BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003936
(785 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 74/171 (43%), Gaps = 18/171 (10%)
Query: 274 SLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQA---------LNRLIIDGTAIRELPE 324
+LP+ L L I CP LP+ L + A L L ++ T IR LP
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPA 200
Query: 325 GLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIE 384
+ L L L+++N S L + +I L +E +++ C+ L+ +P I G
Sbjct: 201 SIANLQNLKSLKIRN-SPLSALGPAIHHLPKLEELDLRGCTALRNYPPI----FGG---- 251
Query: 385 RIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEA 435
R P L L CS L +LP + L L++ C L RLP + L A
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 32/247 (12%)
Query: 286 TSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEY 345
+LE+ P + PD+ L L ID + ELP+ Q A L L L + L
Sbjct: 84 VALELRSVP-LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRA 141
Query: 346 ISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLN-KCSKLESLPS 404
+ +SI L + + I C L PE P + D SG + ++ L + + + SLP+
Sbjct: 142 LPASIASLNRLRELSIRACPELTELPE-PLASTDASGEHQGLVNLQSLRLEWTGIRSLPA 200
Query: 405 SLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEG-TGIREVPXXXXXXXXXXXXX 463
S+ ++L SL+I + L L + +L LEEL + G T +R P
Sbjct: 201 SIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPP------------ 247
Query: 464 XXXXXXXXXPSRLYVSKS-LTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKG-TAIREVPE 521
++ ++ L L + DC N + LP +I L L+ L ++G + +P
Sbjct: 248 ------------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295
Query: 522 SLGQLSS 528
+ QL +
Sbjct: 296 LIAQLPA 302
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 85/186 (45%), Gaps = 4/186 (2%)
Query: 190 GVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSC 249
G+ ELP + + + + E L + L + +SI L L + I CP L L P
Sbjct: 113 AAGLXELPDTXQQFAGL-ETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLA 171
Query: 250 NIDGTRSKEQPSSELKLK-KCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQA 308
+ D + + + L+ + SLP+ ++L SL+I + P L + +L
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPK 230
Query: 309 LNRLIIDG-TAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNL 367
L L + G TA+R P G A L +L LK+CS L + I +L +E +++ C NL
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290
Query: 368 KGFPEI 373
P +
Sbjct: 291 SRLPSL 296
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 57/115 (49%), Gaps = 1/115 (0%)
Query: 66 NLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLT 125
NL SL++ + + L + NL +LK + ++ S L P + LE LDL C++L
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALR 243
Query: 126 ETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHS-KYLKRLVLRGCSNLKNLPKMTS 179
L+ L L C +L +LP IH L++L LRGC NL LP + +
Sbjct: 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 82/199 (41%), Gaps = 20/199 (10%)
Query: 121 CSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHS-KYLKRLVLRGCSNLKNLPKMTS 179
+ L E + Q LE L L R L +LP SI S L+ L +R C L LP+ +
Sbjct: 113 AAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEPLA 171
Query: 180 CHLRS----------TLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQF 229
S +L L GI LP+SI L N+ L I + L + +I L
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPK 230
Query: 230 LESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLE 289
LE + + C L+ P I G R+ P L LK C +LP L L+
Sbjct: 231 LEELDLRGCTALR--NYPP--IFGGRA---PLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283
Query: 290 IIDCPNFERLPDELGNLQA 308
+ C N RLP + L A
Sbjct: 284 LRGCVNLSRLPSLIAQLPA 302
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 58/220 (26%), Positives = 95/220 (43%), Gaps = 46/220 (20%)
Query: 335 LELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLN 394
LEL++ L F+L ++ I + G E+P +G+E L L
Sbjct: 86 LELRSVP-LPQFPDQAFRLSHLQHXTI----DAAGLXELPDTXQQFAGLE-----TLTLA 135
Query: 395 KCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEA---------LEELRVEGTG 445
+ + L +LP+S+ L L I C +L LP+ L + +A L+ LR+E TG
Sbjct: 136 R-NPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194
Query: 446 IREVPXXXXXXXXXXXXXXXXXXXXXXPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEY 505
IR + P+ + ++L SL+I + L I +L
Sbjct: 195 IRSL-----------------------PASIANLQNLKSLKIRNSP-LSALGPAIHHLPK 230
Query: 506 LKVLTIKG-TAIREVPESLGQLSSLEWLVLSD-NNLQIIP 543
L+ L ++G TA+R P G + L+ L+L D +NL +P
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 1/108 (0%)
Query: 49 FEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLS 108
EW +I + +NL SLK+ S ++ L + +L L+ +DL+ L P +
Sbjct: 190 LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIF 249
Query: 109 LAQN-LEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI 155
+ L+ L L CS+L I L +LE LDL C +L+ LP+ I
Sbjct: 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 25/110 (22%)
Query: 496 LPDEIGNLEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQIIPEXXXXXXXXXX 554
+P EIG++ YL +L + I +P+ +G L L L LS N L
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD-------------- 690
Query: 555 XXXXXXXXERIPERLDPLSSLKYLDLFENNLDR-IPEYLRSFPTSIPSEF 603
RIP+ + L+ L +DL NNL IPE + F T P++F
Sbjct: 691 --------GRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKF 731
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 299 LPDELGNLQALNRLIIDGTAI-RELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVE 357
+PDE+G+L+ LN L + + +P+ + L +L++++L N +S I ++ E
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN----NNLSGPIPEMGQFE 724
Query: 358 SI---EISNCSNLKGFPEIPFC---NIDG 380
+ + N L G+P +P C N DG
Sbjct: 725 TFPPAKFLNNPGLCGYP-LPRCDPSNADG 752
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 49/110 (44%), Gaps = 25/110 (22%)
Query: 496 LPDEIGNLEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQIIPEXXXXXXXXXX 554
+P EIG++ YL +L + I +P+ +G L L L LS N L
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD-------------- 693
Query: 555 XXXXXXXXERIPERLDPLSSLKYLDLFENNLDR-IPEYLRSFPTSIPSEF 603
RIP+ + L+ L +DL NNL IPE + F T P++F
Sbjct: 694 --------GRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKF 734
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 12/89 (13%)
Query: 299 LPDELGNLQALNRLIIDGTAI-RELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVE 357
+PDE+G+L+ LN L + + +P+ + L +L++++L N +S I ++ E
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN----NNLSGPIPEMGQFE 727
Query: 358 SI---EISNCSNLKGFPEIPFC---NIDG 380
+ + N L G+P +P C N DG
Sbjct: 728 TFPPAKFLNNPGLCGYP-LPRCDPSNADG 755
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 47/165 (28%)
Query: 39 EGVPFTELRYFEWHQFPLKTLNILHW------------ENLVSLKMPGSKVTQLWDDVQN 86
EG+P TE R + + +KTLN + EN+VS PG+ N
Sbjct: 28 EGIP-TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA--------FNN 78
Query: 87 LVSLKRIDLKYSKL----------LTKLPDLSLAQN---------------LEILDLGYC 121
L +L+ + L+ ++L L+ L L +++N L+ L++G
Sbjct: 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN 138
Query: 122 SSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLR 166
+ +H + LN LE L L++C +LTS+PT S +VLR
Sbjct: 139 DLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLR 182
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 33.1 bits (74), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 11/133 (8%)
Query: 83 DVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVL-- 140
++QN LK ID+ + L KLPDL +LE + G ++ E +Q L L +
Sbjct: 148 ELQNSSFLKIIDVDNNSL-KKLPDL--PPSLEFIAAG--NNQLEELPELQNLPFLTAIYA 202
Query: 141 DLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCH----LRSTLPLLGVGIEEL 196
D + K L LP S+ S +L L+NLP +T+ + L TLP L +E L
Sbjct: 203 DNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEAL 262
Query: 197 PSSIKCLSNIGEL 209
L+++ EL
Sbjct: 263 NVRDNYLTDLPEL 275
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 481 SLTSLEIIDCKNFMRL----PDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLS 535
LT LE +D + +L P L +L L + ++E+ P L++L++L L
Sbjct: 77 GLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 136
Query: 536 DNNLQIIPE 544
DNNLQ +P+
Sbjct: 137 DNNLQALPD 145
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 51 WHQFPLKTL-------NILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTK 103
WH L L NI ++ L L + G+ +T+L +++NL +L+ +DL +++ LT
Sbjct: 226 WHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTS 284
Query: 104 LP 105
LP
Sbjct: 285 LP 286
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 19/90 (21%)
Query: 82 DDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGY--------------CSSLTET 127
DD++N + + + D KY L DLS NL+I ++ +SLTE
Sbjct: 207 DDIENRMVMPK-DSKYDDQLWHALDLS---NLQIFNISANIFKYDFLTRLYLNGNSLTEL 262
Query: 128 HSSIQYLNKLEVLDLDRCKSLTSLPTSIHS 157
+ I+ L+ L VLDL + LTSLP + S
Sbjct: 263 PAEIKNLSNLRVLDLSHNR-LTSLPAELGS 291
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 488 IDCKNFMRLPDEIGN-LEYLKVLTIKGTAIREVPESL-GQLSSLEWLVLSDNNLQIIPEX 545
++ + LP+ + + L L L + G ++ +P + +L+SL +L LS N LQ +P
Sbjct: 35 LETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94
Query: 546 X-XXXXXXXXXXXXXXXXERIPERL-DPLSSLKYLDLFENNLDRIPE 590
+ +P+ + D L+ LK L L++N L +P+
Sbjct: 95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD 141
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 282 FKSLTSLEIIDCPNFERLPD---ELGNLQALNRLIIDGTAIRELPEGLGQLA 330
K LT +E+ +CPN +LPD +L LQ+LN G + +L +LA
Sbjct: 490 LKDLTDVELYNCPNXTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA 541
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 12/129 (9%)
Query: 324 EGLGQLALLSKL--ELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGS 381
E G L L L ++ EL I+ ++KS++ ++IS N + E
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS--QNSVSYDE-------KK 392
Query: 382 GIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRV 441
G S+L LN S + + C+ + L++ K++ +P ++ LEAL+EL V
Sbjct: 393 GDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDL-HSNKIKSIPKQVVKLEALQELNV 451
Query: 442 EGTGIREVP 450
++ VP
Sbjct: 452 ASNQLKSVP 460
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 499 EIGNLEYLKVLTIKGTAIREVPESL-GQLSSLEWLVLSDNNLQIIPEXX-XXXXXXXXXX 556
E+ NL YL +LT G ++ +P + +L++L+ LVL +N LQ +P+
Sbjct: 83 ELTNLTYL-ILT--GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLY 139
Query: 557 XXXXXXERIPERL-DPLSSLKYLDLFENNLDRIPE 590
+ +P+ + D L++L LDL N L +PE
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPE 174
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 480 KSLTSLE--IIDCKNFMRLPDEI-GNLEYLKVLTIKGTAIREVPESL-GQLSSLEWLVLS 535
K LT+L I+ LP+ + L LK L + ++ +P+ + +L++L +L L+
Sbjct: 82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141
Query: 536 DNNLQIIPEXX-XXXXXXXXXXXXXXXXERIPERL-DPLSSLKYLDLFENNLDRIPE 590
N LQ +P+ + +PE + D L+ LK L L++N L +P+
Sbjct: 142 HNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 37/77 (48%)
Query: 276 PSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKL 335
P +K L +++ + E PD L++LN L++ G I ELP+ L + +L
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 336 ELKNCSELEYISSSIFK 352
L N +++ + F+
Sbjct: 109 LLLNANKINXLRVDAFQ 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,000,611
Number of Sequences: 62578
Number of extensions: 810724
Number of successful extensions: 1967
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1855
Number of HSP's gapped (non-prelim): 140
length of query: 785
length of database: 14,973,337
effective HSP length: 107
effective length of query: 678
effective length of database: 8,277,491
effective search space: 5612138898
effective search space used: 5612138898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)