Query 003936
Match_columns 785
No_of_seqs 721 out of 4414
Neff 9.8
Searched_HMMs 46136
Date Thu Mar 28 14:37:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003936.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003936hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.3E-46 2.8E-51 456.6 38.3 174 1-175 541-721 (1153)
2 PLN00113 leucine-rich repeat r 100.0 1.1E-47 2.4E-52 467.1 27.5 502 44-591 69-590 (968)
3 PLN00113 leucine-rich repeat r 100.0 1.7E-47 3.8E-52 465.4 26.5 505 13-584 87-605 (968)
4 KOG0472 Leucine-rich repeat pr 100.0 1.1E-38 2.4E-43 314.1 -7.0 484 44-590 45-544 (565)
5 KOG0472 Leucine-rich repeat pr 100.0 2.6E-36 5.6E-41 297.5 -11.1 469 65-593 45-525 (565)
6 KOG4194 Membrane glycoprotein 100.0 4.3E-33 9.4E-38 286.7 5.8 380 44-558 52-447 (873)
7 KOG0618 Serine/threonine phosp 100.0 4.7E-34 1E-38 309.3 -2.1 466 35-584 11-487 (1081)
8 KOG0444 Cytoskeletal regulator 100.0 9.8E-33 2.1E-37 285.5 -3.6 109 46-155 9-122 (1255)
9 KOG4194 Membrane glycoprotein 100.0 1.8E-30 3.9E-35 267.5 8.4 392 22-546 55-464 (873)
10 KOG0618 Serine/threonine phosp 100.0 2.7E-32 5.9E-37 295.7 -5.3 470 49-612 3-487 (1081)
11 KOG0444 Cytoskeletal regulator 100.0 3.3E-31 7.2E-36 274.2 -1.9 356 19-560 7-372 (1255)
12 PLN03210 Resistant to P. syrin 99.9 1.6E-23 3.4E-28 255.3 25.5 317 9-370 579-909 (1153)
13 PRK15387 E3 ubiquitin-protein 99.8 7E-19 1.5E-23 198.9 14.4 96 481-586 363-458 (788)
14 KOG4237 Extracellular matrix p 99.8 1.1E-19 2.4E-24 180.3 2.8 284 48-365 50-357 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 1.5E-17 3.2E-22 188.2 17.3 111 45-168 202-312 (788)
16 PRK15370 E3 ubiquitin-protein 99.7 5.2E-18 1.1E-22 193.3 11.5 246 284-586 179-428 (754)
17 KOG4237 Extracellular matrix p 99.7 6.3E-19 1.4E-23 175.0 -0.8 413 69-583 50-498 (498)
18 PRK15370 E3 ubiquitin-protein 99.7 1E-17 2.3E-22 190.8 8.1 231 307-593 178-408 (754)
19 KOG0617 Ras suppressor protein 99.7 2.1E-18 4.6E-23 151.7 -4.5 161 406-591 29-191 (264)
20 KOG0617 Ras suppressor protein 99.6 5.4E-17 1.2E-21 142.9 -5.8 151 398-572 44-195 (264)
21 cd00116 LRR_RI Leucine-rich re 99.5 7.9E-16 1.7E-20 163.4 -3.6 84 281-364 21-118 (319)
22 cd00116 LRR_RI Leucine-rich re 99.5 2.8E-15 6.1E-20 159.1 -1.5 239 300-588 16-293 (319)
23 KOG1259 Nischarin, modulator o 99.2 3.9E-12 8.5E-17 122.4 2.4 136 430-591 280-417 (490)
24 KOG0532 Leucine-rich repeat (L 99.2 1.2E-12 2.6E-17 136.7 -2.3 166 400-592 88-253 (722)
25 KOG4658 Apoptotic ATPase [Sign 99.2 3.5E-11 7.6E-16 140.0 8.5 319 37-378 516-853 (889)
26 KOG4658 Apoptotic ATPase [Sign 99.2 7.3E-11 1.6E-15 137.4 9.5 140 52-215 509-653 (889)
27 KOG0532 Leucine-rich repeat (L 99.1 1.4E-11 3.1E-16 128.8 -1.0 192 309-584 77-271 (722)
28 KOG3207 Beta-tubulin folding c 99.0 3.4E-11 7.3E-16 122.4 -0.9 110 304-444 118-232 (505)
29 COG4886 Leucine-rich repeat (L 99.0 4.6E-10 1E-14 122.7 7.9 153 411-589 141-293 (394)
30 PF14580 LRR_9: Leucine-rich r 99.0 1.7E-10 3.7E-15 107.6 3.3 103 44-147 19-125 (175)
31 COG4886 Leucine-rich repeat (L 99.0 3.2E-10 6.8E-15 124.0 5.1 142 404-571 157-298 (394)
32 PF14580 LRR_9: Leucine-rich r 99.0 4E-10 8.6E-15 105.1 4.6 126 15-144 15-149 (175)
33 KOG3207 Beta-tubulin folding c 98.9 2.9E-10 6.3E-15 115.7 -0.5 180 406-585 142-338 (505)
34 KOG1259 Nischarin, modulator o 98.9 5E-10 1.1E-14 108.2 0.4 125 19-147 284-411 (490)
35 KOG1909 Ran GTPase-activating 98.8 1.5E-10 3.3E-15 114.6 -3.6 108 478-585 183-310 (382)
36 PLN03150 hypothetical protein; 98.7 3.2E-08 7E-13 113.2 7.1 103 482-584 420-526 (623)
37 KOG1909 Ran GTPase-activating 98.6 2.7E-09 5.9E-14 105.9 -1.7 174 404-586 86-283 (382)
38 PF13855 LRR_8: Leucine rich r 98.6 2.7E-08 5.9E-13 76.1 3.5 57 528-584 2-60 (61)
39 PLN03150 hypothetical protein; 98.6 1.2E-07 2.6E-12 108.6 8.1 110 66-175 419-532 (623)
40 PF13855 LRR_8: Leucine rich r 98.5 1.7E-07 3.7E-12 71.7 4.9 59 504-562 1-61 (61)
41 KOG0531 Protein phosphatase 1, 98.5 3.7E-08 7.9E-13 107.9 0.8 35 506-540 234-268 (414)
42 PRK15386 type III secretion pr 98.5 2.6E-07 5.6E-12 96.8 6.9 138 458-624 74-219 (426)
43 KOG0531 Protein phosphatase 1, 98.4 5E-08 1.1E-12 106.8 0.8 191 17-216 70-267 (414)
44 KOG1859 Leucine-rich repeat pr 98.3 1.6E-08 3.5E-13 109.1 -5.4 115 473-590 180-296 (1096)
45 KOG2120 SCF ubiquitin ligase, 98.3 1E-08 2.3E-13 99.3 -6.8 192 46-238 138-348 (419)
46 KOG4341 F-box protein containi 98.2 6.5E-08 1.4E-12 98.4 -3.7 276 88-424 138-440 (483)
47 PF12799 LRR_4: Leucine Rich r 98.1 1.6E-06 3.5E-11 60.5 2.8 39 551-589 2-40 (44)
48 KOG4579 Leucine-rich repeat (L 98.1 8.2E-08 1.8E-12 82.4 -4.5 110 481-590 28-140 (177)
49 KOG2120 SCF ubiquitin ligase, 98.1 5.4E-08 1.2E-12 94.4 -6.3 224 68-344 139-377 (419)
50 PRK15386 type III secretion pr 98.1 5.1E-06 1.1E-10 87.2 7.2 38 411-450 73-111 (426)
51 PF12799 LRR_4: Leucine Rich r 98.1 2.7E-06 5.9E-11 59.4 3.3 40 527-566 1-40 (44)
52 KOG4579 Leucine-rich repeat (L 97.9 4.6E-07 1E-11 77.9 -3.8 131 435-586 28-159 (177)
53 KOG1859 Leucine-rich repeat pr 97.9 2.2E-07 4.8E-12 100.5 -7.6 130 35-169 155-290 (1096)
54 KOG2982 Uncharacterized conser 97.8 5.4E-06 1.2E-10 80.8 1.4 66 282-347 198-266 (418)
55 KOG4341 F-box protein containi 97.8 9.9E-07 2.1E-11 90.0 -4.7 275 44-367 138-439 (483)
56 KOG2982 Uncharacterized conser 97.7 8.5E-06 1.8E-10 79.5 -0.0 38 410-447 121-159 (418)
57 KOG1644 U2-associated snRNP A' 97.7 6.5E-05 1.4E-09 69.6 5.7 101 44-144 42-149 (233)
58 KOG1644 U2-associated snRNP A' 97.7 6.1E-05 1.3E-09 69.7 5.3 122 46-168 21-150 (233)
59 KOG3665 ZYG-1-like serine/thre 97.5 1.8E-05 4E-10 90.4 -0.8 124 44-168 122-260 (699)
60 KOG3665 ZYG-1-like serine/thre 97.3 0.00011 2.4E-09 84.2 2.8 104 64-169 121-231 (699)
61 COG5238 RNA1 Ran GTPase-activa 97.2 0.00022 4.9E-09 68.9 2.9 79 158-238 157-252 (388)
62 KOG2123 Uncharacterized conser 96.9 4.3E-05 9.3E-10 74.0 -4.8 99 16-117 16-123 (388)
63 COG5238 RNA1 Ran GTPase-activa 96.8 0.00038 8.3E-09 67.4 0.6 84 480-563 157-255 (388)
64 KOG2123 Uncharacterized conser 96.5 0.00015 3.2E-09 70.4 -4.5 96 45-141 20-123 (388)
65 KOG2739 Leucine-rich acidic nu 96.4 0.0012 2.7E-08 64.1 1.5 79 44-122 43-127 (260)
66 PF13306 LRR_5: Leucine rich r 96.4 0.0082 1.8E-07 53.7 6.5 104 9-120 2-112 (129)
67 PF13306 LRR_5: Leucine rich r 96.3 0.016 3.5E-07 51.7 7.8 108 476-589 8-118 (129)
68 KOG1947 Leucine rich repeat pr 96.2 0.0011 2.4E-08 74.7 -0.2 109 63-171 186-308 (482)
69 KOG2739 Leucine-rich acidic nu 96.2 0.0035 7.5E-08 61.1 2.8 85 501-586 40-129 (260)
70 PF00560 LRR_1: Leucine Rich R 95.8 0.0049 1.1E-07 35.7 1.3 19 529-547 2-20 (22)
71 KOG1947 Leucine rich repeat pr 95.4 0.0016 3.6E-08 73.3 -3.4 35 110-144 187-223 (482)
72 PF00560 LRR_1: Leucine Rich R 95.1 0.007 1.5E-07 35.0 0.4 20 551-570 1-20 (22)
73 PF13504 LRR_7: Leucine rich r 94.8 0.015 3.2E-07 31.2 1.1 16 574-589 2-17 (17)
74 PF13504 LRR_7: Leucine rich r 94.4 0.026 5.7E-07 30.2 1.4 16 551-566 2-17 (17)
75 KOG0473 Leucine-rich repeat pr 93.2 0.0028 6.1E-08 60.2 -6.2 86 500-585 38-123 (326)
76 KOG4308 LRR-containing protein 91.2 0.0035 7.7E-08 68.9 -9.6 175 412-586 89-303 (478)
77 KOG4308 LRR-containing protein 90.7 0.0029 6.2E-08 69.6 -10.9 105 480-584 204-329 (478)
78 KOG0473 Leucine-rich repeat pr 90.0 0.014 3E-07 55.7 -5.4 84 62-146 39-122 (326)
79 smart00369 LRR_TYP Leucine-ric 89.9 0.28 6.2E-06 29.5 2.2 20 572-591 1-20 (26)
80 smart00370 LRR Leucine-rich re 89.9 0.28 6.2E-06 29.5 2.2 20 572-591 1-20 (26)
81 smart00370 LRR Leucine-rich re 89.9 0.22 4.8E-06 30.0 1.7 20 549-568 1-20 (26)
82 smart00369 LRR_TYP Leucine-ric 89.9 0.22 4.8E-06 30.0 1.7 20 549-568 1-20 (26)
83 smart00364 LRR_BAC Leucine-ric 88.8 0.28 6.1E-06 29.4 1.4 19 573-591 2-20 (26)
84 KOG3864 Uncharacterized conser 88.3 0.074 1.6E-06 49.9 -1.9 63 111-173 101-166 (221)
85 KOG3864 Uncharacterized conser 84.7 0.22 4.8E-06 46.9 -0.8 35 409-443 150-185 (221)
86 PF07725 LRR_3: Leucine Rich R 84.1 0.79 1.7E-05 25.6 1.5 19 66-84 1-19 (20)
87 smart00364 LRR_BAC Leucine-ric 83.6 0.72 1.6E-05 27.7 1.3 18 550-567 2-19 (26)
88 smart00365 LRR_SD22 Leucine-ri 69.6 4.1 9E-05 24.6 1.9 16 573-588 2-17 (26)
89 PF13516 LRR_6: Leucine Rich r 69.0 1.1 2.5E-05 26.2 -0.6 14 111-124 2-15 (24)
90 smart00367 LRR_CC Leucine-rich 53.6 11 0.00024 22.5 1.8 15 572-586 1-16 (26)
91 KOG3763 mRNA export factor TAP 53.5 4 8.6E-05 44.7 -0.3 64 62-125 215-284 (585)
92 smart00368 LRR_RI Leucine rich 45.6 17 0.00037 22.3 1.8 12 551-562 3-14 (28)
93 KOG3763 mRNA export factor TAP 37.0 18 0.00038 39.9 1.4 61 44-104 218-286 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-46 Score=456.58 Aligned_cols=174 Identities=48% Similarity=0.775 Sum_probs=155.0
Q ss_pred CCccccceecCHHHHhcccccceeeeecCCCc----cccccCCCCCC--CceEEEEecCCCCccccc-ccccCceEEEcC
Q 003936 1 MSKINSEIQINPYTFSKMTELRLLKFCGSKNK----CMVHSLEGVPF--TELRYFEWHQFPLKTLNI-LHWENLVSLKMP 73 (785)
Q Consensus 1 ~s~~~~~~~i~~~~f~~l~~Lr~L~l~~~~~~----~~~~~~~~~~~--~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~ 73 (785)
|+++ +++.++.++|.+|++|+.|.++++... ...++|+++.. .+||+|+|++++++.+|. +.+++|++|+|+
T Consensus 541 ~~~~-~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~ 619 (1153)
T PLN03210 541 IDEI-DELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQ 619 (1153)
T ss_pred cCcc-ceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECc
Confidence 3556 578899999999999999999876421 23567888777 789999999999999999 889999999999
Q ss_pred CCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCC
Q 003936 74 GSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPT 153 (785)
Q Consensus 74 ~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~ 153 (785)
+++++.+|.++..+++|+.|+|+++...+.+|+++.+++|++|+|++|.....+|..++++++|+.|++++|..++.+|.
T Consensus 620 ~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 620 GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred CccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 99999999999999999999999998888899999999999999999998999999999999999999999999999998
Q ss_pred ccccccccEEeccCCcCCCCCC
Q 003936 154 SIHSKYLKRLVLRGCSNLKNLP 175 (785)
Q Consensus 154 ~~~l~~L~~L~ls~~~~l~~lp 175 (785)
.+++++|+.|++++|..++.+|
T Consensus 700 ~i~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 700 GINLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred cCCCCCCCEEeCCCCCCccccc
Confidence 7788889999998886555544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-47 Score=467.08 Aligned_cols=502 Identities=22% Similarity=0.296 Sum_probs=340.6
Q ss_pred CceEEEEecCCCCcc-ccc--ccccCceEEEcCCCCcc-cccccc-cCCCCCcEEecCCCccccCCCCCccccccceecc
Q 003936 44 TELRYFEWHQFPLKT-LNI--LHWENLVSLKMPGSKVT-QLWDDV-QNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDL 118 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~-lp~--~~l~~L~~L~L~~~~i~-~l~~~~-~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~L 118 (785)
.+++.|+++++.+.. ++. ..+++|++|+|++|++. .+|..+ ..+++|++|+|++|.+...+|. +.+++|++|+|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~L 147 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDL 147 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc-cccCCCCEEEC
Confidence 356677777666652 333 56667777777777665 555553 3667777777777765554443 44666777777
Q ss_pred ccccCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccc--ccccccccccccccc-
Q 003936 119 GYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTS--CHLRSTLPLLGVGIE- 194 (785)
Q Consensus 119 s~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~--~~L~~~L~l~~~~i~- 194 (785)
++|.+.+.+|..++++++|++|++++|...+.+|..+ ++++|++|++++|.....+|.... .+|+ .+++++|.+.
T Consensus 148 s~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~ 226 (968)
T PLN00113 148 SNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK-WIYLGYNNLSG 226 (968)
T ss_pred cCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCcc-EEECcCCccCC
Confidence 7776666666667777777777777766666666666 667777777777665555555443 4566 6677776664
Q ss_pred ccCcchhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCcc----CCcccccccCCC
Q 003936 195 ELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKE----QPSSELKLKKCP 270 (785)
Q Consensus 195 ~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~----~~~~~L~l~~~~ 270 (785)
.+|..++++++|++|++++|.+.+.+|..++++++|+.|+++++ .+.+..... .....+++++|.
T Consensus 227 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-----------~l~~~~p~~l~~l~~L~~L~Ls~n~ 295 (968)
T PLN00113 227 EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQN-----------KLSGPIPPSIFSLQKLISLDLSDNS 295 (968)
T ss_pred cCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCC-----------eeeccCchhHhhccCcCEEECcCCe
Confidence 56667777777777777777777777766666666665555443 221110000 001112333333
Q ss_pred CCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccc-cCCccccCccccceecccCccCCcccccc
Q 003936 271 RPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIR-ELPEGLGQLALLSKLELKNCSELEYISSS 349 (785)
Q Consensus 271 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~ 349 (785)
..+.+|.++..+++|+.|++.+|...+.+|..+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+.+.+|..
T Consensus 296 l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~ 375 (968)
T PLN00113 296 LSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG 375 (968)
T ss_pred eccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh
Confidence 33444444445555555555555555555555555555555555555554 44444555555555555555555555555
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcc
Q 003936 350 IFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDE 429 (785)
Q Consensus 350 ~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~ 429 (785)
+..+++|+.|++++|. ....+|..+..+++|+.|++++|.+.+.+|..
T Consensus 376 ~~~~~~L~~L~l~~n~--------------------------------l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 376 LCSSGNLFKLILFSNS--------------------------------LEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred HhCcCCCCEEECcCCE--------------------------------ecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence 5555555555555543 22345666778888888898888888888888
Q ss_pred cCCcccchhhhccCcccc-ccChhhhhhh-hcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccc
Q 003936 430 LGNLEALEELRVEGTGIR-EVPKSLAQLA-LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLK 507 (785)
Q Consensus 430 ~~~l~~L~~L~L~~n~i~-~lp~~~~~l~-L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 507 (785)
+..+++|+.|++++|.++ .+|..+..+. |+.|++++|...+.+|..+. .++|+.|++++|++.+..|..+.++++|+
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~-~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 502 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRLENLDLSRNQFSGAVPRKLGSLSELM 502 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-cccceEEECcCCccCCccChhhhhhhccC
Confidence 888888888899888887 4454444443 88888888888888887654 48899999999999999999999999999
Q ss_pred eEEecCeecc-ccCcccCCCCCCcEEEccCCcccc-ccccccCCCCCCEEEcccCCCCC-CCCcCcCCCCCCEEeCCCCC
Q 003936 508 VLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQI-IPESLNQLSSLVSLKLSNNNLER-IPERLDPLSSLKYLDLFENN 584 (785)
Q Consensus 508 ~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~l~~n~ 584 (785)
.|++++|.+. .+|..+..+++|++|+|++|.+++ +|..+..+++|+.|+|++|++++ +|..+..+++|+.|++++|+
T Consensus 503 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~ 582 (968)
T PLN00113 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH 582 (968)
T ss_pred EEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc
Confidence 9999999987 568889999999999999999986 78889999999999999999985 79889999999999999999
Q ss_pred C-CCCccc
Q 003936 585 L-DRIPEY 591 (785)
Q Consensus 585 l-~~lp~~ 591 (785)
+ ..+|..
T Consensus 583 l~~~~p~~ 590 (968)
T PLN00113 583 LHGSLPST 590 (968)
T ss_pred ceeeCCCc
Confidence 4 467753
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-47 Score=465.40 Aligned_cols=505 Identities=21% Similarity=0.262 Sum_probs=367.1
Q ss_pred HHHhcccccceeeeecCCCccccccCCCCC-C-CceEEEEecCCCCc-ccccccccCceEEEcCCCCcc-cccccccCCC
Q 003936 13 YTFSKMTELRLLKFCGSKNKCMVHSLEGVP-F-TELRYFEWHQFPLK-TLNILHWENLVSLKMPGSKVT-QLWDDVQNLV 88 (785)
Q Consensus 13 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~-~-~~L~~L~l~~~~l~-~lp~~~l~~L~~L~L~~~~i~-~l~~~~~~l~ 88 (785)
.+|.++++|++|++++|.+. ..+|.++. . ++||+|++++|.+. .+|...+++|++|++++|.++ .+|..+++++
T Consensus 87 ~~~~~l~~L~~L~Ls~n~~~--~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~ 164 (968)
T PLN00113 87 SAIFRLPYIQTINLSNNQLS--GPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFS 164 (968)
T ss_pred hHHhCCCCCCEEECCCCccC--CcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCC
Confidence 45556666666666665543 23454443 2 55666666666554 233344556666666666554 4455556666
Q ss_pred CCcEEecCCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEecc
Q 003936 89 SLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLR 166 (785)
Q Consensus 89 ~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls 166 (785)
+|++|+|++|.+...+| .++.+++|++|++++|.+.+.+|..++++++|++|++++|.....+|..+ ++++|++|+++
T Consensus 165 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 244 (968)
T PLN00113 165 SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV 244 (968)
T ss_pred CCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc
Confidence 66666666665554454 35556666666666665555556566666666666666655555555555 55666666666
Q ss_pred CCcCCCCCCCccc--ccccccccccccccc-ccCcchhccccccceeccccccccccchhhhcccccccccccCCCCCcc
Q 003936 167 GCSNLKNLPKMTS--CHLRSTLPLLGVGIE-ELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQF 243 (785)
Q Consensus 167 ~~~~l~~lp~~~~--~~L~~~L~l~~~~i~-~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~ 243 (785)
+|...+.+|.... .+|+ .|++++|.+. .+|.++.++++|++|++++|.+.+.+|..+.++++|+.
T Consensus 245 ~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~----------- 312 (968)
T PLN00113 245 YNNLTGPIPSSLGNLKNLQ-YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI----------- 312 (968)
T ss_pred CceeccccChhHhCCCCCC-EEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE-----------
Confidence 5544334443322 2344 4444444442 34444444455555555554444444444444433333
Q ss_pred ccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccc-cC
Q 003936 244 LEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIR-EL 322 (785)
Q Consensus 244 L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~-~l 322 (785)
+++++|...+..|..+..+++|+.|++.+|...+.+|..++.+++|+.|++++|.+. .+
T Consensus 313 --------------------L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 313 --------------------LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred --------------------EECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence 334444555667777888999999999999988899999999999999999999998 67
Q ss_pred CccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccC
Q 003936 323 PEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESL 402 (785)
Q Consensus 323 p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l 402 (785)
|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|. ..+.+
T Consensus 373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~--------------------------------l~~~~ 420 (968)
T PLN00113 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS--------------------------------FSGEL 420 (968)
T ss_pred ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE--------------------------------eeeEC
Confidence 8888889999999999999999999999999999999999986 22345
Q ss_pred CccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc-ccChhhhhhhhcccccccCCCCccCCccccCCCC
Q 003936 403 PSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR-EVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKS 481 (785)
Q Consensus 403 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~ 481 (785)
|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+. .+|..+....++.|++++|...+.+|..+..+++
T Consensus 421 p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~ 500 (968)
T PLN00113 421 PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSE 500 (968)
T ss_pred ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhc
Confidence 667888999999999999999999988889999999999999987 6676665556999999999999999999999999
Q ss_pred CCEEEeeCCcCcccCCCccccccccceEEecCeecc-ccCcccCCCCCCcEEEccCCcccc-ccccccCCCCCCEEEccc
Q 003936 482 LTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQI-IPESLNQLSSLVSLKLSN 559 (785)
Q Consensus 482 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~ 559 (785)
|+.|++++|.+.+.+|..+.++++|+.|+|++|.++ .+|..+..+++|+.|+|++|++.+ +|..+..+++|+.|++++
T Consensus 501 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~ 580 (968)
T PLN00113 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISH 580 (968)
T ss_pred cCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccC
Confidence 999999999999999999999999999999999998 568899999999999999999985 899999999999999999
Q ss_pred CCCCC-CCCcCcCCCCCCEEeCCCCC
Q 003936 560 NNLER-IPERLDPLSSLKYLDLFENN 584 (785)
Q Consensus 560 n~l~~-lp~~l~~l~~L~~L~l~~n~ 584 (785)
|++.. +|.. +.+..+....+.+|+
T Consensus 581 N~l~~~~p~~-~~~~~~~~~~~~~n~ 605 (968)
T PLN00113 581 NHLHGSLPST-GAFLAINASAVAGNI 605 (968)
T ss_pred CcceeeCCCc-chhcccChhhhcCCc
Confidence 99986 6753 445556666677776
No 4
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.1e-38 Score=314.11 Aligned_cols=484 Identities=26% Similarity=0.328 Sum_probs=280.7
Q ss_pred CceEEEEecCCCCccccc--ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceeccccc
Q 003936 44 TELRYFEWHQFPLKTLNI--LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYC 121 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~--~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n 121 (785)
..|..+.+++|.+..+.. ..+..|.+|++++|++.++|.+++.+..++.|+.++|++....+.++.+.+|+.|+.++|
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 334444444444443333 444444444444444444444444444444444444443332224444444444444444
Q ss_pred cCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCcc-c-cccccccccccccccccCc
Q 003936 122 SSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMT-S-CHLRSTLPLLGVGIEELPS 198 (785)
Q Consensus 122 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~-~-~~L~~~L~l~~~~i~~lp~ 198 (785)
. ..++|++++.+..|..|+..+| .+.++|.++ .+.+|..+++.+|. ++.+|+.. . ..|+ +++...|-++.+|.
T Consensus 125 ~-~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~-~ld~~~N~L~tlP~ 200 (565)
T KOG0472|consen 125 E-LKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLK-HLDCNSNLLETLPP 200 (565)
T ss_pred c-eeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHH-hcccchhhhhcCCh
Confidence 3 3344444444444444444442 233333333 44444444444442 22222211 1 3344 45555555666666
Q ss_pred chhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCC
Q 003936 199 SIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSG 278 (785)
Q Consensus 199 ~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~ 278 (785)
.++.+.+|+.|++..|++.. +| .|+.+. .|+.+.++.|.+. .+|..
T Consensus 201 ~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs-----------~L~Elh~g~N~i~---------------------~lpae 246 (565)
T KOG0472|consen 201 ELGGLESLELLYLRRNKIRF-LP-EFPGCS-----------LLKELHVGENQIE---------------------MLPAE 246 (565)
T ss_pred hhcchhhhHHHHhhhccccc-CC-CCCccH-----------HHHHHHhcccHHH---------------------hhHHH
Confidence 67777777777777665432 22 233333 3333333333331 11111
Q ss_pred c-cCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccC-----
Q 003936 279 Q-CMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFK----- 352 (785)
Q Consensus 279 ~-~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~----- 352 (785)
. .+++++..|++.++. ++..|+.+.-+.+|+.||+++|.|+.+|..+|++ .|+.|.+.+|++.+.-.+.+..
T Consensus 247 ~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~v 324 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEV 324 (565)
T ss_pred Hhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHH
Confidence 1 134444444444432 3555666666666667777777777666666666 6666666666644321111100
Q ss_pred CCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCC
Q 003936 353 LKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGN 432 (785)
Q Consensus 353 l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~ 432 (785)
++-|+.- ..|.. ++..+ +-.....+. .-... .....+.+.+.|++++-+. ..+|+....
T Consensus 325 LKyLrs~--~~~dg-----------lS~se--~~~e~~~t~----~~~~~-~~~~~~i~tkiL~~s~~ql-t~VPdEVfe 383 (565)
T KOG0472|consen 325 LKYLRSK--IKDDG-----------LSQSE--GGTETAMTL----PSESF-PDIYAIITTKILDVSDKQL-TLVPDEVFE 383 (565)
T ss_pred HHHHHHh--hccCC-----------CCCCc--ccccccCCC----CCCcc-cchhhhhhhhhhccccccc-ccCCHHHHH
Confidence 0111100 00000 00000 000000000 00011 1234566788888888654 445544332
Q ss_pred ccc---chhhhccCccccccChhhhhhh-hcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccce
Q 003936 433 LEA---LEELRVEGTGIREVPKSLAQLA-LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKV 508 (785)
Q Consensus 433 l~~---L~~L~L~~n~i~~lp~~~~~l~-L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 508 (785)
... ....++++|++.++|..+..+. +.+.-+..++..+.+|..+..+++|+.|++++|. +..+|..++.+..|+.
T Consensus 384 a~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~ 462 (565)
T KOG0472|consen 384 AAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQT 462 (565)
T ss_pred HhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhhe
Confidence 222 6778999999999999887775 5555556667778888889999999999999876 4568888999999999
Q ss_pred EEecCeeccccCcccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCCC
Q 003936 509 LTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDR 587 (785)
Q Consensus 509 L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~ 587 (785)
|+++.|++..+|..+..+..|+.+-.++|++..++.+ +.++.+|.+|||.+|.+..+|+.++++++|++|++.+|+++
T Consensus 463 LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr- 541 (565)
T KOG0472|consen 463 LNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR- 541 (565)
T ss_pred ecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC-
Confidence 9999999999999888888899999999999998765 99999999999999999999999999999999999999988
Q ss_pred Ccc
Q 003936 588 IPE 590 (785)
Q Consensus 588 lp~ 590 (785)
.|.
T Consensus 542 ~Pr 544 (565)
T KOG0472|consen 542 QPR 544 (565)
T ss_pred CCH
Confidence 553
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.6e-36 Score=297.49 Aligned_cols=469 Identities=24% Similarity=0.322 Sum_probs=327.1
Q ss_pred cCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceeccccccCccccccccccCCcccEEecCC
Q 003936 65 ENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDR 144 (785)
Q Consensus 65 ~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~ 144 (785)
..|..|.+++|.++.+.+.+.++..|.+|++.+|+.....|+++.+..++.|+.++|. ..++|+.++.+..|++|+.+.
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHhhhhhhhhhhccc
Confidence 4588899999999999889999999999999999987777799999999999999986 778999999999999999999
Q ss_pred CCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccc--cccccccccccccccccCcchhccccccceeccccccccccc
Q 003936 145 CKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTS--CHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENIS 221 (785)
Q Consensus 145 ~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~--~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~ 221 (785)
| ....+|..+ .+..|+.++..+| .+..+|+..+ ..+. .+.+.+|.++++|+..-+++.|++|+.-.| ..+.+|
T Consensus 124 n-~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~-~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP 199 (565)
T KOG0472|consen 124 N-ELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLS-KLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLP 199 (565)
T ss_pred c-ceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHH-HhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCC
Confidence 5 566666667 8999999998887 5666776665 4566 889999999999998888999999998877 456778
Q ss_pred hhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCc
Q 003936 222 SSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPD 301 (785)
Q Consensus 222 ~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~ 301 (785)
..++.+.+|+.|+++.+. + ..+| .+..+..|++|.+..+. ++.+|.
T Consensus 200 ~~lg~l~~L~~LyL~~Nk-----------i---------------------~~lP-ef~gcs~L~Elh~g~N~-i~~lpa 245 (565)
T KOG0472|consen 200 PELGGLESLELLYLRRNK-----------I---------------------RFLP-EFPGCSLLKELHVGENQ-IEMLPA 245 (565)
T ss_pred hhhcchhhhHHHHhhhcc-----------c---------------------ccCC-CCCccHHHHHHHhcccH-HHhhHH
Confidence 888888888877776642 1 1222 22234444444443332 233333
Q ss_pred cc-cCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCC
Q 003936 302 EL-GNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDG 380 (785)
Q Consensus 302 ~l-~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~ 380 (785)
.. .+++++..||++.|+++++|..+..+.+|++||+++|. ...+|.+++++ .|+.|.+.+|
T Consensus 246 e~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGN---------------- 307 (565)
T KOG0472|consen 246 EHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGN---------------- 307 (565)
T ss_pred HHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCC----------------
Confidence 32 25555555555555555555555555555555555543 22344444444 4444444444
Q ss_pred CCCcccCccccccCCCCCCccCCcccc--CCCCCcEEEecccc-CCCcCCcccCCcccchhhhccCccccccChhhhhhh
Q 003936 381 SGIERIPSSVLKLNKCSKLESLPSSLC--MFKSLTSLEIIDCK-KLERLPDELGNLEALEELRVEGTGIREVPKSLAQLA 457 (785)
Q Consensus 381 ~~i~~lp~~~l~l~~~~~l~~l~~~~~--~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~ 457 (785)
.+.++...++.-.--..++.+-+.+. ++.+=+.=.-+.-. ..+..| ....+.+.+.|++++-+++.+|..++...
T Consensus 308 -PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt~VPdEVfea~ 385 (565)
T KOG0472|consen 308 -PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLTLVPDEVFEAA 385 (565)
T ss_pred -chHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCccc-chhhhhhhhhhcccccccccCCHHHHHHh
Confidence 34433332210000000000000000 00000000000000 000111 12346678899999999999998877654
Q ss_pred ----hcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEE
Q 003936 458 ----LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLV 533 (785)
Q Consensus 458 ----L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~ 533 (785)
....+++.|. +..+|..+..+..+.+.-+..++..+-+|..+..+++|..|+|++|.+..+|..++.+..|+.||
T Consensus 386 ~~~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~Ln 464 (565)
T KOG0472|consen 386 KSEIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLN 464 (565)
T ss_pred hhcceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheec
Confidence 5666777664 44567666655666655555666667778888999999999999999999999999999999999
Q ss_pred ccCCccccccccccCCCCCCEEEcccCCCCCCCCc-CcCCCCCCEEeCCCCCCCCCccccc
Q 003936 534 LSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLDRIPEYLR 593 (785)
Q Consensus 534 Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~lp~~~~ 593 (785)
+|.|++..+|..+..+..|+.+-.++|++..+++. +.++.+|.+||+.+|.++++|+.++
T Consensus 465 lS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lg 525 (565)
T KOG0472|consen 465 LSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILG 525 (565)
T ss_pred ccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhc
Confidence 99999999999988888899998899999998655 9999999999999999999987643
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=4.3e-33 Score=286.65 Aligned_cols=380 Identities=22% Similarity=0.300 Sum_probs=233.4
Q ss_pred CceEEEEecCCCCccccc-----ccccCceEEEcCCCCcccc-cccccCCCCCcEEecCCCccccCCCCCcccc-cccee
Q 003936 44 TELRYFEWHQFPLKTLNI-----LHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQ-NLEIL 116 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-----~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~-~L~~L 116 (785)
-.-+.|+.++..+..+.. .-+..-+.|++++|++..+ +..|.++++|+.+++.+|. ++.+|.++... +|+.|
T Consensus 52 c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 52 CNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPRFGHESGHLEKL 130 (873)
T ss_pred CCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccch-hhhcccccccccceeEE
Confidence 456778888888876533 4455677899999999876 5668899999999999996 67788766554 59999
Q ss_pred ccccccCccccccccccCCcccEEecCCCCCCCcCCCcc--ccccccEEeccCCcCCCCCCCcccccccccccccccccc
Q 003936 117 DLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIE 194 (785)
Q Consensus 117 ~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~--~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~ 194 (785)
+|.+|.+...-.+.+..++.|+.|||+.| .+..+|..- .-.++++|+|++| .|+
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N-----------------------~It 186 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASN-----------------------RIT 186 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccc-----------------------ccc
Confidence 99998877777778888999999999985 444444322 4456666666665 444
Q ss_pred ccCc-chhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCC
Q 003936 195 ELPS-SIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPE 273 (785)
Q Consensus 195 ~lp~-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~ 273 (785)
.+.. .|..+.+|..|.|++|.++...+..|.++++|+.|++..+ .|.-.
T Consensus 187 ~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN-----------~iriv------------------- 236 (873)
T KOG4194|consen 187 TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN-----------RIRIV------------------- 236 (873)
T ss_pred ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc-----------ceeee-------------------
Confidence 4432 3556667777777777666555555555555555544432 11000
Q ss_pred CCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCcc-ccCccccceecccCccCCccccccccC
Q 003936 274 SLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSSIFK 352 (785)
Q Consensus 274 ~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~ 352 (785)
-...|.++++|+.|.+..|.|..+.++ |-.+.++++|+|+.|+....-..++.+
T Consensus 237 -------------------------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg 291 (873)
T KOG4194|consen 237 -------------------------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG 291 (873)
T ss_pred -------------------------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc
Confidence 011255566677777777777766554 556667777777776666555555666
Q ss_pred CCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCC
Q 003936 353 LKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGN 432 (785)
Q Consensus 353 l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~ 432 (785)
+++|+.|++++|. |.. --++++...++|+.|+|++|.+...-+..|..
T Consensus 292 Lt~L~~L~lS~Na-----------------I~r---------------ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~ 339 (873)
T KOG4194|consen 292 LTSLEQLDLSYNA-----------------IQR---------------IHIDSWSFTQKLKELDLSSNRITRLDEGSFRV 339 (873)
T ss_pred cchhhhhccchhh-----------------hhe---------------eecchhhhcccceeEeccccccccCChhHHHH
Confidence 6666666666553 110 01123344556666666666655555555666
Q ss_pred cccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCC---CccccccccceE
Q 003936 433 LEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLP---DEIGNLEYLKVL 509 (785)
Q Consensus 433 l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~l~~L~~L 509 (785)
+..|++|.|++|++..+.+.. +..+++|+.|+|++|.+...+. ..|.++++|+.|
T Consensus 340 L~~Le~LnLs~Nsi~~l~e~a----------------------f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 340 LSQLEELNLSHNSIDHLAEGA----------------------FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred HHHhhhhcccccchHHHHhhH----------------------HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 666666666666655544322 1122666666666666654433 234556666666
Q ss_pred EecCeeccccC-cccCCCCCCcEEEccCCccccc-cccccCCCCCCEEEcc
Q 003936 510 TIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLKLS 558 (785)
Q Consensus 510 ~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~ 558 (785)
++.+|++..|| .+|.+++.|++|||.+|.|..| |.+|..+ .|++|.+.
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 66666666664 3556666666666666666553 3445555 55555443
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.97 E-value=4.7e-34 Score=309.35 Aligned_cols=466 Identities=23% Similarity=0.232 Sum_probs=331.1
Q ss_pred cccCCCCCC-CceEEEEecCCCCccccc---ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccc
Q 003936 35 VHSLEGVPF-TELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLA 110 (785)
Q Consensus 35 ~~~~~~~~~-~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l 110 (785)
..+|..+.. ..+..|++..|-+-..|- ...-+|+.|||++|.+...|..+..+.+|+.|+++.|.+.....+.+.+
T Consensus 11 ~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~ 90 (1081)
T KOG0618|consen 11 ELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNM 90 (1081)
T ss_pred cccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhh
Confidence 455555555 447777777776655333 3333477777887777777777777777888888777543333357777
Q ss_pred cccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccccccccccccc
Q 003936 111 QNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLL 189 (785)
Q Consensus 111 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~ 189 (785)
.+|++|+|.+|. ...+|.++..+++|++|+++.| ....+|..+ .++.++.+..++|.++..++... ++ .+++.
T Consensus 91 ~~l~~lnL~~n~-l~~lP~~~~~lknl~~LdlS~N-~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~---ik-~~~l~ 164 (1081)
T KOG0618|consen 91 RNLQYLNLKNNR-LQSLPASISELKNLQYLDLSFN-HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS---IK-KLDLR 164 (1081)
T ss_pred hcchhheeccch-hhcCchhHHhhhcccccccchh-ccCCCchhHHhhhHHHHHhhhcchhhhhhcccc---ch-hhhhh
Confidence 778888877764 6677777778888888888873 455666666 67777777777775555555444 33 55666
Q ss_pred cccc-cccCcchhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccC
Q 003936 190 GVGI-EELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKK 268 (785)
Q Consensus 190 ~~~i-~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~ 268 (785)
.+.+ ..++..+..+++ .|+|+.|.+. .++++.+++|+.+..+.|++....
T Consensus 165 ~n~l~~~~~~~i~~l~~--~ldLr~N~~~--------------~~dls~~~~l~~l~c~rn~ls~l~------------- 215 (1081)
T KOG0618|consen 165 LNVLGGSFLIDIYNLTH--QLDLRYNEME--------------VLDLSNLANLEVLHCERNQLSELE------------- 215 (1081)
T ss_pred hhhcccchhcchhhhhe--eeecccchhh--------------hhhhhhccchhhhhhhhcccceEE-------------
Confidence 6655 355666666666 6888887543 334455555555555554442211
Q ss_pred CCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccc
Q 003936 269 CPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISS 348 (785)
Q Consensus 269 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~ 348 (785)
..-++++.|+..+|...+..+ -..-.+|++++++.|+++.+|++++.+.+|+.+++.+|.+ ..+|.
T Consensus 216 -----------~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ 281 (1081)
T KOG0618|consen 216 -----------ISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPL 281 (1081)
T ss_pred -----------ecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHH
Confidence 123567777777776653222 1224578999999999999999999999999999999876 77788
Q ss_pred cccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCc
Q 003936 349 SIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPD 428 (785)
Q Consensus 349 ~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~ 428 (785)
.+...++|+.|.+.+| .++.+|.....+++|+.|++..|.+....+.
T Consensus 282 ri~~~~~L~~l~~~~n---------------------------------el~yip~~le~~~sL~tLdL~~N~L~~lp~~ 328 (1081)
T KOG0618|consen 282 RISRITSLVSLSAAYN---------------------------------ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDN 328 (1081)
T ss_pred HHhhhhhHHHHHhhhh---------------------------------hhhhCCCcccccceeeeeeehhccccccchH
Confidence 8888888888888887 4566777777889999999999875443333
Q ss_pred ccCCccc-chhhhccCccccccChhhh--hhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccc
Q 003936 429 ELGNLEA-LEELRVEGTGIREVPKSLA--QLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEY 505 (785)
Q Consensus 429 ~~~~l~~-L~~L~L~~n~i~~lp~~~~--~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 505 (785)
.+..... |+.|+.+.|.+...|..-. ...|+.|++.+|...+..-..+.+..+|+.|+|++|.+..-....+.+++.
T Consensus 329 ~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~ 408 (1081)
T KOG0618|consen 329 FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEE 408 (1081)
T ss_pred HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHH
Confidence 3333333 7788888888887774322 234888888888888776666777788999999998865544456778888
Q ss_pred cceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCC--CCCcCcCCCCCCEEeCCCC
Q 003936 506 LKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLER--IPERLDPLSSLKYLDLFEN 583 (785)
Q Consensus 506 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~--lp~~l~~l~~L~~L~l~~n 583 (785)
|++|+|++|+++.+|..+..+..|++|...+|.+...| .+..++.|+.+|++.|+++. +|+...+ ++|++||+++|
T Consensus 409 LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN 486 (1081)
T KOG0618|consen 409 LEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGN 486 (1081)
T ss_pred hHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCC
Confidence 99999999999999888888899999999999888888 78888899999999998886 4554443 78999999998
Q ss_pred C
Q 003936 584 N 584 (785)
Q Consensus 584 ~ 584 (785)
.
T Consensus 487 ~ 487 (1081)
T KOG0618|consen 487 T 487 (1081)
T ss_pred c
Confidence 7
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=9.8e-33 Score=285.51 Aligned_cols=109 Identities=18% Similarity=0.264 Sum_probs=62.6
Q ss_pred eEEEEecCCCCc--cccc--ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceeccccc
Q 003936 46 LRYFEWHQFPLK--TLNI--LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYC 121 (785)
Q Consensus 46 L~~L~l~~~~l~--~lp~--~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n 121 (785)
.|-+|+++|.++ .+|. ..+.+++-|.|..+++..+|+.++.+.+|++|.+++|++.+...+++.++.|+.+++.+|
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N 88 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDN 88 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhcc
Confidence 444555666554 4555 556666666666666666666666666666666666665555555666666666666655
Q ss_pred cCc-cccccccccCCcccEEecCCCCCCCcCCCcc
Q 003936 122 SSL-TETHSSIQYLNKLEVLDLDRCKSLTSLPTSI 155 (785)
Q Consensus 122 ~~~-~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~ 155 (785)
+.. .-+|..+-.+..|..|||++ +.+++.|..+
T Consensus 89 ~LKnsGiP~diF~l~dLt~lDLSh-NqL~EvP~~L 122 (1255)
T KOG0444|consen 89 NLKNSGIPTDIFRLKDLTILDLSH-NQLREVPTNL 122 (1255)
T ss_pred ccccCCCCchhcccccceeeecch-hhhhhcchhh
Confidence 432 24555555666666666665 3344444433
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=1.8e-30 Score=267.48 Aligned_cols=392 Identities=17% Similarity=0.172 Sum_probs=296.1
Q ss_pred ceeeeecCCCcc--ccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcccccccccCCCCCcEEecC
Q 003936 22 RLLKFCGSKNKC--MVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLK 96 (785)
Q Consensus 22 r~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls 96 (785)
+.|+.+++.+.. +..++ ++-...-+.|++++|.+..+.. .++++|+++++.+|.++.+|.......+|+.|+|.
T Consensus 55 ~lldcs~~~lea~~~~~l~-g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~ 133 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLK-GFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR 133 (873)
T ss_pred eeeecCccccccccccccC-CcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence 556666655421 01112 2222667889999999987766 88999999999999999999988888999999999
Q ss_pred CCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCC
Q 003936 97 YSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNL 174 (785)
Q Consensus 97 ~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~l 174 (785)
+|.+.+.-. ++..++.||.||||.|.+...--.+|..-.++++|+|++|.+...-...+ .+.+|-+|.|++
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr------- 206 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR------- 206 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-------
Confidence 998665544 58899999999999997555444567777899999999976554333333 555666555555
Q ss_pred CCccccccccccccccccccccCc-chhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCC
Q 003936 175 PKMTSCHLRSTLPLLGVGIEELPS-SIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDG 253 (785)
Q Consensus 175 p~~~~~~L~~~L~l~~~~i~~lp~-~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~ 253 (785)
|.++.+|. .|.++++|+.|+|..|++...--..|.++++|+.|.+. .|.+..
T Consensus 207 ----------------NrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq-----------rN~I~k 259 (873)
T KOG4194|consen 207 ----------------NRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ-----------RNDISK 259 (873)
T ss_pred ----------------CcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh-----------hcCccc
Confidence 45566664 46669999999999987755434444455544444433 333311
Q ss_pred CCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCc-cccCcccc
Q 003936 254 TRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPE-GLGQLALL 332 (785)
Q Consensus 254 ~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L 332 (785)
. -...|..|.++++|+|+.|+++.+.. ++-++++|
T Consensus 260 L--------------------------------------------~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L 295 (873)
T KOG4194|consen 260 L--------------------------------------------DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSL 295 (873)
T ss_pred c--------------------------------------------cCcceeeecccceeecccchhhhhhcccccccchh
Confidence 1 12347778999999999999998866 57889999
Q ss_pred ceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCC-ccccCCCC
Q 003936 333 SKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLP-SSLCMFKS 411 (785)
Q Consensus 333 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~-~~~~~l~~ 411 (785)
+.|++++|.+...-++++.-.++|+.|+|++|. +..++ .++..+..
T Consensus 296 ~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~---------------------------------i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 296 EQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR---------------------------------ITRLDEGSFRVLSQ 342 (873)
T ss_pred hhhccchhhhheeecchhhhcccceeEeccccc---------------------------------cccCChhHHHHHHH
Confidence 999999999999999999899999999999885 22222 45677899
Q ss_pred CcEEEeccccCCCcCCcccCCcccchhhhccCccccc-cChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCC
Q 003936 412 LTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIRE-VPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDC 490 (785)
Q Consensus 412 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~-lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~ 490 (785)
|+.|+|++|++...-...|..+.+|++|+|++|.+.- +... ...+..+++|+.|.+.+|
T Consensus 343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDa--------------------a~~f~gl~~LrkL~l~gN 402 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDA--------------------AVAFNGLPSLRKLRLTGN 402 (873)
T ss_pred hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecc--------------------hhhhccchhhhheeecCc
Confidence 9999999999877777788999999999999999873 3221 112334599999999999
Q ss_pred cCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccC------Cccccccccc
Q 003936 491 KNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSD------NNLQIIPESL 546 (785)
Q Consensus 491 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~------n~l~~lp~~l 546 (785)
++......+|.++++|++|+|.+|.|.+| |.+|..+ .|++|.++. |++.-++.++
T Consensus 403 qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl 464 (873)
T KOG4194|consen 403 QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWL 464 (873)
T ss_pred eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHH
Confidence 98887778999999999999999999998 8889888 899987654 5555555543
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=2.7e-32 Score=295.75 Aligned_cols=470 Identities=23% Similarity=0.261 Sum_probs=327.1
Q ss_pred EEecCCCCccccc--ccccCceEEEcCCCCccccccc-ccCCCCCcEEecCCCccccCCCCCccccccceeccccccCcc
Q 003936 49 FEWHQFPLKTLNI--LHWENLVSLKMPGSKVTQLWDD-VQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLT 125 (785)
Q Consensus 49 L~l~~~~l~~lp~--~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~ 125 (785)
+|.+...+.-||. ..-..+..|+++.|.+-..|-. +.+..+|+.|||++|++..-.-.+..+.+|+.|+++.|. +.
T Consensus 3 vd~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~-i~ 81 (1081)
T KOG0618|consen 3 VDASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY-IR 81 (1081)
T ss_pred cccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhh-Hh
Confidence 5677788888888 5556699999999988776633 445566999999999754433378999999999999985 77
Q ss_pred ccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccc-c-ccccccccccc-cccccCcchh
Q 003936 126 ETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTS-C-HLRSTLPLLGV-GIEELPSSIK 201 (785)
Q Consensus 126 ~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~-~-~L~~~L~l~~~-~i~~lp~~l~ 201 (785)
..|.+..++++|++|+|.+ +.+..+|..+ .+++|+.|++++|. ...+|.... . .+. .+..++| .+..++..
T Consensus 82 ~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~-~~~~s~N~~~~~lg~~-- 156 (1081)
T KOG0618|consen 82 SVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEE-ELAASNNEKIQRLGQT-- 156 (1081)
T ss_pred hCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHH-HHhhhcchhhhhhccc--
Confidence 8889999999999999998 6788999888 89999999999873 444443322 1 111 3333333 11111111
Q ss_pred ccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccC
Q 003936 202 CLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCM 281 (785)
Q Consensus 202 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~ 281 (785)
. .+.+++..+.+.+.++..+..+.. .| ++..|.+.. .....
T Consensus 157 --~-ik~~~l~~n~l~~~~~~~i~~l~~--~l-----------dLr~N~~~~-----------------------~dls~ 197 (1081)
T KOG0618|consen 157 --S-IKKLDLRLNVLGGSFLIDIYNLTH--QL-----------DLRYNEMEV-----------------------LDLSN 197 (1081)
T ss_pred --c-chhhhhhhhhcccchhcchhhhhe--ee-----------ecccchhhh-----------------------hhhhh
Confidence 1 344444444444333333333222 22 223332210 01112
Q ss_pred CCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEe
Q 003936 282 FKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEI 361 (785)
Q Consensus 282 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 361 (785)
+.+|+.|....+.... .--.-++|+.|+.+.|.++.+.. -....+|++++++.+++ ..+|+++..+.+|+.+..
T Consensus 198 ~~~l~~l~c~rn~ls~----l~~~g~~l~~L~a~~n~l~~~~~-~p~p~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~ 271 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSE----LEISGPSLTALYADHNPLTTLDV-HPVPLNLQYLDISHNNL-SNLPEWIGACANLEALNA 271 (1081)
T ss_pred ccchhhhhhhhcccce----EEecCcchheeeeccCcceeecc-ccccccceeeecchhhh-hcchHHHHhcccceEecc
Confidence 3333333333222111 11123457777777777663322 12345778888888654 445577777888888777
Q ss_pred eCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhc
Q 003936 362 SNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRV 441 (785)
Q Consensus 362 ~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L 441 (785)
.+| .+..+|..+...++|+.|.+..|. .+.+|......+.|++|+|
T Consensus 272 n~N---------------------------------~l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 272 NHN---------------------------------RLVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cch---------------------------------hHHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeee
Confidence 776 345667777788899999999986 5677887888999999999
Q ss_pred cCccccccChhhhhhh---hcccccccCCCCccCC-ccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecc
Q 003936 442 EGTGIREVPKSLAQLA---LSKLKLKKCSSFESLP-SRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR 517 (785)
Q Consensus 442 ~~n~i~~lp~~~~~l~---L~~L~l~~~~~~~~lp-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 517 (785)
..|.+..+|..+.... +..+..+.++. ..+| ..-...+.|+.|.+.+|.+.......+.+..+||.|+|++|++.
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l-~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKL-STLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccc-cccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 9999999998554433 34444443333 3333 23334578999999999999888778999999999999999999
Q ss_pred ccCc-ccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCCC--Ccccccc
Q 003936 518 EVPE-SLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDR--IPEYLRS 594 (785)
Q Consensus 518 ~lp~-~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~--lp~~~~~ 594 (785)
++|+ .+.++..|++|+||+|+++.+|+.+..+..|++|...+|++..+| .+.+++.|+.+|++.|.|+. +|+.
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~--- 472 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEA--- 472 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhh---
Confidence 9985 568899999999999999999999999999999999999999999 78999999999999999874 5544
Q ss_pred CCCCCC-cccccccceeee
Q 003936 595 FPTSIP-SEFTSLRLSVDL 612 (785)
Q Consensus 595 ~~~~ip-~~l~~l~~~l~~ 612 (785)
.| +.|++|+++.+.
T Consensus 473 ----~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 473 ----LPSPNLKYLDLSGNT 487 (1081)
T ss_pred ----CCCcccceeeccCCc
Confidence 27 899996554443
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=3.3e-31 Score=274.22 Aligned_cols=356 Identities=25% Similarity=0.359 Sum_probs=243.7
Q ss_pred cccceeeeecCCCccccccCCCCCC-CceEEEEecCCCCccccc--ccccCceEEEcCCCCcccccccccCCCCCcEEec
Q 003936 19 TELRLLKFCGSKNKCMVHSLEGVPF-TELRYFEWHQFPLKTLNI--LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDL 95 (785)
Q Consensus 19 ~~Lr~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~--~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~L 95 (785)
+-.|-.++++|.+.+ ..+|..+.. +.++.|.|....+..+|. ..+.+|++|.+.+|++..+-..+..++.||.+++
T Consensus 7 pFVrGvDfsgNDFsg-~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSG-DRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV 85 (1255)
T ss_pred ceeecccccCCcCCC-CcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence 345667889988765 578888888 999999999999999999 9999999999999999999888999999999999
Q ss_pred CCCccccC-CC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc--ccccccEEeccCCcCC
Q 003936 96 KYSKLLTK-LP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSNL 171 (785)
Q Consensus 96 s~n~~~~~-~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~--~l~~L~~L~ls~~~~l 171 (785)
..|.+... +| ++-.+..|..||||+|+ +.+.|..+...+++-.|+|++| .+..+|..+ +++.|-.||+|+|
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~N--- 160 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNN--- 160 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccc---
Confidence 99976433 45 79999999999999997 8889999999999999999994 566777655 6666666666654
Q ss_pred CCCCCccccccccccccccccccccCcchhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCccc
Q 003936 172 KNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNI 251 (785)
Q Consensus 172 ~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~ 251 (785)
++..+|..+..+.+|++|.|++|++... .
T Consensus 161 --------------------rLe~LPPQ~RRL~~LqtL~Ls~NPL~hf------Q------------------------- 189 (1255)
T KOG0444|consen 161 --------------------RLEMLPPQIRRLSMLQTLKLSNNPLNHF------Q------------------------- 189 (1255)
T ss_pred --------------------hhhhcCHHHHHHhhhhhhhcCCChhhHH------H-------------------------
Confidence 3455556666666666666666643210 0
Q ss_pred CCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccc--cCCccccCc
Q 003936 252 DGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIR--ELPEGLGQL 329 (785)
Q Consensus 252 ~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~--~lp~~l~~l 329 (785)
+..+| .+++|+.|.+++++-+ .+|.++..+
T Consensus 190 --------------------------------------------LrQLP----smtsL~vLhms~TqRTl~N~Ptsld~l 221 (1255)
T KOG0444|consen 190 --------------------------------------------LRQLP----SMTSLSVLHMSNTQRTLDNIPTSLDDL 221 (1255)
T ss_pred --------------------------------------------HhcCc----cchhhhhhhcccccchhhcCCCchhhh
Confidence 01111 2555666677665443 556655556
Q ss_pred cccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCC
Q 003936 330 ALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMF 409 (785)
Q Consensus 330 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l 409 (785)
.+|..++++.|+ +..+|..+..+
T Consensus 222 ~NL~dvDlS~N~---------------------------------------------------------Lp~vPecly~l 244 (1255)
T KOG0444|consen 222 HNLRDVDLSENN---------------------------------------------------------LPIVPECLYKL 244 (1255)
T ss_pred hhhhhccccccC---------------------------------------------------------CCcchHHHhhh
Confidence 666665555532 33444455556
Q ss_pred CCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeC
Q 003936 410 KSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIID 489 (785)
Q Consensus 410 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~ 489 (785)
++|+.|++++|.+.+ +....+...+|++|+++.|+++.+|..+..+ +.|+.|.+.+
T Consensus 245 ~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL-----------------------~kL~kLy~n~ 300 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKL-----------------------TKLTKLYANN 300 (1255)
T ss_pred hhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhh-----------------------HHHHHHHhcc
Confidence 666666666665432 3333445567777777777777777766665 4555555555
Q ss_pred CcCc-ccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccC
Q 003936 490 CKNF-MRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNN 560 (785)
Q Consensus 490 ~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 560 (785)
|++. .-+|+.++.+..|+++..++|.+.-+|+.+..+..|+.|.|+.|.+..+|+++.-++.|+.||+..|
T Consensus 301 NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 301 NKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred CcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCC
Confidence 5542 2345555555555555555555555566666666666666666666666666655666666666555
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.6e-23 Score=255.28 Aligned_cols=317 Identities=26% Similarity=0.385 Sum_probs=264.3
Q ss_pred ecCHHHHhcc-cccceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc--ccccCceEEEcCCCC-cccccccc
Q 003936 9 QINPYTFSKM-TELRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI--LHWENLVSLKMPGSK-VTQLWDDV 84 (785)
Q Consensus 9 ~i~~~~f~~l-~~Lr~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~--~~l~~L~~L~L~~~~-i~~l~~~~ 84 (785)
+++ +.|..+ .+||.|.+.++.+ ..+|..+...+|+.|++.++.+..++. ..+++|+.|+|+++. +..+| .+
T Consensus 579 ~lp-~~~~~lp~~Lr~L~~~~~~l---~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~l 653 (1153)
T PLN03210 579 HLP-EGFDYLPPKLRLLRWDKYPL---RCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DL 653 (1153)
T ss_pred ecC-cchhhcCcccEEEEecCCCC---CCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-cc
Confidence 344 345555 5799999999887 678888766999999999999999988 789999999999875 66776 48
Q ss_pred cCCCCCcEEecCCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCccccccccEE
Q 003936 85 QNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRL 163 (785)
Q Consensus 85 ~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L 163 (785)
..+++|+.|+|++|.....+| .+..+++|+.|++++|...+.+|..+ ++++|++|++++|..+..+|.. ..+|++|
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L 730 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWL 730 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCee
Confidence 889999999999998888888 58999999999999999888998876 7999999999999988888753 4689999
Q ss_pred eccCCcCCCCCCCccc-cccccccccccccccccCc--------chhccccccceeccccccccccchhhhccccccccc
Q 003936 164 VLRGCSNLKNLPKMTS-CHLRSTLPLLGVGIEELPS--------SIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIR 234 (785)
Q Consensus 164 ~ls~~~~l~~lp~~~~-~~L~~~L~l~~~~i~~lp~--------~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 234 (785)
++++|. +..+|.... .+|+ .|.+.++....++. .....++|+.|++++|.....+|..++++++|+.|+
T Consensus 731 ~L~~n~-i~~lP~~~~l~~L~-~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~ 808 (1153)
T PLN03210 731 DLDETA-IEEFPSNLRLENLD-ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808 (1153)
T ss_pred ecCCCc-cccccccccccccc-cccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEE
Confidence 999885 677776543 5566 67776644333322 123357899999999999999999999999999999
Q ss_pred ccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeec
Q 003936 235 IHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLII 314 (785)
Q Consensus 235 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L 314 (785)
+++|.+++.+ |... .+++|+.|++.+|..+..+|.. .++|+.|++
T Consensus 809 Ls~C~~L~~L-------------------------------P~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~L 853 (1153)
T PLN03210 809 IENCINLETL-------------------------------PTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNL 853 (1153)
T ss_pred CCCCCCcCee-------------------------------CCCC-CccccCEEECCCCCcccccccc---ccccCEeEC
Confidence 9998777543 2222 4789999999999998888764 468999999
Q ss_pred cCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCC
Q 003936 315 DGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGF 370 (785)
Q Consensus 315 ~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 370 (785)
++|.++.+|.+++.+++|++|++++|+.+..+|.....+++|+.+++++|..++.+
T Consensus 854 s~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 854 SRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred CCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 99999999999999999999999999999999999999999999999999977654
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=7e-19 Score=198.86 Aligned_cols=96 Identities=33% Similarity=0.357 Sum_probs=56.4
Q ss_pred CCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccC
Q 003936 481 SLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNN 560 (785)
Q Consensus 481 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 560 (785)
+|+.|++++|.+.. +|.. ..+|+.|++++|.++.+|.. .++|+.|++++|.++.+|... .+|+.|++++|
T Consensus 363 ~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l~---~~L~~L~Ls~N 432 (788)
T PRK15387 363 ELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPMLP---SGLLSLSVYRN 432 (788)
T ss_pred ccceehhhcccccc-Cccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcch---hhhhhhhhccC
Confidence 44445555554432 3322 23456666666666666542 245666677777666666432 34566677777
Q ss_pred CCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 561 NLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 561 ~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
+++.+|..+..+++|+.|++++|+|+
T Consensus 433 qLt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 433 QLTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred cccccChHHhhccCCCeEECCCCCCC
Confidence 77667766666677777777777654
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.77 E-value=1.1e-19 Score=180.28 Aligned_cols=284 Identities=14% Similarity=0.089 Sum_probs=167.9
Q ss_pred EEEecCCCCcccccccccCceEEEcCCCCccccccc-ccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCcc
Q 003936 48 YFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDD-VQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLT 125 (785)
Q Consensus 48 ~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~ 125 (785)
.++.++-.+..+|..-++.-++++|..|.|+.+|.+ |+.+++||.|||++|.+..+.| .|.++.+|-.|-+.++..+.
T Consensus 50 ~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred eEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 345555566666665555667777777777777654 6777777777777777666666 36777776666665532344
Q ss_pred ccc-cccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccccccccccccccccccccCc-chhc
Q 003936 126 ETH-SSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPS-SIKC 202 (785)
Q Consensus 126 ~~~-~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~-~l~~ 202 (785)
.+| ..|+.|..|+.|.+.-|...-.....+ .+++|..|.+..| .++.++. .+..
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-----------------------~~q~i~~~tf~~ 186 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-----------------------KIQSICKGTFQG 186 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-----------------------hhhhhccccccc
Confidence 443 346677777776666543332222223 4555554444443 3333333 3444
Q ss_pred cccccceecccccccc------------ccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCccc----ccc
Q 003936 203 LSNIGELLIYSCKRLE------------NISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSE----LKL 266 (785)
Q Consensus 203 l~~L~~L~L~~~~~~~------------~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~----L~l 266 (785)
+..++++.+..|.+.. ..+..++.++...... +.+.++.......+.... -.+
T Consensus 187 l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~r-----------l~~~Ri~q~~a~kf~c~~esl~s~~ 255 (498)
T KOG4237|consen 187 LAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYR-----------LYYKRINQEDARKFLCSLESLPSRL 255 (498)
T ss_pred hhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHH-----------HHHHHhcccchhhhhhhHHhHHHhh
Confidence 5555555555544211 1111111111111111 111111111111110000 001
Q ss_pred c-CCCCCCCCCC-CccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCcc-ccCccccceecccCccCC
Q 003936 267 K-KCPRPESLPS-GQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSEL 343 (785)
Q Consensus 267 ~-~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~ 343 (785)
. .|.....-|. .+..+++|++|++++|.....-+.+|.....+++|.|..|++..+... |.++..|+.|+|.+|++.
T Consensus 256 ~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it 335 (498)
T KOG4237|consen 256 SSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT 335 (498)
T ss_pred ccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeE
Confidence 1 1111111121 255689999999999988878888999999999999999999977664 788999999999999999
Q ss_pred ccccccccCCCCCCEEEeeCCC
Q 003936 344 EYISSSIFKLKSVESIEISNCS 365 (785)
Q Consensus 344 ~~~~~~~~~l~~L~~L~l~~~~ 365 (785)
...|..|..+.+|.+|.+-.|+
T Consensus 336 ~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 336 TVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred EEecccccccceeeeeehccCc
Confidence 9999999999999999998887
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.75 E-value=1.5e-17 Score=188.16 Aligned_cols=111 Identities=23% Similarity=0.141 Sum_probs=61.5
Q ss_pred ceEEEEecCCCCcccccccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceeccccccCc
Q 003936 45 ELRYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSL 124 (785)
Q Consensus 45 ~L~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~ 124 (785)
.-..|+++++.++++|..-..+|+.|++.+|+++.+|.. .++|++|+|++|++. .+|.+ .++|+.|++++|. +
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~-L 274 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP-L 274 (788)
T ss_pred CCcEEEcCCCCCCcCCcchhcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCCc-h
Confidence 345667777777766662234677777777777766642 466677777776543 33432 3466666666665 3
Q ss_pred cccccccccCCcccEEecCCCCCCCcCCCccccccccEEeccCC
Q 003936 125 TETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGC 168 (785)
Q Consensus 125 ~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~ls~~ 168 (785)
..+|... .+|+.|++++| .++.+|. ..++|+.|++++|
T Consensus 275 ~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N 312 (788)
T PRK15387 275 THLPALP---SGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDN 312 (788)
T ss_pred hhhhhch---hhcCEEECcCC-ccccccc--cccccceeECCCC
Confidence 3344322 34556666664 3344443 2244555555554
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.74 E-value=5.2e-18 Score=193.31 Aligned_cols=246 Identities=27% Similarity=0.372 Sum_probs=156.4
Q ss_pred CCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeC
Q 003936 284 SLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISN 363 (785)
Q Consensus 284 ~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 363 (785)
+.+.|++.++. +..+|..+ .+.|+.|++++|.++.+|..+. ++|++|++++|.+. .+|..+. .+|+.|++++
T Consensus 179 ~~~~L~L~~~~-LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKILG-LTTIPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCCC-cCcCCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 45566665543 34555544 2467777887787777776543 47777777776644 4554332 3566666666
Q ss_pred CCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccC
Q 003936 364 CSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEG 443 (785)
Q Consensus 364 ~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~ 443 (785)
|. + ..+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++
T Consensus 251 N~-----------------L----------------~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~ 292 (754)
T PRK15370 251 NR-----------------I----------------TELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYD 292 (754)
T ss_pred Cc-----------------c----------------CcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCC
Confidence 63 1 12222221 35666666666544 3454332 3566666666
Q ss_pred ccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCccc
Q 003936 444 TGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESL 523 (785)
Q Consensus 444 n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~ 523 (785)
|.++.+|..+. ..++.|++++|... .+|..+. ++|+.|++++|.+.+ +|..+. ++|+.|++++|.++.+|..+
T Consensus 293 N~Lt~LP~~lp-~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~LP~~l 365 (754)
T PRK15370 293 NSIRTLPAHLP-SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVLPETL 365 (754)
T ss_pred CccccCcccch-hhHHHHHhcCCccc-cCCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcCChhh
Confidence 66666664432 13556666655433 3443332 678888888887654 555442 68888888888888887655
Q ss_pred CCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCc----CCCCCCEEeCCCCCCC
Q 003936 524 GQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLD----PLSSLKYLDLFENNLD 586 (785)
Q Consensus 524 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~----~l~~L~~L~l~~n~l~ 586 (785)
.++|+.|+|++|+++.+|..+. .+|+.|++++|+++.+|..+. .++.+..|++.+|++.
T Consensus 366 --p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 366 --PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred --cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 3688888888888888887654 368888888888888776543 3477888888888864
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.71 E-value=6.3e-19 Score=175.03 Aligned_cols=413 Identities=18% Similarity=0.196 Sum_probs=232.4
Q ss_pred EEEcCCCCcccccccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCC
Q 003936 69 SLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKS 147 (785)
Q Consensus 69 ~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~ 147 (785)
..+.++-.++.+|..+. +.-..++|..|.+....+ .|+.+++|+.|||++|.+...-|+.|..++.|..|-+-+++.
T Consensus 50 ~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 50 IVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred eEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 45667777888886654 567788999998655555 599999999999999998888899999999999988888788
Q ss_pred CCcCCCcc--ccccccEEeccCCcCCCCCCCccccccccccccccccccccC-cchhccccccceeccccccccccchhh
Q 003936 148 LTSLPTSI--HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELP-SSIKCLSNIGELLIYSCKRLENISSSI 224 (785)
Q Consensus 148 ~~~~p~~~--~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~~l 224 (785)
++.+|... ++..|+.|.+.-| .+.-++ ..+..+++|..|.+.+|.+...-...+
T Consensus 128 I~~l~k~~F~gL~slqrLllNan-----------------------~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf 184 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNAN-----------------------HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTF 184 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChh-----------------------hhcchhHHHHHHhhhcchhcccchhhhhhccccc
Confidence 88888776 7777777776654 222222 356778889999999887766655677
Q ss_pred hcccccccccccCCCC-----Ccccc--CCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCC
Q 003936 225 FKLQFLESIRIHRCPN-----LQFLE--MPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFE 297 (785)
Q Consensus 225 ~~l~~L~~L~l~~~~~-----L~~L~--l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 297 (785)
..+..++.+.+...+- |+.+. +..+. ..++.+.......+.+... .
T Consensus 185 ~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~--------------------------ietsgarc~~p~rl~~~Ri-~ 237 (498)
T KOG4237|consen 185 QGLAAIKTLHLAQNPFICDCNLPWLADDLAMNP--------------------------IETSGARCVSPYRLYYKRI-N 237 (498)
T ss_pred cchhccchHhhhcCccccccccchhhhHHhhch--------------------------hhcccceecchHHHHHHHh-c
Confidence 7788888777766542 21110 00000 0111111111111110000 0
Q ss_pred CCC-ccccC-ccccc-eeeccCcccccCCc-cccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCC
Q 003936 298 RLP-DELGN-LQALN-RLIIDGTAIRELPE-GLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEI 373 (785)
Q Consensus 298 ~lp-~~l~~-l~~L~-~L~L~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l 373 (785)
.+. ..|.. ...+. .+....+.....|. .|..+++|+.|++++|.+.+.-+.+|..+..+++|.+..|+
T Consensus 238 q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-------- 309 (498)
T KOG4237|consen 238 QEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-------- 309 (498)
T ss_pred ccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch--------
Confidence 000 00000 00010 00111111122232 25666666667777666666666666666666666666653
Q ss_pred ceeccCCCCCcccCccccccCCCCCCccCC-ccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc-----
Q 003936 374 PFCNIDGSGIERIPSSVLKLNKCSKLESLP-SSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR----- 447 (785)
Q Consensus 374 ~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~----- 447 (785)
++.+. ..|.++..|+.|++.+|++....|.+|..+.+|.+|.+-+|.+-
T Consensus 310 -------------------------l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l 364 (498)
T KOG4237|consen 310 -------------------------LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRL 364 (498)
T ss_pred -------------------------HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccch
Confidence 11111 23556677777888888777777777777777887777766553
Q ss_pred -ccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcc---cCCCccc---------ccccc-ceEEecC
Q 003936 448 -EVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFM---RLPDEIG---------NLEYL-KVLTIKG 513 (785)
Q Consensus 448 -~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~---~~~~~~~---------~l~~L-~~L~L~~ 513 (785)
-+-+++..- ...+..|- ..-..++.+.+++..+.. ..|+..+ ..+-+ ++..-++
T Consensus 365 ~wl~~Wlr~~----------~~~~~~~C--q~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSn 432 (498)
T KOG4237|consen 365 AWLGEWLRKK----------SVVGNPRC--QSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSN 432 (498)
T ss_pred HHHHHHHhhC----------CCCCCCCC--CCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcc
Confidence 111222111 00000000 000223333333322211 1111111 11111 1223344
Q ss_pred eeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCC-CcCcCCCCCCEEeCCCC
Q 003936 514 TAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIP-ERLDPLSSLKYLDLFEN 583 (785)
Q Consensus 514 n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n 583 (785)
..++.+|..+ ...-.+|++.+|.++.+|.. .+.+| .+|+++|++..+. ..+.++++|.+|.|++|
T Consensus 433 k~lk~lp~~i--P~d~telyl~gn~~~~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 433 KLLKLLPRGI--PVDVTELYLDGNAITSVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred cchhhcCCCC--CchhHHHhcccchhcccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 4445555422 23456777888888887766 56677 7888888877763 34677777877777765
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=1e-17 Score=190.82 Aligned_cols=231 Identities=25% Similarity=0.396 Sum_probs=180.0
Q ss_pred cccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCccc
Q 003936 307 QALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERI 386 (785)
Q Consensus 307 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~l 386 (785)
.+...|+++++.++.+|..+ .+.|+.|++++|.+. .+|..+. .+|+.|++++|.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~--------------------- 231 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQ--------------------- 231 (754)
T ss_pred cCceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCc---------------------
Confidence 35678999999999999765 358999999998755 5665543 578888888763
Q ss_pred CccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccC
Q 003936 387 PSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKC 466 (785)
Q Consensus 387 p~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~ 466 (785)
+..+|..+ .++|+.|++++|.+. .+|..+. .+|+.|++++|.++.+|..+.. .|+.|++++|
T Consensus 232 ------------LtsLP~~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~~-sL~~L~Ls~N 293 (754)
T PRK15370 232 ------------LTSIPATL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISCLPENLPE-ELRYLSVYDN 293 (754)
T ss_pred ------------cccCChhh--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCccccccCC-CCcEEECCCC
Confidence 22334333 247999999999865 6676553 5799999999999998876542 5899999988
Q ss_pred CCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccc
Q 003936 467 SSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESL 546 (785)
Q Consensus 467 ~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l 546 (785)
. +..+|..+. ++|+.|++++|.+.. +|..+ .++|+.|++++|.++.+|..+. ++|+.|++++|+++.+|..+
T Consensus 294 ~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l 365 (754)
T PRK15370 294 S-IRTLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL 365 (754)
T ss_pred c-cccCcccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh
Confidence 5 445665543 579999999998764 45433 3689999999999999987653 79999999999999888766
Q ss_pred cCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCCCCccccc
Q 003936 547 NQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPEYLR 593 (785)
Q Consensus 547 ~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~lp~~~~ 593 (785)
. ++|+.|+|++|+++.+|+.+. .+|+.|++++|+|+.+|+.+.
T Consensus 366 p--~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~ 408 (754)
T PRK15370 366 P--PTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLP 408 (754)
T ss_pred c--CCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHH
Confidence 3 689999999999999988764 379999999999999887643
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=2.1e-18 Score=151.74 Aligned_cols=161 Identities=27% Similarity=0.444 Sum_probs=142.8
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+...+.|.+++|.+ ..+|..+..+.+|+.|++.+|+|+++|.++..+ ++|+.|
T Consensus 29 Lf~~s~ITrLtLSHNKl-~~vppnia~l~nlevln~~nnqie~lp~~issl-----------------------~klr~l 84 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKL-TVVPPNIAELKNLEVLNLSNNQIEELPTSISSL-----------------------PKLRIL 84 (264)
T ss_pred ccchhhhhhhhcccCce-eecCCcHHHhhhhhhhhcccchhhhcChhhhhc-----------------------hhhhhe
Confidence 34678889999999864 556777889999999999999999999888877 889999
Q ss_pred EeeCCcCcccCCCccccccccceEEecCeecc--ccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCC
Q 003936 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR--EVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLE 563 (785)
Q Consensus 486 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~ 563 (785)
+++-|++ ..+|..|+.++.|+.|||.+|.+. .+|..|..+..|+.|+|++|.+.-+|..++++++|+.|.+..|.+-
T Consensus 85 nvgmnrl-~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll 163 (264)
T KOG0617|consen 85 NVGMNRL-NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL 163 (264)
T ss_pred ecchhhh-hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh
Confidence 9887764 467889999999999999999887 5799899999999999999999999999999999999999999999
Q ss_pred CCCCcCcCCCCCCEEeCCCCCCCCCccc
Q 003936 564 RIPERLDPLSSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 564 ~lp~~l~~l~~L~~L~l~~n~l~~lp~~ 591 (785)
++|..++.++.|+.|++.+|+++.+|+-
T Consensus 164 ~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 164 SLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred hCcHHHHHHHHHHHHhcccceeeecChh
Confidence 9999999999999999999999988644
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=5.4e-17 Score=142.91 Aligned_cols=151 Identities=25% Similarity=0.448 Sum_probs=132.7
Q ss_pred CCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCcccc
Q 003936 398 KLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLY 477 (785)
Q Consensus 398 ~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~ 477 (785)
++..+|..+..+.+|+.|++++|+ .+.+|..++.++.|+.|++.-|++..+|..++.+
T Consensus 44 Kl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnrl~~lprgfgs~--------------------- 101 (264)
T KOG0617|consen 44 KLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNRLNILPRGFGSF--------------------- 101 (264)
T ss_pred ceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhhhhcCccccCCC---------------------
Confidence 455677778889999999999986 4668888999999999999988887777666655
Q ss_pred CCCCCCEEEeeCCcCcc-cCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEE
Q 003936 478 VSKSLTSLEIIDCKNFM-RLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLK 556 (785)
Q Consensus 478 ~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 556 (785)
+.|+.||+.+|.+.. .+|..|-.+..|+.|+|++|.+.-+|..++.+++|+.|.+.+|.+.++|..++.++.|++|.
T Consensus 102 --p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 102 --PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH 179 (264)
T ss_pred --chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh
Confidence 888888888888754 67888889999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcCcCC
Q 003936 557 LSNNNLERIPERLDPL 572 (785)
Q Consensus 557 L~~n~l~~lp~~l~~l 572 (785)
+.+|+++-+|+.++++
T Consensus 180 iqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 180 IQGNRLTVLPPELANL 195 (264)
T ss_pred cccceeeecChhhhhh
Confidence 9999999999876654
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.50 E-value=7.9e-16 Score=163.37 Aligned_cols=84 Identities=17% Similarity=0.128 Sum_probs=39.6
Q ss_pred CCCCCcEEecccCCCC----CCCCccccCccccceeeccCccccc-------CCccccCccccceecccCccCCcccccc
Q 003936 281 MFKSLTSLEIIDCPNF----ERLPDELGNLQALNRLIIDGTAIRE-------LPEGLGQLALLSKLELKNCSELEYISSS 349 (785)
Q Consensus 281 ~l~~L~~L~l~~~~~~----~~lp~~l~~l~~L~~L~L~~n~i~~-------lp~~l~~l~~L~~L~l~~~~~~~~~~~~ 349 (785)
.+.+|+.|.+.++... ..++..+...+.+++++++++.+.. ++..+..+++|++|++++|.+....+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 3445666666655432 1233344455556666665554442 1122344555555555555554433333
Q ss_pred ccCCCC---CCEEEeeCC
Q 003936 350 IFKLKS---VESIEISNC 364 (785)
Q Consensus 350 ~~~l~~---L~~L~l~~~ 364 (785)
+..+.+ |++|++++|
T Consensus 101 ~~~l~~~~~L~~L~ls~~ 118 (319)
T cd00116 101 LESLLRSSSLQELKLNNN 118 (319)
T ss_pred HHHHhccCcccEEEeeCC
Confidence 333322 555555554
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=2.8e-15 Score=159.13 Aligned_cols=239 Identities=25% Similarity=0.265 Sum_probs=137.2
Q ss_pred CccccCccccceeeccCcccc-----cCCccccCccccceecccCccCC------ccccccccCCCCCCEEEeeCCCCCC
Q 003936 300 PDELGNLQALNRLIIDGTAIR-----ELPEGLGQLALLSKLELKNCSEL------EYISSSIFKLKSVESIEISNCSNLK 368 (785)
Q Consensus 300 p~~l~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~l~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~l~ 368 (785)
...+..+.+|+.|+++++.++ .++..+...++|++++++++... ..++..+..+++|+.|++++|..-.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 344555666888888887774 34445566667777777776554 1233445556677777776664211
Q ss_pred CCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCC---CCCcEEEeccccCCC----cCCcccCCc-ccchhhh
Q 003936 369 GFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMF---KSLTSLEIIDCKKLE----RLPDELGNL-EALEELR 440 (785)
Q Consensus 369 ~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l---~~L~~L~l~~~~~~~----~~p~~~~~l-~~L~~L~ 440 (785)
..+..+..+ ++|+.|++++|.+.+ .+...+..+ ++|+.|+
T Consensus 96 --------------------------------~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~ 143 (319)
T cd00116 96 --------------------------------DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLV 143 (319)
T ss_pred --------------------------------hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEE
Confidence 011111122 347777777766542 122233444 5666666
Q ss_pred ccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCccc----CCCccccccccceEEecCeec
Q 003936 441 VEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMR----LPDEIGNLEYLKVLTIKGTAI 516 (785)
Q Consensus 441 L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l 516 (785)
+++|.++.-.. ..++..+..+++|++|++++|.+.+. ++..+...++|+.|++++|.+
T Consensus 144 L~~n~l~~~~~------------------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 144 LGRNRLEGASC------------------EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred cCCCcCCchHH------------------HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 66666652100 00111222336777777777776532 233344456778888887776
Q ss_pred c-----ccCcccCCCCCCcEEEccCCcccc-----ccccc-cCCCCCCEEEcccCCCCC-----CCCcCcCCCCCCEEeC
Q 003936 517 R-----EVPESLGQLSSLEWLVLSDNNLQI-----IPESL-NQLSSLVSLKLSNNNLER-----IPERLDPLSSLKYLDL 580 (785)
Q Consensus 517 ~-----~lp~~~~~l~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l 580 (785)
+ .++..+..+++|++|++++|.++. +...+ ...+.|+.|++++|.++. ++..+..+++|+++++
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l 285 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDL 285 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEEC
Confidence 5 234456667788888888887764 11111 124678888888887751 3444555678888888
Q ss_pred CCCCCCCC
Q 003936 581 FENNLDRI 588 (785)
Q Consensus 581 ~~n~l~~l 588 (785)
++|++..-
T Consensus 286 ~~N~l~~~ 293 (319)
T cd00116 286 RGNKFGEE 293 (319)
T ss_pred CCCCCcHH
Confidence 88876643
No 23
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.22 E-value=3.9e-12 Score=122.44 Aligned_cols=136 Identities=25% Similarity=0.350 Sum_probs=117.9
Q ss_pred cCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceE
Q 003936 430 LGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVL 509 (785)
Q Consensus 430 ~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 509 (785)
+...+.|+++||++|.|+.+.+++... +.++.|++++|.+...- .+..+++|+.|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~-----------------------Pkir~L~lS~N~i~~v~--nLa~L~~L~~L 334 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLA-----------------------PKLRRLILSQNRIRTVQ--NLAELPQLQLL 334 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhc-----------------------cceeEEeccccceeeeh--hhhhcccceEe
Confidence 445678999999999999999888877 89999999999987543 37788999999
Q ss_pred EecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCC--CCcCcCCCCCCEEeCCCCCCCC
Q 003936 510 TIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI--PERLDPLSSLKYLDLFENNLDR 587 (785)
Q Consensus 510 ~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~l~~n~l~~ 587 (785)
||++|.++++..+-..+-+.+.|.|+.|.+..+ .+++.+-+|..||+++|++..+ -..+++++-|+.+.+.+|++..
T Consensus 335 DLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 335 DLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred ecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 999999999887777888999999999998776 3578889999999999999876 4568999999999999999998
Q ss_pred Cccc
Q 003936 588 IPEY 591 (785)
Q Consensus 588 lp~~ 591 (785)
+|+.
T Consensus 414 ~vdY 417 (490)
T KOG1259|consen 414 SVDY 417 (490)
T ss_pred cchH
Confidence 8875
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=1.2e-12 Score=136.67 Aligned_cols=166 Identities=33% Similarity=0.508 Sum_probs=121.5
Q ss_pred ccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCC
Q 003936 400 ESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVS 479 (785)
Q Consensus 400 ~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~ 479 (785)
..+|..++.+..|+.+.+..|. ...+|..+.++..|..|+++.|++..+|..+..+.
T Consensus 88 ~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp---------------------- 144 (722)
T KOG0532|consen 88 SELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP---------------------- 144 (722)
T ss_pred ccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccchhhcCChhhhcCc----------------------
Confidence 3455566667777777777765 35567778888888888888888888887777664
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEccc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSN 559 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 559 (785)
|+.|-+++|++ +.+|+.++.+..|..|+.+.|.+..+|..++++.+|+.|.++.|++..+|+.+..| .|..||+++
T Consensus 145 --Lkvli~sNNkl-~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 145 --LKVLIVSNNKL-TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred --ceeEEEecCcc-ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeeccc
Confidence 55555555553 34566666777777777777777777777777888888888888887777777644 577788888
Q ss_pred CCCCCCCCcCcCCCCCCEEeCCCCCCCCCcccc
Q 003936 560 NNLERIPERLDPLSSLKYLDLFENNLDRIPEYL 592 (785)
Q Consensus 560 n~l~~lp~~l~~l~~L~~L~l~~n~l~~lp~~~ 592 (785)
|++..||.++..+..|++|-|.+|+|++=|..+
T Consensus 221 Nkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 221 NKISYLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred CceeecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 888888888888888888888888887776554
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.18 E-value=3.5e-11 Score=140.00 Aligned_cols=319 Identities=20% Similarity=0.229 Sum_probs=175.8
Q ss_pred cCCCCCCCceEEEEecCCCCccccc-ccccCceEEEcCCCC--ccccccc-ccCCCCCcEEecCCCccccCCC-CCcccc
Q 003936 37 SLEGVPFTELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSK--VTQLWDD-VQNLVSLKRIDLKYSKLLTKLP-DLSLAQ 111 (785)
Q Consensus 37 ~~~~~~~~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~--i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~ 111 (785)
.|+...+...|...+.++.+..++. ...+.|+.|-+..|. +..++.+ |..++.|++|||++|.-...+| .++.+-
T Consensus 516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li 595 (889)
T KOG4658|consen 516 IPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV 595 (889)
T ss_pred cccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence 4454444778888888888888877 666688888888886 5556544 7788888888888887777788 478888
Q ss_pred ccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccc--ccccccccc
Q 003936 112 NLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTS--CHLRSTLPL 188 (785)
Q Consensus 112 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~--~~L~~~L~l 188 (785)
+||+|++++.. +..+|..+++|++|.+|++..+.....+|... .+.+|++|.+..-..-.. ..... .+|+ .|..
T Consensus 596 ~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~-~~~l~el~~Le-~L~~ 672 (889)
T KOG4658|consen 596 HLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSND-KLLLKELENLE-HLEN 672 (889)
T ss_pred hhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccc-hhhHHhhhccc-chhh
Confidence 88888888865 56888888888888888888877777776666 588888888865420000 00000 1222 2222
Q ss_pred cccccccc--Ccchhcccccc----ceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCcc--C-
Q 003936 189 LGVGIEEL--PSSIKCLSNIG----ELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKE--Q- 259 (785)
Q Consensus 189 ~~~~i~~l--p~~l~~l~~L~----~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~--~- 259 (785)
-.+.+... -..+..++.|. .+.+.+ ......+..+..+.+|+.|.+.+|...+..--... ..... +
T Consensus 673 ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~----~~~~~~~f~ 747 (889)
T KOG4658|consen 673 LSITISSVLLLEDLLGMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEE----SLIVLLCFP 747 (889)
T ss_pred heeecchhHhHhhhhhhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhccccc----ccchhhhHH
Confidence 22221111 11112222222 222222 22233344556666666666666644321100000 00000 0
Q ss_pred CcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCC--ccccCccccceecc
Q 003936 260 PSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELP--EGLGQLALLSKLEL 337 (785)
Q Consensus 260 ~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~~L~l 337 (785)
....+.+..|.... .+.|....++|+.|.+..|...+.+.+....+..++.+.+..+.+..++ .+.+.++++..+.+
T Consensus 748 ~l~~~~~~~~~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l 826 (889)
T KOG4658|consen 748 NLSKVSILNCHMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL 826 (889)
T ss_pred HHHHHHhhcccccc-ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc
Confidence 00001111221111 1223334678888888888888766666666666655444443333221 11233333333332
Q ss_pred cCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceecc
Q 003936 338 KNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNI 378 (785)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l 378 (785)
.. +.|+.+.+..|+++..+|.+..+.+
T Consensus 827 ~~--------------~~l~~~~ve~~p~l~~~P~~~~~~i 853 (889)
T KOG4658|consen 827 SF--------------LKLEELIVEECPKLGKLPLLSTLTI 853 (889)
T ss_pred Cc--------------cchhheehhcCcccccCccccccce
Confidence 22 2377777777776666665444433
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.15 E-value=7.3e-11 Score=137.37 Aligned_cols=140 Identities=22% Similarity=0.291 Sum_probs=112.6
Q ss_pred cCCCCccccc-ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCcc-ccCCCC--CccccccceeccccccCcccc
Q 003936 52 HQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKL-LTKLPD--LSLAQNLEILDLGYCSSLTET 127 (785)
Q Consensus 52 ~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~-~~~~~~--l~~l~~L~~L~Ls~n~~~~~~ 127 (785)
.+......|. ......+...+.+|.+..++.... .++|++|-+.+|.. ...++. |..++.|++|||++|...+.+
T Consensus 509 ~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~L 587 (889)
T KOG4658|consen 509 DGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKL 587 (889)
T ss_pred CCcCccccccccchhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcC
Confidence 3455556777 777889999999999988876544 34899999999963 444443 889999999999999999999
Q ss_pred ccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhccccc
Q 003936 128 HSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNI 206 (785)
Q Consensus 128 ~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L 206 (785)
|+.++.|-+||+|++++ ..+..+|..+ ++..|.+|++..+..+..+| .....+.+|
T Consensus 588 P~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~----------------------~i~~~L~~L 644 (889)
T KOG4658|consen 588 PSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIP----------------------GILLELQSL 644 (889)
T ss_pred ChHHhhhhhhhcccccC-CCccccchHHHHHHhhheecccccccccccc----------------------chhhhcccc
Confidence 99999999999999999 5678999999 89999999999876554432 334457788
Q ss_pred cceeccccc
Q 003936 207 GELLIYSCK 215 (785)
Q Consensus 207 ~~L~L~~~~ 215 (785)
++|.+....
T Consensus 645 r~L~l~~s~ 653 (889)
T KOG4658|consen 645 RVLRLPRSA 653 (889)
T ss_pred cEEEeeccc
Confidence 888877654
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.07 E-value=1.4e-11 Score=128.79 Aligned_cols=192 Identities=27% Similarity=0.417 Sum_probs=120.2
Q ss_pred cceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCc
Q 003936 309 LNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPS 388 (785)
Q Consensus 309 L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~ 388 (785)
-...|++.|++.++|..+..+..|+.+.++.|. ...+|..+.++..|..++++.|.
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq----------------------- 132 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ----------------------- 132 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch-----------------------
Confidence 455677777777777777777777777777644 44556666666666666666653
Q ss_pred cccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCC
Q 003936 389 SVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSS 468 (785)
Q Consensus 389 ~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~ 468 (785)
+..+|..++.++ |+.|-+++|+ ++.+|+.++....|..|+.+.|.+..+|+.+..
T Consensus 133 ----------lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~------------- 187 (722)
T KOG0532|consen 133 ----------LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGY------------- 187 (722)
T ss_pred ----------hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhh-------------
Confidence 334455555443 6666666654 455666666666666777766666666654444
Q ss_pred CccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccC
Q 003936 469 FESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQ 548 (785)
Q Consensus 469 ~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~ 548 (785)
+.+|+.|.+..|.+..+|+.+. .-.|..||+|.|++..||-.|.+
T Consensus 188 ----------------------------------l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~ 232 (722)
T KOG0532|consen 188 ----------------------------------LTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRK 232 (722)
T ss_pred ----------------------------------HHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhh
Confidence 4455555555555666665555 23466777777777777777777
Q ss_pred CCCCCEEEcccCCCCCCCCcC---cCCCCCCEEeCCCCC
Q 003936 549 LSSLVSLKLSNNNLERIPERL---DPLSSLKYLDLFENN 584 (785)
Q Consensus 549 l~~L~~L~L~~n~l~~lp~~l---~~l~~L~~L~l~~n~ 584 (785)
|..|++|-|.+|.+++-|..+ +...--++|+..-|+
T Consensus 233 m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 233 MRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence 777777777777777666543 233345666666663
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=3.4e-11 Score=122.37 Aligned_cols=110 Identities=17% Similarity=0.172 Sum_probs=62.8
Q ss_pred cCccccceeeccCcccccCCc--cccCccccceecccCccCCcc--ccccccCCCCCCEEEeeCCCCCCCCCCCceeccC
Q 003936 304 GNLQALNRLIIDGTAIRELPE--GLGQLALLSKLELKNCSELEY--ISSSIFKLKSVESIEISNCSNLKGFPEIPFCNID 379 (785)
Q Consensus 304 ~~l~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~ 379 (785)
.++.+|+.+.|+++.+...+. ....+++++.|+++.|-+... +-.....+++|+.|.++.|.......+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s------- 190 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISS------- 190 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccc-------
Confidence 346677777777777765553 456677777777777654432 122334566777776666642111100
Q ss_pred CCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCc-CCcccCCcccchhhhccCc
Q 003936 380 GSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLER-LPDELGNLEALEELRVEGT 444 (785)
Q Consensus 380 ~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~L~~n 444 (785)
..-..+++|+.|.++.|.+... +......+|+|+.|++.+|
T Consensus 191 ------------------------~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 191 ------------------------NTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred ------------------------cchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 0011456788888888876531 2223345666677776666
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=4.6e-10 Score=122.67 Aligned_cols=153 Identities=37% Similarity=0.494 Sum_probs=110.6
Q ss_pred CCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCC
Q 003936 411 SLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDC 490 (785)
Q Consensus 411 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~ 490 (785)
+|+.|++++|.+. .+|..++.+++|+.|++++|+++++|...... ++|+.|++++|
T Consensus 141 nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-----------------------~~L~~L~ls~N 196 (394)
T COG4886 141 NLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNL-----------------------SNLNNLDLSGN 196 (394)
T ss_pred hcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhh-----------------------hhhhheeccCC
Confidence 6777777776543 33345666777777777777777777655333 66777777776
Q ss_pred cCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCc
Q 003936 491 KNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLD 570 (785)
Q Consensus 491 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~ 570 (785)
++.. +|........|++|.+++|.+..++..+..+..+..+.+.+|++..++..++.+++++.|++++|.++.++. +.
T Consensus 197 ~i~~-l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~ 274 (394)
T COG4886 197 KISD-LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LG 274 (394)
T ss_pred cccc-CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-cc
Confidence 6543 333334455577788888766666777788888888888888888878888888889999999998888876 88
Q ss_pred CCCCCCEEeCCCCCCCCCc
Q 003936 571 PLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 571 ~l~~L~~L~l~~n~l~~lp 589 (785)
.+.+|+.|++++|.+..++
T Consensus 275 ~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 275 SLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccCccCEEeccCccccccc
Confidence 8888999999998865544
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=1.7e-10 Score=107.59 Aligned_cols=103 Identities=22% Similarity=0.275 Sum_probs=24.4
Q ss_pred CceEEEEecCCCCccccc-c-cccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCC-ccccccceecccc
Q 003936 44 TELRYFEWHQFPLKTLNI-L-HWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDL-SLAQNLEILDLGY 120 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-~-~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l-~~l~~L~~L~Ls~ 120 (785)
.++|.|+|++|.++.+.. . .+.+|+.|++++|.|+.+ +++..+++|++|++++|++....+.+ ..+++|++|++++
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC
Confidence 344555555555555544 2 345555555555555554 23445555555555555433322222 2345555555555
Q ss_pred ccCcc-ccccccccCCcccEEecCCCCC
Q 003936 121 CSSLT-ETHSSIQYLNKLEVLDLDRCKS 147 (785)
Q Consensus 121 n~~~~-~~~~~l~~l~~L~~L~L~~~~~ 147 (785)
|.+.. ..-..+..+++|++|+|.+|+.
T Consensus 98 N~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 98 NKISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp S---SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CcCCChHHhHHHHcCCCcceeeccCCcc
Confidence 54322 1113344555555555555543
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.99 E-value=3.2e-10 Score=123.98 Aligned_cols=142 Identities=30% Similarity=0.458 Sum_probs=105.4
Q ss_pred ccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCC
Q 003936 404 SSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLT 483 (785)
Q Consensus 404 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~ 483 (785)
..+..++.|+.|++++|++.. +|...+..+.|+.|++++|.++.+|..+... ..|+
T Consensus 157 ~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~-----------------------~~L~ 212 (394)
T COG4886 157 SPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLDLSGNKISDLPPEIELL-----------------------SALE 212 (394)
T ss_pred hhhhccccccccccCCchhhh-hhhhhhhhhhhhheeccCCccccCchhhhhh-----------------------hhhh
Confidence 345566777777777776433 3333446788888888888888888766444 4466
Q ss_pred EEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCC
Q 003936 484 SLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLE 563 (785)
Q Consensus 484 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~ 563 (785)
+|.+++|.. ...+..+.++.++..+.+.+|++..++..++.++++++|++++|.++.++. ++.+.+|+.|++++|.+.
T Consensus 213 ~l~~~~N~~-~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~ 290 (394)
T COG4886 213 ELDLSNNSI-IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLS 290 (394)
T ss_pred hhhhcCCcc-eecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEeccCcccc
Confidence 666666642 234445677778888888888888888888899999999999999999887 889999999999999988
Q ss_pred CCCCcCcC
Q 003936 564 RIPERLDP 571 (785)
Q Consensus 564 ~lp~~l~~ 571 (785)
.++.....
T Consensus 291 ~~~~~~~~ 298 (394)
T COG4886 291 NALPLIAL 298 (394)
T ss_pred ccchhhhc
Confidence 76544333
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=4e-10 Score=105.12 Aligned_cols=126 Identities=21% Similarity=0.258 Sum_probs=54.4
Q ss_pred HhcccccceeeeecCCCccccccCCCCC-C-CceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccccc-cCCCCC
Q 003936 15 FSKMTELRLLKFCGSKNKCMVHSLEGVP-F-TELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDV-QNLVSL 90 (785)
Q Consensus 15 f~~l~~Lr~L~l~~~~~~~~~~~~~~~~-~-~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~-~~l~~L 90 (785)
+-+..++|.|++.+|.+. .+ +.+. . .+|+.|++++|.++.++. ..+++|++|++++|+|+.+.+++ ..+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~---~I-e~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS---TI-ENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccccc---cc-cchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 345567899999999873 33 4555 3 799999999999999999 89999999999999999997665 469999
Q ss_pred cEEecCCCccccC--CCCCccccccceeccccccCcccc---ccccccCCcccEEecCC
Q 003936 91 KRIDLKYSKLLTK--LPDLSLAQNLEILDLGYCSSLTET---HSSIQYLNKLEVLDLDR 144 (785)
Q Consensus 91 ~~L~Ls~n~~~~~--~~~l~~l~~L~~L~Ls~n~~~~~~---~~~l~~l~~L~~L~L~~ 144 (785)
+.|+|++|++... +..+..+++|++|+|.+|++...- ...+..+++|+.||-..
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 9999999986443 224788999999999999865421 12367788888887554
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.9e-10 Score=115.68 Aligned_cols=180 Identities=21% Similarity=0.225 Sum_probs=89.8
Q ss_pred ccCCCCCcEEEeccccCCCc--CCcccCCcccchhhhccCccccccChhhhh--h-hhcccccccCCCCc-cCCccccCC
Q 003936 406 LCMFKSLTSLEIIDCKKLER--LPDELGNLEALEELRVEGTGIREVPKSLAQ--L-ALSKLKLKKCSSFE-SLPSRLYVS 479 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~--l-~L~~L~l~~~~~~~-~lp~~~~~~ 479 (785)
...+++++.|+++.|-+..- +-.....+++|+.|+++.|.+....++... + .++.|.+++|.... .+-.....+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 45678888888888754432 223456778888888888887744433221 1 14444444444331 122222233
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC--cccCCCCCCcEEEccCCcccc--cccc-----ccCCC
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP--ESLGQLSSLEWLVLSDNNLQI--IPES-----LNQLS 550 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~Ls~n~l~~--lp~~-----l~~l~ 550 (785)
++|+.|++..|............+..|++|+|++|.+-..+ ...+.++.|+.|+++.|.+.+ +|+. ...++
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~ 301 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFP 301 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccc
Confidence 55555555555432222223333445555555555554443 334455555555555555543 2322 23445
Q ss_pred CCCEEEcccCCCCCCCC--cCcCCCCCCEEeCCCCCC
Q 003936 551 SLVSLKLSNNNLERIPE--RLDPLSSLKYLDLFENNL 585 (785)
Q Consensus 551 ~L~~L~L~~n~l~~lp~--~l~~l~~L~~L~l~~n~l 585 (785)
+|+.|++..|++..++. .+..+.+|+.|.+..|++
T Consensus 302 kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 302 KLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 55555555555544332 233344445554444443
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.85 E-value=5e-10 Score=108.15 Aligned_cols=125 Identities=23% Similarity=0.205 Sum_probs=95.3
Q ss_pred cccceeeeecCCCccccccCCCCCC-CceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccccccCCCCCcEEecC
Q 003936 19 TELRLLKFCGSKNKCMVHSLEGVPF-TELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLK 96 (785)
Q Consensus 19 ~~Lr~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls 96 (785)
+.|.+|++++|.+ ..+.+.+.. +++|.|++++|.+..+.. ..+.+|++|||++|.++.+-..-.++.+.+.|.|+
T Consensus 284 q~LtelDLS~N~I---~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLI---TQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccch---hhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 4567788888887 556667776 888888888888888877 88888888888888888775556678888888888
Q ss_pred CCccccCCCCCccccccceeccccccCcc-ccccccccCCcccEEecCCCCC
Q 003936 97 YSKLLTKLPDLSLAQNLEILDLGYCSSLT-ETHSSIQYLNKLEVLDLDRCKS 147 (785)
Q Consensus 97 ~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~~~~ 147 (785)
+|. +..+..++.+.+|..||+++|++.. .--..+++++.|+++.|.+|+.
T Consensus 361 ~N~-iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 361 QNK-IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhh-HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 885 4556677888888888888887543 2234678888888888887653
No 35
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.84 E-value=1.5e-10 Score=114.65 Aligned_cols=108 Identities=21% Similarity=0.281 Sum_probs=76.6
Q ss_pred CCCCCCEEEeeCCcCccc----CCCccccccccceEEecCeeccc-----cCcccCCCCCCcEEEccCCcccc-----cc
Q 003936 478 VSKSLTSLEIIDCKNFMR----LPDEIGNLEYLKVLTIKGTAIRE-----VPESLGQLSSLEWLVLSDNNLQI-----IP 543 (785)
Q Consensus 478 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-----lp 543 (785)
..+.|+.+.+..|.+... +...+..+++|++|||.+|.++. +...+..+++|++|++++|.+.. +-
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~ 262 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFV 262 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHH
Confidence 346788888888776432 23456778888888888888772 34556778888888888888763 22
Q ss_pred ccc-cCCCCCCEEEcccCCCCC-----CCCcCcCCCCCCEEeCCCCCC
Q 003936 544 ESL-NQLSSLVSLKLSNNNLER-----IPERLDPLSSLKYLDLFENNL 585 (785)
Q Consensus 544 ~~l-~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l 585 (785)
..+ ...++|+.|.+.+|.++. +-.++...+.|+.|+|++|.+
T Consensus 263 ~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 263 DALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 333 346888888888888863 344456678888888888887
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.65 E-value=3.2e-08 Score=113.22 Aligned_cols=103 Identities=34% Similarity=0.482 Sum_probs=70.2
Q ss_pred CCEEEeeCCcCcccCCCccccccccceEEecCeecc-ccCcccCCCCCCcEEEccCCcccc-ccccccCCCCCCEEEccc
Q 003936 482 LTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQI-IPESLNQLSSLVSLKLSN 559 (785)
Q Consensus 482 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~ 559 (785)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|++++ +|..++.+++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566777777777777777777777777777777765 556667777777777777777764 666677777777777777
Q ss_pred CCCCC-CCCcCcCC-CCCCEEeCCCCC
Q 003936 560 NNLER-IPERLDPL-SSLKYLDLFENN 584 (785)
Q Consensus 560 n~l~~-lp~~l~~l-~~L~~L~l~~n~ 584 (785)
|+++. +|..+... .++..+++.+|+
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 77764 56665442 355666666665
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.65 E-value=2.7e-09 Score=105.86 Aligned_cols=174 Identities=22% Similarity=0.218 Sum_probs=121.2
Q ss_pred ccccCCCCCcEEEeccccCCCcCCcc----cCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCC
Q 003936 404 SSLCMFKSLTSLEIIDCKKLERLPDE----LGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVS 479 (785)
Q Consensus 404 ~~~~~l~~L~~L~l~~~~~~~~~p~~----~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~ 479 (785)
..+...++|+.|+||+|-+-...+.. +..+..|++|.|.+|.+...-...-.-.|..+. .++.. ..-
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--~~kk~-------~~~ 156 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--VNKKA-------ASK 156 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--HHhcc-------CCC
Confidence 34456678899999998776554443 456788999999999887433222111122222 11111 112
Q ss_pred CCCCEEEeeCCcCccc----CCCccccccccceEEecCeeccc-----cCcccCCCCCCcEEEccCCcccc-----cccc
Q 003936 480 KSLTSLEIIDCKNFMR----LPDEIGNLEYLKVLTIKGTAIRE-----VPESLGQLSSLEWLVLSDNNLQI-----IPES 545 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-----lp~~ 545 (785)
+.|+++...+|..... +...+...+.|+.+.++.|.|.. +...+..+++|+.|||.+|-++. +...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 7899999998886432 33456667899999999988762 24567889999999999998874 5567
Q ss_pred ccCCCCCCEEEcccCCCCC-----CCCcC-cCCCCCCEEeCCCCCCC
Q 003936 546 LNQLSSLVSLKLSNNNLER-----IPERL-DPLSSLKYLDLFENNLD 586 (785)
Q Consensus 546 l~~l~~L~~L~L~~n~l~~-----lp~~l-~~l~~L~~L~l~~n~l~ 586 (785)
+..+++|+.|++++|.+.. +-..+ ...++|+.|.+.+|.++
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 7888999999999998874 22222 34789999999999876
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.62 E-value=2.7e-08 Score=76.09 Aligned_cols=57 Identities=51% Similarity=0.735 Sum_probs=30.4
Q ss_pred CCcEEEccCCccccccc-cccCCCCCCEEEcccCCCCCC-CCcCcCCCCCCEEeCCCCC
Q 003936 528 SLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLERI-PERLDPLSSLKYLDLFENN 584 (785)
Q Consensus 528 ~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l~~n~ 584 (785)
+|++|++++|+++.+|. .|..+++|+.|++++|+++.+ |..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555555542 345555555555555555554 2345555555555555554
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.56 E-value=1.2e-07 Score=108.57 Aligned_cols=110 Identities=21% Similarity=0.294 Sum_probs=89.5
Q ss_pred CceEEEcCCCCcc-cccccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecC
Q 003936 66 NLVSLKMPGSKVT-QLWDDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLD 143 (785)
Q Consensus 66 ~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~ 143 (785)
.++.|+|+++.+. .+|..+..+++|+.|+|++|.+...+| .++.+++|+.|+|++|.+.+.+|+.++++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788888888887 667788889999999999988877777 58888999999999988888888889999999999999
Q ss_pred CCCCCCcCCCcc-c-cccccEEeccCCcCCCCCC
Q 003936 144 RCKSLTSLPTSI-H-SKYLKRLVLRGCSNLKNLP 175 (785)
Q Consensus 144 ~~~~~~~~p~~~-~-l~~L~~L~ls~~~~l~~lp 175 (785)
+|...+.+|..+ . ..++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 888888888877 2 3566778888776554443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.49 E-value=1.7e-07 Score=71.66 Aligned_cols=59 Identities=42% Similarity=0.643 Sum_probs=42.2
Q ss_pred cccceEEecCeeccccC-cccCCCCCCcEEEccCCcccccc-ccccCCCCCCEEEcccCCC
Q 003936 504 EYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSLVSLKLSNNNL 562 (785)
Q Consensus 504 ~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l 562 (785)
++|++|++++|.++.+| ..|.++++|++|++++|+++.++ ..|..+++|+.|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 35667777777777775 46677777777777777777765 4577777777777777764
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.47 E-value=3.7e-08 Score=107.86 Aligned_cols=35 Identities=37% Similarity=0.532 Sum_probs=17.3
Q ss_pred cceEEecCeeccccCcccCCCCCCcEEEccCCccc
Q 003936 506 LKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQ 540 (785)
Q Consensus 506 L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~ 540 (785)
|+.+++++|.+..++..+..+..+..|++.+|++.
T Consensus 234 L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 234 LRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred HHHHhcccCccccccccccccccccccchhhcccc
Confidence 45555555555544433444455555555555444
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.46 E-value=2.6e-07 Score=96.77 Aligned_cols=138 Identities=27% Similarity=0.486 Sum_probs=84.9
Q ss_pred hcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeec---cccCcccCCCCCCcEEEc
Q 003936 458 LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAI---REVPESLGQLSSLEWLVL 534 (785)
Q Consensus 458 L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l---~~lp~~~~~l~~L~~L~L 534 (785)
++.|.+.+|..+..+|..+. ++|+.|++++|.....+|. +|+.|+++++.. ..+|. +|+.|.+
T Consensus 74 LtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~~~L~~LPs------sLk~L~I 139 (426)
T PRK15386 74 LTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVRSLEIKGSATDSIKNVPN------GLTSLSI 139 (426)
T ss_pred CcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccceEEeCCCCCcccccCcc------hHhheec
Confidence 55555666666655555442 6788888888865555553 466777776554 34443 5677777
Q ss_pred cCCc-c--ccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC--CCccccccCCCCCCcccccccce
Q 003936 535 SDNN-L--QIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD--RIPEYLRSFPTSIPSEFTSLRLS 609 (785)
Q Consensus 535 s~n~-l--~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~--~lp~~~~~~~~~ip~~l~~l~~~ 609 (785)
.+++ . ..+|.. -.++|+.|++++|....+|..+. .+|+.|+++.|... .++. ..+|+++ .
T Consensus 140 ~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n~~~sLeI~~------~sLP~nl-~---- 204 (426)
T PRK15386 140 NSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIEQKTTWNISF------EGFPDGL-D---- 204 (426)
T ss_pred cccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEEecccccccccCcc------ccccccc-E----
Confidence 5433 1 112211 12589999999988776665544 58999998877533 2332 1347666 4
Q ss_pred eeeccccccCccchh
Q 003936 610 VDLRNCLKLDPNELS 624 (785)
Q Consensus 610 l~~~~C~~L~~~~~~ 624 (785)
+.+.+|..+....+.
T Consensus 205 L~f~n~lkL~~~~f~ 219 (426)
T PRK15386 205 IDLQNSVLLSPDVFK 219 (426)
T ss_pred echhhhcccCHHHhh
Confidence 777788777665543
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.43 E-value=5e-08 Score=106.79 Aligned_cols=191 Identities=23% Similarity=0.268 Sum_probs=104.7
Q ss_pred cccccceeeeecCCCccccccCCCCCC-CceEEEEecCCCCccccc--ccccCceEEEcCCCCcccccccccCCCCCcEE
Q 003936 17 KMTELRLLKFCGSKNKCMVHSLEGVPF-TELRYFEWHQFPLKTLNI--LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRI 93 (785)
Q Consensus 17 ~l~~Lr~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~--~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L 93 (785)
.+..++.+.+..|.+ ..+...+.. .+|+.|++.+|.+..+.. ..+.+|++|++++|.|+.+ .++..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i---~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLI---AKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhh---hhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhh
Confidence 444555555666554 222232333 677777777777776666 5577777777777777766 346666667777
Q ss_pred ecCCCccccCCCCCccccccceeccccccCccccc-cccccCCcccEEecCCCCCCCcCCCccccccccEEeccCCcCCC
Q 003936 94 DLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETH-SSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLK 172 (785)
Q Consensus 94 ~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~ls~~~~l~ 172 (785)
++++|. +..++.+..+++|+.+++++|.+...-+ . ...+.+++.+.+.+|.. ..+...-.+..+..+++..|. +.
T Consensus 146 ~l~~N~-i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i-~~i~~~~~~~~l~~~~l~~n~-i~ 221 (414)
T KOG0531|consen 146 NLSGNL-ISDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI-REIEGLDLLKKLVLLSLLDNK-IS 221 (414)
T ss_pred eeccCc-chhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch-hcccchHHHHHHHHhhccccc-ce
Confidence 777775 3445566667777777777776444322 1 46666677777766432 222211123333333444432 11
Q ss_pred CCCCccc---cccccccccccccccccCcchhccccccceecccccc
Q 003936 173 NLPKMTS---CHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKR 216 (785)
Q Consensus 173 ~lp~~~~---~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~ 216 (785)
.+..... .+|+ .+++.+|.+..++..+..+..+..|++..+.+
T Consensus 222 ~~~~l~~~~~~~L~-~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 222 KLEGLNELVMLHLR-ELYLSGNRISRSPEGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred eccCcccchhHHHH-HHhcccCccccccccccccccccccchhhccc
Confidence 1111111 1244 66666666665555555555555555555443
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.35 E-value=1.6e-08 Score=109.08 Aligned_cols=115 Identities=31% Similarity=0.254 Sum_probs=84.7
Q ss_pred CccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCC
Q 003936 473 PSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSL 552 (785)
Q Consensus 473 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 552 (785)
...+.-++.|+.|+|++|++.... .+..++.|++|||++|.+..+|..-..-..|+.|.+++|.++++ .++.+|.+|
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~LksL 256 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKSL 256 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhHHhhhhh
Confidence 333444488888899988876543 67788899999999999988875322223489999999988876 356788899
Q ss_pred CEEEcccCCCCCCC--CcCcCCCCCCEEeCCCCCCCCCcc
Q 003936 553 VSLKLSNNNLERIP--ERLDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 553 ~~L~L~~n~l~~lp--~~l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
+.||+++|-|.+.. .-+..+..|+.|+|.+|++-.-|.
T Consensus 257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 99999998776431 125667788899999998766554
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1e-08 Score=99.28 Aligned_cols=192 Identities=19% Similarity=0.238 Sum_probs=103.5
Q ss_pred eEEEEecCCCCccccc--ccccCceEEEcCCCCccc--ccccccCC-CCCcEEecCCCccccCC-C-CCccccccceecc
Q 003936 46 LRYFEWHQFPLKTLNI--LHWENLVSLKMPGSKVTQ--LWDDVQNL-VSLKRIDLKYSKLLTKL-P-DLSLAQNLEILDL 118 (785)
Q Consensus 46 L~~L~l~~~~l~~lp~--~~l~~L~~L~L~~~~i~~--l~~~~~~l-~~L~~L~Ls~n~~~~~~-~-~l~~l~~L~~L~L 118 (785)
=+.+|+.+-++....- ---..+.++.+....+.+ +.+-+.-+ ..|++|||+...+.... - -++.+.+|+.|.|
T Consensus 138 W~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSl 217 (419)
T KOG2120|consen 138 WQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSL 217 (419)
T ss_pred eeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccc
Confidence 3456666655542111 112345555555443331 21222222 35777888776543221 1 2567778888888
Q ss_pred ccccCccccccccccCCcccEEecCCCCCCCcCCCcc---ccccccEEeccCCcCCCCCCCcc----ccccccccccccc
Q 003936 119 GYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI---HSKYLKRLVLRGCSNLKNLPKMT----SCHLRSTLPLLGV 191 (785)
Q Consensus 119 s~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~---~l~~L~~L~ls~~~~l~~lp~~~----~~~L~~~L~l~~~ 191 (785)
.+++....+...+++-.+|+.|+|+.|+..++..... .++.|++|++++|...+..-... ...++ .|+++|+
T Consensus 218 Eg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~-~LNlsG~ 296 (419)
T KOG2120|consen 218 EGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLT-QLNLSGY 296 (419)
T ss_pred cccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhh-hhhhhhh
Confidence 8877766677777788888888888877776554433 67788888888886544331111 13444 4555543
Q ss_pred cc----cccCcchhccccccceecccccccc-ccchhhhcccccccccccCC
Q 003936 192 GI----EELPSSIKCLSNIGELLIYSCKRLE-NISSSIFKLQFLESIRIHRC 238 (785)
Q Consensus 192 ~i----~~lp~~l~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l~~~ 238 (785)
.- ..+..-...+++|.+|||++|.... .....+.+++.|++|.++.|
T Consensus 297 rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 297 RRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred HhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhh
Confidence 31 1111122345666666666554332 22334445555555555555
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.24 E-value=6.5e-08 Score=98.36 Aligned_cols=276 Identities=24% Similarity=0.302 Sum_probs=147.7
Q ss_pred CCCcEEecCCCccccCCC--C-CccccccceeccccccCccc--cccccccCCcccEEecCCCCCCCcCCCc-c--cccc
Q 003936 88 VSLKRIDLKYSKLLTKLP--D-LSLAQNLEILDLGYCSSLTE--THSSIQYLNKLEVLDLDRCKSLTSLPTS-I--HSKY 159 (785)
Q Consensus 88 ~~L~~L~Ls~n~~~~~~~--~-l~~l~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~L~~~~~~~~~p~~-~--~l~~ 159 (785)
..||.|.+.+++-...-+ . ...++++++|++.+|..+.. .-..-..+++|++|++..|..++...-. + ++++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 468888888886544433 2 46788888888888874432 1122346788888888888777754322 2 7888
Q ss_pred ccEEeccCCcCCCCCC--Ccc-c-ccccccccccccccccc---Ccchhccccccceeccccccccccc--hhhhccccc
Q 003936 160 LKRLVLRGCSNLKNLP--KMT-S-CHLRSTLPLLGVGIEEL---PSSIKCLSNIGELLIYSCKRLENIS--SSIFKLQFL 230 (785)
Q Consensus 160 L~~L~ls~~~~l~~lp--~~~-~-~~L~~~L~l~~~~i~~l---p~~l~~l~~L~~L~L~~~~~~~~~~--~~l~~l~~L 230 (785)
|+++++++|+.++.-. ... + ..++ .+.+.|..-.+. -..-+....+..+++..|...+... ..-..+..|
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~-~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELE-KLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhh-hhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 8899999887665410 000 0 1111 222222111000 0011122334444444553333222 111233444
Q ss_pred ccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCC--CccccCccc
Q 003936 231 ESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERL--PDELGNLQA 308 (785)
Q Consensus 231 ~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l--p~~l~~l~~ 308 (785)
+.++.++|..+...- +...-.+..+|+.|.+..|..++.. ...-.+++.
T Consensus 297 q~l~~s~~t~~~d~~-----------------------------l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~ 347 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEV-----------------------------LWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPH 347 (483)
T ss_pred hhhcccCCCCCchHH-----------------------------HHHHhcCCCceEEEeccccchhhhhhhhhhhcCChh
Confidence 444444443321110 0011123567777777777765422 222345677
Q ss_pred cceeeccCcccc---cCCccccCccccceecccCccCCccc-----cccccCCCCCCEEEeeCCCCCCCCCCCceeccCC
Q 003936 309 LNRLIIDGTAIR---ELPEGLGQLALLSKLELKNCSELEYI-----SSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDG 380 (785)
Q Consensus 309 L~~L~L~~n~i~---~lp~~l~~l~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~ 380 (785)
|+.+++.+.... ++-..-.+.+.|+.|.++.|...... ......+..|+.+.+++|+.+++
T Consensus 348 Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d----------- 416 (483)
T KOG4341|consen 348 LERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD----------- 416 (483)
T ss_pred hhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH-----------
Confidence 888877775443 22222345678888888877766543 33334567777888888774332
Q ss_pred CCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCC
Q 003936 381 SGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLE 424 (785)
Q Consensus 381 ~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~ 424 (785)
..-..+..+++|+.+++.+|....
T Consensus 417 --------------------~~Le~l~~c~~Leri~l~~~q~vt 440 (483)
T KOG4341|consen 417 --------------------ATLEHLSICRNLERIELIDCQDVT 440 (483)
T ss_pred --------------------HHHHHHhhCcccceeeeechhhhh
Confidence 111233456788888888886543
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=1.6e-06 Score=60.51 Aligned_cols=39 Identities=36% Similarity=0.562 Sum_probs=18.1
Q ss_pred CCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCCCCc
Q 003936 551 SLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 551 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~lp 589 (785)
+|++|++++|+++.+|+.+.++++|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 344444444444444444445555555555555544444
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.14 E-value=8.2e-08 Score=82.43 Aligned_cols=110 Identities=24% Similarity=0.337 Sum_probs=87.9
Q ss_pred CCCEEEeeCCcCcc--cCCCccccccccceEEecCeeccccCcccCC-CCCCcEEEccCCccccccccccCCCCCCEEEc
Q 003936 481 SLTSLEIIDCKNFM--RLPDEIGNLEYLKVLTIKGTAIREVPESLGQ-LSSLEWLVLSDNNLQIIPESLNQLSSLVSLKL 557 (785)
Q Consensus 481 ~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~-l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 557 (785)
.+..++|+.|++-- ..+..+.....|+..+|++|.+..+|..|.. ++.++.|++++|.++++|..+..++.|+.|++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 45566777776531 2223344456778889999999999877755 45899999999999999999999999999999
Q ss_pred ccCCCCCCCCcCcCCCCCCEEeCCCCCCCCCcc
Q 003936 558 SNNNLERIPERLDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 558 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
+.|.+...|..+..+.+|-.|+..+|.+..||-
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 999999988888889999999999998877774
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=5.4e-08 Score=94.41 Aligned_cols=224 Identities=19% Similarity=0.186 Sum_probs=141.4
Q ss_pred eEEEcCCCCcccccccccCC--CCCcEEecCCCccccCCCC----Cccc-cccceeccccccCcc-ccccccccCCcccE
Q 003936 68 VSLKMPGSKVTQLWDDVQNL--VSLKRIDLKYSKLLTKLPD----LSLA-QNLEILDLGYCSSLT-ETHSSIQYLNKLEV 139 (785)
Q Consensus 68 ~~L~L~~~~i~~l~~~~~~l--~~L~~L~Ls~n~~~~~~~~----l~~l-~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~ 139 (785)
+.||+.+-.|.. .....+ ....++.+... ...-|. +.-+ ..||+|||+.-.+.. .+..-+..+.+|+.
T Consensus 139 ~~lDl~~r~i~p--~~l~~l~~rgV~v~Rlar~--~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 139 QTLDLTGRNIHP--DVLGRLLSRGVIVFRLARS--FMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeccCCCccCh--hHHHHHHhCCeEEEEcchh--hhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence 456666655542 222222 34555666543 233332 2222 359999999866544 34455778999999
Q ss_pred EecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhccccccceecccccccc
Q 003936 140 LDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLE 218 (785)
Q Consensus 140 L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~ 218 (785)
|.|.++.....+-..+ +-.+|+.|+++.|+.++.... ---+.+++.|..|++++|....
T Consensus 215 lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~--------------------~ll~~scs~L~~LNlsWc~l~~ 274 (419)
T KOG2120|consen 215 LSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENAL--------------------QLLLSSCSRLDELNLSWCFLFT 274 (419)
T ss_pred ccccccccCcHHHHHHhccccceeeccccccccchhHH--------------------HHHHHhhhhHhhcCchHhhccc
Confidence 9999976655555555 788999999999987765321 1135688999999999998766
Q ss_pred ccchh-hh-cccccccccccCCCC-CccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCC
Q 003936 219 NISSS-IF-KLQFLESIRIHRCPN-LQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPN 295 (785)
Q Consensus 219 ~~~~~-l~-~l~~L~~L~l~~~~~-L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 295 (785)
..... +. --+.|..|+++++.. +..-+ +......+++|..|+++||..
T Consensus 275 ~~Vtv~V~hise~l~~LNlsG~rrnl~~sh-----------------------------~~tL~~rcp~l~~LDLSD~v~ 325 (419)
T KOG2120|consen 275 EKVTVAVAHISETLTQLNLSGYRRNLQKSH-----------------------------LSTLVRRCPNLVHLDLSDSVM 325 (419)
T ss_pred hhhhHHHhhhchhhhhhhhhhhHhhhhhhH-----------------------------HHHHHHhCCceeeeccccccc
Confidence 54322 22 236677788877632 11000 001122478888888888877
Q ss_pred CC-CCCccccCccccceeeccCcccc--cCCccccCccccceecccCccCCc
Q 003936 296 FE-RLPDELGNLQALNRLIIDGTAIR--ELPEGLGQLALLSKLELKNCSELE 344 (785)
Q Consensus 296 ~~-~lp~~l~~l~~L~~L~L~~n~i~--~lp~~l~~l~~L~~L~l~~~~~~~ 344 (785)
++ ..-..|.+++.|++|.++.+..- +.--.+...|+|.+|++-+|-.-+
T Consensus 326 l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt 377 (419)
T KOG2120|consen 326 LKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDT 377 (419)
T ss_pred cCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCch
Confidence 64 33345677888999999885432 111236778999999998876544
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=5.1e-06 Score=87.20 Aligned_cols=38 Identities=37% Similarity=0.607 Sum_probs=22.6
Q ss_pred CCcEEEeccccCCCcCCcccCCcccchhhhccCc-cccccC
Q 003936 411 SLTSLEIIDCKKLERLPDELGNLEALEELRVEGT-GIREVP 450 (785)
Q Consensus 411 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n-~i~~lp 450 (785)
+|+.|.+++|..+..+|..+ .++|+.|++++| .+..+|
T Consensus 73 sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 73 ELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred CCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 57777777776666666543 245666666655 444444
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.10 E-value=2.7e-06 Score=59.38 Aligned_cols=40 Identities=40% Similarity=0.557 Sum_probs=27.8
Q ss_pred CCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCC
Q 003936 527 SSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIP 566 (785)
Q Consensus 527 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 566 (785)
++|++|++++|+++.+|..++++++|+.|++++|++++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 3577777777777777776777777777777777777654
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.93 E-value=4.6e-07 Score=77.93 Aligned_cols=131 Identities=21% Similarity=0.209 Sum_probs=97.9
Q ss_pred cchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCcc-ccccccceEEecC
Q 003936 435 ALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEI-GNLEYLKVLTIKG 513 (785)
Q Consensus 435 ~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~ 513 (785)
.+..++|++|++..++..+..+. ....|+..++++|.+-. +|..| ...+.++.|++++
T Consensus 28 E~h~ldLssc~lm~i~davy~l~--------------------~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~ 86 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLS--------------------KGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLAN 86 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHh--------------------CCceEEEEecccchhhh-CCHHHhhccchhhhhhcch
Confidence 45567777777776666555441 11556777888887643 44444 3456889999999
Q ss_pred eeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 514 TAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 514 n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
|.+.++|..+..++.|+.|+++.|.+...|..+..|.+|-.|+..+|.+..||..+-.-+..-..++.++++.
T Consensus 87 neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~ 159 (177)
T KOG4579|consen 87 NEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLG 159 (177)
T ss_pred hhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCccc
Confidence 9999999999999999999999999999999888899999999999999888766433333333444555444
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.91 E-value=2.2e-07 Score=100.55 Aligned_cols=130 Identities=24% Similarity=0.227 Sum_probs=98.2
Q ss_pred cccCCCCCCCceEEEEecCCCCccccc--ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCC--ccc
Q 003936 35 VHSLEGVPFTELRYFEWHQFPLKTLNI--LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDL--SLA 110 (785)
Q Consensus 35 ~~~~~~~~~~~L~~L~l~~~~l~~lp~--~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l--~~l 110 (785)
..+..++.|.+|.+.+.+.|.+..+.. .-++.|+.|+|++|+++++- .+..+++|++|||++|. +..+|.+ ..+
T Consensus 155 gd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc 232 (1096)
T KOG1859|consen 155 GDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC 232 (1096)
T ss_pred cccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh
Confidence 445566666888889999999988877 77889999999999998774 68889999999999997 4556654 344
Q ss_pred cccceeccccccCccccccccccCCcccEEecCCCCCCC--cCCCccccccccEEeccCCc
Q 003936 111 QNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLT--SLPTSIHSKYLKRLVLRGCS 169 (785)
Q Consensus 111 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~--~~p~~~~l~~L~~L~ls~~~ 169 (785)
. |+.|++++|.. ..+ ..+.+|++|+.||+++|-... .+.....+..|+.|+|.||+
T Consensus 233 ~-L~~L~lrnN~l-~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 233 K-LQLLNLRNNAL-TTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred h-heeeeecccHH-Hhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 4 99999999874 333 358889999999999854333 22222267888999999886
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=5.4e-06 Score=80.83 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=39.6
Q ss_pred CCCCcEEecccCCCCC-CCCccccCccccceeeccCcccccCCc--cccCccccceecccCccCCcccc
Q 003936 282 FKSLTSLEIIDCPNFE-RLPDELGNLQALNRLIIDGTAIRELPE--GLGQLALLSKLELKNCSELEYIS 347 (785)
Q Consensus 282 l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~L~~n~i~~lp~--~l~~l~~L~~L~l~~~~~~~~~~ 347 (785)
|+++..+-+.+|+.-+ .-...+..++.+..|.|+.++|....+ .+..++.|..|.++++++...+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 4444555444443321 122334455666678888888774432 36778888888888888776543
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.80 E-value=9.9e-07 Score=89.98 Aligned_cols=275 Identities=18% Similarity=0.227 Sum_probs=135.8
Q ss_pred CceEEEEecCCCCc---cccc--ccccCceEEEcCCCC-ccc--ccccccCCCCCcEEecCCCccccCCC---CCccccc
Q 003936 44 TELRYFEWHQFPLK---TLNI--LHWENLVSLKMPGSK-VTQ--LWDDVQNLVSLKRIDLKYSKLLTKLP---DLSLAQN 112 (785)
Q Consensus 44 ~~L~~L~l~~~~l~---~lp~--~~l~~L~~L~L~~~~-i~~--l~~~~~~l~~L~~L~Ls~n~~~~~~~---~l~~l~~ 112 (785)
..||.|.+.|+.-. .+-. ..++++++|.+.++. ++. +-.--..+.+|++|+|..|..++... -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 44666666665332 2222 556666666666654 221 11112456677777777754433322 1345677
Q ss_pred cceeccccccCccc--cccccccCCcccEEecCCCCCCCcCCCc-c--ccccccEEeccCCcCCCCCCCccccccccccc
Q 003936 113 LEILDLGYCSSLTE--THSSIQYLNKLEVLDLDRCKSLTSLPTS-I--HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLP 187 (785)
Q Consensus 113 L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~L~~~~~~~~~p~~-~--~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~ 187 (785)
|++|++++|..+.. +-.-...++.++.+.+++|...+.-.-. + ...-+..+++..|..+++....
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~---------- 287 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW---------- 287 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH----------
Confidence 77777777764332 1122344555666656665433210000 0 2333444555555444332100
Q ss_pred cccccccccCcchhccccccceeccccccccccc-hh-hhcccccccccccCCCCCccccCCCcccCCCCCccCCccccc
Q 003936 188 LLGVGIEELPSSIKCLSNIGELLIYSCKRLENIS-SS-IFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELK 265 (785)
Q Consensus 188 l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~-~~-l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~ 265 (785)
..-..+..|+.|+.++|...+..+ .. ..+..+|+.+.++.|.++... .++..
T Consensus 288 ----------~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~-----~ft~l----------- 341 (483)
T KOG4341|consen 288 ----------LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR-----GFTML----------- 341 (483)
T ss_pred ----------HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh-----hhhhh-----------
Confidence 001234455666666555433221 11 224455555555555443211 11100
Q ss_pred ccCCCCCCCCCCCccCCCCCcEEecccCCCCC--CCCccccCccccceeeccCccc-cc-----CCccccCccccceecc
Q 003936 266 LKKCPRPESLPSGQCMFKSLTSLEIIDCPNFE--RLPDELGNLQALNRLIIDGTAI-RE-----LPEGLGQLALLSKLEL 337 (785)
Q Consensus 266 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~lp~~l~~l~~L~~L~L~~n~i-~~-----lp~~l~~l~~L~~L~l 337 (785)
-.+.+.|+.+++.+|.... .+...-.+++.|+.+.++++.. ++ +...-..+..|+.+.+
T Consensus 342 -------------~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL 408 (483)
T KOG4341|consen 342 -------------GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLEL 408 (483)
T ss_pred -------------hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeee
Confidence 0124555555555554432 2222234577777777776432 21 1222345677888888
Q ss_pred cCccCCcc-ccccccCCCCCCEEEeeCCCCC
Q 003936 338 KNCSELEY-ISSSIFKLKSVESIEISNCSNL 367 (785)
Q Consensus 338 ~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l 367 (785)
++|+.+.. .-+.+..+++|+.+++.+|+..
T Consensus 409 ~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 409 DNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred cCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 88887653 3334566788888888888744
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.69 E-value=8.5e-06 Score=79.50 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=17.5
Q ss_pred CCCcEEEeccccCCC-cCCcccCCcccchhhhccCcccc
Q 003936 410 KSLTSLEIIDCKKLE-RLPDELGNLEALEELRVEGTGIR 447 (785)
Q Consensus 410 ~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~L~~n~i~ 447 (785)
.+|+.|.+.+....- .....+..++.+++|+++.|.+.
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~r 159 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLR 159 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhh
Confidence 455555554433211 12223445555666666655433
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.69 E-value=6.5e-05 Score=69.56 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=67.6
Q ss_pred CceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccccc-cCCCCCcEEecCCCccccC--CCCCccccccceeccc
Q 003936 44 TELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDV-QNLVSLKRIDLKYSKLLTK--LPDLSLAQNLEILDLG 119 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~-~~l~~L~~L~Ls~n~~~~~--~~~l~~l~~L~~L~Ls 119 (785)
.....+|++.|.+..++. ..+++|..|.+.+|+|+.+-..+ ..+++|+.|.|.+|.+... +..+..++.|++|.+-
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 667778888888887777 77888888888888888775554 3456788888888765332 2346677777777777
Q ss_pred cccCcccc---ccccccCCcccEEecCC
Q 003936 120 YCSSLTET---HSSIQYLNKLEVLDLDR 144 (785)
Q Consensus 120 ~n~~~~~~---~~~l~~l~~L~~L~L~~ 144 (785)
+|.....- --.+..+++|+.||.++
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 77643211 12355666666666654
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.68 E-value=6.1e-05 Score=69.75 Aligned_cols=122 Identities=17% Similarity=0.195 Sum_probs=91.7
Q ss_pred eEEEEecCCCCccccc--ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCc-cccccceecccccc
Q 003936 46 LRYFEWHQFPLKTLNI--LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLS-LAQNLEILDLGYCS 122 (785)
Q Consensus 46 L~~L~l~~~~l~~lp~--~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~-~l~~L~~L~Ls~n~ 122 (785)
=+.+++.++++..+.. ........+||++|.+..+ ..+..++.|.+|.|.+|++...-|.+. .+++|..|.|.+|.
T Consensus 21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 3555666666554444 4566788999999999877 457889999999999999988888864 56789999999997
Q ss_pred Ccc-ccccccccCCcccEEecCCCCCCCcC--CCcc--ccccccEEeccCC
Q 003936 123 SLT-ETHSSIQYLNKLEVLDLDRCKSLTSL--PTSI--HSKYLKRLVLRGC 168 (785)
Q Consensus 123 ~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~--p~~~--~l~~L~~L~ls~~ 168 (785)
+.. ..-.-+..+++|++|.+-+|+....- -..+ .+++|++||.++-
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 543 11234788999999999997654421 1122 7899999999864
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.49 E-value=1.8e-05 Score=90.44 Aligned_cols=124 Identities=19% Similarity=0.216 Sum_probs=60.8
Q ss_pred CceEEEEecCCCCc--cccc---ccccCceEEEcCCCCcc--cccccccCCCCCcEEecCCCccccCCCCCcccccccee
Q 003936 44 TELRYFEWHQFPLK--TLNI---LHWENLVSLKMPGSKVT--QLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEIL 116 (785)
Q Consensus 44 ~~L~~L~l~~~~l~--~lp~---~~l~~L~~L~L~~~~i~--~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L 116 (785)
.+||+|+++|...- .=|. ..++.|+.|.+.+-.+. .+..-..++++|+.||+|++. .+.+..++.+++||+|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHHH
Confidence 55666666654321 1111 34556666666654443 122224556666666666664 2333445666666666
Q ss_pred ccccccCcc-ccccccccCCcccEEecCCCCCCCcC--C-----CccccccccEEeccCC
Q 003936 117 DLGYCSSLT-ETHSSIQYLNKLEVLDLDRCKSLTSL--P-----TSIHSKYLKRLVLRGC 168 (785)
Q Consensus 117 ~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~--p-----~~~~l~~L~~L~ls~~ 168 (785)
.+.+=.+.. ..-..+.+|++|+.||+|.-.....- . ....+++|+.||.|+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 655533222 22233555666666666653322211 0 0113566677776654
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.33 E-value=0.00011 Score=84.21 Aligned_cols=104 Identities=22% Similarity=0.229 Sum_probs=54.0
Q ss_pred ccCceEEEcCCCCcc-ccc-ccc-cCCCCCcEEecCCCccccCC-C-CCccccccceeccccccCccccccccccCCccc
Q 003936 64 WENLVSLKMPGSKVT-QLW-DDV-QNLVSLKRIDLKYSKLLTKL-P-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLE 138 (785)
Q Consensus 64 l~~L~~L~L~~~~i~-~l~-~~~-~~l~~L~~L~Ls~n~~~~~~-~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~ 138 (785)
-.+|++|++++...- .-| ..+ ..||.|+.|.+++-.+...- . -..++++|+.||+|++.+.. + ..+++|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHH
Confidence 456666666664322 212 112 34667777766664432221 1 14566667777777655322 2 4566667777
Q ss_pred EEecCCCCCCC--cCCCccccccccEEeccCCc
Q 003936 139 VLDLDRCKSLT--SLPTSIHSKYLKRLVLRGCS 169 (785)
Q Consensus 139 ~L~L~~~~~~~--~~p~~~~l~~L~~L~ls~~~ 169 (785)
.|.+.+-.... .+-.-+.+++|+.||+|.-.
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 66666533222 11122266667777776543
No 61
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.20 E-value=0.00022 Score=68.94 Aligned_cols=79 Identities=15% Similarity=0.200 Sum_probs=46.5
Q ss_pred ccccEEeccCCcCCCCCCCccc-------cccccccccccccccc--c----Ccchhccccccceeccccccccc----c
Q 003936 158 KYLKRLVLRGCSNLKNLPKMTS-------CHLRSTLPLLGVGIEE--L----PSSIKCLSNIGELLIYSCKRLEN----I 220 (785)
Q Consensus 158 ~~L~~L~ls~~~~l~~lp~~~~-------~~L~~~L~l~~~~i~~--l----p~~l~~l~~L~~L~L~~~~~~~~----~ 220 (785)
+.|++.++..|+ +...|.... ..++ ++.+..|.|.. + -..+..+.+|+.|++..|.++.. +
T Consensus 157 p~Le~vicgrNR-lengs~~~~a~~l~sh~~lk-~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 157 PKLEVVICGRNR-LENGSKELSAALLESHENLK-EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred CCceEEEeccch-hccCcHHHHHHHHHhhcCce-eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 456666666553 322222111 2455 66666666641 1 12456788999999999987643 3
Q ss_pred chhhhcccccccccccCC
Q 003936 221 SSSIFKLQFLESIRIHRC 238 (785)
Q Consensus 221 ~~~l~~l~~L~~L~l~~~ 238 (785)
...+...+.|+.|.+..|
T Consensus 235 a~al~~W~~lrEL~lnDC 252 (388)
T COG5238 235 ADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHhcccchhhhccccch
Confidence 344556677788887776
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=4.3e-05 Score=74.02 Aligned_cols=99 Identities=19% Similarity=0.182 Sum_probs=57.9
Q ss_pred hcccccceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccc--cccCCCCCcE
Q 003936 16 SKMTELRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWD--DVQNLVSLKR 92 (785)
Q Consensus 16 ~~l~~Lr~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~--~~~~l~~L~~ 92 (785)
+.+.+.+.|+..|+.+++ +.+-..+ +.|++|.|+-|++++|.. ..+++|++|.|..|.|..+-+ -+.++++||.
T Consensus 16 sdl~~vkKLNcwg~~L~D-Isic~kM--p~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDD-ISICEKM--PLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred hHHHHhhhhcccCCCccH-HHHHHhc--ccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 345566667777766533 1111111 567777777777777777 777777777777777765532 2566777777
Q ss_pred EecCCCccccCCCC------Cccccccceec
Q 003936 93 IDLKYSKLLTKLPD------LSLAQNLEILD 117 (785)
Q Consensus 93 L~Ls~n~~~~~~~~------l~~l~~L~~L~ 117 (785)
|.|..|.-....+. +..+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77766654333321 34455555554
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.79 E-value=0.00038 Score=67.39 Aligned_cols=84 Identities=24% Similarity=0.172 Sum_probs=44.1
Q ss_pred CCCCEEEeeCCcCcccC----CCccccccccceEEecCeecccc------CcccCCCCCCcEEEccCCcccc-----ccc
Q 003936 480 KSLTSLEIIDCKNFMRL----PDEIGNLEYLKVLTIKGTAIREV------PESLGQLSSLEWLVLSDNNLQI-----IPE 544 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~L~~n~l~~l------p~~~~~l~~L~~L~Ls~n~l~~-----lp~ 544 (785)
+.|+......|.+..-. ...+..-..|+++.+..|.|..= -..+..+.+|+.|||.+|-++. +..
T Consensus 157 p~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~ 236 (388)
T COG5238 157 PKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLAD 236 (388)
T ss_pred CCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHH
Confidence 45555555555542211 01122224566666666665411 1123456677777777776653 334
Q ss_pred cccCCCCCCEEEcccCCCC
Q 003936 545 SLNQLSSLVSLKLSNNNLE 563 (785)
Q Consensus 545 ~l~~l~~L~~L~L~~n~l~ 563 (785)
.+...+.|+.|.+..|-++
T Consensus 237 al~~W~~lrEL~lnDClls 255 (388)
T COG5238 237 ALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred Hhcccchhhhccccchhhc
Confidence 4455556777777777665
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.00015 Score=70.41 Aligned_cols=96 Identities=20% Similarity=0.179 Sum_probs=53.9
Q ss_pred ceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCC--CCCccccccceeccccc
Q 003936 45 ELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKL--PDLSLAQNLEILDLGYC 121 (785)
Q Consensus 45 ~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~--~~l~~l~~L~~L~Ls~n 121 (785)
+.+.|++-|+.+.++.. ..++.|++|.|+-|+|+.+ ..+..+++|+.|.|..|.+...- .-+.++++|+.|.|..|
T Consensus 20 ~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 45566666666666666 6666677777777766665 33566666666666666532211 12455666666666665
Q ss_pred cCcccccc-----ccccCCcccEEe
Q 003936 122 SSLTETHS-----SIQYLNKLEVLD 141 (785)
Q Consensus 122 ~~~~~~~~-----~l~~l~~L~~L~ 141 (785)
.-.+.-+. .+.-|++|+.||
T Consensus 99 PCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 99 PCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred CcccccchhHHHHHHHHcccchhcc
Confidence 54333221 234455555554
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.44 E-value=0.0012 Score=64.07 Aligned_cols=79 Identities=28% Similarity=0.299 Sum_probs=39.1
Q ss_pred CceEEEEecCCCCccccc-ccccCceEEEcCCC--Ccc-cccccccCCCCCcEEecCCCccc--cCCCCCccccccceec
Q 003936 44 TELRYFEWHQFPLKTLNI-LHWENLVSLKMPGS--KVT-QLWDDVQNLVSLKRIDLKYSKLL--TKLPDLSLAQNLEILD 117 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~--~i~-~l~~~~~~l~~L~~L~Ls~n~~~--~~~~~l~~l~~L~~L~ 117 (785)
..|+.|++.+..++++.. ..+++|+.|.++.| ++. .++.-...+++|++|+|++|++. ..++.+..+.+|..|+
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 455555555555555554 55555666666655 332 22222334455666666555532 1122344445555555
Q ss_pred ccccc
Q 003936 118 LGYCS 122 (785)
Q Consensus 118 Ls~n~ 122 (785)
+.+|.
T Consensus 123 l~n~~ 127 (260)
T KOG2739|consen 123 LFNCS 127 (260)
T ss_pred cccCC
Confidence 55554
No 66
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.39 E-value=0.0082 Score=53.71 Aligned_cols=104 Identities=19% Similarity=0.239 Sum_probs=53.5
Q ss_pred ecCHHHHhcccccceeeeecCCCccccccCCCCCC--CceEEEEecCCCCccccc---ccccCceEEEcCCCCcccccc-
Q 003936 9 QINPYTFSKMTELRLLKFCGSKNKCMVHSLEGVPF--TELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLWD- 82 (785)
Q Consensus 9 ~i~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~~- 82 (785)
.|+..+|.++++|+.+.+.. .+ ..+....+. ++|+.+.+.++ +..++. ..++.|+.+.+.. .+..++.
T Consensus 2 ~i~~~~F~~~~~l~~i~~~~-~~---~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~ 75 (129)
T PF13306_consen 2 SIGNNAFYNCSNLESITFPN-TI---KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDN 75 (129)
T ss_dssp EE-TTTTTT-TT--EEEETS-T-----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TT
T ss_pred EECHHHHhCCCCCCEEEECC-Ce---eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccc
Confidence 46778999999999998875 33 456665555 57888887764 666666 4555677777765 4444433
Q ss_pred cccCCCCCcEEecCCCccccCCC-CCccccccceecccc
Q 003936 83 DVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGY 120 (785)
Q Consensus 83 ~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~ 120 (785)
.|..+++|+.+++..+ +..... .+..+ +|+.+.+..
T Consensus 76 ~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 3566777777777554 221111 35555 666666654
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.28 E-value=0.016 Score=51.74 Aligned_cols=108 Identities=18% Similarity=0.306 Sum_probs=58.7
Q ss_pred ccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCcccccc-ccccCCCCCC
Q 003936 476 LYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSLV 553 (785)
Q Consensus 476 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~ 553 (785)
+..+++|+.+.+.. .+...-...|.++++|+.+.+.++ +..++ ..|.++++|+.+.+.+ .+..++ ..|..++.|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 44556888888774 344444556778888888888775 66663 4577777888888866 555555 3466788888
Q ss_pred EEEcccCCCCCCC-CcCcCCCCCCEEeCCCCCCCCCc
Q 003936 554 SLKLSNNNLERIP-ERLDPLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 554 ~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~~lp 589 (785)
.+++..+ ++.++ ..+.+. .|+.+.+.. .++.++
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~ 118 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIE 118 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS--
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEEC
Confidence 8888765 66663 345565 788887765 344443
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.24 E-value=0.0011 Score=74.70 Aligned_cols=109 Identities=30% Similarity=0.384 Sum_probs=60.8
Q ss_pred cccCceEEEcCCC-Cccc--ccccccCCCCCcEEecCCC-ccccCCC-----CCccccccceeccccccC-ccccccccc
Q 003936 63 HWENLVSLKMPGS-KVTQ--LWDDVQNLVSLKRIDLKYS-KLLTKLP-----DLSLAQNLEILDLGYCSS-LTETHSSIQ 132 (785)
Q Consensus 63 ~l~~L~~L~L~~~-~i~~--l~~~~~~l~~L~~L~Ls~n-~~~~~~~-----~l~~l~~L~~L~Ls~n~~-~~~~~~~l~ 132 (785)
..+.|+.|.+..+ .++. +-......++|+.|+++++ ......+ ....+++|+.|+++++.. ....-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3566777766665 3333 2233566777888887763 2222222 134557777788777762 222222232
Q ss_pred -cCCcccEEecCCCCCCCcC--CCcc-ccccccEEeccCCcCC
Q 003936 133 -YLNKLEVLDLDRCKSLTSL--PTSI-HSKYLKRLVLRGCSNL 171 (785)
Q Consensus 133 -~l~~L~~L~L~~~~~~~~~--p~~~-~l~~L~~L~ls~~~~l 171 (785)
.+++|++|.+.+|..++.. -... .+++|++|++++|..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3677777777777643321 1111 5677888888777644
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.15 E-value=0.0035 Score=61.05 Aligned_cols=85 Identities=26% Similarity=0.383 Sum_probs=54.7
Q ss_pred ccccccceEEecCeeccccCcccCCCCCCcEEEccCC--cccc-ccccccCCCCCCEEEcccCCCCCC--CCcCcCCCCC
Q 003936 501 GNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDN--NLQI-IPESLNQLSSLVSLKLSNNNLERI--PERLDPLSSL 575 (785)
Q Consensus 501 ~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n--~l~~-lp~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L 575 (785)
..+..|+.|.+.+..++++.. +..+++|+.|.+|.| .+.. ++.....+++|++|++++|+++.+ -..+..+.+|
T Consensus 40 d~~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 334455555555555554432 455788888888888 4432 555555668888888888887642 1125667778
Q ss_pred CEEeCCCCCCC
Q 003936 576 KYLDLFENNLD 586 (785)
Q Consensus 576 ~~L~l~~n~l~ 586 (785)
..|++.+|.-+
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 88888888743
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.82 E-value=0.0049 Score=35.68 Aligned_cols=19 Identities=58% Similarity=0.803 Sum_probs=9.4
Q ss_pred CcEEEccCCcccccccccc
Q 003936 529 LEWLVLSDNNLQIIPESLN 547 (785)
Q Consensus 529 L~~L~Ls~n~l~~lp~~l~ 547 (785)
|++|||++|+++.+|.+|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.38 E-value=0.0016 Score=73.26 Aligned_cols=35 Identities=31% Similarity=0.351 Sum_probs=16.2
Q ss_pred ccccceeccccccCccc--cccccccCCcccEEecCC
Q 003936 110 AQNLEILDLGYCSSLTE--THSSIQYLNKLEVLDLDR 144 (785)
Q Consensus 110 l~~L~~L~Ls~n~~~~~--~~~~l~~l~~L~~L~L~~ 144 (785)
++.|+.|.+.+|..... +-......++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 44555555555443332 223344455555555554
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.12 E-value=0.007 Score=35.03 Aligned_cols=20 Identities=45% Similarity=0.627 Sum_probs=12.2
Q ss_pred CCCEEEcccCCCCCCCCcCc
Q 003936 551 SLVSLKLSNNNLERIPERLD 570 (785)
Q Consensus 551 ~L~~L~L~~n~l~~lp~~l~ 570 (785)
+|++|+|++|+++.+|++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665544
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.84 E-value=0.015 Score=31.19 Aligned_cols=16 Identities=44% Similarity=0.725 Sum_probs=6.0
Q ss_pred CCCEEeCCCCCCCCCc
Q 003936 574 SLKYLDLFENNLDRIP 589 (785)
Q Consensus 574 ~L~~L~l~~n~l~~lp 589 (785)
+|+.|++++|+|+++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4455555555554443
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.38 E-value=0.026 Score=30.21 Aligned_cols=16 Identities=50% Similarity=0.773 Sum_probs=6.1
Q ss_pred CCCEEEcccCCCCCCC
Q 003936 551 SLVSLKLSNNNLERIP 566 (785)
Q Consensus 551 ~L~~L~L~~n~l~~lp 566 (785)
+|+.|+|++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.25 E-value=0.0028 Score=60.17 Aligned_cols=86 Identities=19% Similarity=0.265 Sum_probs=73.4
Q ss_pred cccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEe
Q 003936 500 IGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLD 579 (785)
Q Consensus 500 ~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~ 579 (785)
+......+.||++.|++..+-..|+.++.|..||++.|.+..+|..++.+..+..+++.+|+.+..|.+.+..+.+++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhh
Confidence 33455667788888888777777888888999999999999999999999899999999999999999999999999999
Q ss_pred CCCCCC
Q 003936 580 LFENNL 585 (785)
Q Consensus 580 l~~n~l 585 (785)
..++++
T Consensus 118 ~k~~~~ 123 (326)
T KOG0473|consen 118 QKKTEF 123 (326)
T ss_pred hccCcc
Confidence 999874
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.17 E-value=0.0035 Score=68.87 Aligned_cols=175 Identities=26% Similarity=0.307 Sum_probs=106.7
Q ss_pred CcEEEeccccCCCc----CCcccCCcccchhhhccCccccccC-----hhhhh--hhhcccccccCCCCcc----CCccc
Q 003936 412 LTSLEIIDCKKLER----LPDELGNLEALEELRVEGTGIREVP-----KSLAQ--LALSKLKLKKCSSFES----LPSRL 476 (785)
Q Consensus 412 L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~L~~n~i~~lp-----~~~~~--l~L~~L~l~~~~~~~~----lp~~~ 476 (785)
+..|.+.+|.+... +-..+...+.|+.|++++|.+.... ..+.. ..++.+++..|..... +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 56666666665443 2233455667777777777766111 11111 1255566666554432 33334
Q ss_pred cCCCCCCEEEeeCCcCcc----cCCCccc----cccccceEEecCeecccc-----CcccCCCCC-CcEEEccCCcccc-
Q 003936 477 YVSKSLTSLEIIDCKNFM----RLPDEIG----NLEYLKVLTIKGTAIREV-----PESLGQLSS-LEWLVLSDNNLQI- 541 (785)
Q Consensus 477 ~~~~~L~~L~l~~~~~~~----~~~~~~~----~l~~L~~L~L~~n~l~~l-----p~~~~~l~~-L~~L~Ls~n~l~~- 541 (785)
.....++.++++.|.+.. .++..+. ...+++.|.+.++.++.. -..+...++ +..|++..|.+..
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 445677777887777632 1222333 467788888888777621 233445555 7778888887763
Q ss_pred ----ccccccCC-CCCCEEEcccCCCCC-----CCCcCcCCCCCCEEeCCCCCCC
Q 003936 542 ----IPESLNQL-SSLVSLKLSNNNLER-----IPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 542 ----lp~~l~~l-~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
+.+.+..+ ..++.++++.|.++. +.+.+..+..++.+.+++|++.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44556666 778888999888874 4556677778888888888865
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=90.66 E-value=0.0029 Score=69.60 Aligned_cols=105 Identities=28% Similarity=0.316 Sum_probs=63.1
Q ss_pred CCCCEEEeeCCcCccc----CCCccccccc-cceEEecCeeccc-----cCcccCCC-CCCcEEEccCCcccc-----cc
Q 003936 480 KSLTSLEIIDCKNFMR----LPDEIGNLEY-LKVLTIKGTAIRE-----VPESLGQL-SSLEWLVLSDNNLQI-----IP 543 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~----~~~~~~~l~~-L~~L~L~~n~l~~-----lp~~~~~l-~~L~~L~Ls~n~l~~-----lp 543 (785)
.++++|++.+|.+... +-..+...+. +.+|++.+|.+.. +.+.+..+ ..++.++++.|.+++ +.
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 4555555655554321 1112333344 5567777776652 33445556 678999999998874 55
Q ss_pred ccccCCCCCCEEEcccCCCCC-----CCCcCcCCCCCCEEeCCCCC
Q 003936 544 ESLNQLSSLVSLKLSNNNLER-----IPERLDPLSSLKYLDLFENN 584 (785)
Q Consensus 544 ~~l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~ 584 (785)
..+..++.++.|.+++|.+.. +-..+..-..+..+-+.++.
T Consensus 284 ~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~ 329 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTG 329 (478)
T ss_pred HHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccC
Confidence 667778899999999998863 12223333445555555444
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.97 E-value=0.014 Score=55.66 Aligned_cols=84 Identities=11% Similarity=0.087 Sum_probs=52.4
Q ss_pred ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceeccccccCccccccccccCCcccEEe
Q 003936 62 LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLD 141 (785)
Q Consensus 62 ~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ 141 (785)
...++.+.||++.|++..+-..|+.++.|..|+++.|.+-....++.....++.+++..|. ....|.+++..+++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNE 117 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhh
Confidence 4455666677776666666556666666666777666533322256666666666666554 556666677777777766
Q ss_pred cCCCC
Q 003936 142 LDRCK 146 (785)
Q Consensus 142 L~~~~ 146 (785)
+.++.
T Consensus 118 ~k~~~ 122 (326)
T KOG0473|consen 118 QKKTE 122 (326)
T ss_pred hccCc
Confidence 66644
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.94 E-value=0.28 Score=29.54 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=15.4
Q ss_pred CCCCCEEeCCCCCCCCCccc
Q 003936 572 LSSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 572 l~~L~~L~l~~n~l~~lp~~ 591 (785)
+++|++|++++|+|+.+|+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46788888888888888754
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.94 E-value=0.28 Score=29.54 Aligned_cols=20 Identities=40% Similarity=0.581 Sum_probs=15.4
Q ss_pred CCCCCEEeCCCCCCCCCccc
Q 003936 572 LSSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 572 l~~L~~L~l~~n~l~~lp~~ 591 (785)
+++|++|++++|+|+.+|+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46788888888888888754
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.90 E-value=0.22 Score=30.01 Aligned_cols=20 Identities=45% Similarity=0.657 Sum_probs=13.9
Q ss_pred CCCCCEEEcccCCCCCCCCc
Q 003936 549 LSSLVSLKLSNNNLERIPER 568 (785)
Q Consensus 549 l~~L~~L~L~~n~l~~lp~~ 568 (785)
+++|+.|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.90 E-value=0.22 Score=30.01 Aligned_cols=20 Identities=45% Similarity=0.657 Sum_probs=13.9
Q ss_pred CCCCCEEEcccCCCCCCCCc
Q 003936 549 LSSLVSLKLSNNNLERIPER 568 (785)
Q Consensus 549 l~~L~~L~L~~n~l~~lp~~ 568 (785)
+++|+.|+|++|+++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.76 E-value=0.28 Score=29.37 Aligned_cols=19 Identities=42% Similarity=0.623 Sum_probs=15.3
Q ss_pred CCCCEEeCCCCCCCCCccc
Q 003936 573 SSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 573 ~~L~~L~l~~n~l~~lp~~ 591 (785)
++|++|++++|+|+++|++
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL 20 (26)
T smart00364 2 PSLKELNVSNNQLTSLPEL 20 (26)
T ss_pred cccceeecCCCccccCccc
Confidence 4688888888888888875
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.28 E-value=0.074 Score=49.95 Aligned_cols=63 Identities=22% Similarity=0.350 Sum_probs=46.0
Q ss_pred cccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc---ccccccEEeccCCcCCCC
Q 003936 111 QNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI---HSKYLKRLVLRGCSNLKN 173 (785)
Q Consensus 111 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~---~l~~L~~L~ls~~~~l~~ 173 (785)
..++.+|.+++.+..+--+.+.+++.++.|.+.+|......--.. -.++|+.|++++|+.+++
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD 166 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence 357888888877766666778888888888888887665322111 467899999999987664
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.74 E-value=0.22 Score=46.88 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=20.5
Q ss_pred CCCCcEEEeccccCCCc-CCcccCCcccchhhhccC
Q 003936 409 FKSLTSLEIIDCKKLER-LPDELGNLEALEELRVEG 443 (785)
Q Consensus 409 l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~L~~ 443 (785)
.++|+.|++++|+-.+. --..+..+++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 46677777777754332 223455666677766655
No 86
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=84.12 E-value=0.79 Score=25.62 Aligned_cols=19 Identities=58% Similarity=1.001 Sum_probs=16.8
Q ss_pred CceEEEcCCCCcccccccc
Q 003936 66 NLVSLKMPGSKVTQLWDDV 84 (785)
Q Consensus 66 ~L~~L~L~~~~i~~l~~~~ 84 (785)
+|.+|+|.+++++++|++.
T Consensus 1 ~LVeL~m~~S~lekLW~G~ 19 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGV 19 (20)
T ss_pred CcEEEECCCCChHHhcCcc
Confidence 5889999999999999875
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.64 E-value=0.72 Score=27.68 Aligned_cols=18 Identities=50% Similarity=0.739 Sum_probs=14.3
Q ss_pred CCCCEEEcccCCCCCCCC
Q 003936 550 SSLVSLKLSNNNLERIPE 567 (785)
Q Consensus 550 ~~L~~L~L~~n~l~~lp~ 567 (785)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 367888888888888886
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.60 E-value=4.1 Score=24.59 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=9.4
Q ss_pred CCCCEEeCCCCCCCCC
Q 003936 573 SSLKYLDLFENNLDRI 588 (785)
Q Consensus 573 ~~L~~L~l~~n~l~~l 588 (785)
++|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566666666665544
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=69.03 E-value=1.1 Score=26.24 Aligned_cols=14 Identities=43% Similarity=0.420 Sum_probs=6.2
Q ss_pred cccceeccccccCc
Q 003936 111 QNLEILDLGYCSSL 124 (785)
Q Consensus 111 ~~L~~L~Ls~n~~~ 124 (785)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45555555555533
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=53.58 E-value=11 Score=22.52 Aligned_cols=15 Identities=27% Similarity=0.321 Sum_probs=11.0
Q ss_pred CCCCCEEeCCCCC-CC
Q 003936 572 LSSLKYLDLFENN-LD 586 (785)
Q Consensus 572 l~~L~~L~l~~n~-l~ 586 (785)
+++|+.|+|++|+ ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3578888888887 65
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.47 E-value=4 Score=44.67 Aligned_cols=64 Identities=22% Similarity=0.162 Sum_probs=34.3
Q ss_pred ccccCceEEEcCCCCcccccc---cccCCCCCcEEecCCCccc-cCCCCCc--cccccceeccccccCcc
Q 003936 62 LHWENLVSLKMPGSKVTQLWD---DVQNLVSLKRIDLKYSKLL-TKLPDLS--LAQNLEILDLGYCSSLT 125 (785)
Q Consensus 62 ~~l~~L~~L~L~~~~i~~l~~---~~~~l~~L~~L~Ls~n~~~-~~~~~l~--~l~~L~~L~Ls~n~~~~ 125 (785)
.+.+.+..+.|++|++.++-. --...++|+.|+|++|... ...+++. +...|++|-+.||.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 455667777777777665521 1245677777777777211 1111222 22346666666666443
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=45.60 E-value=17 Score=22.26 Aligned_cols=12 Identities=67% Similarity=0.764 Sum_probs=5.9
Q ss_pred CCCEEEcccCCC
Q 003936 551 SLVSLKLSNNNL 562 (785)
Q Consensus 551 ~L~~L~L~~n~l 562 (785)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 445555555544
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=37.01 E-value=18 Score=39.89 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=45.7
Q ss_pred CceEEEEecCCCCccccc-----ccccCceEEEcCCC--Cccccccc-ccCCCCCcEEecCCCccccCC
Q 003936 44 TELRYFEWHQFPLKTLNI-----LHWENLVSLKMPGS--KVTQLWDD-VQNLVSLKRIDLKYSKLLTKL 104 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-----~~l~~L~~L~L~~~--~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~ 104 (785)
+.+..+.+++|++..|.. ...++|..|+|++| .+...++- =-+...|+.|-+.+|.+.+..
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 788999999998876655 66789999999999 55543321 123467899999999876653
Done!