Query 003933
Match_columns 785
No_of_seqs 391 out of 2034
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 08:43:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003933.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003933hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 99.9 2.9E-27 9.9E-32 234.9 11.9 172 197-371 3-176 (178)
2 3krm_A Insulin-like growth fac 99.9 3.3E-26 1.1E-30 224.1 15.9 157 200-373 3-159 (163)
3 1j4w_A FUSE binding protein; s 99.9 2.5E-26 8.4E-31 227.6 13.3 165 199-368 2-174 (174)
4 2jvz_A KH type-splicing, FAR u 99.9 3.3E-26 1.1E-30 223.7 13.9 160 200-371 2-161 (164)
5 2jzx_A Poly(RC)-binding protei 99.9 5.8E-26 2E-30 221.6 12.7 158 197-370 2-159 (160)
6 2qnd_A FMR1 protein; KH domain 99.8 1.8E-19 6.3E-24 173.7 11.4 137 199-370 3-142 (144)
7 2e3u_A PH-DIM2P, hypothetical 99.8 1.3E-18 4.4E-23 178.6 9.5 146 196-370 30-191 (219)
8 3n89_A Defective in GERM LINE 99.7 3.7E-17 1.3E-21 178.8 13.8 172 196-368 26-259 (376)
9 1tua_A Hypothetical protein AP 99.7 7.4E-17 2.5E-21 162.0 11.1 141 201-370 5-160 (191)
10 1dtj_A RNA-binding neurooncolo 99.5 3.2E-14 1.1E-18 122.1 6.6 75 199-273 2-76 (76)
11 2axy_A Poly(RC)-binding protei 99.5 4.1E-14 1.4E-18 120.9 6.9 69 295-370 4-72 (73)
12 2hh2_A KH-type splicing regula 99.5 6.3E-14 2.2E-18 128.5 8.0 74 297-372 8-81 (107)
13 1zzk_A Heterogeneous nuclear r 99.5 1.2E-13 4.2E-18 120.5 8.9 72 294-370 5-76 (82)
14 1dtj_A RNA-binding neurooncolo 99.5 9.2E-14 3.1E-18 119.3 7.9 73 296-370 3-75 (76)
15 1wvn_A Poly(RC)-binding protei 99.5 9.7E-14 3.3E-18 121.1 7.7 73 294-371 4-76 (82)
16 2axy_A Poly(RC)-binding protei 99.4 8.5E-14 2.9E-18 119.0 5.8 70 198-272 3-72 (73)
17 1x4n_A FAR upstream element bi 99.4 1.3E-13 4.5E-18 123.0 7.1 74 294-372 13-86 (92)
18 2opv_A KHSRP protein; KH domai 99.4 2.7E-13 9.3E-18 119.1 9.0 73 295-370 13-85 (85)
19 2p2r_A Poly(RC)-binding protei 99.4 1.3E-13 4.5E-18 118.5 6.7 71 295-370 4-74 (76)
20 1ec6_A RNA-binding protein NOV 99.4 1E-13 3.6E-18 122.2 6.2 76 199-274 2-77 (87)
21 1zzk_A Heterogeneous nuclear r 99.4 3.2E-13 1.1E-17 117.9 8.8 74 197-273 4-77 (82)
22 2hh3_A KH-type splicing regula 99.4 1.8E-13 6.3E-18 125.3 7.5 73 296-373 11-83 (106)
23 1x4m_A FAR upstream element bi 99.4 1.5E-13 5.3E-18 123.0 6.2 76 294-372 13-88 (94)
24 2hh2_A KH-type splicing regula 99.4 1.6E-13 5.4E-18 125.9 6.2 74 201-274 8-81 (107)
25 1j5k_A Heterogeneous nuclear r 99.4 1.7E-13 5.7E-18 121.5 5.9 72 294-370 12-83 (89)
26 1ec6_A RNA-binding protein NOV 99.4 2E-13 7E-18 120.4 6.4 74 296-371 3-76 (87)
27 2p2r_A Poly(RC)-binding protei 99.4 1.7E-13 5.9E-18 117.8 5.6 73 198-273 3-75 (76)
28 1wvn_A Poly(RC)-binding protei 99.4 3E-13 1E-17 118.0 6.5 73 198-273 4-76 (82)
29 1x4n_A FAR upstream element bi 99.4 3.5E-13 1.2E-17 120.2 6.9 75 197-274 12-86 (92)
30 2dgr_A Ring finger and KH doma 99.4 1.6E-13 5.6E-18 120.2 4.6 69 294-370 8-76 (83)
31 2opv_A KHSRP protein; KH domai 99.4 9.5E-13 3.2E-17 115.6 9.0 75 197-272 11-85 (85)
32 2hh3_A KH-type splicing regula 99.4 4.5E-13 1.5E-17 122.7 7.1 74 199-275 10-83 (106)
33 1j5k_A Heterogeneous nuclear r 99.4 3.4E-13 1.2E-17 119.5 6.0 75 196-273 10-84 (89)
34 1we8_A Tudor and KH domain con 99.4 6.3E-13 2.1E-17 121.2 7.7 75 294-371 13-87 (104)
35 1x4m_A FAR upstream element bi 99.4 4.2E-13 1.4E-17 120.2 5.8 78 196-274 11-88 (94)
36 1we8_A Tudor and KH domain con 99.3 1.9E-12 6.4E-17 118.0 9.1 77 196-273 11-87 (104)
37 2anr_A Neuro-oncological ventr 99.3 8.5E-13 2.9E-17 130.7 5.8 110 163-273 55-176 (178)
38 2dgr_A Ring finger and KH doma 99.3 5.9E-13 2E-17 116.7 3.7 71 197-273 7-77 (83)
39 1j4w_A FUSE binding protein; s 99.3 1.1E-12 3.8E-17 129.5 6.0 108 163-270 49-174 (174)
40 1vig_A Vigilin; RNA-binding pr 99.3 1.7E-12 5.8E-17 110.3 6.3 67 295-368 4-70 (71)
41 2cte_A Vigilin; K homology typ 99.3 2.2E-12 7.4E-17 115.6 7.1 74 294-374 15-88 (94)
42 3krm_A Insulin-like growth fac 99.3 2.3E-12 7.8E-17 125.7 7.8 108 162-273 49-157 (163)
43 2jvz_A KH type-splicing, FAR u 99.3 2.3E-12 7.9E-17 125.5 7.5 109 163-274 50-162 (164)
44 2ctl_A Vigilin; K homology typ 99.3 5.2E-12 1.8E-16 113.8 8.6 75 294-372 15-89 (97)
45 2jzx_A Poly(RC)-binding protei 99.3 1.3E-12 4.5E-17 127.0 4.8 109 162-272 48-159 (160)
46 2ctm_A Vigilin; K homology typ 99.3 6.9E-12 2.3E-16 112.6 8.5 75 293-373 14-88 (95)
47 2ctl_A Vigilin; K homology typ 99.3 7.5E-12 2.6E-16 112.8 8.1 75 198-274 15-89 (97)
48 2cte_A Vigilin; K homology typ 99.3 4.8E-12 1.7E-16 113.3 6.3 73 197-274 14-86 (94)
49 2ctk_A Vigilin; K homology typ 99.2 5.4E-12 1.8E-16 115.1 5.1 83 172-273 3-85 (104)
50 2ctk_A Vigilin; K homology typ 99.2 1.2E-11 4.1E-16 112.9 6.4 70 295-371 16-85 (104)
51 1vig_A Vigilin; RNA-binding pr 99.2 8.9E-12 3E-16 105.9 5.0 68 198-270 3-70 (71)
52 2ctm_A Vigilin; K homology typ 99.2 3.5E-11 1.2E-15 108.0 8.7 75 196-274 13-87 (95)
53 2ctf_A Vigilin; K homology typ 99.2 1.9E-11 6.5E-16 111.1 6.7 90 165-274 4-94 (102)
54 2ctf_A Vigilin; K homology typ 99.2 9.9E-13 3.4E-17 119.6 -2.9 90 251-372 4-94 (102)
55 2ctj_A Vigilin; K homology typ 99.1 8.8E-11 3E-15 105.4 6.4 73 293-372 14-87 (95)
56 2ctj_A Vigilin; K homology typ 99.0 4.9E-10 1.7E-14 100.6 6.1 74 196-274 13-87 (95)
57 2cpq_A FragIle X mental retard 98.9 5.5E-10 1.9E-14 99.3 3.1 72 293-374 12-85 (91)
58 2yqr_A KIAA0907 protein; struc 98.9 4.6E-09 1.6E-13 97.9 8.4 76 295-371 11-100 (119)
59 1k1g_A SF1-BO isoform; splicin 98.8 5.7E-09 2E-13 98.9 8.8 77 294-371 5-100 (131)
60 2qnd_A FMR1 protein; KH domain 98.8 3E-09 1E-13 102.4 6.6 72 202-273 69-143 (144)
61 1k1g_A SF1-BO isoform; splicin 98.8 4E-09 1.4E-13 100.0 7.2 76 198-273 5-100 (131)
62 2yqr_A KIAA0907 protein; struc 98.8 1.7E-08 5.9E-13 94.0 8.7 76 198-273 10-100 (119)
63 2cpq_A FragIle X mental retard 98.7 6.8E-09 2.3E-13 92.2 3.5 66 196-269 11-78 (91)
64 3n89_A Defective in GERM LINE 98.6 2E-08 6.8E-13 110.1 6.2 74 293-367 27-103 (376)
65 2e3u_A PH-DIM2P, hypothetical 98.5 8.1E-08 2.8E-12 98.5 5.1 65 295-369 33-102 (219)
66 2bl5_A MGC83862 protein, quaki 98.4 1.3E-07 4.6E-12 90.3 5.3 73 200-272 2-101 (140)
67 2bl5_A MGC83862 protein, quaki 98.4 2.5E-07 8.7E-12 88.4 5.9 73 297-370 3-101 (140)
68 3u1k_A Polyribonucleotide nucl 98.3 6E-07 2E-11 104.9 7.7 63 295-368 566-629 (630)
69 1tua_A Hypothetical protein AP 98.1 2.4E-06 8.2E-11 85.8 5.8 64 297-370 5-73 (191)
70 3u1k_A Polyribonucleotide nucl 98.1 8.1E-07 2.8E-11 103.8 2.7 67 196-271 563-630 (630)
71 2cxc_A NUSA; transcription ter 97.9 5.7E-06 2E-10 79.4 4.1 103 200-331 36-138 (144)
72 4aid_A Polyribonucleotide nucl 97.9 3.5E-06 1.2E-10 99.6 2.0 70 196-274 566-636 (726)
73 3v69_A Protein filia; RNA-bind 97.9 2.4E-05 8.4E-10 73.7 7.3 69 296-370 56-124 (140)
74 4aid_A Polyribonucleotide nucl 97.8 9.3E-06 3.2E-10 96.0 4.7 67 295-372 569-636 (726)
75 3v69_A Protein filia; RNA-bind 97.4 0.0002 6.8E-09 67.6 6.6 70 199-272 55-124 (140)
76 2asb_A Transcription elongatio 97.0 0.00088 3E-08 69.6 6.8 95 209-333 126-221 (251)
77 1k0r_A NUSA; two component arr 96.9 0.001 3.5E-08 72.7 6.6 95 209-333 249-344 (366)
78 3cdi_A Polynucleotide phosphor 96.9 0.00037 1.3E-08 82.7 3.0 66 295-371 559-625 (723)
79 3cdi_A Polynucleotide phosphor 96.6 0.00036 1.2E-08 82.8 0.1 69 196-273 556-625 (723)
80 1e3p_A Guanosine pentaphosphat 96.5 0.00029 9.9E-09 83.9 -1.8 62 296-368 598-660 (757)
81 1hh2_P NUSA, N utilization sub 96.3 0.0053 1.8E-07 66.7 7.0 94 209-332 245-339 (344)
82 1e3p_A Guanosine pentaphosphat 96.0 0.00034 1.2E-08 83.3 -4.6 66 196-270 594-660 (757)
83 2cxc_A NUSA; transcription ter 88.3 0.26 8.8E-06 47.2 3.1 37 296-332 36-72 (144)
84 4hhu_A OR280; engineered prote 84.3 15 0.00052 33.7 12.4 47 220-273 22-68 (170)
85 1wh9_A 40S ribosomal protein S 84.0 0.48 1.7E-05 41.9 2.4 29 295-323 34-62 (92)
86 2pt7_G HP1451, hypothetical pr 83.1 0.39 1.3E-05 46.3 1.5 32 295-326 32-63 (152)
87 3gku_A Probable RNA-binding pr 81.6 0.83 2.8E-05 46.8 3.4 64 259-330 63-126 (225)
88 2pt7_G HP1451, hypothetical pr 80.5 0.27 9.4E-06 47.4 -0.6 92 174-272 5-98 (152)
89 2xzm_C KH domain containing pr 78.6 1.4 4.7E-05 45.6 3.8 59 257-324 17-75 (243)
90 3iz6_B 40S ribosomal protein S 77.7 1.2 4.2E-05 45.6 3.1 58 257-323 14-71 (227)
91 2asb_A Transcription elongatio 76.3 1.7 5.8E-05 45.2 3.8 40 200-239 184-223 (251)
92 3u5c_D RP13, YS3, 40S ribosoma 75.7 1.6 5.5E-05 45.0 3.4 30 295-324 43-72 (240)
93 3ezj_A General secretion pathw 66.9 28 0.00097 35.2 10.4 58 200-269 108-166 (241)
94 1k0r_A NUSA; two component arr 64.8 3.5 0.00012 45.0 3.3 41 199-239 306-346 (366)
95 3j20_C 30S ribosomal protein S 64.5 3.2 0.00011 42.0 2.7 32 295-326 39-74 (210)
96 3af5_A Putative uncharacterize 64.3 7.6 0.00026 45.4 6.2 94 213-332 50-143 (651)
97 1hh2_P NUSA, N utilization sub 63.3 4.2 0.00014 44.1 3.5 41 198-238 301-341 (344)
98 2zkq_c 40S ribosomal protein S 62.0 2.5 8.6E-05 43.6 1.4 30 295-324 43-72 (243)
99 3gku_A Probable RNA-binding pr 60.7 1.5 5.3E-05 44.8 -0.5 61 173-233 63-125 (225)
100 4e9j_A General secretion pathw 59.8 46 0.0016 33.8 10.5 96 230-367 139-240 (246)
101 2xr1_A Cleavage and polyadenyl 58.4 7.5 0.00026 45.4 4.8 93 214-332 46-138 (640)
102 3i1m_C 30S ribosomal protein S 56.7 4 0.00014 41.9 1.8 37 295-331 61-101 (233)
103 3r8n_C 30S ribosomal protein S 56.0 3.8 0.00013 41.3 1.5 37 295-331 60-100 (206)
104 2ba0_A Archeal exosome RNA bin 55.9 15 0.0005 37.5 5.9 57 202-267 138-194 (229)
105 2ycb_A Beta-CAsp RNAse, cleava 55.8 9.3 0.00032 44.5 5.0 93 214-332 42-134 (636)
106 3eik_A Tata-box-binding protei 55.2 61 0.0021 32.8 10.2 27 346-372 188-216 (218)
107 2ba0_A Archeal exosome RNA bin 51.1 23 0.00078 36.0 6.4 58 298-366 138-195 (229)
108 1wh9_A 40S ribosomal protein S 51.0 5 0.00017 35.3 1.2 27 201-227 36-62 (92)
109 2vqe_C 30S ribosomal protein S 50.5 6.4 0.00022 40.6 2.1 35 296-330 62-100 (239)
110 2z0s_A Probable exosome comple 50.1 27 0.00093 35.5 6.8 59 202-269 150-209 (235)
111 1in0_A YAJQ protein, HI1034; a 44.9 2E+02 0.0069 27.8 11.4 40 317-366 109-149 (163)
112 1ytb_A Protein (tata binding p 44.5 1.4E+02 0.0049 29.1 10.7 25 249-273 60-86 (180)
113 1o4u_A Type II quinolic acid p 43.4 1.1E+02 0.0037 32.1 10.3 99 259-370 13-112 (285)
114 3iev_A GTP-binding protein ERA 41.9 8.9 0.00031 40.2 1.7 35 296-330 240-283 (308)
115 1rm1_A Tata-box binding protei 39.7 1.2E+02 0.0042 31.1 9.7 27 346-372 210-238 (240)
116 3iev_A GTP-binding protein ERA 39.4 15 0.00052 38.4 3.0 39 198-236 238-285 (308)
117 3oss_D Type 2 secretion system 38.8 1.3E+02 0.0044 29.2 9.4 127 220-367 20-178 (181)
118 2fgc_A Acetolactate synthase, 37.9 1E+02 0.0035 30.6 8.5 51 315-374 126-177 (193)
119 1qpo_A Quinolinate acid phosph 36.7 1.8E+02 0.0062 30.4 10.7 104 257-370 5-112 (284)
120 2b7n_A Probable nicotinate-nuc 36.2 1.7E+02 0.006 30.1 10.5 69 298-370 31-99 (273)
121 2z0s_A Probable exosome comple 35.7 85 0.0029 31.8 7.8 59 298-367 150-209 (235)
122 3gr5_A ESCC; secretin, type II 35.4 2.3E+02 0.008 26.7 10.4 25 344-368 126-150 (156)
123 1ega_A Protein (GTP-binding pr 35.1 18 0.00062 37.8 2.7 29 297-325 232-261 (301)
124 3bbn_C Ribosomal protein S3; s 35.0 11 0.00038 38.3 1.0 30 295-324 69-98 (218)
125 3io0_A ETUB protein; tamdem re 34.6 1.6E+02 0.0054 30.0 9.4 130 223-367 57-210 (230)
126 3iot_A Maltose-binding protein 34.3 8.4 0.00029 42.1 0.0 9 258-266 272-280 (449)
127 3paj_A Nicotinate-nucleotide p 32.2 2.7E+02 0.0091 29.7 11.2 70 297-370 78-149 (320)
128 2f1f_A Acetolactate synthase i 32.0 1.5E+02 0.0053 28.4 8.6 42 316-366 100-141 (164)
129 2jbm_A Nicotinate-nucleotide p 32.0 1.8E+02 0.0061 30.6 9.8 69 298-370 44-112 (299)
130 2y9k_A Protein INVG; protein t 31.5 1.1E+02 0.0037 28.2 7.2 26 342-367 108-133 (137)
131 2kl8_A OR15; structural genomi 29.3 68 0.0023 26.4 4.5 46 221-273 22-67 (85)
132 1wf3_A GTP-binding protein; GT 29.3 16 0.00053 38.4 1.0 32 299-330 233-273 (301)
133 2xzm_C KH domain containing pr 29.0 35 0.0012 35.2 3.5 29 200-228 47-75 (243)
134 2vqe_C 30S ribosomal protein S 28.9 19 0.00066 37.0 1.6 26 203-228 65-90 (239)
135 3tqv_A Nicotinate-nucleotide p 28.8 2.9E+02 0.0098 29.0 10.6 70 297-370 45-116 (287)
136 1x1o_A Nicotinate-nucleotide p 28.7 2.3E+02 0.0079 29.6 9.9 54 315-370 58-113 (286)
137 3u27_C Microcompartments prote 28.5 4.2E+02 0.014 26.8 11.3 142 223-374 55-216 (220)
138 3iz6_B 40S ribosomal protein S 28.0 14 0.00048 37.7 0.4 28 200-227 44-71 (227)
139 3c2e_A Nicotinate-nucleotide p 27.0 2.1E+02 0.0071 30.0 9.2 69 298-370 40-114 (294)
140 2pc6_A Probable acetolactate s 25.9 1.6E+02 0.0054 28.4 7.4 49 316-373 101-150 (165)
141 1wf3_A GTP-binding protein; GT 25.5 37 0.0013 35.4 3.1 36 201-236 231-275 (301)
142 3i1m_C 30S ribosomal protein S 25.3 23 0.0008 36.2 1.4 33 202-234 64-100 (233)
143 3af5_A Putative uncharacterize 25.0 29 0.00098 40.5 2.3 61 173-237 82-144 (651)
144 3l4g_B Phenylalanyl-tRNA synth 24.8 66 0.0022 37.1 5.3 115 245-369 248-370 (589)
145 3iot_A Maltose-binding protein 24.4 14 0.00047 40.4 -0.5 18 255-272 184-201 (449)
146 3gnn_A Nicotinate-nucleotide p 24.1 3.2E+02 0.011 28.8 10.0 54 315-370 72-127 (298)
147 3dhx_A Methionine import ATP-b 23.7 1E+02 0.0034 27.2 5.2 52 316-367 36-88 (106)
148 2ja9_A Exosome complex exonucl 23.6 55 0.0019 31.9 3.7 37 202-238 93-130 (175)
149 3u5c_D RP13, YS3, 40S ribosoma 23.2 24 0.00084 36.2 1.1 28 201-228 45-72 (240)
150 3r8n_C 30S ribosomal protein S 23.2 24 0.00082 35.5 1.1 35 202-236 63-101 (206)
151 3szp_A Transcriptional regulat 23.0 2.8E+02 0.0097 26.7 9.0 86 220-331 34-124 (291)
152 2nn6_G Exosome complex exonucl 22.9 23 0.00079 37.4 0.9 37 202-238 212-248 (289)
153 3ezj_A General secretion pathw 22.6 5E+02 0.017 25.7 10.9 24 345-368 144-167 (241)
154 2cxi_A Phenylalanyl-tRNA synth 22.4 56 0.0019 35.2 3.8 114 244-369 227-344 (348)
155 2xr1_A Cleavage and polyadenyl 22.1 25 0.00087 40.9 1.1 61 173-237 77-139 (640)
156 3j20_C 30S ribosomal protein S 22.0 26 0.00088 35.4 1.0 36 201-236 41-83 (210)
157 3dhx_A Methionine import ATP-b 21.0 85 0.0029 27.7 4.1 63 200-268 22-87 (106)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.94 E-value=2.9e-27 Score=234.88 Aligned_cols=172 Identities=31% Similarity=0.461 Sum_probs=135.4
Q ss_pred CCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhccC
Q 003933 197 DSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAG 276 (785)
Q Consensus 197 ~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~~g 276 (785)
...++++|+||.+++|.||||+|++||+|+++|||+|+|.++.+..+++.+|+|+|+|+.++|.+|+.+|.++|++....
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~~ 82 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQN 82 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCCc
Confidence 34689999999999999999999999999999999999987666667788999999999999999999999999875321
Q ss_pred CCCcccccccch--hhccCCccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCH
Q 003933 277 GSPSLVARGLAT--AQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDM 354 (785)
Q Consensus 277 g~p~~~~~g~~~--~~~~~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~ 354 (785)
.........+.+ ........+++|+||.+++|+||||+|++||+|+++|||+|+| ..+. .+..+.+|+|+|+|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i-~~~~--~~~~~~~~~v~I~G~~ 159 (178)
T 2anr_A 83 VAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL-SQKP--DGINLQNRVVTVSGEP 159 (178)
T ss_dssp -----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEE-CCCC------CCEEEEEEESSH
T ss_pred cccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEE-eCCC--CCCCCCceEEEEEcCH
Confidence 110000000000 0011234688999999999999999999999999999999995 3221 2235678999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 003933 355 RQIEIAQEMIKEVLSQT 371 (785)
Q Consensus 355 eqVe~Ak~lI~~ll~~~ 371 (785)
++|++|++||.++|++.
T Consensus 160 ~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 160 EQNRKAVELIIQKIQED 176 (178)
T ss_dssp HHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 99999999999999763
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.94 E-value=3.3e-26 Score=224.05 Aligned_cols=157 Identities=29% Similarity=0.444 Sum_probs=132.5
Q ss_pred eEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhccCCCC
Q 003933 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSP 279 (785)
Q Consensus 200 ~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~~gg~p 279 (785)
.+++|+||.+++|.||||+|++||+|+++|||+|+|.++. .+++.+|+|+|+|+.+++.+|+.+|+++|.+.....
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~--~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~~-- 78 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPE--TPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENFFG-- 78 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCS--STTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSSC--
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccccc--
Confidence 5789999999999999999999999999999999998642 456789999999999999999999999998762110
Q ss_pred cccccccchhhccCCccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHH
Q 003933 280 SLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEI 359 (785)
Q Consensus 280 ~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~ 359 (785)
+ ......+.+|.||.+++|+||||+|++||+|+++|||+|.| ..+.++ ....+++|+|+|+.++|++
T Consensus 79 --------~--~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i-~~~~~~--~~~~~~~v~I~G~~~~v~~ 145 (163)
T 3krm_A 79 --------P--KEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVV-PRDQTP--DENDQVIVKIIGHFYASQM 145 (163)
T ss_dssp --------S--SCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEC-CTTCCC--CTTSEEEEEEEECHHHHHH
T ss_pred --------c--ccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEE-CCCCCC--CCCCceEEEEEeCHHHHHH
Confidence 0 01234577999999999999999999999999999999994 444433 2334568999999999999
Q ss_pred HHHHHHHHHhcccC
Q 003933 360 AQEMIKEVLSQTVR 373 (785)
Q Consensus 360 Ak~lI~~ll~~~~r 373 (785)
|++||+++|++..+
T Consensus 146 A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 146 AQRKIRDILAQVKQ 159 (163)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987543
No 3
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.93 E-value=2.5e-26 Score=227.55 Aligned_cols=165 Identities=30% Similarity=0.551 Sum_probs=128.9
Q ss_pred CeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhccCCC
Q 003933 199 TMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGS 278 (785)
Q Consensus 199 ~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~~gg~ 278 (785)
.++++|+||.+++|+||||+|++||+|+++|||+|+|.++ ..++.+|+|+|+|+.++|.+|+.+|.++|++...+..
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~---~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~ 78 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD---DGTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGNP 78 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECC---TTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC----
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecC---CCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCCC
Confidence 4688999999999999999999999999999999999853 2356789999999999999999999999998742211
Q ss_pred Cc--ccccccchh------hccCCccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEE
Q 003933 279 PS--LVARGLATA------QASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRV 350 (785)
Q Consensus 279 p~--~~~~g~~~~------~~~~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtI 350 (785)
.. ...+++... .......+++|.||.+++|+||||+|++||+|+++|||+|+| .++. +...++.+|+|+|
T Consensus 79 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i-~~~~-~~~~~~~~~~v~I 156 (174)
T 1j4w_A 79 GGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIEL-QRNP-PPNADPNMKLFTI 156 (174)
T ss_dssp -------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEE-ECCC-TTTSCTTEEEEEE
T ss_pred CCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEE-CCCC-CCCCCCCceEEEE
Confidence 00 000000000 001124578999999999999999999999999999999995 3332 3344577999999
Q ss_pred EcCHHHHHHHHHHHHHHH
Q 003933 351 TGDMRQIEIAQEMIKEVL 368 (785)
Q Consensus 351 sG~~eqVe~Ak~lI~~ll 368 (785)
+|+.++|++|++||+++|
T Consensus 157 ~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 157 RGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp ECCHHHHHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHHHHhC
Confidence 999999999999999875
No 4
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.93 E-value=3.3e-26 Score=223.71 Aligned_cols=160 Identities=31% Similarity=0.550 Sum_probs=131.2
Q ss_pred eEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhccCCCC
Q 003933 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSP 279 (785)
Q Consensus 200 ~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~~gg~p 279 (785)
++++|+||.+++|+||||+|++||+|+++|||+|+|.++. ..+.+.+|+|+|+|+.++|.+|+.+|+++|++....+..
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~-~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~~~~ 80 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDG-SQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFG 80 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCT-TSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSCCCS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCC-CCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 6889999999999999999999999999999999998653 234567899999999999999999999999876432211
Q ss_pred cccccccchhhccCCccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHH
Q 003933 280 SLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEI 359 (785)
Q Consensus 280 ~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~ 359 (785)
.....+ .....+++|.||.+++|+||||+|++||+|+++|||+|.| .++ ...+.+|+|+|+|+.++|++
T Consensus 81 ~~~~~~------~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i-~~~----~~~~~~~~v~I~G~~~~v~~ 149 (164)
T 2jvz_A 81 DRNEYG------SRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQF-KQD----DGTGPEKIAHIMGPPDRCEH 149 (164)
T ss_dssp SCSSCT------TSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEE-CCC----CTTSSEEEEEEESCHHHHHH
T ss_pred CccccC------CCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEE-eCC----CCCCCcEEEEEEcCHHHHHH
Confidence 110000 0112457899999999999999999999999999999995 322 12456899999999999999
Q ss_pred HHHHHHHHHhcc
Q 003933 360 AQEMIKEVLSQT 371 (785)
Q Consensus 360 Ak~lI~~ll~~~ 371 (785)
|++||+++|++.
T Consensus 150 A~~~I~~~i~~~ 161 (164)
T 2jvz_A 150 AARIINDLLQSL 161 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 999999999763
No 5
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.93 E-value=5.8e-26 Score=221.60 Aligned_cols=158 Identities=27% Similarity=0.443 Sum_probs=132.0
Q ss_pred CCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhccC
Q 003933 197 DSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAG 276 (785)
Q Consensus 197 ~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~~g 276 (785)
+..++++|+||.+++|.||||+|++||+|+++|||+|+|.+. ++.+|+|+|+|+.++|.+|+.+|.++|.+....
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~~ 76 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTNAIFKAFAMIIDKLEEDISS 76 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC-----TTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHTS
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC-----CCCceEEEEEeCHHHHHHHHHHHHHHHHhhccc
Confidence 356899999999999999999999999999999999999864 356899999999999999999999999876321
Q ss_pred CCCcccccccchhhccCCccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHH
Q 003933 277 GSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQ 356 (785)
Q Consensus 277 g~p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eq 356 (785)
.... .. .......+++|.||.+++|+||||+|++||+|+++|||+|+| ..+.++ .+++++|+|+|+.++
T Consensus 77 ~~~~----~~---~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i-~~~~~~---~~~~~~v~I~G~~~~ 145 (160)
T 2jzx_A 77 SMTN----ST---AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQS 145 (160)
T ss_dssp CCCS----SS---CCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECC-CCCCST---TCCEEEEEEEECHHH
T ss_pred cCCC----Cc---cCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEE-CCCCCC---CCCceEEEEEcCHHH
Confidence 1100 00 001234688999999999999999999999999999999994 433333 467899999999999
Q ss_pred HHHHHHHHHHHHhc
Q 003933 357 IEIAQEMIKEVLSQ 370 (785)
Q Consensus 357 Ve~Ak~lI~~ll~~ 370 (785)
|++|+++|.++|.+
T Consensus 146 v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 146 IIECVKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998865
No 6
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.79 E-value=1.8e-19 Score=173.75 Aligned_cols=137 Identities=19% Similarity=0.251 Sum_probs=105.4
Q ss_pred CeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhccCCC
Q 003933 199 TMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGS 278 (785)
Q Consensus 199 ~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~~gg~ 278 (785)
.++.+|+||.+.||.+||++|++|+.|++++|++|....+ ..++++...++++.|.+|+.+| . .
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~------~~~~~i~~~~~p~~v~~~~~~l----~-~----- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE------DTCTFHIYGEDQDAVKKARSFL----E-F----- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET------TTTEEEEEESSHHHHHHHHHHH----C-E-----
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC------CchheeeccCCHHHHHHHHHhh----h-c-----
Confidence 4689999999999999999999999999999955433322 2244554455789888876532 1 1
Q ss_pred CcccccccchhhccCCccEEEEEecCCccceeecCCchHHHHHHHHhCC-eEEEecCCCCCCCCCCCc--cEEEEEcCHH
Q 003933 279 PSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGA-RIQVLIPQHLPEGDGSKE--RIVRVTGDMR 355 (785)
Q Consensus 279 p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGA-rIqI~i~~~lP~~~~s~e--r~VtIsG~~e 355 (785)
...+|.||.+++|++|||+|+|||.|++.||| +|.|....+. ....++ +.|+|+|+.+
T Consensus 67 -----------------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~--~~~~~~~~~~vtI~G~~~ 127 (144)
T 2qnd_A 67 -----------------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEK--NVPQEEGMVPFVFVGTKD 127 (144)
T ss_dssp -----------------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTT--CCCCCTTEEEEEEEEEHH
T ss_pred -----------------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCC--CccccCCeeEEEEEeCHH
Confidence 12789999999999999999999999999997 9996432221 111223 3589999999
Q ss_pred HHHHHHHHHHHHHhc
Q 003933 356 QIEIAQEMIKEVLSQ 370 (785)
Q Consensus 356 qVe~Ak~lI~~ll~~ 370 (785)
+|++|++||+++|+.
T Consensus 128 ~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 128 SIANATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999974
No 7
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.75 E-value=1.3e-18 Score=178.59 Aligned_cols=146 Identities=27% Similarity=0.354 Sum_probs=110.8
Q ss_pred CCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEeccc-----HHHHHHHHHHHHHHH
Q 003933 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGT-----LSNIDKAEKLINAVI 270 (785)
Q Consensus 196 ~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt-----~e~V~kA~~lI~elI 270 (785)
.....+.+|.||.+++|.|||++|++||.|+++|||+|+|..+ ++.|+|+++ .+.|.+|+++|.+++
T Consensus 30 ~~aP~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~--------~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 30 EFFKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE--------TGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp ---CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT--------TCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC--------CCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 3445678999999999999999999999999999999999743 456777764 699999999999998
Q ss_pred HhhccCCCCcccccccchhhccCCccEEEEEec-----C------CccceeecCCchHHHHHHHHhCCeEEEecCCCCCC
Q 003933 271 AEADAGGSPSLVARGLATAQASGAAEQVEIKVP-----N------EKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPE 339 (785)
Q Consensus 271 ~e~~~gg~p~~~~~g~~~~~~~~~~~~~~i~VP-----~------~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~ 339 (785)
+.... . .+..... +......|.|. + ..+|+||||+|+|||.|++.|||+|.|.
T Consensus 102 rg~~~----e---~g~~ll~--dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~------- 165 (219)
T 2e3u_A 102 RGFSP----E---RAFRLLN--EGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY------- 165 (219)
T ss_dssp TTCCH----H---HHGGGGS--TTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE-------
T ss_pred ccCCc----c---ccceecc--CCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC-------
Confidence 42210 0 0000000 01111123332 1 2689999999999999999999999952
Q ss_pred CCCCCccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 340 GDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 340 ~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
+++|+|.|+.++|+.|+++|+++|.+
T Consensus 166 -----~~~v~i~G~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 166 -----GKTVAIIGNPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp -----TTEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred -----CeEEEEEeCHHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999965
No 8
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.71 E-value=3.7e-17 Score=178.82 Aligned_cols=172 Identities=12% Similarity=0.220 Sum_probs=124.1
Q ss_pred CCCCeEEEEEecCCccceeecCCc--hHHHHHHHHhCCeEEEccCC--CCCCCCCCcceEecccHHHHHHHHHHHHHH--
Q 003933 196 DDSTMSRKIEVPNNKVGVLIGKAG--DTIRYLQYNSGAKIQITRDA--DADPHAATRPVEIIGTLSNIDKAEKLINAV-- 269 (785)
Q Consensus 196 ~~~~~t~~IlVP~~~VG~IIGk~G--~tIK~IqeeTGAkI~I~k~~--d~~p~s~eRiV~I~Gt~e~V~kA~~lI~el-- 269 (785)
....++++|.||..+++.||||+| ++|++|+++|+|+|+|.... ...+......|+|+|..++|++|+++|+++
T Consensus 26 ~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~P 105 (376)
T 3n89_A 26 NPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNCH 105 (376)
T ss_dssp CTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSCE
T ss_pred cCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcCC
Confidence 457899999999999999999999 99999999999999997543 112224557899999999999999999874
Q ss_pred --------------------HHhhccCC---------------CCcccccccchh----------------hc---cCCc
Q 003933 270 --------------------IAEADAGG---------------SPSLVARGLATA----------------QA---SGAA 295 (785)
Q Consensus 270 --------------------I~e~~~gg---------------~p~~~~~g~~~~----------------~~---~~~~ 295 (785)
|...+..+ ...++.+|.... .. ....
T Consensus 106 l~i~~elp~~~i~~~~l~~~I~qq~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~~akeA~~~Ll~~l~~~e~~~~~~ 185 (376)
T 3n89_A 106 FTVFMALSKMKMPLHELQAHVRQNPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQHELIEAAKRLNEILFRESPAPENN 185 (376)
T ss_dssp EEEEEECTTCSSCHHHHHHHHHHCCCTTCEEEEEEEC-----CEEEEEEEEEGGGHHHHHHHHHHHHHHHCC--CCCSSC
T ss_pred ceEEEEccccccCcchhhhhhccceeCceEEEeCCcccccCCCCCEEEEEcChhhHHHHHHHHHHHHHHHHhhhcccccc
Confidence 21100000 011112222110 00 1234
Q ss_pred cEEEEEecCCccceeecCCc--hHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHH
Q 003933 296 EQVEIKVPNEKVGLIIGRGG--ETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVL 368 (785)
Q Consensus 296 ~~~~i~VP~~~vG~VIGKgG--etIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll 368 (785)
.++.|.|+...+..||||+| ..||+|+++|||+|. |-+.+.......+..+|+|+|+.++|+.|+++|+++|
T Consensus 186 ~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~-FP~~~d~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 186 FTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIIS-YPCYNNRNETRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp EEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEE-CC---------CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred eEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEE-CCCCCCcccccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 67789999999999999998 667999999999999 4322211111124568999999999999999999986
No 9
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.68 E-value=7.4e-17 Score=162.00 Aligned_cols=141 Identities=20% Similarity=0.267 Sum_probs=111.3
Q ss_pred EEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEec-----ccHHHHHHHHHHHHHHHHhhcc
Q 003933 201 SRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEII-----GTLSNIDKAEKLINAVIAEADA 275 (785)
Q Consensus 201 t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~-----Gt~e~V~kA~~lI~elI~e~~~ 275 (785)
..+++||.+.+|.|||++|++++.|+++++++|.|... ++.|+|. ++...|.+|.++|.++.+.+..
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~--------~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~ 76 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE--------NSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPP 76 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT--------TTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcC--------CCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCH
Confidence 46999999999999999999999999999999999742 5677777 8999999999999998875421
Q ss_pred CCCCcccccccchhhccCCccEEEEEec----------CCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCc
Q 003933 276 GGSPSLVARGLATAQASGAAEQVEIKVP----------NEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKE 345 (785)
Q Consensus 276 gg~p~~~~~g~~~~~~~~~~~~~~i~VP----------~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~e 345 (785)
.....+.. +......|.|. ...+|+||||+|+|||.|+..|||+|.|. +
T Consensus 77 e~A~~Ll~---------Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~------------~ 135 (191)
T 1tua_A 77 EKAFRLLE---------EDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG------------E 135 (191)
T ss_dssp HHHGGGGS---------TTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC------------S
T ss_pred HHhhhccc---------CcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc------------C
Confidence 00000100 11112233343 23589999999999999999999999951 3
Q ss_pred cEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 346 RIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 346 r~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
++|+|.|+.+.|+.|+..|+++|.+
T Consensus 136 ~~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 136 YEVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp SEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred CEEEEEeChHHHHHHHHHHHHHHcC
Confidence 5899999999999999999999964
No 10
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.48 E-value=3.2e-14 Score=122.15 Aligned_cols=75 Identities=31% Similarity=0.450 Sum_probs=67.7
Q ss_pred CeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhh
Q 003933 199 TMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (785)
Q Consensus 199 ~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~ 273 (785)
.++++|+||.+++|+||||+|++||+|+++|||+|+|.++.+..+++.+|.|+|+|+.++|.+|+.+|.++|+++
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ee 76 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC--
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 468899999999999999999999999999999999998755566778999999999999999999999998753
No 11
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.48 E-value=4.1e-14 Score=120.95 Aligned_cols=69 Identities=32% Similarity=0.509 Sum_probs=62.3
Q ss_pred ccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
...++|+||.+++|+||||+|++||+|+++|||+|+| .++ ...+|+|+|+|+.++|.+|++||.++|++
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i-~~~------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEG------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEE-CSS------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEE-ecC------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999995 322 34689999999999999999999999976
No 12
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.47 E-value=6.3e-14 Score=128.50 Aligned_cols=74 Identities=27% Similarity=0.561 Sum_probs=64.0
Q ss_pred EEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhccc
Q 003933 297 QVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTV 372 (785)
Q Consensus 297 ~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~~~ 372 (785)
+++|+||.++||+||||+|++||+|+++|||+|+| .++.. ...+..+|+|+|+|+.++|++|++||+++|++..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I-~~~~~-~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEI-SRQLP-PNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEE-CCCCC-TTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEE-cCccC-CCCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 67999999999999999999999999999999995 33322 2334578999999999999999999999998643
No 13
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.46 E-value=1.2e-13 Score=120.49 Aligned_cols=72 Identities=33% Similarity=0.605 Sum_probs=63.5
Q ss_pred CccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
...+++|.||.+++|+||||+|++||+|+++|||+|+| . +. ...+.+|+|+|+|+.++|++|++||+++|++
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i-~-~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-D-EP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEE-C-CT---TSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEE-c-CC---CCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999995 2 22 2245789999999999999999999999975
No 14
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.46 E-value=9.2e-14 Score=119.25 Aligned_cols=73 Identities=36% Similarity=0.526 Sum_probs=62.2
Q ss_pred cEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 296 EQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 296 ~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
++++|.||.+++|+||||+|++||+|+++|||+|+| .++. .....+.+|+|+|+|+.++|++|++||+++|++
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i-~~~~-~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQI-SKKG-EFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEE-CCTT-CCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEE-CcCC-CCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999995 3321 112345789999999999999999999999864
No 15
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.45 E-value=9.7e-14 Score=121.12 Aligned_cols=73 Identities=36% Similarity=0.566 Sum_probs=63.3
Q ss_pred CccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhcc
Q 003933 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 371 (785)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~~ 371 (785)
...+++|+||.+++|+||||+|++||+|+++|||+|+| .+ . ...+.+|+|+|+|+.++|++|+.||+++|.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i-~~-~---~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKI-AN-P---VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEE-CC-C---CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEE-ec-C---CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 35678999999999999999999999999999999995 32 2 23567999999999999999999999999765
No 16
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.43 E-value=8.5e-14 Score=119.00 Aligned_cols=70 Identities=27% Similarity=0.477 Sum_probs=65.3
Q ss_pred CCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHh
Q 003933 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAE 272 (785)
Q Consensus 198 ~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e 272 (785)
..++++|+||.+++|.||||+|++||+|+++|||+|+|.++ ++.+|+|+|+|+.++|.+|+.+|.++|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-----CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-----CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 45899999999999999999999999999999999999864 35689999999999999999999999986
No 17
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.43 E-value=1.3e-13 Score=122.95 Aligned_cols=74 Identities=35% Similarity=0.619 Sum_probs=64.8
Q ss_pred CccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhccc
Q 003933 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTV 372 (785)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~~~ 372 (785)
...+++|.||.+++|+||||+|++||+|+++|||+|+| .++. +...+|+|+|+|+.++|++|++||+++|++..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I-~~~~----~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQI-APDS----GGLPERSCMLTGTPESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEE-CSCC----TTCSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEE-cCCC----CCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 45678999999999999999999999999999999995 3221 24578999999999999999999999998644
No 18
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.43 E-value=2.7e-13 Score=119.10 Aligned_cols=73 Identities=36% Similarity=0.630 Sum_probs=63.3
Q ss_pred ccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
....+|.||.+++|+||||+|++||+|+++|||+|.| ..+.. .....+|.|+|+|++++|++|++||+++|.+
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i-~~~~~--~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMIL-IQDGS--QNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEE-CSSSC--SSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEE-cCCCC--CCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 4678999999999999999999999999999999995 43331 2346789999999999999999999999863
No 19
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.43 E-value=1.3e-13 Score=118.47 Aligned_cols=71 Identities=37% Similarity=0.603 Sum_probs=63.3
Q ss_pred ccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
..+++|.||.+++|+||||+|++||+|+++|||+|+| . +. ...+.+|+|+|+|+.++|++|+.||+++|++
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i-~-~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI-A-NP---VEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEE-C-CC---CTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEE-c-CC---CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999999995 3 22 3456799999999999999999999999875
No 20
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.43 E-value=1e-13 Score=122.25 Aligned_cols=76 Identities=32% Similarity=0.454 Sum_probs=69.4
Q ss_pred CeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhc
Q 003933 199 TMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (785)
Q Consensus 199 ~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~ 274 (785)
.++++|+||.+++|+||||+|++||+|+++|||+|+|.++.+..+++.+|.|+|+|+.++|++|+.+|.++|.+..
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 4688999999999999999999999999999999999976555567788999999999999999999999998763
No 21
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.42 E-value=3.2e-13 Score=117.88 Aligned_cols=74 Identities=26% Similarity=0.482 Sum_probs=67.4
Q ss_pred CCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhh
Q 003933 197 DSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (785)
Q Consensus 197 ~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~ 273 (785)
...++++|+||.+++|.||||+|++||+|+++|||+|+|.+. .+++.+|+|+|+|+.++|++|+.+|.++|++.
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT---TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC---CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999999999999999999853 34567899999999999999999999999986
No 22
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=1.8e-13 Score=125.27 Aligned_cols=73 Identities=32% Similarity=0.554 Sum_probs=63.0
Q ss_pred cEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhcccC
Q 003933 296 EQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTVR 373 (785)
Q Consensus 296 ~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~~~r 373 (785)
.+++|+||.+++++||||+|++||+|+++|+|+|+| .++. ..+.+|+|+|+|+.++|++|++||+++|++...
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I-~~~~----~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~~ 83 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQF-KQDD----GTGPEKIAHIMGPPDRCEHAARIINDLLQSLRS 83 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEE-CSSC----SSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEE-ecCC----CCCceeEEEEEeCHHHHHHHHHHHHHHHhcccc
Confidence 467999999999999999999999999999999995 3221 245689999999999999999999999987543
No 23
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.41 E-value=1.5e-13 Score=123.01 Aligned_cols=76 Identities=36% Similarity=0.615 Sum_probs=65.2
Q ss_pred CccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhccc
Q 003933 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTV 372 (785)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~~~ 372 (785)
...+++|+||.+++|+||||+|++||+|+++|||+|+| .++.. .....+|+|+|+|+.++|++|++||+++|++..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I-~~~~~--~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVM-IQDGP--QNTGADKPLRITGDPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEE-CCSCC--CSSCSCEEEEEEECTTTHHHHHHHHHHHHCCCS
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEe-cCCCC--CCCCCceEEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 45788999999999999999999999999999999995 33321 124478999999999999999999999997643
No 24
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=1.6e-13 Score=125.88 Aligned_cols=74 Identities=24% Similarity=0.464 Sum_probs=66.3
Q ss_pred EEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhc
Q 003933 201 SRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (785)
Q Consensus 201 t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~ 274 (785)
+++|+||.++||+||||+|++||+|+++|||+|+|.++.+......+|+|+|+|+.++|++|+++|+++|++..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999876433334568999999999999999999999998763
No 25
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.40 E-value=1.7e-13 Score=121.53 Aligned_cols=72 Identities=33% Similarity=0.605 Sum_probs=63.7
Q ss_pred CccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
...+++|.||.+++|+||||+|++||+|+++|||+|+| . +. ...+.+|+|+|+|+.++|++|++||+++|++
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I-~-~~---~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI-D-EP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEE-C-SC---CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEe-c-CC---CCCCCccEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999995 2 22 2356789999999999999999999999976
No 26
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.40 E-value=2e-13 Score=120.36 Aligned_cols=74 Identities=36% Similarity=0.526 Sum_probs=63.2
Q ss_pred cEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhcc
Q 003933 296 EQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 371 (785)
Q Consensus 296 ~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~~ 371 (785)
.+++|.||.+++|+||||+|++||+|+++|||+|+| .++. .....+.+|+|+|+|+.++|++|+.||+++|.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I-~~~~-~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQI-SKKG-EFLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEE-CCTT-CBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEE-ccCC-CCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 578999999999999999999999999999999995 3321 0122457899999999999999999999998763
No 27
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.40 E-value=1.7e-13 Score=117.75 Aligned_cols=73 Identities=32% Similarity=0.527 Sum_probs=67.0
Q ss_pred CCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhh
Q 003933 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (785)
Q Consensus 198 ~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~ 273 (785)
..++++|+||.+++|.||||+|++||+|+++|||+|+|.+. .+++.+|.|+|+|+.++|++|+.+|.++|+++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP---VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC---CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 45789999999999999999999999999999999999863 45677999999999999999999999999864
No 28
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.39 E-value=3e-13 Score=117.99 Aligned_cols=73 Identities=33% Similarity=0.538 Sum_probs=65.6
Q ss_pred CCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhh
Q 003933 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (785)
Q Consensus 198 ~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~ 273 (785)
..++++|+||.+++|.||||+|++||+|+++|||+|+|.+. .+++.+|.|+|+|+.++|++|+.+|.++|+++
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~---~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP---VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC---CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 46889999999999999999999999999999999999864 34567999999999999999999999999875
No 29
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.39 E-value=3.5e-13 Score=120.21 Aligned_cols=75 Identities=31% Similarity=0.576 Sum_probs=68.1
Q ss_pred CCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhc
Q 003933 197 DSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (785)
Q Consensus 197 ~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~ 274 (785)
...++++|+||.++||+||||+|++||+|+++|||+|+|.++. ++..+|+|+|+|+.++|++|+.+|+++|++..
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~---~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS---GGLPERSCMLTGTPESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC---TTCSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC---CCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 3568999999999999999999999999999999999998653 34568999999999999999999999999863
No 30
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=1.6e-13 Score=120.24 Aligned_cols=69 Identities=30% Similarity=0.484 Sum_probs=60.8
Q ss_pred CccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
...+++|.||.+++|+||||+|++||+|+++|||+|+| ..+ .++++|+|+|+.++|++|++||+++|..
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I-~~~-------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVT-PGR-------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEEC-CCS-------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEe-cCC-------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 45678999999999999999999999999999999994 221 1368999999999999999999998763
No 31
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.38 E-value=9.5e-13 Score=115.64 Aligned_cols=75 Identities=28% Similarity=0.561 Sum_probs=66.7
Q ss_pred CCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHh
Q 003933 197 DSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAE 272 (785)
Q Consensus 197 ~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e 272 (785)
....+++|+||.+++|+||||+|++||+|+++|||+|.|.++.. ...+.+|.|+|+|+.+.|++|+.+|+++++|
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~-~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS-QNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSC-SSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCC-CCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 44678999999999999999999999999999999999987532 3456789999999999999999999999864
No 32
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=4.5e-13 Score=122.72 Aligned_cols=74 Identities=26% Similarity=0.521 Sum_probs=65.6
Q ss_pred CeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhcc
Q 003933 199 TMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADA 275 (785)
Q Consensus 199 ~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~~ 275 (785)
..+++|+||.++|++||||+|++||+|+++|+|+|+|.++. ..+.+|+|+|+|+.++|++|+++|+++|++...
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~---~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~~ 83 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---GTGPEKIAHIMGPPDRCEHAARIINDLLQSLRS 83 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC---SSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC-
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC---CCCceeEEEEEeCHHHHHHHHHHHHHHHhcccc
Confidence 35789999999999999999999999999999999998653 245689999999999999999999999998764
No 33
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.38 E-value=3.4e-13 Score=119.51 Aligned_cols=75 Identities=25% Similarity=0.477 Sum_probs=68.2
Q ss_pred CCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhh
Q 003933 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (785)
Q Consensus 196 ~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~ 273 (785)
....++++|+||.+++|+||||+|++||+|+++|||+|+|.+. .+++.+|+|+|+|+.++|++|+++|+++|++.
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~---~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC---CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC---CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 3457899999999999999999999999999999999999853 34567899999999999999999999999986
No 34
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.37 E-value=6.3e-13 Score=121.20 Aligned_cols=75 Identities=33% Similarity=0.571 Sum_probs=63.7
Q ss_pred CccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhcc
Q 003933 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 371 (785)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~~ 371 (785)
...+++|+||.+++|+||||+|++||+|+++|||+|+| .+.. ......+|+|+|+|+.++|++|++||+++|.+.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I-~~~~--~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITC-DKES--EGTLLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEE-CCSS--CCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEE-ecCC--CCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 45678999999999999999999999999999999995 3222 112346899999999999999999999999753
No 35
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.36 E-value=4.2e-13 Score=120.21 Aligned_cols=78 Identities=27% Similarity=0.535 Sum_probs=68.9
Q ss_pred CCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhc
Q 003933 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (785)
Q Consensus 196 ~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~ 274 (785)
....++++|+||.+++|+||||+|++||+|+++|||+|+|.++... ....+|+|+|+|+.++|++|+++|+++|++..
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~-~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ-NTGADKPLRITGDPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC-SSCSCEEEEEEECTTTHHHHHHHHHHHHCCCS
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCC-CCCCceEEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 3467899999999999999999999999999999999999875432 23468999999999999999999999998753
No 36
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.35 E-value=1.9e-12 Score=118.04 Aligned_cols=77 Identities=30% Similarity=0.531 Sum_probs=67.7
Q ss_pred CCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhh
Q 003933 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (785)
Q Consensus 196 ~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~ 273 (785)
....++++|+||.++||+||||+|++||+|+++|||+|+|.+..+.. ...+|.|+|+|+.++|++|+.+|+++|++.
T Consensus 11 ~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 11 ENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT-LLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp SSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS-SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC-CCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 45668999999999999999999999999999999999998653311 235899999999999999999999999875
No 37
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.32 E-value=8.5e-13 Score=130.69 Aligned_cols=110 Identities=25% Similarity=0.290 Sum_probs=87.2
Q ss_pred ccccccchhhhhhhcccchhhhccCCCCCCC------------CCCCCCeEEEEEecCCccceeecCCchHHHHHHHHhC
Q 003933 163 EEETVKEEESVEPSNVVPQQVVDNSKSDDPS------------STDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSG 230 (785)
Q Consensus 163 ~~~i~g~~esVE~A~~lI~~ii~~~~~~~p~------------~~~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTG 230 (785)
...|.+..++|+.|+.+|.+++......... ...+..++++|+||.+++|+||||+|++||+|+++||
T Consensus 55 ~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tg 134 (178)
T 2anr_A 55 VCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSG 134 (178)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSS
T ss_pred eEEEEeCHHHHHHHHHHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHC
Confidence 4567788999999999999888644321100 0112347899999999999999999999999999999
Q ss_pred CeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhh
Q 003933 231 AKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (785)
Q Consensus 231 AkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~ 273 (785)
|+|.|.++.+ .+++.+|.|+|+|+.++|.+|+.+|.++|++.
T Consensus 135 a~I~i~~~~~-~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 135 AWVQLSQKPD-GINLQNRVVTVSGEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp CEEEECCCC-----CCEEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred CEEEEeCCCC-CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhC
Confidence 9999986532 34567899999999999999999999999874
No 38
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=5.9e-13 Score=116.73 Aligned_cols=71 Identities=24% Similarity=0.365 Sum_probs=64.1
Q ss_pred CCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhh
Q 003933 197 DSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (785)
Q Consensus 197 ~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~ 273 (785)
...++++|.||.+++|+||||+|++||+|+++|||+|+|.+..+ +++|+|+|+.++|++|+.+|+++|..+
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~------~~~v~ItG~~e~v~~A~~~I~~~i~~r 77 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDK------EPVFAVTGMPENVDRAREEIEAHITLR 77 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSS------CCEEEEEECTTTHHHHHHHHHHHHHSC
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCC------CCeEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 35689999999999999999999999999999999999986432 689999999999999999999987754
No 39
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.31 E-value=1.1e-12 Score=129.48 Aligned_cols=108 Identities=23% Similarity=0.410 Sum_probs=84.3
Q ss_pred ccccccchhhhhhhcccchhhhccCCCCCCC------------------CCCCCCeEEEEEecCCccceeecCCchHHHH
Q 003933 163 EEETVKEEESVEPSNVVPQQVVDNSKSDDPS------------------STDDSTMSRKIEVPNNKVGVLIGKAGDTIRY 224 (785)
Q Consensus 163 ~~~i~g~~esVE~A~~lI~~ii~~~~~~~p~------------------~~~~~~~t~~IlVP~~~VG~IIGk~G~tIK~ 224 (785)
...|.+..++|+.|+.+|.+++......... ......++++|+||.+++|+||||+|++||+
T Consensus 49 ~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~ 128 (174)
T 1j4w_A 49 IAQITGPPDRAQHAAEIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKS 128 (174)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHC-----------------------------CEEEEEEETTTHHHHHCGGGHHHHH
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHH
Confidence 4567788999999999998888633211000 0012346899999999999999999999999
Q ss_pred HHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHH
Q 003933 225 LQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVI 270 (785)
Q Consensus 225 IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI 270 (785)
|+++|||+|+|.++.....++.+|.|+|+|+.++|++|+.+|+++|
T Consensus 129 I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 129 ISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp HHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred HHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 9999999999987543333466899999999999999999999875
No 40
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.31 E-value=1.7e-12 Score=110.35 Aligned_cols=67 Identities=21% Similarity=0.448 Sum_probs=59.1
Q ss_pred ccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHH
Q 003933 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVL 368 (785)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll 368 (785)
..+.+|.||.+++|.||||+|++||+|+++|||+|.| .++ ...+|.|+|+|+.+.|++|+++|++++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i-~~~------g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRI-PPD------SEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEEC-CCC------CSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEE-CCC------CCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 4578999999999999999999999999999999993 322 236789999999999999999999875
No 41
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=2.2e-12 Score=115.59 Aligned_cols=74 Identities=19% Similarity=0.412 Sum_probs=63.6
Q ss_pred CccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhcccC
Q 003933 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTVR 373 (785)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~~~r 373 (785)
...+.+|.||.+++|+||||+|++||+|+++|||+|+| .+. +..++.|+|+|+.++|++|+++|++++.+..+
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i-~~~------~~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQI-PRP------DDPSNQIKITGTKEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBC-CCT------TSSCCEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEe-CCC------CCCCCeEEEEECHHHHHHHHHHHHHHhhcccc
Confidence 45678999999999999999999999999999999993 221 22468999999999999999999999987554
Q ss_pred C
Q 003933 374 P 374 (785)
Q Consensus 374 ~ 374 (785)
.
T Consensus 88 ~ 88 (94)
T 2cte_A 88 R 88 (94)
T ss_dssp C
T ss_pred c
Confidence 3
No 42
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.31 E-value=2.3e-12 Score=125.74 Aligned_cols=108 Identities=22% Similarity=0.314 Sum_probs=88.6
Q ss_pred cccccccchhhhhhhcccchhhhccCCCCCCCCCCCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCC
Q 003933 162 KEEETVKEEESVEPSNVVPQQVVDNSKSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADA 241 (785)
Q Consensus 162 k~~~i~g~~esVE~A~~lI~~ii~~~~~~~p~~~~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~ 241 (785)
....+.++.+++..|+.+|.+++.......+. ....++.+|+||.+++|+||||+|++||+|+++|||+|.|.++.
T Consensus 49 r~v~I~G~~e~v~~A~~~I~~~~~e~~~~~~~--~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~-- 124 (163)
T 3krm_A 49 RMVIITGPPEAQFKAQGRIYGKLKEENFFGPK--EEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQ-- 124 (163)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHTTSSCSS--CCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTC--
T ss_pred eEEEEEcCHHHHHHHHHHHHHHHhcccccccc--cCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCC--
Confidence 44778899999999999998888644322221 33457889999999999999999999999999999999998643
Q ss_pred CCCCCC-cceEecccHHHHHHHHHHHHHHHHhh
Q 003933 242 DPHAAT-RPVEIIGTLSNIDKAEKLINAVIAEA 273 (785)
Q Consensus 242 ~p~s~e-RiV~I~Gt~e~V~kA~~lI~elI~e~ 273 (785)
.++..+ +.|+|+|+.++|++|+.+|.++|++.
T Consensus 125 ~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 125 TPDENDQVIVKIIGHFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp CCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 233444 48999999999999999999999986
No 43
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.30 E-value=2.3e-12 Score=125.46 Aligned_cols=109 Identities=18% Similarity=0.362 Sum_probs=87.7
Q ss_pred ccccccchhhhhhhcccchhhhccCCCCC--CCC--CCCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccC
Q 003933 163 EEETVKEEESVEPSNVVPQQVVDNSKSDD--PSS--TDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRD 238 (785)
Q Consensus 163 ~~~i~g~~esVE~A~~lI~~ii~~~~~~~--p~~--~~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~ 238 (785)
...+.++.++|+.|+.+|.+++....... +.. .....++++|+||.+++|+||||+|++||+|+++|||+|.|.+.
T Consensus 50 ~v~I~G~~~~v~~A~~~I~~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~ 129 (164)
T 2jvz_A 50 PLRIIGDPYKVQQACEMVMDILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQD 129 (164)
T ss_dssp EEEEEECHHHHHHHHHHHHHHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCC
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCC
Confidence 46678889999999999999886433111 000 01113568999999999999999999999999999999999865
Q ss_pred CCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhc
Q 003933 239 ADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (785)
Q Consensus 239 ~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~ 274 (785)
. +.+.+|.|+|+|+.++|++|+.+|.++|++..
T Consensus 130 ~---~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~ 162 (164)
T 2jvz_A 130 D---GTGPEKIAHIMGPPDRCEHAARIINDLLQSLR 162 (164)
T ss_dssp C---TTSSEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred C---CCCCcEEEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 3 34558999999999999999999999998764
No 44
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=5.2e-12 Score=113.85 Aligned_cols=75 Identities=19% Similarity=0.282 Sum_probs=63.7
Q ss_pred CccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhccc
Q 003933 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTV 372 (785)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~~~ 372 (785)
...+++|.||.+++++||||+|++||+|+++|||+|+| .++. .....+|.|+|+|+.++|++|+++|+.++.+..
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i-~~~g---~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~e 89 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQF-PDKD---DGNQPQDQITITGYEKNTEAARDAILRIVGELE 89 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEEC-CCTT---TCSSCSSEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEe-cCCC---CCCCCccEEEEEeCHHHHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999999994 3322 122367999999999999999999999987644
No 45
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.29 E-value=1.3e-12 Score=127.04 Aligned_cols=109 Identities=21% Similarity=0.341 Sum_probs=88.4
Q ss_pred cccccccchhhhhhhcccchhhhccCCCCC-C--CCCCCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccC
Q 003933 162 KEEETVKEEESVEPSNVVPQQVVDNSKSDD-P--SSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRD 238 (785)
Q Consensus 162 k~~~i~g~~esVE~A~~lI~~ii~~~~~~~-p--~~~~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~ 238 (785)
....+.+..++|+.|+.+|.+++....... . .......++++|+||.+++|+||||+|++||+|+++|||+|.|.++
T Consensus 48 r~v~I~G~~~~v~~A~~~I~~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~ 127 (160)
T 2jzx_A 48 RIITLAGPTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD 127 (160)
T ss_dssp EEEEEEEEHHHHHHHHHHHHHHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC
T ss_pred eEEEEEeCHHHHHHHHHHHHHHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC
Confidence 345677888999999998887765321110 0 0112346899999999999999999999999999999999999763
Q ss_pred CCCCCCCCCcceEecccHHHHHHHHHHHHHHHHh
Q 003933 239 ADADPHAATRPVEIIGTLSNIDKAEKLINAVIAE 272 (785)
Q Consensus 239 ~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e 272 (785)
..+++.+|.|+|+|+.++|.+|+++|.++|.|
T Consensus 128 --~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 128 --MLPNSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp --CSTTCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred --CCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 35667899999999999999999999999986
No 46
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.28 E-value=6.9e-12 Score=112.64 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=64.3
Q ss_pred CCccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhccc
Q 003933 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTV 372 (785)
Q Consensus 293 ~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~~~ 372 (785)
....+.+|.||.+++++||||+|++||+|+++|||+|+| .++ .+..+|+|+|+|..++|++|+++|++++++..
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i-~~~-----g~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRF-PQS-----GAPDPNCVTVTGLPENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEEC-CCT-----TCSCTTEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEe-cCC-----CCCCCcEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999999999999999999999994 322 12357899999999999999999999988754
Q ss_pred C
Q 003933 373 R 373 (785)
Q Consensus 373 r 373 (785)
.
T Consensus 88 ~ 88 (95)
T 2ctm_A 88 A 88 (95)
T ss_dssp T
T ss_pred H
Confidence 3
No 47
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=7.5e-12 Score=112.77 Aligned_cols=75 Identities=19% Similarity=0.308 Sum_probs=66.8
Q ss_pred CCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhc
Q 003933 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (785)
Q Consensus 198 ~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~ 274 (785)
..++++|.||..+|++||||+|++||+|+++|||+|+|.++.+ ++..+|.|+|+|+.++|.+|+.+|+.++++..
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~--~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~e 89 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD--GNQPQDQITITGYEKNTEAARDAILRIVGELE 89 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT--CSSCSSEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC--CCCCccEEEEEeCHHHHHHHHHHHHHHHHHHH
Confidence 3478999999999999999999999999999999999986542 33467999999999999999999999998753
No 48
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=4.8e-12 Score=113.30 Aligned_cols=73 Identities=29% Similarity=0.493 Sum_probs=65.3
Q ss_pred CCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhc
Q 003933 197 DSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (785)
Q Consensus 197 ~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~ 274 (785)
...++.+|.||.+++|.|||++|++||+|+++|||+|+|.+.. ..++.|+|+|+.++|++|+.+|++++++..
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-----~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-----DPSNQIKITGTKEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-----SSCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-----CCCCeEEEEECHHHHHHHHHHHHHHhhccc
Confidence 3458999999999999999999999999999999999998532 235799999999999999999999998864
No 49
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.23 E-value=5.4e-12 Score=115.14 Aligned_cols=83 Identities=20% Similarity=0.275 Sum_probs=70.9
Q ss_pred hhhhhcccchhhhccCCCCCCCCCCCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceE
Q 003933 172 SVEPSNVVPQQVVDNSKSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVE 251 (785)
Q Consensus 172 sVE~A~~lI~~ii~~~~~~~p~~~~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~ 251 (785)
+|+.|+..|..++ .++.+|.||.+++|.|||++|++||+|+++|||+|+|.++.+ ..+.|+
T Consensus 3 ~~~~Ak~~i~~~a--------------p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~-----~~~~V~ 63 (104)
T 2ctk_A 3 SGSSGKEALEALV--------------PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL-----QSDIIA 63 (104)
T ss_dssp CCCCCCCCCCCSS--------------CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT-----TCCEEE
T ss_pred hHHHHHHHHHhhC--------------CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCC-----CcceEE
Confidence 4566666665544 478999999999999999999999999999999999986532 346999
Q ss_pred ecccHHHHHHHHHHHHHHHHhh
Q 003933 252 IIGTLSNIDKAEKLINAVIAEA 273 (785)
Q Consensus 252 I~Gt~e~V~kA~~lI~elI~e~ 273 (785)
|+|+.++|++|+.+|+.++++.
T Consensus 64 I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 64 ITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp EEECHHHHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999875
No 50
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.21 E-value=1.2e-11 Score=112.85 Aligned_cols=70 Identities=20% Similarity=0.316 Sum_probs=60.9
Q ss_pred ccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhcc
Q 003933 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 371 (785)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~~ 371 (785)
....+|.||.+++++|||++|++||+|+++|||+|.| .++ ....+.|+|+|+.++|++|+++|++++++.
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I-~~~------g~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHV-PAP------ELQSDIIAITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEEC-CCT------TTTCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEe-cCC------CCCcceEEEEcCHHHHHHHHHHHHHHHhhH
Confidence 4678999999999999999999999999999999994 322 224579999999999999999999988763
No 51
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.20 E-value=8.9e-12 Score=105.92 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=61.5
Q ss_pred CCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHH
Q 003933 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVI 270 (785)
Q Consensus 198 ~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI 270 (785)
..++.+|.||.+++|.|||++|++||+|+++|||+|+|.++. ..+|.|+|+|+.+.|++|+++|++++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-----~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-----EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-----SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-----CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999999998653 25689999999999999999999874
No 52
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.19 E-value=3.5e-11 Score=107.98 Aligned_cols=75 Identities=17% Similarity=0.214 Sum_probs=66.6
Q ss_pred CCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhc
Q 003933 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (785)
Q Consensus 196 ~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~ 274 (785)
....++++|.||.+++++|||++|++||+|+++|||+|+|..+.+ ..+|.|+|+|+.++|++|+++|+.++++..
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~----~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA----PDPNCVTVTGLPENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC----SCTTEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC----CCCcEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 345688999999999999999999999999999999999986532 246899999999999999999999998864
No 53
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.19 E-value=1.9e-11 Score=111.15 Aligned_cols=90 Identities=13% Similarity=0.217 Sum_probs=79.0
Q ss_pred ccccchhhhhhhcccchhhhccCCCCCCCCCCCCCeEEEEEecCCccceeecCCchHHHHHHHH-hCCeEEEccCCCCCC
Q 003933 165 ETVKEEESVEPSNVVPQQVVDNSKSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYN-SGAKIQITRDADADP 243 (785)
Q Consensus 165 ~i~g~~esVE~A~~lI~~ii~~~~~~~p~~~~~~~~t~~IlVP~~~VG~IIGk~G~tIK~Iqee-TGAkI~I~k~~d~~p 243 (785)
.+.|.++.|++|+..|..++.+ .++.+|.||..+++.|||++|++||+|+++ ++++|.|.++
T Consensus 4 ~i~G~~~~V~~A~~~i~~~~~~------------~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~----- 66 (102)
T 2ctf_A 4 GSSGEPEKLGQALTEVYAKANS------------FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEG----- 66 (102)
T ss_dssp CCCCCCCCCCCSCCCCCCCCCC------------CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSS-----
T ss_pred ccCcCHHHHHHHHHHHHHHhcC------------eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCC-----
Confidence 4578899999999998877621 278999999999999999999999999997 5999999852
Q ss_pred CCCCcceEecccHHHHHHHHHHHHHHHHhhc
Q 003933 244 HAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (785)
Q Consensus 244 ~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~ 274 (785)
++.|+|+|..+.|++|+.+|..++++..
T Consensus 67 ---~~~ItI~G~~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 67 ---EDKITLEGPTEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp ---SCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999998763
No 54
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.17 E-value=9.9e-13 Score=119.63 Aligned_cols=90 Identities=17% Similarity=0.297 Sum_probs=74.0
Q ss_pred EecccHHHHHHHHHHHHHHHHhhccCCCCcccccccchhhccCCccEEEEEecCCccceeecCCchHHHHHHHH-hCCeE
Q 003933 251 EIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTR-SGARI 329 (785)
Q Consensus 251 ~I~Gt~e~V~kA~~lI~elI~e~~~gg~p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~-TGArI 329 (785)
.|+|+.++|.+|+++|.++++ ...+.+|.||..+++.||||+|++||+|+++ ++|+|
T Consensus 4 ~i~G~~~~V~~A~~~i~~~~~----------------------~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I 61 (102)
T 2ctf_A 4 GSSGEPEKLGQALTEVYAKAN----------------------SFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHI 61 (102)
T ss_dssp CCCCCCCCCCCSCCCCCCCCC----------------------CCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEE
T ss_pred ccCcCHHHHHHHHHHHHHHhc----------------------CeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEE
Confidence 467788888877777665442 1257899999999999999999999999997 59999
Q ss_pred EEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhccc
Q 003933 330 QVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTV 372 (785)
Q Consensus 330 qI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~~~ 372 (785)
. | ++ .++.|+|+|+.+.|++|+.+|+.++++..
T Consensus 62 ~-f-p~--------~~~~ItI~G~~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 62 E-F-TE--------GEDKITLEGPTEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp E-E-CS--------SSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred E-e-CC--------CCCEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 8 3 22 36799999999999999999999987643
No 55
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.09 E-value=8.8e-11 Score=105.44 Aligned_cols=73 Identities=22% Similarity=0.426 Sum_probs=63.5
Q ss_pred CCccEEEEEecCCccceeecCCchHHHHHHHHh-CCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhcc
Q 003933 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRS-GARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 371 (785)
Q Consensus 293 ~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~T-GArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~~ 371 (785)
....+..|.||.++++.|||++|++||+|+++| ||+|.| ++ +.+..+.|+|+|+.+.|++|+++|++++++.
T Consensus 14 ~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i--~~-----~g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 14 ANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHF--PV-----EGSGSDTVVIRGPSSDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp CSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEEC--CC-----TTTTCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred hhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEe--CC-----CCCCcceEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 456788999999999999999999999999999 999993 22 2345779999999999999999999999864
Q ss_pred c
Q 003933 372 V 372 (785)
Q Consensus 372 ~ 372 (785)
.
T Consensus 87 e 87 (95)
T 2ctj_A 87 Q 87 (95)
T ss_dssp S
T ss_pred h
Confidence 4
No 56
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.97 E-value=4.9e-10 Score=100.55 Aligned_cols=74 Identities=23% Similarity=0.356 Sum_probs=66.1
Q ss_pred CCCCeEEEEEecCCccceeecCCchHHHHHHHHh-CCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhc
Q 003933 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNS-GAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (785)
Q Consensus 196 ~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeT-GAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~ 274 (785)
.+..++..|.||.++++.|||++|++||+|+++| ||+|+|.++. +..+.|+|+|..+.|++|+++|++++++..
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g-----~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG-----SGSDTVVIRGPSSDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT-----TTCCEEEEESCHHHHHHHHHHHHHHHHHHS
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC-----CCcceEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 4556789999999999999999999999999999 9999998642 346789999999999999999999998864
No 57
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.89 E-value=5.5e-10 Score=99.25 Aligned_cols=72 Identities=24% Similarity=0.327 Sum_probs=60.4
Q ss_pred CCccEEEEEecCCccceeecCCchHHHHHHHHhCCe-EEEecCCCCCCCCCCCccEEEEEc-CHHHHHHHHHHHHHHHhc
Q 003933 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGAR-IQVLIPQHLPEGDGSKERIVRVTG-DMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 293 ~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGAr-IqI~i~~~lP~~~~s~er~VtIsG-~~eqVe~Ak~lI~~ll~~ 370 (785)
.......|.|+.+++|.|||++|++||+|+++|||+ |.| . + ++.+|+|.| +.+.+++|+++|+.+.+.
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI-~-e--------ddG~V~I~g~~~ea~~~A~~~I~~ie~~ 81 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIEL-D-E--------DTGTFRIYGESADAVKKARGFLEFVEDF 81 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEE-E-T--------TTTEEEEEESSHHHHHHHHHHHSCCCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEE-E-c--------CCCEEEEEECCHHHHHHHHHHHHhhheE
Confidence 345678999999999999999999999999999998 995 2 1 258999999 699999999999876654
Q ss_pred ccCC
Q 003933 371 TVRP 374 (785)
Q Consensus 371 ~~r~ 374 (785)
...+
T Consensus 82 ~~vp 85 (91)
T 2cpq_A 82 IQVP 85 (91)
T ss_dssp CCCC
T ss_pred EecC
Confidence 4333
No 58
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=4.6e-09 Score=97.91 Aligned_cols=76 Identities=12% Similarity=0.141 Sum_probs=58.3
Q ss_pred ccEEEEEecC-------CccceeecCCchHHHHHHHHhCCeEEEecCCCC------CCCCCCCccEEEEEcC-HHHHHHH
Q 003933 295 AEQVEIKVPN-------EKVGLIIGRGGETIKGLQTRSGARIQVLIPQHL------PEGDGSKERIVRVTGD-MRQIEIA 360 (785)
Q Consensus 295 ~~~~~i~VP~-------~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~l------P~~~~s~er~VtIsG~-~eqVe~A 360 (785)
..+.+|.||- +++|+|||++|.|||+|+++|||+|.|. .+.. ...+..++-.|.|++. .+.|++|
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~-G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLR-GKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEE-SBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEe-cCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 4566777665 4899999999999999999999999963 2211 1112334567889886 8999999
Q ss_pred HHHHHHHHhcc
Q 003933 361 QEMIKEVLSQT 371 (785)
Q Consensus 361 k~lI~~ll~~~ 371 (785)
++||++||...
T Consensus 90 ~~~Ie~Ll~~v 100 (119)
T 2yqr_A 90 KKLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhch
Confidence 99999999753
No 59
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.85 E-value=5.7e-09 Score=98.91 Aligned_cols=77 Identities=25% Similarity=0.370 Sum_probs=61.3
Q ss_pred CccEEEEEecCC------ccceeecCCchHHHHHHHHhCCeEEEecCCCC------------CCCCCCCccEEEEEcC-H
Q 003933 294 AAEQVEIKVPNE------KVGLIIGRGGETIKGLQTRSGARIQVLIPQHL------------PEGDGSKERIVRVTGD-M 354 (785)
Q Consensus 294 ~~~~~~i~VP~~------~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~l------------P~~~~s~er~VtIsG~-~ 354 (785)
...+.+|.||.+ ++|+|||.+|.|||+|+++|||+|.|. .+.. +.....++-.|.|+++ .
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~Ir-gkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIR-GKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEE-ESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEec-CCcccccccccccccccccccCCCeEEEEEECCH
Confidence 456788999986 999999999999999999999999963 2210 0112334678999996 8
Q ss_pred HHHHHHHHHHHHHHhcc
Q 003933 355 RQIEIAQEMIKEVLSQT 371 (785)
Q Consensus 355 eqVe~Ak~lI~~ll~~~ 371 (785)
+.|++|+++|+++|...
T Consensus 84 e~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 84 ENVKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 89999999999999763
No 60
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.84 E-value=3e-09 Score=102.39 Aligned_cols=72 Identities=28% Similarity=0.451 Sum_probs=61.3
Q ss_pred EEEEecCCccceeecCCchHHHHHHHHhCC-eEEEccCCCCCCCCCCc--ceEecccHHHHHHHHHHHHHHHHhh
Q 003933 202 RKIEVPNNKVGVLIGKAGDTIRYLQYNSGA-KIQITRDADADPHAATR--PVEIIGTLSNIDKAEKLINAVIAEA 273 (785)
Q Consensus 202 ~~IlVP~~~VG~IIGk~G~tIK~IqeeTGA-kI~I~k~~d~~p~s~eR--iV~I~Gt~e~V~kA~~lI~elI~e~ 273 (785)
.+|.||.+.+|++|||+|++||.|++.||| +|+|..+.+......++ .|+|+|+.++|.+|+.||+.+|++.
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNYL 143 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHTC
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999997 99998765432112233 4899999999999999999999763
No 61
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.83 E-value=4e-09 Score=99.95 Aligned_cols=76 Identities=25% Similarity=0.443 Sum_probs=62.4
Q ss_pred CCeEEEEEecCC------ccceeecCCchHHHHHHHHhCCeEEEccCCCCC-------------CCCCCcceEecc-cHH
Q 003933 198 STMSRKIEVPNN------KVGVLIGKAGDTIRYLQYNSGAKIQITRDADAD-------------PHAATRPVEIIG-TLS 257 (785)
Q Consensus 198 ~~~t~~IlVP~~------~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~-------------p~s~eRiV~I~G-t~e 257 (785)
.+++.+|.||.+ +||+|||.+|+|||+|+++|||+|.|..+.... ....+..|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 468899999988 899999999999999999999999998642111 012245677887 789
Q ss_pred HHHHHHHHHHHHHHhh
Q 003933 258 NIDKAEKLINAVIAEA 273 (785)
Q Consensus 258 ~V~kA~~lI~elI~e~ 273 (785)
.|++|+++|.+||++.
T Consensus 85 ~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999863
No 62
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.76 E-value=1.7e-08 Score=94.04 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=59.4
Q ss_pred CCeEEEEEecCC-------ccceeecCCchHHHHHHHHhCCeEEEccCCCCC-------CCCCCcceEecc-cHHHHHHH
Q 003933 198 STMSRKIEVPNN-------KVGVLIGKAGDTIRYLQYNSGAKIQITRDADAD-------PHAATRPVEIIG-TLSNIDKA 262 (785)
Q Consensus 198 ~~~t~~IlVP~~-------~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~-------p~s~eRiV~I~G-t~e~V~kA 262 (785)
..++.+|.||.+ ++|+|||++|.+||+|+++|||+|.|..+.... ....+..|.|++ +.+.|++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 357788888875 689999999999999999999999998442110 001234566665 89999999
Q ss_pred HHHHHHHHHhh
Q 003933 263 EKLINAVIAEA 273 (785)
Q Consensus 263 ~~lI~elI~e~ 273 (785)
+++|.+||++.
T Consensus 90 ~~~Ie~Ll~~v 100 (119)
T 2yqr_A 90 KKLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhch
Confidence 99999999864
No 63
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.69 E-value=6.8e-09 Score=92.22 Aligned_cols=66 Identities=23% Similarity=0.394 Sum_probs=58.8
Q ss_pred CCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCe-EEEccCCCCCCCCCCcceEecc-cHHHHHHHHHHHHHH
Q 003933 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAK-IQITRDADADPHAATRPVEIIG-TLSNIDKAEKLINAV 269 (785)
Q Consensus 196 ~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAk-I~I~k~~d~~p~s~eRiV~I~G-t~e~V~kA~~lI~el 269 (785)
....+...|.|+.+++|.|||++|++||+|+++|||+ |.|..+ +..|+|.| +.+.+++|+++|..+
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed--------dG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED--------TGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT--------TTEEEEEESSHHHHHHHHHHHSCC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC--------CCEEEEEECCHHHHHHHHHHHHhh
Confidence 4456899999999999999999999999999999998 999742 46899999 899999999988764
No 64
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.64 E-value=2e-08 Score=110.13 Aligned_cols=74 Identities=14% Similarity=0.249 Sum_probs=61.5
Q ss_pred CCccEEEEEecCCccceeecCCc--hHHHHHHHHhCCeEEEecCCCC-CCCCCCCccEEEEEcCHHHHHHHHHHHHHH
Q 003933 293 GAAEQVEIKVPNEKVGLIIGRGG--ETIKGLQTRSGARIQVLIPQHL-PEGDGSKERIVRVTGDMRQIEIAQEMIKEV 367 (785)
Q Consensus 293 ~~~~~~~i~VP~~~vG~VIGKgG--etIK~Iq~~TGArIqI~i~~~l-P~~~~s~er~VtIsG~~eqVe~Ak~lI~~l 367 (785)
...++++|.||..++..||||+| ++||+|+++|||+|+ |-+++. ..........|+|+|..+.|++||++|+++
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~-fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQ-LPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEE-CCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEE-CCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 35678899999999999999999 999999999999999 433320 111234567899999999999999999985
No 65
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.48 E-value=8.1e-08 Score=98.53 Aligned_cols=65 Identities=20% Similarity=0.398 Sum_probs=57.2
Q ss_pred ccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcC-----HHHHHHHHHHHHHHHh
Q 003933 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGD-----MRQIEIAQEMIKEVLS 369 (785)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~-----~eqVe~Ak~lI~~ll~ 369 (785)
....+|.||.+++|.|||++|++||.|+++|||+|+| . ..++.|+|.++ ++.|++|+++|++++.
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I-~---------~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITI-D---------SETGEVWITSTKETEDPLAVWKARDIVLAIGR 102 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEE-C---------TTTCEEEEEECTTCCSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEE-E---------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 4567999999999999999999999999999999994 2 13678999986 5999999999999884
No 66
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.44 E-value=1.3e-07 Score=90.30 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=56.4
Q ss_pred eEEEEEecCCc------cceeecCCchHHHHHHHHhCCeEEEccCCCCCC---------------CCCCcceEecc-cHH
Q 003933 200 MSRKIEVPNNK------VGVLIGKAGDTIRYLQYNSGAKIQITRDADADP---------------HAATRPVEIIG-TLS 257 (785)
Q Consensus 200 ~t~~IlVP~~~------VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p---------------~s~eRiV~I~G-t~e 257 (785)
++.+|.||.+. ||+|||.+|+|||+|+++|||+|.|..+..... ......|.|++ +.+
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 56789998654 999999999999999999999999997542110 11224677887 333
Q ss_pred -----HHHHHHHHHHHHHHh
Q 003933 258 -----NIDKAEKLINAVIAE 272 (785)
Q Consensus 258 -----~V~kA~~lI~elI~e 272 (785)
.|.+|+++|.++|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 799999999999864
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.40 E-value=2.5e-07 Score=88.37 Aligned_cols=73 Identities=29% Similarity=0.352 Sum_probs=55.0
Q ss_pred EEEEEecC------CccceeecCCchHHHHHHHHhCCeEEEecCCCCCC---------C-----CCCCccEEEEEcC-H-
Q 003933 297 QVEIKVPN------EKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPE---------G-----DGSKERIVRVTGD-M- 354 (785)
Q Consensus 297 ~~~i~VP~------~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~---------~-----~~s~er~VtIsG~-~- 354 (785)
+.+|.||. +++|+|||.+|.|||+|+++|||+|.|. .+..-. + ..++...|.|++. .
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~Ir-GkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVR-GKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEE-STTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEe-cCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 45677775 6699999999999999999999999963 332110 0 1234457889995 3
Q ss_pred ----HHHHHHHHHHHHHHhc
Q 003933 355 ----RQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 355 ----eqVe~Ak~lI~~ll~~ 370 (785)
..|++|+++|+++|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 2799999999999864
No 68
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.32 E-value=6e-07 Score=104.86 Aligned_cols=63 Identities=25% Similarity=0.394 Sum_probs=54.7
Q ss_pred ccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHH
Q 003933 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGD-MRQIEIAQEMIKEVL 368 (785)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~-~eqVe~Ak~lI~~ll 368 (785)
.....|.||.++++.|||+||++||.|+++|||+|.| . ++-+|.|.++ .+.+++|+++|++++
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I-~----------d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQ-V----------DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEE-C----------SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEE-c----------CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 4577899999999999999999999999999999995 2 2468999997 789999999998876
No 69
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.10 E-value=2.4e-06 Score=85.79 Aligned_cols=64 Identities=27% Similarity=0.368 Sum_probs=57.3
Q ss_pred EEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEE-----cCHHHHHHHHHHHHHHHhc
Q 003933 297 QVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVT-----GDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 297 ~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIs-----G~~eqVe~Ak~lI~~ll~~ 370 (785)
++++.||.+.+|.|||++|++||.|++++||+|+| . +.++.|+|. |++..|.+|+.+|..++..
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~i-d---------~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rg 73 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITV-D---------TENSMVIVEPEAEGIPPVNLMKAAEVVKAISLG 73 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEE-E---------TTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHT
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEE-E---------cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999999999994 2 247889999 8999999999999887764
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.10 E-value=8.1e-07 Score=103.76 Aligned_cols=67 Identities=19% Similarity=0.390 Sum_probs=57.3
Q ss_pred CCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecc-cHHHHHHHHHHHHHHHH
Q 003933 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIG-TLSNIDKAEKLINAVIA 271 (785)
Q Consensus 196 ~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~G-t~e~V~kA~~lI~elI~ 271 (785)
......+.|.||.++++.|||++|++||+|+++|||+|.|.. +-.|.|.+ +.+.+++|+++|.++++
T Consensus 563 ~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d---------~G~V~I~~~~~~~~~~A~~~I~~i~~ 630 (630)
T 3u1k_A 563 ENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD---------EETFSVFAPTPSAMHEARDFITEICK 630 (630)
T ss_dssp TTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS---------SSEEEEEESSHHHHHHHHHHTTC---
T ss_pred ccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC---------CcEEEEEeCCHHHHHHHHHHHHHHhC
Confidence 456789999999999999999999999999999999999974 34788887 57899999999988763
No 71
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.91 E-value=5.7e-06 Score=79.45 Aligned_cols=103 Identities=20% Similarity=0.302 Sum_probs=76.1
Q ss_pred eEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhccCCCC
Q 003933 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSP 279 (785)
Q Consensus 200 ~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~~gg~p 279 (785)
-...|+|....+|..||++|++|+.|.+++|-+|.|...++ + +.++|+... +|
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~------d------------------~~~fI~naL---sP 88 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSS------D------------------LERIVKNLF---PG 88 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCS------S------------------HHHHHHHHS---TT
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCC------C------------------HHHHHHHhc---CC
Confidence 47799999999999999999999999999999999986533 1 233333321 12
Q ss_pred cccccccchhhccCCccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEE
Q 003933 280 SLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQV 331 (785)
Q Consensus 280 ~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI 331 (785)
..+..-.. ...+......+.|+.+..++.|||+|.|||-+.+-||.+|.|
T Consensus 89 A~V~~V~i--~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI 138 (144)
T 2cxc_A 89 VKIESINV--RERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGV 138 (144)
T ss_dssp SCEEEEEE--EEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCE
T ss_pred ceEEEEEE--eecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCc
Confidence 21111100 000234567889999999999999999999999999999885
No 72
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.86 E-value=3.5e-06 Score=99.58 Aligned_cols=70 Identities=29% Similarity=0.450 Sum_probs=14.6
Q ss_pred CCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecc-cHHHHHHHHHHHHHHHHhhc
Q 003933 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIG-TLSNIDKAEKLINAVIAEAD 274 (785)
Q Consensus 196 ~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~G-t~e~V~kA~~lI~elI~e~~ 274 (785)
........|.|+.++++.|||++|.+||.|.++||++|.|..+ -.|.|.+ +.+.+++|+++|..++.+..
T Consensus 566 ~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~dd---------G~v~I~~~~~~~~~~A~~~i~~i~~~~~ 636 (726)
T 4aid_A 566 DFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD---------GVVKVSASDGAKIKAAIDWIKSITDEAE 636 (726)
T ss_dssp SSCCC----------------------------------------------------CCSCHHHHHHHHHC---------
T ss_pred ccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECC---------ceEEEEeCCHHHHHHHHHHHHHHhhhhc
Confidence 4456788999999999999999999999999999999999743 3566666 78999999999999987653
No 73
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.85 E-value=2.4e-05 Score=73.70 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=59.4
Q ss_pred cEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 296 EQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 296 ~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
..+.|.|..++++.|||++|+.|++|+..|.+.|+| +. .+.+..-.|+|.|+...-.+|+.||.++++-
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV-~~-----~~s~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHV-NV-----WGPERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEE-EC-----CCTTSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEE-ec-----cCCCCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999995 32 2344678899999999999999999988764
No 74
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.82 E-value=9.3e-06 Score=95.97 Aligned_cols=67 Identities=24% Similarity=0.514 Sum_probs=12.9
Q ss_pred ccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHHhccc
Q 003933 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGD-MRQIEIAQEMIKEVLSQTV 372 (785)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~-~eqVe~Ak~lI~~ll~~~~ 372 (785)
.....|.|+.++++.|||+||++||.|+++|||+|.| . ++.+|.|.+. .+.+++|+++|+.++.+..
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi-~----------ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~ 636 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDI-N----------DDGVVKVSASDGAKIKAAIDWIKSITDEAE 636 (726)
T ss_dssp CC------------------------------------------------------CCSCHHHHHHHHHC---------
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeE-E----------CCceEEEEeCCHHHHHHHHHHHHHHhhhhc
Confidence 4466889999999999999999999999999999994 2 2457888887 8899999999999887643
No 75
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.42 E-value=0.0002 Score=67.56 Aligned_cols=70 Identities=13% Similarity=0.183 Sum_probs=60.9
Q ss_pred CeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHh
Q 003933 199 TMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAE 272 (785)
Q Consensus 199 ~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e 272 (785)
..-+.|.|...+++.|||++|+.|+.|+..|.+.|+|.+-. .+..-.|+|.|+...-.+|+.+|..+...
T Consensus 55 ~dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~----s~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 55 EDPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG----PERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp SSCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC----TTSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC----CCCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999998642 23467899999999999999999988764
No 76
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.99 E-value=0.00088 Score=69.62 Aligned_cols=95 Identities=25% Similarity=0.385 Sum_probs=67.5
Q ss_pred CccceeecCCchHHHHH-HHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhccCCCCcccccccc
Q 003933 209 NKVGVLIGKAGDTIRYL-QYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLA 287 (785)
Q Consensus 209 ~~VG~IIGk~G~tIK~I-qeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~~gg~p~~~~~g~~ 287 (785)
+-||..||++|.+|+.| ++-.|-+|.|...++ + ...+|...|. |..+..-..
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~------d--------------p~~fi~nals-------PA~V~~V~i 178 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD------D--------------PARFVANALS-------PAKVVSVSV 178 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS------S--------------HHHHHHHHTT-------TSCCSEEEE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecC------C--------------HHHHHHhccC-------CcceEEEEE
Confidence 34899999999999999 778899999986543 1 1222333222 221111100
Q ss_pred hhhccCCccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEec
Q 003933 288 TAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLI 333 (785)
Q Consensus 288 ~~~~~~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i 333 (785)
.........+.|+.+..++.|||+|.|||...+-||++|.|..
T Consensus 179 ---~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 221 (251)
T 2asb_A 179 ---IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 221 (251)
T ss_dssp ---EETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred ---EcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceE
Confidence 0112357889999999999999999999999999999999743
No 77
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.90 E-value=0.001 Score=72.65 Aligned_cols=95 Identities=24% Similarity=0.382 Sum_probs=68.7
Q ss_pred CccceeecCCchHHHHHHHHh-CCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhccCCCCcccccccc
Q 003933 209 NKVGVLIGKAGDTIRYLQYNS-GAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLA 287 (785)
Q Consensus 209 ~~VG~IIGk~G~tIK~IqeeT-GAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~~gg~p~~~~~g~~ 287 (785)
+-||..||++|.+|+.|.++. |-+|.|...++ + ...+|...|. |..+..-..
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~------d--------------p~~fi~nals-------PA~V~~V~~ 301 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD------D--------------PARFVANALS-------PAKVVSVSV 301 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS------S--------------HHHHHHHHTT-------TSCCSEEEE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCC------C--------------HHHHHHHhcC-------CcceeEEEE
Confidence 358999999999999999999 99999986543 1 1223333322 221111100
Q ss_pred hhhccCCccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEec
Q 003933 288 TAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLI 333 (785)
Q Consensus 288 ~~~~~~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i 333 (785)
.........+.|+.+..++.|||+|.|||-..+-||++|.|..
T Consensus 302 ---~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~ 344 (366)
T 1k0r_A 302 ---IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRG 344 (366)
T ss_dssp ---EETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEE
T ss_pred ---EcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeE
Confidence 0122457889999999999999999999999999999999754
No 78
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=96.87 E-value=0.00037 Score=82.72 Aligned_cols=66 Identities=23% Similarity=0.433 Sum_probs=0.0
Q ss_pred ccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHHhcc
Q 003933 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGD-MRQIEIAQEMIKEVLSQT 371 (785)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~-~eqVe~Ak~lI~~ll~~~ 371 (785)
.....|.|+.++++.|||++|.+||.|.++||++|.| . .+..|+|.+. .+.+++|+++|+.++.+.
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI-~----------~dg~v~I~~~~~~~~~~a~~~i~~i~~~~ 625 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEI-E----------DDGTVKIAATDGEKAKHAIRRIEEITAEI 625 (723)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEe-c----------CCccEEEecCCHHHHHHHHHHHHHHhhhh
Confidence 4456789999999999999999999999999999984 1 1467888876 678899999998876543
No 79
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=96.58 E-value=0.00036 Score=82.78 Aligned_cols=69 Identities=26% Similarity=0.362 Sum_probs=0.0
Q ss_pred CCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecc-cHHHHHHHHHHHHHHHHhh
Q 003933 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIG-TLSNIDKAEKLINAVIAEA 273 (785)
Q Consensus 196 ~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~G-t~e~V~kA~~lI~elI~e~ 273 (785)
........|.|+.++++.|||++|.+|+.|.++||++|.|.. +..|+|.+ +.+.+++|+++|..++.+.
T Consensus 556 ~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~---------dg~v~I~~~~~~~~~~a~~~i~~i~~~~ 625 (723)
T 3cdi_A 556 EFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED---------DGTVKIAATDGEKAKHAIRRIEEITAEI 625 (723)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred ccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC---------CccEEEecCCHHHHHHHHHHHHHHhhhh
Confidence 445678899999999999999999999999999999998874 23566665 6778888988888877654
No 80
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=96.45 E-value=0.00029 Score=83.94 Aligned_cols=62 Identities=23% Similarity=0.414 Sum_probs=22.8
Q ss_pred cEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHH
Q 003933 296 EQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGD-MRQIEIAQEMIKEVL 368 (785)
Q Consensus 296 ~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~-~eqVe~Ak~lI~~ll 368 (785)
....|.||.++++.|||++|++||.|+++||++|.| . .+..|+|+.. .+.+++|+++|+.++
T Consensus 598 ~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI-~----------~dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 598 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITI-E----------DDGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp BCCCC------------------CTTCCCCCSCC-------------------CCCBSSHHHHCC---------
T ss_pred eeEEEEEChHHeehcccccceeeehhhHhhCCEEEe-c----------CCceEEEecCCHHHHHHHHHHHHHhc
Confidence 345688999999999999999999999999999994 1 1568888886 678888988888776
No 81
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=96.27 E-value=0.0053 Score=66.74 Aligned_cols=94 Identities=23% Similarity=0.390 Sum_probs=67.6
Q ss_pred CccceeecCCchHHHHHHHHh-CCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhccCCCCcccccccc
Q 003933 209 NKVGVLIGKAGDTIRYLQYNS-GAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLA 287 (785)
Q Consensus 209 ~~VG~IIGk~G~tIK~IqeeT-GAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~~gg~p~~~~~g~~ 287 (785)
+-+|..||.+|.+|+.|.++. |-+|.|..-++. ...+|.... +|..+..-.-
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~d------------------------~~~fi~nal---~Pa~v~~v~~ 297 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDD------------------------PKQLIANAL---APATVIEVEI 297 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSS------------------------HHHHHHHHT---CSSCCSEEEE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCCC------------------------HHHHHHHhc---CccEEEEEEE
Confidence 348999999999999999998 888888764321 223333321 1222211100
Q ss_pred hhhccCCccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEe
Q 003933 288 TAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVL 332 (785)
Q Consensus 288 ~~~~~~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~ 332 (785)
..+......+.|+.+..++.|||+|.|||...+-||++|.|.
T Consensus 298 ---~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~ 339 (344)
T 1hh2_P 298 ---LDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 (344)
T ss_dssp ---EETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred ---EcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEecee
Confidence 012345788999999999999999999999999999999974
No 82
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=95.96 E-value=0.00034 Score=83.34 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=24.8
Q ss_pred CCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecc-cHHHHHHHHHHHHHHH
Q 003933 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIG-TLSNIDKAEKLINAVI 270 (785)
Q Consensus 196 ~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~G-t~e~V~kA~~lI~elI 270 (785)
........|.||.++++.|||++|.+||.|+++||+.|.|.. +..|+|+. +.+.+++|+++|..++
T Consensus 594 ~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~---------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 594 PNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED---------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp TTSCBCCCC------------------CTTCCCCCSCC-----------------CCCBSSHHHHCC---------
T ss_pred ccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC---------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 345666788999999999999999999999999999999873 34666665 6778888888887765
No 83
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=88.29 E-value=0.26 Score=47.19 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=34.8
Q ss_pred cEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEe
Q 003933 296 EQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVL 332 (785)
Q Consensus 296 ~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~ 332 (785)
.++.|.|....+|..||++|.+||.|+++.|-+|.|+
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV 72 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVV 72 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEE
Confidence 6788999999999999999999999999999999974
No 84
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=84.32 E-value=15 Score=33.70 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=32.2
Q ss_pred hHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhh
Q 003933 220 DTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (785)
Q Consensus 220 ~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~ 273 (785)
+.|++.++-.|+...... ..+.+|+|+|-+++|.+-+.+-.+.|+.+
T Consensus 22 emirqarkfagtvtytl~-------gn~l~i~itgvpeqvrkelakeaerl~~e 68 (170)
T 4hhu_A 22 EMIRQARKFAGTVTYTLS-------GNRLVIVITGVPEQVRKELAKEAERLKAE 68 (170)
T ss_dssp HHHHHHHHTTCEEEEEEE-------TTEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcceEEEEEe-------CCEEEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 456666666666443332 22568899999999999887777776654
No 85
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=84.03 E-value=0.48 Score=41.86 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=24.9
Q ss_pred ccEEEEEecCCccceeecCCchHHHHHHH
Q 003933 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQT 323 (785)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGKgGetIK~Iq~ 323 (785)
...++|.|...+-|.||||+|+.|++|+.
T Consensus 34 ~~~i~I~I~tarPg~vIGkkG~~Ie~L~~ 62 (92)
T 1wh9_A 34 PTRTEIIILATRTQNVLGEKGRRIRELTA 62 (92)
T ss_dssp SSCEEEEEEESCHHHHHCGGGHHHHHHHH
T ss_pred CCeEEEEEEeCCCceEEcCCcHHHHHHHH
Confidence 45678999999999999999998888764
No 86
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=83.09 E-value=0.39 Score=46.34 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=27.0
Q ss_pred ccEEEEEecCCccceeecCCchHHHHHHHHhC
Q 003933 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSG 326 (785)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TG 326 (785)
..++.|.|-.+..|+||||.|.|++.||--+.
T Consensus 32 ~~~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 32 PGVLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp TTEEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred CCEEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 34677888899999999999999999986653
No 87
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=81.56 E-value=0.83 Score=46.76 Aligned_cols=64 Identities=17% Similarity=0.379 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHhhccCCCCcccccccchhhccCCccEEEEEecCCccceeecCCchHHHHHHHHhCCeEE
Q 003933 259 IDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQ 330 (785)
Q Consensus 259 V~kA~~lI~elI~e~~~gg~p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIq 330 (785)
.++|.+.|.++|...... ..+.- ........+.|.|-.+..|+||||.|++++.||--+..-|.
T Consensus 63 ~~~a~~~L~~ll~~m~~~---~~i~~-----~~~~~~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 63 QDKAIEFLEQVFDAMNMA---VDISV-----EYNETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp HHHHHHHHHHHHHHTTCC---CEEEE-----EEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC---eEEEE-----EEecCCCEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 457888888888876321 11100 00012346677787888999999999999999988775554
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=80.50 E-value=0.27 Score=47.40 Aligned_cols=92 Identities=14% Similarity=0.030 Sum_probs=50.8
Q ss_pred hhhcccchhhhccCCCCCC-CCC-CCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceE
Q 003933 174 EPSNVVPQQVVDNSKSDDP-SST-DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVE 251 (785)
Q Consensus 174 E~A~~lI~~ii~~~~~~~p-~~~-~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~ 251 (785)
+++++.+.+++.....+.. ... .....++.|.|-....|.||||.|.|++.|+--+..- +.+..+ ..-+|-
T Consensus 5 ~~~~~~L~~il~~m~~~~~~i~v~~~~~~~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~--vn~~~~-----~~V~LD 77 (152)
T 2pt7_G 5 HEIKQELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLFNW--IHPTYG-----YSIRLE 77 (152)
T ss_dssp HHHHHHHHHHTTTTTCCEEEEEEEEEETTEEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHH--HHHHHS-----CEEEEE
T ss_pred HHHHHHHHHHHHHcCCCceEEEEEEecCCEEEEEEecCCcceEECCCCcchHHHHHHHHHH--hhhcCC-----ceEEEE
Confidence 4455555555543333211 100 1122356777778899999999999999998655221 121100 112345
Q ss_pred ecccHHHHHHHHHHHHHHHHh
Q 003933 252 IIGTLSNIDKAEKLINAVIAE 272 (785)
Q Consensus 252 I~Gt~e~V~kA~~lI~elI~e 272 (785)
|.+-.+.-...++.+...|.+
T Consensus 78 ve~YRerReetL~~lA~~~A~ 98 (152)
T 2pt7_G 78 ISTFLQNQEKVMDTQLQSVIM 98 (152)
T ss_dssp ETTHHHHHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHHHHHHH
Confidence 566666666666655555554
No 89
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=78.57 E-value=1.4 Score=45.62 Aligned_cols=59 Identities=20% Similarity=0.296 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcccccccchhhccCCccEEEEEecCCccceeecCCchHHHHHHHH
Q 003933 257 SNIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324 (785)
Q Consensus 257 e~V~kA~~lI~elI~e~~~gg~p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~ 324 (785)
+.|..++ |+++|+..... .|++...-......++|.|-..+-|.||||+|+.|++|+..
T Consensus 17 ~~l~ed~--Ir~~l~~~l~~-------agis~IeI~r~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 17 DGVFNAE--LHSFFSKSLQD-------AGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp HHHHHHH--HHHHHHHHCCS-------SCEEEECCEECSSCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred hHhHHHH--HHHHHHHHHHH-------CCcceEEEEECCCeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 3455555 77777765321 12222211123457889999999999999999999997754
No 90
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=77.73 E-value=1.2 Score=45.55 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcccccccchhhccCCccEEEEEecCCccceeecCCchHHHHHHH
Q 003933 257 SNIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQT 323 (785)
Q Consensus 257 e~V~kA~~lI~elI~e~~~gg~p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~ 323 (785)
++|.+|+ |+++|++.... .+++...-......++|.|...+-|.|||++|+.|++|+.
T Consensus 14 dg~~~a~--Ire~l~k~l~~-------agis~IeI~R~~~~i~I~I~tarPg~vIGkkG~~I~~L~~ 71 (227)
T 3iz6_B 14 DGVFYAE--LNEMLTRELAE-------DGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTS 71 (227)
T ss_dssp HHHHHHH--HHHHHHHHTSS-------CSSCCEECCEETTEECCEEECTTHHHHHCSSSSHHHHHHH
T ss_pred cCeehHH--HHHHHHHHHHh-------CCcceEEEEEcCCcEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 4566654 78888766321 1222111111245678899999999999999999988654
No 91
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=76.30 E-value=1.7 Score=45.16 Aligned_cols=40 Identities=30% Similarity=0.489 Sum_probs=36.9
Q ss_pred eEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCC
Q 003933 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDA 239 (785)
Q Consensus 200 ~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~ 239 (785)
.+..+.|+....++.|||+|.+|+...+-||.+|.|....
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 5789999999999999999999999999999999998654
No 92
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=75.65 E-value=1.6 Score=44.96 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=25.3
Q ss_pred ccEEEEEecCCccceeecCCchHHHHHHHH
Q 003933 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324 (785)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~ 324 (785)
...++|.|...+-|.||||+|..|++|+..
T Consensus 43 ~~~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 43 PTKTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp SSCEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred CCeEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 456788999999999999999999887643
No 93
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=66.86 E-value=28 Score=35.17 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=35.7
Q ss_pred eEEEEEecCCccceeecCCchHHHHHHHHh-CCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHH
Q 003933 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYNS-GAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAV 269 (785)
Q Consensus 200 ~t~~IlVP~~~VG~IIGk~G~tIK~IqeeT-GAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~el 269 (785)
.+.-|.+-...+..|+ ..|+.|-... +++|.+... ...|.|+|+.+.|++++++|..+
T Consensus 108 ~t~vi~L~~~~a~~l~----~~L~~l~~~~~~g~v~~d~~--------~N~Liv~g~~~~i~~i~~li~~l 166 (241)
T 3ezj_A 108 VTKVVPVRNVSVRELA----PILRQMIDSAGSGNVVNYDP--------SNVIMLTGRASVVERLTEVIQRV 166 (241)
T ss_dssp EEEEEECCSSCGGGTH----HHHHHHHHHHCSSCEEEEET--------TTEEEEEEEHHHHHHHHHHHHHH
T ss_pred EEEEEEecccCHHHHH----HHHHHHhCcCCcceEEEcCC--------ccEEEEECCHHHHHHHHHHHHHh
Confidence 4444445444454443 3455554443 346666543 34789999999999888877765
No 94
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=64.79 E-value=3.5 Score=45.01 Aligned_cols=41 Identities=29% Similarity=0.482 Sum_probs=37.4
Q ss_pred CeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCC
Q 003933 199 TMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDA 239 (785)
Q Consensus 199 ~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~ 239 (785)
.....+.|+....++.|||+|.+|+...+-||.+|.|....
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 45788999999999999999999999999999999998654
No 95
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=64.50 E-value=3.2 Score=41.99 Aligned_cols=32 Identities=28% Similarity=0.526 Sum_probs=26.3
Q ss_pred ccEEEEEecCCccceeecCCchHHHHHH----HHhC
Q 003933 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQ----TRSG 326 (785)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGKgGetIK~Iq----~~TG 326 (785)
...++|.|...+-|.|||++|..|++|+ +.++
T Consensus 39 ~~~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~ 74 (210)
T 3j20_C 39 PLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFG 74 (210)
T ss_dssp SSCCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSS
T ss_pred CCeEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhC
Confidence 4467888888999999999999998865 4566
No 96
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=64.31 E-value=7.6 Score=45.40 Aligned_cols=94 Identities=23% Similarity=0.344 Sum_probs=61.6
Q ss_pred eeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhccCCCCcccccccchhhcc
Q 003933 213 VLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQAS 292 (785)
Q Consensus 213 ~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~~gg~p~~~~~g~~~~~~~ 292 (785)
.++=.++..||+|-++...+|.|+.+.. +.- .-++|+++|.+++-++. +...+..
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~~~~~~~~~~~~--~~~~~~~--------- 104 (651)
T 3af5_A 50 EAIMKDGELIKDLAKVLKKRISVRPDPE-----------VLL---PPEEAEKLIFEIVPKEA--EITNIAF--------- 104 (651)
T ss_dssp C-----CCSHHHHHHHHTSCEEEECCGG-----------GSC---CHHHHHHHHHHHSCGGG--CCCEEEE---------
T ss_pred HHhhcccHHHHHHHHHhhceEEEeCChh-----------hcC---CHHHHHHHHHHhCCCcc--Cccceee---------
Confidence 3455778899999999999999986521 111 13578888888886642 1111110
Q ss_pred CCccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEe
Q 003933 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVL 332 (785)
Q Consensus 293 ~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~ 332 (785)
...+-+++|=..+-|+||||.|+++++|..+++-+..++
T Consensus 105 -~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 143 (651)
T 3af5_A 105 -DPSVGEVLIEAKKPGLVIGKNGETLRLITQKVKWAPKVV 143 (651)
T ss_dssp -ETTTTEEEEEESSTTTTSCTTSHHHHHHHHHHCSEEEEE
T ss_pred -cCCCceEEEEECCCCccccccchhHHHHhhccCcccccc
Confidence 011224555566668999999999999999999988864
No 97
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=63.25 E-value=4.2 Score=44.14 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=37.0
Q ss_pred CCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccC
Q 003933 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRD 238 (785)
Q Consensus 198 ~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~ 238 (785)
...+..+.|+....++.|||+|.+|+...+-||.+|.|...
T Consensus 301 ~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 301 ENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp TTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred CCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 34578899999999999999999999999999999999743
No 98
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=62.00 E-value=2.5 Score=43.63 Aligned_cols=30 Identities=20% Similarity=0.372 Sum_probs=25.8
Q ss_pred ccEEEEEecCCccceeecCCchHHHHHHHH
Q 003933 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324 (785)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~ 324 (785)
...++|.|-..+-|.||||+|..|++|+..
T Consensus 43 ~~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 43 PTRTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp TTEECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CCcEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 456788899999999999999999997754
No 99
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=60.71 E-value=1.5 Score=44.79 Aligned_cols=61 Identities=23% Similarity=0.353 Sum_probs=38.0
Q ss_pred hhhhcccchhhhccCCCCCCCCC--CCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeE
Q 003933 173 VEPSNVVPQQVVDNSKSDDPSST--DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKI 233 (785)
Q Consensus 173 VE~A~~lI~~ii~~~~~~~p~~~--~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI 233 (785)
.+.|...+..++.....+..... ....-.+.|.|.....|.||||+|.|++.|+.-+..-|
T Consensus 63 ~~~a~~~L~~ll~~m~~~~~i~~~~~~~~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~v 125 (225)
T 3gku_A 63 QDKAIEFLEQVFDAMNMAVDISVEYNETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVV 125 (225)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEEecCCCEEEEEEcCCccceeecCCCeEhHHHHHHHHHHH
Confidence 34566666666653333221110 11223456667677899999999999999998776433
No 100
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=59.77 E-value=46 Score=33.76 Aligned_cols=96 Identities=13% Similarity=0.148 Sum_probs=55.7
Q ss_pred CCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhccCCCCcccccccchhhccCCccEEEEEecCCccce
Q 003933 230 GAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGL 309 (785)
Q Consensus 230 GAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~~gg~p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~ 309 (785)
.++|.+... ...|.|+|+.+.|+++.++|..+=... ......|.+-+..+.-
T Consensus 139 ~g~v~~d~~--------tN~Liv~g~~~~i~~i~~li~~lD~p~--------------------~~~~~vi~l~~a~A~d 190 (246)
T 4e9j_A 139 YGHLAAVPS--------ANALIISDRSANIARIEDVIRQLDQKG--------------------SHDYSVINLRYGWVMD 190 (246)
T ss_dssp TSEEEEEGG--------GTEEEEEECHHHHHHHHHHHHHHHTCS--------------------CCCEEEEECSSSCHHH
T ss_pred CceEEEcCC--------CCEEEEEcCHHHHHHHHHHHHHhcccc--------------------ccceEEEEecCCCHHH
Confidence 356666543 347889999999998888776642211 0122334444444333
Q ss_pred eecCCchHHHHHHHHh------CCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHH
Q 003933 310 IIGRGGETIKGLQTRS------GARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEV 367 (785)
Q Consensus 310 VIGKgGetIK~Iq~~T------GArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~l 367 (785)
|. +.|+.|.... +.+|. . +.....|.|+|+++.++..+++|..|
T Consensus 191 l~----~~L~~~~~~~~~~~~~~~~v~--a--------d~rtNsliv~~~~~~~~~i~~lI~~L 240 (246)
T 4e9j_A 191 AA----EVLNNAMSRGQAKGAAGAQVI--A--------DARTNRLIILGPPQARAKLVQLAQSL 240 (246)
T ss_dssp HH----HHHHHHHHHTCSTTCTTCEEE--E--------EGGGTEEEEESSHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHhccCCCCCCCceEEE--E--------eCCCCeEEEECCHHHHHHHHHHHHHh
Confidence 32 2333333321 23444 2 12345688999999999999999765
No 101
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=58.38 E-value=7.5 Score=45.37 Aligned_cols=93 Identities=22% Similarity=0.383 Sum_probs=64.1
Q ss_pred eecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhccCCCCcccccccchhhccC
Q 003933 214 LIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQASG 293 (785)
Q Consensus 214 IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~~gg~p~~~~~g~~~~~~~~ 293 (785)
++=.++..||+|-++...+|.|+.+.+ +.- .-++|+++|.+++-++. +...+. |
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~~~~~~~~~~~~--~~~~~~---~------- 99 (640)
T 2xr1_A 46 KFADDGNIIRNLAKELRTRIAMRPDPR-----------VLA---TPEDSISIIEEVVPKES--VISSYY---F------- 99 (640)
T ss_dssp HHHHCTHHHHHHHHHHTSCEEEEECGG-----------GCC---CHHHHHHHHHHHSCGGG--CEEEEE---E-------
T ss_pred HhccccHHHHHHHHHhhceEEEeCChh-----------hcC---CHHHHHHHHHHhCCCcc--Ccccee---e-------
Confidence 344678999999999999999986521 111 13578888888886641 110000 0
Q ss_pred CccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEe
Q 003933 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVL 332 (785)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~ 332 (785)
...+-++.|-..+-|+||||.|+++++|..++|-+..++
T Consensus 100 ~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 138 (640)
T 2xr1_A 100 DPDSGEVIIEAEKPGLVIGKHGATLREITKQIGWIPKVV 138 (640)
T ss_dssp CTTTSEEEEEESSHHHHHCSSSHHHHHHHHHHCSEEEEE
T ss_pred cCCCceEEEEeCCCCcccccchhhHHHHHhccCcccccc
Confidence 112334556666678999999999999999999988864
No 102
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=56.73 E-value=4 Score=41.92 Aligned_cols=37 Identities=24% Similarity=0.604 Sum_probs=28.6
Q ss_pred ccEEEEEecCCccceeecCCchHHHHHH----HHhCCeEEE
Q 003933 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQ----TRSGARIQV 331 (785)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGKgGetIK~Iq----~~TGArIqI 331 (785)
...++|.|-..+-|.|||++|+.|++|+ +.++..|+|
T Consensus 61 ~~~i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~~~v~I 101 (233)
T 3i1m_C 61 AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 101 (233)
T ss_dssp SSCBCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHTSCBCC
T ss_pred CCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 3456778888889999999999998875 456666553
No 103
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=56.00 E-value=3.8 Score=41.31 Aligned_cols=37 Identities=24% Similarity=0.604 Sum_probs=29.1
Q ss_pred ccEEEEEecCCccceeecCCchHHHHHH----HHhCCeEEE
Q 003933 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQ----TRSGARIQV 331 (785)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGKgGetIK~Iq----~~TGArIqI 331 (785)
...++|.|-..+-|.|||++|+.|++|+ +.++.+|+|
T Consensus 60 ~~~i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 60 AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp SSSBCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred CCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 3456778888889999999999998865 567777664
No 104
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=55.91 E-value=15 Score=37.45 Aligned_cols=57 Identities=23% Similarity=0.357 Sum_probs=41.8
Q ss_pred EEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHH
Q 003933 202 RKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLIN 267 (785)
Q Consensus 202 ~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~ 267 (785)
+-|.|+..++.++||+++..|+.|.+.+++.|.|-.+ -.|-|.++.+.+..+.+.|.
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~N---------G~IWi~~~~~~~~~~~~ai~ 194 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQN---------GLIWVNGDRRKVSIAEEAIY 194 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTT---------SEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEECC---------cEEEEeCCchhHHHHHHHHH
Confidence 3457888899999999999999999999999998643 24557776554444444333
No 105
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=55.79 E-value=9.3 Score=44.50 Aligned_cols=93 Identities=23% Similarity=0.388 Sum_probs=63.1
Q ss_pred eecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhhccCCCCcccccccchhhccC
Q 003933 214 LIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQASG 293 (785)
Q Consensus 214 IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~~~gg~p~~~~~g~~~~~~~~ 293 (785)
++=.++..||+|-++...+|.|+.+.+ +.- .-++|+++|.+++-++. +...+. |
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~---~~~~~~~~~~~~~~~~~--~~~~~~---~------- 95 (636)
T 2ycb_A 42 IITENGNLIRDIAKDIRKRIIIRSDRS-----------VLM---DPEKAIRKIHEIVPEEA--KITNIS---F------- 95 (636)
T ss_dssp HHHSCTHHHHHHHHHHTSCEEEEECGG-----------GCC---CHHHHHHHHHHTSCSTT--CEEEEE---E-------
T ss_pred HhhcccHHHHHHHHHhhceEEEeCChh-----------hcC---CHHHHHHHHHHhCCCcc--CccceE---e-------
Confidence 445778999999999999999986521 111 13567888888876541 110000 0
Q ss_pred CccEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEe
Q 003933 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVL 332 (785)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~ 332 (785)
...+-++.|=..+-|+||||.|+++++|.+++|-+-.|+
T Consensus 96 ~~~~~~v~~~~~~p~~~~g~~~~~~~~i~~~~~~~~~~~ 134 (636)
T 2ycb_A 96 DDVTCEVIIEARKPGLVIGKYGSTSREIVKNTGWAPKIL 134 (636)
T ss_dssp ETTTTEEEEEESCTHHHHCTTSHHHHHHHHHHCCEEEEE
T ss_pred cCCCceEEEEECCCCccccccchhHHHHhhccCCcccee
Confidence 011224555556669999999999999999999988764
No 106
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=55.23 E-value=61 Score=32.84 Aligned_cols=27 Identities=30% Similarity=0.160 Sum_probs=22.6
Q ss_pred cEEEEEcC--HHHHHHHHHHHHHHHhccc
Q 003933 346 RIVRVTGD--MRQIEIAQEMIKEVLSQTV 372 (785)
Q Consensus 346 r~VtIsG~--~eqVe~Ak~lI~~ll~~~~ 372 (785)
-.|+|+|. .+.+..|.+.|..+|.+.+
T Consensus 188 GKiviTGaks~~d~~~A~~~I~p~L~~fr 216 (218)
T 3eik_A 188 GKIVLTGAKVRDDIYQAFNNIYPVLIQHR 216 (218)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHHTB
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 35888886 7899999999999998754
No 107
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=51.14 E-value=23 Score=36.03 Aligned_cols=58 Identities=31% Similarity=0.445 Sum_probs=43.6
Q ss_pred EEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHH
Q 003933 298 VEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKE 366 (785)
Q Consensus 298 ~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ 366 (785)
+-+.|..+++.++||+++..|+.|.+.++|.|.| .. +-.|-|.+....+..+...|+.
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~v--G~---------NG~IWi~~~~~~~~~~~~ai~~ 195 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVV--GQ---------NGLIWVNGDRRKVSIAEEAIYL 195 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEE--CT---------TSEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEE--EC---------CcEEEEeCCchhHHHHHHHHHH
Confidence 3468889999999999999999999999999984 12 3456688886655544444433
No 108
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=50.99 E-value=5 Score=35.31 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=22.4
Q ss_pred EEEEEecCCccceeecCCchHHHHHHH
Q 003933 201 SRKIEVPNNKVGVLIGKAGDTIRYLQY 227 (785)
Q Consensus 201 t~~IlVP~~~VG~IIGk~G~tIK~Iqe 227 (785)
..+|.|-..+-|.|||++|..|++|+.
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~ 62 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTA 62 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHH
Confidence 467777778899999999999988765
No 109
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=50.50 E-value=6.4 Score=40.56 Aligned_cols=35 Identities=37% Similarity=0.690 Sum_probs=26.6
Q ss_pred cEEEEEecCCccceeecCCchHHHHHHH----HhCCeEE
Q 003933 296 EQVEIKVPNEKVGLIIGRGGETIKGLQT----RSGARIQ 330 (785)
Q Consensus 296 ~~~~i~VP~~~vG~VIGKgGetIK~Iq~----~TGArIq 330 (785)
..++|.|-..+-|.|||++|+.|++|+. .++.+|+
T Consensus 62 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L~k~~~~~v~ 100 (239)
T 2vqe_C 62 DNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTGKNVA 100 (239)
T ss_dssp SCBCCEEEESCGGGTSCSSSSHHHHHHHHHHHHSTTCCC
T ss_pred CeEEEEEEeCCCcceecCCchHHHHHHHHHHHHhCCeeE
Confidence 4566778888899999999999988764 4554444
No 110
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=50.15 E-value=27 Score=35.53 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=43.7
Q ss_pred EEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecc-cHHHHHHHHHHHHHH
Q 003933 202 RKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIG-TLSNIDKAEKLINAV 269 (785)
Q Consensus 202 ~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~G-t~e~V~kA~~lI~el 269 (785)
+-|.|....+.+++|+++.+|+.|.++++++|.|-.+ ..|-|.+ +.+.+..+.+.|..+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~N---------G~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVARN---------GRIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEETT---------TEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeCC---------CEEEEecCCHHHHHHHHHHHHHH
Confidence 4567888899999999999999999999999998642 3555665 555555555544443
No 111
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=44.88 E-value=2e+02 Score=27.78 Aligned_cols=40 Identities=28% Similarity=0.393 Sum_probs=29.5
Q ss_pred HHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcC-HHHHHHHHHHHHH
Q 003933 317 TIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGD-MRQIEIAQEMIKE 366 (785)
Q Consensus 317 tIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~-~eqVe~Ak~lI~~ 366 (785)
.|-++.+.++-+|+..|. ...|.|+|. .+.++.++.||..
T Consensus 109 kIvK~IKdsklKVqa~IQ----------Gd~vRVtgKkrDDLQ~viallk~ 149 (163)
T 1in0_A 109 KITKLVKDSKIKVQTQIQ----------GEQVRVTGKSRDDLQAVIQLVKS 149 (163)
T ss_dssp HHHHHHHHHTCSEEEEEE----------TTEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcceeEec----------CcEEEEecCCHHHHHHHHHHHHh
Confidence 455556788888885442 347999997 7889999888875
No 112
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=44.49 E-value=1.4e+02 Score=29.11 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=21.6
Q ss_pred ceEecc--cHHHHHHHHHHHHHHHHhh
Q 003933 249 PVEIIG--TLSNIDKAEKLINAVIAEA 273 (785)
Q Consensus 249 iV~I~G--t~e~V~kA~~lI~elI~e~ 273 (785)
.|.|+| +.+.+.+|++.|.++|++.
T Consensus 60 Kiv~TGaks~e~~~~a~~~i~~~L~~l 86 (180)
T 1ytb_A 60 KMVVTGAKSEDDSKLASRKYARIIQKI 86 (180)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHHc
Confidence 567777 7889999999999999886
No 113
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=43.40 E-value=1.1e+02 Score=32.14 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhhccCCCCcccccccchhhccCCccEEEEEecCCcc-ceeecCCchHHHHHHHHhCCeEEEecCCCC
Q 003933 259 IDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKV-GLIIGRGGETIKGLQTRSGARIQVLIPQHL 337 (785)
Q Consensus 259 V~kA~~lI~elI~e~~~gg~p~~~~~g~~~~~~~~~~~~~~i~VP~~~v-G~VIGKgGetIK~Iq~~TGArIqI~i~~~l 337 (785)
.++...+|...|+|+...+ . +.+ ... .....++.|-...- |.|-| -+.+.+|-+..+|+|..+..+.
T Consensus 13 ~~~~~~~i~~~l~ED~~~g--D-----~Tt-~~~-~~~~~~a~~~ar~~pgv~aG--~~~~~~~f~~~~~~v~~~~~dG- 80 (285)
T 1o4u_A 13 MEKILDLLMSFVKEDEGKL--D-----LAS-FPL-RNTTAGAHLLLKTENVVASG--IEVSRMFLEKMGLLSKFNVEDG- 80 (285)
T ss_dssp CHHHHHHHHHHHHHHHCSC--C-----TTT-GGG-TTCEEEEEEEECCSEEECCS--HHHHHHHHHHTTCEEEESCCTT-
T ss_pred hhhhHHHHHHHHHhcCCCC--C-----ccc-hhc-cCCeEEEEEEEcCCCeEEEc--HHHHHHHHHHcCCEEEEEcCCC-
Confidence 4566677888888763211 1 111 000 11223333333333 43433 4678888888899887554443
Q ss_pred CCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 338 PEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 338 P~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
..-...+.+++|+|+...+..+.+.+..+|..
T Consensus 81 -~~v~~g~~v~~i~G~~~~ll~~Er~aLn~l~~ 112 (285)
T 1o4u_A 81 -EYLEGTGVIGEIEGNTYKLLVAERTLLNVLSV 112 (285)
T ss_dssp -CEEESCEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred -CCcCCCCEEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 22234578999999999999999999888754
No 114
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=41.95 E-value=8.9 Score=40.23 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=26.5
Q ss_pred cEEEEEecC-CccceeecCCchHHHHHHH--------HhCCeEE
Q 003933 296 EQVEIKVPN-EKVGLIIGRGGETIKGLQT--------RSGARIQ 330 (785)
Q Consensus 296 ~~~~i~VP~-~~vG~VIGKgGetIK~Iq~--------~TGArIq 330 (785)
....|.|.. ++.+.||||+|++||+|.. ..+|+|.
T Consensus 240 i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~ 283 (308)
T 3iev_A 240 IKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVY 283 (308)
T ss_dssp EEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEE
T ss_pred EEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceE
Confidence 345667777 5789999999999998754 4566666
No 115
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=39.69 E-value=1.2e+02 Score=31.06 Aligned_cols=27 Identities=33% Similarity=0.244 Sum_probs=22.2
Q ss_pred cEEEEEcC--HHHHHHHHHHHHHHHhccc
Q 003933 346 RIVRVTGD--MRQIEIAQEMIKEVLSQTV 372 (785)
Q Consensus 346 r~VtIsG~--~eqVe~Ak~lI~~ll~~~~ 372 (785)
-.|+|+|. .+.++.|.+.|..+|.+.+
T Consensus 210 GKIviTGaK~~~~~~~Ai~~i~p~L~~~~ 238 (240)
T 1rm1_A 210 GKIVLTGAKQREEIYQAFEAIYPVLSEFR 238 (240)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHHTB
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHHHhc
Confidence 35888886 7899999999999987643
No 116
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=39.45 E-value=15 Score=38.43 Aligned_cols=39 Identities=18% Similarity=0.335 Sum_probs=29.5
Q ss_pred CCeEEEEEecCC-ccceeecCCchHHHHH--------HHHhCCeEEEc
Q 003933 198 STMSRKIEVPNN-KVGVLIGKAGDTIRYL--------QYNSGAKIQIT 236 (785)
Q Consensus 198 ~~~t~~IlVP~~-~VG~IIGk~G~tIK~I--------qeeTGAkI~I~ 236 (785)
..+.-.|+|... ..+.||||+|++||+| ++-++++|.+.
T Consensus 238 ~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 238 LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 346667777765 6788999999999887 44678888774
No 117
>3oss_D Type 2 secretion system, secretin GSPD; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=38.76 E-value=1.3e+02 Score=29.24 Aligned_cols=127 Identities=14% Similarity=0.068 Sum_probs=69.7
Q ss_pred hHHHHHHHHhCCeEEEccCCCCCCCCCCcceEec----ccHHHHHHHHHHHHHHHHhh--cc-------------CCCCc
Q 003933 220 DTIRYLQYNSGAKIQITRDADADPHAATRPVEII----GTLSNIDKAEKLINAVIAEA--DA-------------GGSPS 280 (785)
Q Consensus 220 ~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~----Gt~e~V~kA~~lI~elI~e~--~~-------------gg~p~ 280 (785)
++|+.|-+.||..|.|..+- .-.|+|. =+...+..++..|++.--=. .. ++.-.
T Consensus 20 ~vl~~la~~~g~n~vv~~~V-------~G~vTl~s~~pl~~~~~~~~l~~vL~~~Gl~~~~~~~~~~~~~y~~~~g~v~~ 92 (181)
T 3oss_D 20 SFIETVGANLNKTIIMGPGV-------QGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMYIDTNNDGYIEGDELVLK 92 (181)
T ss_dssp HHHHHHHHHHTCCEEECSCC-------CCEEEEEESSCEEHHHHHHHHHHHHHHHTEEEEEEECCTTSSSCCCGGGEEEE
T ss_pred HHHHHHHHHHCCcEEECCCC-------ceEEEEEecCCCCHHHHHHHHHHHHHHCCCEEEEeecccccccccccCCCEEE
Confidence 56788999999999998542 1246665 35677777777776653110 00 00000
Q ss_pred cccc------ccc----hh--hccCCccEEEEEecCCccceeecCCchHHHHHHHHh-CCeEEEecCCCCCCCCCCCccE
Q 003933 281 LVAR------GLA----TA--QASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRS-GARIQVLIPQHLPEGDGSKERI 347 (785)
Q Consensus 281 ~~~~------g~~----~~--~~~~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~T-GArIqI~i~~~lP~~~~s~er~ 347 (785)
.+.. ... .. .......+..|.+-...+..|. ..|+.|.... +.+|.+. .....
T Consensus 93 V~p~~~a~~~~~~~~~~~~~~~~~~~l~t~v~~L~y~~A~el~----~~L~~lls~~~~g~v~~d----------~~tN~ 158 (181)
T 3oss_D 93 VVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELA----PILRQMIDSAGSGNVVNY----------DPSNV 158 (181)
T ss_dssp EEEC------------------CTTCEEEEEEECSSSCGGGGH----HHHHHHHHHHCTTCEEEE----------ETTTE
T ss_pred EEechhhhhcccccccccccccccCCcEEEEEEeecCCHHHHH----HHHHHhcCcccCceEEEe----------CCCCE
Confidence 0000 000 00 0001122333445444444443 3456665544 3566632 12578
Q ss_pred EEEEcCHHHHHHHHHHHHHH
Q 003933 348 VRVTGDMRQIEIAQEMIKEV 367 (785)
Q Consensus 348 VtIsG~~eqVe~Ak~lI~~l 367 (785)
|.|+|+.+.|++.+++|..+
T Consensus 159 Liv~d~~~~i~~i~~lI~~l 178 (181)
T 3oss_D 159 IMLTGRASVVERLTEVIQRV 178 (181)
T ss_dssp EEEEEEHHHHHHHHHHHHHH
T ss_pred EEEEeCHHHHHHHHHHHHHH
Confidence 99999999999999999865
No 118
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=37.93 E-value=1e+02 Score=30.61 Aligned_cols=51 Identities=16% Similarity=0.232 Sum_probs=37.9
Q ss_pred chHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHH-HhcccCC
Q 003933 315 GETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEV-LSQTVRP 374 (785)
Q Consensus 315 GetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~l-l~~~~r~ 374 (785)
-..|.+|.+..+|+|.-+ ..+.-+|+++|+.+.|+.-+++++.. |.+..|.
T Consensus 126 r~ei~~i~~~fra~ivDv---------~~~s~~iE~tG~~~ki~a~i~~l~~~gi~E~~Rt 177 (193)
T 2fgc_A 126 KQEIFQLVEIFRGKIIDV---------SREGAIIEITGARSKVEAFINLLPQKQVEEIART 177 (193)
T ss_dssp HHHHHHHHHHTTCEEEEE---------CSSEEEEEEEECHHHHHHHHHHSCGGGEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEE---------cCCEEEEEEcCCHHHHHHHHHHhhhhCCEEEEcc
Confidence 367999999999998722 23467899999999999888888652 4444443
No 119
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=36.69 E-value=1.8e+02 Score=30.38 Aligned_cols=104 Identities=12% Similarity=0.107 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCcccccccchhhccCCccEEEEEecCCccceeecCCchHHHHHHHH-h---CCeEEEe
Q 003933 257 SNIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTR-S---GARIQVL 332 (785)
Q Consensus 257 e~V~kA~~lI~elI~e~~~gg~p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~-T---GArIqI~ 332 (785)
+.+.....+|...|+|+...+... +.+ .........++.|-...-|.|=| -+.+.+|-+. . +|+|..+
T Consensus 5 ~~~~~~~~~i~~~l~ED~~~g~~D-----~Tt-~~~~~~~~~~a~~~ar~~gv~aG--~~~~~~~f~~~~~~~~~~v~~~ 76 (284)
T 1qpo_A 5 WELAAARAAIARGLDEDLRYGPDV-----TTL-ATVPASATTTASLVTREAGVVAG--LDVALLTLNEVLGTNGYRVLDR 76 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCH-----HHH-HHSCTTCEEEEEEEESSCEECCC--HHHHHHHHHHHHCTTSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCC-----ccc-cccCCCCeEEEEEEECCCEEEEC--HHHHHHHHHHhCCCCCEEEEEE
Confidence 345555667777787763211000 111 10111223344333333344433 4567777776 6 6777644
Q ss_pred cCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 333 IPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 333 i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
..+. ..-...+.+++|+|+...+..+.+.+..+|..
T Consensus 77 ~~dG--~~v~~g~~v~~i~G~~~~ll~~Er~~Ln~l~~ 112 (284)
T 1qpo_A 77 VEDG--ARVPPGEALMTLEAQTRGLLTAERTMLNLVGH 112 (284)
T ss_dssp CCTT--CEECTTCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred cCCC--CEecCCcEEEEEEEeHHHHHHHHHHHHHHHHH
Confidence 4443 22234678999999999999999998887754
No 120
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=36.21 E-value=1.7e+02 Score=30.15 Aligned_cols=69 Identities=16% Similarity=0.225 Sum_probs=47.2
Q ss_pred EEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 298 VEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 298 ~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
.++.|-...-+.|=| =+.+.++-+..+++|....++. ..-...+.+++|+|+...+..+...+..+|..
T Consensus 31 ~~~~~~~r~~~v~aG--~~~~~~~~~~~~~~v~~~~~eG--~~v~~g~~~~~v~G~~~~~l~~Er~~Ln~l~~ 99 (273)
T 2b7n_A 31 ATAFVRAKQEGVFSG--EKYALELLEMTGIECVQTIKDK--ERFKPKDALMEIRGDFSMLLKVERTLLNLLQH 99 (273)
T ss_dssp EEEEEEESSCEECCC--HHHHHHHHHHTTCEEEEECCTT--CEECTTCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCEEEEc--HHHHHHHHHHCCcEEEEEcCCC--CCcCCCCEEEEEEecHHHHHHHHHHHHHHHHH
Confidence 344333333344433 4678888888899996445544 22345678999999999999999999888754
No 121
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=35.70 E-value=85 Score=31.80 Aligned_cols=59 Identities=22% Similarity=0.254 Sum_probs=44.5
Q ss_pred EEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcC-HHHHHHHHHHHHHH
Q 003933 298 VEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGD-MRQIEIAQEMIKEV 367 (785)
Q Consensus 298 ~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~-~eqVe~Ak~lI~~l 367 (785)
+-+.|...++.+++|+++..|+.|.+.++|+|.| - . +..|-|.+. .+.+..+...|..+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~v-G-~---------NG~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFV-A-R---------NGRIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEE-E-T---------TTEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEE-e-C---------CCEEEEecCCHHHHHHHHHHHHHH
Confidence 4568889999999999999999999999999984 2 1 456778875 55555555555443
No 122
>3gr5_A ESCC; secretin, type III secretion system, outer membrane, transport, membrane protein; 2.05A {Escherichia coli}
Probab=35.40 E-value=2.3e+02 Score=26.72 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=21.3
Q ss_pred CccEEEEEcCHHHHHHHHHHHHHHH
Q 003933 344 KERIVRVTGDMRQIEIAQEMIKEVL 368 (785)
Q Consensus 344 ~er~VtIsG~~eqVe~Ak~lI~~ll 368 (785)
..++|.|+|++..|+..+++|..+-
T Consensus 126 ~tn~l~Vsg~p~~v~~v~~~i~~LD 150 (156)
T 3gr5_A 126 TFNSIEVRGVPECIKYITSLSESLD 150 (156)
T ss_dssp STTCEEEEECHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHHh
Confidence 4678999999999999999987653
No 123
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=35.14 E-value=18 Score=37.76 Aligned_cols=29 Identities=24% Similarity=0.333 Sum_probs=21.4
Q ss_pred EEEEEecC-CccceeecCCchHHHHHHHHh
Q 003933 297 QVEIKVPN-EKVGLIIGRGGETIKGLQTRS 325 (785)
Q Consensus 297 ~~~i~VP~-~~vG~VIGKgGetIK~Iq~~T 325 (785)
...|.|-. ++.+.|||++|++||+|-.++
T Consensus 232 ~~~i~v~~~~~k~i~ig~~G~~~k~ig~~a 261 (301)
T 1ega_A 232 NGLILVEREGQKKMVIGNKGAKIKTIGIEA 261 (301)
T ss_dssp EEEEEESSHHHHHHHHCGGGHHHHHHHHHH
T ss_pred EEEEEEEECCceEEEECCCcHHHHHHHHHH
Confidence 34556644 677999999999999875443
No 124
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=34.96 E-value=11 Score=38.27 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=23.8
Q ss_pred ccEEEEEecCCccceeecCCchHHHHHHHH
Q 003933 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324 (785)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGKgGetIK~Iq~~ 324 (785)
...++|.|-..+-|.||||+|+.|++|+..
T Consensus 69 ~~~i~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 69 IDLIQVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp SSCBCCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred CCeEEEEEEecCCCcEecCCcHHHHHHHHH
Confidence 345667788888899999999999887643
No 125
>3io0_A ETUB protein; tamdem repeat of bacterial microcompartment domain in A single polypeptide chain, structural protein; 3.00A {Clostridium kluyveri dsm 555}
Probab=34.59 E-value=1.6e+02 Score=30.04 Aligned_cols=130 Identities=9% Similarity=0.130 Sum_probs=71.1
Q ss_pred HHHHHHhCCeEEEcc-CCCCCCCCCC-cceEecc-cHHHHHHHHHHHHHHHHhhccCCCCcccccccchhhccCCccEEE
Q 003933 223 RYLQYNSGAKIQITR-DADADPHAAT-RPVEIIG-TLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVE 299 (785)
Q Consensus 223 K~IqeeTGAkI~I~k-~~d~~p~s~e-RiV~I~G-t~e~V~kA~~lI~elI~e~~~gg~p~~~~~g~~~~~~~~~~~~~~ 299 (785)
...-+.+.+.|...+ .....++... ..+.|.| +...|+.|++...+.+++.... ..+. ....+.
T Consensus 57 D~AvKaA~Velv~i~lar~~~~G~G~g~~ii~gg~dVs~V~sAve~~~~~~~~~~~~---~~~~----------~~gh~~ 123 (230)
T 3io0_A 57 DEAVKGTNTEVATIELPRDTKGGAGHGIFIVLKAADVSDARRAVEIALKQTDKYLGN---VYLC----------DAGHLE 123 (230)
T ss_dssp HHHHHTSSCEEEEEECCSCSSSSSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHHTT---EEEE----------TTEEEE
T ss_pred HHHHhhcCeEEEEEeccccccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHH---heec----------CCCcEE
Confidence 444566777776621 1122332222 3444444 8999999999999988765210 0000 001111
Q ss_pred E--------------EecC-CccceeecCCch-HHHH---HHHHhCCeEEEecCCCCCCC--CCCCccEEEEEcCHHHHH
Q 003933 300 I--------------KVPN-EKVGLIIGRGGE-TIKG---LQTRSGARIQVLIPQHLPEG--DGSKERIVRVTGDMRQIE 358 (785)
Q Consensus 300 i--------------~VP~-~~vG~VIGKgGe-tIK~---Iq~~TGArIqI~i~~~lP~~--~~s~er~VtIsG~~eqVe 358 (785)
+ -++. +-+|.|++.--+ .|.- ..+...++|.-+... ..+ ...++-.|.|+|+...|+
T Consensus 124 ~~v~ar~~~al~~~~g~~~g~AiGil~~~p~~~~i~aaD~AlKaA~V~l~~~~~~--~~g~~~~snk~~~~itGdvsAV~ 201 (230)
T 3io0_A 124 VQYTARASLIFEKAFGAPSGQAFGIMHAAPAGVGMIVADTALKTADVKLITYGSP--TNGVLSYTNEILITISGDSGAVL 201 (230)
T ss_dssp EEEESSCCHHHHHHHCCCTTSEEEEEEEESHHHHHHHHHHHHHHSCCEEEEEECS--SSSSSSSCSCEEEEEEECHHHHH
T ss_pred EEEecChHHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEcC--CCCcccccceEEEEEEEcHHHHH
Confidence 1 1122 456777776653 2322 335556666422211 111 245678899999999999
Q ss_pred HHHHHHHHH
Q 003933 359 IAQEMIKEV 367 (785)
Q Consensus 359 ~Ak~lI~~l 367 (785)
.|.+..+++
T Consensus 202 ~Av~a~~~~ 210 (230)
T 3io0_A 202 QSLTAARKA 210 (230)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998887654
No 126
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=34.29 E-value=8.4 Score=42.12 Aligned_cols=9 Identities=22% Similarity=0.442 Sum_probs=4.4
Q ss_pred HHHHHHHHH
Q 003933 258 NIDKAEKLI 266 (785)
Q Consensus 258 ~V~kA~~lI 266 (785)
+.+.|+++|
T Consensus 272 ~~e~A~~fl 280 (449)
T 3iot_A 272 NKELAKEFL 280 (449)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 444555554
No 127
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=32.16 E-value=2.7e+02 Score=29.74 Aligned_cols=70 Identities=9% Similarity=0.109 Sum_probs=46.5
Q ss_pred EEEEEecCCccceeecCCchHHHHHHHHh--CCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 297 QVEIKVPNEKVGLIIGRGGETIKGLQTRS--GARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 297 ~~~i~VP~~~vG~VIGKgGetIK~Iq~~T--GArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
..++.|=...-|.|-| =+.+++|-+.. +|+|+...++. ......+.+++|+|+...+..+...+..+|..
T Consensus 78 ~~~a~i~are~gVlaG--~~~a~~vf~~ld~~~~v~~~~~dG--~~v~~g~~l~~v~G~a~~ll~~Er~aLN~L~~ 149 (320)
T 3paj_A 78 ISTATIITREAGVFCG--QLWADEVFKQLGGQVSIEWHVQDG--DTLTPNQTLCTLTGPARILLTGERNAMNFIQT 149 (320)
T ss_dssp EEEEEEEESSCEECCC--HHHHHHHHHHTTSCCEEEESSCTT--CEECTTCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCceEec--HHHHHHHHHHcCCCeEEEEEeCCC--CEecCCCEEEEEEecHHHHHHHHHHHHHHHHH
Confidence 3344443333455543 35677777777 68887555443 22345688999999999999999998877753
No 128
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=32.04 E-value=1.5e+02 Score=28.38 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=34.2
Q ss_pred hHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHH
Q 003933 316 ETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKE 366 (785)
Q Consensus 316 etIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ 366 (785)
..|.+|.+..+|+|.-+ +.+.-+|+++|+.+.|+.-.++++.
T Consensus 100 ~~i~~~~~~fra~ivdv---------~~~~~~ie~tg~~~ki~~~~~~l~~ 141 (164)
T 2f1f_A 100 DEVKRNTEIFRGQIIDV---------TPSLYTVQLAGTSGKLDAFLASIRD 141 (164)
T ss_dssp HHHHHHHHHTTCEEEEE---------CSSEEEEEEEECHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEE---------CCCEEEEEEeCCHHHHHHHHHHHHh
Confidence 56899999999998722 2346789999999999998888865
No 129
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=32.04 E-value=1.8e+02 Score=30.58 Aligned_cols=69 Identities=12% Similarity=0.223 Sum_probs=47.1
Q ss_pred EEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 298 VEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 298 ~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
.++.|-...-+.|-| =+.+.+|-+..+|+|....++. ..-...+.+++|+|+...+..+...+..+|+.
T Consensus 44 ~~~~~~~r~~~v~aG--~~~~~~~~~~~~~~v~~~~~dG--~~v~~g~~l~~v~G~~~~~l~~Er~~Ln~l~~ 112 (299)
T 2jbm_A 44 SQAALWAKSPGVLAG--QPFFDAIFTQLNCQVSWFLPEG--SKLVPVARVAEVRGPAHCLLLGERVALNTLAR 112 (299)
T ss_dssp EEEEEEECSCEECCC--HHHHHHHHHHTTCEEEESSCTT--CEECSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCEEEEc--HHHHHHHHHHcCCEEEEEcCCC--CCCCCCCEEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 334333333344433 4678888888899996455443 22345688999999999999999999888753
No 130
>2y9k_A Protein INVG; protein transport, type III secretion system, outer membrane secretin family, C15 fold; 8.30A {Salmonella enterica subsp}
Probab=31.49 E-value=1.1e+02 Score=28.20 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=21.8
Q ss_pred CCCccEEEEEcCHHHHHHHHHHHHHH
Q 003933 342 GSKERIVRVTGDMRQIEIAQEMIKEV 367 (785)
Q Consensus 342 ~s~er~VtIsG~~eqVe~Ak~lI~~l 367 (785)
+...++|.|+|++..|+..+++|..+
T Consensus 108 d~~tn~l~v~g~~~~v~~v~~~i~~l 133 (137)
T 2y9k_A 108 DNRKGTFYVSGPPVYVDMVVNAATMM 133 (137)
T ss_dssp CSSTTEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECcHHHHHHHHHHHHHh
Confidence 33578999999999999999988764
No 131
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=29.30 E-value=68 Score=26.37 Aligned_cols=46 Identities=17% Similarity=0.149 Sum_probs=29.8
Q ss_pred HHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHHhh
Q 003933 221 TIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (785)
Q Consensus 221 tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~e~ 273 (785)
+|++.++-.|+..... + ..+..|+|+|-+++|.+-+.+-.+.|..+
T Consensus 22 mirqarkfagtvtytl-d------gndleiritgvpeqvrkelakeaerlake 67 (85)
T 2kl8_A 22 MIRQARKFAGTVTYTL-D------GNDLEIRITGVPEQVRKELAKEAERLAKE 67 (85)
T ss_dssp HHHHHTTTTCEEEEEE-C------SSCEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceEEEEe-c------CCeeEEEEecChHHHHHHHHHHHHHHHHh
Confidence 4455555555533333 2 23678999999999999877766666554
No 132
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=29.30 E-value=16 Score=38.40 Aligned_cols=32 Identities=25% Similarity=0.491 Sum_probs=24.2
Q ss_pred EEEecC-CccceeecCCchHHHHHH--------HHhCCeEE
Q 003933 299 EIKVPN-EKVGLIIGRGGETIKGLQ--------TRSGARIQ 330 (785)
Q Consensus 299 ~i~VP~-~~vG~VIGKgGetIK~Iq--------~~TGArIq 330 (785)
.|.|-. ++.+.||||+|++||+|. +..+++|.
T Consensus 233 ~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~ 273 (301)
T 1wf3_A 233 ILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVY 273 (301)
T ss_dssp EEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred EEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceE
Confidence 455655 677999999999999865 45567666
No 133
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=28.98 E-value=35 Score=35.19 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=23.9
Q ss_pred eEEEEEecCCccceeecCCchHHHHHHHH
Q 003933 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYN 228 (785)
Q Consensus 200 ~t~~IlVP~~~VG~IIGk~G~tIK~Iqee 228 (785)
...+|.|-..+-|.|||++|..|++|+++
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 45677777788999999999999887664
No 134
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=28.89 E-value=19 Score=36.99 Aligned_cols=26 Identities=38% Similarity=0.639 Sum_probs=20.2
Q ss_pred EEEecCCccceeecCCchHHHHHHHH
Q 003933 203 KIEVPNNKVGVLIGKAGDTIRYLQYN 228 (785)
Q Consensus 203 ~IlVP~~~VG~IIGk~G~tIK~Iqee 228 (785)
+|.|-...-|.|||++|+.|++|+++
T Consensus 65 ~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 65 AVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp CCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEeCCCcceecCCchHHHHHHHH
Confidence 44455577899999999999888654
No 135
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=28.79 E-value=2.9e+02 Score=29.03 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=46.1
Q ss_pred EEEEEecCCccceeecCCchHHHHHHHHhC--CeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 297 QVEIKVPNEKVGLIIGRGGETIKGLQTRSG--ARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 297 ~~~i~VP~~~vG~VIGKgGetIK~Iq~~TG--ArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
..+..|=...-|.|-| =+.+++|-+..+ ++|+.+..+. ..-...+.+++|+|+...+..+.+.+..+|..
T Consensus 45 ~~~a~i~are~gVlaG--~~~a~~vf~~l~~~~~v~~~~~dG--~~v~~g~~v~~i~G~a~~ll~~ER~aLN~L~~ 116 (287)
T 3tqv_A 45 DTTAFCITREEMILCG--QDFANEVINQLDKNIQITWLYSDA--QKVPANARIFELKGNVRSILTAERTILNFIQM 116 (287)
T ss_dssp EEEEEEEESSCEECCC--HHHHHHHHHHHCTTCEEEESSCTT--CEECTTCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEECCCeEEEc--HHHHHHHHHHcCCCeEEEEEeCCC--CEeeCCCEEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 3444444444454543 366788888888 5566444433 12234678999999999999999988877753
No 136
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=28.74 E-value=2.3e+02 Score=29.61 Aligned_cols=54 Identities=13% Similarity=0.170 Sum_probs=40.3
Q ss_pred chHHHHHHHHhC--CeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 315 GETIKGLQTRSG--ARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 315 GetIK~Iq~~TG--ArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
-+.+++|-+..+ |+|..+..+. ..-...+.+++|+|+...+..+.+.+..+|..
T Consensus 58 ~~~~~~~f~~~~~~~~v~~~~~dG--~~v~~g~~v~~i~G~~~~ll~~Er~aLn~l~~ 113 (286)
T 1x1o_A 58 LWVAERVFALADPRTAFTPLVAEG--ARVAEGTEVARVRGPLRGILAGERLALNLLQR 113 (286)
T ss_dssp HHHHHHHHHHHCTTCEEEESSCTT--CEECTTCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEEcCCC--CCccCCCEEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 467788888888 7776444443 22234678999999999999999999887753
No 137
>3u27_C Microcompartments protein; structural genomics, PSI-biology, MCSG, alpha-beta-alpha FOL bacterial microcompartment, shell protein; 1.85A {Leptotrichia buccalis c-1013-b}
Probab=28.51 E-value=4.2e+02 Score=26.75 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=76.2
Q ss_pred HHHHHHhCCeEEEccCCCC-----C-CCCCCcceEecc-cHHHHHHHHHHHHHHHHhhcc------CCCCccc---cccc
Q 003933 223 RYLQYNSGAKIQITRDADA-----D-PHAATRPVEIIG-TLSNIDKAEKLINAVIAEADA------GGSPSLV---ARGL 286 (785)
Q Consensus 223 K~IqeeTGAkI~I~k~~d~-----~-p~s~eRiV~I~G-t~e~V~kA~~lI~elI~e~~~------gg~p~~~---~~g~ 286 (785)
...-+.+.+.|.+.++... + ..+-+.++.|.| +...|+.|++...+.+++... .+...+. ..+.
T Consensus 55 D~A~KaA~Vel~~~r~~~gg~g~~~~~~~G~~i~iigG~dvs~V~~av~~~~~~~~~~~~~~~~~~~gh~~~~ah~ia~~ 134 (220)
T 3u27_C 55 DEATKKAVVDVAYGKSFYGGAANANTKLAGEVIGILSGPTPAEVKSGLAAAVDFIENEAAFISANDDDSIAYFAHCISRT 134 (220)
T ss_dssp HHHHHHSSCEEEEEEECTTCGGGCCSTTTTTEEEEEEESSHHHHHHHHHHHHHHHHHTCCEEECSTTSCCEEEEEEESSC
T ss_pred HHHHhhcCeEEEEEeeccccCcccccccCccEEEEecCCCHHHHHHHHHHHHHHHHhhHhheeccCCCCeEEEEeecCCc
Confidence 4556778888887764210 1 112233446667 899999999999999887521 0000000 0000
Q ss_pred chhhccCCccEEEEEec-CCccceeecCCchHHHHH---HHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHH
Q 003933 287 ATAQASGAAEQVEIKVP-NEKVGLIIGRGGETIKGL---QTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQE 362 (785)
Q Consensus 287 ~~~~~~~~~~~~~i~VP-~~~vG~VIGKgGetIK~I---q~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~ 362 (785)
... ....+-++ .+-+|.|++.....|--. .+...++|.-+. +|...+ ..--+.|+|+...|+.|.+
T Consensus 135 ~~a------l~~~~g~~~g~AiGil~~~p~~ai~aaD~A~KaA~V~l~~~~---~p~~~~-~~~g~~itGdvsAV~aAv~ 204 (220)
T 3u27_C 135 GTY------LSKTAGIPEGESLAYLIAPPLEAMYALDVALKAADVRLVAFY---GPPSET-NFGGGLLTGSQSACKAACD 204 (220)
T ss_dssp CHH------HHHHHTSCTTCCEEEEEESHHHHHHHHHHHHHHSSCEEEEEE---CSCCTT-SCEEEEEESCHHHHHHHHH
T ss_pred HHH------HHHhcCCCCcceEEEEEcCCHHHHHHHHHHHhhCCeEEEEEE---cccCcC-cEEEEEEEEcHHHHHHHHH
Confidence 000 00001122 256678887776333332 345566654111 111111 1222999999999999999
Q ss_pred HHHHHHhcccCC
Q 003933 363 MIKEVLSQTVRP 374 (785)
Q Consensus 363 lI~~ll~~~~r~ 374 (785)
...+.+++..+.
T Consensus 205 a~~~a~~~~~~~ 216 (220)
T 3u27_C 205 AFAEAVKFVADN 216 (220)
T ss_dssp HHHHHHC-CCSC
T ss_pred HHHHHHHHHhhC
Confidence 999988765443
No 138
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=27.99 E-value=14 Score=37.72 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=23.4
Q ss_pred eEEEEEecCCccceeecCCchHHHHHHH
Q 003933 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQY 227 (785)
Q Consensus 200 ~t~~IlVP~~~VG~IIGk~G~tIK~Iqe 227 (785)
...+|.|-..+-|.|||++|..|++|++
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~ 71 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTS 71 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 4567777788899999999999988764
No 139
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=26.96 E-value=2.1e+02 Score=29.97 Aligned_cols=69 Identities=14% Similarity=0.199 Sum_probs=45.7
Q ss_pred EEEEecCCccceeecCCchHHHHHHHHhCCeEEEecCCCCCCCCCCC------ccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 298 VEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQVLIPQHLPEGDGSK------ERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 298 ~~i~VP~~~vG~VIGKgGetIK~Iq~~TGArIqI~i~~~lP~~~~s~------er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
.++.|-...-+.|-| =+.+.+|-+..+|+|....++. ..-... +.+++|+|+...+..+...+..+|+.
T Consensus 40 ~~~~~~~r~~~v~aG--~~~~~~~~~~~~~~v~~~~~eG--~~v~~g~~~~~~~~l~~v~G~~~~~l~~Er~~Ln~l~~ 114 (294)
T 3c2e_A 40 KEANLYCKQDGMLCG--VPFAQEVFNQCELQVEWLFKEG--SFLEPSKNDSGKIVVAKITGPAKNILLAERTALNILSR 114 (294)
T ss_dssp EEEEEEECSSEECCC--HHHHHHHHHHTTCEEEESSCTT--CEECGGGSSSSCEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCEEEEc--HHHHHHHHHHcCCEEEEEeCCC--CEeCCCCCCCCCcEEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 344333333344433 4678888888899996444443 111233 77999999999999999999888753
No 140
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=25.87 E-value=1.6e+02 Score=28.38 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=36.4
Q ss_pred hHHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHH-HhcccC
Q 003933 316 ETIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEV-LSQTVR 373 (785)
Q Consensus 316 etIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~l-l~~~~r 373 (785)
..|.+|.+..+|+|.-+ +.+.-+|+++|+.+.|+.-.++++.. |.+..|
T Consensus 101 ~~i~~~~~~fra~ivdv---------~~~~~~ie~tg~~~ki~~~~~~l~~~gi~e~~R 150 (165)
T 2pc6_A 101 EEMKRLADIFRGNIIDV---------TNELYTIELTGTRSKLDGFLQAVDCNLILEIAR 150 (165)
T ss_dssp HHHHHHHHHTTCEEEEE---------ETTEEEEEEEECHHHHHHHHHHSCGGGEEEEEE
T ss_pred HHHHHHHHHcCCEEEEE---------cCCEEEEEEcCCHHHHHHHHHHhhhcCCEEEEc
Confidence 56899999999998722 22467899999999999888887642 334344
No 141
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=25.54 E-value=37 Score=35.45 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=25.8
Q ss_pred EEEEEecC-CccceeecCCchHHHHH--------HHHhCCeEEEc
Q 003933 201 SRKIEVPN-NKVGVLIGKAGDTIRYL--------QYNSGAKIQIT 236 (785)
Q Consensus 201 t~~IlVP~-~~VG~IIGk~G~tIK~I--------qeeTGAkI~I~ 236 (785)
...|.|.. ++.+.||||+|++||+| ++-++++|.+.
T Consensus 231 ~~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l~ 275 (301)
T 1wf3_A 231 KAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLD 275 (301)
T ss_dssp EEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred EEEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEEE
Confidence 33455554 35688999999999876 45677888774
No 142
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=25.27 E-value=23 Score=36.23 Aligned_cols=33 Identities=24% Similarity=0.523 Sum_probs=23.9
Q ss_pred EEEEecCCccceeecCCchHHHHHHH----HhCCeEE
Q 003933 202 RKIEVPNNKVGVLIGKAGDTIRYLQY----NSGAKIQ 234 (785)
Q Consensus 202 ~~IlVP~~~VG~IIGk~G~tIK~Iqe----eTGAkI~ 234 (785)
++|.|-...-|.|||++|+.|++|+. .++.+|.
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~~~v~ 100 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQ 100 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHTSCBC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceE
Confidence 45556567889999999999987764 5555433
No 143
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=24.95 E-value=29 Score=40.50 Aligned_cols=61 Identities=18% Similarity=0.291 Sum_probs=40.3
Q ss_pred hhhhcccchhhhccCCC--CCCCCCCCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEcc
Q 003933 173 VEPSNVVPQQVVDNSKS--DDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITR 237 (785)
Q Consensus 173 VE~A~~lI~~ii~~~~~--~~p~~~~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k 237 (785)
-++|+++|.+++-.+.. +-...+. +-+|+|-..+-|.+|||.|+++++|.++++-+..+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~ 144 (651)
T 3af5_A 82 PEEAEKLIFEIVPKEAEITNIAFDPS----VGEVLIEAKKPGLVIGKNGETLRLITQKVKWAPKVVR 144 (651)
T ss_dssp HHHHHHHHHHHSCGGGCCCEEEEETT----TTEEEEEESSTTTTSCTTSHHHHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHhCCCccCccceeecCC----CceEEEEECCCCccccccchhHHHHhhccCccccccc
Confidence 45677778877742211 1111222 2245555556689999999999999999999877765
No 144
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=24.79 E-value=66 Score=37.13 Aligned_cols=115 Identities=14% Similarity=0.115 Sum_probs=70.8
Q ss_pred CCCcceEecc-cHHHHHHHHHHHHHHHHhhccCCCCc---ccc--cccchhhccCCccEEEEEecCCccceeecCC--ch
Q 003933 245 AATRPVEIIG-TLSNIDKAEKLINAVIAEADAGGSPS---LVA--RGLATAQASGAAEQVEIKVPNEKVGLIIGRG--GE 316 (785)
Q Consensus 245 s~eRiV~I~G-t~e~V~kA~~lI~elI~e~~~gg~p~---~~~--~g~~~~~~~~~~~~~~i~VP~~~vG~VIGKg--Ge 316 (785)
+++-+|++.| +.+.+..|++.+..+|.+...+.... .+. .+.. .........+|.+..+.+.+|||.. -+
T Consensus 248 T~~V~lE~Ag~D~~~~~~al~~a~~li~e~~gg~~~~e~~~v~~~~g~~--~~~p~~~~~~i~l~~~~i~~llG~~i~~~ 325 (589)
T 3l4g_B 248 TRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKS--HTFPELAYRKEMVRADLINKKVGIRETPE 325 (589)
T ss_dssp CCCEEEEEEESCHHHHHHHHHHHHHHHGGGBTTSSEEECEEEECTTSCE--EEECCCCCEEEEEEHHHHHHHHTCCCCHH
T ss_pred CCEEEEEEeeeCHHHHHHHHHHHHHHHHHHcCCCceEEEEEEEecCCce--EecccccceEEEecHHHHHHhhCCCCCHH
Confidence 3455666667 68889999999999998864321100 000 0100 0001122346788888888999875 67
Q ss_pred HHHHHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHh
Q 003933 317 TIKGLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLS 369 (785)
Q Consensus 317 tIK~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~ 369 (785)
.|++|-++.|+.|.+ ..+ .+.-.|+|=--.-.|.+...||+++++
T Consensus 326 ~i~~iL~~Lgf~~~~-~~~-------~~~~~V~vPs~R~DI~~e~DLiEEVaR 370 (589)
T 3l4g_B 326 NLAKLLTRMYLKSEV-IGD-------GNQIEIEIPPTRADIIHACDIVEDAAI 370 (589)
T ss_dssp HHHHHHHHTTCEEEE-CSS-------SSEEEEEECSSCTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEE-cCC-------CceEEEECCCCccccCCccHHHHHHHH
Confidence 899999999999983 211 111234444445677778888888765
No 145
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=24.39 E-value=14 Score=40.38 Aligned_cols=18 Identities=6% Similarity=0.080 Sum_probs=13.9
Q ss_pred cHHHHHHHHHHHHHHHHh
Q 003933 255 TLSNIDKAEKLINAVIAE 272 (785)
Q Consensus 255 t~e~V~kA~~lI~elI~e 272 (785)
+.+.+.+|++++.+++++
T Consensus 184 ~~~~~~~al~~~~~l~~~ 201 (449)
T 3iot_A 184 DNAGAKAGLTFLVDLIKN 201 (449)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 446777888888888875
No 146
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=24.13 E-value=3.2e+02 Score=28.76 Aligned_cols=54 Identities=9% Similarity=0.056 Sum_probs=38.4
Q ss_pred chHHHHHHHHhCCeE--EEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHhc
Q 003933 315 GETIKGLQTRSGARI--QVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 370 (785)
Q Consensus 315 GetIK~Iq~~TGArI--qI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~~ 370 (785)
=+.+++|-+..++.| +.+.++. ..-...+.+++|+|+...+..+.+.+..+|..
T Consensus 72 ~~~a~~vf~~l~~~~~v~~~~~dG--~~v~~g~~l~~v~G~a~~ll~~Er~aLN~L~~ 127 (298)
T 3gnn_A 72 VPWFDAVVRAVDPSIEVDWRHREG--DRMSADSTVCELRGPARALLTAERNALNFLQL 127 (298)
T ss_dssp HHHHHHHHHHHCTTCEEEESSCTT--CEECTTCEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCeEEEEEcCCC--CEecCCCEEEEEEecHHHHHHHHHHHHHHHHH
Confidence 356788888888654 4333333 11234688999999999999999998887753
No 147
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=23.65 E-value=1e+02 Score=27.22 Aligned_cols=52 Identities=12% Similarity=0.064 Sum_probs=37.1
Q ss_pred hHHHHHHHHhCCeEEEecCCCCC-CCCCCCccEEEEEcCHHHHHHHHHHHHHH
Q 003933 316 ETIKGLQTRSGARIQVLIPQHLP-EGDGSKERIVRVTGDMRQIEIAQEMIKEV 367 (785)
Q Consensus 316 etIK~Iq~~TGArIqI~i~~~lP-~~~~s~er~VtIsG~~eqVe~Ak~lI~~l 367 (785)
--|.+|.+++++.|.|+...--. .+......+|.|.|+.+++++|+..+++.
T Consensus 36 PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 36 PLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp CHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 46889999999999985332100 11123456799999999999999988764
No 148
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=23.61 E-value=55 Score=31.89 Aligned_cols=37 Identities=16% Similarity=0.085 Sum_probs=31.9
Q ss_pred EEEEecCCccceeecCCch-HHHHHHHHhCCeEEEccC
Q 003933 202 RKIEVPNNKVGVLIGKAGD-TIRYLQYNSGAKIQITRD 238 (785)
Q Consensus 202 ~~IlVP~~~VG~IIGk~G~-tIK~IqeeTGAkI~I~k~ 238 (785)
+-|.|+..++-++|+|++. +|+.|.+++++.|.|-..
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~N 130 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLN 130 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEETT
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEECC
Confidence 3577888899999998888 899999999999998643
No 149
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=23.24 E-value=24 Score=36.24 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=22.7
Q ss_pred EEEEEecCCccceeecCCchHHHHHHHH
Q 003933 201 SRKIEVPNNKVGVLIGKAGDTIRYLQYN 228 (785)
Q Consensus 201 t~~IlVP~~~VG~IIGk~G~tIK~Iqee 228 (785)
..+|.|-..+-|.|||++|..|++|+.+
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4577777788899999999999887643
No 150
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=23.22 E-value=24 Score=35.48 Aligned_cols=35 Identities=26% Similarity=0.536 Sum_probs=25.1
Q ss_pred EEEEecCCccceeecCCchHHHHHHH----HhCCeEEEc
Q 003933 202 RKIEVPNNKVGVLIGKAGDTIRYLQY----NSGAKIQIT 236 (785)
Q Consensus 202 ~~IlVP~~~VG~IIGk~G~tIK~Iqe----eTGAkI~I~ 236 (785)
++|.|-..+-|.|||++|+.|++|++ .++.+|.|.
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I~ 101 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN 101 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCCB
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEEE
Confidence 45555567789999999999987754 566554443
No 151
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=23.01 E-value=2.8e+02 Score=26.74 Aligned_cols=86 Identities=13% Similarity=0.176 Sum_probs=47.8
Q ss_pred hHHHHHHHHhCCeEEEccCCCCCCCCCCcceEecccHHHHHHHHHHHHHHHH----hhccCCCCcccccccchhhccCCc
Q 003933 220 DTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIA----EADAGGSPSLVARGLATAQASGAA 295 (785)
Q Consensus 220 ~tIK~IqeeTGAkI~I~k~~d~~p~s~eRiV~I~Gt~e~V~kA~~lI~elI~----e~~~gg~p~~~~~g~~~~~~~~~~ 295 (785)
..||+|+++.|+++-++. .|-|+++-.-+.+....+.|.+.++ +.... .....
T Consensus 34 ~~i~~LE~~lg~~Lf~R~---------~~~~~lT~~G~~l~~~a~~~l~~~~~~~~~~~~~--------------~~~~~ 90 (291)
T 3szp_A 34 RRIQALEDSLNLRLLNRH---------ARKLTLTEAGERFYKDCSPLLERLASMTEEITDE--------------CRGAS 90 (291)
T ss_dssp HHHHHHHHHHTCCCEEEE---------TTEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTS--------------CCSSC
T ss_pred HHHHHHHHHhCCceEeec---------CCCcccCHhHHHHHHHHHHHHHHHHHHHHHHHhc--------------ccCCc
Confidence 468999999999998874 3466777654444443333333333 22110 00123
Q ss_pred cEEEEEecCCccceeecCCchHHHHHHHHh-CCeEEE
Q 003933 296 EQVEIKVPNEKVGLIIGRGGETIKGLQTRS-GARIQV 331 (785)
Q Consensus 296 ~~~~i~VP~~~vG~VIGKgGetIK~Iq~~T-GArIqI 331 (785)
.+++|-+.......++ -..|+.++++. +++|+|
T Consensus 91 ~~l~Ig~~~~~~~~~l---~~~l~~f~~~~P~v~i~~ 124 (291)
T 3szp_A 91 GRIRISAPSNLTKRMM---MPMFNAFMEKYPDIHIEL 124 (291)
T ss_dssp EEEEEEEETTTHHHHT---HHHHHHHHHHCTTEEEEE
T ss_pred eEEEEeccHHHHHHHH---HHHHHHHHHHCCCeEEEE
Confidence 4566666666554444 24566666554 666664
No 152
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=22.95 E-value=23 Score=37.41 Aligned_cols=37 Identities=11% Similarity=0.016 Sum_probs=31.9
Q ss_pred EEEEecCCccceeecCCchHHHHHHHHhCCeEEEccC
Q 003933 202 RKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRD 238 (785)
Q Consensus 202 ~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~ 238 (785)
+-|.|+..+|-+||++++..|+.|.+.+++.|.|-.+
T Consensus 212 ~l~~Vs~~lvrrl~~~~~~~l~~L~~~~~~eI~vG~N 248 (289)
T 2nn6_G 212 LLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFGMN 248 (289)
T ss_dssp EEECCCHHHHHHHHCTTCSHHHHTTCSSSCCCEEETT
T ss_pred EEEEEChHHhhhhhcCchhHHHHhcccCCeEEEEECC
Confidence 4577788899999999999999999999999988643
No 153
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=22.57 E-value=5e+02 Score=25.73 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=20.8
Q ss_pred ccEEEEEcCHHHHHHHHHHHHHHH
Q 003933 345 ERIVRVTGDMRQIEIAQEMIKEVL 368 (785)
Q Consensus 345 er~VtIsG~~eqVe~Ak~lI~~ll 368 (785)
.+.|.|+|++..|++++++|..+=
T Consensus 144 ~N~Liv~g~~~~i~~i~~li~~lD 167 (241)
T 3ezj_A 144 SNVIMLTGRASVVERLTEVIQRVD 167 (241)
T ss_dssp TTEEEEEEEHHHHHHHHHHHHHHH
T ss_pred ccEEEEECCHHHHHHHHHHHHHhC
Confidence 458999999999999999998653
No 154
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase, ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus horikoshii}
Probab=22.37 E-value=56 Score=35.22 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=67.9
Q ss_pred CCCCcceEecc-cHHHHHHHHHHHHHHHHhhccCCC-CcccccccchhhccCCccEEEEEecCCccceeecCC--chHHH
Q 003933 244 HAATRPVEIIG-TLSNIDKAEKLINAVIAEADAGGS-PSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRG--GETIK 319 (785)
Q Consensus 244 ~s~eRiV~I~G-t~e~V~kA~~lI~elI~e~~~gg~-p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGKg--GetIK 319 (785)
++++-+|.++| +.+.+..|++.+..+|.+. ++. .....................|.+..+.+.+|||.. -+.|+
T Consensus 227 ~T~~iliE~ag~d~~~~~~al~~~~~ll~e~--gg~v~~v~~~~~~~~~~~~~~~~~~i~~~~~~i~~~lG~~l~~~~i~ 304 (348)
T 2cxi_A 227 DTKNVFIDVTGWKLEKVMLALNVMVTALAER--GGKIRSVRVVYKDFEIETPDLTPKEFEVELDYIRKLSGLELNDGEIK 304 (348)
T ss_dssp TCCSEEEEEEESCHHHHHHHHHHHHHHHHTT--TCEEEEEEEECSSCEEEECCCCCEEEEEEHHHHHHHHTCCCCHHHHH
T ss_pred CCCEEEEEEecCCHHHHHHHHHHHHHHHHHh--CCCccceEEEecCcccccCCCCCeEEEecHHHHHHHhCCCCCHHHHH
Confidence 34455667778 6678899999999999886 221 111110000000001122336777778888888875 57899
Q ss_pred HHHHHhCCeEEEecCCCCCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHh
Q 003933 320 GLQTRSGARIQVLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLS 369 (785)
Q Consensus 320 ~Iq~~TGArIqI~i~~~lP~~~~s~er~VtIsG~~eqVe~Ak~lI~~ll~ 369 (785)
+|-++.|+.+.+ .. +.-.|+|=-....|.+...+|++++.
T Consensus 305 ~iL~~lg~~~~~-~~---------~~~~V~vP~~R~DI~~~~DliEEVaR 344 (348)
T 2cxi_A 305 ELLEKMMYEVEI-SR---------GRAKLKYPAFRDDIMHARDILEDVLI 344 (348)
T ss_dssp HHHHHTTCEEEE-ET---------TEEEEEECTTCCCCCSHHHHHHHHHH
T ss_pred HHHHHcCCeEEe-CC---------CeEEEECCCCcccCCcccHHHHHhHH
Confidence 999999999972 11 11224443334566667778877653
No 155
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=22.06 E-value=25 Score=40.89 Aligned_cols=61 Identities=26% Similarity=0.319 Sum_probs=39.9
Q ss_pred hhhhcccchhhhccCCC--CCCCCCCCCCeEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEcc
Q 003933 173 VEPSNVVPQQVVDNSKS--DDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITR 237 (785)
Q Consensus 173 VE~A~~lI~~ii~~~~~--~~p~~~~~~~~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k 237 (785)
-++|+++|.+++-.+.. +-...+. +-+|+|-..+-|.+|||.|+++++|.++++-+..+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~ 139 (640)
T 2xr1_A 77 PEDSISIIEEVVPKESVISSYYFDPD----SGEVIIEAEKPGLVIGKHGATLREITKQIGWIPKVVR 139 (640)
T ss_dssp HHHHHHHHHHHSCGGGCEEEEEECTT----TSEEEEEESSHHHHHCSSSHHHHHHHHHHCSEEEEEE
T ss_pred HHHHHHHHHHhCCCccCccceeecCC----CceEEEEeCCCCcccccchhhHHHHHhccCccccccc
Confidence 45677777777732211 1111212 2244554556689999999999999999999877765
No 156
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.02 E-value=26 Score=35.37 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=26.3
Q ss_pred EEEEEecCCccceeecCCchHHHHHH----HHhC---CeEEEc
Q 003933 201 SRKIEVPNNKVGVLIGKAGDTIRYLQ----YNSG---AKIQIT 236 (785)
Q Consensus 201 t~~IlVP~~~VG~IIGk~G~tIK~Iq----eeTG---AkI~I~ 236 (785)
..+|.|-..+-|.|||++|..|++|+ +.++ ..|.|.
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~~~v~I~i~ 83 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEVE 83 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSCSSCEEEEE
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCceEEEEE
Confidence 34666666788999999999998875 4565 455554
No 157
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=21.03 E-value=85 Score=27.69 Aligned_cols=63 Identities=11% Similarity=0.018 Sum_probs=40.1
Q ss_pred eEEEEEecCCccceeecCCchHHHHHHHHhCCeEEEccCCC-CCCC--CCCcceEecccHHHHHHHHHHHHH
Q 003933 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDAD-ADPH--AATRPVEIIGTLSNIDKAEKLINA 268 (785)
Q Consensus 200 ~t~~IlVP~~~VG~IIGk~G~tIK~IqeeTGAkI~I~k~~d-~~p~--s~eRiV~I~Gt~e~V~kA~~lI~e 268 (785)
..++|.+..+.+ ..-.|.+|-++++++|+|....- ..-+ --..+|.|.|+.+.+++|++.|.+
T Consensus 22 ~lvrL~f~g~~~------~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 87 (106)
T 3dhx_A 22 PMLRLEFTGQSV------DAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQE 87 (106)
T ss_dssp EEEEEEEEEECT------TCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEEEcCCcc------ChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 455665543332 23468999999999999874211 0000 012467889999999888887654
Done!