Query 003934
Match_columns 785
No_of_seqs 77 out of 79
Neff 3.1
Searched_HMMs 46136
Date Thu Mar 28 14:35:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003934.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003934hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00397 WW: WW domain; Inter 99.0 2.2E-10 4.7E-15 83.9 2.7 31 753-783 1-31 (31)
2 smart00456 WW Domain with 2 co 98.7 1E-08 2.2E-13 74.1 2.9 31 753-784 1-31 (32)
3 cd00201 WW Two conserved trypt 98.5 1.1E-07 2.3E-12 67.8 2.8 30 754-784 1-30 (31)
4 PF00397 WW: WW domain; Inter 98.3 8.4E-07 1.8E-11 65.1 3.4 29 23-51 3-31 (31)
5 smart00456 WW Domain with 2 co 97.8 2.1E-05 4.4E-10 57.0 3.0 30 22-52 2-31 (32)
6 cd00201 WW Two conserved trypt 97.6 4.5E-05 9.7E-10 54.3 3.0 29 23-52 2-30 (31)
7 KOG1924 RhoA GTPase effector D 96.6 0.005 1.1E-07 72.7 7.7 10 369-378 436-445 (1102)
8 KOG1924 RhoA GTPase effector D 96.5 0.0087 1.9E-07 70.8 8.8 22 120-141 134-155 (1102)
9 KOG3259 Peptidyl-prolyl cis-tr 92.3 0.063 1.4E-06 53.4 1.3 35 22-56 8-42 (163)
10 COG5104 PRP40 Splicing factor 91.5 0.078 1.7E-06 60.0 1.1 28 756-784 57-84 (590)
11 KOG1891 Proline binding protei 91.0 0.13 2.7E-06 54.3 2.0 32 752-784 128-159 (271)
12 PRK15319 AIDA autotransporter- 90.7 0.37 8.1E-06 62.0 5.9 15 636-650 1886-1900(2039)
13 PRK09752 adhesin; Provisional 89.4 0.35 7.6E-06 60.1 4.2 15 636-650 1105-1119(1250)
14 KOG4031 Vesicle coat protein c 89.0 0.48 1E-05 49.3 4.3 44 651-694 105-148 (216)
15 KOG1891 Proline binding protei 87.3 0.37 7.9E-06 51.0 2.3 34 750-784 91-124 (271)
16 COG5178 PRP8 U5 snRNP spliceos 87.1 0.47 1E-05 58.8 3.3 17 426-442 3-19 (2365)
17 PRK09752 adhesin; Provisional 85.9 0.69 1.5E-05 57.7 3.9 12 229-240 693-704 (1250)
18 COG5104 PRP40 Splicing factor 83.7 0.28 6.1E-06 55.7 -0.6 38 18-56 10-47 (590)
19 PRK15319 AIDA autotransporter- 81.8 2 4.3E-05 55.9 5.5 12 228-239 1380-1391(2039)
20 KOG1925 Rac1 GTPase effector F 80.0 2.1 4.5E-05 49.9 4.4 18 683-700 603-620 (817)
21 KOG1923 Rac1 GTPase effector F 79.3 5.8 0.00012 48.1 7.8 27 227-253 148-177 (830)
22 KOG4672 Uncharacterized conser 78.0 20 0.00043 41.2 11.0 20 380-399 278-297 (487)
23 KOG1830 Wiskott Aldrich syndro 77.4 28 0.0006 40.3 11.9 101 350-450 232-340 (518)
24 COG5178 PRP8 U5 snRNP spliceos 74.6 2.3 4.9E-05 53.3 2.9 18 438-455 5-22 (2365)
25 cd02987 Phd_like_Phd Phosducin 73.4 4.7 0.0001 40.0 4.4 47 647-693 6-54 (175)
26 KOG1029 Endocytic adaptor prot 70.1 3.2 6.9E-05 50.3 2.7 62 632-694 316-390 (1118)
27 KOG3170 Conserved phosducin-li 68.7 5.9 0.00013 41.8 4.0 36 662-697 53-88 (240)
28 KOG0155 Transcription factor C 64.0 5.6 0.00012 46.5 3.0 27 757-784 116-142 (617)
29 PRK15313 autotransport protein 60.2 14 0.0003 46.0 5.5 19 632-650 794-812 (955)
30 KOG1925 Rac1 GTPase effector F 59.5 15 0.00032 43.3 5.3 7 444-450 249-255 (817)
31 PHA03247 large tegument protei 58.1 39 0.00086 46.3 9.2 17 650-666 3111-3127(3151)
32 KOG3671 Actin regulatory prote 57.7 24 0.00052 41.4 6.6 32 118-151 22-53 (569)
33 PF12905 Glyco_hydro_101: Endo 57.0 4.9 0.00011 45.8 1.1 28 32-59 381-408 (425)
34 PHA03247 large tegument protei 52.3 28 0.0006 47.6 6.6 21 22-42 2170-2190(3151)
35 KOG4334 Uncharacterized conser 50.1 11 0.00024 44.1 2.4 33 750-783 152-184 (650)
36 PF06936 Selenoprotein_S: Sele 47.9 13 0.00028 38.3 2.4 20 676-695 108-127 (190)
37 KOG4590 Signal transduction pr 47.1 1.2E+02 0.0027 34.9 9.9 11 250-260 45-55 (409)
38 PF01690 PLRV_ORF5: Potato lea 45.8 17 0.00036 42.1 3.0 12 436-447 6-17 (465)
39 PF04625 DEC-1_N: DEC-1 protei 45.1 39 0.00085 38.0 5.5 15 709-723 341-355 (407)
40 KOG3209 WW domain-containing p 44.7 13 0.00028 45.2 2.0 31 752-783 222-252 (984)
41 cd00122 MBD MeCP2, MBD1, MBD2, 42.9 19 0.00041 30.4 2.2 28 748-775 1-34 (62)
42 KOG0155 Transcription factor C 40.9 22 0.00048 41.9 3.0 34 22-56 113-146 (617)
43 KOG0150 Spliceosomal protein F 40.7 13 0.00028 41.3 1.1 25 32-56 159-183 (336)
44 PF01086 Clathrin_lg_ch: Clath 40.5 20 0.00044 37.3 2.4 44 651-694 111-154 (225)
45 KOG3427 Polyglutamine tract-bi 40.3 6.5 0.00014 41.3 -1.1 32 24-55 11-42 (222)
46 KOG1923 Rac1 GTPase effector F 39.7 65 0.0014 39.7 6.6 14 436-449 298-311 (830)
47 KOG3671 Actin regulatory prote 39.6 37 0.00079 40.0 4.4 12 339-350 244-255 (569)
48 KOG1922 Rho GTPase effector BN 32.2 80 0.0017 38.2 5.9 18 648-665 688-705 (833)
49 cd02988 Phd_like_VIAF Phosduci 31.3 52 0.0011 33.4 3.6 19 677-695 59-77 (192)
50 smart00391 MBD Methyl-CpG bind 31.2 34 0.00075 30.5 2.1 27 748-774 3-36 (77)
51 COG2941 CAT5 Ubiquinone biosyn 31.1 9.9 0.00021 39.7 -1.5 64 205-278 79-142 (204)
52 PF15232 DUF4585: Domain of un 29.3 38 0.00083 30.8 2.0 17 25-41 8-24 (75)
53 KOG0917 Uncharacterized conser 28.4 2.8E+02 0.006 31.1 8.5 16 435-450 241-256 (338)
54 PHA03211 serine/threonine kina 27.8 70 0.0015 36.2 4.2 11 428-438 41-51 (461)
55 PF12526 DUF3729: Protein of u 26.6 2.4E+02 0.0053 27.4 6.9 29 430-458 56-86 (113)
56 KOG2199 Signal transducing ada 24.1 2E+02 0.0042 33.6 6.7 44 451-494 413-456 (462)
57 KOG4286 Dystrophin-like protei 22.9 29 0.00063 42.5 0.1 32 752-784 349-380 (966)
58 PF01429 MBD: Methyl-CpG bindi 21.8 67 0.0015 28.2 2.1 26 748-773 6-38 (77)
59 PRK14950 DNA polymerase III su 21.4 1.9E+02 0.0041 34.1 6.2 59 410-471 390-448 (585)
60 KOG0940 Ubiquitin protein liga 20.1 65 0.0014 36.2 2.1 33 752-784 60-95 (358)
No 1
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.99 E-value=2.2e-10 Score=83.88 Aligned_cols=31 Identities=45% Similarity=1.021 Sum_probs=30.0
Q ss_pred CCccccccccCCCCceEEEeccccceeccCC
Q 003934 753 LPSGWQAYWDESSKQIYYGNTITSKTTWTRP 783 (785)
Q Consensus 753 LP~gWqa~~D~~tg~vYY~N~~T~eTtW~RP 783 (785)
||+||++++|+.+|++||+|..|++|+|+||
T Consensus 1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 8999999999779999999999999999998
No 2
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=98.70 E-value=1e-08 Score=74.12 Aligned_cols=31 Identities=39% Similarity=0.802 Sum_probs=30.2
Q ss_pred CCccccccccCCCCceEEEeccccceeccCCC
Q 003934 753 LPSGWQAYWDESSKQIYYGNTITSKTTWTRPT 784 (785)
Q Consensus 753 LP~gWqa~~D~~tg~vYY~N~~T~eTtW~RP~ 784 (785)
||.||+.++|++ |++||+|..|++++|++|.
T Consensus 1 lp~gW~~~~~~~-g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 1 LPPGWEERKDPD-GRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCCEEEECCC-CCEEEEECCCCCEEcCCCC
Confidence 799999999999 9999999999999999996
No 3
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=98.46 E-value=1.1e-07 Score=67.81 Aligned_cols=30 Identities=40% Similarity=1.009 Sum_probs=29.1
Q ss_pred CccccccccCCCCceEEEeccccceeccCCC
Q 003934 754 PSGWQAYWDESSKQIYYGNTITSKTTWTRPT 784 (785)
Q Consensus 754 P~gWqa~~D~~tg~vYY~N~~T~eTtW~RP~ 784 (785)
|.||+.++|++ |++||+|+.|++|+|++|.
T Consensus 1 p~~W~~~~~~~-g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 1 PPGWEERWDPD-GRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCCEEEECCC-CCEEEEECCCCCEeCCCCC
Confidence 78999999999 9999999999999999996
No 4
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=98.25 E-value=8.4e-07 Score=65.13 Aligned_cols=29 Identities=45% Similarity=0.977 Sum_probs=27.0
Q ss_pred CCceEEEeccCcceEEEEccccccccccC
Q 003934 23 SGWRMVLHEESKQYYYWNVETGETSWEIP 51 (785)
Q Consensus 23 ~~w~~~~~e~s~~~yywn~~tgetswe~p 51 (785)
.||+++++.++|+.||||..||+++|+.|
T Consensus 3 ~gW~~~~~~~~g~~YY~N~~t~~s~W~~P 31 (31)
T PF00397_consen 3 PGWEEYFDPDSGRPYYYNHETGESQWERP 31 (31)
T ss_dssp TTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred cCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence 47999999779999999999999999987
No 5
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=97.77 E-value=2.1e-05 Score=56.95 Aligned_cols=30 Identities=40% Similarity=0.815 Sum_probs=28.0
Q ss_pred cCCceEEEeccCcceEEEEccccccccccCc
Q 003934 22 SSGWRMVLHEESKQYYYWNVETGETSWEIPQ 52 (785)
Q Consensus 22 ~~~w~~~~~e~s~~~yywn~~tgetswe~p~ 52 (785)
-.||++.++++ |+.||+|+.|++++|+.|.
T Consensus 2 p~gW~~~~~~~-g~~yy~n~~t~~s~W~~P~ 31 (32)
T smart00456 2 PPGWEERKDPD-GRPYYYNHETKETQWEKPR 31 (32)
T ss_pred CCCCEEEECCC-CCEEEEECCCCCEEcCCCC
Confidence 36899999999 9999999999999999995
No 6
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=97.63 E-value=4.5e-05 Score=54.33 Aligned_cols=29 Identities=38% Similarity=0.827 Sum_probs=27.3
Q ss_pred CCceEEEeccCcceEEEEccccccccccCc
Q 003934 23 SGWRMVLHEESKQYYYWNVETGETSWEIPQ 52 (785)
Q Consensus 23 ~~w~~~~~e~s~~~yywn~~tgetswe~p~ 52 (785)
.+|++..+.+ |+.||+|..|++++|+.|.
T Consensus 2 ~~W~~~~~~~-g~~yy~n~~t~~s~W~~P~ 30 (31)
T cd00201 2 PGWEERWDPD-GRVYYYNHNTKETQWEDPR 30 (31)
T ss_pred CCCEEEECCC-CCEEEEECCCCCEeCCCCC
Confidence 5899999999 9999999999999999995
No 7
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.59 E-value=0.005 Score=72.69 Aligned_cols=10 Identities=10% Similarity=0.584 Sum_probs=7.8
Q ss_pred ccccCCCCCC
Q 003934 369 SISKSGYNSE 378 (785)
Q Consensus 369 ~~~~~~~~~D 378 (785)
-+|+.|.|+|
T Consensus 436 vlHr~~~DPd 445 (1102)
T KOG1924|consen 436 VLHRTGMDPD 445 (1102)
T ss_pred HHhcCCCCCC
Confidence 4688888888
No 8
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.49 E-value=0.0087 Score=70.80 Aligned_cols=22 Identities=23% Similarity=0.160 Sum_probs=9.2
Q ss_pred ccccccccCCCceeeecCCccc
Q 003934 120 QANERFEGSKGEVMKYGNGTVG 141 (785)
Q Consensus 120 q~n~~~e~~~~d~~~~~n~~~~ 141 (785)
|.|+..+..+-=++.+.+|+++
T Consensus 134 s~ne~~~~s~eyV~~l~~gl~t 155 (1102)
T KOG1924|consen 134 SDNEAKGSSPEYVVELRSGLST 155 (1102)
T ss_pred hhhhhccCChHHHHHHHccccc
Confidence 3344444433333344455444
No 9
>KOG3259 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=0.063 Score=53.39 Aligned_cols=35 Identities=34% Similarity=0.736 Sum_probs=31.3
Q ss_pred cCCceEEEeccCcceEEEEccccccccccCccccc
Q 003934 22 SSGWRMVLHEESKQYYYWNVETGETSWEIPQVLAQ 56 (785)
Q Consensus 22 ~~~w~~~~~e~s~~~yywn~~tgetswe~p~~l~~ 56 (785)
-.+|..+|.-.+|+-||.|++|+|--||-|..-+.
T Consensus 8 P~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~~ 42 (163)
T KOG3259|consen 8 PPGWEKRMSRSSGRPYYFNTETNESQWERPSGTSK 42 (163)
T ss_pred CchhheeccccCCCcceeccccchhhccCCCcccc
Confidence 35899999999999999999999999999976443
No 10
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=91.48 E-value=0.078 Score=59.99 Aligned_cols=28 Identities=29% Similarity=0.730 Sum_probs=23.3
Q ss_pred cccccccCCCCceEEEeccccceeccCCC
Q 003934 756 GWQAYWDESSKQIYYGNTITSKTTWTRPT 784 (785)
Q Consensus 756 gWqa~~D~~tg~vYY~N~~T~eTtW~RP~ 784 (785)
+|.+|--.. |+|||+|..|+||.|++|.
T Consensus 57 ~Wke~~Tad-GkvyyyN~~TREs~W~iP~ 84 (590)
T COG5104 57 PWKECRTAD-GKVYYYNSITRESRWKIPP 84 (590)
T ss_pred hHHHHhhcC-CceEEecCccccccccCCh
Confidence 588776544 9999999999999999984
No 11
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=90.96 E-value=0.13 Score=54.27 Aligned_cols=32 Identities=28% Similarity=0.672 Sum_probs=29.5
Q ss_pred CCCccccccccCCCCceEEEeccccceeccCCC
Q 003934 752 DLPSGWQAYWDESSKQIYYGNTITSKTTWTRPT 784 (785)
Q Consensus 752 ~LP~gWqa~~D~~tg~vYY~N~~T~eTtW~RP~ 784 (785)
+||+||+..+|+. .-+||+|..++.|....||
T Consensus 128 gLppGW~rv~s~e-~GtyY~~~~~k~tQy~HPc 159 (271)
T KOG1891|consen 128 GLPPGWKRVFSPE-KGTYYYHEEMKRTQYEHPC 159 (271)
T ss_pred cCCcchhhccccc-cceeeeecccchhhhcCCC
Confidence 8999999999999 5579999999999999997
No 12
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=90.69 E-value=0.37 Score=61.98 Aligned_cols=15 Identities=27% Similarity=0.224 Sum_probs=8.3
Q ss_pred ccccccccccccccc
Q 003934 636 RTVAVAPSLRSNKKV 650 (785)
Q Consensus 636 ra~a~~ssL~s~KK~ 650 (785)
++.+.+.||+..+++
T Consensus 1886 dS~G~taSLEaGYrf 1900 (2039)
T PRK15319 1886 DSTANAVSLETGYRY 1900 (2039)
T ss_pred eeEEEEEEEEcceee
Confidence 344556666665544
No 13
>PRK09752 adhesin; Provisional
Probab=89.39 E-value=0.35 Score=60.11 Aligned_cols=15 Identities=13% Similarity=0.204 Sum_probs=8.7
Q ss_pred ccccccccccccccc
Q 003934 636 RTVAVAPSLRSNKKV 650 (785)
Q Consensus 636 ra~a~~ssL~s~KK~ 650 (785)
+..+.+.||++.+++
T Consensus 1105 ~S~G~TASLEaGY~f 1119 (1250)
T PRK09752 1105 HSSGIIASLEAGYQW 1119 (1250)
T ss_pred eeeeEEEEEEccccc
Confidence 444556667765544
No 14
>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.04 E-value=0.48 Score=49.32 Aligned_cols=44 Identities=25% Similarity=0.530 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHhhhcccCCcccHHHHHHHHHhHHHHHHHHHH
Q 003934 651 SSLVDKWKAAKEELNENEEDEPENAYEILERKRQREIEEWRAQQ 694 (785)
Q Consensus 651 sSLVdKW~a~qeEl~EeEEee~e~~~E~ler~rqreIEeWr~qQ 694 (785)
+--|.||+.-|+++-++-++.+++-.+.+..+.+|+|++|-++|
T Consensus 105 pE~IRkWkeeQ~~rl~ekD~~sek~k~ElrekAkKelddwy~~~ 148 (216)
T KOG4031|consen 105 PEKIRKWKEEQMKRLQEKDEASEKLKEELREKAKKELDDWYDQQ 148 (216)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35699999999885555444455566778889999999997664
No 15
>KOG1891 consensus Proline binding protein WW45 [General function prediction only]
Probab=87.34 E-value=0.37 Score=50.96 Aligned_cols=34 Identities=26% Similarity=0.624 Sum_probs=30.6
Q ss_pred CCCCCccccccccCCCCceEEEeccccceeccCCC
Q 003934 750 SKDLPSGWQAYWDESSKQIYYGNTITSKTTWTRPT 784 (785)
Q Consensus 750 s~~LP~gWqa~~D~~tg~vYY~N~~T~eTtW~RP~ 784 (785)
+.+||+||-.-|--. ||.||..+.++.|-|..|-
T Consensus 91 dlPLPpgWav~~T~~-grkYYIDHn~~tTHW~HPl 124 (271)
T KOG1891|consen 91 DLPLPPGWAVEFTTE-GRKYYIDHNNRTTHWVHPL 124 (271)
T ss_pred cCCCCCCcceeeEec-CceeEeecCCCcccccChh
Confidence 347999999999877 9999999999999999983
No 16
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=87.14 E-value=0.47 Score=58.82 Aligned_cols=17 Identities=47% Similarity=0.794 Sum_probs=9.9
Q ss_pred CCCCCCCCCCCCCCCCC
Q 003934 426 SLTSEDVPVVPPPPDEE 442 (785)
Q Consensus 426 s~~ped~~~pPPPPe~E 442 (785)
++||+-.++|||||.=|
T Consensus 3 ~lppg~ppppppppg~e 19 (2365)
T COG5178 3 SLPPGNPPPPPPPPGFE 19 (2365)
T ss_pred CCCCCCCcccccCCCCC
Confidence 45566555566666655
No 17
>PRK09752 adhesin; Provisional
Probab=85.93 E-value=0.69 Score=57.69 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=7.3
Q ss_pred ccchhhccCCCC
Q 003934 229 DFKSLLACGSSI 240 (785)
Q Consensus 229 D~~sL~sygSSL 240 (785)
|..-++-|.|||
T Consensus 693 ~~~~~~~~~~~~ 704 (1250)
T PRK09752 693 DVADIIPYASSL 704 (1250)
T ss_pred chhhcccchhee
Confidence 455566666664
No 18
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=83.66 E-value=0.28 Score=55.71 Aligned_cols=38 Identities=34% Similarity=0.732 Sum_probs=32.2
Q ss_pred eccccCCceEEEeccCcceEEEEccccccccccCccccc
Q 003934 18 IGDVSSGWRMVLHEESKQYYYWNVETGETSWEIPQVLAQ 56 (785)
Q Consensus 18 ~~~v~~~w~~~~~e~s~~~yywn~~tgetswe~p~~l~~ 56 (785)
-|.+.+.|+++-.+ +|+.||.|++||+-+||-|.-|..
T Consensus 10 s~~~~s~w~e~k~~-dgRiYYYN~~T~kS~weKPkell~ 47 (590)
T COG5104 10 SGEARSEWEELKAP-DGRIYYYNKRTGKSSWEKPKELLK 47 (590)
T ss_pred cccHHHHHHHhhCC-CCceEEEecccccccccChHHHhc
Confidence 47788999988664 788999999999999999966665
No 19
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=81.83 E-value=2 Score=55.90 Aligned_cols=12 Identities=33% Similarity=0.340 Sum_probs=6.6
Q ss_pred cccchhhccCCC
Q 003934 228 SDFKSLLACGSS 239 (785)
Q Consensus 228 SD~~sL~sygSS 239 (785)
+||-+|....-+
T Consensus 1380 ~df~~~~~~~~~ 1391 (2039)
T PRK15319 1380 GDFTSLTMNLTD 1391 (2039)
T ss_pred cccceeeecccC
Confidence 566666664433
No 20
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=80.04 E-value=2.1 Score=49.85 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=13.5
Q ss_pred HhHHHHHHHHHHHHhccc
Q 003934 683 RQREIEEWRAQQIASGEA 700 (785)
Q Consensus 683 rqreIEeWr~qQl~sG~A 700 (785)
-+|-|-+|.-=-|-.|-.
T Consensus 603 hrr~~NRfHSFLLy~Gy~ 620 (817)
T KOG1925|consen 603 HRRVCNRFHSFLLYLGYT 620 (817)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 345678898888888873
No 21
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=79.28 E-value=5.8 Score=48.06 Aligned_cols=27 Identities=26% Similarity=0.392 Sum_probs=18.3
Q ss_pred ecccchhhccC---CCCchhhhhhHHHHHH
Q 003934 227 LSDFKSLLACG---SSILPFWLHSERQLQR 253 (785)
Q Consensus 227 ~SD~~sL~syg---SSLLPfW~Hser~lK~ 253 (785)
++|+++|.-+. +.+|=|=.|.+.+|-.
T Consensus 148 ~~dv~all~ds~~k~~~le~v~~~~~~ish 177 (830)
T KOG1923|consen 148 LTDVRALLRDSFQKTFVLEFVETPADQISH 177 (830)
T ss_pred HHHHHHhcccchhhhHHHHhhcchhhhhhH
Confidence 46777776543 5677777777777744
No 22
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=78.02 E-value=20 Score=41.22 Aligned_cols=20 Identities=20% Similarity=0.053 Sum_probs=10.1
Q ss_pred CccccccccccccCCCCCcc
Q 003934 380 DVDMDVDMEVEDSVPEGNTR 399 (785)
Q Consensus 380 DVDMDVDmEVde~~~~~~~~ 399 (785)
|.|-|.|..-+|+|..+.+.
T Consensus 278 ~~d~~dds~~eden~~~~~~ 297 (487)
T KOG4672|consen 278 IPDNEDDSRPEDENASSFQN 297 (487)
T ss_pred CCccccccchhhhccccccc
Confidence 44444444445566555555
No 23
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=77.35 E-value=28 Score=40.29 Aligned_cols=101 Identities=26% Similarity=0.374 Sum_probs=43.9
Q ss_pred cCCcccCcccccCccccCCccccCCCCCCCCccccccccc----cccC-CCCCcccccCCCCCcCCCCCCCCCCCCCCCC
Q 003934 350 ARHLESDGEQVNGTVIPHESISKSGYNSEGDVDMDVDMEV----EDSV-PEGNTRIGETSSAKDFATLEQPVQPNPPADH 424 (785)
Q Consensus 350 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~D~DVDMDVDmEV----de~~-~~~~~~~~~~~~~k~~~p~eq~~~P~pp~~~ 424 (785)
....+..++.++|....-..--++-|-.-|-.-|-+.|.+ .... +..+|.-...+..+...-.-.++.|||++.-
T Consensus 232 ~~~p~~~~~~~dgs~~~lp~~~~nq~~s~~~~p~~~~~~~pp~~~~~~~~~~~q~g~g~a~~r~~~n~~rPt~pPP~ppl 311 (518)
T KOG1830|consen 232 STRPEYQSEQADGSYSSLPPNPKNQLASNMVAPSGMTMHHPPQPPVMPHASQGQRGGGLASARPSSNVVRPTQPPPPPPL 311 (518)
T ss_pred cCCccccccccccchhccCCCcccccccccCCCcCCCCCCCCCCCccccccccccCCcccCcCCCcCCCCCCCCCCCCCC
Confidence 3445666777776532222111333333232223333322 2222 2333333333333332223455667777666
Q ss_pred CCCCCCC--CCCCCCCCCC-CCCCCCCCC
Q 003934 425 PSLTSED--VPVVPPPPDE-EWIPPPPPD 450 (785)
Q Consensus 425 ~s~~ped--~~~pPPPPe~-E~iPPPPPd 450 (785)
.+.++.+ .+++-.||+. ..+|||||.
T Consensus 312 ~~~~g~~p~as~~s~p~~~~d~lppPpp~ 340 (518)
T KOG1830|consen 312 DSPPGPDPTASIPSTPPDPRDDLPPPPPP 340 (518)
T ss_pred CCCCCCCCcCCCCCCCCCCccCCCCCCCc
Confidence 6666666 5555222222 445555544
No 24
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=74.58 E-value=2.3 Score=53.35 Aligned_cols=18 Identities=44% Similarity=0.835 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 003934 438 PPDEEWIPPPPPDNEQVP 455 (785)
Q Consensus 438 PPe~E~iPPPPPd~ep~p 455 (785)
||.+.+.|||||--||+-
T Consensus 5 ppg~ppppppppg~epps 22 (2365)
T COG5178 5 PPGNPPPPPPPPGFEPPS 22 (2365)
T ss_pred CCCCCcccccCCCCCCCC
Confidence 466655556665544443
No 25
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=73.44 E-value=4.7 Score=40.01 Aligned_cols=47 Identities=21% Similarity=0.486 Sum_probs=32.3
Q ss_pred cccchhhHHHHHHHHHHhhhcccCCcc--cHHHHHHHHHhHHHHHHHHH
Q 003934 647 NKKVSSLVDKWKAAKEELNENEEDEPE--NAYEILERKRQREIEEWRAQ 693 (785)
Q Consensus 647 ~KK~sSLVdKW~a~qeEl~EeEEee~e--~~~E~ler~rqreIEeWr~q 693 (785)
+.....-|+.|++-++...+.++.+.. ..++.|++-|+|+|.++|++
T Consensus 6 ~tg~kgv~~d~~~~~~~~~~~~~~d~~~~~~e~~l~~~R~~R~~el~~~ 54 (175)
T cd02987 6 NTGPKGVINDWRKFKQLKESEQEDDDDDEDKEEFLQQYREQRMQEMHAK 54 (175)
T ss_pred CCCCchhHHHHHHHHhhhchhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 556668899999998763222222111 11358999999999999997
No 26
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.08 E-value=3.2 Score=50.33 Aligned_cols=62 Identities=26% Similarity=0.414 Sum_probs=36.5
Q ss_pred hcccccccccccccccccchhhHHHHHHHHHHhhhcccCCcc-cHHHHHHH------------HHhHHHHHHHHHH
Q 003934 632 RNKKRTVAVAPSLRSNKKVSSLVDKWKAAKEELNENEEDEPE-NAYEILER------------KRQREIEEWRAQQ 694 (785)
Q Consensus 632 R~~Kra~a~~ssL~s~KK~sSLVdKW~a~qeEl~EeEEee~e-~~~E~ler------------~rqreIEeWr~qQ 694 (785)
+|+|....-+-+ ...||+.-|.+..++-++|++.-|-+|.+ +.+|.+|+ +|||+||.-|+++
T Consensus 316 DKrkeNy~kGqa-ELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEe 390 (1118)
T KOG1029|consen 316 DKRKENYEKGQA-ELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEE 390 (1118)
T ss_pred hhhHHhHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566665544433 55677888888888877775443322222 23344433 4567787777664
No 27
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=68.66 E-value=5.9 Score=41.85 Aligned_cols=36 Identities=39% Similarity=0.580 Sum_probs=24.9
Q ss_pred HHhhhcccCCcccHHHHHHHHHhHHHHHHHHHHHHh
Q 003934 662 EELNENEEDEPENAYEILERKRQREIEEWRAQQIAS 697 (785)
Q Consensus 662 eEl~EeEEee~e~~~E~ler~rqreIEeWr~qQl~s 697 (785)
+||+|=|+++.....++||.=|+|++-|||..+...
T Consensus 53 eeLeelEDded~dDerfLE~YR~kRl~E~r~~~~k~ 88 (240)
T KOG3170|consen 53 EELEELEDDEDSDDERFLEMYRIKRLAEWRATAEKA 88 (240)
T ss_pred HHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444433322344599999999999999998765
No 28
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=63.95 E-value=5.6 Score=46.48 Aligned_cols=27 Identities=26% Similarity=0.818 Sum_probs=23.3
Q ss_pred ccccccCCCCceEEEeccccceeccCCC
Q 003934 757 WQAYWDESSKQIYYGNTITSKTTWTRPT 784 (785)
Q Consensus 757 Wqa~~D~~tg~vYY~N~~T~eTtW~RP~ 784 (785)
|-.-| .+-+||||||..|..+.|+||.
T Consensus 116 WcVVw-TgD~RvFFyNpktk~S~We~P~ 142 (617)
T KOG0155|consen 116 WCVVW-TGDNRVFFYNPKTKLSVWERPL 142 (617)
T ss_pred eEEEE-eCCCceEEeCCccccccccCch
Confidence 87666 4559999999999999999994
No 29
>PRK15313 autotransport protein MisL; Provisional
Probab=60.16 E-value=14 Score=45.96 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=10.8
Q ss_pred hcccccccccccccccccc
Q 003934 632 RNKKRTVAVAPSLRSNKKV 650 (785)
Q Consensus 632 R~~Kra~a~~ssL~s~KK~ 650 (785)
+-+-+..+.+.||+..+++
T Consensus 794 ~~~Y~s~G~taSLEaGY~f 812 (955)
T PRK15313 794 AEKYKSKGITASVEAGYSF 812 (955)
T ss_pred ccceeeeEEEEEEEcceee
Confidence 3334455566777776544
No 30
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=59.55 E-value=15 Score=43.31 Aligned_cols=7 Identities=71% Similarity=1.977 Sum_probs=3.5
Q ss_pred CCCCCCC
Q 003934 444 IPPPPPD 450 (785)
Q Consensus 444 iPPPPPd 450 (785)
||||||-
T Consensus 249 vPPPPP~ 255 (817)
T KOG1925|consen 249 VPPPPPK 255 (817)
T ss_pred CCCCCCC
Confidence 4555554
No 31
>PHA03247 large tegument protein UL36; Provisional
Probab=58.13 E-value=39 Score=46.26 Aligned_cols=17 Identities=12% Similarity=0.415 Sum_probs=11.9
Q ss_pred chhhHHHHHHHHHHhhh
Q 003934 650 VSSLVDKWKAAKEELNE 666 (785)
Q Consensus 650 ~sSLVdKW~a~qeEl~E 666 (785)
+.=||+--++|+++|+.
T Consensus 3111 lAlLi~ACr~i~r~lr~ 3127 (3151)
T PHA03247 3111 LAVLIEACRRIRRQLRR 3127 (3151)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44568888888777654
No 32
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=57.70 E-value=24 Score=41.39 Aligned_cols=32 Identities=19% Similarity=0.084 Sum_probs=21.8
Q ss_pred ccccccccccCCCceeeecCCcccccccccccCC
Q 003934 118 GAQANERFEGSKGEVMKYGNGTVGVSQVELSGTG 151 (785)
Q Consensus 118 ~~q~n~~~e~~~~d~~~~~n~~~~v~~~~~~~~~ 151 (785)
++|.||.|-.+-|- +|++=.+.|.|--.+|-+
T Consensus 22 t~~ene~lf~~lgk--~~~~l~aAVVqLY~a~p~ 53 (569)
T KOG3671|consen 22 TSEENETLFKLLGK--KCKTLAAAVVQLYKAYPD 53 (569)
T ss_pred chhHHHHHHHHhcc--chhhHHHHHHHHHhhcCC
Confidence 35678888777776 666666677776655553
No 33
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=56.97 E-value=4.9 Score=45.77 Aligned_cols=28 Identities=21% Similarity=0.642 Sum_probs=20.3
Q ss_pred cCcceEEEEccccccccccCcccccccc
Q 003934 32 ESKQYYYWNVETGETSWEIPQVLAQTTE 59 (785)
Q Consensus 32 ~s~~~yywn~~tgetswe~p~~l~~~~~ 59 (785)
.....|+||+.-|+++|+||...+..+.
T Consensus 381 ~~eKLYHyN~~GGtSTW~LP~~w~~~~~ 408 (425)
T PF12905_consen 381 DEEKLYHYNPDGGTSTWTLPDSWAGLSS 408 (425)
T ss_dssp GG-EEEEEESS-CEEEEE--HHHCT-SE
T ss_pred CcceeEEEcCCCCeeeeeCCccccCCce
Confidence 4678999999999999999999988553
No 34
>PHA03247 large tegument protein UL36; Provisional
Probab=52.35 E-value=28 Score=47.55 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=12.2
Q ss_pred cCCceEEEeccCcceEEEEcc
Q 003934 22 SSGWRMVLHEESKQYYYWNVE 42 (785)
Q Consensus 22 ~~~w~~~~~e~s~~~yywn~~ 42 (785)
..+||..---++.-.=-|+..
T Consensus 2170 ~aDWk~gklS~tdpLapW~~~ 2190 (3151)
T PHA03247 2170 LADWRHGKLSESDPLAPWRAA 2190 (3151)
T ss_pred HhhhccCCCCccccchhhhhC
Confidence 456766655556655566543
No 35
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=50.12 E-value=11 Score=44.07 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=29.1
Q ss_pred CCCCCccccccccCCCCceEEEeccccceeccCC
Q 003934 750 SKDLPSGWQAYWDESSKQIYYGNTITSKTTWTRP 783 (785)
Q Consensus 750 s~~LP~gWqa~~D~~tg~vYY~N~~T~eTtW~RP 783 (785)
+.+||.||-..+ -++|-.-|.|..||--||.||
T Consensus 152 ~epLPeGW~~i~-HnSGmPvylHr~tRVvt~SrP 184 (650)
T KOG4334|consen 152 SEPLPEGWTVIS-HNSGMPVYLHRFTRVVTHSRP 184 (650)
T ss_pred CCcCCCceEEEe-ecCCCceEEeeeeeeEeccCc
Confidence 458999998765 467999999999999999999
No 36
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=47.85 E-value=13 Score=38.32 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=12.3
Q ss_pred HHHHHHHHhHHHHHHHHHHH
Q 003934 676 YEILERKRQREIEEWRAQQI 695 (785)
Q Consensus 676 ~E~ler~rqreIEeWr~qQl 695 (785)
.+..|.||++.||.|..-|-
T Consensus 108 ~q~EEEKRrqkie~we~~q~ 127 (190)
T PF06936_consen 108 KQEEEEKRRQKIEMWESMQE 127 (190)
T ss_dssp HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555678888888876543
No 37
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=47.06 E-value=1.2e+02 Score=34.89 Aligned_cols=11 Identities=18% Similarity=-0.037 Sum_probs=6.7
Q ss_pred HHHHhhhchhH
Q 003934 250 QLQRLEGSVDE 260 (785)
Q Consensus 250 ~lK~LE~sv~~ 260 (785)
|.-.|+|.|..
T Consensus 45 ~~vVlnC~I~k 55 (409)
T KOG4590|consen 45 QQVVLNCLILK 55 (409)
T ss_pred ccccccccccc
Confidence 55566666664
No 38
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=45.77 E-value=17 Score=42.13 Aligned_cols=12 Identities=50% Similarity=1.115 Sum_probs=4.6
Q ss_pred CCCCCCCCCCCC
Q 003934 436 PPPPDEEWIPPP 447 (785)
Q Consensus 436 PPPPe~E~iPPP 447 (785)
||.|...+.|||
T Consensus 6 ~P~P~P~P~P~P 17 (465)
T PF01690_consen 6 PPSPGPSPTPPP 17 (465)
T ss_pred CCCCCCCCCCCC
Confidence 333433333333
No 39
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=45.12 E-value=39 Score=37.96 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=9.0
Q ss_pred CChhHHHHHHHHHHH
Q 003934 709 LGGDWREKVKRRRAQ 723 (785)
Q Consensus 709 L~~DWReRVkrkr~r 723 (785)
|..|+-.||..|-++
T Consensus 341 LRDDYVRRLl~kEaq 355 (407)
T PF04625_consen 341 LRDDYVRRLLHKEAQ 355 (407)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666776676644443
No 40
>KOG3209 consensus WW domain-containing protein [General function prediction only]
Probab=44.67 E-value=13 Score=45.19 Aligned_cols=31 Identities=29% Similarity=0.754 Sum_probs=29.0
Q ss_pred CCCccccccccCCCCceEEEeccccceeccCC
Q 003934 752 DLPSGWQAYWDESSKQIYYGNTITSKTTWTRP 783 (785)
Q Consensus 752 ~LP~gWqa~~D~~tg~vYY~N~~T~eTtW~RP 783 (785)
+||.+|+..|-++ |.+||..+-|+.|+|=.|
T Consensus 222 plp~nwemayte~-gevyfiDhntkttswLdp 252 (984)
T KOG3209|consen 222 PLPHNWEMAYTEQ-GEVYFIDHNTKTTSWLDP 252 (984)
T ss_pred CCCccceEeEeec-CeeEeeecccccceecCh
Confidence 5999999999877 999999999999999876
No 41
>cd00122 MBD MeCP2, MBD1, MBD2, MBD3, MBD4, CLLD8-like, and BAZ2A-like proteins constitute a family of proteins that share the methyl-CpG-binding domain (MBD). The MBD consists of about 70 residues and is defined as the minimal region required for binding to methylated DNA by a methyl-CpG-binding protein which binds specifically to methylated DNA. The MBD can recognize a single symmetrically methylated CpG either as naked DNA or within chromatin. MeCP2, MBD1 and MBD2 (and likely MBD3) form complexes with histone deacetylase and are involved in histone deacetylase-dependent repression of transcription. MBD4 is an endonuclease that forms a complex with the DNA mismatch-repair protein MLH1. The MBDs present in putative chromatin remodelling subunit, BAZ2A, and putative histone methyltransferase, CLLD8, represent two phylogenetically distinct groups within the MBD protein family.
Probab=42.94 E-value=19 Score=30.37 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=21.3
Q ss_pred ccCCCCCcccccccc------CCCCceEEEeccc
Q 003934 748 DLSKDLPSGWQAYWD------ESSKQIYYGNTIT 775 (785)
Q Consensus 748 ~ls~~LP~gWqa~~D------~~tg~vYY~N~~T 775 (785)
+|..+||.||+...- ...+.|||+....
T Consensus 1 ~l~~P~p~GW~R~~~~r~~g~~~k~dv~Y~sP~G 34 (62)
T cd00122 1 PLRDPLPPGWKRELVIRKSGSAGKGDVYYYSPCG 34 (62)
T ss_pred CCCCCCCCCeEEEEEEcCCCCCCcceEEEECCCC
Confidence 356789999988776 3567899998764
No 42
>KOG0155 consensus Transcription factor CA150 [Transcription]
Probab=40.92 E-value=22 Score=41.86 Aligned_cols=34 Identities=24% Similarity=0.556 Sum_probs=30.3
Q ss_pred cCCceEEEeccCcceEEEEccccccccccCccccc
Q 003934 22 SSGWRMVLHEESKQYYYWNVETGETSWEIPQVLAQ 56 (785)
Q Consensus 22 ~~~w~~~~~e~s~~~yywn~~tgetswe~p~~l~~ 56 (785)
++.|-+||- +-|++||.|.-|-.-+||+|.-|-.
T Consensus 113 gtdWcVVwT-gD~RvFFyNpktk~S~We~P~dlk~ 146 (617)
T KOG0155|consen 113 GTDWCVVWT-GDNRVFFYNPKTKLSVWERPLDLKG 146 (617)
T ss_pred CCCeEEEEe-CCCceEEeCCccccccccCchhhcc
Confidence 566999996 6789999999999999999998877
No 43
>KOG0150 consensus Spliceosomal protein FBP21 [RNA processing and modification]
Probab=40.71 E-value=13 Score=41.29 Aligned_cols=25 Identities=36% Similarity=0.600 Sum_probs=21.1
Q ss_pred cCcceEEEEccccccccccCccccc
Q 003934 32 ESKQYYYWNVETGETSWEIPQVLAQ 56 (785)
Q Consensus 32 ~s~~~yywn~~tgetswe~p~~l~~ 56 (785)
.++.-||||+.|||+-|..|.-+..
T Consensus 159 es~~~yy~n~~t~esvwk~P~~~~t 183 (336)
T KOG0150|consen 159 ESGPTYYSNKRTNESVWKPPRISFT 183 (336)
T ss_pred CCCCCcceecCCCccccCCCCcccc
Confidence 4667799999999999999985554
No 44
>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.
Probab=40.48 E-value=20 Score=37.32 Aligned_cols=44 Identities=16% Similarity=0.478 Sum_probs=30.9
Q ss_pred hhhHHHHHHHHHHhhhcccCCcccHHHHHHHHHhHHHHHHHHHH
Q 003934 651 SSLVDKWKAAKEELNENEEDEPENAYEILERKRQREIEEWRAQQ 694 (785)
Q Consensus 651 sSLVdKW~a~qeEl~EeEEee~e~~~E~ler~rqreIEeWr~qQ 694 (785)
+.-|.+|+.-++..-++.++.+++..+.+..+.++.|++|-.+.
T Consensus 111 ~e~ireWre~~~~~i~ekD~~e~~kk~e~~~~A~k~lddfY~~~ 154 (225)
T PF01086_consen 111 PEAIREWREERDKRIEEKDAEEEEKKEEIKEKAKKELDDFYENR 154 (225)
T ss_dssp TTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688999887765555444444456777788889999996553
No 45
>KOG3427 consensus Polyglutamine tract-binding protein PQBP-1 [Transcription]
Probab=40.26 E-value=6.5 Score=41.29 Aligned_cols=32 Identities=25% Similarity=0.580 Sum_probs=29.3
Q ss_pred CceEEEeccCcceEEEEccccccccccCcccc
Q 003934 24 GWRMVLHEESKQYYYWNVETGETSWEIPQVLA 55 (785)
Q Consensus 24 ~w~~~~~e~s~~~yywn~~tgetswe~p~~l~ 55 (785)
.|-.|.++.-+.+||||..|-+++|.-|.+--
T Consensus 11 ~w~kv~~~s~~~~y~wn~~td~v~w~sp~~P~ 42 (222)
T KOG3427|consen 11 LWTKVFDASPGSEYIWNIITDNVDWDSPSGPY 42 (222)
T ss_pred hhHhhcccccchhhhhhcccccccccCCCCCc
Confidence 79999999999999999999999999987643
No 46
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=39.66 E-value=65 Score=39.65 Aligned_cols=14 Identities=50% Similarity=1.089 Sum_probs=5.4
Q ss_pred CCCCCCCCCCCCCC
Q 003934 436 PPPPDEEWIPPPPP 449 (785)
Q Consensus 436 PPPPe~E~iPPPPP 449 (785)
||||..-.+|||||
T Consensus 298 p~p~~~~~~pPppp 311 (830)
T KOG1923|consen 298 PSPLRLRCSPPPPP 311 (830)
T ss_pred CCCCCCCCCCCCCC
Confidence 33333333444433
No 47
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=39.59 E-value=37 Score=40.00 Aligned_cols=12 Identities=17% Similarity=-0.072 Sum_probs=5.2
Q ss_pred CCCcccCCCCcc
Q 003934 339 GGGNVASSESPA 350 (785)
Q Consensus 339 ~~~~~~~~~~~~ 350 (785)
|+.|||-.....
T Consensus 244 h~~hVgwd~~~g 255 (569)
T KOG3671|consen 244 HIPHVGWDEQVG 255 (569)
T ss_pred cccccCCCcCCC
Confidence 444444444333
No 48
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=32.22 E-value=80 Score=38.25 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=10.1
Q ss_pred ccchhhHHHHHHHHHHhh
Q 003934 648 KKVSSLVDKWKAAKEELN 665 (785)
Q Consensus 648 KK~sSLVdKW~a~qeEl~ 665 (785)
..++.+.++-.++.+++.
T Consensus 688 ~~~~~l~~~~~~~~~~l~ 705 (833)
T KOG1922|consen 688 EECSDLKKGLEKVKRELP 705 (833)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 445555555566666663
No 49
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=31.33 E-value=52 Score=33.40 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.4
Q ss_pred HHHHHHHhHHHHHHHHHHH
Q 003934 677 EILERKRQREIEEWRAQQI 695 (785)
Q Consensus 677 E~ler~rqreIEeWr~qQl 695 (785)
+.|++-|+|+|.++|+.+-
T Consensus 59 ~~Le~yR~kRl~el~~~~~ 77 (192)
T cd02988 59 RFLEEYRRKRLAEMKALAE 77 (192)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 5899999999999998754
No 50
>smart00391 MBD Methyl-CpG binding domain. Methyl-CpG binding domain, also known as the TAM (TTF-IIP5, ARBP, MeCP1) domain
Probab=31.19 E-value=34 Score=30.46 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=20.4
Q ss_pred ccCCCCCcccccccc-------CCCCceEEEecc
Q 003934 748 DLSKDLPSGWQAYWD-------ESSKQIYYGNTI 774 (785)
Q Consensus 748 ~ls~~LP~gWqa~~D-------~~tg~vYY~N~~ 774 (785)
++..+||.||+...- ...+.|||+...
T Consensus 3 ~~~~Plp~GW~R~~~~r~~g~~~~~~dV~Y~sP~ 36 (77)
T smart00391 3 PLRLPLPCGWRRETKQRKSGRSAGKFDVYYISPC 36 (77)
T ss_pred cccCCCCCCcEEEEEEecCCCCCCcccEEEECCC
Confidence 466789999987775 246899999763
No 51
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=31.12 E-value=9.9 Score=39.69 Aligned_cols=64 Identities=19% Similarity=0.330 Sum_probs=44.4
Q ss_pred cccccccccccccceeEEEEEEecccchhhccCCCCchhhhhhHHHHHHhhhchhHHHHHHhhhcccccccccc
Q 003934 205 GSKAHLQHHDWTSKYVLEVEIRLSDFKSLLACGSSILPFWLHSERQLQRLEGSVDEEIYQIAKSQVDEDMATHI 278 (785)
Q Consensus 205 ~~~~~~~~~~~~sky~lEieIR~SD~~sL~sygSSLLPfW~Hser~lK~LE~sv~~~~yq~~~~~~~~~~~~~~ 278 (785)
-...-..++-|..+++||.++|= |-|+|||.|.-=-|--+=.++.+..-..-.-.++++..+|.
T Consensus 79 m~d~E~~HL~~f~~~l~e~~vRP----------sll~P~W~~~~FalGA~a~Llgdk~am~~teavE~vIe~Hy 142 (204)
T COG2941 79 MADEEIDHLAWFEQRLLELGVRP----------SLLNPLWYAAAFALGAGAGLLGDKAAMGFTEAVETVIEKHY 142 (204)
T ss_pred HHHHHHHHHHHHHHHHHHccCCc----------cHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHH
Confidence 33445678889999999999994 57899999998888888777775332222233455555553
No 52
>PF15232 DUF4585: Domain of unknown function (DUF4585)
Probab=29.31 E-value=38 Score=30.84 Aligned_cols=17 Identities=29% Similarity=0.479 Sum_probs=14.4
Q ss_pred ceEEEeccCcceEEEEc
Q 003934 25 WRMVLHEESKQYYYWNV 41 (785)
Q Consensus 25 w~~~~~e~s~~~yywn~ 41 (785)
=|+.+|.+||||||-.+
T Consensus 8 rKvL~DP~SG~Yy~vd~ 24 (75)
T PF15232_consen 8 RKVLQDPESGQYYVVDA 24 (75)
T ss_pred ccEeecCCCCCEEEEec
Confidence 48999999999999653
No 53
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.41 E-value=2.8e+02 Score=31.11 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=7.0
Q ss_pred CCCCCCCCCCCCCCCC
Q 003934 435 VPPPPDEEWIPPPPPD 450 (785)
Q Consensus 435 pPPPPe~E~iPPPPPd 450 (785)
||=+|.---+|+|=+-
T Consensus 241 pP~~pa~~nnP~p~yS 256 (338)
T KOG0917|consen 241 PPGAPAPANNPAPVYS 256 (338)
T ss_pred CCCCccccCCCCCCCC
Confidence 3444444444444433
No 54
>PHA03211 serine/threonine kinase US3; Provisional
Probab=27.80 E-value=70 Score=36.21 Aligned_cols=11 Identities=36% Similarity=0.679 Sum_probs=5.1
Q ss_pred CCCCCCCCCCC
Q 003934 428 TSEDVPVVPPP 438 (785)
Q Consensus 428 ~ped~~~pPPP 438 (785)
|+++.-.||||
T Consensus 41 ~~~~~~~~~~~ 51 (461)
T PHA03211 41 PPRGVCFPPPP 51 (461)
T ss_pred CccccccCCCC
Confidence 44555554333
No 55
>PF12526 DUF3729: Protein of unknown function (DUF3729) ; InterPro: IPR022202 This domain of unknown function is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with PF01443 from PFAM, PF01661 from PFAM, PF05417 from PFAM, PF01660 from PFAM, PF00978 from PFAM. There is a single completely conserved residue L that may be functionally important.
Probab=26.59 E-value=2.4e+02 Score=27.39 Aligned_cols=29 Identities=31% Similarity=0.617 Sum_probs=16.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC--CCCCCCC
Q 003934 430 EDVPVVPPPPDEEWIPPPPPDN--EQVPPPP 458 (785)
Q Consensus 430 ed~~~pPPPPe~E~iPPPPPd~--ep~pPpp 458 (785)
-+.|..|||+|.-.+.+.+.+. +++.|+.
T Consensus 56 ~~~~~~pp~~e~~~~~~~~~~p~~~Pa~Pps 86 (113)
T PF12526_consen 56 SDIWVLPPPSEPAAPDPDPVPPVPKPANPPS 86 (113)
T ss_pred cccccCCCCCccccccccccCCcCCcCCCCC
Confidence 5667667777666555555543 4444433
No 56
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=24.07 E-value=2e+02 Score=33.60 Aligned_cols=44 Identities=27% Similarity=0.462 Sum_probs=26.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccccccCCCCccccccccCCCC
Q 003934 451 NEQVPPPPPDEPPEDSYNPTTSYVENVQHHPYMEQYNIPYPDSS 494 (785)
Q Consensus 451 ~ep~pPppP~ep~~~SY~~~~sy~n~~yp~py~eqYnl~yt~~n 494 (785)
+-|.+-||...+-.+.|.+-.+|...+++.||++|-.-.-|.+.
T Consensus 413 ~~pl~~Pp~~~~~~p~~~~q~~Y~~~~qs~p~~~Q~~q~~pa~~ 456 (462)
T KOG2199|consen 413 QQPLQQPPNSNPATPQQQPQLSYSVTPQSVPYPEQNQQQPPAPT 456 (462)
T ss_pred cCCCCCCCccCCCCCCCCccccccCCCCCCCchhhccCCCCCCC
Confidence 45555555445544556555677777777788777665444443
No 57
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=22.86 E-value=29 Score=42.54 Aligned_cols=32 Identities=28% Similarity=0.536 Sum_probs=27.3
Q ss_pred CCCccccccccCCCCceEEEeccccceeccCCC
Q 003934 752 DLPSGWQAYWDESSKQIYYGNTITSKTTWTRPT 784 (785)
Q Consensus 752 ~LP~gWqa~~D~~tg~vYY~N~~T~eTtW~RP~ 784 (785)
+.---||....+| +-.||.|++|..|.||.|.
T Consensus 349 svq~pw~rais~n-kvpyyinh~~q~t~wdhp~ 380 (966)
T KOG4286|consen 349 SVQGPWERAISPN-KVPYYINHETQTTCWDHPK 380 (966)
T ss_pred cCcccchhccCcc-ccchhhcccchhhhccchH
Confidence 3333499999995 9999999999999999984
No 58
>PF01429 MBD: Methyl-CpG binding domain; InterPro: IPR001739 Methylation at CpG dinucleotide, the most common DNA modification in eukaryotes, has been correlated with gene silencing associated with various phenomena such as genomic imprinting, transposon and chromosome X inactivation, differentiation, and cancer. Effects of DNA methylation are mediated through proteins which bind to symmetrically methylated CpGs. Such proteins contain a specific domain of ~70 residues, the methyl-CpG-binding domain (MBD), which is linked to additional domains associated with chromatin, such as the bromodomain, the AT hook motif,the SET domain, or the PHD finger. MBD-containing proteins appear to act as structural proteins, which recruit a variety of histone deacetylase (HDAC) complexes and chromatin remodelling factors, leading to chromatin compaction and, consequently, to transcriptional repression. The MBD of MeCP2, MBD1, MBD2, MBD4 and BAZ2 mediates binding to DNA, in case of MeCP2, MBD1 and MBD2 preferentially to methylated CpG. In case of human MBD3 and SETDB1 the MBD has been shown to mediate protein-protein interactions [, ]. The MBD folds into an alpha/beta sandwich structure comprising a layer of twisted beta sheet, backed by another layer formed by the alpha1 helix and a hairpin loop at the C terminus. These layers are both amphipathic, with the alpha1 helix and the beta sheet lying parallel and the hydrophobic faces tightly packed against each other. The beta sheet is composed of two long inner strands (beta2 and beta3) sandwiched by two shorter outer strands (beta1 and beta4) [].; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 2KY8_A 1UB1_A 1D9N_A 1IG4_A 1QK9_A 3C2I_A.
Probab=21.76 E-value=67 Score=28.23 Aligned_cols=26 Identities=31% Similarity=0.626 Sum_probs=17.6
Q ss_pred ccCCCCCcccccccc-C------CCCceEEEec
Q 003934 748 DLSKDLPSGWQAYWD-E------SSKQIYYGNT 773 (785)
Q Consensus 748 ~ls~~LP~gWqa~~D-~------~tg~vYY~N~ 773 (785)
++..+||.||+...= . ....+||+..
T Consensus 6 ~~~~~Lp~GW~re~~~R~~g~~~~~~dv~Y~sP 38 (77)
T PF01429_consen 6 PLDPPLPDGWKREVVVRKSGSSAGKKDVYYYSP 38 (77)
T ss_dssp CEBTTSTTT-EEEEEESSSSTTTTSEEEEEEET
T ss_pred cccCCCCCCCEEEEEEecCCCcCCceEEEEECC
Confidence 456689999985543 1 2467899987
No 59
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.42 E-value=1.9e+02 Score=34.05 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 003934 410 ATLEQPVQPNPPADHPSLTSEDVPVVPPPPDEEWIPPPPPDNEQVPPPPPDEPPEDSYNPTT 471 (785)
Q Consensus 410 ~p~eq~~~P~pp~~~~s~~ped~~~pPPPPe~E~iPPPPPd~ep~pPppP~ep~~~SY~~~~ 471 (785)
+.......|+.++.....+| ..|+|.|..-+.|+|||..+|.++-+.+-+.+..|.++.
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (585)
T PRK14950 390 KAAAAANIPPKEPVRETATP---PPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPA 448 (585)
T ss_pred cccccccCCcccccccCCCC---CCCCCCCCCCCCCCCCCCCCCcccccccCCcCCCCCCCC
No 60
>KOG0940 consensus Ubiquitin protein ligase RSP5/NEDD4 [Posttranslational modification, protein turnover, chaperones]
Probab=20.14 E-value=65 Score=36.24 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=29.2
Q ss_pred CCCccccccccCCCC--ceEEEecccc-ceeccCCC
Q 003934 752 DLPSGWQAYWDESSK--QIYYGNTITS-KTTWTRPT 784 (785)
Q Consensus 752 ~LP~gWqa~~D~~tg--~vYY~N~~T~-eTtW~RP~ 784 (785)
+||.+|.-......+ .+||.++.+. .|+|.+|.
T Consensus 60 glprewf~~lS~e~~~p~~~~~~~~~~~~tlq~~P~ 95 (358)
T KOG0940|consen 60 GLPREWFFLLSHEGFNPWYGLFQHSRKDYTLWLNPR 95 (358)
T ss_pred CCCcceeeeeccccCCcceeeeeecccccccccCCc
Confidence 699999999988866 8999999999 59999995
Done!