probs=60.5
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|.......+.|+|||||||++.|++| |+.|.. ....+.... ++..+. . +-..+.++...|
T Consensus 350 PE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~--------~~~~~~-~---~~~~l~~li~~c 417 (452)
T 1fmk_A 350 PEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGY--------RMPCPP-E---CPESLHDLMCQC 417 (452)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTC--------CCCCCT-T---SCHHHHHHHHHH
T ss_pred HhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC--------CCCCCC-C---CCHHHHHHHHHH
Confidence 455556678899999999999999999 898853 111111100 111010 1 112345677899
Q ss_pred CCCCCCCCCChHHHHHHHHhcccccCCC
Q 003931 743 TSTTPDTRPSMRFVAQELSAKTQAYLPE 770 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~~~~~~~ 770 (785)
.+.+|++||+|.+|+++|+++.....++
T Consensus 418 l~~dP~~Rpt~~~l~~~L~~~~~~~~~~ 445 (452)
T 1fmk_A 418 WRKEPEERPTFEYLQAFLEDYFTSTEPQ 445 (452)
T ss_dssp TCSSGGGSCCHHHHHHHHHTTTSCSCCC
T ss_pred ccCChhhCcCHHHHHHHHHHHhccCCcc
Confidence 9999999999999999999886654443
No 189
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=98.23 E-value=1.2e-07 Score=99.32 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=58.0
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCch--hh-----hccC--cccccccccCCCCCCCchhHHHHHHHHHHHh
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL--IT-----SLSG--ELFLKDVLDQRLPPPTGQLAEAVVLTINVAL 740 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~--~~-----~~~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial 740 (785)
+|+......+.++|||||||+++|++||+.|.+- .. .... .....+.+...... .. .-..+.++..
T Consensus 229 PE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~l~~li~ 303 (345)
T 2v62_A 229 LDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPVAVQTAKTNLLDELPQSVLKWAPS--GS---SCCEIAQFLV 303 (345)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHHHHHHHHHHHHHTTTHHHHHHSCT--TS---CCHHHHHHHH
T ss_pred HHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccHHHHHHHHhhcccccHHHHhhccc--cc---cHHHHHHHHH
Confidence 4555566778999999999999999999999630 00 0000 00000000000000 00 0113556677
Q ss_pred hcCCCCCCCCCChHHHHHHHHhcccc
Q 003931 741 ACTSTTPDTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 741 ~C~~~~p~~Rp~m~~vv~~l~~~~~~ 766 (785)
.|.+.+|++||+|.+|++.|++....
T Consensus 304 ~~l~~dp~~Rps~~~l~~~L~~~~~~ 329 (345)
T 2v62_A 304 CAHSLAYDEKPNYQALKKILNPHGIP 329 (345)
T ss_dssp HHHTCCTTCCCCHHHHHHHHCTTCCC
T ss_pred HHhhcCcccCCCHHHHHHHHhccCCc
Confidence 99999999999999999999887553
No 190
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=98.22 E-value=1.5e-07 Score=98.86 Aligned_cols=94 Identities=13% Similarity=-0.003 Sum_probs=60.2
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhh--------hccC-cccccccccCCCCCCCchhHHHHHHHHHHHh
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELIT--------SLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVAL 740 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~--------~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial 740 (785)
+|+......+.++|||||||+++|++||+.|..-.. .... .....+..++.... .... ..+.++..
T Consensus 237 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~l~~li~ 311 (352)
T 2jii_A 237 MDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPNTEDIMKQKQKFVDKPGPFVGPCGHW--IRPS---ETLQKYLK 311 (352)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCHHHHHHHHHHHHHSCCCEECTTSCE--ECCC---HHHHHHHH
T ss_pred HHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcCHHHHHHHHHhccCChhhhhhhcccc--CCCc---HHHHHHHH
Confidence 355555677899999999999999999999964111 0000 00111111111100 0001 23456677
Q ss_pred hcCCCCCCCCCChHHHHHHHHhcccccC
Q 003931 741 ACTSTTPDTRPSMRFVAQELSAKTQAYL 768 (785)
Q Consensus 741 ~C~~~~p~~Rp~m~~vv~~l~~~~~~~~ 768 (785)
.|.+.+|++||+|.+|+++|+++.....
T Consensus 312 ~~l~~dp~~Rps~~~l~~~L~~~~~~~~ 339 (352)
T 2jii_A 312 VVMALTYEEKPPYAMLRNNLEALLQDLR 339 (352)
T ss_dssp HHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred HHHhCChhhCCCHHHHHHHHHHHHHhcC
Confidence 8999999999999999999998866543
No 191
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=98.22 E-value=1.9e-07 Score=96.85 Aligned_cols=85 Identities=25% Similarity=0.323 Sum_probs=58.5
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|+......+.++|||||||+++|++| |+.|.. +...+... ..+.... . .-..+.++...|
T Consensus 223 PE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~------~~~~~~~---~---~~~~l~~li~~~ 290 (325)
T 3kul_A 223 PEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEG------YRLPAPM---G---CPHALHQLMLDC 290 (325)
T ss_dssp HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTT------CCCCCCT---T---CCHHHHHHHHHH
T ss_pred HhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcC------CCCCCCC---C---cCHHHHHHHHHH
Confidence 455556678899999999999999999 999953 11111110 0000100 1 112345678899
Q ss_pred CCCCCCCCCChHHHHHHHHhcccc
Q 003931 743 TSTTPDTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~~~ 766 (785)
.+.+|++||+|.||+++|+.+...
T Consensus 291 l~~dp~~Rps~~eil~~L~~l~~~ 314 (325)
T 3kul_A 291 WHKDRAQRPRFSQIVSVLDALIRS 314 (325)
T ss_dssp TCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred ccCChhhCcCHHHHHHHHHHHHhC
Confidence 999999999999999999988654
No 192
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=98.22 E-value=3.4e-07 Score=94.66 Aligned_cols=87 Identities=14% Similarity=0.184 Sum_probs=52.6
Q ss_pred cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF 755 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~ 755 (785)
...+.++||||||+++.|++||+.|.+-...-........-..+..... ... ..+.++...|.+.+|++||++.+
T Consensus 218 ~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~l~~li~~~l~~~p~~Rpt~~~ 292 (319)
T 2y4i_B 218 LPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTGMKPNLSQI--GMG---KEISDILLFCWAFEQEERPTFTK 292 (319)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHHHHTTCCCCCCCS--SCC---TTHHHHHHHHHCSSTTTSCCHHH
T ss_pred cCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhccCCCCCCCcC--CCC---HHHHHHHHHHhcCChhhCcCHHH
Confidence 3467899999999999999999999541000000000000011111110 000 12446778899999999999999
Q ss_pred HHHHHHhccccc
Q 003931 756 VAQELSAKTQAY 767 (785)
Q Consensus 756 vv~~l~~~~~~~ 767 (785)
|+++|+++....
T Consensus 293 l~~~l~~l~~~~ 304 (319)
T 2y4i_B 293 LMDMLEKLPKRN 304 (319)
T ss_dssp HHHHHTTC----
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
No 193
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.21 E-value=2.2e-07 Score=87.21 Aligned_cols=118 Identities=9% Similarity=0.065 Sum_probs=82.6
Q ss_pred cccccCCCCCCEEeCCCC-CCCCCC----ccccCCCCCCcEEEccCCCCcccC----CccCCCCCCccEEECCCCCCccc
Q 003931 22 PFQLSSLRKVRYLDLGGN-FLETPD----WSKFSSMPSLTHLGLYLNELTLEF----PSFILTCRNLTYLDLSLNKLSGL 92 (785)
Q Consensus 22 ~~~~~~l~~L~~L~L~~n-~i~~~~----~~~f~~l~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~L~Ls~n~i~~~ 92 (785)
...+...++|++|+|++| .+.... ..++...++|++|+|++|.+.... ...+...+.|++|+|++|.|.+.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345677888888888888 776432 234566788888888888887532 33445567889999999988743
Q ss_pred CC---hhhhcCCCCCcEEEC--CCCCCcccC----CccccCCCCCcEEEcCCCccc
Q 003931 93 IP---ERLFTNLGKLEYLNL--TENQFQGKL----SPNVSKLSNLIDLRLATNKFS 139 (785)
Q Consensus 93 ~~---~~~f~~l~~L~~L~L--s~n~i~~~~----~~~~~~l~~L~~L~L~~n~~~ 139 (785)
-. ...+...+.|++|+| ++|.+.... ...+...++|++|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 11 122356778999999 778887542 344556688999999998875
No 194
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=98.20 E-value=3.1e-07 Score=92.37 Aligned_cols=91 Identities=22% Similarity=0.296 Sum_probs=57.8
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
+|+......+.++||||+|+++.|++| |+.|.+-...........+-..+..... . . ..+.++...|.+.+|+
T Consensus 176 PE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~-~---~~~~~li~~~l~~~p~ 249 (269)
T 4hcu_A 176 PEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRL--A-S---THVYQIMNHCWRERPE 249 (269)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTT--S-C---HHHHHHHHHHTCSSGG
T ss_pred HHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcCccCCCCCc--C-C---HHHHHHHHHHccCCcc
Confidence 455556678889999999999999999 8988541100000000000000111000 1 1 1245667889999999
Q ss_pred CCCChHHHHHHHHhcccc
Q 003931 749 TRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 749 ~Rp~m~~vv~~l~~~~~~ 766 (785)
+||++.||++.|+++.++
T Consensus 250 ~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 250 DRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp GSCCHHHHHHHHHHHHHC
T ss_pred cCcCHHHHHHHHHHHHHc
Confidence 999999999999988653
No 195
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=98.20 E-value=3.8e-07 Score=91.77 Aligned_cols=81 Identities=17% Similarity=0.320 Sum_probs=51.4
Q ss_pred ccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHH
Q 003931 679 TDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVA 757 (785)
Q Consensus 679 t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv 757 (785)
+.++||||||+++.|++||+.|.+-...... .....+-..+..... ... .+.++...|.+.+|++||++.||+
T Consensus 189 ~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~li~~~l~~~p~~Rps~~~il 262 (271)
T 3kmu_A 189 RRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLRPTIPPG---ISP---HVSKLMKICMNEDPAKRPKFDMIV 262 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSCCCCCCCTT---CCH---HHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhcCCCCCCCCC---CCH---HHHHHHHHHcCCChhhCcCHHHHH
Confidence 3479999999999999999999541000000 000001111111111 111 244667789999999999999999
Q ss_pred HHHHhccc
Q 003931 758 QELSAKTQ 765 (785)
Q Consensus 758 ~~l~~~~~ 765 (785)
+.|+++.+
T Consensus 263 ~~L~~l~~ 270 (271)
T 3kmu_A 263 PILEKMQD 270 (271)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhhc
Confidence 99998864
No 196
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=98.19 E-value=4.8e-07 Score=93.10 Aligned_cols=94 Identities=16% Similarity=0.179 Sum_probs=59.1
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCch-----hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL-----ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTS 744 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~-----~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~ 744 (785)
+|.......+.++||||||+++.|++||+.|..- ...... ....-.+.... ....+ .+.++...|.+
T Consensus 205 PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~---~l~~li~~~l~ 276 (310)
T 2wqm_A 205 PERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKK---IEQCDYPPLPS--DHYSE---ELRQLVNMCIN 276 (310)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHH---HHTTCSCCCCT--TTSCH---HHHHHHHHHTC
T ss_pred hHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHH---hhcccCCCCcc--cccCH---HHHHHHHHHcC
Confidence 3554556678899999999999999999999531 000000 00000011110 01111 24466778999
Q ss_pred CCCCCCCChHHHHHHHHhcccccCCCC
Q 003931 745 TTPDTRPSMRFVAQELSAKTQAYLPEP 771 (785)
Q Consensus 745 ~~p~~Rp~m~~vv~~l~~~~~~~~~~~ 771 (785)
.+|++||++.+|++.|++++.....++
T Consensus 277 ~dp~~Rps~~~il~~l~~l~~~~~~~~ 303 (310)
T 2wqm_A 277 PDPEKRPDVTYVYDVAKRMHACTASSL 303 (310)
T ss_dssp SSGGGSCCHHHHHHHHHHHHHHHC---
T ss_pred CChhhCCCHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999877654443
No 197
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=98.19 E-value=4.2e-07 Score=91.94 Aligned_cols=91 Identities=21% Similarity=0.235 Sum_probs=58.0
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
+|.......+.++||||||+++.|++| |+.|..-............-..+.... ... ..+.++.-.|.+.+|+
T Consensus 183 PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~l~~li~~~l~~~p~ 256 (278)
T 1byg_A 183 PEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPD---GCP---PAVYEVMKNCWHLDAA 256 (278)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCCCCCCT---TCC---HHHHHHHHHHTCSSGG
T ss_pred HHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCCCCCcc---cCC---HHHHHHHHHHhcCChh
Confidence 355455667889999999999999999 998853110000000000001111111 111 2244567789999999
Q ss_pred CCCChHHHHHHHHhcccc
Q 003931 749 TRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 749 ~Rp~m~~vv~~l~~~~~~ 766 (785)
+||++.||++.|++++..
T Consensus 257 ~Rps~~~l~~~L~~i~~~ 274 (278)
T 1byg_A 257 MRPSFLQLREQLEHIKTH 274 (278)
T ss_dssp GSCCHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHhh
Confidence 999999999999998764
No 198
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=98.19 E-value=5.8e-07 Score=91.45 Aligned_cols=83 Identities=22% Similarity=0.353 Sum_probs=54.3
Q ss_pred hcccccccceeeeehhhhhhhhCCCCCc-------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931 675 TMRVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTP 747 (785)
Q Consensus 675 ~~~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p 747 (785)
....+.++||||||++++|++||+.|.+ +...+.. ....+........ +-..+.++...|.+.+|
T Consensus 199 ~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~~l~~li~~~l~~~p 270 (289)
T 3og7_A 199 SNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGR-----GSLSPDLSKVRSN---CPKRMKRLMAECLKKKR 270 (289)
T ss_dssp -CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHH-----TSCCCCTTSSCTT---SCHHHHHHHHHHTCSSG
T ss_pred CCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcc-----cccCcchhhcccc---CCHHHHHHHHHHccCCh
Confidence 3456779999999999999999999953 1111110 0111111110001 11234567788999999
Q ss_pred CCCCChHHHHHHHHhccc
Q 003931 748 DTRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 748 ~~Rp~m~~vv~~l~~~~~ 765 (785)
++||++.||+++|+++..
T Consensus 271 ~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 271 DERPSFPRILAEIEELAR 288 (289)
T ss_dssp GGSCCHHHHHHHHHHTTC
T ss_pred hhCCCHHHHHHHHHHHhh
Confidence 999999999999998754
No 199
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=98.18 E-value=1.8e-07 Score=97.21 Aligned_cols=93 Identities=22% Similarity=0.329 Sum_probs=60.0
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc-----hhhhccCcc-------cccccccCC--CCCCCchhHHHHHHH
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE-----LITSLSGEL-------FLKDVLDQR--LPPPTGQLAEAVVLT 735 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~-----~~~~~~~~~-------~~~~~~d~~--l~~~~~~~~~~~~~~ 735 (785)
+|.......+.++||||||+++.|++||+.|.. +........ ...+.+... ...+. . .-..+
T Consensus 217 PE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~l 292 (326)
T 2w1i_A 217 PESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAEFMRMIGNDKQGQMIVFHLIELLKNNGRLPRPD-G---CPDEI 292 (326)
T ss_dssp HHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHHHHHHHHCTTCCTHHHHHHHHHHHHTTCCCCCCT-T---CCHHH
T ss_pred chhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHHHHHHhhccccchhhhHHHHHHHhhcCCCCCCCC-c---ccHHH
Confidence 355555677899999999999999999998854 111111100 011111111 11111 1 11235
Q ss_pred HHHHhhcCCCCCCCCCChHHHHHHHHhcccc
Q 003931 736 INVALACTSTTPDTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 736 ~~ial~C~~~~p~~Rp~m~~vv~~l~~~~~~ 766 (785)
.++...|.+.+|++||++.||+++|++++..
T Consensus 293 ~~li~~cl~~dP~~Rps~~el~~~L~~l~~~ 323 (326)
T 2w1i_A 293 YMIMTECWNNNVNQRPSFRDLALRVDQIRDQ 323 (326)
T ss_dssp HHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 5677899999999999999999999988764
No 200
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=98.18 E-value=2.4e-07 Score=100.70 Aligned_cols=90 Identities=22% Similarity=0.317 Sum_probs=58.7
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC-CCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ-RLPPPTGQLAEAVVLTINVALACTSTTP 747 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~-~l~~~~~~~~~~~~~~~~ial~C~~~~p 747 (785)
+|.......+.|+|||||||++.||+| |+.|..-... ......+... ++..+. . +-..+.++...|++.+|
T Consensus 355 PE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~---~~~~~~i~~~~~~~~p~-~---~~~~l~~li~~cl~~dp 427 (450)
T 1k9a_A 355 PEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL---KDVVPRVEKGYKMDAPD-G---CPPAVYDVMKNCWHLDA 427 (450)
T ss_dssp HHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCT---TTHHHHHHTTCCCCCCT-T---CCHHHHHHHHHHTCSSG
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH---HHHHHHHHcCCCCCCCC-c---CCHHHHHHHHHHcCCCh
Confidence 455556778899999999999999999 9988531100 0000000000 111111 1 11234566788999999
Q ss_pred CCCCChHHHHHHHHhcccc
Q 003931 748 DTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 748 ~~Rp~m~~vv~~l~~~~~~ 766 (785)
++||+|.++++.|+++...
T Consensus 428 ~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 428 ATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp GGSCCHHHHHHHHHHHHHT
T ss_pred hHCcCHHHHHHHHHHHHHh
Confidence 9999999999999988654
No 201
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=98.18 E-value=3.9e-07 Score=96.82 Aligned_cols=87 Identities=22% Similarity=0.303 Sum_probs=59.2
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|+......+.++|||||||++.|++| |+.|.. +...+.... .+.... .. -..+.++...|
T Consensus 262 PE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~~~~~~~~------~~~~~~---~~---~~~l~~li~~~ 329 (382)
T 3tt0_A 262 PEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGH------RMDKPS---NC---TNELYMMMRDC 329 (382)
T ss_dssp HHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTC------CCCCCS---SC---CHHHHHHHHHH
T ss_pred HHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC------CCCCCc---cC---CHHHHHHHHHH
Confidence 455556678899999999999999999 998854 111111110 011111 11 12345677889
Q ss_pred CCCCCCCCCChHHHHHHHHhcccccC
Q 003931 743 TSTTPDTRPSMRFVAQELSAKTQAYL 768 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~~~~~ 768 (785)
.+.+|++||+|.||++.|+++.....
T Consensus 330 l~~dP~~Rps~~ell~~L~~~~~~~~ 355 (382)
T 3tt0_A 330 WHAVPSQRPTFKQLVEDLDRIVALTS 355 (382)
T ss_dssp TCSSGGGSCCHHHHHHHHHHHHHHSC
T ss_pred cCCChhhCcCHHHHHHHHHHHHHHHh
Confidence 99999999999999999998865443
No 202
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=98.18 E-value=6.1e-07 Score=93.04 Aligned_cols=83 Identities=22% Similarity=0.298 Sum_probs=56.1
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCch------hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGEL------ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~------~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|.......+.++|||||||+++|++| |+.|.+- ...+.... ....+.. +-..+.++...|
T Consensus 186 PE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~---~~~~~~~---------~~~~~~~li~~~ 253 (325)
T 3kex_A 186 LESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGE---RLAQPQI---------CTIDVYMVMVKC 253 (325)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTC---BCCCCTT---------BCTTTTHHHHHH
T ss_pred hHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCC---CCCCCCc---------CcHHHHHHHHHH
Confidence 455556678899999999999999999 9999541 11111100 0000000 001234567789
Q ss_pred CCCCCCCCCChHHHHHHHHhcc
Q 003931 743 TSTTPDTRPSMRFVAQELSAKT 764 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~ 764 (785)
.+.+|++||+|.||++.|+++.
T Consensus 254 l~~dp~~Rps~~el~~~l~~~~ 275 (325)
T 3kex_A 254 WMIDENIRPTFKELANEFTRMA 275 (325)
T ss_dssp TCSCTTTSCCHHHHHHHHHHHT
T ss_pred cCCChhhCcCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 203
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=98.17 E-value=2.6e-07 Score=95.55 Aligned_cols=87 Identities=17% Similarity=0.297 Sum_probs=55.4
Q ss_pred ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCC-CchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPP-TGQLAEAVVLTINVALACTSTTPDTRPSMRF 755 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~ 755 (785)
..+.++|||||||+++|++||+.|.+..... .......+......+ ..... ..+.++...|.+.+|++||++.|
T Consensus 222 ~~~~~~Di~slG~il~el~~g~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp~~Rps~~~ 296 (317)
T 2buj_A 222 VIDERTDVWSLGCVLYAMMFGEGPYDMVFQK--GDSVALAVQNQLSIPQSPRHS---SALWQLLNSMMTVDPHQRPHIPL 296 (317)
T ss_dssp EECTHHHHHHHHHHHHHHHHSSCTTHHHHHT--TSCHHHHHHCC--CCCCTTSC---HHHHHHHHHHTCSSGGGSCCHHH
T ss_pred CCCchhhHHHHHHHHHHHHhCCCChhhhhcc--cchhhHHhhccCCCCccccCC---HHHHHHHHHHhhcChhhCCCHHH
Confidence 3578999999999999999999996421110 000000000010000 00111 13456778899999999999999
Q ss_pred HHHHHHhcccccC
Q 003931 756 VAQELSAKTQAYL 768 (785)
Q Consensus 756 vv~~l~~~~~~~~ 768 (785)
|++.|+.+.....
T Consensus 297 ll~~L~~~~~~~~ 309 (317)
T 2buj_A 297 LLSQLEALQPPAP 309 (317)
T ss_dssp HHHHHHHTCCCCC
T ss_pred HHHHhhhcCCCCC
Confidence 9999999876533
No 204
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=98.17 E-value=3.9e-07 Score=102.85 Aligned_cols=86 Identities=20% Similarity=0.282 Sum_probs=59.8
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|+......+.|+|||||||++.||+| |+.|.. +...+.... ++..+. . +-..+.++...|
T Consensus 508 PE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~--------~~~~p~-~---~~~~l~~li~~c 575 (613)
T 2ozo_A 508 PECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGK--------RMECPP-E---CPPELYALMSDC 575 (613)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTTC--------CCCCCT-T---CCHHHHHHHHHT
T ss_pred HhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCC--------CCCCCC-c---CCHHHHHHHHHH
Confidence 466666788999999999999999998 999953 111111100 111111 1 112355778899
Q ss_pred CCCCCCCCCChHHHHHHHHhccccc
Q 003931 743 TSTTPDTRPSMRFVAQELSAKTQAY 767 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~~~~ 767 (785)
++.+|++||+|.+|+++|+.+..+.
T Consensus 576 l~~dP~~RPs~~~l~~~L~~~~~~~ 600 (613)
T 2ozo_A 576 WIYKWEDRPDFLTVEQRMRACYYSL 600 (613)
T ss_dssp TCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred cCCChhHCcCHHHHHHHHHHHHHHh
Confidence 9999999999999999998875543
No 205
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=98.17 E-value=4.3e-07 Score=91.99 Aligned_cols=89 Identities=24% Similarity=0.313 Sum_probs=56.9
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC-CCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ-RLPPPTGQLAEAVVLTINVALACTSTTP 747 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~-~l~~~~~~~~~~~~~~~~ial~C~~~~p 747 (785)
+|.......+.++||||||+++.|++| |+.|...... ......+... ....+. ... ..+.++...|.+.+|
T Consensus 183 PE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~---~~~~~~~~~~~~~~~~~-~~~---~~l~~li~~~l~~~p 255 (281)
T 3cc6_A 183 PESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLEN---KDVIGVLEKGDRLPKPD-LCP---PVLYTLMTRCWDYDP 255 (281)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCG---GGHHHHHHHTCCCCCCT-TCC---HHHHHHHHHHTCSSG
T ss_pred chhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCCh---HHHHHHHhcCCCCCCCC-CCC---HHHHHHHHHHccCCc
Confidence 355555677889999999999999999 9999531110 0000000000 000000 111 124566788999999
Q ss_pred CCCCChHHHHHHHHhccc
Q 003931 748 DTRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 748 ~~Rp~m~~vv~~l~~~~~ 765 (785)
++||++.||++.|+++.+
T Consensus 256 ~~Rps~~ell~~L~~~~~ 273 (281)
T 3cc6_A 256 SDRPRFTELVCSLSDVYQ 273 (281)
T ss_dssp GGSCCHHHHHHHHHHHHH
T ss_pred hhCcCHHHHHHHHHHHHH
Confidence 999999999999988754
No 206
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=98.17 E-value=4.1e-07 Score=91.32 Aligned_cols=85 Identities=25% Similarity=0.388 Sum_probs=57.3
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCch------hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGEL------ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~------~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|.......+.++||||||+++.|++| |+.|.+- ...+... ..+..... .. ..+.++...|
T Consensus 174 PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~------~~~~~~~~--~~----~~l~~li~~~ 241 (267)
T 3t9t_A 174 PEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTG------FRLYKPRL--AS----THVYQIMNHC 241 (267)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTT------CCCCCCTT--SC----HHHHHHHHHH
T ss_pred hhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcC------CcCCCCcc--Cc----HHHHHHHHHH
Confidence 354455667889999999999999999 8888531 1111100 00011000 11 1245677899
Q ss_pred CCCCCCCCCChHHHHHHHHhcccc
Q 003931 743 TSTTPDTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~~~ 766 (785)
.+.+|++||++.|+++.|+++.++
T Consensus 242 l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 242 WRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp TCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ccCChhhCcCHHHHHHHHHHHHhc
Confidence 999999999999999999988653
No 207
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=98.16 E-value=2.1e-07 Score=97.07 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=55.1
Q ss_pred hcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCC-chhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931 675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPT-GQLAEAVVLTINVALACTSTTPDTRPSM 753 (785)
Q Consensus 675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~-~~~~~~~~~~~~ial~C~~~~p~~Rp~m 753 (785)
....+.++|||||||+++|++||+.|.+-.. ..++++....... .... ..+.++...|.+.+|++||++
T Consensus 227 ~~~~~~~~Dv~slG~il~el~~g~~p~~~~~-------~~~~~~~~~~~~~~~~~~---~~~~~li~~~l~~~p~~Rps~ 296 (337)
T 3ll6_A 227 NFPIGEKQDIWALGCILYLLCFRQHPFEDGA-------KLRIVNGKYSIPPHDTQY---TVFHSLIRAMLQVNPEERLSI 296 (337)
T ss_dssp TSCSSHHHHHHHHHHHHHHHHHSSCCC-------------------CCCCTTCCSS---GGGHHHHHHHSCSSGGGSCCH
T ss_pred cCCCChHHhHHHHHHHHHHHHhCCCCCcchh-------HHHhhcCcccCCcccccc---hHHHHHHHHHccCChhhCcCH
Confidence 3456789999999999999999999953110 0111111111000 0000 113456788999999999999
Q ss_pred HHHHHHHHhcccccCCCC
Q 003931 754 RFVAQELSAKTQAYLPEP 771 (785)
Q Consensus 754 ~~vv~~l~~~~~~~~~~~ 771 (785)
.||++.|.++.......+
T Consensus 297 ~e~l~~l~~~~~~~~~~~ 314 (337)
T 3ll6_A 297 AEVVHQLQEIAAARNVNP 314 (337)
T ss_dssp HHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHhccCCCC
Confidence 999999998876544443
No 208
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=98.16 E-value=5e-07 Score=92.37 Aligned_cols=95 Identities=25% Similarity=0.283 Sum_probs=58.8
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCC-chhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPG-ELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~-~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
+|.......+.++||||||+++.|++||+.|- .-.. .......+.............+ .+.++...|.+.+|+
T Consensus 201 PE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~l~~li~~~l~~~p~ 274 (298)
T 3f66_A 201 LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVN---TFDITVYLLQGRRLLQPEYCPD---PLYEVMLKCWHPKAE 274 (298)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSC---TTTHHHHHHTTCCCCCCTTCCH---HHHHHHHHHTCSSGG
T ss_pred hHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCC---HHHHHHHHhcCCCCCCCccCCH---HHHHHHHHHcCCChh
Confidence 35455567788999999999999999976652 1000 0000000000000000001111 245677889999999
Q ss_pred CCCChHHHHHHHHhcccccCCC
Q 003931 749 TRPSMRFVAQELSAKTQAYLPE 770 (785)
Q Consensus 749 ~Rp~m~~vv~~l~~~~~~~~~~ 770 (785)
+||++.||+++|+++...+...
T Consensus 275 ~Rps~~ell~~L~~~~~~~~~~ 296 (298)
T 3f66_A 275 MRPSFSELVSRISAIFSTFIGE 296 (298)
T ss_dssp GSCCHHHHHHHHHHHHHTSCCS
T ss_pred hCcCHHHHHHHHHHHHHhhccC
Confidence 9999999999999987765543
No 209
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=98.16 E-value=1.6e-07 Score=97.49 Aligned_cols=95 Identities=20% Similarity=0.250 Sum_probs=57.7
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCch-----hhhccCc------ccccccccCCCCCCCchhHHHHHHHHHH
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGEL-----ITSLSGE------LFLKDVLDQRLPPPTGQLAEAVVLTINV 738 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~-----~~~~~~~------~~~~~~~d~~l~~~~~~~~~~~~~~~~i 738 (785)
+|+......+.++||||||+++.|++||+.|... ....... ....+.+......... ...-..+.++
T Consensus 199 PE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~l 276 (327)
T 3lxl_A 199 PESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLELLEEGQRLPAP--PACPAEVHEL 276 (327)
T ss_dssp HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHHHHTTCCCCCC--TTCCHHHHHH
T ss_pred HHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHHhhcccCCCCC--CcccHHHHHH
Confidence 3555566678899999999999999999999541 1110000 0011111111110000 0011234567
Q ss_pred HhhcCCCCCCCCCChHHHHHHHHhcccc
Q 003931 739 ALACTSTTPDTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 739 al~C~~~~p~~Rp~m~~vv~~l~~~~~~ 766 (785)
...|.+.+|++||+|.||++.|+++...
T Consensus 277 i~~~l~~dP~~Rps~~ell~~L~~~~~~ 304 (327)
T 3lxl_A 277 MKLCWAPSPQDRPSFSALGPQLDMLWSG 304 (327)
T ss_dssp HHHHTCSSGGGSCCHHHHHHHHHHC---
T ss_pred HHHHcCCChhhCcCHHHHHHHHHHHHhh
Confidence 7889999999999999999999987553
No 210
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=98.16 E-value=6.3e-07 Score=93.47 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=54.3
Q ss_pred cccceeeeehhhhhhhhCCCCCch--------hhhccCcc---cccc-----cccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931 680 DKCDVFSFGVVALEVMMGRHPGEL--------ITSLSGEL---FLKD-----VLDQRLPPPTGQLAEAVVLTINVALACT 743 (785)
Q Consensus 680 ~k~DVYSfGvvlLElltgk~p~~~--------~~~~~~~~---~~~~-----~~d~~l~~~~~~~~~~~~~~~~ial~C~ 743 (785)
.++|||||||++.||+||+.|.+. ........ ...+ ...+..... ....++...+.++...|.
T Consensus 231 ~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~li~~~l 309 (337)
T 3mdy_A 231 IMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNR-WSSDECLRQMGKLMTECW 309 (337)
T ss_dssp HHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGG-GGGSHHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCCchhhhHHHHhhhccCcccccc-chhhHHHHHHHHHHHHhh
Confidence 359999999999999999555321 11110000 0011 111111110 011234455778899999
Q ss_pred CCCCCCCCChHHHHHHHHhcccc
Q 003931 744 STTPDTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 744 ~~~p~~Rp~m~~vv~~l~~~~~~ 766 (785)
+.+|++||++.||++.|+++.+.
T Consensus 310 ~~dP~~Rps~~ell~~L~~l~~~ 332 (337)
T 3mdy_A 310 AHNPASRLTALRVKKTLAKMSES 332 (337)
T ss_dssp CSSGGGSCCHHHHHHHHHHHHHT
T ss_pred hhChhhCCCHHHHHHHHHHHHhh
Confidence 99999999999999999988764
No 211
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=98.15 E-value=5.6e-07 Score=91.66 Aligned_cols=83 Identities=22% Similarity=0.249 Sum_probs=56.4
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCch------hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGEL------ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~------~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|.......+.++||||||+++.|++| |+.|..- ...+.... .+.... .. -..+.++...|
T Consensus 189 PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~------~~~~~~---~~---~~~l~~li~~~ 256 (291)
T 1xbb_A 189 PECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGE------RMGCPA---GC---PREMYDLMNLC 256 (291)
T ss_dssp HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTC------CCCCCT---TC---CHHHHHHHHHH
T ss_pred hHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCC------CCCCCC---CC---CHHHHHHHHHH
Confidence 355556677889999999999999999 9999531 11111100 011111 11 12345677889
Q ss_pred CCCCCCCCCChHHHHHHHHhcc
Q 003931 743 TSTTPDTRPSMRFVAQELSAKT 764 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~ 764 (785)
.+.+|++||++.||+++|+++-
T Consensus 257 l~~dp~~Rps~~~l~~~L~~~~ 278 (291)
T 1xbb_A 257 WTYDVENRPGFAAVELRLRNYY 278 (291)
T ss_dssp TCSSTTTSCCHHHHHHHHHHHH
T ss_pred cCCChhhCcCHHHHHHHHHHHH
Confidence 9999999999999999998763
No 212
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.15 E-value=3.8e-07 Score=85.61 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=21.7
Q ss_pred ccccCCCCCeEec--CCCcCccC----CCccccccCCCcEEeCCCCcCc
Q 003931 555 SISNLTELAYLDL--SNNKLTGD----VPQELGRFDKLLSLNLSHNDLS 597 (785)
Q Consensus 555 ~~~~l~~L~~L~L--s~n~l~~~----~p~~l~~l~~L~~L~ls~N~l~ 597 (785)
.+...+.|++|++ ++|.+... +...+...++|+.|++++|.+.
T Consensus 116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3444455555555 44555421 2223344456666666666653
No 213
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=98.15 E-value=3.9e-07 Score=96.01 Aligned_cols=88 Identities=25% Similarity=0.319 Sum_probs=57.6
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchh---hhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELI---TSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTST 745 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~---~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~ 745 (785)
+|+......+.++|||||||+++|++| |+.|..-. ..+.. ...+-..+.... ... ..+.++...|.+.
T Consensus 264 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~--~~~~~~~~~~~~---~~~---~~l~~li~~~l~~ 335 (359)
T 3vhe_A 264 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCR--RLKEGTRMRAPD---YTT---PEMYQTMLDCWHG 335 (359)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHH--HHHHTCCCCCCT---TCC---HHHHHHHHHHTCS
T ss_pred hhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHH--HHHcCCCCCCCC---CCC---HHHHHHHHHHccC
Confidence 465566778899999999999999999 99985310 00000 000000011111 111 1245667889999
Q ss_pred CCCCCCChHHHHHHHHhccc
Q 003931 746 TPDTRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 746 ~p~~Rp~m~~vv~~l~~~~~ 765 (785)
+|++||+|.||++.|+++.+
T Consensus 336 dP~~Rps~~ell~~L~~~~~ 355 (359)
T 3vhe_A 336 EPSQRPTFSELVEHLGNLLQ 355 (359)
T ss_dssp SGGGSCCHHHHHHHHHHHHH
T ss_pred ChhhCCCHHHHHHHHHHHHH
Confidence 99999999999999988754
No 214
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=98.15 E-value=1.3e-07 Score=103.11 Aligned_cols=96 Identities=11% Similarity=0.140 Sum_probs=57.9
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchh-HHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQL-AEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~-~~~~~~~~~ial~C~~~~p~ 748 (785)
+|+......+.++||||||||++||+||+.|..-............+.+..+....... ...-..+.++...|.+.+|+
T Consensus 182 PE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~cl~~dP~ 261 (483)
T 3sv0_A 182 VNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSIEALCRGYPTEFASYFHYCRSLRFD 261 (483)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHHHTCCTT
T ss_pred HHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccHHHHhcCCcHHHHHHHHHHhcCChh
Confidence 35555566788999999999999999999995311000000000011110000000000 00012356778899999999
Q ss_pred CCCChHHHHHHHHhccc
Q 003931 749 TRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 749 ~Rp~m~~vv~~l~~~~~ 765 (785)
+||+|.+|+++|+++..
T Consensus 262 ~RPs~~el~~~L~~l~~ 278 (483)
T 3sv0_A 262 DKPDYSYLKRLFRDLFI 278 (483)
T ss_dssp CCCCHHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHH
Confidence 99999999999988744
No 215
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=98.15 E-value=6.1e-07 Score=94.73 Aligned_cols=95 Identities=27% Similarity=0.311 Sum_probs=59.5
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCC-CCchhhhccCcccccccccC-CCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRH-PGELITSLSGELFLKDVLDQ-RLPPPTGQLAEAVVLTINVALACTSTTP 747 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~-p~~~~~~~~~~~~~~~~~d~-~l~~~~~~~~~~~~~~~~ial~C~~~~p 747 (785)
+|.......+.++|||||||++.|++||++ |..-... ......+... ....+. .. -..+.++...|++.+|
T Consensus 265 PE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~---~~~~~~~~~~~~~~~p~-~~---~~~l~~li~~cl~~dp 337 (373)
T 3c1x_A 265 LESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNT---FDITVYLLQGRRLLQPE-YC---PDPLYEVMLKCWHPKA 337 (373)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCS---SCHHHHHHTTCCCCCCT-TC---CHHHHHHHHHHTCSSG
T ss_pred hHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCH---HHHHHHHHcCCCCCCCC-CC---CHHHHHHHHHHcCCCh
Confidence 355556778899999999999999999544 4320000 0000000000 000010 11 1234567789999999
Q ss_pred CCCCChHHHHHHHHhcccccCCCC
Q 003931 748 DTRPSMRFVAQELSAKTQAYLPEP 771 (785)
Q Consensus 748 ~~Rp~m~~vv~~l~~~~~~~~~~~ 771 (785)
++||++.||++.|+++...+....
T Consensus 338 ~~RPs~~ell~~L~~i~~~~~~~~ 361 (373)
T 3c1x_A 338 EMRPSFSELVSRISAIFSTFIGEH 361 (373)
T ss_dssp GGSCCHHHHHHHHHHHHHTCCSCC
T ss_pred hhCcCHHHHHHHHHHHHHhccccc
Confidence 999999999999999877665443
No 216
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=98.14 E-value=3.7e-07 Score=95.53 Aligned_cols=93 Identities=24% Similarity=0.248 Sum_probs=58.5
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
+|.......+.++|||||||++.|++| |+.|..-... ......+.+.......... -..+.++...|.+.+|+
T Consensus 245 PE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~~p~ 318 (343)
T 1luf_A 245 PESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAH---EEVIYYVRDGNILACPENC---PLELYNLMRLCWSKLPA 318 (343)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH---HHHHHHHHTTCCCCCCTTC---CHHHHHHHHHHTCSSGG
T ss_pred hhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCCh---HHHHHHHhCCCcCCCCCCC---CHHHHHHHHHHcccCcc
Confidence 355556678899999999999999999 9988531000 0000011111111000011 12345677899999999
Q ss_pred CCCChHHHHHHHHhcccccC
Q 003931 749 TRPSMRFVAQELSAKTQAYL 768 (785)
Q Consensus 749 ~Rp~m~~vv~~l~~~~~~~~ 768 (785)
+||++.||++.|+++.+.+.
T Consensus 319 ~Rps~~~~~~~L~~~~~~~~ 338 (343)
T 1luf_A 319 DRPSFCSIHRILQRMCERAE 338 (343)
T ss_dssp GSCCHHHHHHHHHHTTC---
T ss_pred cCCCHHHHHHHHHHHHhhhh
Confidence 99999999999999876543
No 217
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=98.14 E-value=4.8e-07 Score=91.50 Aligned_cols=86 Identities=24% Similarity=0.328 Sum_probs=57.9
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|.......+.++||||||+++.|++| |+.|.. +...+... ..+.... ... ..+.++...|
T Consensus 179 PE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~------~~~~~~~---~~~---~~l~~li~~~ 246 (279)
T 1qpc_A 179 PEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERG------YRMVRPD---NCP---EELYQLMRLC 246 (279)
T ss_dssp HHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT------CCCCCCT---TCC---HHHHHHHHHH
T ss_pred hhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcc------cCCCCcc---ccc---HHHHHHHHHH
Confidence 355555677899999999999999999 888853 11111110 0011100 111 2345677889
Q ss_pred CCCCCCCCCChHHHHHHHHhccccc
Q 003931 743 TSTTPDTRPSMRFVAQELSAKTQAY 767 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~~~~ 767 (785)
.+.+|++||+|.+++++|+++....
T Consensus 247 l~~~p~~Rps~~~l~~~l~~~~~~~ 271 (279)
T 1qpc_A 247 WKERPEDRPTFDYLRSVLEDFFTAT 271 (279)
T ss_dssp TCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred hccChhhCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999998876544
No 218
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=98.13 E-value=5.9e-07 Score=91.85 Aligned_cols=94 Identities=28% Similarity=0.338 Sum_probs=58.6
Q ss_pred hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCC-CCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRL-PPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
|.......+.++||||||++++|++||+.|-.-.. ......+.+.... ........ ..+.++...|.+.+|++
T Consensus 198 E~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~~p~~ 271 (298)
T 3pls_A 198 ESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHI---DPFDLTHFLAQGRRLPQPEYCP---DSLYQVMQQCWEADPAV 271 (298)
T ss_dssp HHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTS---CGGGHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSGGG
T ss_pred hhhccCCCChhhchhhHHHHHHHHhhCCCCCCccC---CHHHHHHHhhcCCCCCCCccch---HHHHHHHHHHccCChhh
Confidence 44455667889999999999999999877731000 0000000000000 00000111 13456778999999999
Q ss_pred CCChHHHHHHHHhcccccCCC
Q 003931 750 RPSMRFVAQELSAKTQAYLPE 770 (785)
Q Consensus 750 Rp~m~~vv~~l~~~~~~~~~~ 770 (785)
||++.+|+++|+++.......
T Consensus 272 Rps~~~ll~~l~~~~~~l~~~ 292 (298)
T 3pls_A 272 RPTFRVLVGEVEQIVSALLGD 292 (298)
T ss_dssp SCCHHHHHHHHHHHHHHCCSC
T ss_pred CcCHHHHHHHHHHHHHHHhcc
Confidence 999999999999987765443
No 219
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=98.13 E-value=6.4e-07 Score=94.58 Aligned_cols=91 Identities=21% Similarity=0.280 Sum_probs=57.4
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
+|+......+.++|||||||++.||+| |+.|..-... ......+........... +-..+.++...|.+.+|+
T Consensus 274 PE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~l~~li~~~l~~dP~ 347 (370)
T 2psq_A 274 PEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV---EELFKLLKEGHRMDKPAN---CTNELYMMMRDCWHAVPS 347 (370)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG---GGHHHHHHTTCCCCCCTT---SCHHHHHHHHHHTCSSGG
T ss_pred HhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCH---HHHHHHHhcCCCCCCCCC---CCHHHHHHHHHHcCCChh
Confidence 355556678899999999999999999 8888531000 000000000000000001 112345667789999999
Q ss_pred CCCChHHHHHHHHhcccc
Q 003931 749 TRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 749 ~Rp~m~~vv~~l~~~~~~ 766 (785)
+||++.||++.|+++...
T Consensus 348 ~Rpt~~ell~~L~~il~~ 365 (370)
T 2psq_A 348 QRPTFKQLVEDLDRILTL 365 (370)
T ss_dssp GSCCHHHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHHH
Confidence 999999999999987543
No 220
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=98.13 E-value=7.7e-07 Score=90.41 Aligned_cols=82 Identities=23% Similarity=0.359 Sum_probs=52.3
Q ss_pred cccccccceeeeehhhhhhhhCCCCCchhhhccC---cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG---ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS 752 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~---~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~ 752 (785)
...+.++|||||||++.|++||+.|.+-...... ......-..+...... -..+.++...|.+.+|++||+
T Consensus 203 ~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~li~~~l~~dp~~Rps 276 (287)
T 4f0f_A 203 ESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGLRPTIPEDC------PPRLRNVIELCWSGDPKKRPH 276 (287)
T ss_dssp CEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCCCCCCCTTS------CHHHHHHHHHHTCSSGGGSCC
T ss_pred CCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCCCCCCCccc------CHHHHHHHHHHhcCChhhCcC
Confidence 4467899999999999999999999541100000 0000001111111111 123456778899999999999
Q ss_pred hHHHHHHHHhc
Q 003931 753 MRFVAQELSAK 763 (785)
Q Consensus 753 m~~vv~~l~~~ 763 (785)
+.||+++|+++
T Consensus 277 ~~~ll~~L~~l 287 (287)
T 4f0f_A 277 FSYIVKELSEL 287 (287)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhC
Confidence 99999999864
No 221
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=98.13 E-value=3.7e-07 Score=96.39 Aligned_cols=84 Identities=21% Similarity=0.302 Sum_probs=57.3
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|+......+.++|||||||++.||+| |+.|.. +...+..... +.... .. -..+.++...|
T Consensus 255 PE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~~------~~~~~---~~---~~~l~~li~~~ 322 (367)
T 3l9p_A 255 PEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGR------MDPPK---NC---PGPVYRIMTQC 322 (367)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCC------CCCCT---TC---CHHHHHHHHHH
T ss_pred HHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCC------CCCCc---cC---CHHHHHHHHHH
Confidence 355556678899999999999999998 888853 1111111100 00000 11 12345678899
Q ss_pred CCCCCCCCCChHHHHHHHHhccc
Q 003931 743 TSTTPDTRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~~ 765 (785)
.+.+|++||+|.||++.|+.+..
T Consensus 323 l~~dP~~Rps~~eil~~l~~~~~ 345 (367)
T 3l9p_A 323 WQHQPEDRPNFAIILERIEYCTQ 345 (367)
T ss_dssp TCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cCCCHhHCcCHHHHHHHHHHHhh
Confidence 99999999999999999987754
No 222
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=98.13 E-value=8.2e-07 Score=90.30 Aligned_cols=88 Identities=24% Similarity=0.355 Sum_probs=53.1
Q ss_pred hhhhh-cccccccceeeeehhhhhhhhCCCCC-chhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 671 ELAVT-MRVTDKCDVFSFGVVALEVMMGRHPG-ELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 671 e~~~~-~~~t~k~DVYSfGvvlLElltgk~p~-~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
|.... ...+.++|||||||++.|++||+.|- .-........... ..+.+..... ..+.++...|.+.+|+
T Consensus 187 E~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~l~~li~~~l~~dp~ 258 (289)
T 4fvq_A 187 ECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYE--DRHQLPAPKA------AELANLINNCMDYEPD 258 (289)
T ss_dssp HHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHH--TTCCCCCCSS------CTTHHHHHHHSCSSGG
T ss_pred HHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhh--ccCCCCCCCC------HHHHHHHHHHcCCChh
Confidence 44333 56788999999999999999976652 1000000000000 0001111000 1134567789999999
Q ss_pred CCCChHHHHHHHHhcccc
Q 003931 749 TRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 749 ~Rp~m~~vv~~l~~~~~~ 766 (785)
+||++.||++.|+++-.+
T Consensus 259 ~Rps~~~ll~~l~~l~~p 276 (289)
T 4fvq_A 259 HRPSFRAIIRDLNSLFTP 276 (289)
T ss_dssp GSCCHHHHHHHHHTCC--
T ss_pred HCcCHHHHHHHHHHhcCC
Confidence 999999999999988654
No 223
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.12 E-value=4.1e-07 Score=89.64 Aligned_cols=80 Identities=28% Similarity=0.369 Sum_probs=58.1
Q ss_pred hcccccceeccccceeee--ccCcchhccccCCeeecccCccccCCCcccccCC--CCCeecccCCcccCcCCc------
Q 003931 485 GECRNLSNLQLDRNRISG--GIPAELGNLTRLGVLSLDSNELTGKIPTDLGKLV--KLFNLNLSNNHLTGEIPK------ 554 (785)
Q Consensus 485 ~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~ls~n~l~~~~p~------ 554 (785)
..+++|+.|+|++|+|++ .+|..+..+++|+.|+|++|++++. ..+..+. +|++|++++|.+.+.+|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456778888888888876 4456677888888888888888754 3344444 888999999988876552
Q ss_pred -ccccCCCCCeEe
Q 003931 555 -SISNLTELAYLD 566 (785)
Q Consensus 555 -~~~~l~~L~~L~ 566 (785)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 356677777776
No 224
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=98.12 E-value=6.7e-07 Score=92.75 Aligned_cols=88 Identities=23% Similarity=0.295 Sum_probs=57.1
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCC-CCchhHHHHHHHHHHHhhcCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPP-PTGQLAEAVVLTINVALACTSTTP 747 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~-~~~~~~~~~~~~~~ial~C~~~~p 747 (785)
+|.......+.++|||||||++.|++| |+.|.+-... ....+.+...... ..... -..+.++...|.+.+|
T Consensus 188 PE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp 260 (327)
T 3lzb_A 188 LESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPA----SEISSILEKGERLPQPPIC---TIDVYMIMRKCWMIDA 260 (327)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG----GGHHHHHHTTCCCCCCTTB---CHHHHHHHHHHTCSSG
T ss_pred HHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCH----HHHHHHHHcCCCCCCCccC---CHHHHHHHHHHcCCCh
Confidence 355556677889999999999999999 9999541100 0011111111000 00011 1234567788999999
Q ss_pred CCCCChHHHHHHHHhcc
Q 003931 748 DTRPSMRFVAQELSAKT 764 (785)
Q Consensus 748 ~~Rp~m~~vv~~l~~~~ 764 (785)
++||+|.||++.|+++.
T Consensus 261 ~~Rps~~ell~~L~~~~ 277 (327)
T 3lzb_A 261 DSRPKFRELIIEFSKMA 277 (327)
T ss_dssp GGSCCHHHHHHHHHHHH
T ss_pred hHCcCHHHHHHHHHHHH
Confidence 99999999999998775
No 225
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=98.12 E-value=7.2e-07 Score=98.13 Aligned_cols=88 Identities=24% Similarity=0.319 Sum_probs=58.0
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCC--CCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQR--LPPPTGQLAEAVVLTINVALACTSTT 746 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~--l~~~~~~~~~~~~~~~~ial~C~~~~ 746 (785)
+|.......+.|+|||||||++.||+| |+.|..-... ....+.+... +..+. . +-..+.++...|.+.+
T Consensus 388 PE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~----~~~~~~~~~~~~~~~~~-~---~~~~l~~li~~cl~~d 459 (495)
T 1opk_A 388 PESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL----SQVYELLEKDYRMERPE-G---CPEKVYELMRACWQWN 459 (495)
T ss_dssp HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG----GGHHHHHHTTCCCCCCT-T---CCHHHHHHHHHHTCSS
T ss_pred HhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCH----HHHHHHHHcCCCCCCCC-C---CCHHHHHHHHHHcCcC
Confidence 355556678899999999999999999 8888531100 0011111111 11111 1 1123456778999999
Q ss_pred CCCCCChHHHHHHHHhccc
Q 003931 747 PDTRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 747 p~~Rp~m~~vv~~l~~~~~ 765 (785)
|++||+|.+|+++|+.+..
T Consensus 460 P~~RPs~~el~~~L~~~~~ 478 (495)
T 1opk_A 460 PSDRPSFAEIHQAFETMFQ 478 (495)
T ss_dssp GGGSCCHHHHHHHHHTSCS
T ss_pred hhHCcCHHHHHHHHHHHHh
Confidence 9999999999999988754
No 226
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=98.12 E-value=9.2e-07 Score=90.03 Aligned_cols=86 Identities=24% Similarity=0.386 Sum_probs=56.8
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|+......+.++||||||++++|++| |+.|.. +...+.... ....... .. -..+.++...|
T Consensus 193 PE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~-------~~~~~~~-~~---~~~l~~li~~~ 261 (291)
T 1u46_A 193 PESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEG-------ERLPRPE-DC---PQDIYNVMVQC 261 (291)
T ss_dssp HHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSC-------CCCCCCT-TC---CHHHHHHHHHH
T ss_pred chhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccC-------CCCCCCc-Cc---CHHHHHHHHHH
Confidence 355555667899999999999999999 999853 111111100 0000000 11 12345677889
Q ss_pred CCCCCCCCCChHHHHHHHHhcccc
Q 003931 743 TSTTPDTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~~~ 766 (785)
.+.+|++||++.+|++.|+++...
T Consensus 262 l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 262 WAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp TCSSGGGSCCHHHHHHHHHHHC--
T ss_pred ccCCcccCcCHHHHHHHHHHhCcc
Confidence 999999999999999999987654
No 227
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=98.12 E-value=7.8e-07 Score=92.53 Aligned_cols=89 Identities=26% Similarity=0.389 Sum_probs=56.9
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC-CCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ-RLPPPTGQLAEAVVLTINVALACTSTTP 747 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~-~l~~~~~~~~~~~~~~~~ial~C~~~~p 747 (785)
+|.......+.++|||||||++.|++| |+.|..-... ......+.+. ....+. .. -..+.++...|++.+|
T Consensus 219 PE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~---~~~~~~~~~~~~~~~~~-~~---~~~l~~li~~~l~~~p 291 (333)
T 1mqb_A 219 PEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN---HEVMKAINDGFRLPTPM-DC---PSAIYQLMMQCWQQER 291 (333)
T ss_dssp HHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH---HHHHHHHHTTCCCCCCT-TC---BHHHHHHHHHHTCSST
T ss_pred chhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCH---HHHHHHHHCCCcCCCcc-cC---CHHHHHHHHHHcCCCh
Confidence 355455667889999999999999999 9998531000 0000001111 010010 11 1234567889999999
Q ss_pred CCCCChHHHHHHHHhccc
Q 003931 748 DTRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 748 ~~Rp~m~~vv~~l~~~~~ 765 (785)
++||+|.||+++|+++..
T Consensus 292 ~~Rps~~~l~~~L~~~~~ 309 (333)
T 1mqb_A 292 ARRPKFADIVSILDKLIR 309 (333)
T ss_dssp TTSCCHHHHHHHHHHHHH
T ss_pred hhCcCHHHHHHHHHHHHh
Confidence 999999999999987643
No 228
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=98.11 E-value=1.3e-07 Score=98.27 Aligned_cols=96 Identities=9% Similarity=0.063 Sum_probs=57.5
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+-.....+.++|||||||++.|++||+.|..-............+.+.....+........-.+.++...|.+.+|.+
T Consensus 186 PE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~~li~~~l~~~p~~ 265 (330)
T 2izr_A 186 INTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEVLCENFPEMATYLRYVRRLDFFE 265 (330)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHSCHHHHTTTCHHHHHHHHHHHHCCTTC
T ss_pred hHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccCCHHHHhccChHHHHHHHHHHhCCCCC
Confidence 35555566788999999999999999999995311000000000001010000000000000115667788899999999
Q ss_pred CCChHHHHHHHHhccc
Q 003931 750 RPSMRFVAQELSAKTQ 765 (785)
Q Consensus 750 Rp~m~~vv~~l~~~~~ 765 (785)
||++.+|++.|+++..
T Consensus 266 RP~~~~l~~~l~~~~~ 281 (330)
T 2izr_A 266 KPDYDYLRKLFTDLFD 281 (330)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999987643
No 229
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=98.11 E-value=7.2e-07 Score=90.43 Aligned_cols=90 Identities=19% Similarity=0.331 Sum_probs=57.2
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
+|.......+.++||||||+++.|++| |+.|.+-.........+.+...+..... .. ..+.++...|.+.+|+
T Consensus 190 PE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~l~~li~~~l~~~p~ 263 (283)
T 3gen_A 190 PEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHL--AS----EKVYTIMYSCWHEKAD 263 (283)
T ss_dssp HHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTT--CC----HHHHHHHHHTTCSSGG
T ss_pred HHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcccCCCCCCc--CC----HHHHHHHHHHccCChh
Confidence 355555677889999999999999999 9998541100000000000011111110 11 1245677899999999
Q ss_pred CCCChHHHHHHHHhccc
Q 003931 749 TRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 749 ~Rp~m~~vv~~l~~~~~ 765 (785)
+||++.||++.|.++..
T Consensus 264 ~Rps~~~ll~~L~~~~~ 280 (283)
T 3gen_A 264 ERPTFKILLSNILDVMD 280 (283)
T ss_dssp GSCCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHhh
Confidence 99999999999988754
No 230
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=98.10 E-value=5.8e-07 Score=91.14 Aligned_cols=89 Identities=12% Similarity=0.173 Sum_probs=57.1
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|.......+.++||||||++++|++||+.|..-.... ..++.+..+..... .. +.++...|.+.+|++
T Consensus 190 PE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~---~~---~~~li~~~l~~dp~~ 258 (284)
T 2a19_B 190 PEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKF-----FTDLRDGIISDIFD---KK---EKTLLQKLLSKKPED 258 (284)
T ss_dssp HHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHH-----HHHHHTTCCCTTSC---HH---HHHHHHHHTCSSGGG
T ss_pred hhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHHH-----HHHhhcccccccCC---HH---HHHHHHHHccCChhh
Confidence 35555566789999999999999999999885311000 00111111111111 11 335667899999999
Q ss_pred CCChHHHHHHHHhcccccCC
Q 003931 750 RPSMRFVAQELSAKTQAYLP 769 (785)
Q Consensus 750 Rp~m~~vv~~l~~~~~~~~~ 769 (785)
||++.||++.|..++.....
T Consensus 259 Rps~~e~l~~l~~~~~~~~~ 278 (284)
T 2a19_B 259 RPNTSEILRTLTVWKKSPEK 278 (284)
T ss_dssp SCCHHHHHHHHHHHTC----
T ss_pred CcCHHHHHHHHHHHhhCCCc
Confidence 99999999999988765433
No 231
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=98.10 E-value=7.5e-07 Score=91.82 Aligned_cols=89 Identities=24% Similarity=0.304 Sum_probs=57.2
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCC-CCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRL-PPPTGQLAEAVVLTINVALACTSTTP 747 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l-~~~~~~~~~~~~~~~~ial~C~~~~p 747 (785)
+|.......+.++||||||+++.|++| |+.|..-... ....+.+.... ........ ..+.++...|.+.+|
T Consensus 221 PE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~l~~dp 293 (314)
T 2ivs_A 221 IESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP----ERLFNLLKTGHRMERPDNCS---EEMYRLMLQCWKQEP 293 (314)
T ss_dssp HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG----GGHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSG
T ss_pred hhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH----HHHHHHhhcCCcCCCCccCC---HHHHHHHHHHccCCh
Confidence 355556678899999999999999999 9988531100 00001110000 00000111 234567789999999
Q ss_pred CCCCChHHHHHHHHhccc
Q 003931 748 DTRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 748 ~~Rp~m~~vv~~l~~~~~ 765 (785)
++||++.||++.|+++..
T Consensus 294 ~~Rps~~~l~~~l~~~~~ 311 (314)
T 2ivs_A 294 DKRPVFADISKDLEKMMV 311 (314)
T ss_dssp GGSCCHHHHHHHHHHHHH
T ss_pred hhCcCHHHHHHHHHHHHh
Confidence 999999999999988754
No 232
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=98.10 E-value=6.7e-07 Score=92.16 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=57.8
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTP 747 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p 747 (785)
+|.......+.++||||||+++.|++| |+.|..-...... .....+...+.... ... ..+.++...|.+.+|
T Consensus 216 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~l~~li~~~l~~dp 289 (313)
T 1t46_A 216 PESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPE---HAP---AEMYDIMKTCWDADP 289 (313)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCT---TSC---HHHHHHHHHHTCSSG
T ss_pred hHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHHHHHhccCCCCCCcc---cCC---HHHHHHHHHHcCCCc
Confidence 355556678899999999999999999 8888531100000 00000111111111 111 234566789999999
Q ss_pred CCCCChHHHHHHHHhcccc
Q 003931 748 DTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 748 ~~Rp~m~~vv~~l~~~~~~ 766 (785)
++||++.||+++|+++...
T Consensus 290 ~~Rps~~ell~~L~~~~~~ 308 (313)
T 1t46_A 290 LKRPTFKQIVQLIEKQISE 308 (313)
T ss_dssp GGSCCHHHHHHHHHHHHHH
T ss_pred hhCcCHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 233
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=98.10 E-value=5.7e-07 Score=99.92 Aligned_cols=89 Identities=26% Similarity=0.434 Sum_probs=60.2
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|.......+.|+|||||||++.||+| |+.|.. +...+.... ++..+. . +-..+.++...|
T Consensus 433 PE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~~--------~~~~~~-~---~~~~l~~li~~c 500 (535)
T 2h8h_A 433 PEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGY--------RMPCPP-E---CPESLHDLMCQC 500 (535)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTTC--------CCCCCT-T---CCHHHHHHHHHH
T ss_pred HHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCC--------CCCCCC-C---CCHHHHHHHHHH
Confidence 355556678899999999999999999 888853 111111110 111000 1 112345677899
Q ss_pred CCCCCCCCCChHHHHHHHHhcccccCCC
Q 003931 743 TSTTPDTRPSMRFVAQELSAKTQAYLPE 770 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~~~~~~~ 770 (785)
++.+|++||+|.+|+++|+++.....++
T Consensus 501 l~~dP~~RPt~~~l~~~L~~~~~~~~~~ 528 (535)
T 2h8h_A 501 WRKEPEERPTFEYLQAFLEDYFTSTEPQ 528 (535)
T ss_dssp TCSSGGGSCCHHHHHHHHHTSSCCCSCS
T ss_pred cCCChhHCcCHHHHHHHHHHHhhccCcc
Confidence 9999999999999999999886654443
No 234
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=98.09 E-value=7.7e-07 Score=91.70 Aligned_cols=90 Identities=20% Similarity=0.273 Sum_probs=56.9
Q ss_pred hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
|.......+.++||||||++++|++| |+.|..-... ......+........... .-..+.++...|.+.+|++
T Consensus 219 E~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~l~~li~~~l~~dp~~ 292 (313)
T 3brb_A 219 ESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQN---HEMYDYLLHGHRLKQPED---CLDELYEIMYSCWRTDPLD 292 (313)
T ss_dssp HHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG---GGHHHHHHTTCCCCCBTT---CCHHHHHHHHHTTCSSGGG
T ss_pred hhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCH---HHHHHHHHcCCCCCCCcc---ccHHHHHHHHHHcCCChhh
Confidence 44445667889999999999999999 7777531100 000000111100000001 1123456778999999999
Q ss_pred CCChHHHHHHHHhcccc
Q 003931 750 RPSMRFVAQELSAKTQA 766 (785)
Q Consensus 750 Rp~m~~vv~~l~~~~~~ 766 (785)
||++.+|++.|+++...
T Consensus 293 Rps~~~l~~~L~~l~~~ 309 (313)
T 3brb_A 293 RPTFSVLRLQLEKLLES 309 (313)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999988654
No 235
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=98.09 E-value=7.9e-07 Score=90.01 Aligned_cols=90 Identities=21% Similarity=0.290 Sum_probs=56.4
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
+|.......+.++||||||+++.|++| |+.|.+-... ......+.+........... ..+.++...|.+.+|+
T Consensus 186 PE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~---~~~~~~i~~~~~~~~~~~~~---~~l~~li~~~l~~~p~ 259 (281)
T 1mp8_A 186 PESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKN---NDVIGRIENGERLPMPPNCP---PTLYSLMTKCWAYDPS 259 (281)
T ss_dssp HHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCG---GGHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSGG
T ss_pred hhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCH---HHHHHHHHcCCCCCCCCCCC---HHHHHHHHHHccCChh
Confidence 354455667889999999999999997 8888531100 00000111100000000111 2244667889999999
Q ss_pred CCCChHHHHHHHHhccc
Q 003931 749 TRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 749 ~Rp~m~~vv~~l~~~~~ 765 (785)
+||++.||++.|+++..
T Consensus 260 ~Rps~~~l~~~l~~~~~ 276 (281)
T 1mp8_A 260 RRPRFTELKAQLSTILE 276 (281)
T ss_dssp GSCCHHHHHHHHHHHHH
T ss_pred hCcCHHHHHHHHHHHHH
Confidence 99999999999988754
No 236
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=98.08 E-value=7.5e-07 Score=90.51 Aligned_cols=86 Identities=20% Similarity=0.287 Sum_probs=58.1
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|+......+.++||||||++++|++| |+.|.. +...+.... .+.... ... ..+.++...|
T Consensus 182 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~~~------~~~~~~---~~~---~~l~~li~~~ 249 (287)
T 1u59_A 182 PECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGK------RMECPP---ECP---PELYALMSDC 249 (287)
T ss_dssp HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTC------CCCCCT---TCC---HHHHHHHHHT
T ss_pred HHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhcCC------cCCCCC---CcC---HHHHHHHHHH
Confidence 355555678899999999999999999 999953 111111100 011111 111 2345677899
Q ss_pred CCCCCCCCCChHHHHHHHHhccccc
Q 003931 743 TSTTPDTRPSMRFVAQELSAKTQAY 767 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~~~~ 767 (785)
.+.+|++||++.||++.|.++..+.
T Consensus 250 l~~~p~~Rps~~~l~~~l~~~~~~~ 274 (287)
T 1u59_A 250 WIYKWEDRPDFLTVEQRMRACYYSL 274 (287)
T ss_dssp TCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred cCCChhhCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999998875443
No 237
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=98.07 E-value=1.1e-06 Score=91.10 Aligned_cols=90 Identities=22% Similarity=0.280 Sum_probs=57.3
Q ss_pred hhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 671 ELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 671 e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
|.......+.++|||||||++.|++| |+.|.+-... ......+............ ...+.++...|.+.+|++
T Consensus 209 E~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~ 282 (323)
T 3qup_A 209 ESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIEN---AEIYNYLIGGNRLKQPPEC---MEEVYDLMYQCWSADPKQ 282 (323)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG---GGHHHHHHTTCCCCCCTTC---CHHHHHHHHHTTCSSGGG
T ss_pred hhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccCh---HHHHHHHhcCCCCCCCCcc---CHHHHHHHHHHccCChhh
Confidence 44455667899999999999999999 8888531100 0000011111100000011 123557788999999999
Q ss_pred CCChHHHHHHHHhcccc
Q 003931 750 RPSMRFVAQELSAKTQA 766 (785)
Q Consensus 750 Rp~m~~vv~~l~~~~~~ 766 (785)
||++.+|++.|+++-..
T Consensus 283 Rps~~~l~~~l~~~l~~ 299 (323)
T 3qup_A 283 RPSFTCLRMELENILGH 299 (323)
T ss_dssp SCCHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHHH
Confidence 99999999999987543
No 238
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=98.06 E-value=1.1e-06 Score=91.22 Aligned_cols=92 Identities=21% Similarity=0.170 Sum_probs=58.1
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
+|+......+.++||||||+++.|++| |+.|..-.........+..-..+.... ... ..+.++...|.+.+|+
T Consensus 210 PE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~~~~~~~~---~~~---~~l~~li~~~l~~dp~ 283 (327)
T 1fvr_A 210 IESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPL---NCD---DEVYDLMRQCWREKPY 283 (327)
T ss_dssp HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCCCCCT---TBC---HHHHHHHHHHTCSSGG
T ss_pred hhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhhcCCCCCCCC---CCC---HHHHHHHHHHccCChh
Confidence 355555667899999999999999999 999953110000000000000111111 111 1244667889999999
Q ss_pred CCCChHHHHHHHHhccccc
Q 003931 749 TRPSMRFVAQELSAKTQAY 767 (785)
Q Consensus 749 ~Rp~m~~vv~~l~~~~~~~ 767 (785)
+||++.||++.|.++....
T Consensus 284 ~Rps~~ell~~L~~~~~~~ 302 (327)
T 1fvr_A 284 ERPSFAQILVSLNRMLEER 302 (327)
T ss_dssp GSCCHHHHHHHHHHHHHSS
T ss_pred hCcCHHHHHHHHHHHHHhh
Confidence 9999999999998875543
No 239
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=98.05 E-value=8.1e-07 Score=92.46 Aligned_cols=89 Identities=20% Similarity=0.302 Sum_probs=56.8
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCC--CCCchhHHHHHHHHHHHhhcCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLP--PPTGQLAEAVVLTINVALACTSTT 746 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~--~~~~~~~~~~~~~~~ial~C~~~~ 746 (785)
+|.......+.++|||||||++.|++| |+.|.+-... .....+++..... .+. ... ..+.++...|.+.+
T Consensus 235 PE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~-~~~---~~l~~li~~~l~~~ 307 (333)
T 2i1m_A 235 PESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILV---NSKFYKLVKDGYQMAQPA-FAP---KNIYSIMQACWALE 307 (333)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCS---SHHHHHHHHHTCCCCCCT-TCC---HHHHHHHHHHTCSS
T ss_pred HHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccch---hHHHHHHHhcCCCCCCCC-CCC---HHHHHHHHHHhccC
Confidence 355556678899999999999999999 8888531000 0000011110000 000 001 23456778899999
Q ss_pred CCCCCChHHHHHHHHhccc
Q 003931 747 PDTRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 747 p~~Rp~m~~vv~~l~~~~~ 765 (785)
|++||++.||++.|+++..
T Consensus 308 p~~Rps~~~l~~~L~~~~~ 326 (333)
T 2i1m_A 308 PTHRPTFQQICSFLQEQAQ 326 (333)
T ss_dssp GGGSCCHHHHHHHHHHHHH
T ss_pred hhhCcCHHHHHHHHHHHHH
Confidence 9999999999999988754
No 240
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=98.05 E-value=8e-07 Score=91.90 Aligned_cols=85 Identities=14% Similarity=0.210 Sum_probs=51.5
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+......+.++|||||||+++|++||+.|..-......-..+.+...+.+.... .... .+.++...|.+.+|++
T Consensus 210 PE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~l~~li~~~l~~dp~~ 285 (321)
T 2c30_A 210 PEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDSPPPKLKNSH-KVSP---VLRDFLERMLVRDPQE 285 (321)
T ss_dssp HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCTTGG-GSCH---HHHHHHHHHSCSSTTT
T ss_pred HhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcCCCCCcCccc-cCCH---HHHHHHHHHccCChhh
Confidence 45555667889999999999999999999995310000000001111111111100 1111 2345667899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||+|.||++
T Consensus 286 Rps~~ell~ 294 (321)
T 2c30_A 286 RATAQELLD 294 (321)
T ss_dssp SCCHHHHHT
T ss_pred CcCHHHHhc
Confidence 999999965
No 241
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=98.04 E-value=9.7e-07 Score=91.89 Aligned_cols=85 Identities=22% Similarity=0.325 Sum_probs=57.9
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|+......+.++|||||||+++|++| |+.|.. +...+.... .+.... .. -..+.++...|
T Consensus 228 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~------~~~~~~---~~---~~~l~~li~~~ 295 (334)
T 2pvf_A 228 PEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGH------RMDKPA---NC---TNELYMMMRDC 295 (334)
T ss_dssp HHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHTC------CCCCCT---TC---CHHHHHHHHHH
T ss_pred hHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHHHHHhcCC------CCCCCc---cC---CHHHHHHHHHH
Confidence 455556678899999999999999999 998853 111111000 011111 11 12345667889
Q ss_pred CCCCCCCCCChHHHHHHHHhcccc
Q 003931 743 TSTTPDTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~~~ 766 (785)
.+.+|++||++.||++.|+++...
T Consensus 296 l~~dp~~Rps~~ell~~L~~l~~~ 319 (334)
T 2pvf_A 296 WHAVPSQRPTFKQLVEDLDRILTL 319 (334)
T ss_dssp TCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ccCChhhCcCHHHHHHHHHHHHhc
Confidence 999999999999999999988654
No 242
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=98.04 E-value=9.1e-07 Score=100.16 Aligned_cols=88 Identities=20% Similarity=0.280 Sum_probs=57.8
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCC--CCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQR--LPPPTGQLAEAVVLTINVALACTSTT 746 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~--l~~~~~~~~~~~~~~~~ial~C~~~~ 746 (785)
+|+......+.|+|||||||+++||+| |+.|..-... ....+.+... ...+. . +-..+.++...|++.+
T Consensus 541 PE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~----~~~~~~i~~~~~~~~p~-~---~~~~l~~li~~cl~~d 612 (635)
T 4fl3_A 541 PECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKG----SEVTAMLEKGERMGCPA-G---CPREMYDLMNLCWTYD 612 (635)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCH----HHHHHHHHTTCCCCCCT-T---CCHHHHHHHHHHTCSS
T ss_pred hhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH----HHHHHHHHcCCCCCCCC-C---CCHHHHHHHHHHcCCC
Confidence 466666778999999999999999999 9999531000 0000111100 00000 1 1123456778899999
Q ss_pred CCCCCChHHHHHHHHhccc
Q 003931 747 PDTRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 747 p~~Rp~m~~vv~~l~~~~~ 765 (785)
|++||+|.+|+++|+++-.
T Consensus 613 P~~RPs~~~l~~~L~~~~~ 631 (635)
T 4fl3_A 613 VENRPGFAAVELRLRNYYY 631 (635)
T ss_dssp TTTSCCHHHHHHHHHHHHH
T ss_pred HhHCcCHHHHHHHHHHHHH
Confidence 9999999999999987643
No 243
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=98.04 E-value=3.9e-07 Score=95.26 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=48.5
Q ss_pred cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCC-chhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPT-GQLAEAVVLTINVALACTSTTPDTRPSMR 754 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~-~~~~~~~~~~~~ial~C~~~~p~~Rp~m~ 754 (785)
...+.++|||||||+++||+||+.|.+-. .........++++...... ..... .+.++...|.+.+|++||+|.
T Consensus 195 ~~~~~~~DiwslG~il~ell~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~li~~~L~~dp~~Rpt~~ 269 (343)
T 3dbq_A 195 SKISPKSDVWSLGCILYYMTYGKTPFQQI--INQISKLHAIIDPNHEIEFPDIPEK---DLQDVLKCCLKRDPKQRISIP 269 (343)
T ss_dssp --CCHHHHHHHHHHHHHHHHHSSCTTTTC--CSHHHHHHHHHCTTSCCCCCCCSCH---HHHHHHHHHTCSSTTTSCCHH
T ss_pred cCCCchhhHHHHHHHHHHHHhCCCcchhh--hhHHHHHHHHhcCCcccCCcccCCH---HHHHHHHHHcCCChhHCCCHH
Confidence 56788999999999999999999995310 0000111222332221110 01111 234667789999999999999
Q ss_pred HHHH
Q 003931 755 FVAQ 758 (785)
Q Consensus 755 ~vv~ 758 (785)
||++
T Consensus 270 e~l~ 273 (343)
T 3dbq_A 270 ELLA 273 (343)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9976
No 244
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=98.04 E-value=5.5e-07 Score=95.84 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=49.1
Q ss_pred cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCc-hhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTG-QLAEAVVLTINVALACTSTTPDTRPSMR 754 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~-~~~~~~~~~~~ial~C~~~~p~~Rp~m~ 754 (785)
...+.++|||||||++.||+||+.|.+-. ........+++++....... .... .+.++...|.+.+|++||+|.
T Consensus 242 ~~~~~~~DiwSlGvil~ell~G~~Pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~L~~dP~~Rps~~ 316 (390)
T 2zmd_A 242 SKISPKSDVWSLGCILYYMTYGKTPFQQI--INQISKLHAIIDPNHEIEFPDIPEK---DLQDVLKCCLKRDPKQRISIP 316 (390)
T ss_dssp --CCHHHHHHHHHHHHHHHHHSSCTTTTC--CCHHHHHHHHHCTTSCCCCCCCSCH---HHHHHHHHHTCSSTTTSCCHH
T ss_pred cCCCChhhHHHHHHHHHHHHHCCCcchhh--hHHHHHHHHHhCccccCCCCccchH---HHHHHHHHHcccChhhCCCHH
Confidence 35788999999999999999999995310 00001122333333221100 1111 244667789999999999999
Q ss_pred HHHH
Q 003931 755 FVAQ 758 (785)
Q Consensus 755 ~vv~ 758 (785)
||++
T Consensus 317 ell~ 320 (390)
T 2zmd_A 317 ELLA 320 (390)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 9975
No 245
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=98.02 E-value=2.7e-06 Score=87.33 Aligned_cols=86 Identities=15% Similarity=0.159 Sum_probs=52.8
Q ss_pred hhhhhcccccccceeeeehhhhhhhhCCCCCchhh------hccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCC
Q 003931 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELIT------SLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTS 744 (785)
Q Consensus 671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~------~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~ 744 (785)
|+......+.++||||||+++.|++||+.|.+-.. .+...........+.+. ..+.++...|.+
T Consensus 205 E~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~l~~li~~~l~ 274 (309)
T 2h34_A 205 ERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSVMGAHINQAIPRPSTVRPGIP----------VAFDAVIARGMA 274 (309)
T ss_dssp GGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHHHHHHSCCCCGGGTSTTCC----------THHHHHHHHHTC
T ss_pred HHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHHHHHhccCCCCccccCCCCC----------HHHHHHHHHhcc
Confidence 44444566889999999999999999999964111 01000000011111111 123456778999
Q ss_pred CCCCCCC-ChHHHHHHHHhcccc
Q 003931 745 TTPDTRP-SMRFVAQELSAKTQA 766 (785)
Q Consensus 745 ~~p~~Rp-~m~~vv~~l~~~~~~ 766 (785)
.+|++|| ++.++++.|++.-..
T Consensus 275 ~dP~~Rp~s~~~l~~~l~~~l~~ 297 (309)
T 2h34_A 275 KNPEDRYVTCGDLSAAAHAALAT 297 (309)
T ss_dssp SSGGGSCSSHHHHHHHHHHTCC-
T ss_pred CCHHHHHHhHHHHHHHHHHHHHh
Confidence 9999999 999999999876443
No 246
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=98.02 E-value=1.4e-06 Score=88.44 Aligned_cols=89 Identities=22% Similarity=0.266 Sum_probs=56.8
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCC-CchhHHHHHHHHHHHhhcCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPP-TGQLAEAVVLTINVALACTSTTP 747 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~~~~~~ial~C~~~~p 747 (785)
+|+......+.++||||||+++.|++| |+.|..-... ....+.+....... ..... ..+.++...|.+.+|
T Consensus 181 PE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~----~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp 253 (288)
T 3kfa_A 181 PESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDL----SQVYELLEKDYRMERPEGCP---EKVYELMRACWQWNP 253 (288)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG----GGHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSG
T ss_pred hhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH----HHHHHHHhccCCCCCCCCCC---HHHHHHHHHHhCCCh
Confidence 455555677889999999999999999 8888531100 00001111110000 00111 234566778999999
Q ss_pred CCCCChHHHHHHHHhccc
Q 003931 748 DTRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 748 ~~Rp~m~~vv~~l~~~~~ 765 (785)
++||++.||+++|+++..
T Consensus 254 ~~Rps~~~~~~~l~~~~~ 271 (288)
T 3kfa_A 254 SDRPSFAEIHQAFETMFQ 271 (288)
T ss_dssp GGSCCHHHHHHHHHHHHH
T ss_pred hhCcCHHHHHHHHHHHHH
Confidence 999999999999987654
No 247
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=98.02 E-value=1.2e-06 Score=91.56 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=56.9
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCC-CchhHHHHHHHHHHHhhcCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPP-TGQLAEAVVLTINVALACTSTTP 747 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~~~~~~ial~C~~~~p 747 (785)
+|.......+.++|||||||+++|++| |+.|..-... .....+++....... ..... ..+.++...|.+.+|
T Consensus 243 PE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp 316 (344)
T 1rjb_A 243 PESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV---DANFYKLIQNGFKMDQPFYAT---EEIYIIMQSCWAFDS 316 (344)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC---SHHHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSG
T ss_pred HHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCc---HHHHHHHHhcCCCCCCCCCCC---HHHHHHHHHHcCCCc
Confidence 455556678899999999999999999 9988531100 000001111110000 00111 224566788999999
Q ss_pred CCCCChHHHHHHHHhcccc
Q 003931 748 DTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 748 ~~Rp~m~~vv~~l~~~~~~ 766 (785)
++||++.||++.|+.+...
T Consensus 317 ~~Rps~~~l~~~l~~~~~~ 335 (344)
T 1rjb_A 317 RKRPSFPNLTSFLGCQLAD 335 (344)
T ss_dssp GGSCCHHHHHHHHHHHC--
T ss_pred hhCcCHHHHHHHHHHHHHH
Confidence 9999999999999887554
No 248
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=98.02 E-value=1.1e-06 Score=90.70 Aligned_cols=91 Identities=25% Similarity=0.271 Sum_probs=57.4
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTP 747 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p 747 (785)
+|.......+.++||||||++++|++| |+.|..-...... .....+-..+.... ... ..+.++...|.+.+|
T Consensus 219 PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~l~~li~~~l~~dp 292 (316)
T 2xir_A 219 PETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPD---YTT---PEMYQTMLDCWHGEP 292 (316)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCT---TCC---HHHHHHHHHHTCSSG
T ss_pred chhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHHHHHHhccCccCCCCC---CCC---HHHHHHHHHHcCCCh
Confidence 355556677899999999999999999 9988531100000 00000000011111 111 124566778999999
Q ss_pred CCCCChHHHHHHHHhcccc
Q 003931 748 DTRPSMRFVAQELSAKTQA 766 (785)
Q Consensus 748 ~~Rp~m~~vv~~l~~~~~~ 766 (785)
++||++.||++.|+.+.+.
T Consensus 293 ~~Rps~~ell~~L~~~~~~ 311 (316)
T 2xir_A 293 SQRPTFSELVEHLGNLLQA 311 (316)
T ss_dssp GGSCCHHHHHHHHHHHHHH
T ss_pred hhCcCHHHHHHHHHHHHhh
Confidence 9999999999999887654
No 249
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=98.00 E-value=9.3e-07 Score=90.53 Aligned_cols=91 Identities=16% Similarity=0.170 Sum_probs=56.9
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc--hh---hhccC---c---ccccccccCCCCC-CCchhHHHHHHHHH
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE--LI---TSLSG---E---LFLKDVLDQRLPP-PTGQLAEAVVLTIN 737 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~--~~---~~~~~---~---~~~~~~~d~~l~~-~~~~~~~~~~~~~~ 737 (785)
+|.......+.++||||+|++++|++||+.|.. .. ..... . ....+.+...... ...... ..+.+
T Consensus 198 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~ 274 (302)
T 4e5w_A 198 PECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCP---DEVYQ 274 (302)
T ss_dssp HHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHHHHHTTCCCCCCTTCC---HHHHH
T ss_pred CeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHHHHhccCCCCCCCCCC---HHHHH
Confidence 455556677889999999999999999999854 11 11000 0 0000111111000 000111 23456
Q ss_pred HHhhcCCCCCCCCCChHHHHHHHHhc
Q 003931 738 VALACTSTTPDTRPSMRFVAQELSAK 763 (785)
Q Consensus 738 ial~C~~~~p~~Rp~m~~vv~~l~~~ 763 (785)
+...|.+.+|++||++.||+++|+++
T Consensus 275 li~~~l~~dp~~Rps~~~ll~~L~~l 300 (302)
T 4e5w_A 275 LMRKCWEFQPSNRTSFQNLIEGFEAL 300 (302)
T ss_dssp HHHHTTCSSGGGSCCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 78899999999999999999999875
No 250
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=97.99 E-value=1.5e-06 Score=90.17 Aligned_cols=84 Identities=21% Similarity=0.322 Sum_probs=56.7
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|.......+.++||||||++++|++| |+.|.. +..++.... .+.... ... ..+.++...|
T Consensus 214 PE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~------~~~~~~---~~~---~~l~~li~~~ 281 (327)
T 2yfx_A 214 PEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGG------RMDPPK---NCP---GPVYRIMTQC 281 (327)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTC------CCCCCT---TCC---HHHHHHHHHH
T ss_pred HhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCC------CCCCCC---CCC---HHHHHHHHHH
Confidence 355556677899999999999999999 888853 111111110 001111 111 1345677899
Q ss_pred CCCCCCCCCChHHHHHHHHhccc
Q 003931 743 TSTTPDTRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~~ 765 (785)
.+.+|++||+|.||++.|..+..
T Consensus 282 l~~dp~~Rps~~~ll~~l~~~~~ 304 (327)
T 2yfx_A 282 WQHQPEDRPNFAIILERIEYCTQ 304 (327)
T ss_dssp TCSSGGGSCCHHHHHHHHHHHHH
T ss_pred hcCChhhCcCHHHHHHHHHHHhc
Confidence 99999999999999999987644
No 251
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=97.96 E-value=1.7e-06 Score=88.36 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=51.2
Q ss_pred hhcccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931 674 VTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS 752 (785)
Q Consensus 674 ~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~ 752 (785)
.....+.++|||||||++.|++||+.|..-...... ......+.......+.......-..+.++...|.+.+|++||+
T Consensus 171 ~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps 250 (299)
T 3m2w_A 171 TGEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMT 250 (299)
T ss_dssp TTCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCSCCSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCC
T ss_pred ccccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHHHHHHhhccccCCchhcccCCHHHHHHHHHHcccChhhCCC
Confidence 345678899999999999999999999531100000 0000001111110000000001123456778899999999999
Q ss_pred hHHHHH--HHHhc
Q 003931 753 MRFVAQ--ELSAK 763 (785)
Q Consensus 753 m~~vv~--~l~~~ 763 (785)
+.||++ .+.+.
T Consensus 251 ~~e~l~hp~~~~~ 263 (299)
T 3m2w_A 251 ITEFMNHPWIMQS 263 (299)
T ss_dssp HHHHHTSHHHHTG
T ss_pred HHHHhcChhhccc
Confidence 999987 45443
No 252
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=97.95 E-value=1.3e-06 Score=88.36 Aligned_cols=81 Identities=22% Similarity=0.265 Sum_probs=44.1
Q ss_pred hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR 750 (785)
Q Consensus 671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R 750 (785)
|.......+.++||||||+++.|++||+.|.+-... ......+.......+. ... ..+.++...|.+.+|++|
T Consensus 182 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~---~~~~~~~~~~~~~~~~-~~~---~~~~~li~~~l~~dp~~R 254 (278)
T 3cok_A 182 EIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTV---KNTLNKVVLADYEMPS-FLS---IEAKDLIHQLLRRNPADR 254 (278)
T ss_dssp ----------CTHHHHHHHHHHHHHHSSCSSCCCSC---C-----CCSSCCCCCT-TSC---HHHHHHHHHHSCSSGGGS
T ss_pred chhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhH---HHHHHHHhhcccCCcc-ccC---HHHHHHHHHHcccCHhhC
Confidence 333344567899999999999999999999542111 0011111111111111 111 124467788999999999
Q ss_pred CChHHHHH
Q 003931 751 PSMRFVAQ 758 (785)
Q Consensus 751 p~m~~vv~ 758 (785)
|++.+|++
T Consensus 255 ps~~~~l~ 262 (278)
T 3cok_A 255 LSLSSVLD 262 (278)
T ss_dssp CCHHHHTT
T ss_pred CCHHHHhc
Confidence 99999864
No 253
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=97.94 E-value=1.1e-06 Score=90.54 Aligned_cols=83 Identities=17% Similarity=0.275 Sum_probs=50.8
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|.-.....+.++||||+||++.||+||+.|.+-... ......++.............+ +.++...|.+.+|++
T Consensus 194 PE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~---~~~~~~i~~~~~~~~~~~~s~~---~~~li~~~L~~dP~~ 267 (350)
T 4b9d_A 194 PEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSM---KNLVLKIISGSFPPVSLHYSYD---LRSLVSQLFKRNPRD 267 (350)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHHHHHHTCCCCCCTTSCHH---HHHHHHHHTCSSGGG
T ss_pred HHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH---HHHHHHHHcCCCCCCCccCCHH---HHHHHHHHccCChhH
Confidence 3555566678899999999999999999999530000 0000111111111000011122 335567899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.|+++
T Consensus 268 R~s~~e~l~ 276 (350)
T 4b9d_A 268 RPSVNSILE 276 (350)
T ss_dssp SCCHHHHHT
T ss_pred CcCHHHHhc
Confidence 999999865
No 254
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=97.94 E-value=1.4e-06 Score=90.16 Aligned_cols=90 Identities=22% Similarity=0.305 Sum_probs=56.1
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
+|+......+.++||||||++++|++| |+.|..-... ......+.+........... ..+.++...|.+.+|+
T Consensus 209 PE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~l~~li~~~l~~dp~ 282 (322)
T 1p4o_A 209 PESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSN---EQVLRFVMEGGLLDKPDNCP---DMLFELMRMCWQYNPK 282 (322)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCH---HHHHHHHHTTCCCCCCTTCC---HHHHHHHHHHTCSSGG
T ss_pred hhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCH---HHHHHHHHcCCcCCCCCCCC---HHHHHHHHHHcCCCcc
Confidence 355555667899999999999999999 7887531000 00000111111110000111 1244667789999999
Q ss_pred CCCChHHHHHHHHhccc
Q 003931 749 TRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 749 ~Rp~m~~vv~~l~~~~~ 765 (785)
+||++.||++.|+++..
T Consensus 283 ~Rps~~e~l~~L~~~~~ 299 (322)
T 1p4o_A 283 MRPSFLEIISSIKEEME 299 (322)
T ss_dssp GSCCHHHHHHHHGGGSC
T ss_pred cCcCHHHHHHHHHHhhc
Confidence 99999999999987633
No 255
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=97.92 E-value=1.3e-06 Score=91.44 Aligned_cols=87 Identities=13% Similarity=0.120 Sum_probs=51.2
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+......+.++|||||||++.|++||+.|..-... .......+.+...........+.-..+.++...|.+.+|++
T Consensus 219 PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~ 296 (349)
T 2w4o_A 219 PEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERG--DQFMFRRILNCEYYFISPWWDEVSLNAKDLVRKLIVLDPKK 296 (349)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTC--HHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGG
T ss_pred HHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcc--cHHHHHHHHhCCCccCCchhhhCCHHHHHHHHHHccCChhh
Confidence 4555566788999999999999999999999520000 00000111111110000000000112446678999999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.|+++
T Consensus 297 Rpt~~e~l~ 305 (349)
T 2w4o_A 297 RLTTFQALQ 305 (349)
T ss_dssp SCCHHHHHH
T ss_pred CcCHHHHhc
Confidence 999999865
No 256
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=97.92 E-value=1e-06 Score=89.28 Aligned_cols=89 Identities=13% Similarity=0.043 Sum_probs=52.5
Q ss_pred ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV 756 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v 756 (785)
..+.++|||||||++.|++||+.|.+-......-......+..............-..+.++...|.+.+|++| ++.|+
T Consensus 178 ~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el 256 (286)
T 3uqc_A 178 DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDIPFQISAVAARSVQGDGGIR-SASTL 256 (286)
T ss_dssp TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHH
T ss_pred CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCCChhhcccCCCHHHHHHHHHHcccCCccC-CHHHH
Confidence 57899999999999999999999953110000000000000100000000000001124566788999999999 99999
Q ss_pred HHHHHhcccc
Q 003931 757 AQELSAKTQA 766 (785)
Q Consensus 757 v~~l~~~~~~ 766 (785)
+++|+++...
T Consensus 257 ~~~L~~~~~~ 266 (286)
T 3uqc_A 257 LNLMQQATAV 266 (286)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhcc
Confidence 9999987654
No 257
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=97.91 E-value=1.8e-06 Score=88.83 Aligned_cols=85 Identities=18% Similarity=0.235 Sum_probs=50.5
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+-.....+.++||||+||++.||+||+.|..-......-..+.+...+.+... .....+ +.++.-.|.+.+|++
T Consensus 239 PEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~-~~~s~~---~~dli~~~L~~dP~~ 314 (346)
T 4fih_A 239 PELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNL-HKVSPS---LKGFLDRLLVRDPAQ 314 (346)
T ss_dssp HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCG-GGSCHH---HHHHHHHHSCSSTTT
T ss_pred HHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCcc-ccCCHH---HHHHHHHHcCCChhH
Confidence 4555556678999999999999999999999530000000000111111222111 011122 234566899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.|+.+
T Consensus 315 R~ta~e~l~ 323 (346)
T 4fih_A 315 RATAAELLK 323 (346)
T ss_dssp SCCHHHHTT
T ss_pred CcCHHHHhc
Confidence 999998854
No 258
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=97.91 E-value=6.3e-06 Score=85.05 Aligned_cols=89 Identities=16% Similarity=0.126 Sum_probs=54.3
Q ss_pred hcccccccceeeeehhhhhhhhCCCCCch----------h-hhccC--ccccccc---------ccCCCCCCCchhHHHH
Q 003931 675 TMRVTDKCDVFSFGVVALEVMMGRHPGEL----------I-TSLSG--ELFLKDV---------LDQRLPPPTGQLAEAV 732 (785)
Q Consensus 675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~----------~-~~~~~--~~~~~~~---------~d~~l~~~~~~~~~~~ 732 (785)
....+.++|||||||++.|++||+.|.+- . ..... ......+ .++.+..........-
T Consensus 197 ~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (319)
T 4euu_A 197 QKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQ 276 (319)
T ss_dssp CCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHH
T ss_pred cCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchhHH
Confidence 35678899999999999999999999530 0 00000 0000000 1111111111112222
Q ss_pred HHHHHHHhhcCCCCCCCCCChHHHHHHHHhc
Q 003931 733 VLTINVALACTSTTPDTRPSMRFVAQELSAK 763 (785)
Q Consensus 733 ~~~~~ial~C~~~~p~~Rp~m~~vv~~l~~~ 763 (785)
..+..+.-.|.+.+|++||++.|+++...+.
T Consensus 277 ~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~ 307 (319)
T 4euu_A 277 VLLTPVLANILEADQEKCWGFDQFFAETSDI 307 (319)
T ss_dssp HHHHHHHHHHSCCCTTTSCCHHHHHHHHHHH
T ss_pred HHhHHHHHHhccCChhhhccHHHhhhccHHH
Confidence 3345677889999999999999999887654
No 259
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=97.90 E-value=2e-06 Score=90.99 Aligned_cols=86 Identities=13% Similarity=0.017 Sum_probs=50.7
Q ss_pred hhhhhh--cccccccceeeeehhhhhhhhCCCCCchhhhccCccc----ccccccCCCCCCC-chhHHHHHHHHHHHhhc
Q 003931 670 TELAVT--MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELF----LKDVLDQRLPPPT-GQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~--~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~----~~~~~d~~l~~~~-~~~~~~~~~~~~ial~C 742 (785)
+|+... ...+.++|||||||++.||+||+.|.+-......... ...........+. ....+ .+.++...|
T Consensus 260 PE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~ 336 (371)
T 3q60_A 260 REFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPD---FVKTLIGRF 336 (371)
T ss_dssp HHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTCCCBCCTTSCCCCSCCCTTSSCCCH---HHHHHHHHH
T ss_pred hhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcccccchhhhhhhhccccccchhhccCCCH---HHHHHHHHH
Confidence 355444 5678999999999999999999999541100000000 0000111111000 01111 244567789
Q ss_pred CCCCCCCCCChHHHHH
Q 003931 743 TSTTPDTRPSMRFVAQ 758 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~ 758 (785)
.+.+|++||++.|+++
T Consensus 337 L~~dP~~Rpt~~e~l~ 352 (371)
T 3q60_A 337 LNFDRRRRLLPLEAME 352 (371)
T ss_dssp TCSSTTTCCCHHHHTT
T ss_pred cCCChhhCCCHHHHhc
Confidence 9999999999999864
No 260
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=97.90 E-value=9.1e-07 Score=91.17 Aligned_cols=78 Identities=19% Similarity=0.265 Sum_probs=48.5
Q ss_pred cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCC-chhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPT-GQLAEAVVLTINVALACTSTTPDTRPSMR 754 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~-~~~~~~~~~~~~ial~C~~~~p~~Rp~m~ 754 (785)
...+.++|||||||+++|++||+.|.+-. ........+++++...... ..... .+.++...|.+.+|++||++.
T Consensus 214 ~~~~~~~Di~slG~il~el~~g~~pf~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~li~~~l~~dp~~Rps~~ 288 (313)
T 3cek_A 214 SKISPKSDVWSLGCILYYMTYGKTPFQQI--INQISKLHAIIDPNHEIEFPDIPEK---DLQDVLKCCLKRDPKQRISIP 288 (313)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSSCTTTTC--CSHHHHHHHHHCTTSCCCCCCCSCH---HHHHHHHHHTCSSTTTSCCHH
T ss_pred ccCCchHHHHHHHHHHHHHHhCCCchhhH--HHHHHHHHHHHhcccccCCcccchH---HHHHHHHHHccCCcccCcCHH
Confidence 45778999999999999999999995310 0000011222232221100 01111 234566789999999999999
Q ss_pred HHHH
Q 003931 755 FVAQ 758 (785)
Q Consensus 755 ~vv~ 758 (785)
||++
T Consensus 289 ell~ 292 (313)
T 3cek_A 289 ELLA 292 (313)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9975
No 261
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=97.90 E-value=3e-06 Score=89.73 Aligned_cols=76 Identities=9% Similarity=-0.070 Sum_probs=48.8
Q ss_pred ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV 756 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v 756 (785)
..+.++|||||||++.||+||+.|..-... ......+.. .... . .+ .+.++...|.+.+|++||++.||
T Consensus 289 ~~~~~~DvwSlG~il~elltg~~Pf~~~~~---~~~~~~~~~-~~~~---~-~~---~~~~li~~~L~~dp~~Rpt~~e~ 357 (377)
T 3byv_A 289 LMTFSFDAWALGLVIYWIWCADLPITKDAA---LGGSEWIFR-SCKN---I-PQ---PVRALLEGFLRYPKEDRLLPLQA 357 (377)
T ss_dssp ECCHHHHHHHHHHHHHHHHHSSCCC---------CCSGGGGS-SCCC---C-CH---HHHHHHHHHTCSSGGGCCCHHHH
T ss_pred cCChhhhHHHHHHHHHHHHHCCCCCccccc---ccchhhhhh-hccC---C-CH---HHHHHHHHHcCCCchhCCCHHHH
Confidence 788999999999999999999999531110 001111111 1111 1 11 24466788999999999999999
Q ss_pred HH--HHHhc
Q 003931 757 AQ--ELSAK 763 (785)
Q Consensus 757 v~--~l~~~ 763 (785)
++ .+.++
T Consensus 358 l~hp~f~~~ 366 (377)
T 3byv_A 358 METPEYEQL 366 (377)
T ss_dssp HTSHHHHHH
T ss_pred hhChHHHHH
Confidence 86 44444
No 262
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=97.89 E-value=6.4e-06 Score=83.83 Aligned_cols=90 Identities=20% Similarity=0.238 Sum_probs=57.1
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhc---cC--cccccccccCCCCCCCchhHHHHHHHHHHHhhcCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSL---SG--ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTS 744 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~---~~--~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~ 744 (785)
+|.......+.++|||||||++.|++||+.|.+-.... .. ....... .+.... .. -..+.++...|.+
T Consensus 181 PE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~---~~~l~~li~~~l~ 253 (294)
T 4eqm_A 181 PEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVPNV-TTDVRK---DI---PQSLSNVILRATE 253 (294)
T ss_dssp HHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSCCCCH-HHHSCT---TS---CHHHHHHHHHHSC
T ss_pred HhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhccCCCc-chhccc---CC---CHHHHHHHHHHhc
Confidence 45555666788999999999999999999995411000 00 0000000 000000 00 1224466788999
Q ss_pred CCCCCCC-ChHHHHHHHHhcccc
Q 003931 745 TTPDTRP-SMRFVAQELSAKTQA 766 (785)
Q Consensus 745 ~~p~~Rp-~m~~vv~~l~~~~~~ 766 (785)
.+|++|| ++.++.+.|.++...
T Consensus 254 ~dp~~R~~~~~~l~~~l~~~~~~ 276 (294)
T 4eqm_A 254 KDKANRYKTIQEMKDDLSSVLHE 276 (294)
T ss_dssp SSGGGSCSSHHHHHHHHHTSSSS
T ss_pred CCHhHccccHHHHHHHHHHHHhh
Confidence 9999999 999999999887554
No 263
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=97.88 E-value=1.6e-06 Score=87.87 Aligned_cols=94 Identities=14% Similarity=0.109 Sum_probs=55.3
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+......+.++||||||+++.|++||+.|..-... ......+...............-..+.++...|.+.+|++
T Consensus 180 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~ 256 (283)
T 3bhy_A 180 PEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETK---QETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKR 256 (283)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSH---HHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSGGG
T ss_pred cceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcch---HHHHHHhHhcccCCcchhcccCCHHHHHHHHHHccCCHhH
Confidence 3544556678899999999999999999999531000 0000000000000000000000123456788999999999
Q ss_pred CCChHHHHH--HHHhcccc
Q 003931 750 RPSMRFVAQ--ELSAKTQA 766 (785)
Q Consensus 750 Rp~m~~vv~--~l~~~~~~ 766 (785)
||++.|+++ .++.++..
T Consensus 257 Rps~~~~l~h~~~~~~~~~ 275 (283)
T 3bhy_A 257 RMTIAQSLEHSWIKAIRRR 275 (283)
T ss_dssp SCCHHHHHHCHHHHHHHHC
T ss_pred CcCHHHHHhCHHHHHHHHH
Confidence 999999987 45555443
No 264
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=97.87 E-value=2.1e-06 Score=87.56 Aligned_cols=85 Identities=20% Similarity=0.286 Sum_probs=50.4
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+-.....+.++|||||||++.|++||+.|..-.............-.+.+..+ .... ..+.++...|.+.+|++
T Consensus 185 PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~li~~~l~~dp~~ 260 (297)
T 3fxz_A 185 PEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNP-EKLS---AIFRDFLNRCLEMDVEK 260 (297)
T ss_dssp HHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSCG-GGSC---HHHHHHHHHHSCSSTTT
T ss_pred hhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCCc-cccC---HHHHHHHHHHccCChhH
Confidence 3555556678999999999999999999999531000000000000001111110 0111 12345677899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.|+++
T Consensus 261 Rps~~ell~ 269 (297)
T 3fxz_A 261 RGSAKELLQ 269 (297)
T ss_dssp SCCHHHHTT
T ss_pred CcCHHHHhh
Confidence 999999865
No 265
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=97.87 E-value=2.2e-06 Score=86.56 Aligned_cols=84 Identities=13% Similarity=0.115 Sum_probs=50.8
Q ss_pred hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR 750 (785)
Q Consensus 671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R 750 (785)
|.......+.++||||||+++.|++||+.|.+-.... .....+.+........... ..+.++...|.+.+|++|
T Consensus 186 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~---~~~~~i~~~~~~~~~~~~~---~~l~~li~~~l~~~p~~R 259 (279)
T 2w5a_A 186 EQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQK---ELAGKIREGKFRRIPYRYS---DELNEIITRMLNLKDYHR 259 (279)
T ss_dssp HHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHHTCCCCCCTTSC---HHHHHHHHHHTCSSGGGS
T ss_pred HHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHH---HHHHHHhhcccccCCcccC---HHHHHHHHHHcCCCcccC
Confidence 4444556788999999999999999999995411000 0000010111000000111 124466788999999999
Q ss_pred CChHHHHHHH
Q 003931 751 PSMRFVAQEL 760 (785)
Q Consensus 751 p~m~~vv~~l 760 (785)
|++.||++.+
T Consensus 260 ps~~~ll~~~ 269 (279)
T 2w5a_A 260 PSVEEILENP 269 (279)
T ss_dssp CCHHHHHTST
T ss_pred CCHHHHHhCh
Confidence 9999998654
No 266
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=97.86 E-value=1.4e-06 Score=89.93 Aligned_cols=86 Identities=13% Similarity=0.168 Sum_probs=51.9
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|.......+.++|||||||++.|++||+.|..-... ......+...............-..+.++...|.+.+|++
T Consensus 172 PE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~ 248 (321)
T 1tki_A 172 PEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN---QQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKS 248 (321)
T ss_dssp HHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH---HHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGG
T ss_pred cHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH---HHHHHHHHcCCCCCChhhhccCCHHHHHHHHHHcCCChhH
Confidence 3544455678899999999999999999999531000 0001111111111100000000123456778999999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.|+++
T Consensus 249 Rpt~~e~l~ 257 (321)
T 1tki_A 249 RMTASEALQ 257 (321)
T ss_dssp SCCHHHHHH
T ss_pred CcCHHHHhc
Confidence 999999987
No 267
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=97.86 E-value=5.6e-06 Score=88.29 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=55.3
Q ss_pred cccccccceeeeehhhhhhhhCCCCCc-----------hhhhccC--ccccccc---------ccCCCCCCCchhHHHHH
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGE-----------LITSLSG--ELFLKDV---------LDQRLPPPTGQLAEAVV 733 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~-----------~~~~~~~--~~~~~~~---------~d~~l~~~~~~~~~~~~ 733 (785)
...+.++|||||||++.|++||+.|.. +...... ......+ .+..+..........-.
T Consensus 198 ~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (396)
T 4eut_A 198 KKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQV 277 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHh
Confidence 466789999999999999999999953 0000000 0000000 01111111111122233
Q ss_pred HHHHHHhhcCCCCCCCCCChHHHHHHHHhccc
Q 003931 734 LTINVALACTSTTPDTRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 734 ~~~~ial~C~~~~p~~Rp~m~~vv~~l~~~~~ 765 (785)
.+..+.-.|.+.+|++||++.|+.+.+.++-.
T Consensus 278 ~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~ 309 (396)
T 4eut_A 278 LLTPVLANILEADQEKCWGFDQFFAETSDILH 309 (396)
T ss_dssp HHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHT
T ss_pred hchHHHHHhhccChhhhccHHHHHHHHHHHhh
Confidence 45577789999999999999999999887633
No 268
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=97.86 E-value=2.2e-06 Score=89.69 Aligned_cols=80 Identities=20% Similarity=0.172 Sum_probs=48.3
Q ss_pred cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF 755 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~ 755 (785)
...+.++|||||||++.|++||+.|..-... ......+++.............-..+.++.-.|.+.+|++||++.|
T Consensus 251 ~~~~~~~DiwslG~il~el~~g~~pf~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ 327 (345)
T 3hko_A 251 ESYGPKCDAWSAGVLLHLLLMGAVPFPGVND---ADTISQVLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMR 327 (345)
T ss_dssp SCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCTTSGGGGGSCHHHHHHHHHHSCSCTTTSCCHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCCCCCCCh---HHHHHHHHhcccccCCcccccCCHHHHHHHHHHcCCChhHCCCHHH
Confidence 4567899999999999999999999531100 0001111111111100000000112445677899999999999999
Q ss_pred HHH
Q 003931 756 VAQ 758 (785)
Q Consensus 756 vv~ 758 (785)
|++
T Consensus 328 ~l~ 330 (345)
T 3hko_A 328 ALQ 330 (345)
T ss_dssp HHH
T ss_pred Hhc
Confidence 976
No 269
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=97.85 E-value=4.9e-06 Score=85.53 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=45.8
Q ss_pred ccccccceeeeehhhhhhhhCCCCCc-hhhhcc-CcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGE-LITSLS-GELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR 754 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~-~~~~~~-~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~ 754 (785)
..+.++|||||||+++|++||+.|-. -..|.. .......-+.+.+ -..+.++...|.+.+|++||++.
T Consensus 231 ~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~l~~li~~~L~~dP~~Rpt~~ 300 (311)
T 3p1a_A 231 SYGTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGL----------SSELRSVLVMMLEPDPKLRATAE 300 (311)
T ss_dssp CCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHTTTCCCHHHHTTS----------CHHHHHHHHHHSCSSTTTSCCHH
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHhccCCCcccccCC----------CHHHHHHHHHHcCCChhhCcCHH
Confidence 57889999999999999999977632 111100 0000000001111 12345677889999999999999
Q ss_pred HHHH
Q 003931 755 FVAQ 758 (785)
Q Consensus 755 ~vv~ 758 (785)
||++
T Consensus 301 ell~ 304 (311)
T 3p1a_A 301 ALLA 304 (311)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9864
No 270
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=97.84 E-value=2.6e-06 Score=87.20 Aligned_cols=84 Identities=18% Similarity=0.285 Sum_probs=51.8
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+......+.++||||||+++.|++||+.|.+-...........+...+.+..... ..+.++...|.+.+|++
T Consensus 188 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~~li~~~l~~dp~~ 261 (303)
T 3a7i_A 188 PEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNPPTLEGNYS------KPLKEFVEACLNKEPSF 261 (303)
T ss_dssp HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCCSSCC------HHHHHHHHHHCCSSGGG
T ss_pred HHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcCCCCCCccccC------HHHHHHHHHHcCCChhh
Confidence 355555667889999999999999999999954110000000000000111111111 12456678899999999
Q ss_pred CCChHHHHHH
Q 003931 750 RPSMRFVAQE 759 (785)
Q Consensus 750 Rp~m~~vv~~ 759 (785)
||++.||++.
T Consensus 262 Rps~~~ll~~ 271 (303)
T 3a7i_A 262 RPTAKELLKH 271 (303)
T ss_dssp SCCHHHHTTC
T ss_pred CcCHHHHhhC
Confidence 9999999764
No 271
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=97.83 E-value=2.1e-06 Score=89.37 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=48.0
Q ss_pred hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
|+-.....+.++||||||+++.|++||+.|..-...... ......+.......+.......-..+.++...|.+.+|++
T Consensus 199 E~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~ 278 (336)
T 3fhr_A 199 EVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTE 278 (336)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------CCCTTTSTTCCHHHHHHHHHHSCSSGGG
T ss_pred hhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccCchhhccCCHHHHHHHHHHCCCChhH
Confidence 333445667899999999999999999999531100000 0000000000000000000000112446677899999999
Q ss_pred CCChHHHHH--HHHh
Q 003931 750 RPSMRFVAQ--ELSA 762 (785)
Q Consensus 750 Rp~m~~vv~--~l~~ 762 (785)
||++.||++ ++.+
T Consensus 279 Rpt~~ell~hp~~~~ 293 (336)
T 3fhr_A 279 RLTITQFMNHPWINQ 293 (336)
T ss_dssp SCCHHHHHHSHHHHT
T ss_pred CcCHHHHhcCccccc
Confidence 999999987 4544
No 272
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=97.83 E-value=1e-06 Score=89.65 Aligned_cols=79 Identities=20% Similarity=0.337 Sum_probs=47.4
Q ss_pred hcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCC-CCchhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931 675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPP-PTGQLAEAVVLTINVALACTSTTPDTRPSM 753 (785)
Q Consensus 675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~-~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m 753 (785)
....+.++||||||+++.|++||+.|.+- +..........++..... ....... .+.++...|.+.+|++||++
T Consensus 187 ~~~~~~~~Di~slG~il~~l~~g~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~l~~~p~~Rpt~ 261 (290)
T 3fme_A 187 QKGYSVKSDIWSLGITMIELAILRFPYDS--WGTPFQQLKQVVEEPSPQLPADKFSA---EFVDFTSQCLKKNSKERPTY 261 (290)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHTSCSSCC--CSCHHHHHHHHHHSCCCCCCTTTSCH---HHHHHHHHHTCSSGGGSCCH
T ss_pred CcCCCcHHHHHHHHHHHHHHHHCCCCccc--cCchHHHHHHHhccCCCCcccccCCH---HHHHHHHHHhhcChhhCcCH
Confidence 44567899999999999999999999641 000000001111111100 0001111 24566778999999999999
Q ss_pred HHHHH
Q 003931 754 RFVAQ 758 (785)
Q Consensus 754 ~~vv~ 758 (785)
.||++
T Consensus 262 ~e~l~ 266 (290)
T 3fme_A 262 PELMQ 266 (290)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 99977
No 273
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=97.82 E-value=2.2e-06 Score=88.82 Aligned_cols=79 Identities=22% Similarity=0.296 Sum_probs=46.8
Q ss_pred hcccccccceeeeehhhhhhhhCCCCCchhhhccCccccccccc---CCCCCCC-chhHHHHHHHHHHHhhcCCCCCCCC
Q 003931 675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLD---QRLPPPT-GQLAEAVVLTINVALACTSTTPDTR 750 (785)
Q Consensus 675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d---~~l~~~~-~~~~~~~~~~~~ial~C~~~~p~~R 750 (785)
....+.++||||||++++|++||+.|.+-.... ......+.. +.+.... ... -..+.++...|.+.+|++|
T Consensus 203 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~li~~~l~~dp~~R 277 (327)
T 3aln_A 203 RQGYDVRSDVWSLGITLYELATGRFPYPKWNSV--FDQLTQVVKGDPPQLSNSEEREF---SPSFINFVNLCLTKDESKR 277 (327)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHSCCCSSCC---------CCCCCSCCCCCCCCSSCCC---CHHHHHHHHHHTCSSGGGS
T ss_pred cCCCCchhhHHHHHHHHHHHHHCCCCCCCcchH--HHHHHHHhcCCCCCCCCcccccC---CHHHHHHHHHHhhCChhhC
Confidence 345678999999999999999999995311000 001111111 1111100 001 1234567788999999999
Q ss_pred CChHHHHH
Q 003931 751 PSMRFVAQ 758 (785)
Q Consensus 751 p~m~~vv~ 758 (785)
|++.||++
T Consensus 278 ps~~ell~ 285 (327)
T 3aln_A 278 PKYKELLK 285 (327)
T ss_dssp CCHHHHTT
T ss_pred cCHHHHHh
Confidence 99999976
No 274
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=97.82 E-value=5.3e-06 Score=88.01 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=28.3
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
+|+......+.++|||||||++.||+||+.|..
T Consensus 227 PE~~~~~~~~~~~DiwSlG~il~elltg~~pf~ 259 (382)
T 2vx3_A 227 PEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFS 259 (382)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred hHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 465566678899999999999999999999954
No 275
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=97.82 E-value=2.2e-06 Score=86.82 Aligned_cols=80 Identities=13% Similarity=0.156 Sum_probs=50.6
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT 743 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~ 743 (785)
+|+-.....+.++||||||+++.|++||+.|.. ....+.... .....+... .... .+.++...|.
T Consensus 176 PE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~---~~~~li~~~l 246 (284)
T 3kk8_A 176 PEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGA--YDYPSPEWD----TVTP---EAKSLIDSML 246 (284)
T ss_dssp HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC--CCCCTTTTT----TSCH---HHHHHHHHHS
T ss_pred chhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhcc--ccCCchhhc----ccCH---HHHHHHHHHc
Confidence 355555667889999999999999999999953 111100000 000011100 1111 2346677899
Q ss_pred CCCCCCCCChHHHHH
Q 003931 744 STTPDTRPSMRFVAQ 758 (785)
Q Consensus 744 ~~~p~~Rp~m~~vv~ 758 (785)
+.+|++||++.|+++
T Consensus 247 ~~dp~~Rps~~~~l~ 261 (284)
T 3kk8_A 247 TVNPKKRITADQALK 261 (284)
T ss_dssp CSSTTTSCCHHHHTT
T ss_pred ccChhhCCCHHHHhc
Confidence 999999999999976
No 276
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=2.2e-06 Score=77.95 Aligned_cols=84 Identities=8% Similarity=0.122 Sum_probs=65.1
Q ss_pred CCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCC-CcccCCccCCCC----CCccEEECCCCC-CcccCChhhhcCCC
Q 003931 29 RKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE-LTLEFPSFILTC----RNLTYLDLSLNK-LSGLIPERLFTNLG 102 (785)
Q Consensus 29 ~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~-i~~~~~~~~~~l----~~L~~L~Ls~n~-i~~~~~~~~f~~l~ 102 (785)
.+|+.||++++.|+......+.++++|++|+|++|. ++...-..+..+ ++|++|++++|. +++.--.. +.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-GGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-HhcCC
Confidence 478999999998888777778899999999999985 776555556654 479999999984 76433333 36789
Q ss_pred CCcEEECCCCC
Q 003931 103 KLEYLNLTENQ 113 (785)
Q Consensus 103 ~L~~L~Ls~n~ 113 (785)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999875
No 277
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=97.80 E-value=6.8e-06 Score=84.03 Aligned_cols=77 Identities=22% Similarity=0.367 Sum_probs=47.3
Q ss_pred cccccccceeeeehhhhhhhhCCCCCchhh-------hccCc--ccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGELIT-------SLSGE--LFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTT 746 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~-------~~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~ 746 (785)
...+.++||||||++++|++||+.|.+-.. ..... .......++....... . .+.++...|.+.+
T Consensus 202 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~li~~~l~~d 275 (303)
T 2vwi_A 202 RGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLETGVQDKEMLKKYG---K---SFRKMISLCLQKD 275 (303)
T ss_dssp HCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC-----CCCCCCC---H---HHHHHHHHHCCSS
T ss_pred cCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCccccccccchhhhhhh---H---HHHHHHHHHccCC
Confidence 346889999999999999999999954110 00000 0011111222211111 1 2446677899999
Q ss_pred CCCCCChHHHHH
Q 003931 747 PDTRPSMRFVAQ 758 (785)
Q Consensus 747 p~~Rp~m~~vv~ 758 (785)
|++||++.||++
T Consensus 276 p~~Rps~~~ll~ 287 (303)
T 2vwi_A 276 PEKRPTAAELLR 287 (303)
T ss_dssp GGGSCCHHHHHT
T ss_pred hhhCcCHHHHhh
Confidence 999999999975
No 278
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=97.80 E-value=2.1e-06 Score=88.85 Aligned_cols=86 Identities=16% Similarity=0.131 Sum_probs=50.4
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+......+.++|||||||++.|++||+.|..-... ......+...............-..+.++...|.+.+|++
T Consensus 186 PE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~ 262 (326)
T 2y0a_A 186 PEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK---QETLANVSAVNYEFEDEYFSNTSALAKDFIRRLLVKDPKK 262 (326)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH---HHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSGGG
T ss_pred ceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH---HHHHHHHHhcCCCcCccccccCCHHHHHHHHHHccCChhh
Confidence 3555556678899999999999999999999530000 0000000000000000000000112346677899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.|+++
T Consensus 263 Rpt~~e~l~ 271 (326)
T 2y0a_A 263 RMTIQDSLQ 271 (326)
T ss_dssp SCCHHHHHH
T ss_pred CCCHHHHhc
Confidence 999999975
No 279
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=97.79 E-value=2e-06 Score=89.18 Aligned_cols=86 Identities=12% Similarity=0.164 Sum_probs=50.5
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+......+.++|||||||++.|++||+.|..-.... .....+...............-..+.++...|.+.+|++
T Consensus 202 PE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~ 278 (327)
T 3lm5_A 202 PEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQ---ETYLNISQVNVDYSEETFSSVSQLATDFIQSLLVKNPEK 278 (327)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHHTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGG
T ss_pred CeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCch---HHHHHHHhcccccCchhhcccCHHHHHHHHHHcCCChhh
Confidence 35555567789999999999999999999995310000 000000000000000000000112446678899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.|+++
T Consensus 279 Rpt~~~ll~ 287 (327)
T 3lm5_A 279 RPTAEICLS 287 (327)
T ss_dssp SCCHHHHTT
T ss_pred CcCHHHHhC
Confidence 999999865
No 280
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=97.79 E-value=6.8e-06 Score=83.46 Aligned_cols=72 Identities=17% Similarity=0.262 Sum_probs=47.2
Q ss_pred cccccccceeeeehhhhhhhhCCCCCch-------hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGEL-------ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~-------~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
...+.++||||+|++++|++||+.|..- ...+.. .......+... ...+.++...|.+.+|+
T Consensus 204 ~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~-~~~~~~~~~~~----------~~~l~~li~~~l~~dp~ 272 (290)
T 1t4h_A 204 EKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTS-GVKPASFDKVA----------IPEVKEIIEGCIRQNKD 272 (290)
T ss_dssp TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTT-TCCCGGGGGCC----------CHHHHHHHHHHSCSSGG
T ss_pred ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhc-cCCccccCCCC----------CHHHHHHHHHHccCChh
Confidence 3478899999999999999999999531 111100 00000111110 12345677889999999
Q ss_pred CCCChHHHHH
Q 003931 749 TRPSMRFVAQ 758 (785)
Q Consensus 749 ~Rp~m~~vv~ 758 (785)
+||++.||++
T Consensus 273 ~Rps~~ell~ 282 (290)
T 1t4h_A 273 ERYSIKDLLN 282 (290)
T ss_dssp GSCCHHHHHT
T ss_pred hCCCHHHHhh
Confidence 9999999864
No 281
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=97.79 E-value=3.1e-06 Score=89.37 Aligned_cols=86 Identities=16% Similarity=0.056 Sum_probs=51.6
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+......+.++|||||||+++||+||+.|..-... ......++..............-..+.++...|.+.+|++
T Consensus 257 PE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~ 333 (373)
T 2x4f_A 257 PEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDND---AETLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSW 333 (373)
T ss_dssp HHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSH---HHHHHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCSSGGG
T ss_pred hhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHhccCCCChhhhccCCHHHHHHHHHHcCCChhh
Confidence 4555556778899999999999999999999530000 0000111111100000000000112456678999999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.|+++
T Consensus 334 Rps~~e~l~ 342 (373)
T 2x4f_A 334 RISASEALK 342 (373)
T ss_dssp SCCHHHHHH
T ss_pred CCCHHHHhc
Confidence 999999987
No 282
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=97.79 E-value=8.6e-06 Score=87.27 Aligned_cols=74 Identities=7% Similarity=-0.112 Sum_probs=47.4
Q ss_pred hhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931 674 VTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSM 753 (785)
Q Consensus 674 ~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m 753 (785)
.....+.++|||||||++.||+||+.|.+-... ......++.... . .. + .+.++...|.+.+|++||++
T Consensus 290 ~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~---~~~~~~~~~~~~-~---~~-~---~~~~li~~~l~~dP~~Rpt~ 358 (413)
T 3dzo_A 290 HPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAA---LGGSEWIFRSCK-N---IP-Q---PVRALLEGFLRYPKEDRLLP 358 (413)
T ss_dssp CCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGG---GSCSGGGGSSCC-C---CC-H---HHHHHHHHHTCSSGGGSCCH
T ss_pred cCcCCCchhhHHHHHHHHHHHHHCCCCCCCcch---hhhHHHHHhhcc-c---CC-H---HHHHHHHHHccCChhhCcCH
Confidence 444578899999999999999999999531111 011111111110 0 11 2 24456678999999999998
Q ss_pred HHHHH
Q 003931 754 RFVAQ 758 (785)
Q Consensus 754 ~~vv~ 758 (785)
.|+++
T Consensus 359 ~~~l~ 363 (413)
T 3dzo_A 359 LQAME 363 (413)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 77643
No 283
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=97.79 E-value=1.4e-06 Score=90.96 Aligned_cols=78 Identities=21% Similarity=0.353 Sum_probs=48.2
Q ss_pred cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCC-CCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPP-PTGQLAEAVVLTINVALACTSTTPDTRPSMR 754 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~-~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~ 754 (785)
...+.++|||||||+++|++||+.|.+-.. .......+++...... ..... -..+.++...|.+.+|++||++.
T Consensus 232 ~~~~~~~Di~slG~il~el~tg~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~li~~~l~~dp~~Rps~~ 306 (340)
T 3an0_A 232 KGYSVKSDIWSLGITMIELAILRFPYDSWG--TPFQQLKQVVEEPSPQLPADKF---SAEFVDFTSQCLKKNSKERPTYP 306 (340)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHTSCSSCCCS--CHHHHHHHHHHSCCCCCCGGGS---CHHHHHHHHHHTCSSGGGSCCHH
T ss_pred CCCCchhhHHHHHHHHHHHHHCCCCCcccc--chHHHHHHHhcCCCCCCCcccC---CHHHHHHHHHHccCCcccCcCHH
Confidence 356789999999999999999999964100 0000011111111000 00011 12345677889999999999999
Q ss_pred HHHH
Q 003931 755 FVAQ 758 (785)
Q Consensus 755 ~vv~ 758 (785)
||++
T Consensus 307 ell~ 310 (340)
T 3an0_A 307 ELMQ 310 (340)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 9976
No 284
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=97.78 E-value=1.3e-06 Score=90.48 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=47.7
Q ss_pred hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC----cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCC
Q 003931 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG----ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTT 746 (785)
Q Consensus 671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~----~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~ 746 (785)
|+-.....+.++|||||||++.|++||+.|.+-...... ......+...............-..+.++...|.+.+
T Consensus 179 E~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~d 258 (325)
T 3kn6_A 179 ELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVD 258 (325)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHTSCHHHHHHHHHHHCCC
T ss_pred HHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccCCCHHHHHHHHHHCCCC
Confidence 443445567899999999999999999999541110000 0001111111111111110111123456677899999
Q ss_pred CCCCCChHHHHH
Q 003931 747 PDTRPSMRFVAQ 758 (785)
Q Consensus 747 p~~Rp~m~~vv~ 758 (785)
|++||++.||++
T Consensus 259 P~~Rpt~~ell~ 270 (325)
T 3kn6_A 259 PNKRLKMSGLRY 270 (325)
T ss_dssp TTTCCCTTTSTT
T ss_pred hhHCCCHHHHhc
Confidence 999999999863
No 285
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=97.78 E-value=2e-06 Score=86.96 Aligned_cols=80 Identities=24% Similarity=0.328 Sum_probs=50.8
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccc--cCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVL--DQRLPPPTGQLAEAVVLTINVALACTSTTP 747 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~--d~~l~~~~~~~~~~~~~~~~ial~C~~~~p 747 (785)
+|.......+.++||||||++++|++||+.|.+-..... ....+. +...... ..+ .+.++...|.+.+|
T Consensus 176 PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~---~~~~~~~~~~~~~~~---~~~---~~~~li~~~l~~~p 246 (279)
T 3fdn_A 176 PEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQE---TYKRISRVEFTFPDF---VTE---GARDLISRLLKHNP 246 (279)
T ss_dssp HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHH---HHHHHHHTCCCCCTT---SCH---HHHHHHHHHCCSSG
T ss_pred HhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHH---HHHHHHhCCCCCCCc---CCH---HHHHHHHHHhccCh
Confidence 355555667889999999999999999999954111000 000010 1111110 111 23456778999999
Q ss_pred CCCCChHHHHH
Q 003931 748 DTRPSMRFVAQ 758 (785)
Q Consensus 748 ~~Rp~m~~vv~ 758 (785)
++||++.||++
T Consensus 247 ~~Rps~~e~l~ 257 (279)
T 3fdn_A 247 SQRPMLREVLE 257 (279)
T ss_dssp GGSCCHHHHHH
T ss_pred hhCCCHHHHhh
Confidence 99999999986
No 286
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=97.77 E-value=1.6e-06 Score=86.40 Aligned_cols=81 Identities=19% Similarity=0.214 Sum_probs=47.4
Q ss_pred hhhhhcc-cccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 671 ELAVTMR-VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 671 e~~~~~~-~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
|.-.... .+.++||||+||++.||+||+.|.+-... ......+......-+. ....+ +.++...|.+.+|++
T Consensus 181 E~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~---~~~~~~i~~~~~~~p~-~~s~~---~~~li~~~L~~dP~~ 253 (275)
T 3hyh_A 181 EVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESI---PVLFKNISNGVYTLPK-FLSPG---AAGLIKRMLIVNPLN 253 (275)
T ss_dssp HHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHTCCCCCT-TSCHH---HHHHHHHHSCSSGGG
T ss_pred hhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHHcCCCCCCC-CCCHH---HHHHHHHHccCChhH
Confidence 4433333 35789999999999999999999530000 0000011111111010 11112 234566899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
|||+.|+.+
T Consensus 254 R~s~~eil~ 262 (275)
T 3hyh_A 254 RISIHEIMQ 262 (275)
T ss_dssp SCCHHHHHH
T ss_pred CcCHHHHHc
Confidence 999999865
No 287
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=97.77 E-value=7.2e-06 Score=83.06 Aligned_cols=77 Identities=22% Similarity=0.294 Sum_probs=46.3
Q ss_pred cccccccceeeeehhhhhhhhCCCCCchhh--hccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGELIT--SLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSM 753 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~--~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m 753 (785)
...+.++||||||+++.|++||+.|..-.. .+... .....+........... .+.++...|.+.+|++||++
T Consensus 200 ~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~li~~~L~~dP~~Rps~ 273 (285)
T 3is5_A 200 RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQK---ATYKEPNYAVECRPLTP---QAVDLLKQMLTKDPERRPSA 273 (285)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHH---HHHCCCCCCC--CCCCH---HHHHHHHHHTCSCTTTSCCH
T ss_pred cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhh---hccCCcccccccCcCCH---HHHHHHHHHccCChhhCcCH
Confidence 356789999999999999999999954110 00000 00000111000000011 23466778999999999999
Q ss_pred HHHHH
Q 003931 754 RFVAQ 758 (785)
Q Consensus 754 ~~vv~ 758 (785)
.||++
T Consensus 274 ~e~l~ 278 (285)
T 3is5_A 274 AQVLH 278 (285)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 99864
No 288
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=97.77 E-value=4e-06 Score=86.64 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=50.6
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|.......+.++||||||+++.|++||+.|..-... ......+...............-..+.++...|.+.+|++
T Consensus 187 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~ 263 (321)
T 2a2a_A 187 PEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK---QETLANITSVSYDFDEEFFSHTSELAKDFIRKLLVKETRK 263 (321)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH---HHHHHHHHTTCCCCCHHHHTTCCHHHHHHHHTTSCSSTTT
T ss_pred cccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHHhcccccChhhhcccCHHHHHHHHHHcCCChhh
Confidence 3544556678899999999999999999999531000 0000001110000000000000112456778999999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.|+++
T Consensus 264 Rps~~e~l~ 272 (321)
T 2a2a_A 264 RLTIQEALR 272 (321)
T ss_dssp SCCHHHHHH
T ss_pred CcCHHHHhc
Confidence 999999975
No 289
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=97.76 E-value=4.5e-06 Score=89.05 Aligned_cols=88 Identities=16% Similarity=0.147 Sum_probs=50.5
Q ss_pred hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
|+-.....+.++|||||||++.||+||+.|..-...... ......+.......+.......-..+.++.-.|.+.+|++
T Consensus 233 E~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~ 312 (400)
T 1nxk_A 233 EVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQ 312 (400)
T ss_dssp GGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGG
T ss_pred hhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCCcccccCCHHHHHHHHHHCCCChhH
Confidence 444455678899999999999999999999531100000 0000000000000000000000112456678999999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.||++
T Consensus 313 Rpt~~eil~ 321 (400)
T 1nxk_A 313 RMTITEFMN 321 (400)
T ss_dssp SCCHHHHHH
T ss_pred CcCHHHHhc
Confidence 999999976
No 290
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=97.76 E-value=5.8e-06 Score=93.94 Aligned_cols=84 Identities=25% Similarity=0.382 Sum_probs=56.8
Q ss_pred hhhhhhcccccccceeeeehhhhhhhh-CCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMM-GRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALAC 742 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLEllt-gk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C 742 (785)
+|+......+.++|||||||++.|++| |+.|.. ....+.... .+.... .. -..+.++...|
T Consensus 561 PE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~------~~~~~~---~~---~~~l~~li~~~ 628 (656)
T 2j0j_A 561 PESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGE------RLPMPP---NC---PPTLYSLMTKC 628 (656)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTC------CCCCCT---TC---CHHHHHHHHHH
T ss_pred HHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCC------CCCCCc---cc---cHHHHHHHHHH
Confidence 455556678899999999999999997 888853 111111000 001111 11 12345677899
Q ss_pred CCCCCCCCCChHHHHHHHHhccc
Q 003931 743 TSTTPDTRPSMRFVAQELSAKTQ 765 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~~l~~~~~ 765 (785)
.+.+|++||+|.||+++|+++..
T Consensus 629 l~~dP~~RPs~~el~~~L~~il~ 651 (656)
T 2j0j_A 629 WAYDPSRRPRFTELKAQLSTILE 651 (656)
T ss_dssp TCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cCCChhHCcCHHHHHHHHHHHHH
Confidence 99999999999999999988743
No 291
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.75 E-value=1.1e-05 Score=73.29 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=34.1
Q ss_pred CCCEEEcccCcccccCCccccCCCCCCEEEcccCc-CcccCCccccCC----cccCeeeccccc-cccCCchhccCCCCC
Q 003931 151 NLQLVELFNNSFTGQIPSSLGQLKNLQHLDLRMNA-LNYTIPPELGLC----TNLSYLALAVNQ-LSGGLPLSLSNLSKL 224 (785)
Q Consensus 151 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~l~~n~-i~~~~~~~l~~l~~L 224 (785)
.|+.||+++|.++...-..+..+++|++|+|++|. ++...-..+..+ ++|++|++++|. +++.--..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 44555555554443333334445555555555543 332222222221 234444444442 433222333444444
Q ss_pred CEEEccCC
Q 003931 225 NDLGLSDN 232 (785)
Q Consensus 225 ~~L~L~~n 232 (785)
++|++++|
T Consensus 142 ~~L~L~~c 149 (176)
T 3e4g_A 142 KYLFLSDL 149 (176)
T ss_dssp CEEEEESC
T ss_pred CEEECCCC
Confidence 44444444
No 292
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=97.75 E-value=2.6e-06 Score=90.14 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=27.4
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
+|.-.....+.++|||||||++.|++||+.|.+
T Consensus 204 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~ 236 (373)
T 1q8y_A 204 PEVLLGAPWGCGADIWSTACLIFELITGDFLFE 236 (373)
T ss_dssp HHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC-
T ss_pred cHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence 355555667899999999999999999999954
No 293
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=97.74 E-value=5.8e-06 Score=84.82 Aligned_cols=89 Identities=17% Similarity=0.178 Sum_probs=51.5
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc----------hhhhccC---cccccc------cccCCCCCCCchh-H
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG---ELFLKD------VLDQRLPPPTGQL-A 729 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~---~~~~~~------~~d~~l~~~~~~~-~ 729 (785)
+|.-.....+.++|||||||++.|++||+.|.. +...... ..+... .+.+......... .
T Consensus 188 PE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (308)
T 3g33_A 188 PEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVP 267 (308)
T ss_dssp HHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSC
T ss_pred chHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChhhccchhhccccccCCCCCCcHHHhCc
Confidence 455556678899999999999999999999963 1110000 011000 0111100000000 0
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931 730 EAVVLTINVALACTSTTPDTRPSMRFVAQ 758 (785)
Q Consensus 730 ~~~~~~~~ial~C~~~~p~~Rp~m~~vv~ 758 (785)
+.-..+.++...|.+.+|++||++.|+++
T Consensus 268 ~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 268 EMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp SCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred cccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 00123456778899999999999999864
No 294
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=97.73 E-value=1.7e-05 Score=84.59 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=27.7
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
+|+-.....+.++|||||||++.||+||+.|.+
T Consensus 262 PE~~~~~~~~~~~DiwslG~il~elltg~~pf~ 294 (397)
T 1wak_A 262 LEVLIGSGYNTPADIWSTACMAFELATGDYLFE 294 (397)
T ss_dssp HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred ChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCC
Confidence 355555667899999999999999999999853
No 295
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=97.73 E-value=5.4e-06 Score=85.94 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=45.4
Q ss_pred ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931 679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQ 758 (785)
Q Consensus 679 t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv~ 758 (785)
+.++|||||||++.|++||+.|.+-... ......+.......+. .... .+.++.-.|.+.+|++||++.|+++
T Consensus 186 ~~~~DiwslG~il~~ll~g~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~s~---~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 186 GPEVDVWSCGIVLYVMLVGRLPFDDEFI---PNLFKKVNSCVYVMPD-FLSP---GAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp CHHHHHHHHHHHHHHHHHSSCSSBCSSS---TTCBCCCCSSCCCCCT-TSCH---HHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred CCccchhHHHHHHHHHHhCCCCCCCccH---HHHHHHHHcCCCCCcc-cCCH---HHHHHHHHHcCCChhHCcCHHHHHh
Confidence 5789999999999999999999641100 0001111111110010 1111 2345677899999999999999975
No 296
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=97.73 E-value=1.1e-05 Score=83.62 Aligned_cols=75 Identities=12% Similarity=0.243 Sum_probs=48.6
Q ss_pred hhhhhccc-ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 671 ELAVTMRV-TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 671 e~~~~~~~-t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
|+-..... +.++|||||||++.|++||+.|..-.. +..+.....+.... . .+.++...|.+.+|++
T Consensus 199 E~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~---------~~~~~~~~~~~~~~-~---~l~~li~~~L~~dP~~ 265 (335)
T 3dls_A 199 EVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELE---------ETVEAAIHPPYLVS-K---ELMSLVSGLLQPVPER 265 (335)
T ss_dssp HHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGG---------GGTTTCCCCSSCCC-H---HHHHHHHHHTCSSGGG
T ss_pred hhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHH---------HHHhhccCCCcccC-H---HHHHHHHHHccCChhh
Confidence 44334444 778999999999999999999953111 11111111111111 1 2345667899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.||++
T Consensus 266 Rps~~ell~ 274 (335)
T 3dls_A 266 RTTLEKLVT 274 (335)
T ss_dssp SCCHHHHHH
T ss_pred CcCHHHHhc
Confidence 999999976
No 297
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=97.72 E-value=9.3e-06 Score=83.40 Aligned_cols=93 Identities=20% Similarity=0.208 Sum_probs=52.5
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+......+.++|||||||++.|++||+.|.+-.... .....................-..+.++...|.+.+|++
T Consensus 188 PE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~ 264 (311)
T 3ork_A 188 PEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPV---SVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKNPEN 264 (311)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHHHHCCCCCHHHHSTTCCHHHHHHHHHHTCSSGGG
T ss_pred HHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH---HHHHHHhcCCCCCcccccCCCCHHHHHHHHHHHhcCHhh
Confidence 35555667788999999999999999999995310000 000000000000000000000112446678899999999
Q ss_pred CCChHHHH-HHHHhccc
Q 003931 750 RPSMRFVA-QELSAKTQ 765 (785)
Q Consensus 750 Rp~m~~vv-~~l~~~~~ 765 (785)
||++.+++ +.+.++..
T Consensus 265 R~~~~~~l~~~l~~~~~ 281 (311)
T 3ork_A 265 RYQTAAEMRADLVRVHN 281 (311)
T ss_dssp SCSSHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHHHhc
Confidence 99777655 45555443
No 298
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=97.72 E-value=6.3e-06 Score=87.02 Aligned_cols=85 Identities=18% Similarity=0.240 Sum_probs=50.4
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+-.....+.++||||+||++.||+||+.|..-......-..+.+...+.+.... ....+ +..+.-.|...+|++
T Consensus 316 PEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~-~~s~~---~~dli~~~L~~dP~~ 391 (423)
T 4fie_A 316 PELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLH-KVSPS---LKGFLDRLLVRDPAQ 391 (423)
T ss_dssp HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTT-SSCHH---HHHHHHHHSCSSTTT
T ss_pred HHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCcccc-cCCHH---HHHHHHHHcCCChhH
Confidence 45555566789999999999999999999995300000000001111112221111 11112 234566899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.|+.+
T Consensus 392 R~ta~ell~ 400 (423)
T 4fie_A 392 RATAAELLK 400 (423)
T ss_dssp SCCHHHHTT
T ss_pred CcCHHHHhc
Confidence 999998854
No 299
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=97.72 E-value=5.8e-06 Score=85.11 Aligned_cols=84 Identities=17% Similarity=0.279 Sum_probs=50.5
Q ss_pred hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR 750 (785)
Q Consensus 671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R 750 (785)
|+......+.++||||||+++.|++||+.|..-...............+....+ .... ..+.++...|.+.+|++|
T Consensus 195 E~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~l~~li~~~l~~dp~~R 270 (314)
T 3com_A 195 EVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFRKP-ELWS---DNFTDFVKQCLVKSPEQR 270 (314)
T ss_dssp HHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSG-GGSC---HHHHHHHHHHTCSCTTTS
T ss_pred hhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCcccCCc-ccCC---HHHHHHHHHHccCChhhC
Confidence 444455678899999999999999999999541110000000000001111100 0001 124466778999999999
Q ss_pred CChHHHHH
Q 003931 751 PSMRFVAQ 758 (785)
Q Consensus 751 p~m~~vv~ 758 (785)
|++.+|++
T Consensus 271 pt~~~ll~ 278 (314)
T 3com_A 271 ATATQLLQ 278 (314)
T ss_dssp CCHHHHTT
T ss_pred cCHHHHHh
Confidence 99999975
No 300
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=97.72 E-value=1.2e-05 Score=84.35 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=27.6
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
+|.-.....+.++|||||||++.||+||+.|..
T Consensus 208 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~ 240 (355)
T 2eu9_A 208 PEVILELGWAQPCDVWSIGCILFEYYRGFTLFQ 240 (355)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CeeeecCCCCCccchHHHHHHHHHHHhCCCCCC
Confidence 355455667899999999999999999999954
No 301
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=97.71 E-value=3.9e-06 Score=87.85 Aligned_cols=85 Identities=13% Similarity=0.121 Sum_probs=50.8
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+-.....+.++|||||||++.|++||+.|..-.. +.....+...............-..+.++...|.+.+|++
T Consensus 202 PE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~----~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~ 277 (351)
T 3c0i_A 202 PEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK----ERLFEGIIKGKYKMNPRQWSHISESAKDLVRRMLMLDPAE 277 (351)
T ss_dssp HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH----HHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHTCSSTTT
T ss_pred HHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH----HHHHHHHHcCCCCCCccccccCCHHHHHHHHHHCCCChhH
Confidence 354445567899999999999999999999953100 0000111111110000000000112446677899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.|+++
T Consensus 278 R~s~~e~l~ 286 (351)
T 3c0i_A 278 RITVYEALN 286 (351)
T ss_dssp SCCHHHHHT
T ss_pred CcCHHHHhc
Confidence 999999975
No 302
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=97.71 E-value=4.5e-06 Score=86.29 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=47.8
Q ss_pred cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccc-cccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKD-VLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR 754 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~-~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~ 754 (785)
...+.++|||||||++.|++||+.|.+-... .....+ +.+.............-..+.++...|.+.+|++||++.
T Consensus 194 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~ 270 (322)
T 2ycf_A 194 AGYNRAVDCWSLGVILFICLSGYPPFSEHRT---QVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTE 270 (322)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHSSCSSCSTTC---SSCHHHHHHHTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCCcccch---HHHHHHHHHhCccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHH
Confidence 4567899999999999999999999531100 000000 001111000000000112345677899999999999999
Q ss_pred HHHH
Q 003931 755 FVAQ 758 (785)
Q Consensus 755 ~vv~ 758 (785)
|+++
T Consensus 271 ~~l~ 274 (322)
T 2ycf_A 271 EALR 274 (322)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 9874
No 303
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=97.71 E-value=2.3e-06 Score=89.39 Aligned_cols=77 Identities=19% Similarity=0.297 Sum_probs=47.8
Q ss_pred hcccccccceeeeehhhhhhhhCCCCCch---hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCC
Q 003931 675 TMRVTDKCDVFSFGVVALEVMMGRHPGEL---ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRP 751 (785)
Q Consensus 675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~---~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp 751 (785)
....+.++|||||||+++||+||+.|..- ...+.. ...-..+..... ...+. +.++...|.+.+|++||
T Consensus 227 ~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~---l~~li~~~l~~dP~~Rp 298 (348)
T 1u5q_A 227 EGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYH---IAQNESPALQSG--HWSEY---FRNFVDSCLQKIPQDRP 298 (348)
T ss_dssp SCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHH---HHHSCCCCCCCT--TSCHH---HHHHHHHHTCSSGGGSC
T ss_pred CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHH---HHhcCCCCCCCC--CCCHH---HHHHHHHHcccChhhCc
Confidence 35678899999999999999999999531 000000 000001111110 11112 33566789999999999
Q ss_pred ChHHHHHH
Q 003931 752 SMRFVAQE 759 (785)
Q Consensus 752 ~m~~vv~~ 759 (785)
++.+|++.
T Consensus 299 s~~~ll~h 306 (348)
T 1u5q_A 299 TSEVLLKH 306 (348)
T ss_dssp CHHHHTTC
T ss_pred CHHHHhhC
Confidence 99998753
No 304
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=97.71 E-value=4.8e-06 Score=84.29 Aligned_cols=89 Identities=17% Similarity=0.225 Sum_probs=54.7
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+......+.++||||||+++.|++||+.|.+-.... .....+.......+. .... .+.++...|.+.+|++
T Consensus 181 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~~~~~~~~~~~-~~~~---~~~~li~~~l~~~p~~ 253 (284)
T 2vgo_A 181 PEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHT---ETHRRIVNVDLKFPP-FLSD---GSKDLISKLLRYHPPQ 253 (284)
T ss_dssp HHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHH---HHHHHHHTTCCCCCT-TSCH---HHHHHHHHHSCSSGGG
T ss_pred HHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHh---HHHHHHhccccCCCC-cCCH---HHHHHHHHHhhcCHhh
Confidence 35555566789999999999999999999995411000 000111111111110 1111 2345677899999999
Q ss_pred CCChHHHHH--HHHhccc
Q 003931 750 RPSMRFVAQ--ELSAKTQ 765 (785)
Q Consensus 750 Rp~m~~vv~--~l~~~~~ 765 (785)
||++.||++ .+.....
T Consensus 254 Rps~~~ll~h~~~~~~~~ 271 (284)
T 2vgo_A 254 RLPLKGVMEHPWVKANSR 271 (284)
T ss_dssp SCCHHHHHTCHHHHHHCC
T ss_pred CCCHHHHhhCHHHHhhcc
Confidence 999999986 4554443
No 305
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=97.71 E-value=3.8e-06 Score=88.44 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=28.0
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
+|+-.....+.++|||||||++.||+||+.|..
T Consensus 228 PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~ 260 (360)
T 3llt_A 228 PEVILNLGWDVSSDMWSFGCVLAELYTGSLLFR 260 (360)
T ss_dssp HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred cHHHcCCCCCCccchHHHHHHHHHHHHCCCCCC
Confidence 455556678899999999999999999999953
No 306
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=97.70 E-value=2.3e-06 Score=86.43 Aligned_cols=77 Identities=21% Similarity=0.259 Sum_probs=46.0
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|.-.....+.++||||+||++.||+||+.|..-... ......+.......+. ....+ +..+.-.|.+.+|++
T Consensus 195 PE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~---~~~~~~i~~~~~~~p~-~~s~~---~~~li~~~L~~dP~~ 267 (304)
T 3ubd_A 195 PEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDR---KETMTMILKAKLGMPQ-FLSPE---AQSLLRMLFKRNPAN 267 (304)
T ss_dssp HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCT-TSCHH---HHHHHHHHTCSSGGG
T ss_pred HHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCH---HHHHHHHHcCCCCCCC-cCCHH---HHHHHHHHcccCHHH
Confidence 4555566778999999999999999999999530000 0000111111111111 11112 234566899999999
Q ss_pred CCCh
Q 003931 750 RPSM 753 (785)
Q Consensus 750 Rp~m 753 (785)
||+.
T Consensus 268 R~ta 271 (304)
T 3ubd_A 268 RLGA 271 (304)
T ss_dssp STTC
T ss_pred CCCC
Confidence 9984
No 307
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=97.70 E-value=7.9e-06 Score=83.17 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=46.4
Q ss_pred cccccceeeeehhhhhhhhCCCCCchhhhccCc--ccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931 678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSGE--LFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF 755 (785)
Q Consensus 678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~--~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~ 755 (785)
.+.++||||||++++|++||+.|..-....... .....-..+.+... ... .+.++...|.+.+|++||++.|
T Consensus 202 ~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~li~~~l~~dp~~Rps~~~ 275 (295)
T 2clq_A 202 YGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMFKVHPEIPES---MSA---EAKAFILKCFEPDPDKRACAND 275 (295)
T ss_dssp CSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHHCCCCCCCTT---SCH---HHHHHHHHTTCSSTTTSCCHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhcccccccccccc---CCH---HHHHHHHHHccCChhhCCCHHH
Confidence 678999999999999999999995311000000 00000111222111 111 2345678899999999999999
Q ss_pred HHH
Q 003931 756 VAQ 758 (785)
Q Consensus 756 vv~ 758 (785)
|++
T Consensus 276 ll~ 278 (295)
T 2clq_A 276 LLV 278 (295)
T ss_dssp HHT
T ss_pred Hhc
Confidence 864
No 308
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=97.69 E-value=1.1e-05 Score=83.01 Aligned_cols=78 Identities=19% Similarity=0.258 Sum_probs=46.2
Q ss_pred hcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccc---cCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCC
Q 003931 675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVL---DQRLPPPTGQLAEAVVLTINVALACTSTTPDTRP 751 (785)
Q Consensus 675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~---d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp 751 (785)
....+.++|||||||++.|++||+.|.+-... .......+. .+.+.... .... .+.++...|.+.+|++||
T Consensus 203 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~---~l~~li~~~l~~dp~~Rp 276 (318)
T 2dyl_A 203 KPDYDIRADVWSLGISLVELATGQFPYKNCKT--DFEVLTKVLQEEPPLLPGHM-GFSG---DFQSFVKDCLTKDHRKRP 276 (318)
T ss_dssp ---CCTHHHHHHHHHHHHHHHHSSCTTTTCCS--HHHHHHHHHHSCCCCCCSSS-CCCH---HHHHHHHHHTCSCTTTSC
T ss_pred ccCCccccchhhHHHHHHHHHhCCCCCCCCCc--cHHHHHHHhccCCCCCCccC-CCCH---HHHHHHHHHccCChhHCc
Confidence 34567899999999999999999999531000 000000010 01111100 0111 234567789999999999
Q ss_pred ChHHHHH
Q 003931 752 SMRFVAQ 758 (785)
Q Consensus 752 ~m~~vv~ 758 (785)
++.||++
T Consensus 277 s~~~ll~ 283 (318)
T 2dyl_A 277 KYNKLLE 283 (318)
T ss_dssp CHHHHTT
T ss_pred CHHHHhh
Confidence 9999876
No 309
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=97.69 E-value=4.3e-06 Score=86.20 Aligned_cols=83 Identities=18% Similarity=0.201 Sum_probs=48.4
Q ss_pred cccccccceeeeehhhhhhhhCCCCCchh-----hhccCcc-------cccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGELI-----TSLSGEL-------FLKDVLDQRLPPPTGQLAEAVVLTINVALACT 743 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~-----~~~~~~~-------~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~ 743 (785)
...+.++|||||||++.||+||+.|..-. .|..... ....+.+.....+.......-..+.++...|.
T Consensus 201 ~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L 280 (316)
T 2ac3_A 201 SIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFESIQEGKYEFPDKDWAHISCAAKDLISKLL 280 (316)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHS
T ss_pred cCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHHHHhccCcccCchhcccCCHHHHHHHHHHh
Confidence 45788999999999999999999995311 0100000 00111111111100000000123456788999
Q ss_pred CCCCCCCCChHHHHH
Q 003931 744 STTPDTRPSMRFVAQ 758 (785)
Q Consensus 744 ~~~p~~Rp~m~~vv~ 758 (785)
+.+|++||++.||++
T Consensus 281 ~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 281 VRDAKQRLSAAQVLQ 295 (316)
T ss_dssp CSSTTTSCCHHHHHH
T ss_pred hCChhhCCCHHHHhc
Confidence 999999999999965
No 310
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=97.69 E-value=5.4e-06 Score=85.58 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=47.9
Q ss_pred hhhhhccc-ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 671 ELAVTMRV-TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 671 e~~~~~~~-t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
|+...... +.++|||||||++.|++||+.|.+-....... .....+.+ .+ .+.++...|.+.+|++
T Consensus 218 E~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~---~~~~~~~~-------~~---~~~~li~~~l~~dp~~ 284 (320)
T 3a99_A 218 EWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRG---QVFFRQRV-------SS---ECQHLIRWCLALRPSD 284 (320)
T ss_dssp HHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHHHHC---CCCCSSCC-------CH---HHHHHHHHHTCSSGGG
T ss_pred HHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhhhhcc---cccccccC-------CH---HHHHHHHHHccCChhh
Confidence 43333333 67899999999999999999995411110000 00011111 11 2346677899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.||++
T Consensus 285 Rps~~~ll~ 293 (320)
T 3a99_A 285 RPTFEEIQN 293 (320)
T ss_dssp SCCHHHHHT
T ss_pred CcCHHHHhc
Confidence 999999965
No 311
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=97.69 E-value=7.1e-06 Score=82.62 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=44.7
Q ss_pred ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCC-CCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHH
Q 003931 679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLP-PPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVA 757 (785)
Q Consensus 679 t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv 757 (785)
+.++||||||+++.|++||+.|.+-.... ......+...... ........ .+.++...|.+.+|++||++.||+
T Consensus 186 ~~~~Di~slG~il~~l~~g~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~li~~~l~~~p~~Rps~~~il 260 (276)
T 2yex_A 186 AEPVDVWSCGIVLTAMLAGELPWDQPSDS--CQEYSDWKEKKTYLNPWKKIDS---APLALLHKILVENPSARITIPDIK 260 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCSCSCTT--SHHHHHHHTTCTTSTTGGGSCH---HHHHHHHHHSCSSTTTSCCHHHHT
T ss_pred CCcchHHHHHHHHHHHHhCCCCCCCCchH--HHHHHHhhhcccccCchhhcCH---HHHHHHHHHCCCCchhCCCHHHHh
Confidence 67899999999999999999995411000 0000000000000 00001111 234667889999999999999986
Q ss_pred H
Q 003931 758 Q 758 (785)
Q Consensus 758 ~ 758 (785)
+
T Consensus 261 ~ 261 (276)
T 2yex_A 261 K 261 (276)
T ss_dssp T
T ss_pred c
Confidence 4
No 312
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=97.68 E-value=4.4e-06 Score=85.06 Aligned_cols=82 Identities=16% Similarity=0.252 Sum_probs=50.7
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|.......+.++||||||+++.|++||+.|.+-.... .....+.......+. .... .+.++...|.+.+|++
T Consensus 184 PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~-~~~~---~~~~li~~~l~~~p~~ 256 (294)
T 2rku_A 184 PEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK---ETYLRIKKNEYSIPK-HINP---VAASLIQKMLQTDPTA 256 (294)
T ss_dssp HHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH---HHHHHHHTTCCCCCT-TSCH---HHHHHHHHHTCSSGGG
T ss_pred cchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH---HHHHHHhhccCCCcc-ccCH---HHHHHHHHHcccChhh
Confidence 35545556788999999999999999999995411000 000001111111000 1111 2345677899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.||++
T Consensus 257 Rps~~~ll~ 265 (294)
T 2rku_A 257 RPTINELLN 265 (294)
T ss_dssp SCCGGGGGG
T ss_pred CcCHHHHhh
Confidence 999999976
No 313
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=97.68 E-value=2e-06 Score=86.64 Aligned_cols=73 Identities=19% Similarity=0.211 Sum_probs=44.3
Q ss_pred ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931 679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQ 758 (785)
Q Consensus 679 t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv~ 758 (785)
+.++||||||+++.|++||+.|.+-.... .....+.......+. .... .+.++...|.+.+|++||++.|+++
T Consensus 190 ~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~~~~~~~~~~~-~~~~---~~~~li~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 190 GPEVDVWSCGVILYVMLCRRLPFDDESIP---VLFKNISNGVYTLPK-FLSP---GAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp -THHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHHTCCCCCT-TSCH---HHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CcccchHHHHHHHHHHHhCCCCCCCCCHH---HHHHHHHhCCCCCCc-cCCH---HHHHHHHHHhhcCHhHCCCHHHHhh
Confidence 68999999999999999999996410000 000000010000000 0011 2346678899999999999999864
No 314
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=97.68 E-value=3.1e-06 Score=88.11 Aligned_cols=86 Identities=15% Similarity=0.220 Sum_probs=49.4
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCC--CC-CchhHHHHHHHHHHHhhcCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLP--PP-TGQLAEAVVLTINVALACTSTT 746 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~--~~-~~~~~~~~~~~~~ial~C~~~~ 746 (785)
+|+-.....+.++|||||||++.||+||+.|..-...-........+...... .. .....+ .+.++.-.|.+.+
T Consensus 189 PE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~s~---~~~~li~~~L~~d 265 (342)
T 2qr7_A 189 PEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSD---TAKDLVSKMLHVD 265 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTTTSCH---HHHHHHHHHTCSS
T ss_pred HHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCccccccCCH---HHHHHHHHHCCCC
Confidence 34444455678999999999999999999995310000000000001111110 00 001112 2345667899999
Q ss_pred CCCCCChHHHHH
Q 003931 747 PDTRPSMRFVAQ 758 (785)
Q Consensus 747 p~~Rp~m~~vv~ 758 (785)
|++||++.||++
T Consensus 266 P~~R~t~~~il~ 277 (342)
T 2qr7_A 266 PHQRLTAALVLR 277 (342)
T ss_dssp TTTSCCHHHHTT
T ss_pred hhHCcCHHHHhc
Confidence 999999999875
No 315
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=97.66 E-value=2.9e-06 Score=88.40 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=47.9
Q ss_pred hhhhhcc-cccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 671 ELAVTMR-VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 671 e~~~~~~-~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
|+-.... .+.++||||+||++.||+||+.|.+-.... .....+.......+.... . .+..+.-.|.+.+|++
T Consensus 179 E~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~---~~~~~i~~~~~~~p~~~s-~---~~~~li~~~L~~dP~~ 251 (347)
T 3zgw_A 179 ELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVM---ALYKKIMRGKYDVPKWLS-P---SSILLLQQMLQVDPKK 251 (347)
T ss_dssp HHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHHTCCCCCTTCC-H---HHHHHHHHHTCSSGGG
T ss_pred HHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHH---HHHHHHHcCCCCCCCCCC-H---HHHHHHHHHcccCHhH
Confidence 4333333 478999999999999999999996410000 000111111111111011 1 2335677899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.||++
T Consensus 252 Rps~~eil~ 260 (347)
T 3zgw_A 252 RISMKNLLN 260 (347)
T ss_dssp SCCHHHHHT
T ss_pred CcCHHHHhc
Confidence 999999976
No 316
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=97.66 E-value=1e-05 Score=83.06 Aligned_cols=83 Identities=14% Similarity=0.233 Sum_probs=48.2
Q ss_pred cccccccceeeeehhhhhhhhCCCCCc----------hhhhccC-----------ccccc--ccccCCCCCCCch-hHHH
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG-----------ELFLK--DVLDQRLPPPTGQ-LAEA 731 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~-----------~~~~~--~~~d~~l~~~~~~-~~~~ 731 (785)
...+.++|||||||++.|++||+.|.. +...... ..... .+-++.-...... ....
T Consensus 178 ~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (311)
T 4agu_A 178 TQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQYFSGVKIPDPEDMEPLELKFPNI 257 (311)
T ss_dssp SCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGGGTTCCCCCCSSCCCHHHHCTTC
T ss_pred CCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccccccCcCCCccccchhhhhcccc
Confidence 456889999999999999999999953 0000000 00000 0111110000000 0001
Q ss_pred HHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931 732 VVLTINVALACTSTTPDTRPSMRFVAQ 758 (785)
Q Consensus 732 ~~~~~~ial~C~~~~p~~Rp~m~~vv~ 758 (785)
-..+.++...|.+.+|++||++.||++
T Consensus 258 ~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 258 SYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp CHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred cHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 123557788999999999999999975
No 317
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=97.66 E-value=1.1e-05 Score=87.10 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=49.2
Q ss_pred cccccccceeeeehhhhhhhh-CCCCCchhhhccCcccccccccC-CCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931 676 MRVTDKCDVFSFGVVALEVMM-GRHPGELITSLSGELFLKDVLDQ-RLPPPTGQLAEAVVLTINVALACTSTTPDTRPSM 753 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLEllt-gk~p~~~~~~~~~~~~~~~~~d~-~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m 753 (785)
...+.++|||||||++.|++| |+.|.+-... ..........+. ..... .....-..+.++...|.+.+|++||+|
T Consensus 214 ~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~-~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~li~~~L~~dP~~Rps~ 290 (434)
T 2rio_A 214 RRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS-RESNIIRGIFSLDEMKCL--HDRSLIAEATDLISQMIDHDPLKRPTA 290 (434)
T ss_dssp CCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT-HHHHHHHTCCCCCCCTTC--CCHHHHHHHHHHHHHHTCSSGGGSCCH
T ss_pred cCcchhhhhHhHHHHHHHHHhCCCCCCCCchh-hHHHHhcCCCCccccccc--ccccchHHHHHHHHHHhhCChhhCCCH
Confidence 567899999999999999999 8998531000 000000001110 01000 111122345677889999999999999
Q ss_pred HHHHH
Q 003931 754 RFVAQ 758 (785)
Q Consensus 754 ~~vv~ 758 (785)
.||++
T Consensus 291 ~eil~ 295 (434)
T 2rio_A 291 MKVLR 295 (434)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99975
No 318
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=97.66 E-value=1.8e-05 Score=85.12 Aligned_cols=32 Identities=22% Similarity=0.298 Sum_probs=27.9
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPG 701 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~ 701 (785)
+|+......+.++|||||||++.||+||+.|.
T Consensus 268 PE~~~~~~~~~~~DiwSlG~il~elltG~~pf 299 (429)
T 3kvw_A 268 PEVILGARYGMPIDMWSLGCILAELLTGYPLL 299 (429)
T ss_dssp HHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred hHHHhCCCCCchHHHHhHHHHHHHHHhCCCCC
Confidence 46666677899999999999999999999885
No 319
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=97.65 E-value=6.1e-06 Score=88.61 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=47.4
Q ss_pred cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccc-cccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKD-VLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR 754 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~-~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~ 754 (785)
...+.++|||||||++.|++||+.|..-.. ......+ +...............-..+.++...|.+.+|++||++.
T Consensus 319 ~~~~~~~DiwslG~il~~lltg~~pf~~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ 395 (419)
T 3i6u_A 319 AGYNRAVDCWSLGVILFICLSGYPPFSEHR---TQVSLKDQITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTE 395 (419)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHSSCSSCCCS---SSCCHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHH
T ss_pred CCCCchhhhHhHHHHHHHHHHCCCCCCCCc---chHHHHHHHhcCCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHH
Confidence 445789999999999999999999953100 0000000 011111000000000112345677889999999999999
Q ss_pred HHHH
Q 003931 755 FVAQ 758 (785)
Q Consensus 755 ~vv~ 758 (785)
|+++
T Consensus 396 e~l~ 399 (419)
T 3i6u_A 396 EALR 399 (419)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9864
No 320
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=97.65 E-value=1.2e-05 Score=81.77 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=25.1
Q ss_pred hhhhhcc-cccccceeeeehhhhhhhhCCCCC
Q 003931 671 ELAVTMR-VTDKCDVFSFGVVALEVMMGRHPG 701 (785)
Q Consensus 671 e~~~~~~-~t~k~DVYSfGvvlLElltgk~p~ 701 (785)
|+-.... .+.++|||||||++.|++||+.|.
T Consensus 171 E~~~~~~~~~~~~DiwslG~il~~l~~~~~p~ 202 (292)
T 3o0g_A 171 DVLFGAKLYSTSIDMWSAGCIFAELANAGRPL 202 (292)
T ss_dssp HHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCS
T ss_pred HHHcCCCCcCchHHHHHHHHHHHHHHHcCCCC
Confidence 4433333 688999999999999999999983
No 321
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=97.64 E-value=8e-06 Score=88.08 Aligned_cols=80 Identities=13% Similarity=0.135 Sum_probs=50.0
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT 743 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~ 743 (785)
+|.-.....+.++||||+||++.|++||+.|.. +...+.... .+.-.+... .... .+.++...|.
T Consensus 182 PE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~--~~~~~~~~~----~~s~---~~~~li~~~L 252 (444)
T 3soa_A 182 PEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGA--YDFPSPEWD----TVTP---EAKDLINKML 252 (444)
T ss_dssp HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTC--CCCCTTTTT----TSCH---HHHHHHHHHS
T ss_pred HHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCC--CCCCccccc----cCCH---HHHHHHHHHc
Confidence 354445567889999999999999999999952 111110000 000011110 1111 2345667899
Q ss_pred CCCCCCCCChHHHHH
Q 003931 744 STTPDTRPSMRFVAQ 758 (785)
Q Consensus 744 ~~~p~~Rp~m~~vv~ 758 (785)
+.+|++||++.|+++
T Consensus 253 ~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 253 TINPSKRITAAEALK 267 (444)
T ss_dssp CSSTTTSCCHHHHHH
T ss_pred CCChhHCCCHHHHhc
Confidence 999999999999976
No 322
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=97.64 E-value=6e-06 Score=86.94 Aligned_cols=79 Identities=13% Similarity=0.198 Sum_probs=46.7
Q ss_pred ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV 756 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v 756 (785)
..+.++|||||||++.|++||+.|..-... ......+...............-..+.++...|.+.+|++||++.||
T Consensus 281 ~~~~~~Di~slG~il~ell~g~~pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~el 357 (365)
T 2y7j_A 281 GYGKEVDLWACGVILFTLLAGSPPFWHRRQ---ILMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQA 357 (365)
T ss_dssp CBCTTHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHH
T ss_pred CCCchhhHHhHHHHHHHHHHCCCCCCCCCH---HHHHHHHHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHH
Confidence 467899999999999999999999531000 00000011111100000000001234567788999999999999998
Q ss_pred HH
Q 003931 757 AQ 758 (785)
Q Consensus 757 v~ 758 (785)
++
T Consensus 358 l~ 359 (365)
T 2y7j_A 358 LQ 359 (365)
T ss_dssp HH
T ss_pred hc
Confidence 65
No 323
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=97.64 E-value=4.2e-06 Score=84.41 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=47.0
Q ss_pred ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV 756 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v 756 (785)
..+.++||||||++++|++||+.|..-... ......+.......+.......-..+.++...|.+.+|++||++.|+
T Consensus 183 ~~~~~~Di~slG~~l~~l~~g~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~ 259 (277)
T 3f3z_A 183 LYGPECDEWSAGVMMYVLLCGYPPFSAPTD---SEVMLKIREGTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQA 259 (277)
T ss_dssp CBCTTHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred cCCchhhehhHHHHHHHHHHCCCCCCCCCH---HHHHHHHHhCCCCCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 478899999999999999999999531000 00000111111100000000001234466788999999999999998
Q ss_pred HH
Q 003931 757 AQ 758 (785)
Q Consensus 757 v~ 758 (785)
++
T Consensus 260 l~ 261 (277)
T 3f3z_A 260 LE 261 (277)
T ss_dssp TT
T ss_pred hc
Confidence 75
No 324
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=97.63 E-value=5.5e-06 Score=87.06 Aligned_cols=86 Identities=10% Similarity=0.107 Sum_probs=50.0
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+......+.++|||||||++.||+||+.|..-... ......+.......+.......-..+.++...|.+.+|++
T Consensus 199 PE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~ 275 (362)
T 2bdw_A 199 PEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ---HRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSMLTVNPKK 275 (362)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHTCCCCCTTGGGGSCHHHHHHHHHHSCSSGGG
T ss_pred HHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH---HHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHcCCChhh
Confidence 3555555678899999999999999999999520000 0000000000000000000000112345677899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.|+++
T Consensus 276 R~t~~e~l~ 284 (362)
T 2bdw_A 276 RITADQALK 284 (362)
T ss_dssp SCCHHHHTT
T ss_pred CcCHHHHhc
Confidence 999999865
No 325
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=97.63 E-value=7.7e-06 Score=83.60 Aligned_cols=80 Identities=19% Similarity=0.239 Sum_probs=47.3
Q ss_pred hcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931 675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR 754 (785)
Q Consensus 675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~ 754 (785)
....+.++||||||+++.|++||+.|.+-...............+....+ .... ..+.++...|.+.+|++||++.
T Consensus 196 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~l~~li~~~l~~dp~~Rps~~ 271 (302)
T 2j7t_A 196 DTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPTLLTP-SKWS---VEFRDFLKIALDKNPETRPSAA 271 (302)
T ss_dssp STTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSSG-GGSC---HHHHHHHHHHSCSCTTTSCCHH
T ss_pred CCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCCcccCCc-cccC---HHHHHHHHHHcccChhhCCCHH
Confidence 34567899999999999999999999641110000000000000111000 0111 1244667789999999999999
Q ss_pred HHHH
Q 003931 755 FVAQ 758 (785)
Q Consensus 755 ~vv~ 758 (785)
+|++
T Consensus 272 ~ll~ 275 (302)
T 2j7t_A 272 QLLE 275 (302)
T ss_dssp HHTT
T ss_pred HHhc
Confidence 9854
No 326
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=97.63 E-value=6.1e-06 Score=85.90 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=27.5
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
+|.-.....+.++|||||||++.|++||+.|..
T Consensus 203 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~ 235 (339)
T 1z57_A 203 PEVILALGWSQPCDVWSIGCILIEYYLGFTVFP 235 (339)
T ss_dssp HHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred hHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCC
Confidence 355555667899999999999999999999953
No 327
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=97.62 E-value=8.8e-06 Score=84.02 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=44.9
Q ss_pred ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCC-CCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHH
Q 003931 679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLP-PPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVA 757 (785)
Q Consensus 679 t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~-~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv 757 (785)
+.++|||||||++.|++||+.|.+-.... .....+....... ....... ..+.++...|.+.+|++||++.||+
T Consensus 186 ~~~~DiwslG~il~~ll~g~~pf~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~li~~~L~~dP~~R~t~~eil 260 (323)
T 3tki_A 186 AEPVDVWSCGIVLTAMLAGELPWDQPSDS--CQEYSDWKEKKTYLNPWKKID---SAPLALLHKILVENPSARITIPDIK 260 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSCSSSCTT--SHHHHHHHTTCTTSTTGGGSC---HHHHHHHHHHSCSSTTTSCCHHHHT
T ss_pred CCcccHHHHHHHHHHHHhCCCCCCCCchH--HHHHHHHhcccccCCccccCC---HHHHHHHHHHccCChhhCcCHHHHh
Confidence 67899999999999999999995310000 0000000000000 0000111 1234667789999999999999986
Q ss_pred H
Q 003931 758 Q 758 (785)
Q Consensus 758 ~ 758 (785)
+
T Consensus 261 ~ 261 (323)
T 3tki_A 261 K 261 (323)
T ss_dssp T
T ss_pred h
Confidence 5
No 328
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=97.62 E-value=1e-05 Score=83.06 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=23.8
Q ss_pred cccccccceeeeehhhhhhhhCCCCCc
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
...+.++||||+||++.|++||+.|..
T Consensus 195 ~~~~~~~DiwslG~il~~ll~g~~pf~ 221 (311)
T 3niz_A 195 KKYSTSVDIWSIGCIFAEMITGKPLFP 221 (311)
T ss_dssp CSCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCCCchHHhHHHHHHHHHHHhCCCCCC
Confidence 356889999999999999999999853
No 329
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=97.62 E-value=6.1e-06 Score=87.38 Aligned_cols=80 Identities=13% Similarity=0.138 Sum_probs=51.1
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT 743 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~ 743 (785)
+|+......+.++|||||||++.||+||+.|.. ....+....+ ..++.... ... ..+.++...|.
T Consensus 219 PE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~---~~~~~~~~---~~s---~~~~~li~~~L 289 (387)
T 1kob_A 219 PEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDW---EFDEDAFS---SVS---PEAKDFIKNLL 289 (387)
T ss_dssp HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCC---CCCSSTTT---TSC---HHHHHHHHTTS
T ss_pred chhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC---CCCccccc---cCC---HHHHHHHHHHc
Confidence 355555667889999999999999999999953 1111100000 01111100 011 12446678999
Q ss_pred CCCCCCCCChHHHHH
Q 003931 744 STTPDTRPSMRFVAQ 758 (785)
Q Consensus 744 ~~~p~~Rp~m~~vv~ 758 (785)
+.+|++||++.|+++
T Consensus 290 ~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 290 QKEPRKRLTVHDALE 304 (387)
T ss_dssp CSSGGGSCCHHHHHT
T ss_pred CCChhHCcCHHHHhh
Confidence 999999999999975
No 330
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=97.62 E-value=6.3e-06 Score=85.53 Aligned_cols=81 Identities=17% Similarity=0.256 Sum_probs=51.1
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+-.....+.++|||||||++.|++||..|..-.... ...+...... .........+.++...|.+.+|++
T Consensus 245 PE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~~-----~~~~~~~~~~---~~~~~~~~~~~~li~~~l~~~p~~ 316 (332)
T 3qd2_B 245 PEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVRI-----ITDVRNLKFP---LLFTQKYPQEHMMVQDMLSPSPTE 316 (332)
T ss_dssp HHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHHH-----HHHHHTTCCC---HHHHHHCHHHHHHHHHHHCSSGGG
T ss_pred hHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHHH-----HHHhhccCCC---cccccCChhHHHHHHHHccCCCCc
Confidence 35555567789999999999999999998874311000 0001111110 011111223456778899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.||++
T Consensus 317 Rps~~~~l~ 325 (332)
T 3qd2_B 317 RPEATDIIE 325 (332)
T ss_dssp SCCHHHHHH
T ss_pred CCCHHHHhh
Confidence 999999874
No 331
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=97.61 E-value=4.2e-06 Score=85.78 Aligned_cols=79 Identities=19% Similarity=0.155 Sum_probs=48.0
Q ss_pred cccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHH
Q 003931 678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVA 757 (785)
Q Consensus 678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv 757 (785)
.+.++||||||+++.|++||+.|.+-.... .....+.......+. ... ..+.++...|.+.+|++||++.|++
T Consensus 190 ~~~~~Di~slG~il~~l~~g~~p~~~~~~~---~~~~~i~~~~~~~~~-~~~---~~l~~li~~~l~~dp~~Rps~~~ll 262 (305)
T 2wtk_C 190 SGFKVDIWSAGVTLYNITTGLYPFEGDNIY---KLFENIGKGSYAIPG-DCG---PPLSDLLKGMLEYEPAKRFSIRQIR 262 (305)
T ss_dssp ESHHHHHHHHHHHHHHHHHSSCSCCCSSHH---HHHHHHHHCCCCCCS-SSC---HHHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHHHHHhCCCCCCCchHH---HHHHHHhcCCCCCCC-ccC---HHHHHHHHHHccCChhhCCCHHHHh
Confidence 467999999999999999999995410000 000000011110000 111 1234667789999999999999998
Q ss_pred H--HHHhc
Q 003931 758 Q--ELSAK 763 (785)
Q Consensus 758 ~--~l~~~ 763 (785)
+ .+.+.
T Consensus 263 ~~~~~~~~ 270 (305)
T 2wtk_C 263 QHSWFRKK 270 (305)
T ss_dssp HSHHHHSC
T ss_pred cCcccccC
Confidence 6 35443
No 332
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=97.60 E-value=1.4e-05 Score=82.63 Aligned_cols=89 Identities=17% Similarity=0.260 Sum_probs=51.1
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc----------hhhhccC---ccccccc------ccCCCCCCCch-hH
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG---ELFLKDV------LDQRLPPPTGQ-LA 729 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~---~~~~~~~------~d~~l~~~~~~-~~ 729 (785)
+|+......+.++|||||||++.|++||+.|.+ ++..... ..+..+. +.......... ..
T Consensus 188 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (326)
T 1blx_A 188 PEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVT 267 (326)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCC
T ss_pred HHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCcccCccccccchhhhcccCcchhhhccc
Confidence 355555667899999999999999999999954 1110000 0010000 00000000000 00
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931 730 EAVVLTINVALACTSTTPDTRPSMRFVAQ 758 (785)
Q Consensus 730 ~~~~~~~~ial~C~~~~p~~Rp~m~~vv~ 758 (785)
..-..+.++...|.+.+|++||++.|+++
T Consensus 268 ~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 268 DIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp SCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 00112346778999999999999999974
No 333
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=97.60 E-value=4.3e-06 Score=84.25 Aligned_cols=73 Identities=15% Similarity=0.224 Sum_probs=45.2
Q ss_pred ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931 679 TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVAQ 758 (785)
Q Consensus 679 t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv~ 758 (785)
+.++||||||+++.|++||+.|.+-.... .....+.......+. ... ..+.++...|.+.+|++||++.||++
T Consensus 189 ~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~-~~~---~~l~~li~~~l~~~p~~Rps~~~~l~ 261 (276)
T 2h6d_A 189 GPEVDIWSCGVILYALLCGTLPFDDEHVP---TLFKKIRGGVFYIPE-YLN---RSVATLLMHMLQVDPLKRATIKDIRE 261 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHHCCCCCCT-TSC---HHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred CccchHHHHHHHHHHHHhCCCCCCCCcHH---HHHHHhhcCcccCch-hcC---HHHHHHHHHHccCChhhCCCHHHHHh
Confidence 67899999999999999999995411000 000000000000000 001 12446678899999999999999976
No 334
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=97.60 E-value=6.3e-06 Score=84.36 Aligned_cols=75 Identities=12% Similarity=0.198 Sum_probs=47.2
Q ss_pred hcccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 675 TMRVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 675 ~~~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
....+.++||||+|+++.|++||+.|.. +...+... . .. .+..... ... ..+.++...|.+.+|+
T Consensus 181 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~-~-~~-~~~~~~~---~~~---~~~~~li~~~l~~dp~ 251 (304)
T 2jam_A 181 QKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEG-Y-YE-FESPFWD---DIS---ESAKDFICHLLEKDPN 251 (304)
T ss_dssp SCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHC-C-CC-CCTTTTT---TSC---HHHHHHHHHHHCSSTT
T ss_pred cCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcC-C-CC-CCccccc---cCC---HHHHHHHHHHcCCChh
Confidence 4456789999999999999999999953 11111000 0 00 0000000 011 1244667789999999
Q ss_pred CCCChHHHHH
Q 003931 749 TRPSMRFVAQ 758 (785)
Q Consensus 749 ~Rp~m~~vv~ 758 (785)
+||++.|+++
T Consensus 252 ~Rps~~~~l~ 261 (304)
T 2jam_A 252 ERYTCEKALS 261 (304)
T ss_dssp TSCCHHHHHT
T ss_pred HCcCHHHHhc
Confidence 9999999976
No 335
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=97.60 E-value=1e-05 Score=83.88 Aligned_cols=82 Identities=18% Similarity=0.253 Sum_probs=48.6
Q ss_pred ccccccceeeeehhhhhhhhCCCCCc-------hhhhc---cC-----------cccccccccCCCCCCCchhH---HHH
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGE-------LITSL---SG-----------ELFLKDVLDQRLPPPTGQLA---EAV 732 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~---~~-----------~~~~~~~~d~~l~~~~~~~~---~~~ 732 (785)
..+.++||||+||++.|++||+.|.. +...+ .. .........+.+........ ..-
T Consensus 201 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (331)
T 4aaa_A 201 KYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKNPVFAGVRLPEIKEREPLERRYPKLS 280 (331)
T ss_dssp TCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHCGGGTTCCCCCCSSCCCHHHHSTTSC
T ss_pred CcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhccccccccCccccccchhhhcccchh
Confidence 56889999999999999999999853 00000 00 00011111111111100000 011
Q ss_pred HHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931 733 VLTINVALACTSTTPDTRPSMRFVAQ 758 (785)
Q Consensus 733 ~~~~~ial~C~~~~p~~Rp~m~~vv~ 758 (785)
..+.++...|.+.+|++||++.||++
T Consensus 281 ~~l~~li~~~L~~dP~~Rpt~~ell~ 306 (331)
T 4aaa_A 281 EVVIDLAKKCLHIDPDKRPFCAELLH 306 (331)
T ss_dssp HHHHHHHHHHTCSSGGGSCCGGGGGG
T ss_pred HHHHHHHHHHhccCcccCCCHHHHhc
Confidence 23557788999999999999999865
No 336
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=97.59 E-value=1.2e-05 Score=84.67 Aligned_cols=88 Identities=14% Similarity=0.062 Sum_probs=51.2
Q ss_pred ccccccceeeeehhhhhhhhCCCCCc----------hhhhccCc-ccccccccCCC--------CCCCc------hhHHH
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSGE-LFLKDVLDQRL--------PPPTG------QLAEA 731 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~~-~~~~~~~d~~l--------~~~~~------~~~~~ 731 (785)
..+.++|||||||+++|++||+.|.. +++..... .....-+++.. ..... .....
T Consensus 208 ~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (360)
T 3e3p_A 208 HYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKD 287 (360)
T ss_dssp SCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTT
T ss_pred CCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccc
Confidence 47899999999999999999999953 11111000 00000001100 00000 00001
Q ss_pred HHHHHHHHhhcCCCCCCCCCChHHHHH--HHHhcc
Q 003931 732 VVLTINVALACTSTTPDTRPSMRFVAQ--ELSAKT 764 (785)
Q Consensus 732 ~~~~~~ial~C~~~~p~~Rp~m~~vv~--~l~~~~ 764 (785)
-..+.++...|.+.+|++||++.||++ ++.++.
T Consensus 288 ~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~ 322 (360)
T 3e3p_A 288 AKEAYDLLSALLQYLPEERMKPYEALCHPYFDELH 322 (360)
T ss_dssp HHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGG
T ss_pred cHHHHHHHHHHhccCccccCCHHHHhcCccccccC
Confidence 234567788999999999999999976 345443
No 337
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=97.59 E-value=1e-05 Score=82.05 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=44.8
Q ss_pred ccccccceeeeehhhhhhhhCCCCCch-hhh--ccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCCh
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGEL-ITS--LSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSM 753 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~~-~~~--~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m 753 (785)
..+.++|||||||++.|++||+.|..- ..+ +. .... +.+... ... .+.++...|.+.+|++||++
T Consensus 207 ~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~---~~~---~~~~li~~~l~~dp~~Rps~ 274 (289)
T 1x8b_A 207 THLPKADIFALALTVVCAAGAEPLPRNGDQWHEIR-QGRL-----PRIPQV---LSQ---EFTELLKVMIHPDPERRPSA 274 (289)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCCCCCSSSHHHHHHH-TTCC-----CCCSSC---CCH---HHHHHHHHHTCSSGGGSCCH
T ss_pred CCCchhhHHHHHHHHHHHhcCCCCCcchhHHHHHH-cCCC-----CCCCcc---cCH---HHHHHHHHHhCCCcccCCCH
Confidence 456799999999999999999876321 000 00 0000 111111 111 24466778999999999999
Q ss_pred HHHHH
Q 003931 754 RFVAQ 758 (785)
Q Consensus 754 ~~vv~ 758 (785)
.||++
T Consensus 275 ~~ll~ 279 (289)
T 1x8b_A 275 MALVK 279 (289)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 99864
No 338
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=97.57 E-value=1.6e-05 Score=81.75 Aligned_cols=75 Identities=20% Similarity=0.349 Sum_probs=48.0
Q ss_pred hhhhhccc-ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 671 ELAVTMRV-TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 671 e~~~~~~~-t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
|+...... +.++||||||+++.|++||+.|.+-.. ++.+....... .... .+.++...|.+.+|++
T Consensus 208 E~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~---------~~~~~~~~~~~-~~~~---~~~~li~~~l~~~p~~ 274 (312)
T 2iwi_A 208 EWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQ---------EILEAELHFPA-HVSP---DCCALIRRCLAPKPSS 274 (312)
T ss_dssp HHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH---------HHHHTCCCCCT-TSCH---HHHHHHHHHTCSSTTT
T ss_pred eeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChH---------HHhhhccCCcc-cCCH---HHHHHHHHHccCChhh
Confidence 43333333 458999999999999999999954111 11111111110 1111 2345677899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.||++
T Consensus 275 Rps~~e~l~ 283 (312)
T 2iwi_A 275 RPSLEEILL 283 (312)
T ss_dssp SCCHHHHHH
T ss_pred CcCHHHHhc
Confidence 999999976
No 339
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=97.57 E-value=8.8e-06 Score=82.49 Aligned_cols=79 Identities=19% Similarity=0.147 Sum_probs=46.8
Q ss_pred ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV 756 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v 756 (785)
..+.++||||||+++.|++||+.|..-.... .....+...............-..+.++...|.+.+|++||++.|+
T Consensus 198 ~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el 274 (287)
T 2wei_A 198 TYDEKCDVWSAGVILYILLSGTPPFYGKNEY---DILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQC 274 (287)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHHCCCCCCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred CCCCchhhHhHHHHHHHHHhCCCCCCCCCHH---HHHHHHHcCCCCCCchhhhhcCHHHHHHHHHHcccChhhCcCHHHH
Confidence 4678999999999999999999995310000 0000000000000000000001124567788999999999999999
Q ss_pred HH
Q 003931 757 AQ 758 (785)
Q Consensus 757 v~ 758 (785)
++
T Consensus 275 l~ 276 (287)
T 2wei_A 275 LE 276 (287)
T ss_dssp HH
T ss_pred hc
Confidence 86
No 340
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=97.57 E-value=7.6e-06 Score=85.08 Aligned_cols=80 Identities=16% Similarity=0.240 Sum_probs=50.4
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCccccccccc--CCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLD--QRLPPPTGQLAEAVVLTINVALACTSTTP 747 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d--~~l~~~~~~~~~~~~~~~~ial~C~~~~p 747 (785)
+|+......+.++|||||||++.|++||+.|.+-.... .....+.. ..+.... .. .+.++...|.+.+|
T Consensus 210 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~~~~~~~~~~~~~~~~~---~~---~~~~li~~~l~~dp 280 (335)
T 2owb_A 210 PEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLK---ETYLRIKKNEYSIPKHI---NP---VAASLIQKMLQTDP 280 (335)
T ss_dssp HHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHH---HHHHHHHHTCCCCCTTS---CH---HHHHHHHHHTCSSG
T ss_pred HHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHH---HHHHHHhcCCCCCCccC---CH---HHHHHHHHHccCCh
Confidence 35555566788999999999999999999995411000 00000000 1111111 11 23456678999999
Q ss_pred CCCCChHHHHH
Q 003931 748 DTRPSMRFVAQ 758 (785)
Q Consensus 748 ~~Rp~m~~vv~ 758 (785)
++||++.|+++
T Consensus 281 ~~Rps~~ell~ 291 (335)
T 2owb_A 281 TARPTINELLN 291 (335)
T ss_dssp GGSCCGGGGGG
T ss_pred hHCcCHHHHhc
Confidence 99999999976
No 341
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=97.57 E-value=9.5e-06 Score=85.04 Aligned_cols=86 Identities=13% Similarity=0.092 Sum_probs=49.6
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+-.....+.++|||||||++.||+||+.|..-... ......+...............-..+.++.-.|...+|++
T Consensus 187 PE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~ 263 (361)
T 2yab_A 187 PEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK---QETLANITAVSYDFDEEFFSQTSELAKDFIRKLLVKETRK 263 (361)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH---HHHHHHHHTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTT
T ss_pred chHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHCCCChhH
Confidence 3444455678899999999999999999999520000 0000111111110000000000012345677899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.|+++
T Consensus 264 R~t~~e~l~ 272 (361)
T 2yab_A 264 RLTIQEALR 272 (361)
T ss_dssp SCCHHHHHT
T ss_pred CcCHHHHhc
Confidence 999999864
No 342
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=97.56 E-value=1.4e-05 Score=82.60 Aligned_cols=79 Identities=16% Similarity=0.251 Sum_probs=46.1
Q ss_pred hcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChH
Q 003931 675 TMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMR 754 (785)
Q Consensus 675 ~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~ 754 (785)
....+.++|||||||+++|++||+.|..-...............+..... .... .+.++...|.+.+|++||++.
T Consensus 208 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~l~~li~~~l~~dp~~Rps~~ 282 (326)
T 2x7f_A 208 DATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNPAPRLKSK--KWSK---KFQSFIESCLVKNHSQRPATE 282 (326)
T ss_dssp ---CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCS--CSCH---HHHHHHHHHCCSSGGGSCCHH
T ss_pred CcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCccccCCcc--ccCH---HHHHHHHHHhccChhhCCCHH
Confidence 45678899999999999999999999531100000000000001111110 1111 234566789999999999999
Q ss_pred HHHH
Q 003931 755 FVAQ 758 (785)
Q Consensus 755 ~vv~ 758 (785)
+|++
T Consensus 283 ~ll~ 286 (326)
T 2x7f_A 283 QLMK 286 (326)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 9976
No 343
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=97.56 E-value=8.5e-06 Score=84.24 Aligned_cols=91 Identities=11% Similarity=0.031 Sum_probs=52.1
Q ss_pred cccccccceeeeehhhhhhhhCCCCCc----------hhhhccC--ccccccccc---------CCCCCCCchh--HHHH
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG--ELFLKDVLD---------QRLPPPTGQL--AEAV 732 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~--~~~~~~~~d---------~~l~~~~~~~--~~~~ 732 (785)
...+.++|||||||++.|++||+.|.. +...... .....+..+ +......... ...-
T Consensus 176 ~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (324)
T 3mtl_A 176 TDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLD 255 (324)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSC
T ss_pred CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhhcccccccccchhhhhhcCCCC
Confidence 456889999999999999999999853 1111000 000111100 0000000000 0001
Q ss_pred HHHHHHHhhcCCCCCCCCCChHHHHH--HHHhcccc
Q 003931 733 VLTINVALACTSTTPDTRPSMRFVAQ--ELSAKTQA 766 (785)
Q Consensus 733 ~~~~~ial~C~~~~p~~Rp~m~~vv~--~l~~~~~~ 766 (785)
..+.++...|.+.+|++||++.||++ ++.++...
T Consensus 256 ~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~ 291 (324)
T 3mtl_A 256 SDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLGER 291 (324)
T ss_dssp HHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCST
T ss_pred HHHHHHHHHHcCcCcccCCCHHHHhcChhhhhcccc
Confidence 22456778899999999999999977 45555443
No 344
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=97.55 E-value=5.2e-06 Score=85.87 Aligned_cols=81 Identities=19% Similarity=0.166 Sum_probs=47.9
Q ss_pred hhhhhccc-ccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 671 ELAVTMRV-TDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 671 e~~~~~~~-t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
|+-.+... +.++||||+||++.||+||+.|.+-... ......+.......+.... . .+.++.-.|...+|++
T Consensus 183 E~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~---~~~~~~i~~~~~~~p~~~s-~---~~~~li~~~L~~dP~~ 255 (328)
T 3fe3_A 183 ELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNL---KELRERVLRGKYRIPFYMS-T---DCENLLKRFLVLNPIK 255 (328)
T ss_dssp HHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCTTSC-H---HHHHHHHHHCCSSTTT
T ss_pred ccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCH---HHHHHHHHhCCCCCCCCCC-H---HHHHHHHHHCCCChhH
Confidence 44444443 4789999999999999999999541100 0000011111111010011 1 2335667899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.|+++
T Consensus 256 R~t~~eil~ 264 (328)
T 3fe3_A 256 RGTLEQIMK 264 (328)
T ss_dssp SCCHHHHTT
T ss_pred CcCHHHHhc
Confidence 999999865
No 345
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=97.55 E-value=4.8e-05 Score=77.45 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=46.8
Q ss_pred cccccceeeeehhhhhhhhCCCCCc-------hhhhccCccccc----------ccccCCCCCCC-chhHH----HHHHH
Q 003931 678 VTDKCDVFSFGVVALEVMMGRHPGE-------LITSLSGELFLK----------DVLDQRLPPPT-GQLAE----AVVLT 735 (785)
Q Consensus 678 ~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~~~~~~~----------~~~d~~l~~~~-~~~~~----~~~~~ 735 (785)
.+.++|||||||++.|++||+.|.. +...+...+... ...++...... ..... .-..+
T Consensus 181 ~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (299)
T 2r3i_A 181 YSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDG 260 (299)
T ss_dssp CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHH
T ss_pred CChHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCchhhhhHhhcCcccchhhhcccchhhHhhCCCCCHHH
Confidence 6889999999999999999999953 111100000000 00111111000 00000 00234
Q ss_pred HHHHhhcCCCCCCCCCChHHHHH
Q 003931 736 INVALACTSTTPDTRPSMRFVAQ 758 (785)
Q Consensus 736 ~~ial~C~~~~p~~Rp~m~~vv~ 758 (785)
.++...|.+.+|++||++.|+++
T Consensus 261 ~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 261 RSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp HHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHhcCcCcccCCCHHHHhc
Confidence 46778899999999999999976
No 346
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=97.54 E-value=2e-05 Score=79.83 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=47.3
Q ss_pred ccccccceeeeehhhhhhhhCCCCCc----------hhhhccC---ccc--c--cccccCCCCCCC----ch-hHHHHHH
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG---ELF--L--KDVLDQRLPPPT----GQ-LAEAVVL 734 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~---~~~--~--~~~~d~~l~~~~----~~-~~~~~~~ 734 (785)
..+.++||||+||++.|++||+.|.. +.+.... ..+ . ....++...... .. ....-..
T Consensus 177 ~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (288)
T 1ob3_A 177 KYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESFLKGLDES 256 (288)
T ss_dssp SCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCGGGTCCSCCHH
T ss_pred CCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhcccccccccccccCccHHHHhhhcCHH
Confidence 46889999999999999999999853 1110000 000 0 011122111000 00 0000112
Q ss_pred HHHHHhhcCCCCCCCCCChHHHHH
Q 003931 735 TINVALACTSTTPDTRPSMRFVAQ 758 (785)
Q Consensus 735 ~~~ial~C~~~~p~~Rp~m~~vv~ 758 (785)
+.++...|.+.+|++||++.|+++
T Consensus 257 ~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 257 GIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp HHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHHHcCCCcccCCCHHHHhc
Confidence 346778899999999999999864
No 347
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=97.53 E-value=2.3e-05 Score=79.85 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=44.7
Q ss_pred cccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCC-CchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931 678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPP-TGQLAEAVVLTINVALACTSTTPDTRPSMRFV 756 (785)
Q Consensus 678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~-~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v 756 (785)
.+.++|||||||++.|++||+.|..-..... ....+.......+ .....+ .+.++...|.+.+|++||++.||
T Consensus 217 ~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~l~~li~~~l~~dp~~R~s~~e~ 290 (298)
T 2zv2_A 217 SGKALDVWAMGVTLYCFVFGQCPFMDERIMC---LHSKIKSQALEFPDQPDIAE---DLKDLITRMLDKNPESRIVVPEI 290 (298)
T ss_dssp ESHHHHHHHHHHHHHHHHHSSCSSCCSSHHH---HHHHHHHCCCCCCSSSCCCH---HHHHHHHHHTCSCTTTSCCHHHH
T ss_pred CCchhhhHhHHHHHHHHHHCCCCCCCccHHH---HHHHHhcccCCCCCccccCH---HHHHHHHHHhhcChhhCCCHHHH
Confidence 3678999999999999999999953100000 0000000000000 001111 24466788999999999999998
Q ss_pred HH
Q 003931 757 AQ 758 (785)
Q Consensus 757 v~ 758 (785)
++
T Consensus 291 l~ 292 (298)
T 2zv2_A 291 KL 292 (298)
T ss_dssp TT
T ss_pred hc
Confidence 53
No 348
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=97.53 E-value=8.2e-06 Score=83.21 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=47.1
Q ss_pred cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF 755 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~ 755 (785)
...+.++||||||+++.|++||+.|..-.... .....+...............-..+.++...|.+.+|++||++.|
T Consensus 204 ~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ 280 (298)
T 1phk_A 204 PGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQM---LMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEE 280 (298)
T ss_dssp CCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHH---HHHHHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHH
T ss_pred ccCCcccccHhHHHHHHHHHHCCCCCcCccHH---HHHHHHhcCCcccCcccccccCHHHHHHHHHHccCCcccCCCHHH
Confidence 34678999999999999999999995310000 000001110000000000001123456778899999999999999
Q ss_pred HHH
Q 003931 756 VAQ 758 (785)
Q Consensus 756 vv~ 758 (785)
+++
T Consensus 281 ll~ 283 (298)
T 1phk_A 281 ALA 283 (298)
T ss_dssp HTT
T ss_pred HHh
Confidence 864
No 349
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=97.51 E-value=3.2e-05 Score=81.19 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=27.6
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
+|+......+.++|||||||++.|++||+.|..
T Consensus 199 PE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~ 231 (360)
T 3eqc_A 199 PERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIP 231 (360)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSS
T ss_pred HHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence 355555667889999999999999999999953
No 350
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=97.51 E-value=3.1e-05 Score=80.12 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=25.9
Q ss_pred hhhhhc-ccccccceeeeehhhhhhhhCCCCCc
Q 003931 671 ELAVTM-RVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 671 e~~~~~-~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
|+-... ..+.++|||||||++.|++||+.|..
T Consensus 207 E~~~~~~~~~~~~DiwslG~il~ell~g~~pf~ 239 (329)
T 3gbz_A 207 EILLGSRHYSTSVDIWSIACIWAEMLMKTPLFP 239 (329)
T ss_dssp HHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred HHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcC
Confidence 444333 36899999999999999999999953
No 351
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=97.51 E-value=3.5e-05 Score=82.85 Aligned_cols=77 Identities=23% Similarity=0.266 Sum_probs=46.2
Q ss_pred cccccccceeeeehhhhhhhh-CCCCCch--hhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC
Q 003931 676 MRVTDKCDVFSFGVVALEVMM-GRHPGEL--ITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS 752 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLEllt-gk~p~~~--~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~ 752 (785)
...+.++|||||||++.|++| |+.|.+- ..... ................ .-..+.++...|.+.+|++||+
T Consensus 204 ~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~~~~~li~~~L~~dP~~Rps 277 (432)
T 3p23_A 204 ENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQAN---ILLGACSLDCLHPEKH---EDVIARELIEKMIAMDPQKRPS 277 (432)
T ss_dssp -CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHH---HHTTCCCCTTSCTTCH---HHHHHHHHHHHHSCSSGGGSCC
T ss_pred cCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHH---HHhccCCccccCcccc---ccHHHHHHHHHHHhCCHhhCCC
Confidence 455779999999999999999 8888531 00000 0000000000001111 1122446778999999999999
Q ss_pred hHHHHH
Q 003931 753 MRFVAQ 758 (785)
Q Consensus 753 m~~vv~ 758 (785)
+.||++
T Consensus 278 ~~evl~ 283 (432)
T 3p23_A 278 AKHVLK 283 (432)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999984
No 352
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=97.50 E-value=1e-05 Score=82.06 Aligned_cols=81 Identities=19% Similarity=0.271 Sum_probs=47.3
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|.-.....+.|+|||||||++.||+++-... . ..+ .....+.+.... ....+.......+...|.+.+|++
T Consensus 199 PE~~~~~~y~~~~DiwSlGvilyell~Pf~~~-~-~~~---~~~~~~~~~~~p---~~~~~~~~~~~~li~~~L~~dP~~ 270 (299)
T 4g31_A 199 PEQIHGNSYSHKVDIFSLGLILFELLYPFSTQ-M-ERV---RTLTDVRNLKFP---PLFTQKYPCEYVMVQDMLSPSPME 270 (299)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHSCCSSH-H-HHH---HHHHHHHTTCCC---HHHHHHCHHHHHHHHHHTCSSGGG
T ss_pred HHHHcCCCCCCHHHHHHHHHHHHHHccCCCCc-c-HHH---HHHHHHhcCCCC---CCCcccCHHHHHHHHHHcCCChhH
Confidence 45555667789999999999999999832111 0 000 001111111111 111111122345667899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.|+++
T Consensus 271 Rps~~eil~ 279 (299)
T 4g31_A 271 RPEAINIIE 279 (299)
T ss_dssp SCCHHHHHT
T ss_pred CcCHHHHhc
Confidence 999999865
No 353
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=97.49 E-value=1.8e-05 Score=84.10 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=24.2
Q ss_pred cccccccceeeeehhhhhhhhCCCCCc
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
...+.++|||||||++.||+||+.|..
T Consensus 212 ~~~~~~~DiwslG~il~el~~g~~pf~ 238 (389)
T 3gni_B 212 QGYDAKSDIYSVGITACELANGHVPFK 238 (389)
T ss_dssp SCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred CCCCcHhHHHHHHHHHHHHHHCCCCCC
Confidence 457889999999999999999999953
No 354
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=97.48 E-value=1.6e-05 Score=82.42 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=23.8
Q ss_pred cccccccceeeeehhhhhhhhCCCCC
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPG 701 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~ 701 (785)
...+.++|||||||++.|++||+.|.
T Consensus 206 ~~~~~~~DiwslG~il~~ll~g~~p~ 231 (330)
T 3nsz_A 206 QMYDYSLDMWSLGCMLASMIFRKEPF 231 (330)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred CcCCchhhHHHHHHHHHHHHhCCCCc
Confidence 45788999999999999999999995
No 355
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=97.48 E-value=5e-05 Score=80.09 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=27.6
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
+|+......+.++|||||||++.|++||+.|..
T Consensus 195 PE~~~~~~~~~~~DiwslG~il~el~~g~~pf~ 227 (371)
T 2xrw_A 195 PEVILGMGYKENVDIWSVGCIMGEMIKGGVLFP 227 (371)
T ss_dssp HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred HHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence 455555667899999999999999999999853
No 356
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=97.47 E-value=4.3e-06 Score=84.57 Aligned_cols=80 Identities=11% Similarity=0.176 Sum_probs=48.4
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|.-.....+.++||||+||++.||+||+.|.+--.. ......+......-+. ....+ +.++.-.|...+|++
T Consensus 203 PEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~---~~~~~~i~~~~~~~p~-~~s~~---~~dli~~lL~~dp~~ 275 (311)
T 4aw0_A 203 PELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNE---GLIFAKIIKLEYDFPE-KFFPK---ARDLVEKLLVLDATK 275 (311)
T ss_dssp HHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHTCCCCCT-TCCHH---HHHHHHHHSCSSGGG
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHcCCCCCCc-ccCHH---HHHHHHHHccCCHhH
Confidence 3555556678899999999999999999999530000 0000111111111011 11112 234567899999999
Q ss_pred CCChHHH
Q 003931 750 RPSMRFV 756 (785)
Q Consensus 750 Rp~m~~v 756 (785)
||+..|+
T Consensus 276 R~t~~e~ 282 (311)
T 4aw0_A 276 RLGCEEM 282 (311)
T ss_dssp STTSGGG
T ss_pred CcChHHH
Confidence 9999886
No 357
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=97.44 E-value=3.7e-05 Score=79.14 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=23.4
Q ss_pred ccccccceeeeehhhhhhhhCCCCCc
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
..+.++|||||||++.||+||+.|..
T Consensus 185 ~~~~~~DiwslG~il~el~~g~~pf~ 210 (317)
T 2pmi_A 185 TYSTSIDIWSCGCILAEMITGKPLFP 210 (317)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence 46889999999999999999999853
No 358
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=97.44 E-value=5.4e-05 Score=79.16 Aligned_cols=82 Identities=7% Similarity=0.064 Sum_probs=47.9
Q ss_pred ccccccceeeeehhhhhhhhCCCCCc----------hhhhccC--cccccc-----cccC-CCC-CCCchhHHHH-----
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSG--ELFLKD-----VLDQ-RLP-PPTGQLAEAV----- 732 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~--~~~~~~-----~~d~-~l~-~~~~~~~~~~----- 732 (785)
..+.++|||||||++.|++||+.|.+ +...... ...... ..+. ... .......+.+
T Consensus 205 ~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (351)
T 3mi9_A 205 DYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVR 284 (351)
T ss_dssp SCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHC
T ss_pred CCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhhccccccchhhcccccccccccCHHHHhhhccC
Confidence 46889999999999999999999854 0000000 000000 0000 000 0000111111
Q ss_pred -HHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931 733 -VLTINVALACTSTTPDTRPSMRFVAQ 758 (785)
Q Consensus 733 -~~~~~ial~C~~~~p~~Rp~m~~vv~ 758 (785)
..+.++...|.+.+|++||++.||++
T Consensus 285 ~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 285 DPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp CHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred ChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 12557788999999999999999865
No 359
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=97.43 E-value=1.6e-05 Score=83.54 Aligned_cols=85 Identities=19% Similarity=0.219 Sum_probs=47.9
Q ss_pred hhhhhcccccc-cceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCC-chhHHHHHHHHHHHhhcCCCCC
Q 003931 671 ELAVTMRVTDK-CDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPT-GQLAEAVVLTINVALACTSTTP 747 (785)
Q Consensus 671 e~~~~~~~t~k-~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~-~~~~~~~~~~~~ial~C~~~~p 747 (785)
|+-.....+.+ +||||+||++.|++||+.|..-...... ......+.......+. ..... .+.++.-.|.+.+|
T Consensus 187 E~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---~~~~li~~~L~~dP 263 (361)
T 3uc3_A 187 EVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIRISP---ECCHLISRIFVADP 263 (361)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCTTSCCCH---HHHHHHHHHSCSCT
T ss_pred hhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCCcCCCCH---HHHHHHHHHccCCh
Confidence 44333444444 8999999999999999999531100000 0001111111111100 00011 23466788999999
Q ss_pred CCCCChHHHHH
Q 003931 748 DTRPSMRFVAQ 758 (785)
Q Consensus 748 ~~Rp~m~~vv~ 758 (785)
++||++.|+++
T Consensus 264 ~~Rps~~ell~ 274 (361)
T 3uc3_A 264 ATRISIPEIKT 274 (361)
T ss_dssp TTSCCHHHHHT
T ss_pred hHCcCHHHHHh
Confidence 99999999976
No 360
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=97.43 E-value=1.7e-05 Score=83.62 Aligned_cols=32 Identities=22% Similarity=0.468 Sum_probs=26.4
Q ss_pred hhhhh-cccccccceeeeehhhhhhhhCCCCCc
Q 003931 671 ELAVT-MRVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 671 e~~~~-~~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
|+... ...+.++|||||||++.|++||+.|.+
T Consensus 211 E~~~~~~~~~~~~DiwslG~il~el~~g~~pf~ 243 (371)
T 4exu_A 211 EVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFK 243 (371)
T ss_dssp HHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCC
T ss_pred HHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCC
Confidence 44333 567889999999999999999999964
No 361
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=97.42 E-value=1.5e-05 Score=83.39 Aligned_cols=82 Identities=12% Similarity=0.074 Sum_probs=46.2
Q ss_pred cccc-ccceeeeehhhhhhhhCCCCCc-------hhhhccCcc-cc----cccccCCCCCCCc-hhHHHHHHHHHHHhhc
Q 003931 677 RVTD-KCDVFSFGVVALEVMMGRHPGE-------LITSLSGEL-FL----KDVLDQRLPPPTG-QLAEAVVLTINVALAC 742 (785)
Q Consensus 677 ~~t~-k~DVYSfGvvlLElltgk~p~~-------~~~~~~~~~-~~----~~~~d~~l~~~~~-~~~~~~~~~~~ial~C 742 (785)
..+. ++||||||+++.|++||+.|.+ +...+.... .. .....+....... .....-..+.++...|
T Consensus 227 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~ 306 (348)
T 2pml_X 227 SYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLF 306 (348)
T ss_dssp CEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHHHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHH
Confidence 3444 9999999999999999999954 111111100 00 0000000000000 0000012345677789
Q ss_pred CCCCCCCCCChHHHHH
Q 003931 743 TSTTPDTRPSMRFVAQ 758 (785)
Q Consensus 743 ~~~~p~~Rp~m~~vv~ 758 (785)
.+.+|++||++.||++
T Consensus 307 L~~dP~~Rps~~e~l~ 322 (348)
T 2pml_X 307 LRKNPAERITSEDALK 322 (348)
T ss_dssp CCSSGGGSCCHHHHHT
T ss_pred ccCChhhCCCHHHHhc
Confidence 9999999999999865
No 362
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=97.35 E-value=8e-05 Score=80.91 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=28.0
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
+|+-.....+.++||||+||++.||+||+.|..
T Consensus 232 PE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~ 264 (464)
T 3ttj_A 232 PEVILGMGYKENVDIWSVGCIMGEMVRHKILFP 264 (464)
T ss_dssp HHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCC
Confidence 455556678899999999999999999999853
No 363
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=97.35 E-value=3e-05 Score=79.84 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=48.1
Q ss_pred cccccccceeeeehhhhhhhhCCCCCchh----------hhccC--cccccccc-------cCCCCCCCchhH----HHH
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGELI----------TSLSG--ELFLKDVL-------DQRLPPPTGQLA----EAV 732 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~----------~~~~~--~~~~~~~~-------d~~l~~~~~~~~----~~~ 732 (785)
...+.++|||||||++.|++||+.|..-. ..... .....++. ............ ..-
T Consensus 200 ~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (320)
T 2i6l_A 200 NNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGIS 279 (320)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHSCCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCC
T ss_pred ccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCchhhhhhhhhcCcccccccccCCCCChhHhcchhh
Confidence 45788999999999999999999995410 00000 00000000 000000000000 001
Q ss_pred HHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931 733 VLTINVALACTSTTPDTRPSMRFVAQ 758 (785)
Q Consensus 733 ~~~~~ial~C~~~~p~~Rp~m~~vv~ 758 (785)
..+.++...|.+.+|++||++.|+++
T Consensus 280 ~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 280 REAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp HHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHHHcCCCccccCCHHHHhC
Confidence 23456788999999999999999976
No 364
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=97.35 E-value=5.9e-05 Score=79.22 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=48.6
Q ss_pred cccccccceeeeehhhhhhhhCCCCCc----------hhhhccCcc----------cccccccCCCCCCC-chhH----H
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGE----------LITSLSGEL----------FLKDVLDQRLPPPT-GQLA----E 730 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~----------~~~~~~~~~----------~~~~~~d~~l~~~~-~~~~----~ 730 (785)
...+.++|||||||++.|++||+.|.. ++....... ...+.+...+.... .... .
T Consensus 209 ~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (362)
T 3pg1_A 209 KGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPT 288 (362)
T ss_dssp TTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTT
T ss_pred CCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCC
Confidence 457889999999999999999999954 111110000 00001111110000 0000 0
Q ss_pred HHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931 731 AVVLTINVALACTSTTPDTRPSMRFVAQ 758 (785)
Q Consensus 731 ~~~~~~~ial~C~~~~p~~Rp~m~~vv~ 758 (785)
.-..+.++...|.+.+|++||++.|+++
T Consensus 289 ~~~~~~~li~~~L~~dP~~Rpt~~ell~ 316 (362)
T 3pg1_A 289 ADPVALDLIAKMLEFNPQRRISTEQALR 316 (362)
T ss_dssp SCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCHHHHHHHHHHhcCChhhCCCHHHHHc
Confidence 0123457788999999999999999976
No 365
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=97.34 E-value=3.7e-05 Score=86.06 Aligned_cols=85 Identities=20% Similarity=0.095 Sum_probs=46.4
Q ss_pred hhhhhcccccccceeeeehhhhhhhhCCCCCc----hhhhccC---ccc----ccccccC------CCCCCCchhHHHHH
Q 003931 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE----LITSLSG---ELF----LKDVLDQ------RLPPPTGQLAEAVV 733 (785)
Q Consensus 671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~----~~~~~~~---~~~----~~~~~d~------~l~~~~~~~~~~~~ 733 (785)
|+......+.++|||||||++.|++||+.|.. ...|... ... ..+..+. .+..+.......-.
T Consensus 193 E~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~l~g~~~~~~~lp~p~~l~~~ls~ 272 (676)
T 3qa8_A 193 ELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAVKFSSVLPTPNHLSGILAG 272 (676)
T ss_dssp CSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSCCCCSSSCCCCSSSCCSCCCCGGGHH
T ss_pred HHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhhhhhccccccccccCCchhhchhhhH
Confidence 33334567889999999999999999999963 2223211 110 0111111 11111000011122
Q ss_pred HHHHHHhhcCCCCCCCCCChHH
Q 003931 734 LTINVALACTSTTPDTRPSMRF 755 (785)
Q Consensus 734 ~~~~ial~C~~~~p~~Rp~m~~ 755 (785)
.+.++...|.+.+|++||++.|
T Consensus 273 ~L~dLI~~mL~~DP~kRPTa~e 294 (676)
T 3qa8_A 273 KLERWLQCMLMWHQRQRGTDPQ 294 (676)
T ss_dssp HHHHHHHHHSCSSCC---CCTT
T ss_pred HHHHHHHHHccCCHhhCcCHHH
Confidence 3456778899999999999977
No 366
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=97.34 E-value=2.1e-05 Score=85.40 Aligned_cols=78 Identities=17% Similarity=0.239 Sum_probs=48.1
Q ss_pred cccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHHH
Q 003931 678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFVA 757 (785)
Q Consensus 678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~vv 757 (785)
.+.++||||+||++.|++||+.|.+-... ......+.+.....+. .... .+.++.-.|.+.+|++||++.||+
T Consensus 193 ~~~~~DiwSlGvil~elltG~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~s~---~~~~Li~~~L~~dP~~Rpt~~eil 265 (476)
T 2y94_A 193 AGPEVDIWSSGVILYALLCGTLPFDDDHV---PTLFKKICDGIFYTPQ-YLNP---SVISLLKHMLQVDPMKRATIKDIR 265 (476)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSCSSCCSSS---HHHHHHHHTTCCCCCT-TCCH---HHHHHHHHHTCSSTTTSCCHHHHH
T ss_pred CCCcceehhhHHHHHHHhhCCCCCCCCCH---HHHHHHHhcCCcCCCc-cCCH---HHHHHHHHHcCCCchhCcCHHHHH
Confidence 36789999999999999999999641000 0001111111111111 0111 234567789999999999999998
Q ss_pred H--HHHh
Q 003931 758 Q--ELSA 762 (785)
Q Consensus 758 ~--~l~~ 762 (785)
+ ++.+
T Consensus 266 ~hp~~~~ 272 (476)
T 2y94_A 266 EHEWFKQ 272 (476)
T ss_dssp TCHHHHT
T ss_pred hCHHhhh
Confidence 6 4544
No 367
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=97.32 E-value=1.3e-05 Score=83.92 Aligned_cols=78 Identities=17% Similarity=0.268 Sum_probs=45.2
Q ss_pred ccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCC----
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRP---- 751 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp---- 751 (785)
..+.++|||||||+++|++||+.|......... ......+.......+. ... ..+.++...|.+.+|++||
T Consensus 238 ~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~li~~~L~~dP~~R~~~~~ 313 (355)
T 1vzo_A 238 GHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPYPQ-EMS---ALAKDLIQRLLMKDPKKRLGCGP 313 (355)
T ss_dssp --CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCCCCCCT-TSC---HHHHHHHHHHTCSSGGGSTTSST
T ss_pred CCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccCCCCCc-ccC---HHHHHHHHHHhhhCHHHhcCCCC
Confidence 467899999999999999999999531100000 0000011111110000 111 1234667889999999999
Q ss_pred -ChHHHHH
Q 003931 752 -SMRFVAQ 758 (785)
Q Consensus 752 -~m~~vv~ 758 (785)
++.|+.+
T Consensus 314 ~s~~ell~ 321 (355)
T 1vzo_A 314 RDADEIKE 321 (355)
T ss_dssp TTHHHHHT
T ss_pred CCHHHHHc
Confidence 8888865
No 368
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=97.32 E-value=4.7e-05 Score=79.67 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=24.2
Q ss_pred cccccccceeeeehhhhhhhhCCCCCc
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
...+.++|||||||++.|++||+.|.+
T Consensus 199 ~~~~~~~Di~slG~il~el~~g~~pf~ 225 (353)
T 3coi_A 199 MHYNQTVDIWSVGCIMAEMLTGKTLFK 225 (353)
T ss_dssp SCCCTTHHHHHHHHHHHHHHHSSCSSB
T ss_pred CCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence 457889999999999999999999954
No 369
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=97.31 E-value=5.4e-05 Score=81.23 Aligned_cols=89 Identities=17% Similarity=0.105 Sum_probs=51.5
Q ss_pred hhhhhh-cccccccceeeeehhhhhhhhCCCCCc-------hhhhccC---c---------ccccccccCCCCCCCchh-
Q 003931 670 TELAVT-MRVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLSG---E---------LFLKDVLDQRLPPPTGQL- 728 (785)
Q Consensus 670 ~e~~~~-~~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~~---~---------~~~~~~~d~~l~~~~~~~- 728 (785)
+|+... ...+.++|||||||++.||+||+.|.. +.+.+.. . ....+.--+.+.......
T Consensus 225 PE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 304 (420)
T 1j1b_A 225 PELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKV 304 (420)
T ss_dssp HHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHHHHCSCCCCCCCCCCCCCCHHHH
T ss_pred HHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccCccCCCCHHHh
Confidence 354433 357889999999999999999999853 1111110 0 000111111111100000
Q ss_pred --HHHHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931 729 --AEAVVLTINVALACTSTTPDTRPSMRFVAQ 758 (785)
Q Consensus 729 --~~~~~~~~~ial~C~~~~p~~Rp~m~~vv~ 758 (785)
...-..+.++.-.|.+.+|++||++.|+++
T Consensus 305 ~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 305 FRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp SCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred cCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 000123557778899999999999999975
No 370
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=97.30 E-value=0.0001 Score=77.39 Aligned_cols=26 Identities=23% Similarity=0.299 Sum_probs=23.4
Q ss_pred ccccccceeeeehhhhhhhhCCCCCc
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
..+.++||||+||++.|++||+.|..
T Consensus 208 ~~~~~~DiwslG~il~ell~g~~pf~ 233 (364)
T 3qyz_A 208 GYTKSIDIWSVGCILAEMLSNRPIFP 233 (364)
T ss_dssp SCSTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCCcchhHHHHHHHHHHHHHCCCCCC
Confidence 36889999999999999999999853
No 371
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=97.30 E-value=3.4e-05 Score=84.81 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=46.9
Q ss_pred cccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
...+.++||||+||++.|++||+.|.. +...+..... ....+... ... ..+.++...|.+.+|++
T Consensus 212 ~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~--~~~~~~~~----~~s---~~~~~li~~~L~~dp~~ 282 (494)
T 3lij_A 212 KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKY--TFDSPEWK----NVS---EGAKDLIKQMLQFDSQR 282 (494)
T ss_dssp TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCC--CCCSGGGT----TSC---HHHHHHHHHHTCSSTTT
T ss_pred ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC--CCCchhcc----cCC---HHHHHHHHHHCCCChhh
Confidence 457889999999999999999999953 1111111000 00000000 001 12345677899999999
Q ss_pred CCChHHHHH
Q 003931 750 RPSMRFVAQ 758 (785)
Q Consensus 750 Rp~m~~vv~ 758 (785)
||++.||++
T Consensus 283 R~s~~e~l~ 291 (494)
T 3lij_A 283 RISAQQALE 291 (494)
T ss_dssp SCCHHHHHT
T ss_pred CccHHHHhc
Confidence 999999975
No 372
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=97.29 E-value=2.2e-05 Score=85.12 Aligned_cols=82 Identities=21% Similarity=0.229 Sum_probs=50.4
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+-.....+.++|||||||++.||+||+.|..-... ......+......-+. .... .+.++.-.|.+.+|++
T Consensus 318 PE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~~~---~~~~li~~~L~~dP~~ 390 (446)
T 4ejn_A 318 PEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH---EKLFELILMEEIRFPR-TLGP---EAKSLLSGLLKKDPKQ 390 (446)
T ss_dssp HHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCT-TSCH---HHHHHHHHHTCSSTTT
T ss_pred HhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH---HHHHHHHHhCCCCCCc-cCCH---HHHHHHHHHcccCHHH
Confidence 4555566788999999999999999999999531000 0000011111111010 0111 2345667899999999
Q ss_pred CC-----ChHHHHH
Q 003931 750 RP-----SMRFVAQ 758 (785)
Q Consensus 750 Rp-----~m~~vv~ 758 (785)
|| ++.|+++
T Consensus 391 R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 391 RLGGGSEDAKEIMQ 404 (446)
T ss_dssp STTCSTTTHHHHHT
T ss_pred hCCCCCCCHHHHHh
Confidence 99 8988865
No 373
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=97.28 E-value=4e-05 Score=84.14 Aligned_cols=84 Identities=18% Similarity=0.112 Sum_probs=48.6
Q ss_pred ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHHH
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRFV 756 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~v 756 (785)
..+.++||||+||++.|++||+.|..-... ......+...............-..+.++...|.+.+|++||++.|+
T Consensus 198 ~~~~~~DiwslG~il~~ll~g~~pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~ 274 (486)
T 3mwu_A 198 TYDEKCDVWSAGVILYILLSGTPPFYGKNE---YDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQC 274 (486)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHTCCCSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHH
T ss_pred CCCchhhHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHhCCCCCCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHH
Confidence 467899999999999999999999530000 00000000000000000000001123466778999999999999999
Q ss_pred HH--HHHhc
Q 003931 757 AQ--ELSAK 763 (785)
Q Consensus 757 v~--~l~~~ 763 (785)
++ ++.+.
T Consensus 275 l~hp~~~~~ 283 (486)
T 3mwu_A 275 LEHPWIQKY 283 (486)
T ss_dssp HHCHHHHHT
T ss_pred hcCHhhccC
Confidence 86 35443
No 374
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=97.28 E-value=2.8e-05 Score=79.29 Aligned_cols=74 Identities=15% Similarity=0.290 Sum_probs=45.3
Q ss_pred cccccccceeeeehhhhhhhhCCCCCc----hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCC
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGE----LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRP 751 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~----~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp 751 (785)
...+.++|||||||+++|++|+..+.. +...+... ...+.+.... .....+.++...|.+.+|++||
T Consensus 206 ~~~~~~~Di~slG~il~~l~~p~~~~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~~~~li~~~l~~dp~~Rp 276 (303)
T 1zy4_A 206 GHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRSV---SIEFPPDFDD------NKMKVEKKIIRLLIDHDPNKRP 276 (303)
T ss_dssp SCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHST---TCCCCTTCCT------TTSHHHHHHHHHHTCSSGGGSC
T ss_pred CCCcchhhHHHHHHHHHHHHhccCCchhHHHHHHhcccc---ccccCccccc------cchHHHHHHHHHHHhcCcccCc
Confidence 357889999999999999999554321 11111110 0001111111 1112244677889999999999
Q ss_pred ChHHHHH
Q 003931 752 SMRFVAQ 758 (785)
Q Consensus 752 ~m~~vv~ 758 (785)
++.||++
T Consensus 277 s~~~ll~ 283 (303)
T 1zy4_A 277 GARTLLN 283 (303)
T ss_dssp CHHHHHH
T ss_pred CHHHHhC
Confidence 9999964
No 375
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=97.28 E-value=3.1e-05 Score=85.02 Aligned_cols=78 Identities=21% Similarity=0.283 Sum_probs=49.2
Q ss_pred ccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR 750 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R 750 (785)
..+.++||||+||++.|++||+.|.. +...+.... ....... .....+ .+.++.-.|.+.+|++|
T Consensus 203 ~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~-----~~~~~~~-~~~~s~---~~~~li~~~L~~dp~~R 273 (484)
T 3nyv_A 203 TYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGK-----YTFELPQ-WKKVSE---SAKDLIRKMLTYVPSMR 273 (484)
T ss_dssp CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC-----CCCCSGG-GGGSCH---HHHHHHHHHTCSSGGGS
T ss_pred CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCC-----CCCCCcc-cccCCH---HHHHHHHHHCCCChhHC
Confidence 57889999999999999999999953 111111100 0000000 001111 23456778999999999
Q ss_pred CChHHHHH--HHHhc
Q 003931 751 PSMRFVAQ--ELSAK 763 (785)
Q Consensus 751 p~m~~vv~--~l~~~ 763 (785)
|++.|+++ ++...
T Consensus 274 ~s~~e~l~h~~~~~~ 288 (484)
T 3nyv_A 274 ISARDALDHEWIQTY 288 (484)
T ss_dssp CCHHHHHTSHHHHHH
T ss_pred cCHHHHhhChhhccc
Confidence 99999976 45443
No 376
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=97.25 E-value=3.3e-05 Score=85.20 Aligned_cols=85 Identities=14% Similarity=0.099 Sum_probs=49.6
Q ss_pred cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCChHH
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPSMRF 755 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~m~~ 755 (785)
...+.++||||+||++.|++||+.|..-... ......+...............-..+.++.-.|.+.+|++||++.|
T Consensus 222 ~~~~~~~DiwslG~il~~ll~g~~pf~~~~~---~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e 298 (504)
T 3q5i_A 222 KKYNEKCDVWSCGVIMYILLCGYPPFGGQND---QDIIKKVEKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEE 298 (504)
T ss_dssp TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred cCCCchHHHHHHHHHHHHHHhCCCCCCCCCH---HHHHHHHHcCCCCCCccccCCCCHHHHHHHHHHcCCChhHCCCHHH
Confidence 4578899999999999999999999531000 0000011111110000000000112446677899999999999999
Q ss_pred HHH--HHHhc
Q 003931 756 VAQ--ELSAK 763 (785)
Q Consensus 756 vv~--~l~~~ 763 (785)
|++ ++.+.
T Consensus 299 ~l~h~~~~~~ 308 (504)
T 3q5i_A 299 ALNSRWIKKY 308 (504)
T ss_dssp HHTSHHHHHT
T ss_pred HhcCHhhhhc
Confidence 975 45443
No 377
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=97.24 E-value=8.9e-05 Score=78.77 Aligned_cols=82 Identities=20% Similarity=0.194 Sum_probs=48.0
Q ss_pred ccccccceeeeehhhhhhhhCCCCCc-------h---hhhccCc--cc----ccccccCCCCCCCc-hhHH-----HHHH
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGE-------L---ITSLSGE--LF----LKDVLDQRLPPPTG-QLAE-----AVVL 734 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~-------~---~~~~~~~--~~----~~~~~d~~l~~~~~-~~~~-----~~~~ 734 (785)
..+.++|||||||++.||+||+.|.. + ++..... .. .....+........ .... .-..
T Consensus 218 ~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (394)
T 4e7w_A 218 NYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPD 297 (394)
T ss_dssp SCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHH
T ss_pred CCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHH
Confidence 47889999999999999999999953 1 1111000 00 00011111100000 0000 0123
Q ss_pred HHHHHhhcCCCCCCCCCChHHHHH
Q 003931 735 TINVALACTSTTPDTRPSMRFVAQ 758 (785)
Q Consensus 735 ~~~ial~C~~~~p~~Rp~m~~vv~ 758 (785)
+.++...|.+.+|++||++.|+++
T Consensus 298 ~~~li~~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 298 AIDLISRLLEYTPSARLTAIEALC 321 (394)
T ss_dssp HHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHhCCChhhCCCHHHHhc
Confidence 556778999999999999999976
No 378
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=97.24 E-value=0.0001 Score=76.83 Aligned_cols=83 Identities=12% Similarity=0.053 Sum_probs=47.2
Q ss_pred ccccccceeeeehhhhhhhhCCCCCc-------hhhhcc---C---cccc-----cccccCC-CCCCCchh--HHHHHHH
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLS---G---ELFL-----KDVLDQR-LPPPTGQL--AEAVVLT 735 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~---~---~~~~-----~~~~d~~-l~~~~~~~--~~~~~~~ 735 (785)
..+.++|||||||++.|++||+.|.. +...+. . +.+. .+.+... ........ ...-..+
T Consensus 189 ~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (346)
T 1ua2_A 189 MYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDL 268 (346)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHH
T ss_pred CCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHH
Confidence 36789999999999999999998843 110000 0 0000 0000000 00000000 0001235
Q ss_pred HHHHhhcCCCCCCCCCChHHHHHH
Q 003931 736 INVALACTSTTPDTRPSMRFVAQE 759 (785)
Q Consensus 736 ~~ial~C~~~~p~~Rp~m~~vv~~ 759 (785)
.++.-.|.+.+|++||++.||++.
T Consensus 269 ~~li~~~L~~dP~~Rpt~~ell~h 292 (346)
T 1ua2_A 269 LDLIQGLFLFNPCARITATQALKM 292 (346)
T ss_dssp HHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred HHHHHHHhccChhhCCCHHHHhcC
Confidence 567788999999999999999763
No 379
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=97.24 E-value=6.8e-05 Score=79.46 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=50.3
Q ss_pred hhhhhh-cccccccceeeeehhhhhhhhCCCCCc-------hhhhcc---Cc---------ccccccccCCCCCCCchhH
Q 003931 670 TELAVT-MRVTDKCDVFSFGVVALEVMMGRHPGE-------LITSLS---GE---------LFLKDVLDQRLPPPTGQLA 729 (785)
Q Consensus 670 ~e~~~~-~~~t~k~DVYSfGvvlLElltgk~p~~-------~~~~~~---~~---------~~~~~~~d~~l~~~~~~~~ 729 (785)
+|+... ...+.++||||+||++.|++||+.|.. +...+. .. ....++.-+..... ...
T Consensus 210 PE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~--~~~ 287 (383)
T 3eb0_A 210 PELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAK--DWR 287 (383)
T ss_dssp HHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCC--CHH
T ss_pred HHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcc--cHH
Confidence 344333 347889999999999999999999953 111110 00 00001111111100 000
Q ss_pred H-----HHHHHHHHHhhcCCCCCCCCCChHHHHH
Q 003931 730 E-----AVVLTINVALACTSTTPDTRPSMRFVAQ 758 (785)
Q Consensus 730 ~-----~~~~~~~ial~C~~~~p~~Rp~m~~vv~ 758 (785)
. .-..+.++...|.+.+|++||++.|+++
T Consensus 288 ~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (383)
T 3eb0_A 288 KILPEGTPSLAIDLLEQILRYEPDLRINPYEAMA 321 (383)
T ss_dssp HHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred hhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 0 0112457778999999999999999975
No 380
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=97.23 E-value=3.4e-05 Score=79.97 Aligned_cols=81 Identities=21% Similarity=0.246 Sum_probs=47.8
Q ss_pred hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR 750 (785)
Q Consensus 671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R 750 (785)
|+-.....+.++||||+||++.||+||+.|..-... ......+....+.-+. ....+ +..+.-.|.+.+|++|
T Consensus 175 E~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~s~~---~~~li~~lL~~dP~~R 247 (337)
T 1o6l_A 175 EVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH---ERLFELILMEEIRFPR-TLSPE---AKSLLAGLLKKDPKQR 247 (337)
T ss_dssp GGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCT-TSCHH---HHHHHHHHTCSSTTTS
T ss_pred hhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCH---HHHHHHHHcCCCCCCC-CCCHH---HHHHHHHHhhcCHHHh
Confidence 444445678899999999999999999999530000 0000011111111110 11112 3345667999999999
Q ss_pred C-----ChHHHHH
Q 003931 751 P-----SMRFVAQ 758 (785)
Q Consensus 751 p-----~m~~vv~ 758 (785)
| ++.||.+
T Consensus 248 ~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 248 LGGGPSDAKEVME 260 (337)
T ss_dssp TTCSTTTHHHHHT
T ss_pred cCCCCCCHHHHHc
Confidence 9 7888754
No 381
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=97.22 E-value=2.6e-05 Score=81.69 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=24.2
Q ss_pred cccccccceeeeehhhhhhhhCCCCCc
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
...+.++|||||||++.|++||+.|..
T Consensus 198 ~~~~~~~Di~slG~il~~l~~g~~pf~ 224 (353)
T 2b9h_A 198 AKYSRAMDVWSCGCILAELFLRRPIFP 224 (353)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CCccchhhHHHHHHHHHHHHhCCCCCC
Confidence 567889999999999999999999953
No 382
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=97.21 E-value=0.0001 Score=77.35 Aligned_cols=31 Identities=26% Similarity=0.494 Sum_probs=25.8
Q ss_pred hhhhh-cccccccceeeeehhhhhhhhCCCCC
Q 003931 671 ELAVT-MRVTDKCDVFSFGVVALEVMMGRHPG 701 (785)
Q Consensus 671 e~~~~-~~~t~k~DVYSfGvvlLElltgk~p~ 701 (785)
|+-.. ...+.++||||+||++.||+||+.|.
T Consensus 199 E~~~~~~~~~~~~DiwslG~il~ell~g~~pf 230 (367)
T 2fst_X 199 EIMLNWMHYNQTVDIWSVGCIMAELLTGRTLF 230 (367)
T ss_dssp HHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSC
T ss_pred HHHcCCcCCCchhhHHHHHHHHHHHHhCCCCC
Confidence 44333 46788999999999999999999985
No 383
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=97.18 E-value=0.00018 Score=75.64 Aligned_cols=87 Identities=11% Similarity=-0.012 Sum_probs=53.4
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+-.....+.++|||||||++.||+||+.|.. ..... ...++...... ...+....+ .-.|.+.+|.+
T Consensus 254 PE~~~~~~~~~~~DiwslG~il~elltg~~pf~-----~~~~~-~~~~~~~~~~~--~~~~~~~~~---~~~~l~~~p~~ 322 (365)
T 3e7e_A 254 VEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKV-----KNEGG-ECKPEGLFRRL--PHLDMWNEF---FHVMLNIPDCH 322 (365)
T ss_dssp HHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCE-----EEETT-EEEECSCCTTC--SSHHHHHHH---HHHHHCCCCTT
T ss_pred hHHhcCCCCCccccHHHHHHHHHHHHhCCCccc-----cCCCC-ceeechhcccc--CcHHHHHHH---HHHHcCCCCCC
Confidence 466666678999999999999999999999942 11000 00111111111 112233333 33456677877
Q ss_pred C-CChHHHHHHHHhccccc
Q 003931 750 R-PSMRFVAQELSAKTQAY 767 (785)
Q Consensus 750 R-p~m~~vv~~l~~~~~~~ 767 (785)
| |+++++.+.|+++-...
T Consensus 323 r~~~~~~l~~~l~~~l~~~ 341 (365)
T 3e7e_A 323 HLPSLDLLRQKLKKVFQQH 341 (365)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHh
Confidence 7 68888888888775553
No 384
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=97.17 E-value=0.00011 Score=78.44 Aligned_cols=31 Identities=19% Similarity=0.277 Sum_probs=25.4
Q ss_pred hhhhh-cccccccceeeeehhhhhhhhCCCCC
Q 003931 671 ELAVT-MRVTDKCDVFSFGVVALEVMMGRHPG 701 (785)
Q Consensus 671 e~~~~-~~~t~k~DVYSfGvvlLElltgk~p~ 701 (785)
|+-.. ...+.++|||||||++.||+||+.|.
T Consensus 205 E~~~~~~~~~~~~DiwSlG~il~ell~g~~pf 236 (405)
T 3rgf_A 205 ELLLGARHYTKAIDIWAIGCIFAELLTSEPIF 236 (405)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTT
T ss_pred hhhcCCCcccchhhhHHHHHHHHHHHhCCCCC
Confidence 44333 34788999999999999999999985
No 385
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=97.16 E-value=0.00016 Score=76.02 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=24.3
Q ss_pred cccccccceeeeehhhhhhhhCCCCCc
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPGE 702 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~~ 702 (785)
...+.++||||+||++.||+||+.|..
T Consensus 201 ~~~~~~~DiwslG~il~ell~g~~pf~ 227 (367)
T 1cm8_A 201 MRYTQTVDIWSVGCIMAEMITGKTLFK 227 (367)
T ss_dssp TCCCTTHHHHHHHHHHHHHHHSSCSSC
T ss_pred CCCChhhhHHHHHHHHHHHHhCCCCCC
Confidence 567899999999999999999999953
No 386
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=97.13 E-value=4.1e-05 Score=79.88 Aligned_cols=82 Identities=11% Similarity=0.139 Sum_probs=49.2
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+-.....+.++|||||||++.||+||+.|..-... ......+....+.-+. .... .+..+.-.|.+.+|++
T Consensus 207 PE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~~~---~~~~li~~lL~~dp~~ 279 (350)
T 1rdq_E 207 PEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQP---IQIYEKIVSGKVRFPS-HFSS---DLKDLLRNLLQVDLTK 279 (350)
T ss_dssp HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCT-TCCH---HHHHHHHHHSCSCTTT
T ss_pred HHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCH---HHHHHHHHcCCCCCCC-CCCH---HHHHHHHHHhhcCHHh
Confidence 3544555678999999999999999999999530000 0000111111111111 1111 2345667899999999
Q ss_pred CCC-----hHHHHH
Q 003931 750 RPS-----MRFVAQ 758 (785)
Q Consensus 750 Rp~-----m~~vv~ 758 (785)
||+ +.||.+
T Consensus 280 R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 280 RFGNLKNGVNDIKN 293 (350)
T ss_dssp CTTSSTTTTHHHHT
T ss_pred ccCCccCCHHHHHh
Confidence 998 777754
No 387
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=97.12 E-value=3.8e-05 Score=79.36 Aligned_cols=82 Identities=15% Similarity=0.179 Sum_probs=48.1
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|.......+.++|||||||++.||+||+.|..-... ......+.......+. .... .+.++.-.|.+.+|++
T Consensus 190 PE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~---~~~~~~i~~~~~~~p~-~~~~---~~~~li~~~L~~dp~~ 262 (327)
T 3a62_A 190 PEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENR---KKTIDKILKCKLNLPP-YLTQ---EARDLLKKLLKRNAAS 262 (327)
T ss_dssp HHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH---HHHHHHHHHTCCCCCT-TSCH---HHHHHHHHHSCSCGGG
T ss_pred HhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCH---HHHHHHHHhCCCCCCC-CCCH---HHHHHHHHHHhcCHhh
Confidence 3444455678899999999999999999999531000 0001111111111110 1111 2345667899999999
Q ss_pred CC-----ChHHHHH
Q 003931 750 RP-----SMRFVAQ 758 (785)
Q Consensus 750 Rp-----~m~~vv~ 758 (785)
|| ++.||.+
T Consensus 263 R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 263 RLGAGPGDAGEVQA 276 (327)
T ss_dssp STTSSTTTHHHHHH
T ss_pred ccCCCCCCHHHHHc
Confidence 99 5556643
No 388
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=97.12 E-value=2.4e-05 Score=82.26 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=49.9
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+-.....+.++|||||||++.||+||+.|..-... ......++...+.-+. ....+ +..+.-.|.+.+|++
T Consensus 208 PE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~---~~~~~~i~~~~~~~~~-~~~~~---~~~li~~lL~~dp~~ 280 (373)
T 2r5t_A 208 PEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNT---AEMYDNILNKPLQLKP-NITNS---ARHLLEGLLQKDRTK 280 (373)
T ss_dssp HHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBH---HHHHHHHHHSCCCCCS-SSCHH---HHHHHHHHTCSSGGG
T ss_pred HHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCH---HHHHHHHHhcccCCCC-CCCHH---HHHHHHHHcccCHHh
Confidence 3444455678899999999999999999999530000 0001111111111111 11112 335567899999999
Q ss_pred CCChHHHHHHH
Q 003931 750 RPSMRFVAQEL 760 (785)
Q Consensus 750 Rp~m~~vv~~l 760 (785)
||++.+.+.++
T Consensus 281 R~~~~~~~~~i 291 (373)
T 2r5t_A 281 RLGAKDDFMEI 291 (373)
T ss_dssp STTTTTTHHHH
T ss_pred CCCCCCCHHHH
Confidence 99997655554
No 389
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=97.11 E-value=0.00015 Score=76.43 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=25.9
Q ss_pred hhhhhhc-ccccccceeeeehhhhhhhhCCCCC
Q 003931 670 TELAVTM-RVTDKCDVFSFGVVALEVMMGRHPG 701 (785)
Q Consensus 670 ~e~~~~~-~~t~k~DVYSfGvvlLElltgk~p~ 701 (785)
+|+..+. ..+.++||||+||++.||+||+.|.
T Consensus 231 PEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF 263 (398)
T 4b99_A 231 PELMLSLHEYTQAIDLWSVGCIFGEMLARRQLF 263 (398)
T ss_dssp HHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSS
T ss_pred HHHhcCCCCCCChhheehhHHHHHHHHHCCCCC
Confidence 4544443 4588999999999999999999995
No 390
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=97.10 E-value=8.7e-05 Score=78.22 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=44.1
Q ss_pred ccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC-hHH
Q 003931 677 RVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS-MRF 755 (785)
Q Consensus 677 ~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~-m~~ 755 (785)
..+.++|||||||++.||+||+.|...............+.......+. .... .+..+.-.|.+.+|++||+ +.+
T Consensus 193 ~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~p~-~~s~---~~~~li~~lL~~dP~~R~s~~~~ 268 (384)
T 4fr4_A 193 GYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVVTYPS-AWSQ---EMVSLLKKLLEPNPDQRFSQLSD 268 (384)
T ss_dssp CBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCCCCCCT-TSCH---HHHHHHHHHSCSSGGGSCCSHHH
T ss_pred CCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcccCCCC-cCCH---HHHHHHHHHhcCCHhHhcccHHH
Confidence 3678999999999999999999996311110000000000011111010 1111 2345667899999999999 555
Q ss_pred HH
Q 003931 756 VA 757 (785)
Q Consensus 756 vv 757 (785)
|.
T Consensus 269 l~ 270 (384)
T 4fr4_A 269 VQ 270 (384)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 391
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=97.07 E-value=0.00024 Score=79.03 Aligned_cols=80 Identities=18% Similarity=0.203 Sum_probs=49.5
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCc------hhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGE------LITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT 743 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~------~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~ 743 (785)
+|+-.....+.++||||+||++.||+||+.|.. ....+..... -+++.... ...++ ...+...|.
T Consensus 325 PEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~---~~~~~~~~---~~s~~---~~dli~~~L 395 (573)
T 3uto_A 325 PEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDW---NMDDSAFS---GISED---GKDFIRKLL 395 (573)
T ss_dssp HHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCC---CCCSGGGT---TSCHH---HHHHHHTTS
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCC---CCCccccc---CCCHH---HHHHHHHHc
Confidence 355556667889999999999999999999953 1111111000 00000000 01112 234566899
Q ss_pred CCCCCCCCChHHHHH
Q 003931 744 STTPDTRPSMRFVAQ 758 (785)
Q Consensus 744 ~~~p~~Rp~m~~vv~ 758 (785)
..+|++||++.|+.+
T Consensus 396 ~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 396 LADPNTRMTIHQALE 410 (573)
T ss_dssp CSSGGGSCCHHHHHH
T ss_pred cCChhHCcCHHHHhc
Confidence 999999999999865
No 392
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=97.06 E-value=3.3e-05 Score=80.60 Aligned_cols=77 Identities=19% Similarity=0.289 Sum_probs=46.5
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+-.....+.++||||+||++.||+||+.|..-... ......+......-+... ..+ +..+.-.|.+.+|++
T Consensus 193 PE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~---~~~~~~i~~~~~~~p~~~-~~~---~~~li~~lL~~dP~~ 265 (353)
T 3txo_A 193 PEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENE---DDLFEAILNDEVVYPTWL-HED---ATGILKSFMTKNPTM 265 (353)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCTTS-CHH---HHHHHHHHTCSSGGG
T ss_pred hhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCH---HHHHHHHHcCCCCCCCCC-CHH---HHHHHHHHhhhCHHH
Confidence 3555556678899999999999999999999531000 000111111111111101 112 335567899999999
Q ss_pred CCCh
Q 003931 750 RPSM 753 (785)
Q Consensus 750 Rp~m 753 (785)
||++
T Consensus 266 R~~~ 269 (353)
T 3txo_A 266 RLGS 269 (353)
T ss_dssp STTS
T ss_pred ccCC
Confidence 9998
No 393
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=97.06 E-value=6.1e-05 Score=79.69 Aligned_cols=80 Identities=19% Similarity=0.290 Sum_probs=47.3
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC--c---c-cccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG--E---L-FLKDVLDQRLPPPTGQLAEAVVLTINVALACT 743 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~--~---~-~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~ 743 (785)
+|+-.....+.++||||+||++.||+||+.|.+....... . . ....+....+.-+.... . .+..+.-.|.
T Consensus 222 PE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s-~---~~~~li~~lL 297 (396)
T 4dc2_A 222 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLS-V---KAASVLKSFL 297 (396)
T ss_dssp HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCCTTSC-H---HHHHHHHHHT
T ss_pred chhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCCCcCC-H---HHHHHHHHHh
Confidence 3555556678899999999999999999999642211100 0 0 01111222221111111 1 2345667899
Q ss_pred CCCCCCCCCh
Q 003931 744 STTPDTRPSM 753 (785)
Q Consensus 744 ~~~p~~Rp~m 753 (785)
+.+|++||+.
T Consensus 298 ~~dP~~R~~~ 307 (396)
T 4dc2_A 298 NKDPKERLGC 307 (396)
T ss_dssp CSCTTTSTTC
T ss_pred cCCHhHcCCC
Confidence 9999999995
No 394
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=97.06 E-value=0.00012 Score=77.60 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=23.6
Q ss_pred cccccccceeeeehhhhhhhhCCCCC
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPG 701 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~ 701 (785)
...+.++||||+||++.||+||+.|.
T Consensus 206 ~~~~~~~DiwSlG~il~ell~g~~pf 231 (388)
T 3oz6_A 206 TKYTKGIDMWSLGCILGEILCGKPIF 231 (388)
T ss_dssp CCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred CCCCChhhHHHHHHHHHHHHhCCCCC
Confidence 45788999999999999999999885
No 395
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=96.99 E-value=7.2e-05 Score=76.84 Aligned_cols=82 Identities=18% Similarity=0.199 Sum_probs=49.4
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+-.....+.++||||+||++.||+||+.|..-... ......++...+.-+. ....+ +..+.-.|...+|++
T Consensus 172 PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~---~~~~~~i~~~~~~~p~-~~~~~---~~~li~~lL~~dp~~ 244 (318)
T 1fot_A 172 PEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNT---MKTYEKILNAELRFPP-FFNED---VKDLLSRLITRDLSQ 244 (318)
T ss_dssp HHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH---HHHHHHHHHCCCCCCT-TSCHH---HHHHHHHHTCSCTTT
T ss_pred HhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCH---HHHHHHHHhCCCCCCC-CCCHH---HHHHHHHHhccCHHH
Confidence 3555556678899999999999999999999520000 0001112221111111 11112 335566899999999
Q ss_pred CC-----ChHHHHH
Q 003931 750 RP-----SMRFVAQ 758 (785)
Q Consensus 750 Rp-----~m~~vv~ 758 (785)
|| ++.||.+
T Consensus 245 R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 245 RLGNLQNGTEDVKN 258 (318)
T ss_dssp CTTSSTTTTHHHHT
T ss_pred cCCCcCCCHHHHhc
Confidence 99 7888763
No 396
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=96.98 E-value=6e-05 Score=78.43 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=46.7
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC------cccccccccCCCCCCCchhHHHHHHHHHHHhhcC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG------ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACT 743 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~------~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~ 743 (785)
+|+-.....+.++||||+||++.||+||+.|.+....... ......+......-+.... . .+..+.-.|.
T Consensus 179 PE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p~~~s-~---~~~~li~~lL 254 (345)
T 3a8x_A 179 PEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIPRSLS-V---KAASVLKSFL 254 (345)
T ss_dssp HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCCCTTSC-H---HHHHHHHHHT
T ss_pred ccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCCCCCCC-H---HHHHHHHHHh
Confidence 3444455678899999999999999999999642111000 0000111122211111111 1 2345667899
Q ss_pred CCCCCCCCCh
Q 003931 744 STTPDTRPSM 753 (785)
Q Consensus 744 ~~~p~~Rp~m 753 (785)
+.+|++||+.
T Consensus 255 ~~dP~~R~~~ 264 (345)
T 3a8x_A 255 NKDPKERLGC 264 (345)
T ss_dssp CSSTTTSTTC
T ss_pred cCCHhHCCCC
Confidence 9999999995
No 397
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=96.98 E-value=2.5e-05 Score=81.27 Aligned_cols=79 Identities=19% Similarity=0.310 Sum_probs=48.0
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccc--cCCCCCCCchhHHHHHHHHHHHhhcCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVL--DQRLPPPTGQLAEAVVLTINVALACTSTTP 747 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~--d~~l~~~~~~~~~~~~~~~~ial~C~~~~p 747 (785)
+|+-.....+.++||||+||++.||+||+.|..-... ......+. ++..... ... .+..+...|...+|
T Consensus 187 PE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~---~~~~~~i~~~~~~~p~~---~s~---~~~~li~~lL~~dp 257 (345)
T 1xjd_A 187 PEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE---EELFHSIRMDNPFYPRW---LEK---EAKDLLVKLFVREP 257 (345)
T ss_dssp HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCTT---SCH---HHHHHHHHHSCSSG
T ss_pred hhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH---HHHHHHHHhCCCCCCcc---cCH---HHHHHHHHHhcCCH
Confidence 3554555678999999999999999999999531000 00000010 1111110 111 23456678999999
Q ss_pred CCCCChH-HHH
Q 003931 748 DTRPSMR-FVA 757 (785)
Q Consensus 748 ~~Rp~m~-~vv 757 (785)
++||++. ||.
T Consensus 258 ~~R~~~~~~i~ 268 (345)
T 1xjd_A 258 EKRLGVRGDIR 268 (345)
T ss_dssp GGSBTTBSCGG
T ss_pred hHcCCChHHHH
Confidence 9999997 553
No 398
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=96.96 E-value=0.00031 Score=73.21 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=25.7
Q ss_pred hhhhhhc-ccccccceeeeehhhhhhhhCCCCC
Q 003931 670 TELAVTM-RVTDKCDVFSFGVVALEVMMGRHPG 701 (785)
Q Consensus 670 ~e~~~~~-~~t~k~DVYSfGvvlLElltgk~p~ 701 (785)
+|+-... ..+.++||||+||++.||+||+.|-
T Consensus 215 PE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf 247 (361)
T 4f9c_A 215 PEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPF 247 (361)
T ss_dssp HHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHcCCCCCCCccchhhhHHHHHHHHHCCCCC
Confidence 3544333 4678999999999999999999995
No 399
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=96.93 E-value=6.7e-05 Score=78.27 Aligned_cols=76 Identities=16% Similarity=0.343 Sum_probs=45.3
Q ss_pred hhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCC
Q 003931 671 ELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTR 750 (785)
Q Consensus 671 e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~R 750 (785)
|+-.....+.++||||+||++.||+||+.|..-... ......+......-+. .... .+..+...|...+|++|
T Consensus 191 E~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~s~---~~~~li~~lL~~dP~~R 263 (353)
T 2i0e_A 191 EIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE---DELFQSIMEHNVAYPK-SMSK---EAVAICKGLMTKHPGKR 263 (353)
T ss_dssp HHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHHCCCCCCT-TSCH---HHHHHHHHHTCSCTTSC
T ss_pred hhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCH---HHHHHHHHhCCCCCCC-CCCH---HHHHHHHHHhhcCHHHc
Confidence 444455678899999999999999999999531000 0001111111111111 1111 23456678999999999
Q ss_pred CCh
Q 003931 751 PSM 753 (785)
Q Consensus 751 p~m 753 (785)
|++
T Consensus 264 ~~~ 266 (353)
T 2i0e_A 264 LGC 266 (353)
T ss_dssp TTC
T ss_pred CCC
Confidence 975
No 400
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=96.83 E-value=0.00012 Score=83.42 Aligned_cols=77 Identities=16% Similarity=0.351 Sum_probs=47.6
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDT 749 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~ 749 (785)
+|+-.....+.++|||||||++.||+||+.|..-... ......++...+.-+. ....+ +..+.-.|.+.+|++
T Consensus 511 PE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~---~~~~~~i~~~~~~~p~-~~s~~---~~~li~~lL~~dP~~ 583 (674)
T 3pfq_A 511 PEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDE---DELFQSIMEHNVAYPK-SMSKE---AVAICKGLMTKHPGK 583 (674)
T ss_dssp HHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSH---HHHHHHHHSSCCCCCT-TSCHH---HHHHHHHHSCSSSTT
T ss_pred HhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCH---HHHHHHHHhCCCCCCc-cCCHH---HHHHHHHHccCCHHH
Confidence 4655666788999999999999999999999531000 0011112222221111 11112 345567899999999
Q ss_pred CCCh
Q 003931 750 RPSM 753 (785)
Q Consensus 750 Rp~m 753 (785)
||++
T Consensus 584 R~~~ 587 (674)
T 3pfq_A 584 RLGC 587 (674)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 9998
No 401
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=96.73 E-value=0.00017 Score=79.61 Aligned_cols=85 Identities=16% Similarity=0.124 Sum_probs=48.3
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccCccccc-ccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLK-DVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~-~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
+|+-.....+.++|||||||++.||+||+.|..-.........+. .+.......+. .... .+..+...|.+.+|+
T Consensus 354 PEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~~~~p~-~~s~---~~~dLI~~lL~~dP~ 429 (576)
T 2acx_A 354 PEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVPEEYSE-RFSP---QARSLCSQLLCKDPA 429 (576)
T ss_dssp HHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCCCCCCT-TSCH---HHHHHHHHHTCSSGG
T ss_pred HHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhcccccCCc-cCCH---HHHHHHHHhccCCHH
Confidence 355555677899999999999999999999953110000000000 00000000000 1111 234556689999999
Q ss_pred CCC-----ChHHHHH
Q 003931 749 TRP-----SMRFVAQ 758 (785)
Q Consensus 749 ~Rp-----~m~~vv~ 758 (785)
+|| ++.||.+
T Consensus 430 ~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 430 ERLGCRGGSAREVKE 444 (576)
T ss_dssp GSTTCSSSHHHHHHT
T ss_pred HcCCCCCCCHHHHHh
Confidence 999 5667653
No 402
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=96.71 E-value=0.0003 Score=77.38 Aligned_cols=81 Identities=21% Similarity=0.280 Sum_probs=47.2
Q ss_pred hhhhhhcccccccceeeeehhhhhhhhCCCCCchhhhccC-cccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVTMRVTDKCDVFSFGVVALEVMMGRHPGELITSLSG-ELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~-~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
+|+-.....+.++|||||||++.||+||+.|..-...... ......+.+.....+. .... .+..+...|.+.+|+
T Consensus 358 PE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~~~p~-~~s~---~~~~li~~lL~~dP~ 433 (543)
T 3c4z_A 358 PELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYPD-KFSP---ASKDFCEALLQKDPE 433 (543)
T ss_dssp HHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCCCCCT-TSCH---HHHHHHHHHSCSSGG
T ss_pred hhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhcccCCCc-ccCH---HHHHHHHHhccCCHh
Confidence 4555556678999999999999999999999531100000 0001111222111111 1111 233456689999999
Q ss_pred CCCChH
Q 003931 749 TRPSMR 754 (785)
Q Consensus 749 ~Rp~m~ 754 (785)
+||++.
T Consensus 434 ~R~~~~ 439 (543)
T 3c4z_A 434 KRLGFR 439 (543)
T ss_dssp GSCCCB
T ss_pred HCCCCc
Confidence 999874
No 403
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=96.60 E-value=0.00062 Score=77.95 Aligned_cols=73 Identities=11% Similarity=0.108 Sum_probs=45.7
Q ss_pred cccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCCCCCC-hHHH
Q 003931 678 VTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPDTRPS-MRFV 756 (785)
Q Consensus 678 ~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~~Rp~-m~~v 756 (785)
.+.++|||||||++.||+||+.|..- .+. .. +... ......-..+.++...|.+.+|++||+ +.++
T Consensus 253 ~~~~sDi~slG~~l~~l~~g~~~~~~-~~~------~~-----~~~~-~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l 319 (681)
T 2pzi_A 253 PTVATDIYTVGRTLAALTLDLPTRNG-RYV------DG-----LPED-DPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEM 319 (681)
T ss_dssp SCHHHHHHHHHHHHHHHHSCCCEETT-EEC------SS-----CCTT-CHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHH
T ss_pred CCCceehhhhHHHHHHHHhCCCCCcc-ccc------cc-----cccc-ccccccCHHHHHHHhhhccCChhhCCCHHHHH
Confidence 37899999999999999999877420 000 00 0000 011111123456788999999999995 5556
Q ss_pred HHHHHhc
Q 003931 757 AQELSAK 763 (785)
Q Consensus 757 v~~l~~~ 763 (785)
.+.+..+
T Consensus 320 ~~~l~~~ 326 (681)
T 2pzi_A 320 SAQLTGV 326 (681)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 404
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=96.57 E-value=0.00057 Score=72.66 Aligned_cols=24 Identities=33% Similarity=0.627 Sum_probs=22.7
Q ss_pred cccccceeeeehhhhhhhhCCCCC
Q 003931 678 VTDKCDVFSFGVVALEVMMGRHPG 701 (785)
Q Consensus 678 ~t~k~DVYSfGvvlLElltgk~p~ 701 (785)
.+.++|||||||++.||+||+.|.
T Consensus 250 ~~~~~DiwSlGvilyell~G~~Pf 273 (410)
T 3v8s_A 250 YGRECDWWSVGVFLYEMLVGDTPF 273 (410)
T ss_dssp EETHHHHHHHHHHHHHHHHSSCTT
T ss_pred CCCcceEecchHHHHHHHhCCCCC
Confidence 678999999999999999999995
No 405
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=96.56 E-value=0.0011 Score=71.15 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=22.3
Q ss_pred hcccccccceeeeehhhhhhhhCCCC
Q 003931 675 TMRVTDKCDVFSFGVVALEVMMGRHP 700 (785)
Q Consensus 675 ~~~~t~k~DVYSfGvvlLElltgk~p 700 (785)
....+.++||||+||++.||+||+.|
T Consensus 226 ~~~~~~~~DiwSlG~il~ell~g~~p 251 (432)
T 3n9x_A 226 QENYTKSIDIWSTGCIFAELLNMLQS 251 (432)
T ss_dssp CSCCCTHHHHHHHHHHHHHHHTTCTT
T ss_pred CCCCCcccccchHHHHHHHHHhcccc
Confidence 44578899999999999999987665
No 406
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=96.45 E-value=0.0006 Score=74.03 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=21.9
Q ss_pred hcccccccceeeeehhhhhhhhCCCC
Q 003931 675 TMRVTDKCDVFSFGVVALEVMMGRHP 700 (785)
Q Consensus 675 ~~~~t~k~DVYSfGvvlLElltgk~p 700 (785)
....+.++|||||||++.||+||.+|
T Consensus 258 ~~~~~~~~DiwSlG~il~elltg~~~ 283 (458)
T 3rp9_A 258 QENYTEAIDVWSIGCIFAELLNMIKE 283 (458)
T ss_dssp CCCCCTHHHHHHHHHHHHHHHTTSTT
T ss_pred CCCCCcHhHHHHHHHHHHHHHHhccc
Confidence 44578999999999999999996544
No 407
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=96.37 E-value=0.00045 Score=74.05 Aligned_cols=27 Identities=33% Similarity=0.583 Sum_probs=24.5
Q ss_pred hcccccccceeeeehhhhhhhhCCCCC
Q 003931 675 TMRVTDKCDVFSFGVVALEVMMGRHPG 701 (785)
Q Consensus 675 ~~~~t~k~DVYSfGvvlLElltgk~p~ 701 (785)
....+.++|||||||++.||+||+.|.
T Consensus 255 ~~~~~~~~DvwSlGvil~elltG~~Pf 281 (437)
T 4aw2_A 255 KGRYGPECDWWSLGVCMYEMLYGETPF 281 (437)
T ss_dssp CCEECTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CCCCCCcCeeHHHHHHHHHHHhCCCCC
Confidence 356789999999999999999999995
No 408
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.36 E-value=0.00083 Score=62.25 Aligned_cols=12 Identities=17% Similarity=0.277 Sum_probs=6.2
Q ss_pred CCCCCcEEECCC
Q 003931 100 NLGKLEYLNLTE 111 (785)
Q Consensus 100 ~l~~L~~L~Ls~ 111 (785)
+-+.|++|+|++
T Consensus 39 ~n~~L~~L~L~~ 50 (197)
T 1pgv_A 39 DDTDLKEVNINN 50 (197)
T ss_dssp TCSSCCEEECTT
T ss_pred cCCCccEEECCC
Confidence 344555555555
No 409
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.25 E-value=0.0013 Score=60.96 Aligned_cols=66 Identities=12% Similarity=0.074 Sum_probs=30.2
Q ss_pred CCCCCccEEECCCC-CCcccCC---hhhhcCCCCCcEEECCCCCCcccCCc----cccCCCCCcEEEcCCCccc
Q 003931 74 LTCRNLTYLDLSLN-KLSGLIP---ERLFTNLGKLEYLNLTENQFQGKLSP----NVSKLSNLIDLRLATNKFS 139 (785)
Q Consensus 74 ~~l~~L~~L~Ls~n-~i~~~~~---~~~f~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~~~ 139 (785)
..-+.|+.|+|+++ .|...-- ...+..-..|++|+|++|.|...... ++..-+.|+.|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 34456777777664 5542110 11123445566666666665532222 1222344455555554443
No 410
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.13 E-value=0.0094 Score=51.42 Aligned_cols=56 Identities=23% Similarity=0.275 Sum_probs=38.8
Q ss_pred eecccCCccc-CcCCcccccCCCCCeEecCCCcCccCCCccccccCCCcEEeCCCCcCc
Q 003931 540 NLNLSNNHLT-GEIPKSISNLTELAYLDLSNNKLTGDVPQELGRFDKLLSLNLSHNDLS 597 (785)
Q Consensus 540 ~L~ls~n~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 597 (785)
.++.+++.++ ..+|..+ .++|++|+|++|+|+...+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666664 2344432 245778888888888777777788888888888888775
No 411
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=95.98 E-value=0.0019 Score=68.69 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.9
Q ss_pred cccccccceeeeehhhhhhhhCCCCC
Q 003931 676 MRVTDKCDVFSFGVVALEVMMGRHPG 701 (785)
Q Consensus 676 ~~~t~k~DVYSfGvvlLElltgk~p~ 701 (785)
...+.++|||||||++.||+||+.|.
T Consensus 245 ~~~~~~~DiwSlGvilyelltG~~Pf 270 (412)
T 2vd5_A 245 GSYGPECDWWALGVFAYEMFYGQTPF 270 (412)
T ss_dssp SEECTHHHHHHHHHHHHHHHHSSCTT
T ss_pred CCCChHHhhhHHhHHHHHHHhCCCCC
Confidence 46789999999999999999999995
No 412
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.83 E-value=0.014 Score=50.26 Aligned_cols=34 Identities=32% Similarity=0.346 Sum_probs=14.5
Q ss_pred ccEEECCCCCCcccCChhhhcCCCCCcEEECCCCC
Q 003931 79 LTYLDLSLNKLSGLIPERLFTNLGKLEYLNLTENQ 113 (785)
Q Consensus 79 L~~L~Ls~n~i~~~~~~~~f~~l~~L~~L~Ls~n~ 113 (785)
|++|+|++|.|+ .+|..+|..+++|++|+|++|.
T Consensus 33 l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 33 TTELVLTGNNLT-ALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp CSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSC
T ss_pred CCEEECCCCcCC-ccChhhhhhccccCEEEecCCC
Confidence 444444444444 3444444444444444444443
No 413
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=95.71 E-value=0.002 Score=71.70 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=43.7
Q ss_pred hhhhhh-cccccccceeeeehhhhhhhhCCCCCchhhhccCcccccccccCCCCCCCchhHHHHHHHHHHHhhcCCCCCC
Q 003931 670 TELAVT-MRVTDKCDVFSFGVVALEVMMGRHPGELITSLSGELFLKDVLDQRLPPPTGQLAEAVVLTINVALACTSTTPD 748 (785)
Q Consensus 670 ~e~~~~-~~~t~k~DVYSfGvvlLElltgk~p~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~ial~C~~~~p~ 748 (785)
+|+-.. ...+.++|+||+||++.||+||+.|..-............+......-+. ....+ +..+.-.|...+|+
T Consensus 359 PEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p~-~~S~~---a~dLI~~lL~~dP~ 434 (689)
T 3v5w_A 359 PEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPD-SFSPE---LRSLLEGLLQRDVN 434 (689)
T ss_dssp HHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCCT-TSCHH---HHHHHHHHTCSCGG
T ss_pred HHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCCCCCc-cCCHH---HHHHHHHHccCCHh
Confidence 354432 34678999999999999999999995210000000000111111111111 11112 23456679999999
Q ss_pred CCCC
Q 003931 749 TRPS 752 (785)
Q Consensus 749 ~Rp~ 752 (785)
+|++
T Consensus 435 ~Rl~ 438 (689)
T 3v5w_A 435 RRLG 438 (689)
T ss_dssp GCTT
T ss_pred HCCC
Confidence 9998
No 414
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=87.20 E-value=1.5 Score=35.27 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=23.3
Q ss_pred CCCCCCccccCCCCCCcEEEccCCCCcccCCccCCCCCCccEEECCC
Q 003931 40 FLETPDWSKFSSMPSLTHLGLYLNELTLEFPSFILTCRNLTYLDLSL 86 (785)
Q Consensus 40 ~i~~~~~~~f~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 86 (785)
.++.|...+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 344555555555555555555443 3334444555555555555544
No 415
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=85.60 E-value=1.5 Score=35.32 Aligned_cols=50 Identities=16% Similarity=0.075 Sum_probs=43.7
Q ss_pred CCCCCCCccccccCCCCCCEEeCCCCCCCCCCccccCCCCCCcEEEccCCC
Q 003931 14 DNNLNGAIPFQLSSLRKVRYLDLGGNFLETPDWSKFSSMPSLTHLGLYLNE 64 (785)
Q Consensus 14 ~n~i~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~f~~l~~L~~L~L~~n~ 64 (785)
+..++.+...+|.+|.+|+.+.+-.+ ++.|...+|.+|.+|+.+.+....
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCCC
Confidence 44577788899999999999999875 889999999999999999998754
No 416
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=37.13 E-value=9.6 Score=38.37 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=20.1
Q ss_pred ccccceeeeehh-hhhhhhCCCCCc
Q 003931 679 TDKCDVFSFGVV-ALEVMMGRHPGE 702 (785)
Q Consensus 679 t~k~DVYSfGvv-lLElltgk~p~~ 702 (785)
+.++||||+|+. .-|+.+|+.|..
T Consensus 254 ~~~~Diwsl~~~~~~~~~~g~~p~~ 278 (336)
T 2vuw_A 254 DYQFDIYRLMKKENNNRWGEYHPYS 278 (336)
T ss_dssp SHHHHHHHHHHHHHTTCTTSCCTHH
T ss_pred ccceehhhhhCCCCcccccccCCCc
Confidence 779999998766 777899999964
No 417
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=25.52 E-value=38 Score=18.85 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=11.4
Q ss_pred hHHHHHHHHhcccc
Q 003931 753 MRFVAQELSAKTQA 766 (785)
Q Consensus 753 m~~vv~~l~~~~~~ 766 (785)
|+||++.+++..++
T Consensus 4 MkDvlql~qQy~qs 17 (26)
T 1kdl_A 4 MKDVLRLIEQYVSS 17 (26)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 89999999887554
Done!