BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003934
         (785 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6ZQ03|FNBP4_MOUSE Formin-binding protein 4 OS=Mus musculus GN=Fnbp4 PE=1 SV=2
          Length = 1031

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 652  SLVDKWKAAKEELNENEEDEPENAYEILERKRQREIEEWRAQQIASGEAKDNANFQPLGG 711
            SLV KW++ + EL+E +     ++ E  E   Q+ IEEW+ QQ+ SG A+ NANF+ L  
Sbjct: 959  SLVKKWQSIQRELDEEDNSS--SSEEDRESTAQKRIEEWKQQQLVSGLAERNANFEALPE 1016

Query: 712  DWREKVKRRR 721
            DWR ++KRR+
Sbjct: 1017 DWRARLKRRK 1026



 Score = 43.5 bits (101), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 25  WRMVLHEESKQYYYWNVETGETSWEIPQVLA 55
           W+ V  E +  YYYWN +T E +WE+PQ LA
Sbjct: 224 WQEVWDENTGCYYYWNTQTNEVTWELPQYLA 254



 Score = 33.5 bits (75), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 757 WQAYWDESSKQIYYGNTITSKTTWTRP 783
           WQ  WDE++   YY NT T++ TW  P
Sbjct: 224 WQEVWDENTGCYYYWNTQTNEVTWELP 250


>sp|Q8N3X1|FNBP4_HUMAN Formin-binding protein 4 OS=Homo sapiens GN=FNBP4 PE=1 SV=3
          Length = 1017

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 2/70 (2%)

Query: 652  SLVDKWKAAKEELNENEEDEPENAYEILERKRQREIEEWRAQQIASGEAKDNANFQPLGG 711
            SLV KW++ + EL+E +     ++ E  E   Q+ IEEW+ QQ+ SG A+ NANF+ L  
Sbjct: 945  SLVKKWQSIQRELDEEDNSS--SSEEDRESTAQKRIEEWKQQQLVSGMAERNANFEALPE 1002

Query: 712  DWREKVKRRR 721
            DWR ++KRR+
Sbjct: 1003 DWRARLKRRK 1012



 Score = 43.5 bits (101), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 18  IGDVSSGWRMVLHEESKQYYYWNVETGETSWEIPQVLA 55
           +G     W+ V  E +  YYYWN +T E +WE+PQ LA
Sbjct: 213 VGIEMGDWQEVWDENTGCYYYWNTQTNEVTWELPQYLA 250



 Score = 33.5 bits (75), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 757 WQAYWDESSKQIYYGNTITSKTTWTRP 783
           WQ  WDE++   YY NT T++ TW  P
Sbjct: 220 WQEVWDENTGCYYYWNTQTNEVTWELP 246


>sp|Q5E7L5|IF2_VIBF1 Translation initiation factor IF-2 OS=Vibrio fischeri (strain ATCC
           700601 / ES114) GN=infB PE=3 SV=1
          Length = 893

 Score = 35.4 bits (80), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 17/150 (11%)

Query: 627 VQSKVRNKKRTVAVAPSLRSNKKVSSLVDKWKAAKEELNENEEDEPENAYEILERKRQRE 686
           VQ +VR KKRT   A +L   KK   L    KA  EE  + + D  E A   LE+K QRE
Sbjct: 87  VQVEVR-KKRTYVKASALEEEKKAEQL----KAEAEE--QAKRDAEEAAVRELEQKAQRE 139

Query: 687 IEEW-----RAQQIASGEAKDNANFQPLGGDWREKVKRRRAQLAKEAAETPP--EAEADQ 739
            EE       A+  A  EA++ A  +      ++++ ++  Q  KEA E     E EA +
Sbjct: 140 AEEQAKREAEAEAKAKREAEEKAK-RAEADKAKKEMTKKNEQAKKEAEELKARQELEATR 198

Query: 740 K--QEKPDLVDLSKDLPSGWQAYWDESSKQ 767
           K   E   LV+ ++ L    +A W E  ++
Sbjct: 199 KAEAEAAKLVEEARKLAEENEARWKEEEQK 228


>sp|B5FA79|IF2_VIBFM Translation initiation factor IF-2 OS=Vibrio fischeri (strain MJ11)
           GN=infB PE=3 SV=1
          Length = 893

 Score = 35.0 bits (79), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 71/150 (47%), Gaps = 17/150 (11%)

Query: 627 VQSKVRNKKRTVAVAPSLRSNKKVSSLVDKWKAAKEELNENEEDEPENAYEILERKRQRE 686
           VQ +VR KKRT   A +L   KK   L    KA  EE  + + D  E A   LE+K QRE
Sbjct: 87  VQVEVR-KKRTYVKASALEEEKKAEQL----KAEAEE--QAKRDAEEAAVRELEQKAQRE 139

Query: 687 IEEW-----RAQQIASGEAKDNANFQPLGGDWREKVKRRRAQLAKEAAETPP--EAEADQ 739
            EE       A+  A  EA++ A  +      ++++ ++  Q  KEA E     E EA +
Sbjct: 140 AEEQAKREAEAEAKAKREAEEKAK-RAEADKAKKEMTKKNEQAKKEADELKARQELEATR 198

Query: 740 K--QEKPDLVDLSKDLPSGWQAYWDESSKQ 767
           K   E   LV+ ++ L    +A W E  ++
Sbjct: 199 KAEAEAAKLVEEARKLAEENEARWKEEEQK 228


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.125    0.358 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 318,852,970
Number of Sequences: 539616
Number of extensions: 15230183
Number of successful extensions: 100530
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 1244
Number of HSP's that attempted gapping in prelim test: 68634
Number of HSP's gapped (non-prelim): 16040
length of query: 785
length of database: 191,569,459
effective HSP length: 126
effective length of query: 659
effective length of database: 123,577,843
effective search space: 81437798537
effective search space used: 81437798537
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 65 (29.6 bits)