BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003933
(785 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3
PE=1 SV=2
Length = 572
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 99/173 (57%), Gaps = 14/173 (8%)
Query: 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLS 257
+ ++ + +VP+ VG +IG+ G+ I +Q SG KIQI ++ P RP + GT
Sbjct: 76 TVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPE---RPCVLTGTPE 132
Query: 258 NIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGET 317
+I++A++L+ ++ G G S + Q EI +P KVGL+IGRGGET
Sbjct: 133 SIEQAKRLLGQIVDRCRNG-------PGFHNDIDSNSTIQ-EILIPASKVGLVIGRGGET 184
Query: 318 IKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370
IK LQ R+G ++ ++ LP G ++ +R+TGD +++ A+EM+ E++ +
Sbjct: 185 IKQLQERTGVKMVMIQDGPLPTG---ADKPLRITGDAFKVQQAREMVLEIIRE 234
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 89/179 (49%), Gaps = 13/179 (7%)
Query: 201 SRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNID 260
S ++ VP VG++IG+ G+ I+ +Q ++G +IQ D P R +++G
Sbjct: 255 SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPE---RAAQVMGPPDRCQ 311
Query: 261 KAEKLINAVIAEAD--------AGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIG 312
A +I+ +I A A RG + A G +++ VP +K GL+IG
Sbjct: 312 HAAHIISELILTAQERDGFGGLAAARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLVIG 371
Query: 313 RGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 371
+GGE IK + +SGA ++ + ++ P R + G +QIE+A+++I E + T
Sbjct: 372 KGGENIKSINQQSGAHVE--LQRNPPPNSDPNLRRFTIRGVPQQIEVARQLIDEKVGGT 428
>sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1
PE=1 SV=3
Length = 644
Score = 95.1 bits (235), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 101/171 (59%), Gaps = 14/171 (8%)
Query: 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLS 257
S M+ + +VP+ VG +IG+ G+ I +Q SG KIQI D+ P R + GT
Sbjct: 99 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPE---RSCMLTGTPE 155
Query: 258 NIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGET 317
++ A++L++ ++ + G P A G G A Q EI +P K GL+IG+GGET
Sbjct: 156 SVQSAKRLLDQIVEK----GRP---APGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGET 207
Query: 318 IKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVL 368
IK LQ R+G +++++ Q P+ G+ ++ +R+TGD +++ A+EM+ E++
Sbjct: 208 IKQLQERAG--VKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 255
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 105/205 (51%), Gaps = 23/205 (11%)
Query: 171 ESVEPSNVVPQQVVDNSK-------SDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIR 223
ESV+ + + Q+V+ + D P + ++I +P +K G++IGK G+TI+
Sbjct: 155 ESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNA-----VQEIMIPASKAGLVIGKGGETIK 209
Query: 224 YLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVA 283
LQ +G K+ + +D + A +P+ I G + +A++++ +I D GG +
Sbjct: 210 QLQERAGVKMVMIQDGPQN-TGADKPLRITGDPYKVQQAKEMVLELIR--DQGGFREVRN 266
Query: 284 RGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGS 343
G E +++ +P VG++IGR GE IK +Q +G RI Q P+ +
Sbjct: 267 E---YGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRI-----QFKPDDGTT 318
Query: 344 KERIVRVTGDMRQIEIAQEMIKEVL 368
ERI ++TG + + A E+I ++L
Sbjct: 319 PERIAQITGPPDRCQHAAEIITDLL 343
Score = 70.1 bits (170), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 13/179 (7%)
Query: 204 IEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAE 263
+ +P VG++IG+ G+ I+ +Q ++G +IQ D P R +I G A
Sbjct: 280 VPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPE---RIAQITGPPDRCQHAA 336
Query: 264 KLINAVIAEADAGGSPSLVARGLATAQAS--------GAAEQVEIKVPNEKVGLIIGRGG 315
++I ++ AG G + G ++ VP K GLIIG+GG
Sbjct: 337 EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGG 396
Query: 316 ETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTVRP 374
ETIK + +SGARI+ + ++ P ++ + G +QI+ A+++I+E + V P
Sbjct: 397 ETIKSISQQSGARIE--LQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPVNP 453
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 299 EIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIE 358
E KVP+ VG IIGRGGE I +Q SG +IQ+ P+ G ER +TG ++
Sbjct: 104 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQI-----APDSGGLPERSCMLTGTPESVQ 158
Query: 359 IAQEMIKEVLSQ 370
A+ ++ +++ +
Sbjct: 159 SAKRLLDQIVEK 170
>sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein 1 OS=Mus musculus GN=Fubp1
PE=1 SV=1
Length = 651
Score = 94.4 bits (233), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 101/171 (59%), Gaps = 14/171 (8%)
Query: 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLS 257
S M+ + +VP+ VG +IG+ G+ I +Q SG KIQI D+ P R + GT
Sbjct: 95 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPE---RSCMLTGTPE 151
Query: 258 NIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGET 317
++ A++L++ ++ + G P A G G A Q EI +P K GL+IG+GGET
Sbjct: 152 SVQSAKRLLDQIVEK----GRP---APGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGET 203
Query: 318 IKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVL 368
IK LQ R+G +++++ Q P+ G+ ++ +R+TGD +++ A+EM+ E++
Sbjct: 204 IKQLQERAG--VKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 251
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 105/205 (51%), Gaps = 23/205 (11%)
Query: 171 ESVEPSNVVPQQVVDNSK-------SDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIR 223
ESV+ + + Q+V+ + D P + ++I +P +K G++IGK G+TI+
Sbjct: 151 ESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNA-----VQEIMIPASKAGLVIGKGGETIK 205
Query: 224 YLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVA 283
LQ +G K+ + +D + A +P+ I G + +A++++ +I D GG +
Sbjct: 206 QLQERAGVKMVMIQDGPQN-TGADKPLRITGDPYKVQQAKEMVLELIR--DQGGFREVRN 262
Query: 284 RGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGS 343
G E +++ +P VG++IGR GE IK +Q +G RIQ P+ +
Sbjct: 263 E---YGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQF-----KPDDGTT 314
Query: 344 KERIVRVTGDMRQIEIAQEMIKEVL 368
+RI ++TG + + A E+I ++L
Sbjct: 315 PDRIAQITGPPDRCQHAAEIITDLL 339
Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 85/179 (47%), Gaps = 13/179 (7%)
Query: 204 IEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAE 263
+ +P VG++IG+ G+ I+ +Q ++G +IQ D P R +I G A
Sbjct: 276 VPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPD---RIAQITGPPDRCQHAA 332
Query: 264 KLINAVIAEADAGGSPSLVARGLATAQAS--------GAAEQVEIKVPNEKVGLIIGRGG 315
++I ++ AG G + G ++ VP K GLIIG+GG
Sbjct: 333 EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGG 392
Query: 316 ETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTVRP 374
ETIK + +SGARI+ + + P ++ + G +QI+ A+++I+E + V P
Sbjct: 393 ETIKSISQQSGARIE--LQRSPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPVNP 449
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 5/72 (6%)
Query: 299 EIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIE 358
E KVP+ VG IIGRGGE I +Q SG +IQ+ P+ G ER +TG ++
Sbjct: 100 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQI-----APDSGGLPERSCMLTGTPESVQ 154
Query: 359 IAQEMIKEVLSQ 370
A+ ++ +++ +
Sbjct: 155 SAKRLLDQIVEK 166
>sp|Q32PX7|FUBP1_RAT Far upstream element-binding protein 1 OS=Rattus norvegicus
GN=Fubp1 PE=1 SV=1
Length = 639
Score = 94.4 bits (233), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 101/171 (59%), Gaps = 14/171 (8%)
Query: 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLS 257
S M+ + +VP+ VG +IG+ G+ I +Q SG KIQI D+ P R + GT
Sbjct: 94 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPE---RSCMLTGTPE 150
Query: 258 NIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGET 317
++ A++L++ ++ + G P A G G A Q EI +P K GL+IG+GGET
Sbjct: 151 SVQSAKRLLDQIVEK----GRP---APGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGET 202
Query: 318 IKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVL 368
IK LQ R+G +++++ Q P+ G+ ++ +R+TGD +++ A+EM+ E++
Sbjct: 203 IKQLQERAG--VKMVMIQDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 250
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 105/205 (51%), Gaps = 23/205 (11%)
Query: 171 ESVEPSNVVPQQVVDNSK-------SDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIR 223
ESV+ + + Q+V+ + D P + ++I +P +K G++IGK G+TI+
Sbjct: 150 ESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNA-----VQEIMIPASKAGLVIGKGGETIK 204
Query: 224 YLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVA 283
LQ +G K+ + +D + A +P+ I G + +A++++ +I D GG +
Sbjct: 205 QLQERAGVKMVMIQDGPQN-TGADKPLRITGDPYKVQQAKEMVLELIR--DQGGFREVRN 261
Query: 284 RGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGS 343
G E +++ +P VG++IGR GE IK +Q +G RI Q P+ +
Sbjct: 262 E---YGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRI-----QFKPDDGTT 313
Query: 344 KERIVRVTGDMRQIEIAQEMIKEVL 368
+RI ++TG + + A E+I ++L
Sbjct: 314 PDRIAQITGPPDRCQHAAEIITDLL 338
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 86/179 (48%), Gaps = 13/179 (7%)
Query: 204 IEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAE 263
+ +P VG++IG+ G+ I+ +Q ++G +IQ D P R +I G A
Sbjct: 275 VPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPD---RIAQITGPPDRCQHAA 331
Query: 264 KLINAVIAEADAGGSPSLVARGLATAQAS--------GAAEQVEIKVPNEKVGLIIGRGG 315
++I ++ AG G + G ++ VP K GLIIG+GG
Sbjct: 332 EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGG 391
Query: 316 ETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTVRP 374
ETIK + +SGARI+ + ++ P ++ + G +QI+ A+++I+E + V P
Sbjct: 392 ETIKSISQQSGARIE--LQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKIGGPVNP 448
>sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 OS=Rattus norvegicus
GN=Khsrp PE=1 SV=1
Length = 721
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 112/201 (55%), Gaps = 24/201 (11%)
Query: 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLS 257
++M+ + VP+ VG++IG+ G+ I +Q +SG K+QI+ D+ P R V + G
Sbjct: 144 TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE---RSVSLTGAPE 200
Query: 258 NIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGET 317
++ KA+ +++ +++ GG P A +G + EI +P K GL+IG+GGET
Sbjct: 201 SVQKAKMMLDDIVSRG-RGGPPGQFHDN-ANGGQNGTVQ--EIMIPAGKAGLVIGKGGET 256
Query: 318 IKGLQTRSGARIQVLIPQHLPEGDGSK----ERIVRVTGDMRQIEIAQEMIKEVLSQTVR 373
IK LQ R+G ++ +LI DGS+ ++ +R+ GD +++ A EM+ ++L + +
Sbjct: 257 IKQLQERAGVKM-ILIQ------DGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQ 309
Query: 374 PSTLSGGF-NQQAYRPRVPTG 393
GGF ++ Y RV G
Sbjct: 310 -----GGFGDRNEYGSRVGGG 325
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 105/210 (50%), Gaps = 21/210 (10%)
Query: 171 ESVEPSNVVPQQVVDNSKSDDPSSTDDST------MSRKIEVPNNKVGVLIGKAGDTIRY 224
ESV+ + ++ +V + P D+ ++I +P K G++IGK G+TI+
Sbjct: 200 ESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQ 259
Query: 225 LQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVAR 284
LQ +G K+ + +D + + +P+ IIG + +A +++ ++ E D GG
Sbjct: 260 LQERAGVKMILIQDGSQNTNV-DKPLRIIGDPYKVQQACEMVMDILRERDQGGF------ 312
Query: 285 GLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSK 344
G S +++ VP VG++IGR GE IK +Q +G RIQ + DG+
Sbjct: 313 GDRNEYGSRVGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQ------FKQDDGTG 366
Query: 345 -ERIVRVTGDMRQIEIAQEMIKEVLSQTVR 373
E+I + G + E A +I ++L Q++R
Sbjct: 367 PEKIAHIMGPPDRCEHAARIINDLL-QSLR 395
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 87/174 (50%), Gaps = 14/174 (8%)
Query: 204 IEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAE 263
+ VP + VGV+IG++G+ I+ +Q ++G +IQ +D P + I+G + A
Sbjct: 328 VPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPE---KIAHIMGPPDRCEHAA 384
Query: 264 KLINAVIAEADAGGSPSLVARGLATAQASGAAE---------QVEIKVPNEKVGLIIGRG 314
++IN ++ +G A G+ ++ +P K GL+IGRG
Sbjct: 385 RIINDLLQSLRSGPPGPPGAPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRG 444
Query: 315 GETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVL 368
GE +K + ++GA ++ I + LP ++ + G +QI+ A+++I+E +
Sbjct: 445 GENVKAINQQTGAFVE--ISRQLPPNGDPNFKLFVIRGSPQQIDHAKQLIEEKI 496
>sp|Q3U0V1|FUBP2_MOUSE Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp
PE=1 SV=2
Length = 748
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 112/201 (55%), Gaps = 24/201 (11%)
Query: 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLS 257
++M+ + VP+ VG++IG+ G+ I +Q +SG K+QI+ D+ P R V + G
Sbjct: 144 TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE---RSVSLTGAPE 200
Query: 258 NIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGET 317
++ KA+ +++ +++ GG P A +G + EI +P K GL+IG+GGET
Sbjct: 201 SVQKAKMMLDDIVSRG-RGGPPGQFHDN-ANGGQNGTVQ--EIMIPAGKAGLVIGKGGET 256
Query: 318 IKGLQTRSGARIQVLIPQHLPEGDGSK----ERIVRVTGDMRQIEIAQEMIKEVLSQTVR 373
IK LQ R+G ++ +LI DGS+ ++ +R+ GD +++ A EM+ ++L + +
Sbjct: 257 IKQLQERAGVKM-ILIQ------DGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQ 309
Query: 374 PSTLSGGF-NQQAYRPRVPTG 393
GGF ++ Y RV G
Sbjct: 310 -----GGFGDRNEYGSRVGGG 325
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 105/210 (50%), Gaps = 21/210 (10%)
Query: 171 ESVEPSNVVPQQVVDNSKSDDPSSTDDST------MSRKIEVPNNKVGVLIGKAGDTIRY 224
ESV+ + ++ +V + P D+ ++I +P K G++IGK G+TI+
Sbjct: 200 ESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQ 259
Query: 225 LQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVAR 284
LQ +G K+ + +D + + +P+ IIG + +A +++ ++ E D GG
Sbjct: 260 LQERAGVKMILIQDGSQNTNV-DKPLRIIGDPYKVQQACEMVMDILRERDQGGF------ 312
Query: 285 GLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSK 344
G S +++ VP VG++IGR GE IK +Q +G RIQ + DG+
Sbjct: 313 GDRNEYGSRVGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQ------FKQDDGTG 366
Query: 345 -ERIVRVTGDMRQIEIAQEMIKEVLSQTVR 373
E+I + G + E A +I ++L Q++R
Sbjct: 367 PEKIAHIMGPPDRCEHAARIINDLL-QSLR 395
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 87/174 (50%), Gaps = 14/174 (8%)
Query: 204 IEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAE 263
+ VP + VGV+IG++G+ I+ +Q ++G +IQ +D P + I+G + A
Sbjct: 328 VPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPE---KIAHIMGPPDRCEHAA 384
Query: 264 KLINAVIAEADAGGSPSLVARGLATAQASGAAE---------QVEIKVPNEKVGLIIGRG 314
++IN ++ +G A G+ ++ +P K GL+IGRG
Sbjct: 385 RIINDLLQSLRSGPPGPPGAPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRG 444
Query: 315 GETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVL 368
GE +K + ++GA ++ I + LP ++ + G +QI+ A+++I+E +
Sbjct: 445 GENVKAINQQTGAFVE--ISRQLPPNGDPNFKLFVIRGSPQQIDHAKQLIEEKI 496
>sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein 2 OS=Homo sapiens GN=KHSRP
PE=1 SV=4
Length = 711
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 112/201 (55%), Gaps = 24/201 (11%)
Query: 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLS 257
++M+ + VP+ VG++IG+ G+ I +Q +SG K+QI+ D+ P R V + G
Sbjct: 143 TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE---RSVSLTGAPE 199
Query: 258 NIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGET 317
++ KA+ +++ +++ GG P A +G + EI +P K GL+IG+GGET
Sbjct: 200 SVQKAKMMLDDIVSRG-RGGPPGQFHDN-ANGGQNGTVQ--EIMIPAGKAGLVIGKGGET 255
Query: 318 IKGLQTRSGARIQVLIPQHLPEGDGSK----ERIVRVTGDMRQIEIAQEMIKEVLSQTVR 373
IK LQ R+G ++ +LI DGS+ ++ +R+ GD +++ A EM+ ++L + +
Sbjct: 256 IKQLQERAGVKM-ILIQ------DGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQ 308
Query: 374 PSTLSGGF-NQQAYRPRVPTG 393
GGF ++ Y R+ G
Sbjct: 309 -----GGFGDRNEYGSRIGGG 324
Score = 84.7 bits (208), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 105/210 (50%), Gaps = 21/210 (10%)
Query: 171 ESVEPSNVVPQQVVDNSKSDDPSSTDDST------MSRKIEVPNNKVGVLIGKAGDTIRY 224
ESV+ + ++ +V + P D+ ++I +P K G++IGK G+TI+
Sbjct: 199 ESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQ 258
Query: 225 LQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVAR 284
LQ +G K+ + +D + + +P+ IIG + +A +++ ++ E D GG
Sbjct: 259 LQERAGVKMILIQDGSQNTNV-DKPLRIIGDPYKVQQACEMVMDILRERDQGGF------ 311
Query: 285 GLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSK 344
G S +++ VP VG++IGR GE IK +Q +G RIQ + DG+
Sbjct: 312 GDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQ------FKQDDGTG 365
Query: 345 -ERIVRVTGDMRQIEIAQEMIKEVLSQTVR 373
E+I + G + E A +I ++L Q++R
Sbjct: 366 PEKIAHIMGPPDRCEHAARIINDLL-QSLR 394
>sp|Q8UVD9|FUBP2_CHICK Far upstream element-binding protein 2 OS=Gallus gallus GN=KHSRP
PE=1 SV=1
Length = 769
Score = 87.4 bits (215), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 101/178 (56%), Gaps = 21/178 (11%)
Query: 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLS 257
+T++ + VP+ VG++IG+ G+ I +Q +SG K+QI+ D+ P R V + G+
Sbjct: 207 TTVTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE---RSVSLTGSPE 263
Query: 258 NIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQV-EIKVPNEKVGLIIGRGGE 316
+ KA+ +++ +++ GG P G A+G V EI +P K GL+IG+GGE
Sbjct: 264 AVQKAKLMLDDIVSRG-RGGPP-----GQFHDYANGQNGTVQEIMIPAGKAGLVIGKGGE 317
Query: 317 TIKGLQTRSGARIQVLIPQHLPEGDGSK----ERIVRVTGDMRQIEIAQEMIKEVLSQ 370
TIK LQ R+G ++ + DGS+ ++ +R+ GD +++ A EM+ ++L +
Sbjct: 318 TIKQLQERAGVKMIFI-------QDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 368
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 104/209 (49%), Gaps = 20/209 (9%)
Query: 171 ESVEPSNVVPQQVVDNSKSDDPSSTDD-----STMSRKIEVPNNKVGVLIGKAGDTIRYL 225
E+V+ + ++ +V + P D + ++I +P K G++IGK G+TI+ L
Sbjct: 263 EAVQKAKLMLDDIVSRGRGGPPGQFHDYANGQNGTVQEIMIPAGKAGLVIGKGGETIKQL 322
Query: 226 QYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARG 285
Q +G K+ +D + + +P+ IIG + +A +++ ++ E D GG G
Sbjct: 323 QERAGVKMIFIQDGSQNTNV-DKPLRIIGDPYKVQQACEMVMDILRERDQGGF------G 375
Query: 286 LATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSK- 344
S +++ VP VG++IGR GE IK +Q +G RIQ + DG+
Sbjct: 376 DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQ------FKQDDGTGP 429
Query: 345 ERIVRVTGDMRQIEIAQEMIKEVLSQTVR 373
E+I + G + E A +I ++L Q++R
Sbjct: 430 EKIAHIMGPPERCEHAARIINDLL-QSLR 457
Score = 67.4 bits (163), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 13/173 (7%)
Query: 204 IEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAE 263
+ VP + VGV+IG++G+ I+ +Q ++G +IQ +D P + I+G + A
Sbjct: 390 VPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPE---KIAHIMGPPERCEHAA 446
Query: 264 KLINAVIAEADAGGSPSLVARGLATAQASGAAEQV--------EIKVPNEKVGLIIGRGG 315
++IN ++ +G + G + + +P K GL+IGRGG
Sbjct: 447 RIINDLLQSLRSGPPGPPGHGMPPGGRGRGRGQGIWGPPGGEMTFSIPTHKCGLVIGRGG 506
Query: 316 ETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVL 368
E +K + + GA ++ I + LP ++ + G +QIE A++ I+E +
Sbjct: 507 ENVKAINQQRGAFVE--ISRQLPPNGDPNFKLFIIRGSPQQIEHAKQPIEEKI 557
>sp|Q80WA4|NOVA1_RAT RNA-binding protein Nova-1 (Fragment) OS=Rattus norvegicus GN=Nova1
PE=2 SV=1
Length = 474
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 15/176 (8%)
Query: 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGT 255
+D K+ +P+ G +IGK G TI LQ +GA I++++ D P R I GT
Sbjct: 45 EDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT 104
Query: 256 LSNIDKAEKLINAVIAEADAGGSPSLVARG--LATAQASGAA-----EQVEIKVPNEKVG 308
+ ++ I I E P VA+ ++ Q +QV+I VPN G
Sbjct: 105 IEALNAVHGFIAEKIREM-----PQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAG 159
Query: 309 LIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMI 364
LIIG+GG T+K + +SGA +Q+ P+G +ER+V V+G+ Q A E+I
Sbjct: 160 LIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNRKAVELI 212
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 194 STDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEII 253
STD S +I VP N VG ++GK G T+ Q +GA+IQI++ + P R V I
Sbjct: 391 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 450
Query: 254 GTLSNIDKAEKLI 266
GT + A+ LI
Sbjct: 451 GTPAATQAAQYLI 463
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 14/88 (15%)
Query: 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQV-----LIPQHLPEGDGSKERI 347
G+ + VEI VP VG I+G+GG+T+ Q +GARIQ+ +P G++ R
Sbjct: 394 GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP-------GTRNRK 446
Query: 348 VRVTGDMRQIEIAQEMIKEVLS--QTVR 373
V +TG + AQ +I + ++ Q VR
Sbjct: 447 VTITGTPAATQAAQYLITQRITYEQGVR 474
>sp|Q2PFW9|NOVA1_MACFA RNA-binding protein Nova-1 OS=Macaca fascicularis GN=NOVA1 PE=2
SV=1
Length = 483
Score = 76.3 bits (186), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 88/176 (50%), Gaps = 15/176 (8%)
Query: 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGT 255
+D K+ +P+ G +IGK G TI LQ +GA I++++ D P R I GT
Sbjct: 46 EDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT 105
Query: 256 LSNIDKAEKLINAVIAEADAGGSPSLVARG--LATAQASGAA-----EQVEIKVPNEKVG 308
+ ++ I I E P VA+ ++ Q +QV+I VPN G
Sbjct: 106 VEALNAVHGFIAEKIREM-----PQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAG 160
Query: 309 LIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMI 364
LIIG+GG T+K + +SGA +Q+ P+G +ER+V V+G+ Q A E+I
Sbjct: 161 LIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQNRKAVELI 213
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 194 STDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEII 253
STD S +I VP N VG ++GK G T+ Q +GA+IQI++ + P R V I
Sbjct: 392 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 451
Query: 254 GTLSNIDKAEKLI 266
GT + A+ LI
Sbjct: 452 GTPAATQAAQYLI 464
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 14/88 (15%)
Query: 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQV-----LIPQHLPEGDGSKERI 347
G+ + VEI VP VG I+G+GG+T+ Q +GARIQ+ +P G++ R
Sbjct: 395 GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP-------GTRNRK 447
Query: 348 VRVTGDMRQIEIAQEMIKEVLS--QTVR 373
V +TG + AQ +I + ++ Q VR
Sbjct: 448 VTITGTPAATQAAQYLITQRITYEQGVR 475
>sp|Q9UNW9|NOVA2_HUMAN RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1
Length = 492
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 8/187 (4%)
Query: 180 PQQVVDNSKSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDA 239
P +VV +S+ + ++ K+ +P+ G +IGK G TI LQ +GA I++++
Sbjct: 16 PPEVVCTKRSN---TGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSK 72
Query: 240 DADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLA--TAQASGAAEQ 297
D P R + GT ++ I + E + V L T A+Q
Sbjct: 73 DFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQ 132
Query: 298 VEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQI 357
++ VPN GLIIG+GG T+K + +SGA +Q+ PEG +ER+V V+G+ Q+
Sbjct: 133 AKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPEGINLQERVVTVSGEPEQV 189
Query: 358 EIAQEMI 364
A I
Sbjct: 190 HKAVSAI 196
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 9/98 (9%)
Query: 281 LVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIP-QHLPE 339
L A LA A A E VEI VP VG I+G+GG+T+ Q +GARIQ+ + LP
Sbjct: 395 LTAEKLA---AESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP- 450
Query: 340 GDGSKERIVRVTGDMRQIEIAQEMIKEVLS--QTVRPS 375
G++ R V +TG + AQ +I + ++ Q VR S
Sbjct: 451 --GTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRAS 486
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
+I VP N VG ++GK G T+ Q +GA+IQI++ + P R V I G+ + A
Sbjct: 410 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 469
Query: 263 EKLIN 267
+ LI+
Sbjct: 470 QYLIS 474
>sp|Q9JKN6|NOVA1_MOUSE RNA-binding protein Nova-1 OS=Mus musculus GN=Nova1 PE=1 SV=2
Length = 507
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 87/188 (46%), Gaps = 29/188 (15%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
K+ +P+ G +IGK G TI LQ +GA I++++ D P R I GT+ ++
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAV 112
Query: 263 EKLINAVIAEA---------------DAGGSPSLVARGLATA-----------QASGAAE 296
I I E +P + + L ++ + A
Sbjct: 113 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRAN 172
Query: 297 QVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQ 356
QV+I VPN GLIIG+GG T+K + +SGA +Q+ P+G +ER+V V+G+ Q
Sbjct: 173 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL---SQKPDGINLQERVVTVSGEPEQ 229
Query: 357 IEIAQEMI 364
A E+I
Sbjct: 230 NRKAVELI 237
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 194 STDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEII 253
STD S +I VP N VG ++GK G T+ Q +GA+IQI++ + P R V I
Sbjct: 416 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 475
Query: 254 GTLSNIDKAEKLI 266
GT + A+ LI
Sbjct: 476 GTPAATQAAQYLI 488
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 14/88 (15%)
Query: 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQV-----LIPQHLPEGDGSKERI 347
G+ + VEI VP VG I+G+GG+T+ Q +GARIQ+ +P G++ R
Sbjct: 419 GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP-------GTRNRK 471
Query: 348 VRVTGDMRQIEIAQEMIKEVLS--QTVR 373
V +TG + AQ +I + ++ Q VR
Sbjct: 472 VTITGTPAATQAAQYLITQRITYEQGVR 499
Score = 40.4 bits (93), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 15/82 (18%)
Query: 174 EPSNVV-PQQVV--DNSKSDDPSS--------TDDSTMSR----KIEVPNNKVGVLIGKA 218
EP +++ PQ V D K PSS +D T SR KI VPN+ G++IGK
Sbjct: 131 EPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKG 190
Query: 219 GDTIRYLQYNSGAKIQITRDAD 240
G T++ + SGA +Q+++ D
Sbjct: 191 GATVKAIMEQSGAWVQLSQKPD 212
>sp|P51513|NOVA1_HUMAN RNA-binding protein Nova-1 OS=Homo sapiens GN=NOVA1 PE=1 SV=1
Length = 510
Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 87/191 (45%), Gaps = 32/191 (16%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITR---DADADPHAATRPVEIIGTLSNI 259
K+ +P+ G +IGK G TI LQ +GA I++++ D P R I GT+ +
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVEAL 112
Query: 260 DKAEKLINAVIAEA---------------DAGGSPSLVARGLATA-----------QASG 293
+ I I E +P + + L ++ +
Sbjct: 113 NAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTS 172
Query: 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGD 353
A QV+I VPN GLIIG+GG T+K + +SGA +Q+ P+G +ER+V V+G+
Sbjct: 173 RANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---SQKPDGINLQERVVTVSGE 229
Query: 354 MRQIEIAQEMI 364
Q A E+I
Sbjct: 230 PEQNRKAVELI 240
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 194 STDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEII 253
STD S +I VP N VG ++GK G T+ Q +GA+IQI++ + P R V I
Sbjct: 419 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 478
Query: 254 GTLSNIDKAEKLI 266
GT + A+ LI
Sbjct: 479 GTPAATQAAQYLI 491
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 14/88 (15%)
Query: 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQV-----LIPQHLPEGDGSKERI 347
G+ + VEI VP VG I+G+GG+T+ Q +GARIQ+ +P G++ R
Sbjct: 422 GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP-------GTRNRK 474
Query: 348 VRVTGDMRQIEIAQEMIKEVLS--QTVR 373
V +TG + AQ +I + ++ Q VR
Sbjct: 475 VTITGTPAATQAAQYLITQRITYEQGVR 502
Score = 39.7 bits (91), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 15/82 (18%)
Query: 174 EPSNVV-PQQVV--DNSKSDDPSS--------TDDSTMSR----KIEVPNNKVGVLIGKA 218
EP +++ PQ V D K PSS +D T SR KI VPN+ G++IGK
Sbjct: 134 EPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKG 193
Query: 219 GDTIRYLQYNSGAKIQITRDAD 240
G T++ + SGA +Q+++ D
Sbjct: 194 GATVKAVMEQSGAWVQLSQKPD 215
>sp|Q9Y2W6|TDRKH_HUMAN Tudor and KH domain-containing protein OS=Homo sapiens GN=TDRKH
PE=1 SV=2
Length = 561
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 27/168 (16%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
++ VP V ++IG+ G I+ L+ +GA+I D D + R + I G + KA
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARI----DVDTEDVGDERVLLISGFPVQVCKA 111
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQ 322
+ I+ ++ E +P +EQ + VP VG IIGRGGETI+ +
Sbjct: 112 KAAIHQILTE----NTP--------------VSEQ--LSVPQRSVGRIIGRGGETIRSIC 151
Query: 323 TRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370
SGA+I EG R+++++G +++ A+ +I E +S+
Sbjct: 152 KASGAKITC---DKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 196
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 297 QVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQ 356
++E++VP E V LIIGR G IK L+ ++GARI V D ER++ ++G Q
Sbjct: 54 EIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV------DTEDVGDERVLLISGFPVQ 107
Query: 357 IEIAQEMIKEVLSQ 370
+ A+ I ++L++
Sbjct: 108 VCKAKAAIHQILTE 121
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 180 PQQVVDNSKSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDA 239
P QV + T+++ +S ++ VP VG +IG+ G+TIR + SGAKI +++
Sbjct: 105 PVQVCKAKAAIHQILTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKES 164
Query: 240 DADPHAATRPVEIIGTLSNIDKAEKLINAVIAE 272
+ +R ++I GT + A+ LI ++E
Sbjct: 165 EG-TLLLSRLIKISGTQKEVAAAKHLILEKVSE 196
>sp|Q80VL1|TDRKH_MOUSE Tudor and KH domain-containing protein OS=Mus musculus GN=Tdrkh
PE=1 SV=1
Length = 560
Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 27/168 (16%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
++ VP V ++IG+ G I+ L+ +GA+I D D + R + I G + KA
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARI----DVDTEDVGDERVLLISGFPVQVCKA 111
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQ 322
+ I+ ++ E +P EQ + VP VG IIGRGGETI+ +
Sbjct: 112 KAAIHQILTE----NTPVF--------------EQ--LSVPQRSVGRIIGRGGETIRSIC 151
Query: 323 TRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370
SGA+I EG R+++++G +++ A+ +I E +S+
Sbjct: 152 KASGAKITC---DKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 196
Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Query: 297 QVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQ 356
++E++VP E V LIIGR G IK L+ ++GARI V D ER++ ++G Q
Sbjct: 54 EIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDV------DTEDVGDERVLLISGFPVQ 107
Query: 357 IEIAQEMIKEVLSQ 370
+ A+ I ++L++
Sbjct: 108 VCKAKAAIHQILTE 121
Score = 41.2 bits (95), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 180 PQQVVDNSKSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDA 239
P QV + T+++ + ++ VP VG +IG+ G+TIR + SGAKI +++
Sbjct: 105 PVQVCKAKAAIHQILTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKES 164
Query: 240 DADPHAATRPVEIIGTLSNIDKAEKLINAVIAE 272
+ +R ++I GT + A+ LI ++E
Sbjct: 165 EG-TLLLSRLIKISGTQKEVAAAKHLILEKVSE 196
>sp|O00425|IF2B3_HUMAN Insulin-like growth factor 2 mRNA-binding protein 3 OS=Homo sapiens
GN=IGF2BP3 PE=1 SV=2
Length = 579
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 83/167 (49%), Gaps = 19/167 (11%)
Query: 206 VPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKL 265
+P VG +IGK G I+ L +GA I+I A+A P A R V I G KA+
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKIA-PAEA-PDAKVRMVIITGPPEAQFKAQGR 469
Query: 266 INAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRS 325
I I E + SP + I+VP+ G +IG+GG+T+ LQ S
Sbjct: 470 IYGKIKEENFV-SPK-----------EEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLS 517
Query: 326 GARIQVLIPQ-HLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 371
A +V++P+ P D + + +V++TG ++AQ I+E+L+Q
Sbjct: 518 SA--EVVVPRDQTP--DENDQVVVKITGHFYACQVAQRKIQEILTQV 560
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 21/171 (12%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
++ VP VG +IGK G TIR + + +KI + R +A AA + + I+ T
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAG--AAEKSITILST------- 249
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEKVGLIIGRGGETIKG 320
E + S++ AQ E++ +K+ N VG +IG+ G +K
Sbjct: 250 --------PEGTSAACKSILEIMHKEAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKK 301
Query: 321 LQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 371
++ + +I + Q L + ER + V G++ A+E I + + ++
Sbjct: 302 IEQDTDTKITISPLQELTLYN--PERTITVKGNVETCAKAEEEIMKKIRES 350
>sp|Q9CPN8|IF2B3_MOUSE Insulin-like growth factor 2 mRNA-binding protein 3 OS=Mus musculus
GN=Igf2bp3 PE=1 SV=1
Length = 579
Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 84/167 (50%), Gaps = 19/167 (11%)
Query: 206 VPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKL 265
+P VG +IGK G I+ L +GA I+I A+A P A R V I G KA+
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKIA-PAEA-PDAKVRMVIITGPPEAQFKAQGR 469
Query: 266 INAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRS 325
I I E + SP + I+VP+ G +IG+GG+T+ LQ+ S
Sbjct: 470 IYGKIKEENFV-SPK-----------EEVKLEAHIRVPSFAAGRVIGKGGKTVNELQSLS 517
Query: 326 GARIQVLIPQ-HLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 371
A +V++P+ P D + + +V++TG ++AQ I+E+L+Q
Sbjct: 518 SA--EVVVPRDQTP--DENDQVVVKITGHFYACQVAQRKIQEILTQV 560
Score = 42.0 bits (97), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 21/171 (12%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
++ VP VG +IGK G TIR + + +KI + R + AA + + I+ T
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTG--AAEKSITILST------- 249
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEKVGLIIGRGGETIKG 320
E + S++ AQ E++ +K+ N VG +IG+ G +K
Sbjct: 250 --------PEGTSAACKSILEIMHKEAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKK 301
Query: 321 LQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 371
++ + +I + Q L + ER + V G + A+E I + + ++
Sbjct: 302 IEQDTDTKITISPLQELTLYN--PERTITVKGSVETCAKAEEEIMKKIRES 350
>sp|Q9PW80|IF2B3_DANRE Insulin-like growth factor 2 mRNA-binding protein 3 OS=Danio rerio
GN=igf2bp3 PE=1 SV=1
Length = 582
Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/187 (28%), Positives = 82/187 (43%), Gaps = 41/187 (21%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
KI NN VG LIGK G ++ ++ ++ KI I+ D + R + + GTL KA
Sbjct: 279 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGTLDACAKA 338
Query: 263 EKLINAVIAE------------------------------ADAGGSPSLVA-------RG 285
E+ I + E A G SPS+V+ G
Sbjct: 339 EEEIMKKVRESYENDVAAMHLQSNLIPGLNLNALGLFPGAASGGISPSVVSGPPPGAQAG 398
Query: 286 LATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKE 345
+ A +E V + +P VG IIG+ G+ IK L +GA I++ P +G +K+
Sbjct: 399 YQSFGAQMESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIA-P---ADGIDAKQ 454
Query: 346 RIVRVTG 352
R+V ++G
Sbjct: 455 RMVIISG 461
Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 84/172 (48%), Gaps = 21/172 (12%)
Query: 204 IEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADAD-PHAATRPVEIIGTLSNIDKA 262
+ +P VG +IGK G I+ L +GA I+I A AD A R V I G KA
Sbjct: 413 LFIPALAVGAIIGKQGQHIKQLSRFAGASIKI---APADGIDAKQRMVIISGPPEAQFKA 469
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQ 322
+ I + E + G V + IKVP+ G +IG+GG+T+ LQ
Sbjct: 470 QGRIFGKLKEENFFGPKEEVKL------------EAHIKVPSFAAGRVIGKGGKTVNELQ 517
Query: 323 TRSGARIQVLIPQ-HLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTVR 373
+ A +V++P+ P D + + +V++TG ++AQ I+E++SQ R
Sbjct: 518 NLTSA--EVVVPRDQTP--DENDQVVVKITGHFYASQLAQRKIQEIISQVRR 565
Score = 40.0 bits (92), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 73/164 (44%), Gaps = 21/164 (12%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
++ VP VG +IGK G TIR + + +KI I R +A AA +P+ + T A
Sbjct: 198 RLLVPTQFVGAIIGKEGATIRNITKQTHSKIDIHRKENAG--AAEKPITVHSTPEGCSSA 255
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEKVGLIIGRGGETIKG 320
+ I ++ + A + E++ +K+ N VG +IG+ G +K
Sbjct: 256 CRNIMEIMQK---------------EAIDTKITEEIPLKILAHNNFVGRLIGKEGRNLKK 300
Query: 321 LQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMI 364
++ + +I + Q L + ER + V G + A+E I
Sbjct: 301 IEQDTDTKITISPLQDLTLYN--PERTITVKGTLDACAKAEEEI 342
>sp|O73932|IF23A_XENLA Insulin-like growth factor 2 mRNA-binding protein 3-A OS=Xenopus
laevis GN=igf2bp3-a PE=1 SV=1
Length = 594
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/166 (31%), Positives = 82/166 (49%), Gaps = 21/166 (12%)
Query: 206 VPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADAD-PHAATRPVEIIGTLSNIDKAEK 264
+P VG +IGK G I+ L +GA I+I A A+ P A R V I G KA+
Sbjct: 425 IPALAVGAIIGKQGQHIKQLSRFAGASIKI---APAEGPDAKLRMVIITGPPEAQFKAQG 481
Query: 265 LINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324
I + E + G V + IKVP+ G +IG+GG+T+ LQ
Sbjct: 482 RIYGKLKEENFFGPKEEVKL------------ETHIKVPSYAAGRVIGKGGKTVNELQNL 529
Query: 325 SGARIQVLIPQ-HLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLS 369
+ A +V++P+ P D + E +V++TG ++AQ I+E+L+
Sbjct: 530 TSA--EVVVPRDQTP--DENDEVVVKITGHFYASQLAQRKIQEILA 571
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
++ VP VG +IGK G TIR + + +KI I R +A AA +P+ I T A
Sbjct: 209 RMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAG--AAEKPITIHSTPEGCSAA 266
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEKVGLIIGRGGETIKG 320
K+I ++ + AQ + E++ +K+ N VG +IG+ G +K
Sbjct: 267 CKIIMEIMQKE---------------AQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKK 311
Query: 321 LQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 371
++ + +I + Q L + ER + V G + A+E I + + ++
Sbjct: 312 IEQDTDTKITISPLQDLTLYN--PERTITVKGSIEPCAKAEEEIMKKIRES 360
>sp|Q5SF07|IF2B2_MOUSE Insulin-like growth factor 2 mRNA-binding protein 2 OS=Mus musculus
GN=Igf2bp2 PE=1 SV=1
Length = 592
Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 97/221 (43%), Gaps = 38/221 (17%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
+I VP VG +IGK G TI+ + + +++ I R ++ AA +PV I T +A
Sbjct: 190 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSG--AAEKPVTIHATPEGTSEA 247
Query: 263 EKLINAVI-AEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEKVGLIIGRGGETIK 319
++I ++ EAD + AE+V +K+ N VG +IG+ G +K
Sbjct: 248 CRMILEIMQKEADE----------------TKLAEEVPLKILAHNGFVGRLIGKEGRNLK 291
Query: 320 GLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTVRPSTLSG 379
++ +G +I + Q L + ER + V G + A+ I + L + L+
Sbjct: 292 KIEHETGTKITISSLQDL--SIYNPERTITVRGTIEACANAEIEIMKKLREAFENDMLA- 348
Query: 380 GFNQQA-------------YRPRVPTGPPQWGPRGSHPSQP 407
NQQA + + PP GPRG PS P
Sbjct: 349 -VNQQANLIPGLNLSALGIFSTGLSVLPPPAGPRGVPPSPP 388
Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 21/168 (12%)
Query: 206 VPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADAD-PHAATRPVEIIGTLSNIDKAEK 264
+P VG +IGK G I+ L +GA I+I A A+ P + R V I G KA+
Sbjct: 427 IPTQAVGAIIGKKGAHIKQLARFAGASIKI---APAEGPDVSERMVIITGPPEAQFKAQG 483
Query: 265 LINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324
I + E + V + I+VP+ G +IG+GG+T+ LQ
Sbjct: 484 RIFGKLKEENFFNPKEEVKL------------EAHIRVPSSTAGRVIGKGGKTVNELQNL 531
Query: 325 SGARIQVLIPQ-HLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 371
+ A +V++P+ P D ++E IVR+ G + AQ I+E++ Q
Sbjct: 532 TSA--EVIVPRDQTP--DENEEVIVRIIGHFFASQTAQRKIREIVQQV 575
Score = 34.3 bits (77), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 296 EQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTG 352
E V + +P + VG IIG+ G IK L +GA I++ P EG ER+V +TG
Sbjct: 421 ETVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIA-P---AEGPDVSERMVIITG 473
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 298 VEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQI 357
+ I VP + VG IIG+ G TIK + ++ +R+ + H E G+ E+ V +
Sbjct: 189 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI----HRKENSGAAEKPVTIHATPEGT 244
Query: 358 EIAQEMIKEVLSQ 370
A MI E++ +
Sbjct: 245 SEACRMILEIMQK 257
Score = 33.1 bits (74), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGT 255
++ + I VP++ G +IGK G T+ LQ + A++ + RD D + V IIG
Sbjct: 499 EEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEV-IVRIIGH 557
Query: 256 LSNIDKAEKLINAVI 270
A++ I ++
Sbjct: 558 FFASQTAQRKIREIV 572
>sp|O57526|IF23B_XENLA Insulin-like growth factor 2 mRNA-binding protein 3-B OS=Xenopus
laevis GN=igf2bp3-b PE=1 SV=1
Length = 593
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 21/166 (12%)
Query: 206 VPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADAD-PHAATRPVEIIGTLSNIDKAEK 264
+P VG +IGK G I+ L +GA I+I A A+ P A R V I G KA+
Sbjct: 424 IPALAVGAIIGKQGQHIKQLSRFAGASIKI---APAEGPDAKLRMVIITGPPEAQFKAQG 480
Query: 265 LINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324
I + E + G V + IKVP+ G +IG+GG+T+ LQ
Sbjct: 481 RIYGKLKEENFFGPKEEVKL------------EAHIKVPSYAAGRVIGKGGKTVNELQNL 528
Query: 325 SGARIQVLIPQ-HLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLS 369
+ A +V++P+ P D + + +V++TG ++AQ I+E+L+
Sbjct: 529 TSA--EVVVPRDQTP--DENDQVVVKITGHFYASQLAQRKIQEILA 570
Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
++ VP VG +IGK G TIR + + +KI I R +A AA +P+ I T A
Sbjct: 208 RMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAG--AAEKPITIHSTPEGCSAA 265
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEKVGLIIGRGGETIKG 320
K+I ++ + AQ + E++ +K+ N VG +IG+ G +K
Sbjct: 266 CKIIMEIMQKE---------------AQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKK 310
Query: 321 LQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 371
++ + +I + Q L + ER + V G + A+E + + + ++
Sbjct: 311 IEQDTDTKITISPLQDLTLYN--PERTITVKGSIETCAKAEEEVMKKIRES 359
>sp|Q08CK7|IF2B1_DANRE Insulin-like growth factor 2 mRNA-binding protein 1 OS=Danio rerio
GN=igf2bp1 PE=1 SV=1
Length = 598
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 38/201 (18%)
Query: 184 VDNSKSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADP 243
+ N ++ D + D+ + K+ NN VG LIGK G ++ ++ ++ KI I+ D
Sbjct: 266 IMNQEAKDTKTADEVPL--KVLAHNNFVGRLIGKEGRNLKKVEQDTDTKITISPLQDLTL 323
Query: 244 HAATRPVEIIGTLSNIDKAEKLINAVIAEA---DAGGS---------PSLVARGLATAQA 291
+ R + + G++ AE+ I + EA D +L A GL +
Sbjct: 324 YNPERTITVKGSIEACCLAEQEIMKKVREAYDNDIAAMNQQTHLIPGLNLGAIGLFPPSS 383
Query: 292 S------------------GAAEQ--VEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQV 331
+ GA+EQ V + +P + VG +IG+ G+ IK L +GA I++
Sbjct: 384 AMPPPALGNSVPGPPYGPMGASEQETVHVYIPAQAVGALIGKKGQHIKQLSRFAGASIKI 443
Query: 332 LIPQHLPEGDGSKERIVRVTG 352
P P+ SK R+V VTG
Sbjct: 444 A-PAEAPD---SKMRMVIVTG 460
Score = 49.7 bits (117), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 22/182 (12%)
Query: 189 SDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATR 248
S PS + + ++ VP VG +IGK G TIR + + +KI + R +A AA +
Sbjct: 188 SGIPSKHQHADIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAG--AAEK 245
Query: 249 PVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEK 306
P+ I T A ++I ++ + A+ + A++V +KV N
Sbjct: 246 PISIHSTPEGCSAACRMILEIMNQE---------------AKDTKTADEVPLKVLAHNNF 290
Query: 307 VGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIA-QEMIK 365
VG +IG+ G +K ++ + +I + Q L + ER + V G + +A QE++K
Sbjct: 291 VGRLIGKEGRNLKKVEQDTDTKITISPLQDLTLYN--PERTITVKGSIEACCLAEQEIMK 348
Query: 366 EV 367
+V
Sbjct: 349 KV 350
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 78/166 (46%), Gaps = 17/166 (10%)
Query: 206 VPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKL 265
+P VG LIGK G I+ L +GA I+I A+A P + R V + G KA+
Sbjct: 414 IPAQAVGALIGKKGQHIKQLSRFAGASIKIA-PAEA-PDSKMRMVIVTGPPEAQFKAQGR 471
Query: 266 INAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRS 325
I + E + G V + IKV G +IG+GG+T+ LQ +
Sbjct: 472 IYGKLKEENFFGPKEEVKL------------ETHIKVAAAAAGRVIGKGGKTVNELQNLT 519
Query: 326 GARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 371
A +V++P+ D + IV++ G ++AQ I+++L+Q
Sbjct: 520 AA--EVVVPRE-QTPDEHDQVIVKIIGHFYASQLAQRKIRDILTQV 562
>sp|Q5ZLP8|IF2B3_CHICK Insulin-like growth factor 2 mRNA-binding protein 3 OS=Gallus
gallus GN=IGF2BP3 PE=2 SV=1
Length = 584
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 21/166 (12%)
Query: 206 VPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADAD-PHAATRPVEIIGTLSNIDKAEK 264
+P VG +IGK G I+ L +GA I+I A A+ P A R V I G KA+
Sbjct: 416 IPALAVGAIIGKQGQHIKQLSRFAGASIKI---APAEGPDAKLRMVIITGPPEAQFKAQG 472
Query: 265 LINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324
I + E + G V + IKVP+ G +IG+GG+T+ LQ
Sbjct: 473 RIYGKLKEENFFGPKEEVKL------------EAHIKVPSYAAGRVIGKGGKTVNELQNL 520
Query: 325 SGARIQVLIPQ-HLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLS 369
+ A +V++P+ P D + + +V++TG ++AQ I+E+L+
Sbjct: 521 TSA--EVVVPRDQTP--DENDQVVVKITGHFYACQLAQRKIQEILA 562
Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 79/171 (46%), Gaps = 21/171 (12%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
++ VP VG +IGK G TIR + + +KI I R +A AA +P+ I T A
Sbjct: 200 RMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAG--AAEKPITIHSTPEGCSTA 257
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEKVGLIIGRGGETIKG 320
K+I ++ + AQ + E++ +K+ N VG +IG+ G +K
Sbjct: 258 CKIIMEIMQKE---------------AQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKK 302
Query: 321 LQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 371
++ + +I + Q L + ER + V G + A+E I + + ++
Sbjct: 303 IEQDTDTKITISPLQDLTLYN--PERTITVKGSIETCAKAEEEIMKKIRES 351
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 40/186 (21%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
KI NN VG LIGK G ++ ++ ++ KI I+ D + R + + G++ KA
Sbjct: 281 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIETCAKA 340
Query: 263 EKLINAVIAEA---DAGGS---------PSLVARGLATAQASGA---------------- 294
E+ I I E+ D +L A GL +SG
Sbjct: 341 EEEIMKKIRESYENDIAAMNLQAHLIPGLNLNALGLFPPSSSGIPPPAVSVASAAAAASY 400
Query: 295 --------AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKER 346
+E V + +P VG IIG+ G+ IK L +GA I++ P EG +K R
Sbjct: 401 PPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKI-AP---AEGPDAKLR 456
Query: 347 IVRVTG 352
+V +TG
Sbjct: 457 MVIITG 462
>sp|Q9Y6M1|IF2B2_HUMAN Insulin-like growth factor 2 mRNA-binding protein 2 OS=Homo sapiens
GN=IGF2BP2 PE=1 SV=2
Length = 599
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 21/164 (12%)
Query: 206 VPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADAD-PHAATRPVEIIGTLSNIDKAEK 264
+P VG +IGK G I+ L +GA I+I A A+ P + R V I G KA+
Sbjct: 434 IPTQAVGAIIGKKGAHIKQLARFAGASIKI---APAEGPDVSERMVIITGPPEAQFKAQG 490
Query: 265 LINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324
I + E + V + I+VP+ G +IG+GG+T+ LQ
Sbjct: 491 RIFGKLKEENFFNPKEEVKL------------EAHIRVPSSTAGRVIGKGGKTVNELQNL 538
Query: 325 SGARIQVLIPQ-HLPEGDGSKERIVRVTGDMRQIEIAQEMIKEV 367
+ A +V++P+ P D ++E IVR+ G + AQ I+E+
Sbjct: 539 TSA--EVIVPRDQTP--DENEEVIVRIIGHFFASQTAQRKIREI 578
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 86/186 (46%), Gaps = 25/186 (13%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
+I VP VG +IGK G TI+ + + +++ I R ++ AA +PV I T +A
Sbjct: 197 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSG--AAEKPVTIHATPEGTSEA 254
Query: 263 EKLINAVI-AEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEKVGLIIGRGGETIK 319
++I ++ EAD + AE++ +K+ N VG +IG+ G +K
Sbjct: 255 CRMILEIMQKEAD----------------ETKLAEEIPLKILAHNGLVGRLIGKEGRNLK 298
Query: 320 GLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTVRPSTLSG 379
++ +G +I + Q L + ER + V G + A+ I + L + L+
Sbjct: 299 KIEHETGTKITISSLQDL--SIYNPERTITVKGTVEACASAEIEIMKKLREAFENDMLA- 355
Query: 380 GFNQQA 385
NQQA
Sbjct: 356 -VNQQA 360
Score = 39.7 bits (91), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 81/207 (39%), Gaps = 61/207 (29%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTL-----S 257
KI N VG LIGK G ++ +++ +G KI I+ D + R + + GT+ +
Sbjct: 278 KILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACASA 337
Query: 258 NIDKAEKL-------INAVIAEADAGGSPSLVARGLATAQASGAA--------------- 295
I+ +KL + AV +A+ +L A G+ + S +
Sbjct: 338 EIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLSPPAGPRGAPPAAPYH 397
Query: 296 ------------------------------EQVEIKVPNEKVGLIIGRGGETIKGLQTRS 325
E V + +P + VG IIG+ G IK L +
Sbjct: 398 PFTTHSGYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFA 457
Query: 326 GARIQVLIPQHLPEGDGSKERIVRVTG 352
GA I++ P EG ER+V +TG
Sbjct: 458 GASIKIA-P---AEGPDVSERMVIITG 480
Score = 34.7 bits (78), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 288 TAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERI 347
T+QA + I VP + VG IIG+ G TIK + ++ +R+ + H E G+ E+
Sbjct: 186 TSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI----HRKENSGAAEKP 241
Query: 348 VRVTGDMRQIEIAQEMIKEVLSQTVRPSTLS 378
V + A MI E++ + + L+
Sbjct: 242 VTIHATPEGTSEACRMILEIMQKEADETKLA 272
>sp|Q15637|SF01_HUMAN Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4
Length = 639
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 155 ETKEVTVKEEETVKEEESVEPSNVVPQQVVDNSKSDDPSSTD--DSTMSRKIEVPN---- 208
E K + +E T K+ E E N++ + V N P+ + +S K+ +P
Sbjct: 90 EGKRLNTREFRTRKKLEE-ERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYP 148
Query: 209 --NKVGVLIGKAGDTIRYLQYNSGAKIQI 235
N VG+LIG G+T++ ++ AKI I
Sbjct: 149 EINFVGLLIGPRGNTLKNIEKECNAKIMI 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.127 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 354,826,771
Number of Sequences: 539616
Number of extensions: 18663472
Number of successful extensions: 83614
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 4104
Number of HSP's that attempted gapping in prelim test: 56310
Number of HSP's gapped (non-prelim): 17864
length of query: 785
length of database: 191,569,459
effective HSP length: 126
effective length of query: 659
effective length of database: 123,577,843
effective search space: 81437798537
effective search space used: 81437798537
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 65 (29.6 bits)