Query 003936
Match_columns 785
No_of_seqs 721 out of 4414
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 08:49:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003936.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003936hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.7E-54 5.8E-59 512.3 27.7 559 13-591 94-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 6.3E-53 2.1E-57 498.9 29.6 532 45-592 51-700 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-47 5.5E-52 448.7 42.6 542 22-591 7-602 (680)
4 3vq2_A TLR4, TOLL-like recepto 100.0 2.5E-46 8.7E-51 432.6 34.2 522 21-615 13-559 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 4.2E-45 1.4E-49 428.3 39.0 537 19-586 25-622 (680)
6 3t6q_A CD180 antigen; protein- 100.0 2.2E-45 7.4E-50 424.9 35.7 498 23-590 16-540 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 3.9E-44 1.3E-48 414.3 33.2 503 19-587 32-559 (606)
8 3t6q_A CD180 antigen; protein- 100.0 2.5E-43 8.6E-48 407.5 34.1 475 46-589 14-516 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 3.8E-41 1.3E-45 402.4 38.3 512 23-586 8-560 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 5.1E-41 1.7E-45 401.2 35.7 516 47-616 7-562 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 3.2E-41 1.1E-45 387.2 31.2 492 22-586 10-531 (570)
12 4eco_A Uncharacterized protein 100.0 3.8E-40 1.3E-44 380.6 29.0 266 284-589 306-603 (636)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.3E-39 4.3E-44 372.0 27.0 449 49-589 10-489 (549)
14 4eco_A Uncharacterized protein 100.0 4.2E-40 1.4E-44 380.2 22.4 351 98-565 193-602 (636)
15 2z81_A CD282 antigen, TOLL-lik 100.0 3E-39 1E-43 368.8 26.5 456 19-586 26-510 (549)
16 4ecn_A Leucine-rich repeat pro 100.0 9.1E-39 3.1E-43 374.6 30.5 414 65-589 323-843 (876)
17 2z63_A TOLL-like receptor 4, v 100.0 5.9E-39 2E-43 368.3 28.3 476 19-564 28-532 (570)
18 2z7x_B TOLL-like receptor 1, v 100.0 7.3E-39 2.5E-43 362.9 27.0 437 22-586 3-481 (520)
19 4ecn_A Leucine-rich repeat pro 100.0 2.5E-38 8.6E-43 370.8 24.3 427 44-584 323-862 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 2.1E-38 7E-43 359.2 19.8 443 47-611 3-478 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 2.3E-36 7.8E-41 351.6 31.9 515 35-616 44-582 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.6E-36 1.2E-40 343.7 26.2 222 307-586 276-510 (562)
23 1jl5_A Outer protein YOPM; leu 100.0 4.9E-36 1.7E-40 331.0 20.8 395 63-606 9-421 (454)
24 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-34 8.6E-39 334.4 31.0 498 19-586 52-580 (635)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.7E-35 9.3E-40 336.4 22.4 448 44-615 31-511 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 5.5E-33 1.9E-37 309.2 28.6 374 47-586 13-408 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 2E-33 6.8E-38 310.1 21.9 376 81-605 5-381 (454)
28 1o6v_A Internalin A; bacterial 100.0 8.5E-33 2.9E-37 308.0 26.7 219 305-591 175-393 (466)
29 1o6v_A Internalin A; bacterial 100.0 1.9E-31 6.6E-36 297.0 27.2 347 44-568 46-393 (466)
30 3v47_A TOLL-like receptor 5B a 100.0 1.1E-30 3.7E-35 290.7 29.2 370 22-450 13-412 (455)
31 3bz5_A Internalin-J, INLJ; leu 100.0 3E-31 1E-35 293.0 22.5 222 44-364 42-264 (457)
32 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-30 4.6E-35 287.7 21.4 99 62-168 39-137 (457)
33 4fmz_A Internalin; leucine ric 100.0 1.2E-29 4.2E-34 271.4 23.9 103 480-586 243-346 (347)
34 4fmz_A Internalin; leucine ric 100.0 2.1E-29 7.2E-34 269.6 24.1 102 44-149 44-146 (347)
35 2id5_A Lingo-1, leucine rich r 100.0 3.8E-29 1.3E-33 279.8 22.6 85 480-564 248-334 (477)
36 2id5_A Lingo-1, leucine rich r 100.0 8.2E-29 2.8E-33 277.1 24.8 108 480-587 224-334 (477)
37 3o6n_A APL1; leucine-rich repe 100.0 8.3E-29 2.8E-33 269.3 21.7 260 282-586 92-352 (390)
38 3oja_B Anopheles plasmodium-re 100.0 5.3E-28 1.8E-32 277.6 22.4 260 282-586 98-358 (597)
39 3o6n_A APL1; leucine-rich repe 100.0 6.2E-28 2.1E-32 262.4 21.8 106 62-168 42-151 (390)
40 3oja_B Anopheles plasmodium-re 100.0 2.3E-27 7.8E-32 272.3 23.6 82 480-564 278-359 (597)
41 2ft3_A Biglycan; proteoglycan, 99.9 3.6E-26 1.2E-30 242.6 21.1 155 406-586 143-307 (332)
42 1ogq_A PGIP-2, polygalacturona 99.9 3.1E-27 1.1E-31 248.1 12.2 250 283-589 50-308 (313)
43 1xku_A Decorin; proteoglycan, 99.9 1.6E-25 5.5E-30 237.4 22.2 156 406-586 141-306 (330)
44 1xku_A Decorin; proteoglycan, 99.9 5E-25 1.7E-29 233.7 24.4 282 19-365 31-330 (330)
45 2ft3_A Biglycan; proteoglycan, 99.9 4.1E-25 1.4E-29 234.4 23.7 281 20-365 34-331 (332)
46 1z7x_W Ribonuclease inhibitor; 99.9 1.8E-28 6E-33 273.3 -2.8 107 480-586 313-440 (461)
47 4fcg_A Uncharacterized protein 99.9 2.9E-25 9.9E-30 234.5 18.6 225 307-589 81-317 (328)
48 1z7x_W Ribonuclease inhibitor; 99.9 2.8E-28 9.7E-33 271.7 -5.7 161 404-587 221-412 (461)
49 1ogq_A PGIP-2, polygalacturona 99.9 9.7E-26 3.3E-30 236.7 13.7 229 307-591 50-287 (313)
50 3ogk_B Coronatine-insensitive 99.9 6.7E-27 2.3E-31 269.3 1.1 229 86-362 110-350 (592)
51 4fcg_A Uncharacterized protein 99.9 1.8E-24 6.3E-29 228.3 18.2 235 282-565 80-316 (328)
52 2z80_A TOLL-like receptor 2, v 99.9 2.7E-23 9.4E-28 222.4 18.7 215 301-588 94-316 (353)
53 2z66_A Variable lymphocyte rec 99.9 2.9E-23 1E-27 217.5 18.0 233 297-586 20-261 (306)
54 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-22 5.3E-27 229.8 25.3 138 410-587 161-298 (622)
55 1wwl_A Monocyte differentiatio 99.9 9E-25 3.1E-29 229.4 6.2 245 282-587 42-310 (312)
56 2z80_A TOLL-like receptor 2, v 99.9 9.2E-24 3.2E-28 226.1 13.8 244 308-611 53-311 (353)
57 3ogk_B Coronatine-insensitive 99.9 2.9E-25 1E-29 255.6 0.6 156 12-168 66-253 (592)
58 2z66_A Variable lymphocyte rec 99.9 8.6E-23 2.9E-27 214.0 17.2 244 309-610 9-257 (306)
59 3g06_A SSPH2 (leucine-rich rep 99.9 6.8E-22 2.3E-26 224.5 25.3 78 480-564 221-298 (622)
60 3zyi_A Leucine-rich repeat-con 99.9 3.6E-22 1.2E-26 221.2 21.5 240 310-586 57-303 (452)
61 3zyj_A Leucine-rich repeat-con 99.9 4.6E-22 1.6E-26 219.5 21.5 239 310-585 46-291 (440)
62 1ozn_A Reticulon 4 receptor; N 99.9 4.9E-22 1.7E-26 205.9 19.2 219 310-586 14-238 (285)
63 2p1m_B Transport inhibitor res 99.9 3.9E-25 1.3E-29 254.7 -4.8 158 62-238 63-245 (594)
64 1wwl_A Monocyte differentiatio 99.9 3E-23 1E-27 217.8 9.4 203 306-564 94-310 (312)
65 3zyi_A Leucine-rich repeat-con 99.9 7.4E-22 2.5E-26 218.7 20.7 112 303-447 192-303 (452)
66 3o53_A Protein LRIM1, AGAP0063 99.9 3.2E-24 1.1E-28 225.8 0.9 218 303-586 30-250 (317)
67 3zyj_A Leucine-rich repeat-con 99.9 8E-22 2.7E-26 217.6 19.5 225 283-563 64-292 (440)
68 1ozn_A Reticulon 4 receptor; N 99.9 2E-22 6.9E-27 208.8 13.6 213 296-564 23-239 (285)
69 3o53_A Protein LRIM1, AGAP0063 99.9 4.3E-23 1.5E-27 217.1 8.6 231 308-608 11-244 (317)
70 2p1m_B Transport inhibitor res 99.9 1.8E-24 6.2E-29 249.1 -2.6 84 501-585 429-518 (594)
71 3oja_A Leucine-rich immune mol 99.9 3E-22 1E-26 223.0 12.3 221 305-591 32-257 (487)
72 3oja_A Leucine-rich immune mol 99.9 1.6E-22 5.5E-27 225.2 6.5 235 281-581 32-270 (487)
73 2z62_A TOLL-like receptor 4, v 99.8 8.2E-21 2.8E-25 195.6 16.5 159 406-586 72-237 (276)
74 1p9a_G Platelet glycoprotein I 99.8 1.5E-20 5.2E-25 194.4 17.8 201 303-586 6-208 (290)
75 2xwt_C Thyrotropin receptor; s 99.8 2.1E-20 7.3E-25 188.0 16.1 153 406-584 76-237 (239)
76 2z62_A TOLL-like receptor 4, v 99.8 2.2E-20 7.5E-25 192.4 16.6 210 297-564 20-238 (276)
77 2o6q_A Variable lymphocyte rec 99.8 2.6E-19 8.7E-24 183.6 21.4 199 308-586 17-218 (270)
78 1p9a_G Platelet glycoprotein I 99.8 1.5E-19 5E-24 187.0 16.6 185 400-616 23-210 (290)
79 1h6u_A Internalin H; cell adhe 99.8 3.3E-20 1.1E-24 193.9 11.7 155 406-591 81-235 (308)
80 1h6u_A Internalin H; cell adhe 99.8 2E-19 6.7E-24 188.0 14.7 200 303-569 37-236 (308)
81 4glp_A Monocyte differentiatio 99.8 2.9E-20 9.8E-25 194.9 8.4 155 408-586 143-307 (310)
82 4glp_A Monocyte differentiatio 99.8 2.3E-19 8E-24 187.9 14.9 205 306-564 90-308 (310)
83 2o6q_A Variable lymphocyte rec 99.8 1.8E-18 6.3E-23 177.2 18.5 180 410-615 37-219 (270)
84 3rfs_A Internalin B, repeat mo 99.8 1.9E-19 6.6E-24 184.7 9.3 106 480-585 109-217 (272)
85 3rfs_A Internalin B, repeat mo 99.8 6.2E-19 2.1E-23 180.9 13.1 158 406-591 81-241 (272)
86 2ca6_A RAN GTPase-activating p 99.8 1.6E-20 5.6E-25 203.5 1.3 183 407-589 91-319 (386)
87 4ay9_X Follicle-stimulating ho 99.8 9.4E-19 3.2E-23 186.6 14.6 237 47-364 12-256 (350)
88 2xwt_C Thyrotropin receptor; s 99.8 1.1E-18 3.8E-23 175.4 14.1 205 293-560 20-236 (239)
89 3goz_A Leucine-rich repeat-con 99.8 2.3E-20 8E-25 200.1 0.5 248 290-587 5-298 (362)
90 3m19_A Variable lymphocyte rec 99.8 6.2E-18 2.1E-22 171.2 16.5 165 399-587 26-193 (251)
91 4ay9_X Follicle-stimulating ho 99.8 5.8E-18 2E-22 180.5 16.3 224 310-591 12-242 (350)
92 2ast_B S-phase kinase-associat 99.8 2.4E-19 8E-24 190.5 5.3 100 67-168 49-152 (336)
93 2ca6_A RAN GTPase-activating p 99.8 7.1E-20 2.4E-24 198.4 0.5 138 410-566 159-319 (386)
94 3cvr_A Invasion plasmid antige 99.7 2E-17 6.7E-22 185.5 16.2 97 480-586 140-243 (571)
95 2ast_B S-phase kinase-associat 99.7 3.4E-19 1.2E-23 189.3 1.7 241 285-587 49-307 (336)
96 3cvr_A Invasion plasmid antige 99.7 2.7E-17 9.3E-22 184.3 15.9 197 12-229 47-255 (571)
97 3m19_A Variable lymphocyte rec 99.7 6.4E-17 2.2E-21 163.7 16.2 179 307-565 14-194 (251)
98 1h6t_A Internalin B; cell adhe 99.7 8.6E-18 2.9E-22 173.9 9.8 154 406-590 64-217 (291)
99 3goz_A Leucine-rich repeat-con 99.7 3.6E-19 1.2E-23 190.8 -1.7 252 266-564 5-298 (362)
100 1h6t_A Internalin B; cell adhe 99.7 3.5E-17 1.2E-21 169.3 11.1 132 406-567 86-217 (291)
101 1dce_A Protein (RAB geranylger 99.7 4.2E-19 1.4E-23 200.2 -4.0 203 304-591 346-551 (567)
102 1m9s_A Internalin B; cell inva 99.7 7.6E-17 2.6E-21 182.9 10.4 193 306-565 20-212 (605)
103 4ezg_A Putative uncharacterize 99.7 1.1E-16 3.9E-21 155.3 10.0 152 407-586 41-194 (197)
104 3e6j_A Variable lymphocyte rec 99.6 1.3E-15 4.3E-20 151.6 13.3 111 476-586 60-172 (229)
105 1m9s_A Internalin B; cell inva 99.6 5E-16 1.7E-20 176.2 11.3 175 303-543 39-213 (605)
106 2o6s_A Variable lymphocyte rec 99.6 2.4E-15 8.3E-20 147.4 14.6 168 413-605 10-187 (208)
107 2o6s_A Variable lymphocyte rec 99.6 2.4E-15 8.2E-20 147.4 13.4 174 22-229 10-190 (208)
108 2v9t_B SLIT homolog 2 protein 99.6 2.2E-15 7.5E-20 148.8 13.0 111 476-586 52-165 (220)
109 2v70_A SLIT-2, SLIT homolog 2 99.6 2.5E-15 8.4E-20 148.4 12.6 150 413-586 14-166 (220)
110 1dce_A Protein (RAB geranylger 99.6 4.4E-17 1.5E-21 183.8 -0.3 99 480-580 463-567 (567)
111 3e6j_A Variable lymphocyte rec 99.6 5.3E-15 1.8E-19 147.1 13.7 142 399-564 31-173 (229)
112 2xot_A Amphoterin-induced prot 99.6 1.6E-15 5.6E-20 162.1 10.5 110 480-589 64-179 (361)
113 1xeu_A Internalin C; cellular 99.6 1.8E-15 6E-20 153.9 10.0 154 405-590 36-189 (263)
114 4ezg_A Putative uncharacterize 99.6 1.4E-15 4.9E-20 147.5 8.9 149 44-217 44-194 (197)
115 1xeu_A Internalin C; cellular 99.6 1.6E-15 5.6E-20 154.1 8.4 131 406-567 59-189 (263)
116 2ell_A Acidic leucine-rich nuc 99.6 2.3E-15 7.9E-20 142.0 8.8 109 480-590 49-164 (168)
117 2ell_A Acidic leucine-rich nuc 99.6 3.8E-15 1.3E-19 140.5 8.9 138 408-569 22-166 (168)
118 2v9t_B SLIT homolog 2 protein 99.6 1.2E-14 4.1E-19 143.5 12.5 132 410-564 32-166 (220)
119 2xot_A Amphoterin-induced prot 99.6 1E-14 3.4E-19 156.0 12.5 171 413-586 21-202 (361)
120 2v70_A SLIT-2, SLIT homolog 2 99.5 3.9E-14 1.4E-18 139.8 13.3 144 22-169 14-164 (220)
121 4b8c_D Glucose-repressible alc 99.5 4.1E-14 1.4E-18 164.7 9.9 137 471-608 215-366 (727)
122 1a9n_A U2A', U2A'; complex (nu 99.5 2.4E-14 8.3E-19 136.0 6.5 105 480-586 42-153 (176)
123 1w8a_A SLIT protein; signaling 99.5 1.5E-13 5.1E-18 132.5 11.6 107 480-586 29-139 (192)
124 2je0_A Acidic leucine-rich nuc 99.5 2.1E-14 7.2E-19 132.4 5.4 82 500-581 60-148 (149)
125 2je0_A Acidic leucine-rich nuc 99.4 3.3E-14 1.1E-18 131.0 4.6 128 408-559 15-149 (149)
126 4b8c_D Glucose-repressible alc 99.4 8.4E-14 2.9E-18 162.1 9.0 152 298-490 215-369 (727)
127 2wfh_A SLIT homolog 2 protein 99.4 4.2E-13 1.4E-17 129.3 11.7 106 480-586 31-139 (193)
128 2o6r_A Variable lymphocyte rec 99.4 7.5E-13 2.6E-17 125.8 12.3 109 480-588 28-139 (177)
129 1w8a_A SLIT protein; signaling 99.4 7.8E-13 2.7E-17 127.4 11.1 123 47-169 11-137 (192)
130 2wfh_A SLIT homolog 2 protein 99.4 1.2E-12 4.2E-17 126.0 12.1 122 47-169 13-137 (193)
131 1ds9_A Outer arm dynein; leuci 99.4 3.3E-15 1.1E-19 145.0 -7.0 147 407-579 15-180 (198)
132 3sb4_A Hypothetical leucine ri 99.4 1.2E-12 4.2E-17 137.9 10.0 98 480-579 226-327 (329)
133 1a9n_A U2A', U2A'; complex (nu 99.4 4.6E-13 1.6E-17 127.2 5.7 134 406-564 15-154 (176)
134 3sb4_A Hypothetical leucine ri 99.3 7.2E-13 2.4E-17 139.7 5.6 88 502-591 224-315 (329)
135 1ds9_A Outer arm dynein; leuci 99.3 3.8E-14 1.3E-18 137.5 -4.8 136 399-563 37-185 (198)
136 2o6r_A Variable lymphocyte rec 99.3 2.8E-11 9.6E-16 114.9 11.8 123 46-169 9-135 (177)
137 2r9u_A Variable lymphocyte rec 99.2 3.7E-11 1.3E-15 113.4 11.9 106 482-590 14-122 (174)
138 4fdw_A Leucine rich hypothetic 99.2 2.4E-10 8.2E-15 123.0 19.0 222 303-590 132-362 (401)
139 3g39_A Variable lymphocyte rec 99.2 7E-11 2.4E-15 111.1 11.4 106 481-589 10-118 (170)
140 2r9u_A Variable lymphocyte rec 99.2 3.3E-11 1.1E-15 113.7 8.9 90 480-569 33-124 (174)
141 3g39_A Variable lymphocyte rec 99.2 4E-11 1.4E-15 112.8 9.0 106 436-566 11-118 (170)
142 4fdw_A Leucine rich hypothetic 99.1 1E-09 3.5E-14 118.1 18.7 199 301-585 174-382 (401)
143 4fs7_A Uncharacterized protein 99.0 5.5E-09 1.9E-13 112.8 19.2 96 478-577 295-392 (394)
144 3un9_A NLR family member X1; l 99.0 1.2E-11 4E-16 131.9 -2.0 156 409-587 71-253 (372)
145 4fs7_A Uncharacterized protein 99.0 7.7E-09 2.6E-13 111.6 18.9 304 8-364 60-376 (394)
146 2ifg_A High affinity nerve gro 98.9 2.8E-09 9.6E-14 113.0 11.7 106 484-590 12-120 (347)
147 2ifg_A High affinity nerve gro 98.9 5.2E-09 1.8E-13 110.9 9.8 92 472-564 24-117 (347)
148 3un9_A NLR family member X1; l 98.7 8.2E-10 2.8E-14 117.6 -1.8 165 44-226 72-261 (372)
149 2ra8_A Uncharacterized protein 98.6 8.4E-09 2.9E-13 108.8 1.0 108 479-586 192-320 (362)
150 4gt6_A Cell surface protein; l 98.5 3E-06 1E-10 91.2 19.6 106 8-120 52-169 (394)
151 4gt6_A Cell surface protein; l 98.4 1E-05 3.5E-10 86.9 20.6 106 475-584 260-368 (394)
152 2ra8_A Uncharacterized protein 98.4 1.3E-07 4.4E-12 99.7 4.2 82 280-363 136-228 (362)
153 4h09_A Hypothetical leucine ri 98.3 4.6E-05 1.6E-09 81.4 21.1 101 478-581 238-341 (379)
154 1io0_A Tropomodulin; LRR prote 98.2 3E-07 1E-11 87.3 0.6 108 479-586 35-164 (185)
155 4h09_A Hypothetical leucine ri 98.1 0.00012 4.3E-09 78.0 19.3 79 282-363 262-342 (379)
156 1io0_A Tropomodulin; LRR prote 98.0 9.2E-07 3.2E-11 83.9 -0.1 61 503-563 92-164 (185)
157 3e4g_A ATP synthase subunit S, 97.9 3.3E-06 1.1E-10 77.9 3.1 87 64-150 60-154 (176)
158 3rw6_A Nuclear RNA export fact 97.9 4.4E-06 1.5E-10 83.3 3.6 58 521-579 190-257 (267)
159 3rw6_A Nuclear RNA export fact 97.8 5.1E-06 1.7E-10 82.8 2.7 65 86-152 168-237 (267)
160 3e4g_A ATP synthase subunit S, 97.8 4.2E-06 1.4E-10 77.2 1.6 95 79-173 52-154 (176)
161 1pgv_A TMD-1, tropomodulin TMD 96.5 0.00051 1.8E-08 64.5 0.9 105 480-584 41-168 (197)
162 3rfe_A Platelet glycoprotein I 96.3 0.0057 2E-07 53.5 6.3 54 531-586 12-68 (130)
163 3rfe_A Platelet glycoprotein I 96.1 0.0066 2.3E-07 53.1 5.6 52 48-99 12-66 (130)
164 1pgv_A TMD-1, tropomodulin TMD 95.9 0.0029 9.9E-08 59.4 2.4 86 500-585 37-138 (197)
165 2lz0_A Uncharacterized protein 22.0 44 0.0015 26.9 2.2 45 7-55 8-54 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.7e-54 Score=512.33 Aligned_cols=559 Identities=18% Similarity=0.214 Sum_probs=372.0
Q ss_pred HHHhcccccceeeeecCCCccccccCC--CCCC-CceEEEEecCCCCc-cccc---ccccCceEEEcCCCCcccc-ccc-
Q 003936 13 YTFSKMTELRLLKFCGSKNKCMVHSLE--GVPF-TELRYFEWHQFPLK-TLNI---LHWENLVSLKMPGSKVTQL-WDD- 83 (785)
Q Consensus 13 ~~f~~l~~Lr~L~l~~~~~~~~~~~~~--~~~~-~~L~~L~l~~~~l~-~lp~---~~l~~L~~L~L~~~~i~~l-~~~- 83 (785)
..|.++++||+|++++|.+.+ .+|. .+.. ++|++|++++|.+. .+|. ..+++|++|++++|.++.. +..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 171 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSG--PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEE--EGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred hhhccCCCCCEEECCCCcCCC--cCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhh
Confidence 456777777777777777642 2444 5555 77788888777765 3333 4677788888888877744 333
Q ss_pred --ccCCCCCcEEecCCCccccCCCCCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccc
Q 003936 84 --VQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYL 160 (785)
Q Consensus 84 --~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L 160 (785)
+.++++|++|++++|.+....+ +..+++|++|++++|.+.+.+|. ++++++|++|++++|...+.+|..+ .+++|
T Consensus 172 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 249 (768)
T 3rgz_A 172 VLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTEL 249 (768)
T ss_dssp HHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSC
T ss_pred hhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCC
Confidence 6777888888888887654443 47788888888888887776666 8888888888888887777777777 78888
Q ss_pred cEEeccCCcCCCCCCCcccccccccccccccccc-ccCcchhcc-ccccceeccccccccccchhhhcccccccccccCC
Q 003936 161 KRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIE-ELPSSIKCL-SNIGELLIYSCKRLENISSSIFKLQFLESIRIHRC 238 (785)
Q Consensus 161 ~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~-~lp~~l~~l-~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (785)
++|++++|...+.+|.....+|+ +|++++|.+. .+|..+... ++|++|++++|.+.+.+|..++.+++|+.|+++++
T Consensus 250 ~~L~Ls~n~l~~~~~~~~l~~L~-~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n 328 (768)
T 3rgz_A 250 KLLNISSNQFVGPIPPLPLKSLQ-YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSN 328 (768)
T ss_dssp CEEECCSSCCEESCCCCCCTTCC-EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSS
T ss_pred CEEECCCCcccCccCccccCCCC-EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCC
Confidence 88888888766677766557788 8888888886 788887764 88889999888888888888888888888877653
Q ss_pred --------------CCCccccCCCcccCCCCCccC-----CcccccccCCCCCCCCCCCccC--CCCCcEEecccCCCCC
Q 003936 239 --------------PNLQFLEMPSCNIDGTRSKEQ-----PSSELKLKKCPRPESLPSGQCM--FKSLTSLEIIDCPNFE 297 (785)
Q Consensus 239 --------------~~L~~L~l~~n~~~~~~~~~~-----~~~~L~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~ 297 (785)
++|++|++++|.+++.....+ ....+++++|...+.+|..+.. +++|+.|++.+|...+
T Consensus 329 ~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 408 (768)
T 3rgz_A 329 NFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408 (768)
T ss_dssp EEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE
T ss_pred cccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcccc
Confidence 456666666666653322211 2233555566555555555444 5566666666665555
Q ss_pred CCCccccCccccceeeccCcccc-cCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCC-------C
Q 003936 298 RLPDELGNLQALNRLIIDGTAIR-ELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLK-------G 369 (785)
Q Consensus 298 ~lp~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-------~ 369 (785)
.+|..+.++++|++|++++|.++ .+|..++.+++|++|++++|.+.+.+|..+..+++|+.|++++|.... .
T Consensus 409 ~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~ 488 (768)
T 3rgz_A 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc
Confidence 56666666666666666666665 455556666666666666666666666666666666666666654221 1
Q ss_pred CCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc-c
Q 003936 370 FPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR-E 448 (785)
Q Consensus 370 lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~-~ 448 (785)
++.|+.+++++|.+. +.+|.+++.+++|+.|++++|.+.+.+|..++.+++|+.|++++|.++ .
T Consensus 489 l~~L~~L~L~~N~l~---------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 489 CTNLNWISLSNNRLT---------------GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CTTCCEEECCSSCCC---------------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB
T ss_pred CCCCCEEEccCCccC---------------CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc
Confidence 223333333333222 234444555555555555555555555555555555555555555554 4
Q ss_pred cChhhhhhh-hcccccccCC----------------------CCccCCccccCCCCCCEEEeeCCcCcccCCCccccccc
Q 003936 449 VPKSLAQLA-LSKLKLKKCS----------------------SFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEY 505 (785)
Q Consensus 449 lp~~~~~l~-L~~L~l~~~~----------------------~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 505 (785)
+|..+.... +..+.+.... ..+..+..+..++.++.+++..+...+.+|..++.+++
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 554443321 1111111100 01111222223334444455556666777888888999
Q ss_pred cceEEecCeecc-ccCcccCCCCCCcEEEccCCcccc-ccccccCCCCCCEEEcccCCCCC-CCCcCcCCCCCCEEeCCC
Q 003936 506 LKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQI-IPESLNQLSSLVSLKLSNNNLER-IPERLDPLSSLKYLDLFE 582 (785)
Q Consensus 506 L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~l~~ 582 (785)
|+.|++++|.++ .+|..++.+++|+.|+|++|++++ +|..++.+++|+.|+|++|++++ +|..+..+++|++|++++
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCS
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcC
Confidence 999999999998 679999999999999999999984 89999999999999999999985 799999999999999999
Q ss_pred CCCC-CCccc
Q 003936 583 NNLD-RIPEY 591 (785)
Q Consensus 583 n~l~-~lp~~ 591 (785)
|+++ .+|+.
T Consensus 714 N~l~g~iP~~ 723 (768)
T 3rgz_A 714 NNLSGPIPEM 723 (768)
T ss_dssp SEEEEECCSS
T ss_pred CcccccCCCc
Confidence 9964 66653
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.3e-53 Score=498.93 Aligned_cols=532 Identities=22% Similarity=0.247 Sum_probs=290.8
Q ss_pred ceEEEEecCCCCcc----ccc--ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCC---CCccccccce
Q 003936 45 ELRYFEWHQFPLKT----LNI--LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLP---DLSLAQNLEI 115 (785)
Q Consensus 45 ~L~~L~l~~~~l~~----lp~--~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~---~l~~l~~L~~ 115 (785)
+++.|+++++.+.. +|. ..+++|+.++++.+.+..+|.+++.+++|++|+|++|.+...+| .++.+++|++
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 130 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCE
T ss_pred cEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCE
Confidence 44455555544432 333 44445555555554444444445555555555555554433332 2444455555
Q ss_pred eccccccCcccccccc-ccCCcccEEecCCCCCCCcCCCc---c-ccccccEEeccCCcCCCCCCCcccccccccccccc
Q 003936 116 LDLGYCSSLTETHSSI-QYLNKLEVLDLDRCKSLTSLPTS---I-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLG 190 (785)
Q Consensus 116 L~Ls~n~~~~~~~~~l-~~l~~L~~L~L~~~~~~~~~p~~---~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~ 190 (785)
|+|++|.+.+..|..+ .++++|++|++++|...+..|.. + ++++|++|++++|......|.....+|+ +|++++
T Consensus 131 L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~-~L~Ls~ 209 (768)
T 3rgz_A 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE-FLDVSS 209 (768)
T ss_dssp EECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCC-EEECCS
T ss_pred EECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCC-EEECcC
Confidence 5555554444444333 44455555555554433333332 2 4444555555554433333322223444 555555
Q ss_pred ccccccCcchhccccccceeccccccccccchhhhcccccccccccCC-----------CCCccccCCCcccCCCCCccC
Q 003936 191 VGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRC-----------PNLQFLEMPSCNIDGTRSKEQ 259 (785)
Q Consensus 191 ~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~-----------~~L~~L~l~~n~~~~~~~~~~ 259 (785)
|.+...+..++++++|++|++++|.+.+..|..+..+++|+.|++++| ++|++|++++|.+++.....+
T Consensus 210 n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~ 289 (768)
T 3rgz_A 210 NNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFL 289 (768)
T ss_dssp SCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCS
T ss_pred CcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHH
Confidence 554433333555555555555555555555555555555555544443 344445555554443222111
Q ss_pred -----CcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCcc-ccCccccceeeccCcccc-cCCccccCcc-c
Q 003936 260 -----PSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDE-LGNLQALNRLIIDGTAIR-ELPEGLGQLA-L 331 (785)
Q Consensus 260 -----~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~-l~~l~~L~~L~L~~n~i~-~lp~~l~~l~-~ 331 (785)
....+++++|...+.+|..++.+++|++|++.+|...+.+|.. +..+++|++|++++|.++ .+|..+..++ +
T Consensus 290 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~ 369 (768)
T 3rgz_A 290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369 (768)
T ss_dssp CTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTT
T ss_pred HhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcC
Confidence 1122444444444444444444455555555444444344433 444455555555554444 4444444443 4
Q ss_pred cceecccCccCCccccccccC--CCCCCEEEeeCCC-------CCCCCCCCceeccCCCCCcccCccccccCCCCCCccC
Q 003936 332 LSKLELKNCSELEYISSSIFK--LKSVESIEISNCS-------NLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESL 402 (785)
Q Consensus 332 L~~L~l~~~~~~~~~~~~~~~--l~~L~~L~l~~~~-------~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l 402 (785)
|++|++++|.+.+.+|..+.. +++|+.|++++|. .+..++.|+.+++++|.+. +.+
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~---------------~~~ 434 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS---------------GTI 434 (768)
T ss_dssp CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE---------------SCC
T ss_pred CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc---------------Ccc
Confidence 555555554444444444433 4444555544443 1222334444444444433 344
Q ss_pred CccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc-ccChhhhhhh-hcccccccCCCCccCCccccCCC
Q 003936 403 PSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR-EVPKSLAQLA-LSKLKLKKCSSFESLPSRLYVSK 480 (785)
Q Consensus 403 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~~~~l~-L~~L~l~~~~~~~~lp~~~~~~~ 480 (785)
|..++.+++|+.|++++|.+.+.+|..+..+++|++|++++|.++ .+|..+..+. |+.|++++|...+.+|..+..++
T Consensus 435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 555666666666666666666666666666666666666666666 4555555544 66666666666666666666666
Q ss_pred CCCEEEeeCCcCcccCCCccccccccceEEecCeecc-ccC---------------------------------------
Q 003936 481 SLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR-EVP--------------------------------------- 520 (785)
Q Consensus 481 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp--------------------------------------- 520 (785)
+|++|++++|++.+.+|..++.+++|+.|++++|.++ .+|
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence 6666666666666666666666666666666666554 333
Q ss_pred -------------------------------cccCCCCCCcEEEccCCcccc-ccccccCCCCCCEEEcccCCCCC-CCC
Q 003936 521 -------------------------------ESLGQLSSLEWLVLSDNNLQI-IPESLNQLSSLVSLKLSNNNLER-IPE 567 (785)
Q Consensus 521 -------------------------------~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~-lp~ 567 (785)
..++.+++|+.|||++|++++ +|..++.+++|+.|+|++|++++ +|+
T Consensus 595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~ 674 (768)
T 3rgz_A 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674 (768)
T ss_dssp ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence 345557889999999999985 88999999999999999999985 899
Q ss_pred cCcCCCCCCEEeCCCCCCC-CCcccc
Q 003936 568 RLDPLSSLKYLDLFENNLD-RIPEYL 592 (785)
Q Consensus 568 ~l~~l~~L~~L~l~~n~l~-~lp~~~ 592 (785)
.++.+++|++||+++|+++ .+|+.+
T Consensus 675 ~l~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 675 EVGDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp GGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred HHhCCCCCCEEECCCCcccCcCChHH
Confidence 9999999999999999976 666553
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-47 Score=448.72 Aligned_cols=542 Identities=18% Similarity=0.194 Sum_probs=410.7
Q ss_pred ceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcccc-cccccCCCCCcEEecCC
Q 003936 22 RLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKY 97 (785)
Q Consensus 22 r~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~ 97 (785)
+.++.+++++ ..+|..+. +++++|++++|.++.++. ..+++|++|++++|.++.+ |..+.++++|++|+|++
T Consensus 7 ~~~~cs~~~L---~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 7 EVADCSHLKL---TQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp SEEECCSSCC---SSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CeeECCCCCc---cccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 4577777766 56776654 789999999999988876 7788999999999998876 55688899999999999
Q ss_pred CccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCC
Q 003936 98 SKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLP 175 (785)
Q Consensus 98 n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp 175 (785)
|.+....+ .|..+++|++|++++|.+.+..|..|+++++|++|++++|...+..|..+ ++++|++|++++|......+
T Consensus 83 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 83 NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred CccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 97665444 48899999999999998766666788999999999999987766666666 78899999998874322222
Q ss_pred Ccc----ccccccccccccccccccC-cchhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcc
Q 003936 176 KMT----SCHLRSTLPLLGVGIEELP-SSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCN 250 (785)
Q Consensus 176 ~~~----~~~L~~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~ 250 (785)
... ..+|+ .+++++|.+..++ ..+..+++|+.|++.++.+.......+... -..++|+.+++++|.
T Consensus 163 ~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~--------l~~~~L~~L~L~~n~ 233 (680)
T 1ziw_A 163 EELDIFANSSLK-KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLE--------LANTSIRNLSLSNSQ 233 (680)
T ss_dssp HHHGGGTTCEES-EEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHH--------HTTSCCCEEECTTSC
T ss_pred HHhhcccccccc-EEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHH--------hhhccccEEEccCCc
Confidence 211 13455 6666666665443 345556666666666555443222111100 012456666677776
Q ss_pred cCCCCCccCC------cccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccc----
Q 003936 251 IDGTRSKEQP------SSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIR---- 320 (785)
Q Consensus 251 ~~~~~~~~~~------~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~---- 320 (785)
+.+.....+. ...+++++|...+..+..++.+++|+.|++.+|...+..|..+.++++|++|+++++...
T Consensus 234 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 313 (680)
T 1ziw_A 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313 (680)
T ss_dssp CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---
T ss_pred ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc
Confidence 6554333221 344777888777777777888899999999988877777888889999999999876443
Q ss_pred --cCCc----cccCccccceecccCccCCccccccccCCCCCCEEEeeCCCC-CCCC----------CCCceeccCCCCC
Q 003936 321 --ELPE----GLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSN-LKGF----------PEIPFCNIDGSGI 383 (785)
Q Consensus 321 --~lp~----~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l~~l----------p~l~~l~l~~~~i 383 (785)
.+|. .++.+++|++|++++|.+.+..+..+.++++|+.|++++|.. +..+ +.++.+++++|.+
T Consensus 314 ~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l 393 (680)
T 1ziw_A 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393 (680)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred cccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence 3443 577888999999999988888888888899999999988751 2111 3566666666655
Q ss_pred cccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCC-cccCCcccchhhhccCccccccCh-hhhhhh-hcc
Q 003936 384 ERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLP-DELGNLEALEELRVEGTGIREVPK-SLAQLA-LSK 460 (785)
Q Consensus 384 ~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~-L~~ 460 (785)
..+ .|..+..+++|+.|++++|.+.+.+| ..+..+++|++|++++|.++.++. .+..+. ++.
T Consensus 394 ~~~---------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~ 458 (680)
T 1ziw_A 394 SKI---------------ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458 (680)
T ss_dssp CEE---------------CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCE
T ss_pred CeE---------------ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCccccc
Confidence 433 34567788999999999999887766 678999999999999999886653 444443 899
Q ss_pred cccccCCCC--ccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc---------ccCCCCCC
Q 003936 461 LKLKKCSSF--ESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE---------SLGQLSSL 529 (785)
Q Consensus 461 L~l~~~~~~--~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~---------~~~~l~~L 529 (785)
|++.+|... +.+|..+..+++|+.|++++|++.+..+..+.++++|+.|++++|.++.++. .+.++++|
T Consensus 459 L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L 538 (680)
T 1ziw_A 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538 (680)
T ss_dssp EECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred chhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCC
Confidence 999988754 6788899999999999999999988888889999999999999999987632 37889999
Q ss_pred cEEEccCCccccccc-cccCCCCCCEEEcccCCCCCCCCc-CcCCCCCCEEeCCCCCCCCCccc
Q 003936 530 EWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 530 ~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~lp~~ 591 (785)
++|+|++|+++.+|. .|.++++|+.|++++|+++.+|.. +..+++|+.|++++|+++.+|+.
T Consensus 539 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 602 (680)
T 1ziw_A 539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred CEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence 999999999999986 589999999999999999998765 57899999999999999888753
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.5e-46 Score=432.63 Aligned_cols=522 Identities=17% Similarity=0.163 Sum_probs=372.3
Q ss_pred cceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcccc-cccccCCCCCcEEecC
Q 003936 21 LRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLK 96 (785)
Q Consensus 21 Lr~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls 96 (785)
.++++.+++.+ ..+|.++. +++++|++++|.++.++. ..+++|++|++++|.++.+ |..|.++++|++|+|+
T Consensus 13 ~~~~~c~~~~l---~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 13 NITYQCMDQKL---SKVPDDIP-SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTEEECTTSCC---SSCCTTSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCceEccCCCc---ccCCCCCC-CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 35678888777 67787665 789999999999998876 7899999999999999987 5568999999999999
Q ss_pred CCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCC-cCCCcc-ccccccEEeccCCcCCCC
Q 003936 97 YSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLT-SLPTSI-HSKYLKRLVLRGCSNLKN 173 (785)
Q Consensus 97 ~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~p~~~-~l~~L~~L~ls~~~~l~~ 173 (785)
+|.+....| .++.+++|++|++++|.+.+..+..++++++|++|++++|...+ .+|..+ ++++|++|++++|.....
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 999877767 59999999999999998777666889999999999999987665 678888 899999999999854443
Q ss_pred CCCccc--cc----cccccccccccccccCcchhccccccceeccccccc-cccchhhhcccccccccccCC--CCCccc
Q 003936 174 LPKMTS--CH----LRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRL-ENISSSIFKLQFLESIRIHRC--PNLQFL 244 (785)
Q Consensus 174 lp~~~~--~~----L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~--~~L~~L 244 (785)
.|.... .+ +. .+++++|.++.++.......+|+.|++++|... ...+..+.+++.|+.+++... .....+
T Consensus 169 ~~~~~~~l~~L~~~l~-~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l 247 (606)
T 3vq2_A 169 TVNDLQFLRENPQVNL-SLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247 (606)
T ss_dssp CTTTTHHHHHCTTCCC-EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred Chhhhhhhhccccccc-eeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence 343332 22 33 799999999999988777779999999999876 456677788888777665421 111100
Q ss_pred cCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCC-CCCccccCccccceeeccCcccccCC
Q 003936 245 EMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFE-RLPDELGNLQALNRLIIDGTAIRELP 323 (785)
Q Consensus 245 ~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~lp~~l~~l~~L~~L~L~~n~i~~lp 323 (785)
.. . ....+.....+ .++.+.+..+..+. .+|. +..+++|+.|+++++.+..+|
T Consensus 248 ~~-------~-----------------~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~ 301 (606)
T 3vq2_A 248 EI-------F-----------------EPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE 301 (606)
T ss_dssp SC-------C-----------------CGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC
T ss_pred cc-------c-----------------ChHHhhhhhhc-cHhheeccccccccccccc-cccCCCCCEEEecCccchhhh
Confidence 00 0 00001111111 35555554444443 3444 777888888888888888877
Q ss_pred ccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCC
Q 003936 324 EGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLP 403 (785)
Q Consensus 324 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~ 403 (785)
.+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|......
T Consensus 302 -~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--------------------------------- 344 (606)
T 3vq2_A 302 -DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--------------------------------- 344 (606)
T ss_dssp -CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC---------------------------------
T ss_pred -hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch---------------------------------
Confidence 677888888888888877 6777 34 7888888888887522211
Q ss_pred ccccCCCCCcEEEeccccCCCc--CCcccCCcccchhhhccCccccccChhhhhhh-hcccccccCCCCccCC-ccccCC
Q 003936 404 SSLCMFKSLTSLEIIDCKKLER--LPDELGNLEALEELRVEGTGIREVPKSLAQLA-LSKLKLKKCSSFESLP-SRLYVS 479 (785)
Q Consensus 404 ~~~~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~-L~~L~l~~~~~~~~lp-~~~~~~ 479 (785)
.+..+++|+.|++++|.+.+. .|..+..+++|++|++++|.++.+|..+..+. |+.|++++|...+..| ..+..+
T Consensus 345 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 345 -KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp -CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred -hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 223445555555555554433 24445555555555555555555554444433 5555555555544444 455566
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccc--cCcccCCCCCCcEEEccCCccccc-cccccCCCCCCEEE
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIRE--VPESLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLK 556 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~ 556 (785)
++|++|++++|.+.+..|..+.++++|+.|++++|.++. +|..++.+++|++|++++|+++++ |..++.+++|+.|+
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 888888888888888888888888888888888888875 577788888888888888888774 46688888888888
Q ss_pred cccCCCCCC-CCcCcCCCCCCEEeCCCCCCCCCccccccCCCCCCcccccccceeeeccc
Q 003936 557 LSNNNLERI-PERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNC 615 (785)
Q Consensus 557 L~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~lp~~~~~~~~~ip~~l~~l~~~l~~~~C 615 (785)
+++|+++++ |..+..+++|++|++++|+++.+|+.+..+ |.+|+.++++-+...|
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l----~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHF----PKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGS----CTTCCEEECCSCCCCC
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhh----cccCcEEEccCCCccc
Confidence 888888875 777888888888888888888887654332 5567764443333333
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.2e-45 Score=428.26 Aligned_cols=537 Identities=16% Similarity=0.167 Sum_probs=415.6
Q ss_pred cccceeeeecCCCccccccCC-CCCC-CceEEEEecCCCCccccc---ccccCceEEEcCCCCcccccc-cccCCCCCcE
Q 003936 19 TELRLLKFCGSKNKCMVHSLE-GVPF-TELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLWD-DVQNLVSLKR 92 (785)
Q Consensus 19 ~~Lr~L~l~~~~~~~~~~~~~-~~~~-~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~ 92 (785)
+++++|++++|.+ ..++. .+.. ++|++|++++|.+..++. ..+++|++|++++|.++.+|. .|..+++|++
T Consensus 25 ~~l~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQL---RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCC---CCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCCCC---CCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 6899999999988 44554 3444 899999999999998755 789999999999999999987 4999999999
Q ss_pred EecCCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc---ccccccEEeccCC
Q 003936 93 IDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI---HSKYLKRLVLRGC 168 (785)
Q Consensus 93 L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~---~l~~L~~L~ls~~ 168 (785)
|+|++|.+....| .++.+++|++|++++|.+.+..|..++.+++|++|++++|...+..+..+ .+++|++|++++|
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTC
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCC
Confidence 9999998766655 58999999999999999888888889999999999999976555444433 4689999999998
Q ss_pred cCCCCCCCccc--cccccccccccccccc-----cCcchhccccccceeccccccccccchhhhcccc--cccccccCCC
Q 003936 169 SNLKNLPKMTS--CHLRSTLPLLGVGIEE-----LPSSIKCLSNIGELLIYSCKRLENISSSIFKLQF--LESIRIHRCP 239 (785)
Q Consensus 169 ~~l~~lp~~~~--~~L~~~L~l~~~~i~~-----lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~--L~~L~l~~~~ 239 (785)
......|.... .+++ .+.+.++.+.. ++..+ ..++|+.|++++|.+.+..+..+..++. |+.|++++
T Consensus 182 ~l~~~~~~~~~~l~~L~-~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~-- 257 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLF-GLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY-- 257 (680)
T ss_dssp CCCCBCTTGGGGSSEEC-EEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT--
T ss_pred cccccChhhhhhhhhhh-hhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCC--
Confidence 54444443332 4566 77777776542 11111 3488999999999998888887777654 66665554
Q ss_pred CCccccCCCcccCCCCCcc----CCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCC-----CCCc----cccCc
Q 003936 240 NLQFLEMPSCNIDGTRSKE----QPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFE-----RLPD----ELGNL 306 (785)
Q Consensus 240 ~L~~L~l~~n~~~~~~~~~----~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~lp~----~l~~l 306 (785)
|.+.+..... .....+++++|...+..|..+..+++|+.|++.++.... .+|. .+..+
T Consensus 258 ---------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l 328 (680)
T 1ziw_A 258 ---------NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL 328 (680)
T ss_dssp ---------SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC
T ss_pred ---------CCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC
Confidence 4443322111 122346777777777777778888888888888654322 3443 57788
Q ss_pred cccceeeccCcccccCCc-cccCccccceecccCccCCc-cccc-cccC--CCCCCEEEeeCCC-------CCCCCCCCc
Q 003936 307 QALNRLIIDGTAIRELPE-GLGQLALLSKLELKNCSELE-YISS-SIFK--LKSVESIEISNCS-------NLKGFPEIP 374 (785)
Q Consensus 307 ~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~-~~~~-~~~~--l~~L~~L~l~~~~-------~l~~lp~l~ 374 (785)
++|++|++++|.++.++. .+..+++|++|++++|.... .++. .+.. .++|+.|++++|. .+..+++++
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 888888888888886654 47888888888888876432 2222 2222 3578888888875 344566777
Q ss_pred eeccCCCCCcccCccccccCCCCCCccCC-ccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc---ccC
Q 003936 375 FCNIDGSGIERIPSSVLKLNKCSKLESLP-SSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR---EVP 450 (785)
Q Consensus 375 ~l~l~~~~i~~lp~~~l~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~---~lp 450 (785)
.+++++|.+.. .+| ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++ .+|
T Consensus 409 ~L~L~~N~l~~---------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p 473 (680)
T 1ziw_A 409 VLDLGLNEIGQ---------------ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473 (680)
T ss_dssp EEECCSSCCEE---------------ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred EEeCCCCcCcc---------------ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC
Confidence 88888876642 122 35678889999999999888888888899999999999999875 467
Q ss_pred hhhhhhh-hcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCC--------CccccccccceEEecCeeccccCc
Q 003936 451 KSLAQLA-LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLP--------DEIGNLEYLKVLTIKGTAIREVPE 521 (785)
Q Consensus 451 ~~~~~l~-L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~--------~~~~~l~~L~~L~L~~n~l~~lp~ 521 (785)
..+..+. |+.|++++|...+..+..+..+++|++|++++|.+.+..+ ..+.++++|+.|++++|.++.+|.
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 553 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence 7776665 8999999988777667778889999999999999876422 247889999999999999999975
Q ss_pred -ccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEcccCCCCCCCCc-Cc-CCCCCCEEeCCCCCCC
Q 003936 522 -SLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKLSNNNLERIPER-LD-PLSSLKYLDLFENNLD 586 (785)
Q Consensus 522 -~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~-l~-~l~~L~~L~l~~n~l~ 586 (785)
.|.++++|++|+|++|+++.+|.. +..+++|+.|++++|+++.++.. +. .+++|+.|++++|++.
T Consensus 554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~ 622 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622 (680)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCC
T ss_pred HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcc
Confidence 589999999999999999998865 78999999999999999998654 44 6899999999999865
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-45 Score=424.86 Aligned_cols=498 Identities=19% Similarity=0.167 Sum_probs=302.5
Q ss_pred eeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcccc-cccccCCCCCcEEecCCC
Q 003936 23 LLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKYS 98 (785)
Q Consensus 23 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~n 98 (785)
.++.++..+ ..+|..+. ..+++|++++|.++.++. ..+++|++|++++|.++.+ |..|.++++|++|+|++|
T Consensus 16 ~~~c~~~~l---~~iP~~l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 16 TYNCENLGL---NEIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp EEECTTSCC---SSCCTTSC-TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEECCCCCc---ccCcCCCC-CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 445444444 45555444 456777777777766643 6667777777777776655 455677777777777777
Q ss_pred ccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCC-cCCCccccccccEEeccCCcCCCCCCC
Q 003936 99 KLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLT-SLPTSIHSKYLKRLVLRGCSNLKNLPK 176 (785)
Q Consensus 99 ~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~p~~~~l~~L~~L~ls~~~~l~~lp~ 176 (785)
.+....| .++.+++|++|++++|.+.+..+..++.+++|++|++++|...+ ..|....+++|++|++++|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~------- 164 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA------- 164 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-------
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-------
Confidence 6655555 46677777777777776555545666777777777777755444 23444466667777766653
Q ss_pred cccccccccccccccccccc-Ccchhcccccc--ceeccccccccccchhhhcccccccccccCCCCCccc--cCCCccc
Q 003936 177 MTSCHLRSTLPLLGVGIEEL-PSSIKCLSNIG--ELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFL--EMPSCNI 251 (785)
Q Consensus 177 ~~~~~L~~~L~l~~~~i~~l-p~~l~~l~~L~--~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L--~l~~n~~ 251 (785)
+..+ |..++.+++|+ .|++++|.+.+..+..+.. ..|+.|+++++..+... .+....+
T Consensus 165 ----------------l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l 227 (606)
T 3t6q_A 165 ----------------IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTI 227 (606)
T ss_dssp ----------------CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEE
T ss_pred ----------------ccccChhhhhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccch
Confidence 3333 22344455555 4555555544444333322 34444444443211100 0000000
Q ss_pred CCCCCccCCcccccccCC---CCCCCCCCCccCCC--CCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccc
Q 003936 252 DGTRSKEQPSSELKLKKC---PRPESLPSGQCMFK--SLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGL 326 (785)
Q Consensus 252 ~~~~~~~~~~~~L~l~~~---~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l 326 (785)
..+.+... .....-+..+..+. +|+.|++.++...+..+..+..+++|++|++++|.++.+|..+
T Consensus 228 ----------~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l 297 (606)
T 3t6q_A 228 ----------QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL 297 (606)
T ss_dssp ----------EEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSC
T ss_pred ----------hheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhh
Confidence 00000000 00000011111122 6778888887665555666888888888888888888888888
Q ss_pred cCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccc
Q 003936 327 GQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSL 406 (785)
Q Consensus 327 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~ 406 (785)
+.+++|++|++++|.+.+..|..+..+++|+.|++++|.....++ +..+
T Consensus 298 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------------------------~~~~ 346 (606)
T 3t6q_A 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG-------------------------------TGCL 346 (606)
T ss_dssp CSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC-------------------------------SSTT
T ss_pred cccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc-------------------------------hhhh
Confidence 888888888888888887777788888888888888875221110 1123
Q ss_pred cCCCCCcEEEeccccCCCcC--CcccCCcccchhhhccCcccccc-Chhhhhhh-hcccccccCCCCccCCc-cccCCCC
Q 003936 407 CMFKSLTSLEIIDCKKLERL--PDELGNLEALEELRVEGTGIREV-PKSLAQLA-LSKLKLKKCSSFESLPS-RLYVSKS 481 (785)
Q Consensus 407 ~~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~-L~~L~l~~~~~~~~lp~-~~~~~~~ 481 (785)
..+++|+.|++++|.+.+.. +..+..+++|++|++++|.++.+ |..+..+. |+.|++++|...+..|. .+..+++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 34455555555555444332 44444555555555555554433 22333322 55555555544443332 3555688
Q ss_pred CCEEEeeCCcCcccCCCccccccccceEEecCeeccc--c--CcccCCCCCCcEEEccCCccccc-cccccCCCCCCEEE
Q 003936 482 LTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIRE--V--PESLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLK 556 (785)
Q Consensus 482 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--l--p~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~ 556 (785)
|++|++++|.+.+..|..++.+++|++|++++|.++. + +..+..+++|++|++++|+++++ |..++.+++|+.|+
T Consensus 427 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 506 (606)
T 3t6q_A 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506 (606)
T ss_dssp CCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEE
Confidence 8888888888887778888888888888888888774 2 24577888888888888888875 56788888888888
Q ss_pred cccCCCCC-CCCcCcCCCCCCEEeCCCCCCCCCcc
Q 003936 557 LSNNNLER-IPERLDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 557 L~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
+++|+++. .|..+..+++| +|++++|+++.+|+
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred CCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 88888876 46778888888 88888888776653
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.9e-44 Score=414.34 Aligned_cols=503 Identities=16% Similarity=0.152 Sum_probs=391.3
Q ss_pred cccceeeeecCCCccccccCC-CCCC-CceEEEEecCCCCccccc---ccccCceEEEcCCCCcccc-cccccCCCCCcE
Q 003936 19 TELRLLKFCGSKNKCMVHSLE-GVPF-TELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQL-WDDVQNLVSLKR 92 (785)
Q Consensus 19 ~~Lr~L~l~~~~~~~~~~~~~-~~~~-~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~ 92 (785)
++|++|++++|.+ ..++. .+.. ++|++|++++|.++.++. ..+++|++|++++|.++.+ |..++++++|++
T Consensus 32 ~~l~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFNPL---KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCcCEEECCCCCc---CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 6899999999998 44554 5555 999999999999998855 7899999999999999988 778999999999
Q ss_pred EecCCCccccCCC-CCccccccceeccccccCcc-ccccccccCCcccEEecCCCCCCCcCCCcc-cccccc----EEec
Q 003936 93 IDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLT-ETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLK----RLVL 165 (785)
Q Consensus 93 L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~----~L~l 165 (785)
|+|++|.+....+ .++.+++|++|++++|.+.+ .+|..++++++|++|++++|......|..+ .+.+|+ +|++
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence 9999998766664 69999999999999998765 679999999999999999987766666666 566654 8999
Q ss_pred cCCcCCCCCCCccc--ccccccccccccccc--ccCcchhccccccceeccccccccccchhhhcccccccccccCCCCC
Q 003936 166 RGCSNLKNLPKMTS--CHLRSTLPLLGVGIE--ELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNL 241 (785)
Q Consensus 166 s~~~~l~~lp~~~~--~~L~~~L~l~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L 241 (785)
++|. ++.++.... .+|+ .+++++|.+. .+|.++++++.|+.+.+......... .+..+.-.....+
T Consensus 189 ~~n~-l~~~~~~~~~~~~L~-~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~--------~l~~~~~~~~~~l 258 (606)
T 3vq2_A 189 SLNP-IDFIQDQAFQGIKLH-ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER--------NLEIFEPSIMEGL 258 (606)
T ss_dssp TTCC-CCEECTTTTTTCEEE-EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC--------CCSCCCGGGGTTG
T ss_pred cCCC-cceeCcccccCceee-eeeccCCccchhHHHHHhccccccccccccccccccCC--------cccccChHHhhhh
Confidence 9985 444544333 4788 9999999884 67888999999999888655433211 1111111111111
Q ss_pred ccccCCCcccCCCCCccCCcccccc-cCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccc
Q 003936 242 QFLEMPSCNIDGTRSKEQPSSELKL-KKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIR 320 (785)
Q Consensus 242 ~~L~l~~n~~~~~~~~~~~~~~L~l-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~ 320 (785)
..+.+. .+.+ ..+...+..|. +..+++|+.|++.++.. ..+| .+..+++|++|++++|.+.
T Consensus 259 ~~l~l~---------------~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l~ 320 (606)
T 3vq2_A 259 CDVTID---------------EFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQLK 320 (606)
T ss_dssp GGSEEE---------------EEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCCS
T ss_pred hhccHh---------------heeccccccccccccc-cccCCCCCEEEecCccc-hhhh-hccccccCCEEEcccccCc
Confidence 111110 0111 11222233344 56688999999988875 5566 7888999999999999998
Q ss_pred cCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCc
Q 003936 321 ELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLE 400 (785)
Q Consensus 321 ~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~ 400 (785)
.+|. + .+++|++|++++|...+.. .+..+++|+.|++++|.. + ...
T Consensus 321 ~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l-~-----------------------------~~~ 366 (606)
T 3vq2_A 321 QFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNAL-S-----------------------------FSG 366 (606)
T ss_dssp SCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCE-E-----------------------------EEE
T ss_pred cccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCcc-C-----------------------------CCc
Confidence 8884 5 8899999999998766654 566888899999888741 0 011
Q ss_pred cCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccCh--hhhhhh-hcccccccCCCCccCCcccc
Q 003936 401 SLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPK--SLAQLA-LSKLKLKKCSSFESLPSRLY 477 (785)
Q Consensus 401 ~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~--~~~~l~-L~~L~l~~~~~~~~lp~~~~ 477 (785)
.+|..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+..++. .+..+. |+.|++++|...+..|..+.
T Consensus 367 ~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 445 (606)
T 3vq2_A 367 CCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL 445 (606)
T ss_dssp ECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred chhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc
Confidence 124566777888888888887443 55777788888888888888876543 444443 88888888887777888888
Q ss_pred CCCCCCEEEeeCCcCcc-cCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCccccc-cccccCCCCCCE
Q 003936 478 VSKSLTSLEIIDCKNFM-RLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVS 554 (785)
Q Consensus 478 ~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~ 554 (785)
.+++|++|++++|.+.+ .+|..++.+++|+.|++++|.++.+ |..+..+++|++|++++|+++++ |..+..+++|+.
T Consensus 446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 525 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525 (606)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCE
Confidence 88999999999999988 4788999999999999999999977 67799999999999999999985 788999999999
Q ss_pred EEcccCCCCCCCCcCcCCC-CCCEEeCCCCCCCC
Q 003936 555 LKLSNNNLERIPERLDPLS-SLKYLDLFENNLDR 587 (785)
Q Consensus 555 L~L~~n~l~~lp~~l~~l~-~L~~L~l~~n~l~~ 587 (785)
|++++|+++.+|..+..++ +|++|++++|++..
T Consensus 526 L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp EECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred EECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 9999999999999998887 59999999999764
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.5e-43 Score=407.55 Aligned_cols=475 Identities=18% Similarity=0.155 Sum_probs=368.6
Q ss_pred eEEEEecCCCCcccccccccCceEEEcCCCCcccc-cccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccC
Q 003936 46 LRYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSS 123 (785)
Q Consensus 46 L~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~ 123 (785)
-+.++.++..++.+|..-.+++++|++++|.++.+ |..|.++++|++|+|++|.+....| .|..+++|++|+|++|.+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 35788899999999985566899999999999988 5679999999999999999877767 589999999999999998
Q ss_pred ccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhc
Q 003936 124 LTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKC 202 (785)
Q Consensus 124 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~ 202 (785)
.+..|..++.+++|++|++++|......|..+ ++++|++|++++|... .++ .| .+..
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~-~~~--------------------~~-~~~~ 151 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHIS-SIK--------------------LP-KGFP 151 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCC-CCC--------------------CC-TTCC
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCccc-ccC--------------------cc-cccC
Confidence 88889999999999999999976555445556 7889999999887422 111 12 2334
Q ss_pred cccccceeccccccccccchhhhcccccc--cccccCCCCCccccCCCcccCCCCCccCC---cccccccCCCCCCCCCC
Q 003936 203 LSNIGELLIYSCKRLENISSSIFKLQFLE--SIRIHRCPNLQFLEMPSCNIDGTRSKEQP---SSELKLKKCPRPESLPS 277 (785)
Q Consensus 203 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~--~L~l~~~~~L~~L~l~~n~~~~~~~~~~~---~~~L~l~~~~~~~~~~~ 277 (785)
+++|++|++++|.+.+..+..++.+++|+ .|++++ |.+.+.....+. ...+++++|. .++.
T Consensus 152 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~-----------n~l~~~~~~~~~~~~L~~L~l~~~~---~~~~ 217 (606)
T 3t6q_A 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG-----------NDIAGIEPGAFDSAVFQSLNFGGTQ---NLLV 217 (606)
T ss_dssp CTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTT-----------CCCCEECTTTTTTCEEEEEECTTCS---CHHH
T ss_pred CcccCEEEcccCcccccChhhhhhhcccceeEEecCC-----------CccCccChhHhhhccccccccCCch---hHHH
Confidence 88999999999999988888888888777 444444 444332222211 1123444433 1111
Q ss_pred CccCCCC--CcEEecccCCCCC--CC-CccccCcc--ccceeeccCcccccCCcc-ccCccccceecccCccCCcccccc
Q 003936 278 GQCMFKS--LTSLEIIDCPNFE--RL-PDELGNLQ--ALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSS 349 (785)
Q Consensus 278 ~~~~l~~--L~~L~l~~~~~~~--~l-p~~l~~l~--~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~ 349 (785)
.+..+.+ ++.+.+..+.... .+ +..+..+. +|+.|++++|.++.++.. ++.+++|++|++++|.+. .+|..
T Consensus 218 ~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~ 296 (606)
T 3t6q_A 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSG 296 (606)
T ss_dssp HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSS
T ss_pred HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChh
Confidence 1122222 2222222222221 11 22333333 789999999999987765 888999999999998755 77888
Q ss_pred ccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCc-
Q 003936 350 IFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPD- 428 (785)
Q Consensus 350 ~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~- 428 (785)
+..+++|++|++++|. .....|..+..+++|+.|++++|.+.+.+|.
T Consensus 297 l~~l~~L~~L~l~~n~--------------------------------l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 344 (606)
T 3t6q_A 297 LVGLSTLKKLVLSANK--------------------------------FENLCQISASNFPSLTHLSIKGNTKRLELGTG 344 (606)
T ss_dssp CCSCTTCCEEECTTCC--------------------------------CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSS
T ss_pred hcccccCCEEECccCC--------------------------------cCcCchhhhhccCcCCEEECCCCCcccccchh
Confidence 8889999999998875 1112345678899999999999998877765
Q ss_pred ccCCcccchhhhccCcccccc---Chhhhhhh-hcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCC-ccccc
Q 003936 429 ELGNLEALEELRVEGTGIREV---PKSLAQLA-LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPD-EIGNL 503 (785)
Q Consensus 429 ~~~~l~~L~~L~L~~n~i~~l---p~~~~~l~-L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l 503 (785)
.+..+++|++|++++|.++.+ +..+..+. |+.|++++|...+..|..+..+++|++|++++|.+.+..+. .+..+
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 424 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNL 424 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTC
T ss_pred hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCc
Confidence 489999999999999999866 55566654 99999999998888899999999999999999999887654 48999
Q ss_pred cccceEEecCeecccc-CcccCCCCCCcEEEccCCcccc--cc--ccccCCCCCCEEEcccCCCCCC-CCcCcCCCCCCE
Q 003936 504 EYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQI--IP--ESLNQLSSLVSLKLSNNNLERI-PERLDPLSSLKY 577 (785)
Q Consensus 504 ~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~--lp--~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~ 577 (785)
++|+.|++++|.++.. |..+..+++|++|++++|.+++ +| ..+..+++|+.|++++|+++++ |..+..+++|+.
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 504 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCE
Confidence 9999999999999876 6778999999999999999986 33 5689999999999999999986 788999999999
Q ss_pred EeCCCCCCCCCc
Q 003936 578 LDLFENNLDRIP 589 (785)
Q Consensus 578 L~l~~n~l~~lp 589 (785)
|++++|+++.++
T Consensus 505 L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 505 VDLSHNRLTSSS 516 (606)
T ss_dssp EECCSSCCCGGG
T ss_pred EECCCCccCcCC
Confidence 999999987554
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-41 Score=402.35 Aligned_cols=512 Identities=15% Similarity=0.102 Sum_probs=298.1
Q ss_pred eeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCC-cccc-cccccCCCCCcEEecCC
Q 003936 23 LLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSK-VTQL-WDDVQNLVSLKRIDLKY 97 (785)
Q Consensus 23 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~-i~~l-~~~~~~l~~L~~L~Ls~ 97 (785)
..+.+++++ ..+|. ..++|++|++++|.++.++. ..+++|++|++++|. +..+ |..|.++++|++|+|++
T Consensus 8 ~~dcs~~~L---~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 8 IAFYRFCNL---TQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEESCCCS---SCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEEccCCCC---CCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 344455444 44555 12567777777777765543 666777777777763 3344 45567777777777777
Q ss_pred CccccCCC-CCccccccceeccccccCccccccc--cccCCcccEEecCCCCCCCcCC-Ccc-ccccccEEeccCCcCCC
Q 003936 98 SKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSS--IQYLNKLEVLDLDRCKSLTSLP-TSI-HSKYLKRLVLRGCSNLK 172 (785)
Q Consensus 98 n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~~p-~~~-~l~~L~~L~ls~~~~l~ 172 (785)
|.+....| .+..+++|++|+|++|.+.+.+|.. ++++++|++|++++|...+..+ ..+ ++++|++|++++|....
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 76655555 4667777777777777655545444 6677777777777765544433 234 66777777777664333
Q ss_pred CCCCccc----cccccccccccccccc-cCcchhcccc------ccceeccccccccccchhhhcc---cccccccccCC
Q 003936 173 NLPKMTS----CHLRSTLPLLGVGIEE-LPSSIKCLSN------IGELLIYSCKRLENISSSIFKL---QFLESIRIHRC 238 (785)
Q Consensus 173 ~lp~~~~----~~L~~~L~l~~~~i~~-lp~~l~~l~~------L~~L~L~~~~~~~~~~~~l~~l---~~L~~L~l~~~ 238 (785)
..+.... .+|+ .+++++|.+.. .|..++.+.+ |+.|++++|.+....+..+... ..++.+.+..+
T Consensus 163 ~~~~~l~~l~~~~L~-~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHELEPLQGKTLS-FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGGGHHHHHCSSC-CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eCHHHcccccCCccc-eEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 3333222 3455 66666666542 3344444433 7788888877766665554432 33444444321
Q ss_pred CCCccccCCCcccCCCCCcc------CCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCcccccee
Q 003936 239 PNLQFLEMPSCNIDGTRSKE------QPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRL 312 (785)
Q Consensus 239 ~~L~~L~l~~n~~~~~~~~~------~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L 312 (785)
........+.+.+..... .....+++++|...+..+..+..+++|+.|++.+|...+..|..|..+++|++|
T Consensus 242 --~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 242 --IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp --CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred --cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 011111112221111110 112224555555555555555666666666666666555555566666666666
Q ss_pred eccCcccccC-CccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCcccc
Q 003936 313 IIDGTAIREL-PEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVL 391 (785)
Q Consensus 313 ~L~~n~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l 391 (785)
++++|.++.+ |..++.+++|++|++++|.+....+..+..+++|+.|++++|. +..+
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-----------------l~~i----- 377 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-----------------LTTI----- 377 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-----------------SCCC-----
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-----------------CCcc-----
Confidence 6666666644 4456666666666666666555555556666666666666664 2211
Q ss_pred ccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhh--hhh-hhcccccccCCC
Q 003936 392 KLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSL--AQL-ALSKLKLKKCSS 468 (785)
Q Consensus 392 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~--~~l-~L~~L~l~~~~~ 468 (785)
..+++|+.|++++|.+. .+|.. ..+++.|++++|.++.++... ..+ .|+.|++++|..
T Consensus 378 ---------------~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l 438 (844)
T 3j0a_A 378 ---------------HFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRF 438 (844)
T ss_dssp ---------------SSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCC
T ss_pred ---------------cCCCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcc
Confidence 12455666666666544 33332 344555666666665544321 122 245555555544
Q ss_pred CccCCc-cccCCCCCCEEEeeCCcCc-----ccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCcccc
Q 003936 469 FESLPS-RLYVSKSLTSLEIIDCKNF-----MRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQI 541 (785)
Q Consensus 469 ~~~lp~-~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~ 541 (785)
.+..+. .+..+++|+.|++++|.+. +..+..+.++++|+.|+|++|.++.+| ..+..+++|+.|+|++|+++.
T Consensus 439 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp CCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred cccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc
Confidence 332221 2333578888888888875 334456778888888888888888774 457888888888888888888
Q ss_pred ccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 542 IPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 542 lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
+|..... ++|+.|+|++|+++++++. .+.+|+.|++++|++.
T Consensus 519 l~~~~~~-~~L~~L~Ls~N~l~~~~~~--~~~~L~~l~l~~Np~~ 560 (844)
T 3j0a_A 519 LSHNDLP-ANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKFI 560 (844)
T ss_dssp CCCCCCC-SCCCEEEEEEECCCCCCSC--CCSSCCEEEEEEECCC
T ss_pred cChhhhh-ccccEEECCCCcCCCCChh--HhCCcCEEEecCCCcc
Confidence 7755333 7888888888888875332 2457888888888754
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-41 Score=401.21 Aligned_cols=516 Identities=17% Similarity=0.126 Sum_probs=370.2
Q ss_pred EEEEecCCCCcccccccccCceEEEcCCCCcccc-cccccCCCCCcEEecCCCccccCC-C-CCccccccceeccccccC
Q 003936 47 RYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKYSKLLTKL-P-DLSLAQNLEILDLGYCSS 123 (785)
Q Consensus 47 ~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~-~-~l~~l~~L~~L~Ls~n~~ 123 (785)
+..+.+++.++.+|. .+++|++|+|++|.|+.+ +..+.++++|++|+|++|.....+ | .|..+++|++|+|++|.+
T Consensus 7 ~~~dcs~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EEEEESCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred eEEEccCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 578899999999998 778999999999999977 567999999999999999665555 4 599999999999999998
Q ss_pred ccccccccccCCcccEEecCCCCCCCcCCCc--c-ccccccEEeccCCcCCCCCCC-ccc--ccccccccccccccccc-
Q 003936 124 LTETHSSIQYLNKLEVLDLDRCKSLTSLPTS--I-HSKYLKRLVLRGCSNLKNLPK-MTS--CHLRSTLPLLGVGIEEL- 196 (785)
Q Consensus 124 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~--~-~l~~L~~L~ls~~~~l~~lp~-~~~--~~L~~~L~l~~~~i~~l- 196 (785)
.+..|..|+++++|++|+|++|.....+|.. + .+++|++|++++|...+..+. .+. .+|+ .|++++|.+..+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~-~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK-SIDFSSNQIFLVC 164 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC-EEEEESSCCCCCC
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC-EEECCCCcCCeeC
Confidence 8888999999999999999998777766654 5 899999999999864443332 222 5666 777777777543
Q ss_pred Ccchhcc--ccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcc-------ccccc
Q 003936 197 PSSIKCL--SNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSS-------ELKLK 267 (785)
Q Consensus 197 p~~l~~l--~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~-------~L~l~ 267 (785)
+..+..+ ++|+.|++++|.+.+..+..++.+++.- ....|+.+++++|.+++.....+... .+.+.
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~-----~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF-----RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTT-----TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred HHHcccccCCccceEECCCCccccccccchhhcCCcc-----ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 4556655 6777777777777666655444443200 01125555666665544332222111 12221
Q ss_pred C---------CCCCCCCCCCccC--CCCCcEEecccCCCCCCCCccccCccccceeeccCcccccC-CccccCcccccee
Q 003936 268 K---------CPRPESLPSGQCM--FKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIREL-PEGLGQLALLSKL 335 (785)
Q Consensus 268 ~---------~~~~~~~~~~~~~--l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L 335 (785)
. +.........+.. .++|+.|++.+|...+..|..+..+++|+.|++++|.++.+ |..++.+++|++|
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 319 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE
Confidence 1 1111111111222 25677777777665555566667777777777777777654 3346667777777
Q ss_pred cccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEE
Q 003936 336 ELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSL 415 (785)
Q Consensus 336 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L 415 (785)
++++|.+.+..+..+..+++|+.|++++|. +..+ .+..+..+++|+.|
T Consensus 320 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-----------------i~~~---------------~~~~~~~l~~L~~L 367 (844)
T 3j0a_A 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNH-----------------IAII---------------QDQTFKFLEKLQTL 367 (844)
T ss_dssp EEESCCCSCCCSCSCSSCTTCCEEECCSCC-----------------CCCC---------------CSSCSCSCCCCCEE
T ss_pred ECCCCCCCccCHHHhcCCCCCCEEECCCCC-----------------CCcc---------------ChhhhcCCCCCCEE
Confidence 777776666666666667777777776663 2221 12356789999999
Q ss_pred EeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCcc-CCccccCCCCCCEEEeeCCcCcc
Q 003936 416 EIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFES-LPSRLYVSKSLTSLEIIDCKNFM 494 (785)
Q Consensus 416 ~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~-lp~~~~~~~~L~~L~l~~~~~~~ 494 (785)
++++|.+.+ +..+++|+.|++++|.++.+|... ..++.+++++|...+. .+..+..+++|+.|++++|++.+
T Consensus 368 ~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~~l~~~~--~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~ 440 (844)
T 3j0a_A 368 DLRDNALTT-----IHFIPSIPDIFLSGNKLVTLPKIN--LTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSS 440 (844)
T ss_dssp EEETCCSCC-----CSSCCSCSEEEEESCCCCCCCCCC--TTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCC
T ss_pred ECCCCCCCc-----ccCCCCcchhccCCCCcccccccc--cccceeecccCccccCchhhhhhcCCccceeeCCCCcccc
Confidence 999998754 233788999999999999988653 3478888988876542 22334578999999999999886
Q ss_pred cCCC-ccccccccceEEecCeecccc------CcccCCCCCCcEEEccCCcccccc-ccccCCCCCCEEEcccCCCCCCC
Q 003936 495 RLPD-EIGNLEYLKVLTIKGTAIREV------PESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSLVSLKLSNNNLERIP 566 (785)
Q Consensus 495 ~~~~-~~~~l~~L~~L~L~~n~l~~l------p~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp 566 (785)
..+. .+..+++|+.|++++|.++.+ +..+.++++|+.|+|++|+++++| ..+..+++|+.|+|++|+++.+|
T Consensus 441 ~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 520 (844)
T 3j0a_A 441 CSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLS 520 (844)
T ss_dssp CCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCC
T ss_pred cccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccC
Confidence 5443 456789999999999999743 356889999999999999999976 45899999999999999999987
Q ss_pred CcCcCCCCCCEEeCCCCCCCCCccccccCCCCCCcccccccceeeecccc
Q 003936 567 ERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCL 616 (785)
Q Consensus 567 ~~l~~l~~L~~L~l~~n~l~~lp~~~~~~~~~ip~~l~~l~~~l~~~~C~ 616 (785)
..... ++|+.|++++|+++.+++.. -.+++.++++-+...|.
T Consensus 521 ~~~~~-~~L~~L~Ls~N~l~~~~~~~-------~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 521 HNDLP-ANLEILDISRNQLLAPNPDV-------FVSLSVLDITHNKFICE 562 (844)
T ss_dssp CCCCC-SCCCEEEEEEECCCCCCSCC-------CSSCCEEEEEEECCCCS
T ss_pred hhhhh-ccccEEECCCCcCCCCChhH-------hCCcCEEEecCCCcccc
Confidence 65444 89999999999988665431 23677766666777663
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-41 Score=387.24 Aligned_cols=492 Identities=18% Similarity=0.181 Sum_probs=333.9
Q ss_pred ceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCccccc-ccccCCCCCcEEecCC
Q 003936 22 RLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLW-DDVQNLVSLKRIDLKY 97 (785)
Q Consensus 22 r~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~ 97 (785)
++++.++..+ ..+|..+. +++++|++++|.++.++. ..+++|++|++++|+++.++ ..|.++++|++|+|++
T Consensus 10 ~~~~c~~~~l---~~ip~~l~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 10 ITYQCMELNF---YKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp TEEECCSSCC---SSCCSSSC-SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEeCCCCc---cccCCCcc-ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 3445554444 55666543 678888888888887765 77888889999888888775 4588888899999988
Q ss_pred CccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCC-cCCCcc-ccccccEEeccCCcCCCCC
Q 003936 98 SKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLT-SLPTSI-HSKYLKRLVLRGCSNLKNL 174 (785)
Q Consensus 98 n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~p~~~-~l~~L~~L~ls~~~~l~~l 174 (785)
|.+....| .+..+++|++|++++|.+....+..++.+++|++|++++|.... .+|..+ ++++|++|++++|......
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 88666555 58888888999988887555444468888889999988876555 467777 7888888888887433222
Q ss_pred CCccc--ccc----ccccccccccccccCcchhccccccceeccccccc-cccchhhhcccccccccccC--CC---CCc
Q 003936 175 PKMTS--CHL----RSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRL-ENISSSIFKLQFLESIRIHR--CP---NLQ 242 (785)
Q Consensus 175 p~~~~--~~L----~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~l~~--~~---~L~ 242 (785)
+.... .++ + .+++++|.+..++.......+|+.|++++|... ..++..+..++.++.+.+.. .. .++
T Consensus 166 ~~~~~~l~~L~~~~~-~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~ 244 (570)
T 2z63_A 166 CTDLRVLHQMPLLNL-SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244 (570)
T ss_dssp GGGGHHHHTCTTCCC-EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCE
T ss_pred HHHccchhccchhhh-hcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhh
Confidence 22222 233 3 667777777776655444447888888776432 23344455555544433221 00 000
Q ss_pred cccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCC--CCcEEecccCCC-CCCCCccccCccccceeeccCccc
Q 003936 243 FLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFK--SLTSLEIIDCPN-FERLPDELGNLQALNRLIIDGTAI 319 (785)
Q Consensus 243 ~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~-~~~lp~~l~~l~~L~~L~L~~n~i 319 (785)
.+. ...+..+. .++.+.+.++.. .+..|..+..+++|+.|++++|.+
T Consensus 245 ~~~------------------------------~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l 294 (570)
T 2z63_A 245 KFD------------------------------KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI 294 (570)
T ss_dssp ECC------------------------------TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE
T ss_pred hcc------------------------------hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc
Confidence 000 00011111 245555555532 345667777788888888888888
Q ss_pred ccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCC
Q 003936 320 RELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKL 399 (785)
Q Consensus 320 ~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l 399 (785)
+.+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.....+
T Consensus 295 ~~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~----------------------------- 341 (570)
T 2z63_A 295 ERVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF----------------------------- 341 (570)
T ss_dssp CSCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC-----------------------------
T ss_pred hhhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc-----------------------------
Confidence 8888777777 8888888887765 4444 46777888888877522111
Q ss_pred ccCCccccCCCCCcEEEeccccCCCcC--CcccCCcccchhhhccCccccccChhhhhhh-hcccccccCCCCccCC-cc
Q 003936 400 ESLPSSLCMFKSLTSLEIIDCKKLERL--PDELGNLEALEELRVEGTGIREVPKSLAQLA-LSKLKLKKCSSFESLP-SR 475 (785)
Q Consensus 400 ~~l~~~~~~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~-L~~L~l~~~~~~~~lp-~~ 475 (785)
+. ..+++|+.|++++|.+.+.. |..+..+++|++|++++|.++.+|..+..+. |+.|++++|...+..| ..
T Consensus 342 ---~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 342 ---SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp ---CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred ---cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhh
Confidence 11 34555666666665544332 4445555666666666666555554443332 5555555555444433 34
Q ss_pred ccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecc--ccCcccCCCCCCcEEEccCCccccc-cccccCCCCC
Q 003936 476 LYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR--EVPESLGQLSSLEWLVLSDNNLQII-PESLNQLSSL 552 (785)
Q Consensus 476 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L 552 (785)
+..+++|++|++++|.+.+..|..+.++++|+.|++++|.++ .+|..+..+++|++|++++|+++++ |..+..+++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 556689999999999998888888999999999999999987 5788899999999999999999886 7788999999
Q ss_pred CEEEcccCCCCCCC-CcCcCCCCCCEEeCCCCCCC
Q 003936 553 VSLKLSNNNLERIP-ERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 553 ~~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~ 586 (785)
+.|++++|+++++| ..+..+++|+.|++++|+++
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 99999999998874 45788999999999999855
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.8e-40 Score=380.64 Aligned_cols=266 Identities=18% Similarity=0.218 Sum_probs=188.3
Q ss_pred CCcEEecccCCCCCCCCc--cccCccccceeeccCcccc-cCCccccCccccceecccCccCCccccccccCCCC-CCEE
Q 003936 284 SLTSLEIIDCPNFERLPD--ELGNLQALNRLIIDGTAIR-ELPEGLGQLALLSKLELKNCSELEYISSSIFKLKS-VESI 359 (785)
Q Consensus 284 ~L~~L~l~~~~~~~~lp~--~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L 359 (785)
+|+.|++.+|... .+|. .++++++|++|++++|.++ .+| .++.+++|++|++++|.+. .+|..+..+++ |+.|
T Consensus 306 ~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 306 KIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENL 382 (636)
T ss_dssp TCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEE
T ss_pred CCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEE
Confidence 3333333333332 4555 5666666666666666666 666 5666666666666666554 56666666666 6666
Q ss_pred EeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCC--CCCcEEEeccccCCCcCCcccC------
Q 003936 360 EISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMF--KSLTSLEIIDCKKLERLPDELG------ 431 (785)
Q Consensus 360 ~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l--~~L~~L~l~~~~~~~~~p~~~~------ 431 (785)
++++|. +..+|..+..+ ++|+.|++++|.+.+..|..+.
T Consensus 383 ~Ls~N~---------------------------------l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~ 429 (636)
T 4eco_A 383 SFAHNK---------------------------------LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP 429 (636)
T ss_dssp ECCSSC---------------------------------CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred EccCCc---------------------------------CcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence 666663 22333333333 3677777777776666666666
Q ss_pred -CcccchhhhccCccccccChhhhh-h-hhcccccccCCCCccCCccccC--------CCCCCEEEeeCCcCcccCCCcc
Q 003936 432 -NLEALEELRVEGTGIREVPKSLAQ-L-ALSKLKLKKCSSFESLPSRLYV--------SKSLTSLEIIDCKNFMRLPDEI 500 (785)
Q Consensus 432 -~l~~L~~L~L~~n~i~~lp~~~~~-l-~L~~L~l~~~~~~~~lp~~~~~--------~~~L~~L~l~~~~~~~~~~~~~ 500 (785)
.+++|+.|++++|.++.+|..+.. + .|+.|++++|... .+|..... +++|+.|++++|++. .+|..+
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 507 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDF 507 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGG
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhh
Confidence 566677777777777766665543 2 3666777666655 55544332 238999999999988 688877
Q ss_pred c--cccccceEEecCeeccccCcccCCCCCCcEEEcc------CCccc-cccccccCCCCCCEEEcccCCCCCCCCcCcC
Q 003936 501 G--NLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLS------DNNLQ-IIPESLNQLSSLVSLKLSNNNLERIPERLDP 571 (785)
Q Consensus 501 ~--~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls------~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~ 571 (785)
. .+++|+.|++++|.++.+|..+..+++|++|+|+ +|++. .+|..++.+++|+.|+|++|+++.+|..+.
T Consensus 508 ~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~- 586 (636)
T 4eco_A 508 RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT- 586 (636)
T ss_dssp STTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC-
T ss_pred hhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh-
Confidence 6 8999999999999999999999999999999995 45555 489999999999999999999988998866
Q ss_pred CCCCCEEeCCCCCCCCCc
Q 003936 572 LSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 572 l~~L~~L~l~~n~l~~lp 589 (785)
++|+.|++++|++..++
T Consensus 587 -~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 587 -PNISVLDIKDNPNISID 603 (636)
T ss_dssp -TTCCEEECCSCTTCEEE
T ss_pred -CcCCEEECcCCCCcccc
Confidence 79999999999987664
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.3e-39 Score=371.96 Aligned_cols=449 Identities=20% Similarity=0.226 Sum_probs=218.9
Q ss_pred EEecCCCCcccccccccCceEEEcCCCCcccc-cccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCccc
Q 003936 49 FEWHQFPLKTLNILHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTE 126 (785)
Q Consensus 49 L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~ 126 (785)
.+.+++.++.+|..-.++|++|++++|+++.+ |..+..+++|++|+|++|++....| .+..+++|++|++++|.+.+.
T Consensus 10 c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 89 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL 89 (549)
T ss_dssp EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC
T ss_pred EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc
Confidence 45555556666652235666666666666655 3446666666666666666554444 356666666666666665554
Q ss_pred cccccccCCcccEEecCCCCCCC-cCCCcc-ccccccEEeccCCcCCCCCCCccc---cccccccccccccccc-cCcch
Q 003936 127 THSSIQYLNKLEVLDLDRCKSLT-SLPTSI-HSKYLKRLVLRGCSNLKNLPKMTS---CHLRSTLPLLGVGIEE-LPSSI 200 (785)
Q Consensus 127 ~~~~l~~l~~L~~L~L~~~~~~~-~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~---~~L~~~L~l~~~~i~~-lp~~l 200 (785)
.+..++.+++|++|++++|.... ..|..+ ++++|++|++++|..++.+|.... .+|+ +|++++|.+.. .|.++
T Consensus 90 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~l 168 (549)
T 2z81_A 90 SSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLN-ELEIKALSLRNYQSQSL 168 (549)
T ss_dssp CHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEE-EEEEEETTCCEECTTTT
T ss_pred CHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccC-eeeccCCcccccChhhh
Confidence 44456666666666666654433 234444 566666666666543333332110 1222 33333333332 34455
Q ss_pred hccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCcc
Q 003936 201 KCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQC 280 (785)
Q Consensus 201 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~ 280 (785)
+.+++|++|++++|.........+..+++|+.|++ ++|.+++...... ....
T Consensus 169 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L-----------~~n~l~~~~~~~~-----------------~~~~ 220 (549)
T 2z81_A 169 KSIRDIHHLTLHLSESAFLLEIFADILSSVRYLEL-----------RDTNLARFQFSPL-----------------PVDE 220 (549)
T ss_dssp TTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEE-----------ESCBCTTCCCCCC-----------------SSCC
T ss_pred hccccCceEecccCcccccchhhHhhcccccEEEc-----------cCCcccccccccc-----------------chhh
Confidence 56666666666665543221111223333333333 3333322110000 0111
Q ss_pred CCCCCcEEecccCCCCC----CCCccccCccccceeeccCcccccCCc-------cccCccccceecccCccCCcc----
Q 003936 281 MFKSLTSLEIIDCPNFE----RLPDELGNLQALNRLIIDGTAIRELPE-------GLGQLALLSKLELKNCSELEY---- 345 (785)
Q Consensus 281 ~l~~L~~L~l~~~~~~~----~lp~~l~~l~~L~~L~L~~n~i~~lp~-------~l~~l~~L~~L~l~~~~~~~~---- 345 (785)
.+++|+.|++.++...+ .++..+..+++|+.+++++|.+..++. .+..+++|+.|++.++.+...
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 300 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSC
T ss_pred hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcc
Confidence 23445555554443221 112223334445555555544432211 123344444444444332211
Q ss_pred -ccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccc-cCCCCCcEEEeccccCC
Q 003936 346 -ISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSL-CMFKSLTSLEIIDCKKL 423 (785)
Q Consensus 346 -~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~-~~l~~L~~L~l~~~~~~ 423 (785)
++.......+|+.|++++| . +..+|..+ ..+++|+.|++++|.+.
T Consensus 301 ~l~~~~~~~~~L~~L~l~~n-----------------~----------------l~~ip~~~~~~l~~L~~L~Ls~N~l~ 347 (549)
T 2z81_A 301 DLSTVYSLLEKVKRITVENS-----------------K----------------VFLVPCSFSQHLKSLEFLDLSENLMV 347 (549)
T ss_dssp CCCHHHHHSTTCCEEEEESS-----------------C----------------CCCCCHHHHHHCTTCCEEECCSSCCC
T ss_pred cchhhhhhcccceEEEeccC-----------------c----------------cccCCHHHHhcCccccEEEccCCccc
Confidence 0111112234444444443 2 33445444 46788888888888877
Q ss_pred CcCC---cccCCcccchhhhccCccccccCh---hhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCC
Q 003936 424 ERLP---DELGNLEALEELRVEGTGIREVPK---SLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLP 497 (785)
Q Consensus 424 ~~~p---~~~~~l~~L~~L~L~~n~i~~lp~---~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~ 497 (785)
+.+| ..++.+++|+.|++++|.++.++. .+..+ ++|++|++++|++. .+|
T Consensus 348 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-----------------------~~L~~L~Ls~N~l~-~lp 403 (549)
T 2z81_A 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-----------------------KNLTSLDISRNTFH-PMP 403 (549)
T ss_dssp HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC-----------------------TTCCEEECTTCCCC-CCC
T ss_pred cccccchhhhhccccCcEEEccCCcccccccchhhhhcC-----------------------CCCCEEECCCCCCc-cCC
Confidence 7654 336778888888888888887653 23333 45555555555443 344
Q ss_pred CccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCE
Q 003936 498 DEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKY 577 (785)
Q Consensus 498 ~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 577 (785)
..+..+++|++|++++|.++.+|..+ .++|++|++++|++++++ ..+++|+.|++++|+++.+|+ ...+++|++
T Consensus 404 ~~~~~~~~L~~L~Ls~N~l~~l~~~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~ 477 (549)
T 2z81_A 404 DSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFPVLLV 477 (549)
T ss_dssp SCCCCCTTCCEEECTTSCCSCCCTTS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCTTCCE
T ss_pred hhhcccccccEEECCCCCcccccchh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCccCCE
Confidence 44445555555555555555444322 134555555555554433 244455555555555555544 234455555
Q ss_pred EeCCCCCCCCCc
Q 003936 578 LDLFENNLDRIP 589 (785)
Q Consensus 578 L~l~~n~l~~lp 589 (785)
|++++|+++.+|
T Consensus 478 L~Ls~N~l~~~~ 489 (549)
T 2z81_A 478 MKISRNQLKSVP 489 (549)
T ss_dssp EECCSSCCCCCC
T ss_pred EecCCCccCCcC
Confidence 555555544443
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.2e-40 Score=380.23 Aligned_cols=351 Identities=15% Similarity=0.192 Sum_probs=223.6
Q ss_pred CccccCCC-CCccccccceeccccccCccc-----------------cccccc--cCCcccEEecCCCCCCCcCCCcc-c
Q 003936 98 SKLLTKLP-DLSLAQNLEILDLGYCSSLTE-----------------THSSIQ--YLNKLEVLDLDRCKSLTSLPTSI-H 156 (785)
Q Consensus 98 n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~-----------------~~~~l~--~l~~L~~L~L~~~~~~~~~p~~~-~ 156 (785)
|.+.. +| .++.+++|++|+|++|.+.+. +|+.++ ++++|++|++++|...+.+|..+ +
T Consensus 193 n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 271 (636)
T 4eco_A 193 NNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271 (636)
T ss_dssp CEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTT
T ss_pred CCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhc
Confidence 34444 55 477788888888888876664 777777 88888888888877777778777 7
Q ss_pred cccccEEeccCCcCCC--CCCCccc--------cccccccccccccccccCc--chhccccccceeccccccccccchhh
Q 003936 157 SKYLKRLVLRGCSNLK--NLPKMTS--------CHLRSTLPLLGVGIEELPS--SIKCLSNIGELLIYSCKRLENISSSI 224 (785)
Q Consensus 157 l~~L~~L~ls~~~~l~--~lp~~~~--------~~L~~~L~l~~~~i~~lp~--~l~~l~~L~~L~L~~~~~~~~~~~~l 224 (785)
+++|++|++++|..++ .+|...+ .+|+ .|++++|.+..+|. .++.+++|++|++++|.+.+.+| .+
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~-~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ-IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC-EEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CC
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC-EEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hh
Confidence 7888888888775232 2332221 2333 44444444444454 45555555555555555544444 34
Q ss_pred hcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCcccc
Q 003936 225 FKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELG 304 (785)
Q Consensus 225 ~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~ 304 (785)
..+++|+.|++++ |.. ..+|..+.
T Consensus 350 ~~l~~L~~L~L~~-------------------------------------------------------N~l-~~lp~~l~ 373 (636)
T 4eco_A 350 GSEIKLASLNLAY-------------------------------------------------------NQI-TEIPANFC 373 (636)
T ss_dssp EEEEEESEEECCS-------------------------------------------------------SEE-EECCTTSE
T ss_pred CCCCCCCEEECCC-------------------------------------------------------Ccc-ccccHhhh
Confidence 4444333333332 211 13455566
Q ss_pred Cccc-cceeeccCcccccCCccccCcc--ccceecccCccCCcccccccc-------CCCCCCEEEeeCCCCCCCCCCCc
Q 003936 305 NLQA-LNRLIIDGTAIRELPEGLGQLA--LLSKLELKNCSELEYISSSIF-------KLKSVESIEISNCSNLKGFPEIP 374 (785)
Q Consensus 305 ~l~~-L~~L~L~~n~i~~lp~~l~~l~--~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~l~~lp~l~ 374 (785)
.+++ |++|++++|.++.+|..++.++ +|++|++++|.+.+..|..+. .+++|+.|++++|.
T Consensus 374 ~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~--------- 444 (636)
T 4eco_A 374 GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ--------- 444 (636)
T ss_dssp EECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC---------
T ss_pred hhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc---------
Confidence 6666 6666666666666666555443 666666666666666665555 45555555555552
Q ss_pred eeccCCCCCcccCccccccCCCCCCccCCcc-ccCCCCCcEEEeccccCCCcCCcccC--------CcccchhhhccCcc
Q 003936 375 FCNIDGSGIERIPSSVLKLNKCSKLESLPSS-LCMFKSLTSLEIIDCKKLERLPDELG--------NLEALEELRVEGTG 445 (785)
Q Consensus 375 ~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~p~~~~--------~l~~L~~L~L~~n~ 445 (785)
+..+|.. +..+++|+.|++++|.+. .+|.... ++++|+.|++++|.
T Consensus 445 ------------------------l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 499 (636)
T 4eco_A 445 ------------------------ISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNK 499 (636)
T ss_dssp ------------------------CCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSC
T ss_pred ------------------------cCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCc
Confidence 2223332 234566666666666655 4443221 12266666666666
Q ss_pred ccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecC------eecc-c
Q 003936 446 IREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKG------TAIR-E 518 (785)
Q Consensus 446 i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~------n~l~-~ 518 (785)
++.+|..+.. ..+++|+.|++++|++.+ +|..+..+++|+.|++++ |.+. .
T Consensus 500 l~~lp~~~~~---------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 500 LTKLSDDFRA---------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp CCBCCGGGST---------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred CCccChhhhh---------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccccc
Confidence 6666654430 034889999999998887 888888899999999954 5444 6
Q ss_pred cCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCC
Q 003936 519 VPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 519 lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l 565 (785)
+|..+..+++|++|+|++|++..+|..+. ++|+.|++++|++..+
T Consensus 558 ~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 558 WPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred ChHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCccc
Confidence 78899999999999999999988998866 7999999999988764
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3e-39 Score=368.82 Aligned_cols=456 Identities=20% Similarity=0.230 Sum_probs=257.3
Q ss_pred cccceeeeecCCCccccccCCCCCC-CceEEEEecCCCCccccc---ccccCceEEEcCCCCccccccc-ccCCCCCcEE
Q 003936 19 TELRLLKFCGSKNKCMVHSLEGVPF-TELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLWDD-VQNLVSLKRI 93 (785)
Q Consensus 19 ~~Lr~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L 93 (785)
++|++|++++|.+. ...|..+.. ++|++|++++|.++.++. ..+++|++|++++|.++.++.. ++.+++|++|
T Consensus 26 ~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKIT--YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCC--EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccC--ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 46666777766653 112334444 667777777776666553 5666677777777766665443 6666777777
Q ss_pred ecCCCccccC-CC-CCccccccceeccccccCccccc-cccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCc
Q 003936 94 DLKYSKLLTK-LP-DLSLAQNLEILDLGYCSSLTETH-SSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCS 169 (785)
Q Consensus 94 ~Ls~n~~~~~-~~-~l~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~ 169 (785)
+|++|.+... .| .++.+++|++|++++|...+.+| ..++.+++|++|++++|...+..|..+ .+++|++|++++|.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 7777665432 22 46666677777777666444444 456666777777777666555566555 56666667666653
Q ss_pred CCCCCCCcc---ccccccccccccccccccC---cc-hhccccccceeccccccccccchhhhcccccccccccCCCCCc
Q 003936 170 NLKNLPKMT---SCHLRSTLPLLGVGIEELP---SS-IKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQ 242 (785)
Q Consensus 170 ~l~~lp~~~---~~~L~~~L~l~~~~i~~lp---~~-l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~ 242 (785)
...+|... ..+|+ .+++++|.+..++ .. ...+++|+.|++++|.+.+..+..+... +..+++++
T Consensus 184 -~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-------~~~~~~L~ 254 (549)
T 2z81_A 184 -SAFLLEIFADILSSVR-YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL-------LRYILELS 254 (549)
T ss_dssp -STTHHHHHHHSTTTBS-EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGG-------GGGCTTCC
T ss_pred -ccccchhhHhhccccc-EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHH-------hhhhcccc
Confidence 22333222 13455 6666666655542 11 2335556666666665544333222110 01122333
Q ss_pred cccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCC-----CCCccccCccccceeeccCc
Q 003936 243 FLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFE-----RLPDELGNLQALNRLIIDGT 317 (785)
Q Consensus 243 ~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~lp~~l~~l~~L~~L~L~~n 317 (785)
.+++++|.+.+.... + ......+..+++++.|.+.++..-. .++..+...++|+.|++++|
T Consensus 255 ~l~l~~~~~~~~~~~--~------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n 320 (549)
T 2z81_A 255 EVEFDDCTLNGLGDF--N------------PSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS 320 (549)
T ss_dssp EEEEESCEEECCSCC--C------------CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS
T ss_pred ccccccccccccccc--c------------ccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC
Confidence 333333333221100 0 0001122345666666666554221 12222233456677777777
Q ss_pred ccccCCccc-cCccccceecccCccCCccccc---cccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCcccccc
Q 003936 318 AIRELPEGL-GQLALLSKLELKNCSELEYISS---SIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKL 393 (785)
Q Consensus 318 ~i~~lp~~l-~~l~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l 393 (785)
.+..+|..+ +.+++|++|++++|.+.+.+|. .+..+++|+.|++++|.
T Consensus 321 ~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~---------------------------- 372 (549)
T 2z81_A 321 KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH---------------------------- 372 (549)
T ss_dssp CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC----------------------------
T ss_pred ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc----------------------------
Confidence 776666654 4566777777777666655432 24455555555555552
Q ss_pred CCCCCCccCC---ccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCc
Q 003936 394 NKCSKLESLP---SSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFE 470 (785)
Q Consensus 394 ~~~~~l~~l~---~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~ 470 (785)
+..++ ..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++.+|.
T Consensus 373 -----l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~------------------- 427 (549)
T 2z81_A 373 -----LRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKT------------------- 427 (549)
T ss_dssp -----CCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCT-------------------
T ss_pred -----ccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccc-------------------
Confidence 11111 12444555555555555443 344444444455555555444443332
Q ss_pred cCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCC
Q 003936 471 SLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLS 550 (785)
Q Consensus 471 ~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 550 (785)
.+ .++|+.|++++|.++.++ ..+++|++|+|++|+++.+|. ...++
T Consensus 428 ----------------------------~~--~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~-~~~l~ 473 (549)
T 2z81_A 428 ----------------------------CI--PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPD-ASLFP 473 (549)
T ss_dssp ----------------------------TS--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCC-GGGCT
T ss_pred ----------------------------hh--cCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCC-cccCc
Confidence 11 135666666666666554 467888899999998888886 46788
Q ss_pred CCCEEEcccCCCCCCC-CcCcCCCCCCEEeCCCCCCC
Q 003936 551 SLVSLKLSNNNLERIP-ERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 551 ~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~ 586 (785)
+|+.|+|++|+++++| ..+..+++|+.|++++|++.
T Consensus 474 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 474 VLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp TCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred cCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 9999999999998864 45889999999999999854
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.1e-39 Score=374.58 Aligned_cols=414 Identities=18% Similarity=0.204 Sum_probs=264.5
Q ss_pred cCceEEEcCCCCcc-cccccccCCCCCcEEec-CCCccccCCC-C-----------------------------------
Q 003936 65 ENLVSLKMPGSKVT-QLWDDVQNLVSLKRIDL-KYSKLLTKLP-D----------------------------------- 106 (785)
Q Consensus 65 ~~L~~L~L~~~~i~-~l~~~~~~l~~L~~L~L-s~n~~~~~~~-~----------------------------------- 106 (785)
.+++.|+|+++.+. .+|..+++|++|++|+| ++|.+....+ .
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999988 77888999999999999 7776433321 0
Q ss_pred ----------------Cccccccceecccc--ccCccccccccccCCcccEEecCCCCCCC-----------------cC
Q 003936 107 ----------------LSLAQNLEILDLGY--CSSLTETHSSIQYLNKLEVLDLDRCKSLT-----------------SL 151 (785)
Q Consensus 107 ----------------l~~l~~L~~L~Ls~--n~~~~~~~~~l~~l~~L~~L~L~~~~~~~-----------------~~ 151 (785)
......++.+.+.. |.+.+ +|..++++++|++|+|++|...+ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 01122334444433 44444 77778888888888888766555 16
Q ss_pred CCcc---ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhccccccceeccccc-ccc-ccchhhhc
Q 003936 152 PTSI---HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCK-RLE-NISSSIFK 226 (785)
Q Consensus 152 p~~~---~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~-~~~-~~~~~l~~ 226 (785)
|..+ ++++|++|++++|... ..+|..++++++|+.|++++|+ +.+ .+|..++.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~----------------------~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~ 539 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNM----------------------TQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR 539 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTC----------------------CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHH
T ss_pred ChhhhhccCCCCCEEECcCCCCC----------------------ccChHHHhCCCCCCEEECcCCCCcccccchHHHHh
Confidence 6654 4666777776666433 2345566677777777777776 665 66766665
Q ss_pred ccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCc--ccc
Q 003936 227 LQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPD--ELG 304 (785)
Q Consensus 227 l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~--~l~ 304 (785)
++. .+..++ +|+.|++.+|... .+|. .+.
T Consensus 540 L~~----~~~~l~--------------------------------------------~L~~L~Ls~N~L~-~ip~~~~l~ 570 (876)
T 4ecn_A 540 LAD----DEDTGP--------------------------------------------KIQIFYMGYNNLE-EFPASASLQ 570 (876)
T ss_dssp HHH----CTTTTT--------------------------------------------TCCEEECCSSCCC-BCCCHHHHT
T ss_pred hhh----cccccC--------------------------------------------CccEEEeeCCcCC-ccCChhhhh
Confidence 541 112223 3333333333322 4454 555
Q ss_pred CccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCC-CCEEEeeCCCCCCCCCCCceeccCCCCC
Q 003936 305 NLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKS-VESIEISNCSNLKGFPEIPFCNIDGSGI 383 (785)
Q Consensus 305 ~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~l~~lp~l~~l~l~~~~i 383 (785)
++++|+.|++++|.++.+| .++.+++|++|++++|.+. .+|..+..+++ |+.|++++|.
T Consensus 571 ~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~------------------ 630 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK------------------ 630 (876)
T ss_dssp TCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC------------------
T ss_pred cCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC------------------
Confidence 5566666666666665555 4555666666666665544 55555555555 6666655553
Q ss_pred cccCccccccCCCCCCccCCccccCCC--CCcEEEeccccCCCcCCcc---cC--CcccchhhhccCccccccChhhh-h
Q 003936 384 ERIPSSVLKLNKCSKLESLPSSLCMFK--SLTSLEIIDCKKLERLPDE---LG--NLEALEELRVEGTGIREVPKSLA-Q 455 (785)
Q Consensus 384 ~~lp~~~l~l~~~~~l~~l~~~~~~l~--~L~~L~l~~~~~~~~~p~~---~~--~l~~L~~L~L~~n~i~~lp~~~~-~ 455 (785)
+..+|..+..++ +|+.|++++|.+.+.+|.. +. .+++|+.|++++|.++.+|..+. .
T Consensus 631 ---------------L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~ 695 (876)
T 4ecn_A 631 ---------------LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695 (876)
T ss_dssp ---------------CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHT
T ss_pred ---------------CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHcc
Confidence 112233333332 2555555555555443321 11 22355555566655555555443 2
Q ss_pred h-hhcccccccCCCCccCCccccC--------CCCCCEEEeeCCcCcccCCCccc--cccccceEEecCeeccccCcccC
Q 003936 456 L-ALSKLKLKKCSSFESLPSRLYV--------SKSLTSLEIIDCKNFMRLPDEIG--NLEYLKVLTIKGTAIREVPESLG 524 (785)
Q Consensus 456 l-~L~~L~l~~~~~~~~lp~~~~~--------~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~L~~n~l~~lp~~~~ 524 (785)
+ .|+.|++++|... .+|..+.. +++|+.|++++|++. .+|..+. .+++|+.|+|++|.++.+|..+.
T Consensus 696 l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~ 773 (876)
T 4ecn_A 696 GSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL 773 (876)
T ss_dssp TCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG
T ss_pred CCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhh
Confidence 2 2555555555433 44443332 238999999999887 6787776 89999999999999999998899
Q ss_pred CCCCCcEEEccC------Cccc-cccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCCCCc
Q 003936 525 QLSSLEWLVLSD------NNLQ-IIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 525 ~l~~L~~L~Ls~------n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~lp 589 (785)
.+++|+.|+|++ |++. .+|..+..+++|+.|+|++|++..+|..+. ++|+.|+|++|++..+.
T Consensus 774 ~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp GCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred cCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCccC
Confidence 999999999977 5555 488899999999999999999988998765 69999999999987664
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.9e-39 Score=368.32 Aligned_cols=476 Identities=18% Similarity=0.158 Sum_probs=363.5
Q ss_pred cccceeeeecCCCccccccCC-CCCC-CceEEEEecCCCCccccc---ccccCceEEEcCCCCccccc-ccccCCCCCcE
Q 003936 19 TELRLLKFCGSKNKCMVHSLE-GVPF-TELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLW-DDVQNLVSLKR 92 (785)
Q Consensus 19 ~~Lr~L~l~~~~~~~~~~~~~-~~~~-~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~ 92 (785)
++++.|++++|.+ ..++. .+.. ++|++|++++|.++.++. ..+++|++|++++|.++.++ ..|..+++|++
T Consensus 28 ~~l~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFNPL---RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSCCC---CEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCcc---CccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 5789999999988 34443 4444 999999999999998875 77999999999999999886 56999999999
Q ss_pred EecCCCccccCCC-CCccccccceeccccccCcc-ccccccccCCcccEEecCCCCCCCcCCCcc-ccccc----cEEec
Q 003936 93 IDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLT-ETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYL----KRLVL 165 (785)
Q Consensus 93 L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L----~~L~l 165 (785)
|++++|.+....+ .++.+++|++|++++|.+.. .+|..++++++|++|++++|......|..+ .+++| +.|++
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhccc
Confidence 9999998655544 48999999999999998766 579999999999999999987665556666 77888 89999
Q ss_pred cCCcCCCCCCCccc-cccccccccccccc--cccCcchhccccccceecccccccc-----cc-chhhhccccccccccc
Q 003936 166 RGCSNLKNLPKMTS-CHLRSTLPLLGVGI--EELPSSIKCLSNIGELLIYSCKRLE-----NI-SSSIFKLQFLESIRIH 236 (785)
Q Consensus 166 s~~~~l~~lp~~~~-~~L~~~L~l~~~~i--~~lp~~l~~l~~L~~L~L~~~~~~~-----~~-~~~l~~l~~L~~L~l~ 236 (785)
++|......|.... ..|+ .+++.+|.. ..++..+..++.++.+.+....... .+ ...+..++++ .
T Consensus 185 ~~n~l~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l---~-- 258 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEIRLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL---T-- 258 (570)
T ss_dssp TTCCCCEECTTTTTTCEEE-EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGS---E--
T ss_pred CCCCceecCHHHhccCcce-eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcccccc---c--
Confidence 99864444343333 3577 888887643 3566677788887776665332211 11 1111122111 1
Q ss_pred CCCCCccccCCCcccCCCCCccCCcccccccCC-CCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeecc
Q 003936 237 RCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKC-PRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIID 315 (785)
Q Consensus 237 ~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~ 315 (785)
++.++ +..+ ...+..+..+..+++|+.|++.++.. ..+|..+..+ +|++|+++
T Consensus 259 ----l~~l~--------------------l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-~~l~~~~~~~-~L~~L~l~ 312 (570)
T 2z63_A 259 ----IEEFR--------------------LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFSYNF-GWQHLELV 312 (570)
T ss_dssp ----EEEEE--------------------EEETTEEESCSTTTTGGGTTCSEEEEESCEE-CSCCBCCSCC-CCSEEEEE
T ss_pred ----hhhhh--------------------hhcchhhhhhchhhhcCcCcccEEEecCccc-hhhhhhhccC-CccEEeec
Confidence 11111 2222 22344566677789999999988864 4688888888 99999999
Q ss_pred CcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCC
Q 003936 316 GTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNK 395 (785)
Q Consensus 316 ~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~ 395 (785)
+|.+..+|. ..+++|++|++++|...+..+. ..+++|+.|++++|.. .
T Consensus 313 ~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l-~--------------------------- 360 (570)
T 2z63_A 313 NCKFGQFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGL-S--------------------------- 360 (570)
T ss_dssp SCBCSSCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCC-B---------------------------
T ss_pred cCcccccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCcc-C---------------------------
Confidence 999998886 5788999999999987766654 6788899999888751 0
Q ss_pred CCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccCh--hhhhhh-hcccccccCCCCccC
Q 003936 396 CSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPK--SLAQLA-LSKLKLKKCSSFESL 472 (785)
Q Consensus 396 ~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~--~~~~l~-L~~L~l~~~~~~~~l 472 (785)
.....+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.++..+. .+..+. |+.|++++|...+..
T Consensus 361 --~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 361 --FKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp --EEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred --ccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence 0111244566778888888888876554333 7778888888888888775543 344443 788888888877777
Q ss_pred CccccCCCCCCEEEeeCCcCc-ccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCcccccc-ccccCC
Q 003936 473 PSRLYVSKSLTSLEIIDCKNF-MRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIP-ESLNQL 549 (785)
Q Consensus 473 p~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l 549 (785)
|..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|.++.+ |..+..+++|++|++++|+++++| ..+..+
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence 888888899999999999987 57899999999999999999999988 788999999999999999999976 458999
Q ss_pred CCCCEEEcccCCCCC
Q 003936 550 SSLVSLKLSNNNLER 564 (785)
Q Consensus 550 ~~L~~L~L~~n~l~~ 564 (785)
++|+.|++++|.++.
T Consensus 518 ~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 518 TSLQKIWLHTNPWDC 532 (570)
T ss_dssp TTCCEEECCSSCBCC
T ss_pred cCCcEEEecCCcccC
Confidence 999999999999875
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.3e-39 Score=362.91 Aligned_cols=437 Identities=17% Similarity=0.167 Sum_probs=315.6
Q ss_pred ceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcccc-cccccCCCCCcEEecCC
Q 003936 22 RLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKY 97 (785)
Q Consensus 22 r~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~ 97 (785)
++|++++|.+ ..+|..+. ++|++|++++|.++.++. ..+++|++|++++|+++.+ |..+..+++|++|+|++
T Consensus 3 ~~l~ls~n~l---~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGL---IHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCC---SSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCc---cccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 5789999888 56787666 899999999999998874 7899999999999999977 66799999999999999
Q ss_pred CccccCCCCCccccccceeccccccCcc-ccccccccCCcccEEecCCCCCCCcCCCcc-ccccc--cEEeccCCcC--C
Q 003936 98 SKLLTKLPDLSLAQNLEILDLGYCSSLT-ETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYL--KRLVLRGCSN--L 171 (785)
Q Consensus 98 n~~~~~~~~l~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L--~~L~ls~~~~--l 171 (785)
|++. .+|.. .+++|++|++++|.+.+ .+|..++++++|++|++++|.... ..+ .+++| ++|++++|.. .
T Consensus 79 N~l~-~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 79 NKLV-KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp SCCC-EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred Ccee-ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 9865 45644 89999999999998776 578899999999999999976544 233 67777 9999998865 3
Q ss_pred CCCCCcccc---cccccccccccccc-ccC-cchhccccccceeccccc-------cccccchhhhcccccccccccCCC
Q 003936 172 KNLPKMTSC---HLRSTLPLLGVGIE-ELP-SSIKCLSNIGELLIYSCK-------RLENISSSIFKLQFLESIRIHRCP 239 (785)
Q Consensus 172 ~~lp~~~~~---~L~~~L~l~~~~i~-~lp-~~l~~l~~L~~L~L~~~~-------~~~~~~~~l~~l~~L~~L~l~~~~ 239 (785)
...|..... ... .+++.+|.+. .++ ..+..+++|+.+++++|. ..+.++ .+..+++|+.|+
T Consensus 154 ~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~----- 226 (520)
T 2z7x_B 154 KEDPEGLQDFNTESL-HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLT----- 226 (520)
T ss_dssp SCCTTTTTTCCEEEE-EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEE-----
T ss_pred ccccccccccccceE-EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcc-----
Confidence 333332221 111 2334444432 122 234455666666666554 222222 233333333333
Q ss_pred CCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCC----CCccccCccccceeecc
Q 003936 240 NLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFER----LPDELGNLQALNRLIID 315 (785)
Q Consensus 240 ~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----lp~~l~~l~~L~~L~L~ 315 (785)
+.++...+. ++..+ ..++|++|+++
T Consensus 227 --------------------------------------------------l~~~~l~~~~~~~~~~~~-~~~~L~~L~l~ 255 (520)
T 2z7x_B 227 --------------------------------------------------LNNIETTWNSFIRILQLV-WHTTVWYFSIS 255 (520)
T ss_dssp --------------------------------------------------EEEEEEEHHHHHHHHHHH-HTSSCSEEEEE
T ss_pred --------------------------------------------------ccccccCHHHHHHHHHHh-hhCcccEEEee
Confidence 332221110 00001 12467777777
Q ss_pred Ccccc-cCCccc-----cCccccceecccCccCCcccc-ccccCC---CCCCEEEeeCCCCCCCCCCCceeccCCCCCcc
Q 003936 316 GTAIR-ELPEGL-----GQLALLSKLELKNCSELEYIS-SSIFKL---KSVESIEISNCSNLKGFPEIPFCNIDGSGIER 385 (785)
Q Consensus 316 ~n~i~-~lp~~l-----~~l~~L~~L~l~~~~~~~~~~-~~~~~l---~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~ 385 (785)
+|.++ .+|..+ +.+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|..
T Consensus 256 ~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l------------------- 314 (520)
T 2z7x_B 256 NVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRM------------------- 314 (520)
T ss_dssp EEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCC-------------------
T ss_pred cccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcc-------------------
Confidence 77777 677666 7777777777777766 444 333333 5678888877741
Q ss_pred cCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccC---hhhhhhhhcccc
Q 003936 386 IPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVP---KSLAQLALSKLK 462 (785)
Q Consensus 386 lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp---~~~~~l~L~~L~ 462 (785)
...+ ....+++|+.|++++|.+.+..|..++.+++|++|++++|.++.++ ..+..+
T Consensus 315 --------------~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l------ 373 (520)
T 2z7x_B 315 --------------VHML-CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM------ 373 (520)
T ss_dssp --------------CCCC-CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC------
T ss_pred --------------cccc-chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhC------
Confidence 1111 1147789999999999998888989999999999999999988654 334333
Q ss_pred cccCCCCccCCccccCCCCCCEEEeeCCcCcccCCC-ccccccccceEEecCeecc-ccCcccCCCCCCcEEEccCCccc
Q 003936 463 LKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPD-EIGNLEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSDNNLQ 540 (785)
Q Consensus 463 l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~ 540 (785)
++|++|++++|.+.+.+|. .+..+++|+.|++++|.++ .+|..+. ++|++|++++|+++
T Consensus 374 -----------------~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~ 434 (520)
T 2z7x_B 374 -----------------KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK 434 (520)
T ss_dssp -----------------TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC
T ss_pred -----------------CCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc
Confidence 8999999999999885665 4788899999999999986 4455443 79999999999999
Q ss_pred cccccccCCCCCCEEEcccCCCCCCCCc-CcCCCCCCEEeCCCCCCC
Q 003936 541 IIPESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 541 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~ 586 (785)
.+|..+..+++|+.|++++|+++.+|.. +..+++|++|++++|+++
T Consensus 435 ~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 435 SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCc
Confidence 9999888999999999999999999886 889999999999999865
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.5e-38 Score=370.85 Aligned_cols=427 Identities=14% Similarity=0.151 Sum_probs=253.9
Q ss_pred CceEEEEecCCCCc-cccc--ccccCceEEEc-CCCCcccc-ccc-----------------------------------
Q 003936 44 TELRYFEWHQFPLK-TLNI--LHWENLVSLKM-PGSKVTQL-WDD----------------------------------- 83 (785)
Q Consensus 44 ~~L~~L~l~~~~l~-~lp~--~~l~~L~~L~L-~~~~i~~l-~~~----------------------------------- 83 (785)
.++..|+|+++.+. .+|. ..+++|++|+| ++|.+... +-.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46888888888886 6666 78888888888 66654311 000
Q ss_pred --------------c--cCCCCCcEEecCC--CccccCCC-CCccccccceeccccccCcc-----------------cc
Q 003936 84 --------------V--QNLVSLKRIDLKY--SKLLTKLP-DLSLAQNLEILDLGYCSSLT-----------------ET 127 (785)
Q Consensus 84 --------------~--~~l~~L~~L~Ls~--n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~-----------------~~ 127 (785)
+ .....++.+.+.. |.+.. +| .++.+++|++|+|++|.+.+ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0 1112233333332 55444 55 58888888888888888766 37
Q ss_pred ccccc--cCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhccc
Q 003936 128 HSSIQ--YLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLS 204 (785)
Q Consensus 128 ~~~l~--~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~ 204 (785)
|..++ ++++|++|+|++|...+.+|..+ ++++|++|++++|..+.. ..+|..++.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg--------------------~~iP~~i~~L~ 541 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA--------------------AQLKADWTRLA 541 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH--------------------HHHHHHHHHHH
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc--------------------ccchHHHHhhh
Confidence 88877 88888888888888888888777 788888888888742321 02333333333
Q ss_pred -------cccceeccccccccccch--hhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCC
Q 003936 205 -------NIGELLIYSCKRLENISS--SIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESL 275 (785)
Q Consensus 205 -------~L~~L~L~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~ 275 (785)
+|+.|++++|.+. .+|. .++++++|+.|+++++ .++ .+
T Consensus 542 ~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N-----------~l~---------------------~l 588 (876)
T 4ecn_A 542 DDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHN-----------KVR---------------------HL 588 (876)
T ss_dssp HCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTS-----------CCC---------------------BC
T ss_pred hcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCC-----------Ccc---------------------cc
Confidence 6666666666665 5555 5555555555544443 110 11
Q ss_pred CCCccCCCCCcEEecccCCCCCCCCccccCccc-cceeeccCcccccCCccccCccc--cceecccCccCCccccccc--
Q 003936 276 PSGQCMFKSLTSLEIIDCPNFERLPDELGNLQA-LNRLIIDGTAIRELPEGLGQLAL--LSKLELKNCSELEYISSSI-- 350 (785)
Q Consensus 276 ~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~-L~~L~L~~n~i~~lp~~l~~l~~--L~~L~l~~~~~~~~~~~~~-- 350 (785)
| .++.+++|+.|++.+|... .+|..+..+++ |+.|++++|.++.+|..++.++. |+.|++++|.+.+.+|...
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 2 2223344444444444332 44555555555 55566655555555555444432 5555555555544333211
Q ss_pred -c--CCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccc-cCCCCCcEEEeccccCCCcC
Q 003936 351 -F--KLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSL-CMFKSLTSLEIIDCKKLERL 426 (785)
Q Consensus 351 -~--~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~-~~l~~L~~L~l~~~~~~~~~ 426 (785)
. .+++|+.|++++|. +..+|..+ ..+++|+.|++++|.+. .+
T Consensus 667 l~~~~~~~L~~L~Ls~N~---------------------------------L~~lp~~~~~~l~~L~~L~Ls~N~L~-~i 712 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNE---------------------------------IQKFPTELFATGSPISTIILSNNLMT-SI 712 (876)
T ss_dssp TTTCCCCCEEEEECCSSC---------------------------------CCSCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred hccccCCCcCEEEccCCc---------------------------------CCccCHHHHccCCCCCEEECCCCcCC-cc
Confidence 1 12244444444432 12233322 24555555555555444 33
Q ss_pred CcccC--------CcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCC
Q 003936 427 PDELG--------NLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPD 498 (785)
Q Consensus 427 p~~~~--------~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~ 498 (785)
|..+. ++++|+.|+|++|.++.+|..+.. ..+++|+.|++++|.+.+ +|.
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~---------------------~~l~~L~~L~Ls~N~L~~-lp~ 770 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA---------------------TTLPYLSNMDVSYNCFSS-FPT 770 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST---------------------TTCTTCCEEECCSSCCSS-CCC
T ss_pred ChHHhccccccccccCCccEEECCCCCCccchHHhhh---------------------ccCCCcCEEEeCCCCCCc-cch
Confidence 33221 122555555555555555544330 044888888888888877 687
Q ss_pred ccccccccceEEecC------eecc-ccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCC-CCcCc
Q 003936 499 EIGNLEYLKVLTIKG------TAIR-EVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI-PERLD 570 (785)
Q Consensus 499 ~~~~l~~L~~L~L~~------n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l-p~~l~ 570 (785)
.+..+++|+.|+|++ |.+. .+|..+..+++|+.|+|++|.+..+|..+. ++|+.|+|++|++..+ +..+.
T Consensus 771 ~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~ 848 (876)
T 4ecn_A 771 QPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSVC 848 (876)
T ss_dssp GGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--SSSCEEECCSCTTCEEECGGGH
T ss_pred hhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--CCCCEEECCCCCCCccChHHcc
Confidence 888888888888876 5544 668889999999999999999988998765 6999999999998875 33333
Q ss_pred CCCCCCEEeCCCCC
Q 003936 571 PLSSLKYLDLFENN 584 (785)
Q Consensus 571 ~l~~L~~L~l~~n~ 584 (785)
....+..+.+.+|+
T Consensus 849 ~~~~~~~~~L~~n~ 862 (876)
T 4ecn_A 849 PYIEAGMYVLLYDK 862 (876)
T ss_dssp HHHHTTCCEEECCT
T ss_pred ccccchheeecCCC
Confidence 33334444455554
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=359.24 Aligned_cols=443 Identities=16% Similarity=0.141 Sum_probs=275.7
Q ss_pred EEEEecCCCCcccccccccCceEEEcCCCCccccc-ccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCc
Q 003936 47 RYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLW-DDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSL 124 (785)
Q Consensus 47 ~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~ 124 (785)
++|++++|.++.+|..-.++|++|++++|.++.++ ..+..+++|++|+|++|++....| .+..+++|++|+|++|.+.
T Consensus 3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 82 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82 (520)
T ss_dssp CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence 46788888888888722278888888888887765 457788888888888887666555 5777888888888887644
Q ss_pred cccccccccCCcccEEecCCCCCCC-cCCCcc-ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhc
Q 003936 125 TETHSSIQYLNKLEVLDLDRCKSLT-SLPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKC 202 (785)
Q Consensus 125 ~~~~~~l~~l~~L~~L~L~~~~~~~-~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~ 202 (785)
.+|.. .+++|++|++++|...+ .+|..+ ++++|++|++++|... . ..+..
T Consensus 83 -~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~-----------------------~--~~~~~ 134 (520)
T 2z7x_B 83 -KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-----------------------K--SSVLP 134 (520)
T ss_dssp -EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC-----------------------G--GGGGG
T ss_pred -ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc-----------------------h--hhccc
Confidence 56655 77788888888766554 456666 6777777777776311 1 12344
Q ss_pred cccc--cceecccccc--ccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCC
Q 003936 203 LSNI--GELLIYSCKR--LENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSG 278 (785)
Q Consensus 203 l~~L--~~L~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~ 278 (785)
+++| +.|++++|.+ .+..|..+..+.. +.++ +++++|.+ .+.++
T Consensus 135 l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~-~~l~---------l~l~~n~~--------------------~~~~~-- 182 (520)
T 2z7x_B 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNT-ESLH---------IVFPTNKE--------------------FHFIL-- 182 (520)
T ss_dssp GTTSCEEEEEEEECTTTTSSCCTTTTTTCCE-EEEE---------EECCSSSC--------------------CCCCC--
T ss_pred cccceeeEEEeeccccccccccccccccccc-ceEE---------EEeccCcc--------------------hhhhh--
Confidence 5555 7777777766 4444544443321 1111 11222221 11111
Q ss_pred ccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcc-------cccCCccccCccccceecccCccCCcccccccc
Q 003936 279 QCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTA-------IRELPEGLGQLALLSKLELKNCSELEYISSSIF 351 (785)
Q Consensus 279 ~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~-------i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 351 (785)
+..+.++++|+.|++++|. +......++.+++|+.|++++|.+.+..+..+.
T Consensus 183 ---------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 183 ---------------------DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRIL 241 (520)
T ss_dssp ---------------------CCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred ---------------------hhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHH
Confidence 1223444555555555543 221112344455555555555444332211111
Q ss_pred ---CCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccc-----cCCCCCcEEEeccccCC
Q 003936 352 ---KLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSL-----CMFKSLTSLEIIDCKKL 423 (785)
Q Consensus 352 ---~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~-----~~l~~L~~L~l~~~~~~ 423 (785)
..++|+.|++++|... +.+|..+ ..+++|+.+++++|.+
T Consensus 242 ~~~~~~~L~~L~l~~n~l~--------------------------------~~~p~~~~~~~~~~l~~L~~l~l~~n~~- 288 (520)
T 2z7x_B 242 QLVWHTTVWYFSISNVKLQ--------------------------------GQLDFRDFDYSGTSLKALSIHQVVSDVF- 288 (520)
T ss_dssp HHHHTSSCSEEEEEEEEEE--------------------------------SCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred HHhhhCcccEEEeeccccc--------------------------------CccccchhhcccccCceeEeccccccce-
Confidence 1235555555554310 1222222 4455555555555554
Q ss_pred CcCC-cccCCc---ccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcc--cCC
Q 003936 424 ERLP-DELGNL---EALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFM--RLP 497 (785)
Q Consensus 424 ~~~p-~~~~~l---~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~--~~~ 497 (785)
.+| ..+..+ .+|+.|++++|.+..++..-....++.|++++|...+.+|..+..+++|++|++++|++.+ .+|
T Consensus 289 -~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 367 (520)
T 2z7x_B 289 -GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367 (520)
T ss_dssp -CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred -ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch
Confidence 333 222222 3455555555555443311111125555666665555566666777999999999999986 667
Q ss_pred CccccccccceEEecCeeccc-cCcc-cCCCCCCcEEEccCCcccc-ccccccCCCCCCEEEcccCCCCCCCCcCcCCCC
Q 003936 498 DEIGNLEYLKVLTIKGTAIRE-VPES-LGQLSSLEWLVLSDNNLQI-IPESLNQLSSLVSLKLSNNNLERIPERLDPLSS 574 (785)
Q Consensus 498 ~~~~~l~~L~~L~L~~n~l~~-lp~~-~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~ 574 (785)
..++.+++|+.|++++|.++. +|.. +..+++|++|++++|++++ +|..+. ++|+.|++++|+++.+|..+..+++
T Consensus 368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~ 445 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEA 445 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTT
T ss_pred HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCC
Confidence 788999999999999999997 8764 7889999999999999965 666554 7999999999999999999999999
Q ss_pred CCEEeCCCCCCCCCccc-cccCCCCCCcccccccceee
Q 003936 575 LKYLDLFENNLDRIPEY-LRSFPTSIPSEFTSLRLSVD 611 (785)
Q Consensus 575 L~~L~l~~n~l~~lp~~-~~~~~~~ip~~l~~l~~~l~ 611 (785)
|++|++++|+++.+|.. +.. .++|+.++++-+
T Consensus 446 L~~L~L~~N~l~~l~~~~~~~-----l~~L~~L~l~~N 478 (520)
T 2z7x_B 446 LQELNVASNQLKSVPDGIFDR-----LTSLQKIWLHTN 478 (520)
T ss_dssp CCEEECCSSCCCCCCTTTTTT-----CTTCCEEECCSS
T ss_pred CCEEECCCCcCCccCHHHhcc-----CCcccEEECcCC
Confidence 99999999999999865 211 345666444333
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.3e-36 Score=351.59 Aligned_cols=515 Identities=18% Similarity=0.155 Sum_probs=327.0
Q ss_pred cccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcccccc-cccCCCCCcEEecCCCccccCCC-CCcc
Q 003936 35 VHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLWD-DVQNLVSLKRIDLKYSKLLTKLP-DLSL 109 (785)
Q Consensus 35 ~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls~n~~~~~~~-~l~~ 109 (785)
..+|.++. .++++|++++|.++.+|. ..+++|++|+|++|+|+.++. .|.++++|++|+|++|++....+ .|..
T Consensus 44 ~~vP~~lp-~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~ 122 (635)
T 4g8a_A 44 YKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 122 (635)
T ss_dssp SSCCSSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTT
T ss_pred CccCCCCC-cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcC
Confidence 56777665 678999999999999986 778999999999999998865 48999999999999998665554 4889
Q ss_pred ccccceeccccccCccccccccccCCcccEEecCCCCCCC-cCCCcc-ccccccEEeccCCcCCCCCCCccc--ccc---
Q 003936 110 AQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLT-SLPTSI-HSKYLKRLVLRGCSNLKNLPKMTS--CHL--- 182 (785)
Q Consensus 110 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~--~~L--- 182 (785)
+++|++|+|++|.+.+..+..|+++++|++|++++|.... ..|..+ .+++|++|++++|...+..+.... ..+
T Consensus 123 L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~ 202 (635)
T 4g8a_A 123 LSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 202 (635)
T ss_dssp CTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTC
T ss_pred CCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhh
Confidence 9999999999998766556678999999999999976544 456666 789999999999853332232221 111
Q ss_pred ccccccccccccccCcchhccccccceeccccccccc-cchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCc
Q 003936 183 RSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLEN-ISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPS 261 (785)
Q Consensus 183 ~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~ 261 (785)
...++++.|.+..++........++.+++.++..... .+..+..+..++...+..........+.
T Consensus 203 ~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~-------------- 268 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE-------------- 268 (635)
T ss_dssp CCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS--------------
T ss_pred hhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccc--------------
Confidence 1156677888888887777777777888877755432 2334445555444333211000000000
Q ss_pred ccccccCCCCCCCCCCCccCCCCCcEEecccCCC---CCCCCccccCccccceeeccCcccccCCccccCccccceeccc
Q 003936 262 SELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPN---FERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELK 338 (785)
Q Consensus 262 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~ 338 (785)
......+.....+....+..+.. ....+..+..+.+++.+.+.++.+..++. +....+|+.|++.
T Consensus 269 -----------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~L~~L~l~ 336 (635)
T 4g8a_A 269 -----------KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELV 336 (635)
T ss_dssp -----------CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG-GGSCCCCSEEEEE
T ss_pred -----------cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc-cccchhhhhhhcc
Confidence 00011111222233222222111 11223334455566666666665554443 3445566666666
Q ss_pred CccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEec
Q 003936 339 NCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEII 418 (785)
Q Consensus 339 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~ 418 (785)
+|.+....+ ..+..|+.+++.++.... +.....+++|+.|+++
T Consensus 337 ~~~~~~~~~---~~l~~L~~l~l~~n~~~~----------------------------------~~~~~~l~~L~~L~ls 379 (635)
T 4g8a_A 337 NCKFGQFPT---LKLKSLKRLTFTSNKGGN----------------------------------AFSEVDLPSLEFLDLS 379 (635)
T ss_dssp SCEESSCCC---CBCTTCCEEEEESCCSCC----------------------------------BCCCCBCTTCCEEECC
T ss_pred cccccCcCc---ccchhhhhcccccccCCC----------------------------------Ccccccccccccchhh
Confidence 665443322 234556666666553110 0111234445555555
Q ss_pred cccCCC--cCCcccCCcccchhhhccCccccccChhhhhhh-hcccccccCCCCccCC-ccccCCCCCCEEEeeCCcCcc
Q 003936 419 DCKKLE--RLPDELGNLEALEELRVEGTGIREVPKSLAQLA-LSKLKLKKCSSFESLP-SRLYVSKSLTSLEIIDCKNFM 494 (785)
Q Consensus 419 ~~~~~~--~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~-L~~L~l~~~~~~~~lp-~~~~~~~~L~~L~l~~~~~~~ 494 (785)
+|.+.. ..+..+..+.+|+.+++..+.+..++..+..+. ++.+++.++......+ ..+..+++++.++++.|.+.+
T Consensus 380 ~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~ 459 (635)
T 4g8a_A 380 RNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 459 (635)
T ss_dssp SSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEE
T ss_pred ccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccc
Confidence 544322 223333344445555555554444333333222 4444444444433332 234556889999999999888
Q ss_pred cCCCccccccccceEEecCeecc-c-cCcccCCCCCCcEEEccCCccccc-cccccCCCCCCEEEcccCCCCCCC-CcCc
Q 003936 495 RLPDEIGNLEYLKVLTIKGTAIR-E-VPESLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLKLSNNNLERIP-ERLD 570 (785)
Q Consensus 495 ~~~~~~~~l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp-~~l~ 570 (785)
..+..+..+++|+.|++++|.+. . +|..+..+++|++|+|++|+++++ |..|+++++|+.|+|++|++++++ ..+.
T Consensus 460 ~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~ 539 (635)
T 4g8a_A 460 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 539 (635)
T ss_dssp CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGT
T ss_pred ccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHh
Confidence 88888888999999999988754 3 478888999999999999999886 567889999999999999999874 4578
Q ss_pred CCCCCCEEeCCCCCCCCCccccccCCCCCCcccccccceeeecccc
Q 003936 571 PLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCL 616 (785)
Q Consensus 571 ~l~~L~~L~l~~n~l~~lp~~~~~~~~~ip~~l~~l~~~l~~~~C~ 616 (785)
.+++|++|++++|+|+.+|+. ....+|.+|+.++++-+.+.|.
T Consensus 540 ~l~~L~~L~Ls~N~l~~~~~~---~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 540 CLNSLQVLDYSLNHIMTSKKQ---ELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCSS---CTTCCCTTCCEEECTTCCBCCS
T ss_pred CCCCCCEEECCCCcCCCCCHH---HHHhhhCcCCEEEeeCCCCccc
Confidence 899999999999998877543 1123467788866666666663
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.6e-36 Score=343.69 Aligned_cols=222 Identities=21% Similarity=0.238 Sum_probs=165.5
Q ss_pred cccceeeccCcccc-cCCccc-----cCccccceecccCccCCcccc-ccccC---CCCCCEEEeeCCCCCCCCCCCcee
Q 003936 307 QALNRLIIDGTAIR-ELPEGL-----GQLALLSKLELKNCSELEYIS-SSIFK---LKSVESIEISNCSNLKGFPEIPFC 376 (785)
Q Consensus 307 ~~L~~L~L~~n~i~-~lp~~l-----~~l~~L~~L~l~~~~~~~~~~-~~~~~---l~~L~~L~l~~~~~l~~lp~l~~l 376 (785)
++|++|++++|.++ .+|..+ +.++.|+.+++..+.. .+| ..+.. ..+|+.|++++|.
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~----------- 342 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTP----------- 342 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSC-----------
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCC-----------
Confidence 36777777777776 666655 5555666666555544 333 12221 2567777777764
Q ss_pred ccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhh
Q 003936 377 NIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQL 456 (785)
Q Consensus 377 ~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l 456 (785)
+. ..+ ....+++|+.|++++|.+.+..|..++.+++|++|++++|.++.++...
T Consensus 343 ------~~----------------~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--- 396 (562)
T 3a79_B 343 ------FI----------------HMV-CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVA--- 396 (562)
T ss_dssp ------CC----------------CCC-CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHH---
T ss_pred ------cc----------------ccc-CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccch---
Confidence 11 111 1146789999999999998888888999999999999999988765311
Q ss_pred hhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCC-ccccccccceEEecCeeccc-cCcccCCCCCCcEEEc
Q 003936 457 ALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPD-EIGNLEYLKVLTIKGTAIRE-VPESLGQLSSLEWLVL 534 (785)
Q Consensus 457 ~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~L 534 (785)
..+..+++|++|++++|.+.+.+|. .+..+++|+.|++++|.++. +|..+. ++|++|++
T Consensus 397 -----------------~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L 457 (562)
T 3a79_B 397 -----------------LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL 457 (562)
T ss_dssp -----------------HTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEEC
T ss_pred -----------------hhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEEC
Confidence 1223348999999999998885554 57888999999999999864 344333 68999999
Q ss_pred cCCccccccccccCCCCCCEEEcccCCCCCCCCc-CcCCCCCCEEeCCCCCCC
Q 003936 535 SDNNLQIIPESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 535 s~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~ 586 (785)
++|+++.+|..+..+++|+.|++++|+++.+|.. +..+++|+.|++++|++.
T Consensus 458 ~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 458 HNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 9999999998888999999999999999999887 888999999999999854
No 23
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.9e-36 Score=331.00 Aligned_cols=395 Identities=24% Similarity=0.273 Sum_probs=187.3
Q ss_pred cccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEe
Q 003936 63 HWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLD 141 (785)
Q Consensus 63 ~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ 141 (785)
...+|++|++++|.+..+|.+++++++|++|++++|.+.+.+| .++.+++|+.+++++|.. .++++|+
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~ 77 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELE 77 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEE
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEE
Confidence 3456666777777776667667777777777777776665555 466666665555555431 3456666
Q ss_pred cCCCCCCCcCCCccccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhccccccceeccccccccccc
Q 003936 142 LDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENIS 221 (785)
Q Consensus 142 L~~~~~~~~~p~~~~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~ 221 (785)
+++|. ++.+|.. .++|++|++++|. ++.+|... .+|+ .+++++|.+..+|... ++|++|++++|.+.+ +|
T Consensus 78 l~~~~-l~~lp~~--~~~L~~L~l~~n~-l~~lp~~~-~~L~-~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~-lp 147 (454)
T 1jl5_A 78 LNNLG-LSSLPEL--PPHLESLVASCNS-LTELPELP-QSLK-SLLVDNNNLKALSDLP---PLLEYLGVSNNQLEK-LP 147 (454)
T ss_dssp CTTSC-CSCCCSC--CTTCSEEECCSSC-CSSCCCCC-TTCC-EEECCSSCCSCCCSCC---TTCCEEECCSSCCSS-CC
T ss_pred ecCCc-cccCCCC--cCCCCEEEccCCc-CCcccccc-CCCc-EEECCCCccCcccCCC---CCCCEEECcCCCCCC-Cc
Confidence 66643 3344431 2456666665553 33344322 4455 5555555555554321 466666666665543 33
Q ss_pred hhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCc
Q 003936 222 SSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPD 301 (785)
Q Consensus 222 ~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~ 301 (785)
.++.+++|+.|++++ |.+++ +|.. .++|+.|++.+|... .+|
T Consensus 148 -~~~~l~~L~~L~l~~-----------N~l~~---------------------lp~~---~~~L~~L~L~~n~l~-~l~- 189 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDN-----------NSLKK---------------------LPDL---PPSLEFIAAGNNQLE-ELP- 189 (454)
T ss_dssp -CCTTCTTCCEEECCS-----------SCCSC---------------------CCCC---CTTCCEEECCSSCCS-SCC-
T ss_pred -ccCCCCCCCEEECCC-----------CcCcc---------------------cCCC---cccccEEECcCCcCC-cCc-
Confidence 233333333333333 22211 1111 235566666555332 244
Q ss_pred cccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCC
Q 003936 302 ELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGS 381 (785)
Q Consensus 302 ~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~ 381 (785)
.++++++|++|++++|.++.+|.. .++|++|++++|.+. .+|. +..+++|+.|++++|.
T Consensus 190 ~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~---------------- 248 (454)
T 1jl5_A 190 ELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNL---------------- 248 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSC----------------
T ss_pred cccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCc----------------
Confidence 466666777777777766666543 246666777766544 4553 5566666666666653
Q ss_pred CCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhccc
Q 003936 382 GIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKL 461 (785)
Q Consensus 382 ~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L 461 (785)
+..+|. .+++|+.|++++|.+.+ +|.. +++|+.|++++|.++.+|..
T Consensus 249 -----------------l~~l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~--------- 295 (454)
T 1jl5_A 249 -----------------LKTLPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL--------- 295 (454)
T ss_dssp -----------------CSSCCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC---------
T ss_pred -----------------CCcccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc---------
Confidence 111221 12456666666665443 3332 25566666666665554421
Q ss_pred ccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccc-cccceEEecCeeccccCcccCCCCCCcEEEccCCccc
Q 003936 462 KLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNL-EYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQ 540 (785)
Q Consensus 462 ~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~ 540 (785)
| ++|+.|++++|++.+ ++ .+ ++|+.|++++|.++.+|.. +++|++|++++|+++
T Consensus 296 -----------~------~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~ 350 (454)
T 1jl5_A 296 -----------P------PNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLA 350 (454)
T ss_dssp -----------C------TTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS
T ss_pred -----------C------CcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccccccc---CCcCCEEECCCCccc
Confidence 1 466666666666554 11 12 3667777777777766653 466777777777777
Q ss_pred cccccccCCCCCCEEEcccCCCCC---CCCcCcCC-------------CCCCEEeCCCCCCCCCccccccCCCCCCcccc
Q 003936 541 IIPESLNQLSSLVSLKLSNNNLER---IPERLDPL-------------SSLKYLDLFENNLDRIPEYLRSFPTSIPSEFT 604 (785)
Q Consensus 541 ~lp~~l~~l~~L~~L~L~~n~l~~---lp~~l~~l-------------~~L~~L~l~~n~l~~lp~~~~~~~~~ip~~l~ 604 (785)
.+|. .+++|+.|++++|++++ +|.++..+ ++|++|++++|+++.+|.. |++++
T Consensus 351 ~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~i--------P~sl~ 419 (454)
T 1jl5_A 351 EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI--------PESVE 419 (454)
T ss_dssp CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------------
T ss_pred cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccc--------hhhHh
Confidence 7666 35677777777777665 45555555 7899999999998877765 88888
Q ss_pred cc
Q 003936 605 SL 606 (785)
Q Consensus 605 ~l 606 (785)
.+
T Consensus 420 ~L 421 (454)
T 1jl5_A 420 DL 421 (454)
T ss_dssp --
T ss_pred he
Confidence 73
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.5e-34 Score=334.38 Aligned_cols=498 Identities=18% Similarity=0.143 Sum_probs=317.1
Q ss_pred cccceeeeecCCCccccccCCC-CCC-CceEEEEecCCCCccccc---ccccCceEEEcCCCCccccccc-ccCCCCCcE
Q 003936 19 TELRLLKFCGSKNKCMVHSLEG-VPF-TELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLWDD-VQNLVSLKR 92 (785)
Q Consensus 19 ~~Lr~L~l~~~~~~~~~~~~~~-~~~-~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~ 92 (785)
+++++|+|++|++ ..++.. +.. ++|++|++++|.++.+|. ..+++|++|+|++|+++.+|.+ |.++++|++
T Consensus 52 ~~~~~LdLs~N~i---~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPL---RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCC---CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCC---CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 4789999999998 566654 444 999999999999999987 6799999999999999999754 899999999
Q ss_pred EecCCCccccCCC-CCccccccceeccccccCcc-ccccccccCCcccEEecCCCCCCCcCCCcc-ccccc----cEEec
Q 003936 93 IDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLT-ETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYL----KRLVL 165 (785)
Q Consensus 93 L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~-~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L----~~L~l 165 (785)
|+|++|.+....+ .|+.+++|++|++++|.+.. ..|..++.+++|++|++++|...+..|..+ .+.++ ..+++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 9999998766555 48999999999999998755 568889999999999999987666556555 44443 46777
Q ss_pred cCCcCCCCCCCccc--ccccccccccccccc--ccCcchhccccccceecccccccc------ccchhhhcccccccccc
Q 003936 166 RGCSNLKNLPKMTS--CHLRSTLPLLGVGIE--ELPSSIKCLSNIGELLIYSCKRLE------NISSSIFKLQFLESIRI 235 (785)
Q Consensus 166 s~~~~l~~lp~~~~--~~L~~~L~l~~~~i~--~lp~~l~~l~~L~~L~L~~~~~~~------~~~~~l~~l~~L~~L~l 235 (785)
+.|. +..++.... ..++ .+.+.+|... ..+..+..+..++...+..+.... .....+..+..+....+
T Consensus 209 s~n~-l~~i~~~~~~~~~~~-~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 209 SLNP-MNFIQPGAFKEIRLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp TTCC-CCEECTTTTTTCEEE-EEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred ccCc-ccccCcccccchhhh-hhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 7764 343333322 2233 5555555432 233455666766666554332211 11112222222222222
Q ss_pred cCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeecc
Q 003936 236 HRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIID 315 (785)
Q Consensus 236 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~ 315 (785)
... .... ........+..+.+++.+...++..... ..+.....|+.|++.
T Consensus 287 ~~~-----------~~~~-----------------~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~ 336 (635)
T 4g8a_A 287 RLA-----------YLDY-----------------YLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELV 336 (635)
T ss_dssp EEE-----------CCCS-----------------CEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEE
T ss_pred hhh-----------hhcc-----------------cccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcc
Confidence 111 0000 0011112222344555555554432211 123344556666666
Q ss_pred CcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCC
Q 003936 316 GTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNK 395 (785)
Q Consensus 316 ~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~ 395 (785)
++.+..++. ..++.|+.+++.++...... ....+++|+.+++++|...
T Consensus 337 ~~~~~~~~~--~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~---------------------------- 384 (635)
T 4g8a_A 337 NCKFGQFPT--LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLS---------------------------- 384 (635)
T ss_dssp SCEESSCCC--CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCB----------------------------
T ss_pred cccccCcCc--ccchhhhhcccccccCCCCc--ccccccccccchhhccccc----------------------------
Confidence 666665543 23455666666665433321 2334566666666655310
Q ss_pred CCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccCh--hhhhh-hhcccccccCCCCccC
Q 003936 396 CSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPK--SLAQL-ALSKLKLKKCSSFESL 472 (785)
Q Consensus 396 ~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~--~~~~l-~L~~L~l~~~~~~~~l 472 (785)
.....+..+..+.+|+.+++..+.... .+..+..+++|+.+++.++.....+. .+..+ .++.+++++|......
T Consensus 385 --~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~ 461 (635)
T 4g8a_A 385 --FKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 461 (635)
T ss_dssp --EEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECC
T ss_pred --cccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccc
Confidence 001112222333444444444443222 22233444444444444443332211 11111 1444444444444444
Q ss_pred CccccCCCCCCEEEeeCCcCcc-cCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCcccccc-ccccCC
Q 003936 473 PSRLYVSKSLTSLEIIDCKNFM-RLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIP-ESLNQL 549 (785)
Q Consensus 473 p~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l 549 (785)
+..+..+++|+.|++++|.... ..|..+..+++|++|+|++|.++.+ |..|.++++|++|+|++|+++.++ ..+..+
T Consensus 462 ~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l 541 (635)
T 4g8a_A 462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 541 (635)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTC
T ss_pred ccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCC
Confidence 5555566999999999998654 5788899999999999999999988 678999999999999999999976 568999
Q ss_pred CCCCEEEcccCCCCCC-CCcCcCC-CCCCEEeCCCCCCC
Q 003936 550 SSLVSLKLSNNNLERI-PERLDPL-SSLKYLDLFENNLD 586 (785)
Q Consensus 550 ~~L~~L~L~~n~l~~l-p~~l~~l-~~L~~L~l~~n~l~ 586 (785)
++|+.|+|++|+++++ |..+..+ ++|++|++++|++.
T Consensus 542 ~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 542 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp TTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred CCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 9999999999999986 6678877 68999999999976
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.7e-35 Score=336.43 Aligned_cols=448 Identities=15% Similarity=0.107 Sum_probs=283.0
Q ss_pred CceEEEEecCCCCcccccccccCceEEEcCCCCccccc-ccccCCCCCcEEecCCCccccCCC-CCccccccceeccccc
Q 003936 44 TELRYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLW-DDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYC 121 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~-~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n 121 (785)
...++++++++.++.+|..-.++|++|++++|.++.++ ..+..+++|++|+|++|.+....| .|..+++|++|+|++|
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred CCCcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 44588899999888888833478999999999888775 468888999999999988776666 4888889999999988
Q ss_pred cCccccccccccCCcccEEecCCCCCCC-cCCCcc-ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcc
Q 003936 122 SSLTETHSSIQYLNKLEVLDLDRCKSLT-SLPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSS 199 (785)
Q Consensus 122 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~-~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~ 199 (785)
.+. .+|.. .+++|++|++++|...+ .+|..+ ++++|++|++++|.. .. ..
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~------------------------~~ 162 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQ------------------------LD 162 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CT------------------------TT
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc-cc------------------------Cc
Confidence 754 67766 78888999998876544 344566 788888888887632 11 12
Q ss_pred hhccccc--cceecccccc--ccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCC
Q 003936 200 IKCLSNI--GELLIYSCKR--LENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESL 275 (785)
Q Consensus 200 l~~l~~L--~~L~L~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~ 275 (785)
+..+++| ++|++++|.+ .+..+..+..+.. +.+.+ +++.|.+. ..+
T Consensus 163 ~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~-~~l~l---------~l~~n~~~--------------------~~~ 212 (562)
T 3a79_B 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT-TVLHL---------VFHPNSLF--------------------SVQ 212 (562)
T ss_dssp TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE-EEEEE---------EECSSSCC--------------------CCC
T ss_pred hhhhhhceeeEEEeecccccccccCcccccccCc-ceEEE---------EecCccch--------------------hhh
Confidence 2333444 7777777776 5555544443321 11111 12222221 111
Q ss_pred CC-CccCCCCCcEEecccCCC----CCCCCccccCccccceeeccCcccc-----cCCccccCccccceecccCccCCcc
Q 003936 276 PS-GQCMFKSLTSLEIIDCPN----FERLPDELGNLQALNRLIIDGTAIR-----ELPEGLGQLALLSKLELKNCSELEY 345 (785)
Q Consensus 276 ~~-~~~~l~~L~~L~l~~~~~----~~~lp~~l~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~l~~~~~~~~ 345 (785)
+. ....+++|+.|++.++.. +......+..+++|+.++++++.+. .++..+ ..++|++|++++|.+.+.
T Consensus 213 ~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ 291 (562)
T 3a79_B 213 VNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITER 291 (562)
T ss_dssp CEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSC
T ss_pred hhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeecc
Confidence 11 112344455555544421 1111223444555555555554433 122211 123566666666665555
Q ss_pred ccccc-----cCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCC-cccc---CCCCCcEEE
Q 003936 346 ISSSI-----FKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLP-SSLC---MFKSLTSLE 416 (785)
Q Consensus 346 ~~~~~-----~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~-~~~~---~l~~L~~L~ 416 (785)
+|..+ ..++.|+.+++..+. + .+| ..+. ...+|+.|+
T Consensus 292 ip~~~~~~~~~~L~~L~~~~~~~~~---------------------------------~-~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 292 IDREEFTYSETALKSLMIEHVKNQV---------------------------------F-LFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp CCCCCCCCCSCSCCEEEEEEEEECC---------------------------------C-SSCHHHHHHHHHTCCCSEEE
T ss_pred ccchhhhcccccchheehhhcccce---------------------------------e-ecChhhhhhhhccCcceEEE
Confidence 55544 222222222222221 0 111 0111 124566666
Q ss_pred eccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcc--
Q 003936 417 IIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFM-- 494 (785)
Q Consensus 417 l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~-- 494 (785)
+++|.+..... ...+++|++|++++|.++ +.+|..+..+++|++|++++|++.+
T Consensus 338 l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~----------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~ 393 (562)
T 3a79_B 338 ISDTPFIHMVC--PPSPSSFTFLNFTQNVFT----------------------DSVFQGCSTLKRLQTLILQRNGLKNFF 393 (562)
T ss_dssp EESSCCCCCCC--CSSCCCCCEEECCSSCCC----------------------TTTTTTCCSCSSCCEEECCSSCCCBTT
T ss_pred ccCCCcccccC--ccCCCCceEEECCCCccc----------------------cchhhhhcccCCCCEEECCCCCcCCcc
Confidence 66665432211 145556666666666555 3344445556999999999999876
Q ss_pred cCCCccccccccceEEecCeeccc-cCc-ccCCCCCCcEEEccCCcccc-ccccccCCCCCCEEEcccCCCCCCCCcCcC
Q 003936 495 RLPDEIGNLEYLKVLTIKGTAIRE-VPE-SLGQLSSLEWLVLSDNNLQI-IPESLNQLSSLVSLKLSNNNLERIPERLDP 571 (785)
Q Consensus 495 ~~~~~~~~l~~L~~L~L~~n~l~~-lp~-~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~ 571 (785)
.+|..+.++++|+.|++++|.++. +|. .+..+++|++|++++|++++ +|..+. ++|+.|++++|+++.+|..+..
T Consensus 394 ~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~ 471 (562)
T 3a79_B 394 KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTH 471 (562)
T ss_dssp HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTS
T ss_pred cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcC
Confidence 445678999999999999999997 875 47889999999999999975 555544 7999999999999999999999
Q ss_pred CCCCCEEeCCCCCCCCCccc-cccCCCCCCcccccccceeeeccc
Q 003936 572 LSSLKYLDLFENNLDRIPEY-LRSFPTSIPSEFTSLRLSVDLRNC 615 (785)
Q Consensus 572 l~~L~~L~l~~n~l~~lp~~-~~~~~~~ip~~l~~l~~~l~~~~C 615 (785)
+++|++|++++|+++.+|+. +.. .++|+.++++-+...|
T Consensus 472 l~~L~~L~L~~N~l~~l~~~~~~~-----l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 472 LQALQELNVASNQLKSVPDGVFDR-----LTSLQYIWLHDNPWDC 511 (562)
T ss_dssp SCCCSEEECCSSCCCCCCTTSTTT-----CTTCCCEECCSCCBCC
T ss_pred CCCCCEEECCCCCCCCCCHHHHhc-----CCCCCEEEecCCCcCC
Confidence 99999999999999999875 221 3566664444443333
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.5e-33 Score=309.21 Aligned_cols=374 Identities=18% Similarity=0.178 Sum_probs=236.0
Q ss_pred EEEEecCCCCcccccccccCceEEEcCCCCcccc-cccccCCCCCcEEecCCCccccCCC--CCccccccceeccccccC
Q 003936 47 RYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKYSKLLTKLP--DLSLAQNLEILDLGYCSS 123 (785)
Q Consensus 47 ~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~~--~l~~l~~L~~L~Ls~n~~ 123 (785)
+.++.+++.++.+|. -.++|++|++++|.++.+ |..+.++++|++|+|++|.+...++ .+..+++|++|+|++|.+
T Consensus 13 ~~~~c~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l 91 (455)
T 3v47_A 13 YNAICINRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91 (455)
T ss_dssp TEEECCSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred cccCcCCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence 346667777777776 346788888888887766 5567788888888888887654443 477788888888888776
Q ss_pred ccccccccccCCcccEEecCCCCCCCcCCCc--c-ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcc-
Q 003936 124 LTETHSSIQYLNKLEVLDLDRCKSLTSLPTS--I-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSS- 199 (785)
Q Consensus 124 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~--~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~- 199 (785)
.+..|..++.+++|++|++++|...+..|.. + .+++|++|++++|...... |..
T Consensus 92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~----------------------~~~~ 149 (455)
T 3v47_A 92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ----------------------PASF 149 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCC----------------------CCGG
T ss_pred CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccC----------------------cccc
Confidence 6666777788888888888876554433332 3 5666666666665321111 222
Q ss_pred hhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCc
Q 003936 200 IKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQ 279 (785)
Q Consensus 200 l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~ 279 (785)
+..+++|++|++++|.+.+..+..+..+.
T Consensus 150 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~--------------------------------------------------- 178 (455)
T 3v47_A 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQ--------------------------------------------------- 178 (455)
T ss_dssp GGGCTTCCEEECTTCCBSCCCTTTSGGGT---------------------------------------------------
T ss_pred cCCCCcccEEeCCCCcccccChhhhhccc---------------------------------------------------
Confidence 45566666666666655544443332220
Q ss_pred cCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCcc---------ccCccccceecccCccCCccccccc
Q 003936 280 CMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG---------LGQLALLSKLELKNCSELEYISSSI 350 (785)
Q Consensus 280 ~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~---------l~~l~~L~~L~l~~~~~~~~~~~~~ 350 (785)
..+|+.|++++|.+..++.. +..+++|++|++++|.+.+..|..+
T Consensus 179 --------------------------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 179 --------------------------GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp --------------------------TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred --------------------------cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhh
Confidence 12344444444444433321 2244667777777777666666555
Q ss_pred cCC---CCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCC
Q 003936 351 FKL---KSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLP 427 (785)
Q Consensus 351 ~~l---~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p 427 (785)
... ++|+.|++++|....... ..+.+.. .....-.-...++|+.|++++|.+.+..|
T Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~~~-------~~~~~~~-------------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 233 FDAIAGTKIQSLILSNSYNMGSSF-------GHTNFKD-------------PDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp HHHTTTCCEEEEECTTCTTTSCCT-------TCCSSCC-------------CCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred hccccccceeeEeecccccccccc-------chhhhcc-------------CcccccccccccCceEEEecCccccccch
Confidence 443 667777777665222110 0000000 00000000123455666666655554444
Q ss_pred cccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccc
Q 003936 428 DELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLK 507 (785)
Q Consensus 428 ~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 507 (785)
..++.+ ++|++|++++|.+.+..|..+.++++|+
T Consensus 293 ~~~~~l----------------------------------------------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 326 (455)
T 3v47_A 293 SVFSHF----------------------------------------------TDLEQLTLAQNEINKIDDNAFWGLTHLL 326 (455)
T ss_dssp TTTTTC----------------------------------------------TTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred hhcccC----------------------------------------------CCCCEEECCCCcccccChhHhcCcccCC
Confidence 444443 5666666666666666666777778888
Q ss_pred eEEecCeecccc-CcccCCCCCCcEEEccCCccccc-cccccCCCCCCEEEcccCCCCCCCC-cCcCCCCCCEEeCCCCC
Q 003936 508 VLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLKLSNNNLERIPE-RLDPLSSLKYLDLFENN 584 (785)
Q Consensus 508 ~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~ 584 (785)
.|++++|.++.+ |..+..+++|++|+|++|+++.+ |..+..+++|+.|++++|+++++|. .+..+++|++|++++|+
T Consensus 327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 888888888777 56778899999999999999886 6788999999999999999999865 45889999999999998
Q ss_pred CC
Q 003936 585 LD 586 (785)
Q Consensus 585 l~ 586 (785)
++
T Consensus 407 l~ 408 (455)
T 3v47_A 407 WD 408 (455)
T ss_dssp BC
T ss_pred cc
Confidence 65
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2e-33 Score=310.13 Aligned_cols=376 Identities=23% Similarity=0.234 Sum_probs=238.4
Q ss_pred cccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcccccc
Q 003936 81 WDDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKY 159 (785)
Q Consensus 81 ~~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~ 159 (785)
|+.+ ..++|++|++++|.+ +.+| +++.+++|++|++++|.+.+.+|.+++.+.+|+.+++++|. ..+
T Consensus 5 p~~~-~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~----------~~~ 72 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL----------DRQ 72 (454)
T ss_dssp -------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH----------HHT
T ss_pred cccc-ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh----------ccC
Confidence 3334 358999999999987 6777 69999999999999999888999999999999988888764 256
Q ss_pred ccEEeccCCcCCCCCCCccccccccccccccccccccCcchhccccccceeccccccccccchhhhcccccccccccCCC
Q 003936 160 LKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCP 239 (785)
Q Consensus 160 L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 239 (785)
+++|++++|. ++.+|... .+++ .+++++|.++.+|.. .++|++|++++|.+.+
T Consensus 73 l~~L~l~~~~-l~~lp~~~-~~L~-~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~--------------------- 125 (454)
T 1jl5_A 73 AHELELNNLG-LSSLPELP-PHLE-SLVASCNSLTELPEL---PQSLKSLLVDNNNLKA--------------------- 125 (454)
T ss_dssp CSEEECTTSC-CSCCCSCC-TTCS-EEECCSSCCSSCCCC---CTTCCEEECCSSCCSC---------------------
T ss_pred CCEEEecCCc-cccCCCCc-CCCC-EEEccCCcCCccccc---cCCCcEEECCCCccCc---------------------
Confidence 8888888874 55555532 3445 555555555555532 2444555554443322
Q ss_pred CCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCccc
Q 003936 240 NLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAI 319 (785)
Q Consensus 240 ~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i 319 (785)
. +.. .++|++|++.+|... .+| .++++++|++|++++|++
T Consensus 126 --------------l---------------------~~~---~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l 165 (454)
T 1jl5_A 126 --------------L---------------------SDL---PPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSL 165 (454)
T ss_dssp --------------C---------------------CSC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCC
T ss_pred --------------c---------------------cCC---CCCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcC
Confidence 1 000 135555555555433 355 477777788888888777
Q ss_pred ccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCC
Q 003936 320 RELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKL 399 (785)
Q Consensus 320 ~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l 399 (785)
+.+|..+ ++|++|++++|.+.+ +| .+.++++|+.|++++|. +++
T Consensus 166 ~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~-l~~------------------------------ 209 (454)
T 1jl5_A 166 KKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNS-LKK------------------------------ 209 (454)
T ss_dssp SCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSC-CSS------------------------------
T ss_pred cccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCc-CCc------------------------------
Confidence 7776543 477788888776655 45 46777777777777764 111
Q ss_pred ccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCC
Q 003936 400 ESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVS 479 (785)
Q Consensus 400 ~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~ 479 (785)
+|.. .++|+.|++++|.+. .+|. ++.+++|++|++++|.++.+|... ..++.|++++|...+ +|.. .
T Consensus 210 --l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~l~~~~--~~L~~L~l~~N~l~~-l~~~---~ 276 (454)
T 1jl5_A 210 --LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKTLPDLP--PSLEALNVRDNYLTD-LPEL---P 276 (454)
T ss_dssp --CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSSCCSCC--TTCCEEECCSSCCSC-CCCC---C
T ss_pred --CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCcccccc--cccCEEECCCCcccc-cCcc---c
Confidence 1211 136666666666554 4553 666666666666666666665432 236666666665433 4432 2
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEccc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSN 559 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 559 (785)
++|++|++++|.+.+. |.. .++|+.|++++|.++.++.. .++|++|++++|+++++|.. +++|+.|++++
T Consensus 277 ~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~ 346 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPAL---PPRLERLIASF 346 (454)
T ss_dssp TTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCS
T ss_pred CcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccccccc---CCcCCEEECCC
Confidence 7899999999998762 211 26899999999999987642 25899999999999998875 58999999999
Q ss_pred CCCCCCCCcCcCCCCCCEEeCCCCCCCCCccccccCCCCCCccccc
Q 003936 560 NNLERIPERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTS 605 (785)
Q Consensus 560 n~l~~lp~~l~~l~~L~~L~l~~n~l~~lp~~~~~~~~~ip~~l~~ 605 (785)
|+++++|. .+++|++|++++|+++.+|.. |.++..
T Consensus 347 N~l~~lp~---~l~~L~~L~L~~N~l~~l~~i--------p~~l~~ 381 (454)
T 1jl5_A 347 NHLAEVPE---LPQNLKQLHVEYNPLREFPDI--------PESVED 381 (454)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCCSSCCCC--------CTTCCE
T ss_pred Cccccccc---hhhhccEEECCCCCCCcCCCC--------hHHHHh
Confidence 99999998 478999999999999887765 666655
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.5e-33 Score=307.99 Aligned_cols=219 Identities=24% Similarity=0.360 Sum_probs=151.7
Q ss_pred CccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCc
Q 003936 305 NLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIE 384 (785)
Q Consensus 305 ~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~ 384 (785)
++++|++|++++|.++.++. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~------------------- 232 (466)
T 1o6v_A 175 NLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ------------------- 232 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-------------------
T ss_pred cCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC-------------------
Confidence 34444555555554444432 4455555555555555444333 4445556666655553
Q ss_pred ccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccc
Q 003936 385 RIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLK 464 (785)
Q Consensus 385 ~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~ 464 (785)
+..+ ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.++. +..+
T Consensus 233 --------------l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l-------- 286 (466)
T 1o6v_A 233 --------------LKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGL-------- 286 (466)
T ss_dssp --------------CCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTC--------
T ss_pred --------------cccc-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc-ccCC--------
Confidence 1111 134556677777777776655433 6677777777777777776554 2222
Q ss_pred cCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccc
Q 003936 465 KCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPE 544 (785)
Q Consensus 465 ~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~ 544 (785)
++|+.|++++|++.+..+ +..+++|+.|++++|.++.++. +..+++|++|++++|.+++++
T Consensus 287 ---------------~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~- 347 (466)
T 1o6v_A 287 ---------------TALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS- 347 (466)
T ss_dssp ---------------TTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-
T ss_pred ---------------CccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCch-
Confidence 788888888888766443 6788889999999998888765 788999999999999998874
Q ss_pred cccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCCCCccc
Q 003936 545 SLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 545 ~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~lp~~ 591 (785)
.+..+++|+.|++++|+++++++ +..+++|+.|++++|+++.+|..
T Consensus 348 ~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 348 SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBC
T ss_pred hhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchh
Confidence 68899999999999999998755 88999999999999998877654
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.9e-31 Score=297.02 Aligned_cols=347 Identities=21% Similarity=0.313 Sum_probs=231.7
Q ss_pred CceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceecccccc
Q 003936 44 TELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCS 122 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~ 122 (785)
++++.|+++++.++.+|. ..+++|++|++++|.++.++. +..+++|++|++++|.+....+ +..+++|++|++++|.
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 123 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC
Confidence 678888888888888888 888899999999998888876 8888999999999887655444 8888899999999887
Q ss_pred CccccccccccCCcccEEecCCCCCCCcCCCccccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhc
Q 003936 123 SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKC 202 (785)
Q Consensus 123 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~ 202 (785)
+.. ++. +..+++|++|++++|. +..++....+++|++|+++++ +.. ++ .+.+
T Consensus 124 l~~-~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~~--~~~----------------------~~-~~~~ 175 (466)
T 1o6v_A 124 ITD-IDP-LKNLTNLNRLELSSNT-ISDISALSGLTSLQQLSFGNQ--VTD----------------------LK-PLAN 175 (466)
T ss_dssp CCC-CGG-GTTCTTCSEEEEEEEE-ECCCGGGTTCTTCSEEEEEES--CCC----------------------CG-GGTT
T ss_pred CCC-ChH-HcCCCCCCEEECCCCc-cCCChhhccCCcccEeecCCc--ccC----------------------ch-hhcc
Confidence 544 343 8888999999998865 344554337777887777531 111 11 1455
Q ss_pred cccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCC
Q 003936 203 LSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMF 282 (785)
Q Consensus 203 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l 282 (785)
+++|+.|++++|.+... +
T Consensus 176 l~~L~~L~l~~n~l~~~-~------------------------------------------------------------- 193 (466)
T 1o6v_A 176 LTTLERLDISSNKVSDI-S------------------------------------------------------------- 193 (466)
T ss_dssp CTTCCEEECCSSCCCCC-G-------------------------------------------------------------
T ss_pred CCCCCEEECcCCcCCCC-h-------------------------------------------------------------
Confidence 56666666666643321 0
Q ss_pred CCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEee
Q 003936 283 KSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEIS 362 (785)
Q Consensus 283 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 362 (785)
.+..+++|++|++++|.+..++. ++.+++|++|++++|.+.+. ..+..+++|+.|+++
T Consensus 194 -------------------~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~ 251 (466)
T 1o6v_A 194 -------------------VLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA 251 (466)
T ss_dssp -------------------GGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred -------------------hhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECC
Confidence 12223334444444444443332 33444444444444443321 123444455555554
Q ss_pred CCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhcc
Q 003936 363 NCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVE 442 (785)
Q Consensus 363 ~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~ 442 (785)
+|. +..++. +..+++|+.|++++|.+.+..+ +..+++|+.|+++
T Consensus 252 ~n~---------------------------------l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 252 NNQ---------------------------------ISNLAP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295 (466)
T ss_dssp SSC---------------------------------CCCCGG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred CCc---------------------------------cccchh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcC
Confidence 442 111111 4455666666666665554332 5666777777777
Q ss_pred CccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcc
Q 003936 443 GTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPES 522 (785)
Q Consensus 443 ~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~ 522 (785)
+|.++.++. +..+ ++|+.|++++|++.+..| +..+++|+.|++++|.++.++ .
T Consensus 296 ~n~l~~~~~-~~~l-----------------------~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~ 348 (466)
T 1o6v_A 296 ENQLEDISP-ISNL-----------------------KNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVS-S 348 (466)
T ss_dssp SSCCSCCGG-GGGC-----------------------TTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCG-G
T ss_pred CCcccCchh-hcCC-----------------------CCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCch-h
Confidence 777666543 2222 788888888888776655 678888999999999888874 5
Q ss_pred cCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCc
Q 003936 523 LGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPER 568 (785)
Q Consensus 523 ~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~ 568 (785)
+..+++|+.|++++|++++++. +..+++|+.|++++|+++.+|..
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~ 393 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVN 393 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBC
T ss_pred hccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchh
Confidence 8889999999999999988665 88999999999999999988764
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.98 E-value=1.1e-30 Score=290.67 Aligned_cols=370 Identities=16% Similarity=0.131 Sum_probs=279.6
Q ss_pred ceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcc-cc-cccccCCCCCcEEecC
Q 003936 22 RLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVT-QL-WDDVQNLVSLKRIDLK 96 (785)
Q Consensus 22 r~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~-~l-~~~~~~l~~L~~L~Ls 96 (785)
+.++.+++.+ ..+|. +. ++|++|++++|.++.++. ..+++|++|++++|.+. .+ +..+..+++|++|+|+
T Consensus 13 ~~~~c~~~~l---~~lp~-l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGL---HQVPE-LP-AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCC---SSCCC-CC-TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCc---ccCCC-CC-CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 3455566555 55666 22 789999999999987743 78999999999999886 55 4558899999999999
Q ss_pred CCccccCCC-CCccccccceeccccccCccccccc--cccCCcccEEecCCCCCCCcCCCc-c-ccccccEEeccCCcCC
Q 003936 97 YSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSS--IQYLNKLEVLDLDRCKSLTSLPTS-I-HSKYLKRLVLRGCSNL 171 (785)
Q Consensus 97 ~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~--l~~l~~L~~L~L~~~~~~~~~p~~-~-~l~~L~~L~ls~~~~l 171 (785)
+|.+....| .+..+++|++|++++|.+.+..+.. ++.+++|++|++++|...+..|.. + ++++|++|++++|...
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 998777766 5889999999999999877656555 889999999999998776666765 4 8899999999998655
Q ss_pred CCCCCccc----cccccccccccccccccCcc---------hhccccccceeccccccccccchhhhcc---cccccccc
Q 003936 172 KNLPKMTS----CHLRSTLPLLGVGIEELPSS---------IKCLSNIGELLIYSCKRLENISSSIFKL---QFLESIRI 235 (785)
Q Consensus 172 ~~lp~~~~----~~L~~~L~l~~~~i~~lp~~---------l~~l~~L~~L~L~~~~~~~~~~~~l~~l---~~L~~L~l 235 (785)
...|.... ..++ .++++++.+..++.. +..+++|++|++++|.+.+..+..+... ++|+.|++
T Consensus 168 ~~~~~~l~~l~~~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 168 SICEEDLLNFQGKHFT-LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp CCCTTTSGGGTTCEEE-EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred ccChhhhhcccccccc-ccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 54444332 4666 888888888877643 3466899999999999998888777655 66666666
Q ss_pred cCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCcc--CCCCCcEEecccCCCCCCCCccccCccccceee
Q 003936 236 HRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQC--MFKSLTSLEIIDCPNFERLPDELGNLQALNRLI 313 (785)
Q Consensus 236 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~ 313 (785)
+++..... .+..+.+. ...+..+. ..++|+.|++.+|...+..|..+..+++|++|+
T Consensus 247 ~~~~~~~~-~~~~~~~~--------------------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 305 (455)
T 3v47_A 247 SNSYNMGS-SFGHTNFK--------------------DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305 (455)
T ss_dssp TTCTTTSC-CTTCCSSC--------------------CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccc-ccchhhhc--------------------cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEE
Confidence 65532211 11111110 11111111 246899999999888888888899999999999
Q ss_pred ccCcccccC-CccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccc
Q 003936 314 IDGTAIREL-PEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLK 392 (785)
Q Consensus 314 L~~n~i~~l-p~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~ 392 (785)
+++|.++.+ |..++.+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 306 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~--------------------------- 358 (455)
T 3v47_A 306 LAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH--------------------------- 358 (455)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSC---------------------------
T ss_pred CCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCc---------------------------
Confidence 999999866 4468889999999999998877778888889999999998885
Q ss_pred cCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc-ccC
Q 003936 393 LNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR-EVP 450 (785)
Q Consensus 393 l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~-~lp 450 (785)
.....|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|+++ ..|
T Consensus 359 -----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 359 -----IRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp -----CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred -----ccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 11123556778899999999999888766667888999999999999988 444
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=3e-31 Score=293.01 Aligned_cols=222 Identities=15% Similarity=0.124 Sum_probs=137.9
Q ss_pred CceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceecccccc
Q 003936 44 TELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCS 122 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~ 122 (785)
++|++|++++|.++.+|. ..+++|++|++++|.++.++ +..+++|++|++++|.+.. ++ ++.+++|++|++++|.
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~-~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD-VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTCCEEECCSSC
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee-cCCCCcCCEEECCCCc
Confidence 667777777777777766 77777777777777777764 6777777777777776544 33 7777777777777776
Q ss_pred CccccccccccCCcccEEecCCCCCCCcCCCccccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhc
Q 003936 123 SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKC 202 (785)
Q Consensus 123 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~ 202 (785)
+.+ ++ ++.+++|++|++++|...+ ++ ...+++|++|++++|..++.++ ++.
T Consensus 118 l~~-l~--~~~l~~L~~L~l~~N~l~~-l~-l~~l~~L~~L~l~~n~~~~~~~------------------------~~~ 168 (457)
T 3bz5_A 118 LTK-LD--VSQNPLLTYLNCARNTLTE-ID-VSHNTQLTELDCHLNKKITKLD------------------------VTP 168 (457)
T ss_dssp CSC-CC--CTTCTTCCEEECTTSCCSC-CC-CTTCTTCCEEECTTCSCCCCCC------------------------CTT
T ss_pred CCe-ec--CCCCCcCCEEECCCCccce-ec-cccCCcCCEEECCCCCcccccc------------------------ccc
Confidence 544 33 7777777777777754333 43 1267777777777775444331 344
Q ss_pred cccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCC
Q 003936 203 LSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMF 282 (785)
Q Consensus 203 l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l 282 (785)
+++|+.|++++|.+.+ ++ +..+++|+.+++++|.+++.
T Consensus 169 l~~L~~L~ls~n~l~~-l~-------------l~~l~~L~~L~l~~N~l~~~---------------------------- 206 (457)
T 3bz5_A 169 QTQLTTLDCSFNKITE-LD-------------VSQNKLLNRLNCDTNNITKL---------------------------- 206 (457)
T ss_dssp CTTCCEEECCSSCCCC-CC-------------CTTCTTCCEEECCSSCCSCC----------------------------
T ss_pred CCcCCEEECCCCccce-ec-------------cccCCCCCEEECcCCcCCee----------------------------
Confidence 5566666666665433 11 22333333333333333211
Q ss_pred CCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEee
Q 003936 283 KSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEIS 362 (785)
Q Consensus 283 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 362 (785)
.++.+++|++|++++|+++.+| ++.+++|++|++++|.+.+.. ...+++|+.|+++
T Consensus 207 -------------------~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 207 -------------------DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCI 262 (457)
T ss_dssp -------------------CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECT
T ss_pred -------------------ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEecc
Confidence 1445566777777777777766 666777777777777655532 3455666666655
Q ss_pred CC
Q 003936 363 NC 364 (785)
Q Consensus 363 ~~ 364 (785)
++
T Consensus 263 ~n 264 (457)
T 3bz5_A 263 QT 264 (457)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=1.4e-30 Score=287.74 Aligned_cols=99 Identities=24% Similarity=0.224 Sum_probs=63.7
Q ss_pred ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceeccccccCccccccccccCCcccEEe
Q 003936 62 LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLD 141 (785)
Q Consensus 62 ~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ 141 (785)
..+++|++|++++|.++.+| ++..+++|++|+|++|.+.. +| ++.+++|++|++++|.+.+ ++ ++.+++|++|+
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~-~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD-LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred hHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec-cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEE
Confidence 55677777777777777765 57777777777777776544 33 6777777777777776444 32 66777777777
Q ss_pred cCCCCCCCcCCCccccccccEEeccCC
Q 003936 142 LDRCKSLTSLPTSIHSKYLKRLVLRGC 168 (785)
Q Consensus 142 L~~~~~~~~~p~~~~l~~L~~L~ls~~ 168 (785)
+++|.. +.+| ...+++|++|++++|
T Consensus 113 L~~N~l-~~l~-~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 113 CDTNKL-TKLD-VSQNPLLTYLNCARN 137 (457)
T ss_dssp CCSSCC-SCCC-CTTCTTCCEEECTTS
T ss_pred CCCCcC-Ceec-CCCCCcCCEEECCCC
Confidence 777533 3333 115555666655554
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.2e-29 Score=271.44 Aligned_cols=103 Identities=29% Similarity=0.352 Sum_probs=80.0
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccc-cccccCCCCCCEEEcc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLKLS 558 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~ 558 (785)
++|++|++++|.+... ..+..+++|+.|++++|.++.++ .+..+++|++|++++|.++.. |..++.+++|+.|+++
T Consensus 243 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~ 319 (347)
T 4fmz_A 243 SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLS 319 (347)
T ss_dssp TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECC
T ss_pred CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEcc
Confidence 5666666666655442 34667778888888888888774 478889999999999999874 5668899999999999
Q ss_pred cCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 559 NNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 559 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
+|+++.+++ +..+++|++|++++|+++
T Consensus 320 ~n~l~~~~~-~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 320 QNHITDIRP-LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SSSCCCCGG-GGGCTTCSEESSSCC---
T ss_pred CCccccccC-hhhhhccceeehhhhccc
Confidence 999998765 888999999999999875
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=2.1e-29 Score=269.60 Aligned_cols=102 Identities=20% Similarity=0.211 Sum_probs=53.4
Q ss_pred CceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCCCCccccccceecccccc
Q 003936 44 TELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCS 122 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~ 122 (785)
++|++|+++++.+..++. ..+++|++|++++|.++.++. +..+++|++|++++|.+. .++.+..+++|++|++++|.
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~-~~~~~~~l~~L~~L~l~~n~ 121 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKIT-DISALQNLTNLRELYLNEDN 121 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTCSEEECTTSC
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCccc-CchHHcCCCcCCEEECcCCc
Confidence 455555555555555555 555556666666655555544 555555556655555432 23445555555555555554
Q ss_pred CccccccccccCCcccEEecCCCCCCC
Q 003936 123 SLTETHSSIQYLNKLEVLDLDRCKSLT 149 (785)
Q Consensus 123 ~~~~~~~~l~~l~~L~~L~L~~~~~~~ 149 (785)
+.. ++. +..+++|++|++++|....
T Consensus 122 i~~-~~~-~~~l~~L~~L~l~~n~~~~ 146 (347)
T 4fmz_A 122 ISD-ISP-LANLTKMYSLNLGANHNLS 146 (347)
T ss_dssp CCC-CGG-GTTCTTCCEEECTTCTTCC
T ss_pred ccC-chh-hccCCceeEEECCCCCCcc
Confidence 322 222 4455555555555544333
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=3.8e-29 Score=279.79 Aligned_cols=85 Identities=22% Similarity=0.211 Sum_probs=60.2
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCccccccc-cccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L 557 (785)
++|+.|++++|.+.+..+..+..+++|+.|+|++|.++.+ |..+..+++|++|+|++|+++.+|. .+..+++|+.|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 327 (477)
T 2id5_A 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327 (477)
T ss_dssp TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEEC
T ss_pred cccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEc
Confidence 5666666666666655556666777777777777777766 5667777777888888887777664 4677778888888
Q ss_pred ccCCCCC
Q 003936 558 SNNNLER 564 (785)
Q Consensus 558 ~~n~l~~ 564 (785)
++|.+..
T Consensus 328 ~~N~l~c 334 (477)
T 2id5_A 328 DSNPLAC 334 (477)
T ss_dssp CSSCEEC
T ss_pred cCCCccC
Confidence 8887763
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=8.2e-29 Score=277.10 Aligned_cols=108 Identities=27% Similarity=0.337 Sum_probs=87.3
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCccccc-cccccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L 557 (785)
.+|+.|++++|.+....+..+..+++|+.|+|++|.++.++ ..+..+++|++|+|++|+++.+ |..+..+++|+.|+|
T Consensus 224 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (477)
T 2id5_A 224 LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303 (477)
T ss_dssp CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEEC
T ss_pred ccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEEC
Confidence 46667777777665443356778899999999999998874 5688899999999999999885 577889999999999
Q ss_pred ccCCCCCCCC-cCcCCCCCCEEeCCCCCCCC
Q 003936 558 SNNNLERIPE-RLDPLSSLKYLDLFENNLDR 587 (785)
Q Consensus 558 ~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~ 587 (785)
++|+++.+|. .+..+++|+.|++++|++..
T Consensus 304 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 304 SGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred CCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 9999998765 46788999999999998654
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=8.3e-29 Score=269.32 Aligned_cols=260 Identities=20% Similarity=0.205 Sum_probs=151.5
Q ss_pred CCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCcc-ccCccccceecccCccCCccccccccCCCCCCEEE
Q 003936 282 FKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSSIFKLKSVESIE 360 (785)
Q Consensus 282 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 360 (785)
+++|++|++.+|...+..|..+.++++|++|++++|.++.+|.. ++.+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE
Confidence 44444444444443344455577788888888888888877766 47788888888888877776677777788888888
Q ss_pred eeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhh
Q 003936 361 ISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELR 440 (785)
Q Consensus 361 l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 440 (785)
+++|. +..+ .+..+++|+.|++++|.+.+ +...++|++|+
T Consensus 172 l~~n~---------------------------------l~~~--~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~ 211 (390)
T 3o6n_A 172 LSSNR---------------------------------LTHV--DLSLIPSLFHANVSYNLLST-----LAIPIAVEELD 211 (390)
T ss_dssp CCSSC---------------------------------CSBC--CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEE
T ss_pred CCCCc---------------------------------CCcc--ccccccccceeecccccccc-----cCCCCcceEEE
Confidence 87774 1111 13345666666666665433 22234566666
Q ss_pred ccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC
Q 003936 441 VEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP 520 (785)
Q Consensus 441 L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp 520 (785)
+++|.++.+|.... ..++.|++++|...+. ..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.++.+|
T Consensus 212 l~~n~l~~~~~~~~-~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 288 (390)
T 3o6n_A 212 ASHNSINVVRGPVN-VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 288 (390)
T ss_dssp CCSSCCCEEECCCC-SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE
T ss_pred CCCCeeeecccccc-ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC
Confidence 66666665543221 1233333333332221 22333455666666666555555555555666666666666665555
Q ss_pred cccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 521 ESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 521 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
..+..+++|++|++++|+++.+|..+..+++|+.|++++|+++.+| +..+++|+.|++++|+++
T Consensus 289 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 289 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred cccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCcc
Confidence 5555555666666666665555555555556666666666655554 445555666666665543
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=5.3e-28 Score=277.57 Aligned_cols=260 Identities=20% Similarity=0.201 Sum_probs=165.9
Q ss_pred CCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCcc-ccCccccceecccCccCCccccccccCCCCCCEEE
Q 003936 282 FKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSSIFKLKSVESIE 360 (785)
Q Consensus 282 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 360 (785)
+++|+.|++.+|...+..|..|+++++|++|++++|.++.+|.. |+.+++|++|++++|.+.+..|..+..+++|+.|+
T Consensus 98 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ 177 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence 44444444444443344455577788888888888888877765 57788888888888887777777778888888888
Q ss_pred eeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhh
Q 003936 361 ISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELR 440 (785)
Q Consensus 361 l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 440 (785)
+++|. +..++ +..+++|+.|++++|.+.+ +...++|+.|+
T Consensus 178 L~~N~---------------------------------l~~~~--~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ 217 (597)
T 3oja_B 178 LSSNR---------------------------------LTHVD--LSLIPSLFHANVSYNLLST-----LAIPIAVEELD 217 (597)
T ss_dssp CTTSC---------------------------------CSBCC--GGGCTTCSEEECCSSCCSE-----EECCTTCSEEE
T ss_pred CcCCC---------------------------------CCCcC--hhhhhhhhhhhcccCcccc-----ccCCchhheee
Confidence 87774 11111 3355667777777765443 23345677777
Q ss_pred ccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC
Q 003936 441 VEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP 520 (785)
Q Consensus 441 L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp 520 (785)
+++|.++.++..+. ..|+.|++++|...+ +..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.++.+|
T Consensus 218 ls~n~l~~~~~~~~-~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 294 (597)
T 3oja_B 218 ASHNSINVVRGPVN-VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN 294 (597)
T ss_dssp CCSSCCCEEECSCC-SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE
T ss_pred ccCCcccccccccC-CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC
Confidence 77777665554322 234444444444333 233444566777777776666666666666666777777776666666
Q ss_pred cccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 521 ESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 521 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|+++.+| +..+++|+.|++++|++.
T Consensus 295 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 295 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred cccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCC
Confidence 6666666677777777766666666666666777777776666664 455666666776666643
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=6.2e-28 Score=262.40 Aligned_cols=106 Identities=19% Similarity=0.246 Sum_probs=66.3
Q ss_pred ccccCceEEEcCCCCccccccc-ccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCccccccccccCCcccE
Q 003936 62 LHWENLVSLKMPGSKVTQLWDD-VQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEV 139 (785)
Q Consensus 62 ~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~ 139 (785)
..+.++++|+++++.++.+|.. +..+++|++|+|++|.+....+ .+..+++|++|++++|.+.+..|..++.+++|++
T Consensus 42 ~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 4456666666666666666654 4666667777776666554444 4666667777777766655555556666777777
Q ss_pred EecCCCCCCCcCCCcc--ccccccEEeccCC
Q 003936 140 LDLDRCKSLTSLPTSI--HSKYLKRLVLRGC 168 (785)
Q Consensus 140 L~L~~~~~~~~~p~~~--~l~~L~~L~ls~~ 168 (785)
|++++|. ++.+|..+ .+++|++|++++|
T Consensus 122 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 122 LVLERND-LSSLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred EECCCCc-cCcCCHHHhcCCCCCcEEECCCC
Confidence 7777653 33455443 5666777666665
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.3e-27 Score=272.28 Aligned_cols=82 Identities=26% Similarity=0.267 Sum_probs=60.5
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEccc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSN 559 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 559 (785)
++|+.|++++|.+.+ +|..+..+++|+.|+|++|.++.+|..+..+++|+.|+|++|.++.+| +..+++|+.|++++
T Consensus 278 ~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 278 QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSH 354 (597)
T ss_dssp SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCS
T ss_pred cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeC
Confidence 555666666655544 344455677788888888888888877888888888888888888775 66778888888888
Q ss_pred CCCCC
Q 003936 560 NNLER 564 (785)
Q Consensus 560 n~l~~ 564 (785)
|.+..
T Consensus 355 N~~~~ 359 (597)
T 3oja_B 355 NDWDC 359 (597)
T ss_dssp SCEEH
T ss_pred CCCCC
Confidence 88763
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.94 E-value=3.6e-26 Score=242.59 Aligned_cols=155 Identities=23% Similarity=0.298 Sum_probs=86.0
Q ss_pred ccCCCCCcEEEeccccCC--CcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCC
Q 003936 406 LCMFKSLTSLEIIDCKKL--ERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLT 483 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~--~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~ 483 (785)
+..+++|+.|++++|.+. +..+..+..+ +|+.|++++|.++.+|..+. ++|+
T Consensus 143 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~-------------------------~~L~ 196 (332)
T 2ft3_A 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP-------------------------ETLN 196 (332)
T ss_dssp GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC-------------------------SSCS
T ss_pred hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc-------------------------CCCC
Confidence 456666667777666653 2455556555 67777777777666664432 3455
Q ss_pred EEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCC
Q 003936 484 SLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNL 562 (785)
Q Consensus 484 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l 562 (785)
+|++++|.+.+..+..+..+++|+.|++++|.++.++ ..+..+++|++|++++|+++.+|..+..+++|+.|++++|++
T Consensus 197 ~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 197 ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp CCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCC
Confidence 5555555555544455555555555555555555543 245555555555555555555555555555555555555555
Q ss_pred CCCCC-cCcC------CCCCCEEeCCCCCCC
Q 003936 563 ERIPE-RLDP------LSSLKYLDLFENNLD 586 (785)
Q Consensus 563 ~~lp~-~l~~------l~~L~~L~l~~n~l~ 586 (785)
+.+|. .+.. ..+|+.|++++|++.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred CccChhHccccccccccccccceEeecCccc
Confidence 55432 1221 244555555555543
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=3.1e-27 Score=248.08 Aligned_cols=250 Identities=20% Similarity=0.288 Sum_probs=177.3
Q ss_pred CCCcEEecccCCCCC--CCCccccCccccceeeccC-cccc-cCCccccCccccceecccCccCCccccccccCCCCCCE
Q 003936 283 KSLTSLEIIDCPNFE--RLPDELGNLQALNRLIIDG-TAIR-ELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVES 358 (785)
Q Consensus 283 ~~L~~L~l~~~~~~~--~lp~~l~~l~~L~~L~L~~-n~i~-~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 358 (785)
.+++.|++.++...+ .+|..+.++++|++|++++ |.+. .+|..++.+++|++|++++|.+.+.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456666666666555 5666666677777777764 5555 55666666677777777776666666666666666666
Q ss_pred EEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcc-cch
Q 003936 359 IEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLE-ALE 437 (785)
Q Consensus 359 L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~-~L~ 437 (785)
|++++|. ....+|..+..+++|+.|++++|.+.+.+|..+..++ +|+
T Consensus 130 L~Ls~N~--------------------------------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 130 LDFSYNA--------------------------------LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177 (313)
T ss_dssp EECCSSE--------------------------------EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred EeCCCCc--------------------------------cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence 6666653 1113445566666666666666666666666666665 666
Q ss_pred hhhccCcccc-ccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeec
Q 003936 438 ELRVEGTGIR-EVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAI 516 (785)
Q Consensus 438 ~L~L~~n~i~-~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l 516 (785)
.|++++|.++ .+|..+..+ + |++|++++|.+.+..|..+..+++|+.|++++|.+
T Consensus 178 ~L~L~~N~l~~~~~~~~~~l-----------------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 178 SMTISRNRLTGKIPPTFANL-----------------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp EEECCSSEEEEECCGGGGGC-----------------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred EEECcCCeeeccCChHHhCC-----------------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 6666666665 445444433 5 88888888888888888888888888888888888
Q ss_pred cccCcccCCCCCCcEEEccCCccc-cccccccCCCCCCEEEcccCCCCC-CCCcCcCCCCCCEEeCCCCC-CCCCc
Q 003936 517 REVPESLGQLSSLEWLVLSDNNLQ-IIPESLNQLSSLVSLKLSNNNLER-IPERLDPLSSLKYLDLFENN-LDRIP 589 (785)
Q Consensus 517 ~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~l~~n~-l~~lp 589 (785)
+..++.+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++ +|.. ..+++|+.|++++|+ +...|
T Consensus 234 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred eeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 866555788888888888888888 478888888888888888888884 6665 778888888888887 65433
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.94 E-value=1.6e-25 Score=237.44 Aligned_cols=156 Identities=22% Similarity=0.250 Sum_probs=103.6
Q ss_pred ccCCCCCcEEEeccccCCC--cCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCC
Q 003936 406 LCMFKSLTSLEIIDCKKLE--RLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLT 483 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~ 483 (785)
+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++.+|..+. ++|+
T Consensus 141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~-------------------------~~L~ 195 (330)
T 1xku_A 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP-------------------------PSLT 195 (330)
T ss_dssp HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC-------------------------TTCS
T ss_pred hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc-------------------------ccCC
Confidence 4556666666666666532 445556666666666666666665554321 5677
Q ss_pred EEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCC
Q 003936 484 SLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNL 562 (785)
Q Consensus 484 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l 562 (785)
+|++++|.+.+..|..+..+++|+.|++++|.++.++ ..+..+++|++|++++|+++.+|..+..+++|+.|++++|++
T Consensus 196 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcC
Confidence 7777777776666667777777777777777777664 356777777777777777777777777777777777777777
Q ss_pred CCCCCc-Cc------CCCCCCEEeCCCCCCC
Q 003936 563 ERIPER-LD------PLSSLKYLDLFENNLD 586 (785)
Q Consensus 563 ~~lp~~-l~------~l~~L~~L~l~~n~l~ 586 (785)
+.+|.. +. ..+.|+.|++++|+++
T Consensus 276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~ 306 (330)
T 1xku_A 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306 (330)
T ss_dssp CCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred CccChhhcCCcccccccccccceEeecCccc
Confidence 766432 22 2356777777777765
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.93 E-value=5e-25 Score=233.66 Aligned_cols=282 Identities=16% Similarity=0.192 Sum_probs=168.1
Q ss_pred cccceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcccc-cccccCCCCCcEEe
Q 003936 19 TELRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRID 94 (785)
Q Consensus 19 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~ 94 (785)
.+|+.++++++.+ ..+|..+. +.+++|++++|.++.++. ..+++|++|++++|.++.+ |..+..+++|++|+
T Consensus 31 c~l~~l~~~~~~l---~~lp~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLGL---EKVPKDLP-PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSCC---CSCCCSCC-TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCCc---cccCccCC-CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 3566666666555 44554433 566667777776666654 5566677777777766655 55566677777777
Q ss_pred cCCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCC--cCCCcc-ccccccEEeccCCcC
Q 003936 95 LKYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLT--SLPTSI-HSKYLKRLVLRGCSN 170 (785)
Q Consensus 95 Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~--~~p~~~-~l~~L~~L~ls~~~~ 170 (785)
|++|.+. .+| .+. ++|++|++++|.+....+..++.+++|++|++++|.... ..+..+ ++++|++|++++|.
T Consensus 107 Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~- 182 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN- 182 (330)
T ss_dssp CCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-
T ss_pred CCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-
Confidence 7766644 333 232 567777777766555555556666777777776655432 334444 56666666666652
Q ss_pred CCCCCCcccccccccccccccccccc-CcchhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCc
Q 003936 171 LKNLPKMTSCHLRSTLPLLGVGIEEL-PSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSC 249 (785)
Q Consensus 171 l~~lp~~~~~~L~~~L~l~~~~i~~l-p~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n 249 (785)
++.+|.....+|+ .+++++|.+..+ |..+..+++|+.|++++|.+.+..+..+
T Consensus 183 l~~l~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------------------------- 236 (330)
T 1xku_A 183 ITTIPQGLPPSLT-ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL------------------------- 236 (330)
T ss_dssp CCSCCSSCCTTCS-EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG-------------------------
T ss_pred cccCCccccccCC-EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc-------------------------
Confidence 3444443334444 444444444433 2334444444444444444433333233
Q ss_pred ccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCcc-cc-
Q 003936 250 NIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG-LG- 327 (785)
Q Consensus 250 ~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~-l~- 327 (785)
..+++|+.|++.+|. +..+|..+..+++|++|++++|.++.++.. +.
T Consensus 237 ------------------------------~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 237 ------------------------------ANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp ------------------------------GGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred ------------------------------cCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 334555555555553 346677788888899999999998877653 32
Q ss_pred -----CccccceecccCccCCc--cccccccCCCCCCEEEeeCCC
Q 003936 328 -----QLALLSKLELKNCSELE--YISSSIFKLKSVESIEISNCS 365 (785)
Q Consensus 328 -----~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~ 365 (785)
..+.|+.|++++|+... ..|..+..+.+++.+++++|+
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 24678889999988753 456677778888888888763
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.93 E-value=4.1e-25 Score=234.42 Aligned_cols=281 Identities=13% Similarity=0.164 Sum_probs=149.6
Q ss_pred ccceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCcccc-cccccCCCCCcEEec
Q 003936 20 ELRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDL 95 (785)
Q Consensus 20 ~Lr~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~L 95 (785)
+|+.++++++.+ ..+|..+. ++|++|++++|.++.++. ..+++|++|++++|.++.+ |..+..+++|++|+|
T Consensus 34 ~l~~l~~~~~~l---~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGL---KAVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCC---SSCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCc---cccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 445555554444 33343332 345555555555544432 4445555555555555444 334455555555555
Q ss_pred CCCccccCCC-CCccccccceeccccccCccccccccccCCcccEEecCCCCCCC--cCCCcc-ccccccEEeccCCcCC
Q 003936 96 KYSKLLTKLP-DLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLT--SLPTSI-HSKYLKRLVLRGCSNL 171 (785)
Q Consensus 96 s~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~--~~p~~~-~l~~L~~L~ls~~~~l 171 (785)
++|.+. .+| .+. ++|++|++++|.+....+..++.+++|++|++++|.... ..|..+ .+ +|+
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~---------- 175 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLN---------- 175 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCS----------
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccC----------
Confidence 555433 222 222 445555555554333333334455555555555543321 222222 22 444
Q ss_pred CCCCCccccccccccccccccccccCcchhccccccceeccccccccccchhhhcccccccccccCCCCCccccCCCccc
Q 003936 172 KNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNI 251 (785)
Q Consensus 172 ~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~ 251 (785)
.+++++|.++.+|..+. ++|++|++++|.+.+..+..+..+++|+.|++++ |.+
T Consensus 176 -------------~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~-----------N~l 229 (332)
T 2ft3_A 176 -------------YLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH-----------NQI 229 (332)
T ss_dssp -------------CCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS-----------SCC
T ss_pred -------------EEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC-----------CcC
Confidence 45555555555554433 4566666666655554444444444444333333 222
Q ss_pred CCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCcc-ccC--
Q 003936 252 DGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEG-LGQ-- 328 (785)
Q Consensus 252 ~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~-l~~-- 328 (785)
.+ ..+..+..+++|+.|++.+|.. ..+|..+..+++|++|++++|.++.++.. +..
T Consensus 230 ~~--------------------~~~~~~~~l~~L~~L~L~~N~l-~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 288 (332)
T 2ft3_A 230 RM--------------------IENGSLSFLPTLRELHLDNNKL-SRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288 (332)
T ss_dssp CC--------------------CCTTGGGGCTTCCEEECCSSCC-CBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS
T ss_pred Cc--------------------CChhHhhCCCCCCEEECCCCcC-eecChhhhcCccCCEEECCCCCCCccChhHccccc
Confidence 11 1122334456666666666643 46777888899999999999999977653 332
Q ss_pred ----ccccceecccCccCC--ccccccccCCCCCCEEEeeCCC
Q 003936 329 ----LALLSKLELKNCSEL--EYISSSIFKLKSVESIEISNCS 365 (785)
Q Consensus 329 ----l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~ 365 (785)
.++|+.|++++|+.. +..|..+..+++|+.+++++|.
T Consensus 289 ~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 467899999999876 5667778889999999998875
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=1.8e-28 Score=273.32 Aligned_cols=107 Identities=27% Similarity=0.304 Sum_probs=70.2
Q ss_pred CCCCEEEeeCCcCccc----CCCccccccccceEEecCeecccc-Cc----ccCC-CCCCcEEEccCCccc-----cccc
Q 003936 480 KSLTSLEIIDCKNFMR----LPDEIGNLEYLKVLTIKGTAIREV-PE----SLGQ-LSSLEWLVLSDNNLQ-----IIPE 544 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~n~l~~l-p~----~~~~-l~~L~~L~Ls~n~l~-----~lp~ 544 (785)
++|++|++++|.+.+. ++..+..+++|++|++++|.++.. +. .+.. .++|++|++++|.++ .+|.
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 392 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH
Confidence 4666666666665543 344555667777777777776643 22 2222 568888888888887 4777
Q ss_pred cccCCCCCCEEEcccCCCCCC-----CCcC-cCCCCCCEEeCCCCCCC
Q 003936 545 SLNQLSSLVSLKLSNNNLERI-----PERL-DPLSSLKYLDLFENNLD 586 (785)
Q Consensus 545 ~l~~l~~L~~L~L~~n~l~~l-----p~~l-~~l~~L~~L~l~~n~l~ 586 (785)
.+..+++|+.|++++|+++.. ...+ ....+|+.|++.++...
T Consensus 393 ~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 393 TLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 788888888888888888742 1112 22456888888877654
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=2.9e-25 Score=234.46 Aligned_cols=225 Identities=24% Similarity=0.384 Sum_probs=147.5
Q ss_pred cccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCccc
Q 003936 307 QALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERI 386 (785)
Q Consensus 307 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~l 386 (785)
++++.|++++|.++.+|..++.+++|++|++++|.+. .+|..+..+++|++|++++|.
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~--------------------- 138 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP--------------------- 138 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC---------------------
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc---------------------
Confidence 5667777777777777777777777777777777665 666667777777777777763
Q ss_pred CccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCC---------cccchhhhccCccccccChhhhhhh
Q 003936 387 PSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGN---------LEALEELRVEGTGIREVPKSLAQLA 457 (785)
Q Consensus 387 p~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~---------l~~L~~L~L~~n~i~~lp~~~~~l~ 457 (785)
+..+|..+..+++|+.|++++|...+.+|..+.. +++|++|++++|.++.+|..+..+
T Consensus 139 ------------l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l- 205 (328)
T 4fcg_A 139 ------------LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL- 205 (328)
T ss_dssp ------------CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGC-
T ss_pred ------------cccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCC-
Confidence 3345566677777777777777777777765543 666666666666666555554444
Q ss_pred hcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecc-ccCcccCCCCCCcEEEccC
Q 003936 458 LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR-EVPESLGQLSSLEWLVLSD 536 (785)
Q Consensus 458 L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~ 536 (785)
++|++|++++|.+.+ +|..+..+++|++|++++|.+. .+|..++.+++|++|+|++
T Consensus 206 ----------------------~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~ 262 (328)
T 4fcg_A 206 ----------------------QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262 (328)
T ss_dssp ----------------------TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTT
T ss_pred ----------------------CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCC
Confidence 666666666666553 4445666666666666665443 4466666677777777777
Q ss_pred Ccccc-ccccccCCCCCCEEEcccCCCCC-CCCcCcCCCCCCEEeCCCCCCCCCc
Q 003936 537 NNLQI-IPESLNQLSSLVSLKLSNNNLER-IPERLDPLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 537 n~l~~-lp~~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~lp 589 (785)
|++.+ +|..++.+++|+.|+|++|++.+ +|+.+.++++|+.+++..+.+..++
T Consensus 263 n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l~ 317 (328)
T 4fcg_A 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLD 317 (328)
T ss_dssp CTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC--
T ss_pred CCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHHh
Confidence 65543 66667777777777777766543 6777777777777777666555444
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=2.8e-28 Score=271.67 Aligned_cols=161 Identities=24% Similarity=0.139 Sum_probs=113.7
Q ss_pred ccccCCCCCcEEEeccccCCCcC-----CcccCCcccchhhhccCccccc-----cChhhhhhhhcccccccCCCCccCC
Q 003936 404 SSLCMFKSLTSLEIIDCKKLERL-----PDELGNLEALEELRVEGTGIRE-----VPKSLAQLALSKLKLKKCSSFESLP 473 (785)
Q Consensus 404 ~~~~~l~~L~~L~l~~~~~~~~~-----p~~~~~l~~L~~L~L~~n~i~~-----lp~~~~~l~L~~L~l~~~~~~~~lp 473 (785)
..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.++. ++..+..+
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~----------------- 283 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK----------------- 283 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC-----------------
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhC-----------------
Confidence 34445566666666666543321 1222345667777777776664 44444443
Q ss_pred ccccCCCCCCEEEeeCCcCcccCCCccc-----cccccceEEecCeeccc-----cCcccCCCCCCcEEEccCCccccc-
Q 003936 474 SRLYVSKSLTSLEIIDCKNFMRLPDEIG-----NLEYLKVLTIKGTAIRE-----VPESLGQLSSLEWLVLSDNNLQII- 542 (785)
Q Consensus 474 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~l- 542 (785)
++|++|++++|.+....+..+. ..++|+.|++++|.++. ++..+..+++|++|++++|.++..
T Consensus 284 ------~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 284 ------ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAG 357 (461)
T ss_dssp ------TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHH
T ss_pred ------CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccccc
Confidence 7888888888877543333232 23699999999999884 466778889999999999998763
Q ss_pred c----ccccC-CCCCCEEEcccCCCC-----CCCCcCcCCCCCCEEeCCCCCCCC
Q 003936 543 P----ESLNQ-LSSLVSLKLSNNNLE-----RIPERLDPLSSLKYLDLFENNLDR 587 (785)
Q Consensus 543 p----~~l~~-l~~L~~L~L~~n~l~-----~lp~~l~~l~~L~~L~l~~n~l~~ 587 (785)
+ ..+.. .++|+.|++++|+++ .+|..+..+++|++|++++|+++.
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 2 33332 789999999999998 578888899999999999999874
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=9.7e-26 Score=236.68 Aligned_cols=229 Identities=23% Similarity=0.317 Sum_probs=199.0
Q ss_pred cccceeeccCcccc---cCCccccCccccceecccC-ccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCC
Q 003936 307 QALNRLIIDGTAIR---ELPEGLGQLALLSKLELKN-CSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSG 382 (785)
Q Consensus 307 ~~L~~L~L~~n~i~---~lp~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~ 382 (785)
.+++.|+++++.++ .+|..++.+++|++|++++ |.+.+.+|..+.++++|++|++++|.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~----------------- 112 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN----------------- 112 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-----------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-----------------
Confidence 46889999999988 5888899999999999995 78888888888889999999998874
Q ss_pred CcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc-ccChhhhhhhhccc
Q 003936 383 IERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR-EVPKSLAQLALSKL 461 (785)
Q Consensus 383 i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~~~~l~L~~L 461 (785)
....+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.++ .+|..+..+
T Consensus 113 ---------------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l----- 172 (313)
T 1ogq_A 113 ---------------VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF----- 172 (313)
T ss_dssp ---------------CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC-----
T ss_pred ---------------eCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhh-----
Confidence 11256677888889999999999888888888888889999999888887 677666554
Q ss_pred ccccCCCCccCCccccCCC-CCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCcc
Q 003936 462 KLKKCSSFESLPSRLYVSK-SLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNL 539 (785)
Q Consensus 462 ~l~~~~~~~~lp~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l 539 (785)
+ +|++|++++|.+.+.+|..+..+. |+.|++++|.++.. |..+..+++|+.|++++|.+
T Consensus 173 ------------------~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 173 ------------------SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp ------------------CTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred ------------------hhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 6 999999999999999999999987 99999999999854 77899999999999999999
Q ss_pred ccccccccCCCCCCEEEcccCCCC-CCCCcCcCCCCCCEEeCCCCCCC-CCccc
Q 003936 540 QIIPESLNQLSSLVSLKLSNNNLE-RIPERLDPLSSLKYLDLFENNLD-RIPEY 591 (785)
Q Consensus 540 ~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~-~lp~~ 591 (785)
+..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|+.
T Consensus 234 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred eeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 986666899999999999999998 58999999999999999999976 66654
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=6.7e-27 Score=269.26 Aligned_cols=229 Identities=15% Similarity=0.063 Sum_probs=115.7
Q ss_pred CCCCCcEEecCCCccccCCC-CCcc-cc-ccceeccccccCcc--ccccccccCCcccEEecCCCCCCCc----CCCcc-
Q 003936 86 NLVSLKRIDLKYSKLLTKLP-DLSL-AQ-NLEILDLGYCSSLT--ETHSSIQYLNKLEVLDLDRCKSLTS----LPTSI- 155 (785)
Q Consensus 86 ~l~~L~~L~Ls~n~~~~~~~-~l~~-l~-~L~~L~Ls~n~~~~--~~~~~l~~l~~L~~L~L~~~~~~~~----~p~~~- 155 (785)
.+++|++|+|++|.+....+ .+.. ++ +|++|+|++|.... .++.....+++|++|+|++|..... ++...
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 56666666666664332222 2333 22 36666666664211 1222234566666666666543222 11112
Q ss_pred ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchhccccccceeccccccccccchhhhcccccccccc
Q 003936 156 HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRI 235 (785)
Q Consensus 156 ~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 235 (785)
.+++|++|++++|..- . .....++..+.++++|++|++++|.+.+ ++..+..+++|+.|++
T Consensus 190 ~~~~L~~L~L~~n~~~-~-----------------~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l 250 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFA-K-----------------ISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCG 250 (592)
T ss_dssp HCCCCCEEECTTCCCS-S-----------------CCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEE
T ss_pred cCCCccEEEeeccCCC-c-----------------cCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcc
Confidence 4556666666554210 0 0112344456677888888888876654 5566777777777776
Q ss_pred cCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCCccccCccccceeecc
Q 003936 236 HRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLPDELGNLQALNRLIID 315 (785)
Q Consensus 236 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~ 315 (785)
+.+..... ....+..+..+++|+.|.+.++ ....+|..+..+++|++|+++
T Consensus 251 ~~~~~~~~----------------------------~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls 301 (592)
T 3ogk_B 251 GSLNEDIG----------------------------MPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLL 301 (592)
T ss_dssp CBCCCCTT----------------------------CTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEET
T ss_pred cccccccc----------------------------hHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecC
Confidence 64211100 0111222334556666666553 223455555566666666666
Q ss_pred Ccccc--cCCccccCccccceecccCccCCccccccccCCCCCCEEEee
Q 003936 316 GTAIR--ELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEIS 362 (785)
Q Consensus 316 ~n~i~--~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 362 (785)
+|.++ .++..++.+++|++|+++++-..+.++.....+++|++|+++
T Consensus 302 ~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 302 YALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE 350 (592)
T ss_dssp TCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence 66544 122224556666666666332222333333445666666666
No 51
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.8e-24 Score=228.33 Aligned_cols=235 Identities=23% Similarity=0.330 Sum_probs=198.5
Q ss_pred CCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEe
Q 003936 282 FKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEI 361 (785)
Q Consensus 282 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 361 (785)
..+++.|++.++.. ..+|..+..+++|++|++++|.++.+|..++.+++|++|++++|.+. .+|..+..+++|+.|++
T Consensus 80 ~~~l~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCC-SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCc-hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 57899999998765 48888899999999999999999999999999999999999999877 78999999999999999
Q ss_pred eCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhc
Q 003936 362 SNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRV 441 (785)
Q Consensus 362 ~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L 441 (785)
++|..+..+|.- +.. ..++..+..+++|+.|++++|.+. .+|..++.+++|++|++
T Consensus 158 ~~n~~~~~~p~~----------------~~~-------~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L 213 (328)
T 4fcg_A 158 RACPELTELPEP----------------LAS-------TDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKI 213 (328)
T ss_dssp EEETTCCCCCSC----------------SEE-------EC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEE
T ss_pred CCCCCccccChh----------------Hhh-------ccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEc
Confidence 998755554421 000 012233556999999999999876 88999999999999999
Q ss_pred cCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeec-cccC
Q 003936 442 EGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAI-REVP 520 (785)
Q Consensus 442 ~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp 520 (785)
++|.++.+|..+..+ ++|++|++++|.+.+.+|..++.+++|+.|++++|.+ +.+|
T Consensus 214 ~~N~l~~l~~~l~~l-----------------------~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p 270 (328)
T 4fcg_A 214 RNSPLSALGPAIHHL-----------------------PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270 (328)
T ss_dssp ESSCCCCCCGGGGGC-----------------------TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred cCCCCCcCchhhccC-----------------------CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence 999999988776666 8899999999999888898899999999999998655 4678
Q ss_pred cccCCCCCCcEEEccCCcccc-ccccccCCCCCCEEEcccCCCCCC
Q 003936 521 ESLGQLSSLEWLVLSDNNLQI-IPESLNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 521 ~~~~~l~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~L~~n~l~~l 565 (785)
..+..+++|++|+|++|++.+ +|..++.+++|+.+++..+.+..+
T Consensus 271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 889999999999999987664 899999999999999988766544
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=2.7e-23 Score=222.40 Aligned_cols=215 Identities=20% Similarity=0.221 Sum_probs=147.9
Q ss_pred ccccCccccceeeccCcccccCCcc-ccCccccceecccCccCCcccc-ccccCCCCCCEEEeeCCCCCCCCCCCceecc
Q 003936 301 DELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYIS-SSIFKLKSVESIEISNCSNLKGFPEIPFCNI 378 (785)
Q Consensus 301 ~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l 378 (785)
..+.++++|++|++++|.++.+|.. ++.+++|++|++++|.+.+..+ ..+..+++|+.|++++|..++.+
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~-------- 165 (353)
T 2z80_A 94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI-------- 165 (353)
T ss_dssp TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE--------
T ss_pred hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCcccccc--------
Confidence 3455666777777777777777665 6677777777777776554322 35666777777777776422211
Q ss_pred CCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhh
Q 003936 379 DGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLAL 458 (785)
Q Consensus 379 ~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L 458 (785)
.+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.++.+|..+...
T Consensus 166 -----------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-- 220 (353)
T 2z80_A 166 -----------------------QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV-- 220 (353)
T ss_dssp -----------------------CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH--
T ss_pred -----------------------CHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh--
Confidence 1234667788888888888887777888888888888888888887776544321
Q ss_pred cccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCc
Q 003936 459 SKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNN 538 (785)
Q Consensus 459 ~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~ 538 (785)
+++|+.|++++|.+.+..+..+.. ....+.++.++++++.
T Consensus 221 --------------------~~~L~~L~L~~n~l~~~~~~~l~~--------------------~~~~~~l~~l~L~~~~ 260 (353)
T 2z80_A 221 --------------------TSSVECLELRDTDLDTFHFSELST--------------------GETNSLIKKFTFRNVK 260 (353)
T ss_dssp --------------------TTTEEEEEEESCBCTTCCCC--------------------------CCCCCCEEEEESCB
T ss_pred --------------------cccccEEECCCCcccccccccccc--------------------ccccchhhcccccccc
Confidence 167777777777665543322211 1234456666666666
Q ss_pred cc-----cccccccCCCCCCEEEcccCCCCCCCCcC-cCCCCCCEEeCCCCCCCCC
Q 003936 539 LQ-----IIPESLNQLSSLVSLKLSNNNLERIPERL-DPLSSLKYLDLFENNLDRI 588 (785)
Q Consensus 539 l~-----~lp~~l~~l~~L~~L~L~~n~l~~lp~~l-~~l~~L~~L~l~~n~l~~l 588 (785)
+. .+|..+..+++|+.|++++|+++.+|..+ ..+++|++|++++|++..-
T Consensus 261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 261 ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 54 47888899999999999999999998875 8899999999999996643
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=2.9e-23 Score=217.53 Aligned_cols=233 Identities=23% Similarity=0.290 Sum_probs=143.9
Q ss_pred CCCCccccCccccceeeccCcccccCCcc-ccCccccceecccCccCCc--cccccccCCCCCCEEEeeCCCCCCCCCCC
Q 003936 297 ERLPDELGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELE--YISSSIFKLKSVESIEISNCSNLKGFPEI 373 (785)
Q Consensus 297 ~~lp~~l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~lp~l 373 (785)
+.+|..+ .++|++|++++|.++.+|.. ++.+++|++|++++|.+.. ..+..+..+++|+.|++++|.
T Consensus 20 ~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-------- 89 (306)
T 2z66_A 20 TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-------- 89 (306)
T ss_dssp SSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS--------
T ss_pred ccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc--------
Confidence 4445433 24677777777777776654 5677777777777766542 224455556666666666653
Q ss_pred ceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCC-cccCCcccchhhhccCccccccChh
Q 003936 374 PFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLP-DELGNLEALEELRVEGTGIREVPKS 452 (785)
Q Consensus 374 ~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~L~~n~i~~lp~~ 452 (785)
+..+|..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.++.++
T Consensus 90 -------------------------i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-- 142 (306)
T 2z66_A 90 -------------------------VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-- 142 (306)
T ss_dssp -------------------------EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS--
T ss_pred -------------------------cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc--
Confidence 23344445566666666666665544433 34555666666666666555332
Q ss_pred hhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcc-cCCCccccccccceEEecCeecccc-CcccCCCCCCc
Q 003936 453 LAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFM-RLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLE 530 (785)
Q Consensus 453 ~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~ 530 (785)
+..+..+++|++|++++|.+.+ ..|..+..+++|+.|++++|.++.+ |..+..+++|+
T Consensus 143 --------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 202 (306)
T 2z66_A 143 --------------------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202 (306)
T ss_dssp --------------------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred --------------------hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCC
Confidence 1222233667777777776655 4566667777777777777777666 55666777777
Q ss_pred EEEccCCccccccc-cccCCCCCCEEEcccCCCCC-CCCcCcCCC-CCCEEeCCCCCCC
Q 003936 531 WLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLER-IPERLDPLS-SLKYLDLFENNLD 586 (785)
Q Consensus 531 ~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~-lp~~l~~l~-~L~~L~l~~n~l~ 586 (785)
+|++++|.++.++. .+..+++|+.|++++|++++ .|..+..++ +|++|++++|+++
T Consensus 203 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 203 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp EEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred EEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 77777777776553 46667777777777777766 355566663 6777777777654
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=1.5e-22 Score=229.78 Aligned_cols=138 Identities=30% Similarity=0.317 Sum_probs=96.5
Q ss_pred CCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeC
Q 003936 410 KSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIID 489 (785)
Q Consensus 410 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~ 489 (785)
++|+.|++++|.+.+ +| ..+++|+.|++++|.++.+|..+ ++|+.|++++
T Consensus 161 ~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~~~--------------------------~~L~~L~L~~ 210 (622)
T 3g06_A 161 SELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPTLP--------------------------SELYKLWAYN 210 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCCCC--------------------------TTCCEEECCS
T ss_pred CCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCCcc--------------------------chhhEEECcC
Confidence 455556666655433 33 23455666666666666555321 5677777777
Q ss_pred CcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcC
Q 003936 490 CKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERL 569 (785)
Q Consensus 490 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l 569 (785)
|.+.. +|. .+++|+.|++++|.++.+| ..+++|+.|++++|+++.+|. .+++|+.|+|++|+++.+|..+
T Consensus 211 N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l 280 (622)
T 3g06_A 211 NRLTS-LPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESL 280 (622)
T ss_dssp SCCSS-CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGG
T ss_pred Ccccc-cCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHH
Confidence 76553 332 2467888888888888877 456788888888888888877 5678888888888888888888
Q ss_pred cCCCCCCEEeCCCCCCCC
Q 003936 570 DPLSSLKYLDLFENNLDR 587 (785)
Q Consensus 570 ~~l~~L~~L~l~~n~l~~ 587 (785)
..+++|+.|++++|+++.
T Consensus 281 ~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 281 IHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp GGSCTTCEEECCSCCCCH
T ss_pred hhccccCEEEecCCCCCC
Confidence 888888888888888663
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.90 E-value=9e-25 Score=229.39 Aligned_cols=245 Identities=20% Similarity=0.178 Sum_probs=159.8
Q ss_pred CCCCcEEecccCCCCCCCCccccCccccceeeccCcccc--cCCcccc-------CccccceecccCccCCccccccc--
Q 003936 282 FKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIR--ELPEGLG-------QLALLSKLELKNCSELEYISSSI-- 350 (785)
Q Consensus 282 l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~--~lp~~l~-------~l~~L~~L~l~~~~~~~~~~~~~-- 350 (785)
.++|+.|++.++.. .+|..+... |+.|++++|.++ .+|..+. .+++|++|++++|.+.+.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 44555555555555 455544333 666666666664 3444333 46666666666666666666554
Q ss_pred cCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCC-----CCCcEEEeccccCCCc
Q 003936 351 FKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMF-----KSLTSLEIIDCKKLER 425 (785)
Q Consensus 351 ~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l-----~~L~~L~l~~~~~~~~ 425 (785)
..+++|+.|++++|. +..+|..+..+ ++|++|++++|.+.+.
T Consensus 118 ~~l~~L~~L~Ls~N~---------------------------------l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~ 164 (312)
T 1wwl_A 118 ATGPDLNILNLRNVS---------------------------------WATRDAWLAELQQWLKPGLKVLSIAQAHSLNF 164 (312)
T ss_dssp CCSCCCSEEEEESCB---------------------------------CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC
T ss_pred hcCCCccEEEccCCC---------------------------------CcchhHHHHHHHHhhcCCCcEEEeeCCCCccc
Confidence 556666666666653 11223333333 6777777777776666
Q ss_pred CCcccCCcccchhhhccCccccc---cChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcc--cCC-Cc
Q 003936 426 LPDELGNLEALEELRVEGTGIRE---VPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFM--RLP-DE 499 (785)
Q Consensus 426 ~p~~~~~l~~L~~L~L~~n~i~~---lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~--~~~-~~ 499 (785)
.|..++.+++|++|++++|.+.. +|..+ .+..+++|++|++++|++.+ .++ ..
T Consensus 165 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 165 SCEQVRVFPALSTLDLSDNPELGERGLISAL---------------------CPLKFPTLQVLALRNAGMETPSGVCSAL 223 (312)
T ss_dssp CTTTCCCCSSCCEEECCSCTTCHHHHHHHHS---------------------CTTSCTTCCEEECTTSCCCCHHHHHHHH
T ss_pred hHHHhccCCCCCEEECCCCCcCcchHHHHHH---------------------HhccCCCCCEEECCCCcCcchHHHHHHH
Confidence 66667777777777777776542 12111 01334788888888888763 222 33
Q ss_pred cccccccceEEecCeeccccC--cccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCE
Q 003936 500 IGNLEYLKVLTIKGTAIREVP--ESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKY 577 (785)
Q Consensus 500 ~~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~ 577 (785)
+..+++|+.|++++|.++..+ ..+..+++|++|++++|+++.+|..+. ++|+.|++++|+++++|. +..+++|++
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~ 300 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGN 300 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEE
T ss_pred HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCE
Confidence 456788888888888888754 455667888888888888888887766 788888888888888876 888888888
Q ss_pred EeCCCCCCCC
Q 003936 578 LDLFENNLDR 587 (785)
Q Consensus 578 L~l~~n~l~~ 587 (785)
|++++|+++.
T Consensus 301 L~L~~N~l~~ 310 (312)
T 1wwl_A 301 LSLKGNPFLD 310 (312)
T ss_dssp EECTTCTTTC
T ss_pred EeccCCCCCC
Confidence 8888888763
No 56
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=9.2e-24 Score=226.07 Aligned_cols=244 Identities=20% Similarity=0.197 Sum_probs=159.9
Q ss_pred ccceeeccCcccccCCc-cccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCccc
Q 003936 308 ALNRLIIDGTAIRELPE-GLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERI 386 (785)
Q Consensus 308 ~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~l 386 (785)
+|++|++++|.++.++. .++.+++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--------------------- 111 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY--------------------- 111 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC---------------------
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc---------------------
Confidence 45555555555554444 35555555555555555444444445555555555555442
Q ss_pred CccccccCCCCCCccCCcc-ccCCCCCcEEEeccccCCCcCC-cccCCcccchhhhccCc-cccccChhhhhhhhccccc
Q 003936 387 PSSVLKLNKCSKLESLPSS-LCMFKSLTSLEIIDCKKLERLP-DELGNLEALEELRVEGT-GIREVPKSLAQLALSKLKL 463 (785)
Q Consensus 387 p~~~l~l~~~~~l~~l~~~-~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~L~~n-~i~~lp~~~~~l~L~~L~l 463 (785)
+..+|.. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++| .++.++
T Consensus 112 ------------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~------------- 166 (353)
T 2z80_A 112 ------------LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ------------- 166 (353)
T ss_dssp ------------CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-------------
T ss_pred ------------CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC-------------
Confidence 1222222 4445555555555554432222 24455555555555554 233332
Q ss_pred ccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcc-cCCCCCCcEEEccCCccccc
Q 003936 464 KKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPES-LGQLSSLEWLVLSDNNLQII 542 (785)
Q Consensus 464 ~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~l 542 (785)
+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++.+|.. +..+++|++|++++|+++.+
T Consensus 167 ---------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 167 ---------RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp ---------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTC
T ss_pred ---------HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccc
Confidence 34455569999999999999998899999999999999999999988754 34589999999999999875
Q ss_pred cc-c---ccCCCCCCEEEcccCCCCC-----CCCcCcCCCCCCEEeCCCCCCCCCcccc-ccCCCCCCcccccccceee
Q 003936 543 PE-S---LNQLSSLVSLKLSNNNLER-----IPERLDPLSSLKYLDLFENNLDRIPEYL-RSFPTSIPSEFTSLRLSVD 611 (785)
Q Consensus 543 p~-~---l~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~~lp~~~-~~~~~~ip~~l~~l~~~l~ 611 (785)
+. . ....+.++.++++++.+.. +|+.+..+++|++|++++|+++.+|+.. .. .++|+.++++-+
T Consensus 238 ~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~-----l~~L~~L~L~~N 311 (353)
T 2z80_A 238 HFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDR-----LTSLQKIWLHTN 311 (353)
T ss_dssp CCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTT-----CTTCCEEECCSS
T ss_pred cccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhc-----CCCCCEEEeeCC
Confidence 42 2 3456789999999998874 6888999999999999999999998753 21 356777444333
No 57
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=2.9e-25 Score=255.58 Aligned_cols=156 Identities=15% Similarity=0.115 Sum_probs=109.5
Q ss_pred HHHHhcccccceeeeecCCCc-cccccCCCCC------------C-CceEEEEecCCCCccc--cc-cc-c-cCceEEEc
Q 003936 12 PYTFSKMTELRLLKFCGSKNK-CMVHSLEGVP------------F-TELRYFEWHQFPLKTL--NI-LH-W-ENLVSLKM 72 (785)
Q Consensus 12 ~~~f~~l~~Lr~L~l~~~~~~-~~~~~~~~~~------------~-~~L~~L~l~~~~l~~l--p~-~~-l-~~L~~L~L 72 (785)
+..+.++++|+.|+++++..- ....+|.... . ++|++|+++++.+... .. .. + .+|++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 567889999999999886421 1112232222 2 7899999999977632 22 22 3 44999999
Q ss_pred CCCC-cc--cccccccCCCCCcEEecCCCccccCC----C-CCccccccceeccccccCc----cccccccccCCcccEE
Q 003936 73 PGSK-VT--QLWDDVQNLVSLKRIDLKYSKLLTKL----P-DLSLAQNLEILDLGYCSSL----TETHSSIQYLNKLEVL 140 (785)
Q Consensus 73 ~~~~-i~--~l~~~~~~l~~L~~L~Ls~n~~~~~~----~-~l~~l~~L~~L~Ls~n~~~----~~~~~~l~~l~~L~~L 140 (785)
+++. ++ .++.....+++|++|+|++|.+...- + -...+++|++|++++|... ..++..+..+++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 9886 22 23333457899999999999764432 1 1357889999999998865 3556667789999999
Q ss_pred ecCCCCCCCcCCCcc-ccccccEEeccCC
Q 003936 141 DLDRCKSLTSLPTSI-HSKYLKRLVLRGC 168 (785)
Q Consensus 141 ~L~~~~~~~~~p~~~-~l~~L~~L~ls~~ 168 (785)
++++|.. ..+|..+ .+++|++|+++.+
T Consensus 226 ~L~~~~~-~~l~~~~~~~~~L~~L~l~~~ 253 (592)
T 3ogk_B 226 KVGDFEI-LELVGFFKAAANLEEFCGGSL 253 (592)
T ss_dssp ECSSCBG-GGGHHHHHHCTTCCEEEECBC
T ss_pred eccCccH-HHHHHHHhhhhHHHhhccccc
Confidence 9999654 4466555 7899999999864
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=8.6e-23 Score=213.97 Aligned_cols=244 Identities=23% Similarity=0.301 Sum_probs=197.2
Q ss_pred cceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCc
Q 003936 309 LNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPS 388 (785)
Q Consensus 309 L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~ 388 (785)
-+.++.+++.++.+|..+ .++|++|++++|.+....+..+.++++|+.|++++|.. +
T Consensus 9 ~~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l-~-------------------- 65 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL-S-------------------- 65 (306)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-C--------------------
T ss_pred CCEEEcCCCCcccCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCcc-C--------------------
Confidence 357889999999999865 47999999999987754444578899999999988741 0
Q ss_pred cccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCC
Q 003936 389 SVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSS 468 (785)
Q Consensus 389 ~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~ 468 (785)
.....+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|.++.++..
T Consensus 66 ---------~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~---------------- 119 (306)
T 2z66_A 66 ---------FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEF---------------- 119 (306)
T ss_dssp ---------EEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTT----------------
T ss_pred ---------cccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccc----------------
Confidence 11122445667899999999999765 4677788999999999999999877641
Q ss_pred CccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccc--cCcccCCCCCCcEEEccCCccccc-ccc
Q 003936 469 FESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIRE--VPESLGQLSSLEWLVLSDNNLQII-PES 545 (785)
Q Consensus 469 ~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--lp~~~~~l~~L~~L~Ls~n~l~~l-p~~ 545 (785)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++. +|..+..+++|++|++++|+++++ |..
T Consensus 120 -----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 194 (306)
T 2z66_A 120 -----SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 194 (306)
T ss_dssp -----TTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred -----hhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH
Confidence 122334899999999999999999999999999999999999986 799999999999999999999986 678
Q ss_pred ccCCCCCCEEEcccCCCCCCCC-cCcCCCCCCEEeCCCCCCCCCc-cccccCCCCCCccccccccee
Q 003936 546 LNQLSSLVSLKLSNNNLERIPE-RLDPLSSLKYLDLFENNLDRIP-EYLRSFPTSIPSEFTSLRLSV 610 (785)
Q Consensus 546 l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~lp-~~~~~~~~~ip~~l~~l~~~l 610 (785)
+..+++|+.|++++|++++++. .+..+++|++|++++|+++..+ ..+. ..|++|+.++++-
T Consensus 195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~~~~~L~~L~L~~ 257 (306)
T 2z66_A 195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ----HFPSSLAFLNLTQ 257 (306)
T ss_dssp TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC----CCCTTCCEEECTT
T ss_pred hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH----hhhccCCEEEccC
Confidence 9999999999999999999755 6889999999999999987544 3332 3356788744433
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.89 E-value=6.8e-22 Score=224.47 Aligned_cols=78 Identities=31% Similarity=0.329 Sum_probs=57.1
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEccc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSN 559 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 559 (785)
++|+.|++++|.+.+ +| ..+++|+.|++++|.++.+|. .+++|+.|+|++|+++.+|..+..+++|+.|+|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCS
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecC
Confidence 456666666665544 33 344677777777777777776 56778888888888888888888888888888888
Q ss_pred CCCCC
Q 003936 560 NNLER 564 (785)
Q Consensus 560 n~l~~ 564 (785)
|.+++
T Consensus 294 N~l~~ 298 (622)
T 3g06_A 294 NPLSE 298 (622)
T ss_dssp CCCCH
T ss_pred CCCCC
Confidence 88875
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.89 E-value=3.6e-22 Score=221.21 Aligned_cols=240 Identities=23% Similarity=0.337 Sum_probs=139.2
Q ss_pred ceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCcc
Q 003936 310 NRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSS 389 (785)
Q Consensus 310 ~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~ 389 (785)
..++.++..++.+|..+. +++++|++++|.+.+..+..+.++++|+.|++++|.
T Consensus 57 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~------------------------ 110 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS------------------------ 110 (452)
T ss_dssp CEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC------------------------
T ss_pred cEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc------------------------
Confidence 344455555555554332 455555555555555555555555555555555542
Q ss_pred ccccCCCCCCcc-CCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccCh-hhhhhh-hcccccccC
Q 003936 390 VLKLNKCSKLES-LPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPK-SLAQLA-LSKLKLKKC 466 (785)
Q Consensus 390 ~l~l~~~~~l~~-l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~-L~~L~l~~~ 466 (785)
+.. .+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.+|. .+..+. |+.|++++|
T Consensus 111 ---------i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~ 181 (452)
T 3zyi_A 111 ---------IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL 181 (452)
T ss_dssp ---------CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred ---------cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCC
Confidence 111 12334455556666666655554444445556666666666666555543 222221 444444444
Q ss_pred CCCccCCc-cccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCccccc-c
Q 003936 467 SSFESLPS-RLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQII-P 543 (785)
Q Consensus 467 ~~~~~lp~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~l-p 543 (785)
+.++.++. .+..+++|++|++++|.+.+. | .+..+++|+.|++++|.++.+ |..|.++++|+.|++++|+++.+ |
T Consensus 182 ~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 259 (452)
T 3zyi_A 182 KKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259 (452)
T ss_dssp TTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECT
T ss_pred CCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECH
Confidence 44443333 344557777777777776543 3 366677777777777777766 55677777777777777777764 4
Q ss_pred ccccCCCCCCEEEcccCCCCCCCC-cCcCCCCCCEEeCCCCCCC
Q 003936 544 ESLNQLSSLVSLKLSNNNLERIPE-RLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 544 ~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~ 586 (785)
..+..+++|+.|+|++|+++.+|. .+..+++|+.|++++|++.
T Consensus 260 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 260 NAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred HHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 557777777777777777777643 3566777777777777644
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=4.6e-22 Score=219.51 Aligned_cols=239 Identities=22% Similarity=0.370 Sum_probs=120.1
Q ss_pred ceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCcc
Q 003936 310 NRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSS 389 (785)
Q Consensus 310 ~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~ 389 (785)
+.++..+..++.+|..+. ++++.|++++|.+.+..+..+.++++|+.|++++|.
T Consensus 46 ~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~------------------------ 99 (440)
T 3zyj_A 46 SKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH------------------------ 99 (440)
T ss_dssp CEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC------------------------
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc------------------------
Confidence 344444455555554332 445555555555544444455555555555555542
Q ss_pred ccccCCCCCCccC-CccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccCh-hhhhhh-hcccccccC
Q 003936 390 VLKLNKCSKLESL-PSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPK-SLAQLA-LSKLKLKKC 466 (785)
Q Consensus 390 ~l~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~-L~~L~l~~~ 466 (785)
+..+ +..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.++.+|. .+..+. |+.|++++|
T Consensus 100 ---------i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~ 170 (440)
T 3zyj_A 100 ---------IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL 170 (440)
T ss_dssp ---------CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCC
T ss_pred ---------CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCC
Confidence 1111 1234455555555555555444444445555555555555555555443 122221 222222222
Q ss_pred CCCccCCc-cccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCcccccc-
Q 003936 467 SSFESLPS-RLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIP- 543 (785)
Q Consensus 467 ~~~~~lp~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp- 543 (785)
+.+..++. .+..+++|++|++++|.+.. +| .+..+++|+.|+|++|.++.+ |..|..+++|+.|+|++|+++.++
T Consensus 171 ~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 248 (440)
T 3zyj_A 171 KRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248 (440)
T ss_dssp TTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred CCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEECh
Confidence 22222222 23334566666666665442 23 255556666666666666555 455566666666666666665543
Q ss_pred ccccCCCCCCEEEcccCCCCCCCC-cCcCCCCCCEEeCCCCCC
Q 003936 544 ESLNQLSSLVSLKLSNNNLERIPE-RLDPLSSLKYLDLFENNL 585 (785)
Q Consensus 544 ~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l 585 (785)
..|..+++|+.|+|++|+++.+|. .+..+++|+.|++++|++
T Consensus 249 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 249 NAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred hhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 345566666666666666665533 345556666666666653
No 62
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=4.9e-22 Score=205.87 Aligned_cols=219 Identities=23% Similarity=0.307 Sum_probs=155.2
Q ss_pred ceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCcc
Q 003936 310 NRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSS 389 (785)
Q Consensus 310 ~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~ 389 (785)
+.++.+++.++.+|..+ .++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~------------------------ 67 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV------------------------ 67 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC------------------------
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc------------------------
Confidence 45566666666666433 4566666666666655555556666666666666653
Q ss_pred ccccCCCCCCccC-CccccCCCCCcEEEecccc-CCCcCCcccCCcccchhhhccCccccccC-hhhhhhhhcccccccC
Q 003936 390 VLKLNKCSKLESL-PSSLCMFKSLTSLEIIDCK-KLERLPDELGNLEALEELRVEGTGIREVP-KSLAQLALSKLKLKKC 466 (785)
Q Consensus 390 ~l~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~L~~L~l~~~ 466 (785)
+..+ |..+..+++|+.|++++|. +....|..+..+++|++|++++|.++.++ ..+.
T Consensus 68 ---------l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------------ 126 (285)
T 1ozn_A 68 ---------LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR------------ 126 (285)
T ss_dssp ---------CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT------------
T ss_pred ---------cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh------------
Confidence 1111 3445566677777777776 33333566667777777777777666543 2222
Q ss_pred CCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCccccc-cc
Q 003936 467 SSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQII-PE 544 (785)
Q Consensus 467 ~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~l-p~ 544 (785)
.+++|++|++++|.+.+..+..++.+++|+.|++++|.++.+|. .+..+++|++|++++|.++.+ |.
T Consensus 127 -----------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 195 (285)
T 1ozn_A 127 -----------GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195 (285)
T ss_dssp -----------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred -----------CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh
Confidence 23778888888888776666678888889999999988888865 588899999999999999885 77
Q ss_pred cccCCCCCCEEEcccCCCCCCCC-cCcCCCCCCEEeCCCCCCC
Q 003936 545 SLNQLSSLVSLKLSNNNLERIPE-RLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 545 ~l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~ 586 (785)
.+..+++|+.|++++|+++++|. .+..+++|++|++++|++.
T Consensus 196 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 88899999999999999998764 4788999999999999854
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=3.9e-25 Score=254.70 Aligned_cols=158 Identities=15% Similarity=0.160 Sum_probs=92.0
Q ss_pred ccccCceEEEcCCCC-cccc---c------------ccccCCCCCcEEecCCCccccCCC-CCc-cccccceeccccccC
Q 003936 62 LHWENLVSLKMPGSK-VTQL---W------------DDVQNLVSLKRIDLKYSKLLTKLP-DLS-LAQNLEILDLGYCSS 123 (785)
Q Consensus 62 ~~l~~L~~L~L~~~~-i~~l---~------------~~~~~l~~L~~L~Ls~n~~~~~~~-~l~-~l~~L~~L~Ls~n~~ 123 (785)
..+++|++|+++++. +..+ | .-...+++|++|+|++|.+....+ .+. .+++|++|++++|..
T Consensus 63 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~ 142 (594)
T 2p1m_B 63 RRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG 142 (594)
T ss_dssp HHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE
T ss_pred hhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC
Confidence 556778888887764 2111 1 112456777888887776433322 233 567778888877743
Q ss_pred ccc--cccccccCCcccEEecCCCCCCCc----CCCcc-ccccccEEeccCCcCCCCCCCcccccccccccccccccccc
Q 003936 124 LTE--THSSIQYLNKLEVLDLDRCKSLTS----LPTSI-HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEEL 196 (785)
Q Consensus 124 ~~~--~~~~l~~l~~L~~L~L~~~~~~~~----~p~~~-~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~l 196 (785)
.+. ++..+..+++|++|++++|..... ++... .+++|++|++++|. ..+. ...+
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~-----------------~~~l 203 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVS-----------------FSAL 203 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCC-----------------HHHH
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCC-----------------HHHH
Confidence 332 444455777777887777653222 22222 45677777777663 1110 0122
Q ss_pred CcchhccccccceeccccccccccchhhhcccccccccccCC
Q 003936 197 PSSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIHRC 238 (785)
Q Consensus 197 p~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 238 (785)
+..+..+++|++|++++|...+.++..+..+++|+.|++..+
T Consensus 204 ~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 204 ERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred HHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 223345688888888888555556777777777777776654
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=3e-23 Score=217.78 Aligned_cols=203 Identities=20% Similarity=0.245 Sum_probs=143.5
Q ss_pred ccccceeeccCcccc-cCCccc--cCccccceecccCccCCccccccccCC-----CCCCEEEeeCCCCCCCCCCCceec
Q 003936 306 LQALNRLIIDGTAIR-ELPEGL--GQLALLSKLELKNCSELEYISSSIFKL-----KSVESIEISNCSNLKGFPEIPFCN 377 (785)
Q Consensus 306 l~~L~~L~L~~n~i~-~lp~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~l~~lp~l~~l~ 377 (785)
+++|++|++++|.++ .+|..+ +.+++|++|++++|.+.+. |..+..+ ++|++|++++|.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~------------ 160 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAH------------ 160 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCS------------
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCC------------
Confidence 445555556555555 344443 5566666666666555544 4444444 666666666664
Q ss_pred cCCCCCcccCccccccCCCCCCccC-CccccCCCCCcEEEeccccCCCc--CCccc--CCcccchhhhccCccccccChh
Q 003936 378 IDGSGIERIPSSVLKLNKCSKLESL-PSSLCMFKSLTSLEIIDCKKLER--LPDEL--GNLEALEELRVEGTGIREVPKS 452 (785)
Q Consensus 378 l~~~~i~~lp~~~l~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~--~p~~~--~~l~~L~~L~L~~n~i~~lp~~ 452 (785)
+..+ |..++.+++|+.|++++|.+.+. .+..+ ..+++|++|++++|.++.++..
T Consensus 161 ---------------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 219 (312)
T 1wwl_A 161 ---------------------SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219 (312)
T ss_dssp ---------------------CCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHH
T ss_pred ---------------------CccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHH
Confidence 1122 24566777788888887776554 23333 7788888888888888755432
Q ss_pred hhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCC-CccccccccceEEecCeeccccCcccCCCCCCcE
Q 003936 453 LAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLP-DEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEW 531 (785)
Q Consensus 453 ~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~ 531 (785)
...+ +..+++|++|++++|.+.+..| ..+..+++|+.|++++|.++.+|..+. ++|++
T Consensus 220 ~~~~-------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 220 CSAL-------------------AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSV 278 (312)
T ss_dssp HHHH-------------------HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEE
T ss_pred HHHH-------------------HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceE
Confidence 2111 1123899999999999888775 456778999999999999999998776 89999
Q ss_pred EEccCCccccccccccCCCCCCEEEcccCCCCC
Q 003936 532 LVLSDNNLQIIPESLNQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 532 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~ 564 (785)
|++++|+++++|. +..+++|+.|++++|++++
T Consensus 279 L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 279 LDLSYNRLDRNPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EECCSSCCCSCCC-TTTSCEEEEEECTTCTTTC
T ss_pred EECCCCCCCCChh-HhhCCCCCEEeccCCCCCC
Confidence 9999999999987 9999999999999999875
No 65
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=7.4e-22 Score=218.69 Aligned_cols=112 Identities=21% Similarity=0.168 Sum_probs=68.4
Q ss_pred ccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCC
Q 003936 303 LGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSG 382 (785)
Q Consensus 303 l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~ 382 (785)
+.++++|++|++++|.++.+|. +..+++|++|++++|.+.+..|..+.++++|+.|++++|..
T Consensus 192 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l---------------- 254 (452)
T 3zyi_A 192 FEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV---------------- 254 (452)
T ss_dssp TTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC----------------
T ss_pred ccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC----------------
Confidence 3445555666666666665543 55566666666666666666666666666666666666530
Q ss_pred CcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc
Q 003936 383 IERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR 447 (785)
Q Consensus 383 i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~ 447 (785)
-...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 255 ----------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 255 ----------------SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ----------------CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ----------------ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 0112334556677777777777666555566677777777777777665
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=3.2e-24 Score=225.75 Aligned_cols=218 Identities=16% Similarity=0.164 Sum_probs=120.8
Q ss_pred ccCccccceeeccCcccccCC-ccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCC
Q 003936 303 LGNLQALNRLIIDGTAIRELP-EGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGS 381 (785)
Q Consensus 303 l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~ 381 (785)
+..+++|++|++++|.++.++ ..++.+++|++|++++|.+.+..+ +..+++|++|++++|.
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~---------------- 91 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY---------------- 91 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE----------------
T ss_pred hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc----------------
Confidence 344556777777777776655 346667777777777766655443 6666666676666663
Q ss_pred CCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccCh-hhhhhhhcc
Q 003936 382 GIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPK-SLAQLALSK 460 (785)
Q Consensus 382 ~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~-~~~~l~L~~ 460 (785)
+..+ ...++|+.|++++|.+.+..+. .+++|++|++++|.++.++. .+..+
T Consensus 92 -----------------l~~l----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l---- 143 (317)
T 3o53_A 92 -----------------VQEL----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCR---- 143 (317)
T ss_dssp -----------------EEEE----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGG----
T ss_pred -----------------cccc----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhcc----
Confidence 1111 1224555555555554443322 23445555555555554432 22222
Q ss_pred cccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCcc-ccccccceEEecCeeccccCcccCCCCCCcEEEccCCcc
Q 003936 461 LKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEI-GNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNL 539 (785)
Q Consensus 461 L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l 539 (785)
++|++|++++|.+.+..+..+ ..+++|++|++++|.++.+|. ...+++|++|++++|++
T Consensus 144 -------------------~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 144 -------------------SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp -------------------SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCC
T ss_pred -------------------CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCCCcC
Confidence 455555555555554444433 245556666666666555543 22356666666666666
Q ss_pred ccccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 540 QIIPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 540 ~~lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
+.+|..+..+++|+.|++++|+++.+|..+..+++|+.|++++|++.
T Consensus 204 ~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 204 AFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 66655566666666666666666666665666666666666666654
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=8e-22 Score=217.61 Aligned_cols=225 Identities=22% Similarity=0.279 Sum_probs=169.3
Q ss_pred CCCcEEecccCCCCCCCCccccCccccceeeccCcccccCC-ccccCccccceecccCccCCccccccccCCCCCCEEEe
Q 003936 283 KSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELP-EGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEI 361 (785)
Q Consensus 283 ~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 361 (785)
++++.|++.+|......+..|.++++|++|+|++|.++.++ ..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56666776666655555566667777777777777776555 34666777777777776655554555666666666666
Q ss_pred eCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCc-ccCCcccchhhh
Q 003936 362 SNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPD-ELGNLEALEELR 440 (785)
Q Consensus 362 ~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~ 440 (785)
++|. +..++ +..+..+++|+.|++++|...+.++. .|..+++|++|+
T Consensus 144 ~~N~-----------------i~~~~---------------~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 144 RNNP-----------------IESIP---------------SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp CSCC-----------------CCEEC---------------TTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred CCCc-----------------ccccC---------------HHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 6653 22111 12466778888888888766666554 577888888888
Q ss_pred ccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-
Q 003936 441 VEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV- 519 (785)
Q Consensus 441 L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l- 519 (785)
+++|.++.+|. +..+++|+.|++++|.+.+..|..+.++++|+.|++++|.++.+
T Consensus 192 L~~n~l~~~~~------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 247 (440)
T 3zyj_A 192 LAMCNLREIPN------------------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247 (440)
T ss_dssp CTTSCCSSCCC------------------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCCcCccccc------------------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC
Confidence 88888887763 22348999999999999998899999999999999999999988
Q ss_pred CcccCCCCCCcEEEccCCccccccc-cccCCCCCCEEEcccCCCC
Q 003936 520 PESLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLE 563 (785)
Q Consensus 520 p~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~ 563 (785)
+..|..+++|++|+|++|+++.+|. .+..+++|+.|+|++|.+.
T Consensus 248 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 248 RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred hhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 5678999999999999999999875 4788999999999999875
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=2e-22 Score=208.75 Aligned_cols=213 Identities=22% Similarity=0.299 Sum_probs=179.5
Q ss_pred CCCCCccccCccccceeeccCcccccCCc-cccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCc
Q 003936 296 FERLPDELGNLQALNRLIIDGTAIRELPE-GLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIP 374 (785)
Q Consensus 296 ~~~lp~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~ 374 (785)
+..+|..+ .++|++|++++|.++.++. .++.+++|++|++++|.+.+..+..+..+++|++|++++|..++.+
T Consensus 23 l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~---- 96 (285)
T 1ozn_A 23 LQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV---- 96 (285)
T ss_dssp CSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC----
T ss_pred cccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcccc----
Confidence 34556533 4689999999999998775 5889999999999999888877888999999999999998633322
Q ss_pred eeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChh-h
Q 003936 375 FCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKS-L 453 (785)
Q Consensus 375 ~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~-~ 453 (785)
.|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.++.++.. +
T Consensus 97 ---------------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 149 (285)
T 1ozn_A 97 ---------------------------DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF 149 (285)
T ss_dssp ---------------------------CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ---------------------------CHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh
Confidence 145577889999999999998888888899999999999999999877643 3
Q ss_pred hhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEE
Q 003936 454 AQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWL 532 (785)
Q Consensus 454 ~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L 532 (785)
.. +++|++|++++|.+.+..+..+..+++|+.|++++|.++.+ |..+..+++|++|
T Consensus 150 ~~-----------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 206 (285)
T 1ozn_A 150 RD-----------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206 (285)
T ss_dssp TT-----------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred cc-----------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEe
Confidence 33 38999999999998877777789999999999999999977 7889999999999
Q ss_pred EccCCccccccc-cccCCCCCCEEEcccCCCCC
Q 003936 533 VLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 533 ~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~ 564 (785)
++++|+++.+|. .+..+++|+.|++++|.+..
T Consensus 207 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred eCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 999999999874 58999999999999998874
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.88 E-value=4.3e-23 Score=217.08 Aligned_cols=231 Identities=17% Similarity=0.164 Sum_probs=182.4
Q ss_pred ccceeeccCcccccCCcc-ccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCccc
Q 003936 308 ALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERI 386 (785)
Q Consensus 308 ~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~l 386 (785)
+++..+++.+.+...+.. +..+++|++|++++|.+.+..|..+..+++|+.|++++|.
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--------------------- 69 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--------------------- 69 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC---------------------
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc---------------------
Confidence 356667777766644433 4567789999999998888777888888888888888874
Q ss_pred CccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccC
Q 003936 387 PSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKC 466 (785)
Q Consensus 387 p~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~ 466 (785)
+...+. +..+++|+.|++++|.+.+. ...++|++|++++|.++.++..
T Consensus 70 ------------l~~~~~-~~~l~~L~~L~Ls~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~-------------- 117 (317)
T 3o53_A 70 ------------LYETLD-LESLSTLRTLDLNNNYVQEL-----LVGPSIETLHAANNNISRVSCS-------------- 117 (317)
T ss_dssp ------------CEEEEE-ETTCTTCCEEECCSSEEEEE-----EECTTCCEEECCSSCCSEEEEC--------------
T ss_pred ------------CCcchh-hhhcCCCCEEECcCCccccc-----cCCCCcCEEECCCCccCCcCcc--------------
Confidence 222222 66788888888888875432 2337788888888887765532
Q ss_pred CCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-Cccc-CCCCCCcEEEccCCccccccc
Q 003936 467 SSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESL-GQLSSLEWLVLSDNNLQIIPE 544 (785)
Q Consensus 467 ~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~-~~l~~L~~L~Ls~n~l~~lp~ 544 (785)
.+++|++|++++|++.+..+..+..+++|+.|++++|.++.+ +..+ ..+++|++|++++|.++.+|.
T Consensus 118 -----------~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 186 (317)
T 3o53_A 118 -----------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (317)
T ss_dssp -----------CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred -----------ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc
Confidence 127899999999999988888899999999999999999987 4444 478999999999999999864
Q ss_pred cccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCCCCccccccCCCCCCcccccccc
Q 003936 545 SLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRL 608 (785)
Q Consensus 545 ~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~lp~~~~~~~~~ip~~l~~l~~ 608 (785)
. ..+++|+.|++++|+++++|..+..+++|+.|++++|+++.+|+.+.. .++|+.+++
T Consensus 187 ~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-----l~~L~~L~l 244 (317)
T 3o53_A 187 Q-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF-----SQNLEHFDL 244 (317)
T ss_dssp C-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCC-----CTTCCEEEC
T ss_pred c-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhc-----CCCCCEEEc
Confidence 4 359999999999999999988899999999999999999999876432 456777443
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=1.8e-24 Score=249.09 Aligned_cols=84 Identities=17% Similarity=0.220 Sum_probs=51.3
Q ss_pred ccccccceEEecCeeccc-cCcccCC-CCCCcEEEccCCcccc--ccccccCCCCCCEEEcccCCCCC--CCCcCcCCCC
Q 003936 501 GNLEYLKVLTIKGTAIRE-VPESLGQ-LSSLEWLVLSDNNLQI--IPESLNQLSSLVSLKLSNNNLER--IPERLDPLSS 574 (785)
Q Consensus 501 ~~l~~L~~L~L~~n~l~~-lp~~~~~-l~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~L~~n~l~~--lp~~l~~l~~ 574 (785)
..+++|+.|++++ .++. .+..+.. +++|+.|+|++|.++. ++.....+++|+.|+|++|.++. ++..+..+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3455666666655 3321 1222332 6778888888877754 22222557788888888887754 2334455778
Q ss_pred CCEEeCCCCCC
Q 003936 575 LKYLDLFENNL 585 (785)
Q Consensus 575 L~~L~l~~n~l 585 (785)
|++|++++|++
T Consensus 508 L~~L~l~~~~~ 518 (594)
T 2p1m_B 508 MRSLWMSSCSV 518 (594)
T ss_dssp SSEEEEESSCC
T ss_pred CCEEeeeCCCC
Confidence 88888888876
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=3e-22 Score=222.99 Aligned_cols=221 Identities=16% Similarity=0.175 Sum_probs=165.5
Q ss_pred CccccceeeccCcccccCC-ccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCC
Q 003936 305 NLQALNRLIIDGTAIRELP-EGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGI 383 (785)
Q Consensus 305 ~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i 383 (785)
.+++|++|++++|.++.++ ..++.+++|++|++++|.+.+..| +..+++|+.|++++|.
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~------------------ 91 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY------------------ 91 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE------------------
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc------------------
Confidence 3456777777777777665 357777777777777777665544 6667777777777663
Q ss_pred cccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccC-hhhhhhhhcccc
Q 003936 384 ERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVP-KSLAQLALSKLK 462 (785)
Q Consensus 384 ~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~L~~L~ 462 (785)
+..+| ..++|+.|++++|.+.+..+. .+++|+.|++++|.++.++ ..+..+
T Consensus 92 ---------------l~~l~----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l------ 143 (487)
T 3oja_A 92 ---------------VQELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCR------ 143 (487)
T ss_dssp ---------------EEEEE----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGG------
T ss_pred ---------------CCCCC----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCC------
Confidence 11111 226777777777776654443 3456777777777776543 233333
Q ss_pred cccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccc-cccccceEEecCeeccccCcccCCCCCCcEEEccCCcccc
Q 003936 463 LKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIG-NLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQI 541 (785)
Q Consensus 463 l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~ 541 (785)
++|+.|++++|.+.+..|..+. .+++|+.|+|++|.++.+|. ...+++|+.|+|++|.+++
T Consensus 144 -----------------~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 144 -----------------SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp -----------------SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCE
T ss_pred -----------------CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCC
Confidence 7888888888888887777765 78899999999999988865 4469999999999999999
Q ss_pred ccccccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC--CCccc
Q 003936 542 IPESLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD--RIPEY 591 (785)
Q Consensus 542 lp~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~--~lp~~ 591 (785)
+|..+..+++|+.|++++|.++++|..+..+++|+.|++++|++. .+|..
T Consensus 206 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 206 MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 988899999999999999999999999999999999999999976 55544
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.6e-22 Score=225.17 Aligned_cols=235 Identities=16% Similarity=0.167 Sum_probs=198.5
Q ss_pred CCCCCcEEecccCCCCCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEE
Q 003936 281 MFKSLTSLEIIDCPNFERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIE 360 (785)
Q Consensus 281 ~l~~L~~L~l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 360 (785)
.+++|+.|++.+|...+..|..+..+++|++|+|++|.++..++ ++.+++|++|++++|.+.+.. ..++|+.|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 45689999999998777777889999999999999999997666 899999999999999765432 237888888
Q ss_pred eeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhh
Q 003936 361 ISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELR 440 (785)
Q Consensus 361 l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 440 (785)
+++|. +..++. ..+++|+.|++++|.+.+..|..++.+++|+.|+
T Consensus 106 L~~N~---------------------------------l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 150 (487)
T 3oja_A 106 AANNN---------------------------------ISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (487)
T ss_dssp CCSSC---------------------------------CCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE
T ss_pred CcCCc---------------------------------CCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE
Confidence 88874 112222 2468899999999999998888999999999999
Q ss_pred ccCcccccc-Chhhh-hhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccc
Q 003936 441 VEGTGIREV-PKSLA-QLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIRE 518 (785)
Q Consensus 441 L~~n~i~~l-p~~~~-~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 518 (785)
+++|.++.+ |..+. .+ ++|+.|++++|.+.+..+ ...+++|+.|+|++|.++.
T Consensus 151 Ls~N~l~~~~~~~l~~~l-----------------------~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~ 205 (487)
T 3oja_A 151 LKLNEIDTVNFAELAASS-----------------------DTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF 205 (487)
T ss_dssp CTTSCCCEEEGGGGGGGT-----------------------TTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE
T ss_pred CCCCCCCCcChHHHhhhC-----------------------CcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC
Confidence 999999864 44433 33 899999999999877633 3358999999999999999
Q ss_pred cCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCC--CCCCcCcCCCCCCEEeCC
Q 003936 519 VPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLE--RIPERLDPLSSLKYLDLF 581 (785)
Q Consensus 519 lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~l~ 581 (785)
+|+.+..+++|+.|+|++|.++.+|..+..+++|+.|++++|.+. .+|.++..++.|+.++++
T Consensus 206 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 206 MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 998899999999999999999999999999999999999999998 578888888888887775
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=8.2e-21 Score=195.61 Aligned_cols=159 Identities=23% Similarity=0.262 Sum_probs=114.7
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.++.. .+..+++|++|
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L 129 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF----------------------PIGHLKTLKEL 129 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTC----------------------CCTTCTTCCEE
T ss_pred ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCch----------------------hcccCCCCCEE
Confidence 44556666666666665555555566666666666666666554431 12223777777
Q ss_pred EeeCCcCcc-cCCCccccccccceEEecCeeccccC-cccCCCCCCc----EEEccCCccccccccccCCCCCCEEEccc
Q 003936 486 EIIDCKNFM-RLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLE----WLVLSDNNLQIIPESLNQLSSLVSLKLSN 559 (785)
Q Consensus 486 ~l~~~~~~~-~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~----~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 559 (785)
++++|.+.+ .+|..+..+++|+.|++++|.++.++ ..+..+++|+ +|++++|.++.++.......+|+.|++++
T Consensus 130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~ 209 (276)
T 2z62_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 209 (276)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCS
T ss_pred ECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCC
Confidence 777777765 35777788888888888888888774 4566666666 89999999998887766667899999999
Q ss_pred CCCCCCCCc-CcCCCCCCEEeCCCCCCC
Q 003936 560 NNLERIPER-LDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 560 n~l~~lp~~-l~~l~~L~~L~l~~n~l~ 586 (785)
|+++.+|.. +..+++|+.|++++|+++
T Consensus 210 n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 210 NQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CceeecCHhHhcccccccEEEccCCccc
Confidence 999998665 588999999999999865
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=1.5e-20 Score=194.42 Aligned_cols=201 Identities=21% Similarity=0.265 Sum_probs=147.4
Q ss_pred ccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCC
Q 003936 303 LGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSG 382 (785)
Q Consensus 303 l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~ 382 (785)
+.+++++++++++++.++.+|..+. ++++.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~----------------- 66 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE----------------- 66 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-----------------
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-----------------
Confidence 5677889999999999998887653 688889999888777666667777777777776653
Q ss_pred CcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccc
Q 003936 383 IERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLK 462 (785)
Q Consensus 383 i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~ 462 (785)
+..++.. ..+++|+.|+ +++|.++.+|..+..+
T Consensus 67 ----------------l~~~~~~-~~l~~L~~L~------------------------Ls~N~l~~l~~~~~~l------ 99 (290)
T 1p9a_G 67 ----------------LTKLQVD-GTLPVLGTLD------------------------LSHNQLQSLPLLGQTL------ 99 (290)
T ss_dssp ----------------CCEEECC-SCCTTCCEEE------------------------CCSSCCSSCCCCTTTC------
T ss_pred ----------------cCcccCC-CCCCcCCEEE------------------------CCCCcCCcCchhhccC------
Confidence 1111111 2344444444 4444444444333222
Q ss_pred cccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCcccc
Q 003936 463 LKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQI 541 (785)
Q Consensus 463 l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~ 541 (785)
++|++|++++|++.+..+..+.++++|+.|++++|.++.+|. .+..+++|+.|+|++|+++.
T Consensus 100 -----------------~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 162 (290)
T 1p9a_G 100 -----------------PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (290)
T ss_dssp -----------------TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred -----------------CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc
Confidence 677777777777766666777888888888888888888754 46788899999999999988
Q ss_pred cccc-ccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 542 IPES-LNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 542 lp~~-l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
+|.. +..+++|+.|+|++|+++.+|..+....+|+.|++++|++.
T Consensus 163 l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 163 LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 8765 57899999999999999999988888889999999998753
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.1e-20 Score=188.01 Aligned_cols=153 Identities=22% Similarity=0.224 Sum_probs=100.2
Q ss_pred ccCCCCCcEEEecc-ccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCC-
Q 003936 406 LCMFKSLTSLEIID-CKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLT- 483 (785)
Q Consensus 406 ~~~l~~L~~L~l~~-~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~- 483 (785)
+..+++|+.|++++ |.+.+..+..|..+++|++|++++|.++.+|. +..+ ++|+
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l-----------------------~~L~~ 131 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKV-----------------------YSTDI 131 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTC-----------------------CBCCS
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccc-----------------------ccccc
Confidence 44555555555555 44443333455555666666666665555553 2222 4444
Q ss_pred --EEEeeCC-cCcccCCCccccccccc-eEEecCeeccccCcccCCCCCCcEEEccCCc-ccccc-ccccCC-CCCCEEE
Q 003936 484 --SLEIIDC-KNFMRLPDEIGNLEYLK-VLTIKGTAIREVPESLGQLSSLEWLVLSDNN-LQIIP-ESLNQL-SSLVSLK 556 (785)
Q Consensus 484 --~L~l~~~-~~~~~~~~~~~~l~~L~-~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp-~~l~~l-~~L~~L~ 556 (785)
+|++++| .+.+..+..+.++++|+ .|++++|.++.+|......++|++|++++|. ++.+| ..+..+ ++|+.|+
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 7777777 55555555677788888 8888888888776544444778888888884 87775 457777 8888888
Q ss_pred cccCCCCCCCCcCcCCCCCCEEeCCCCC
Q 003936 557 LSNNNLERIPERLDPLSSLKYLDLFENN 584 (785)
Q Consensus 557 L~~n~l~~lp~~l~~l~~L~~L~l~~n~ 584 (785)
+++|+++.+|.. .+++|+.|+++++.
T Consensus 212 l~~N~l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 212 VSQTSVTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCccccCChh--HhccCceeeccCcc
Confidence 888888887765 67788888887764
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=2.2e-20 Score=192.39 Aligned_cols=210 Identities=20% Similarity=0.268 Sum_probs=165.0
Q ss_pred CCCCccccCccccceeeccCcccccCCc-cccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCce
Q 003936 297 ERLPDELGNLQALNRLIIDGTAIRELPE-GLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPF 375 (785)
Q Consensus 297 ~~lp~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~ 375 (785)
..+|..+. ++|++|++++|.++.++. .++.+++|++|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~---------- 87 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP---------- 87 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC----------
T ss_pred cccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc----------
Confidence 34555442 468888888888887765 57788888888888887776666677778888888887774
Q ss_pred eccCCCCCcccCccccccCCCCCCccC-CccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccc--cChh
Q 003936 376 CNIDGSGIERIPSSVLKLNKCSKLESL-PSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIRE--VPKS 452 (785)
Q Consensus 376 l~l~~~~i~~lp~~~l~l~~~~~l~~l-~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~--lp~~ 452 (785)
+..+ +..+..+++|+.|++++|.+.+..+..++.+++|++|++++|.++. +|..
T Consensus 88 -----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~ 144 (276)
T 2z62_A 88 -----------------------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144 (276)
T ss_dssp -----------------------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred -----------------------cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh
Confidence 1222 2456778888888888888777666678888888888888888875 4555
Q ss_pred hhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccc----eEEecCeeccccCcccCCCCC
Q 003936 453 LAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLK----VLTIKGTAIREVPESLGQLSS 528 (785)
Q Consensus 453 ~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~----~L~L~~n~l~~lp~~~~~l~~ 528 (785)
+..+ ++|++|++++|++.+..+..+..+.+|+ .|++++|.++.++.......+
T Consensus 145 ~~~l-----------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~ 201 (276)
T 2z62_A 145 FSNL-----------------------TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201 (276)
T ss_dssp GGGC-----------------------TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCC
T ss_pred hccC-----------------------CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCc
Confidence 5554 8899999999988877777777777777 899999999999776666779
Q ss_pred CcEEEccCCcccccccc-ccCCCCCCEEEcccCCCCC
Q 003936 529 LEWLVLSDNNLQIIPES-LNQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 529 L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~ 564 (785)
|++|++++|+++.+|.. +..+++|+.|++++|.++.
T Consensus 202 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 202 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp EEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred ccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 99999999999998865 6889999999999998874
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.83 E-value=2.6e-19 Score=183.61 Aligned_cols=199 Identities=26% Similarity=0.361 Sum_probs=138.8
Q ss_pred ccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccC
Q 003936 308 ALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIP 387 (785)
Q Consensus 308 ~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp 387 (785)
..+.++++++.++.+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n----------------------- 71 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN----------------------- 71 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-----------------------
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-----------------------
Confidence 46778888888888876543 56777777777655444444444555555555444
Q ss_pred ccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCC
Q 003936 388 SSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCS 467 (785)
Q Consensus 388 ~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~ 467 (785)
.+.+..+..|..+++|++|++++|.++.+|...
T Consensus 72 ---------------------------------~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------- 104 (270)
T 2o6q_A 72 ---------------------------------KLQTLPAGIFKELKNLETLWVTDNKLQALPIGV-------------- 104 (270)
T ss_dssp ---------------------------------CCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTT--------------
T ss_pred ---------------------------------ccCeeChhhhcCCCCCCEEECCCCcCCcCCHhH--------------
Confidence 333333333444555555555555555444221
Q ss_pred CCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCccccccc-c
Q 003936 468 SFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPE-S 545 (785)
Q Consensus 468 ~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~-~ 545 (785)
+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|. .+..+++|++|++++|.++.+|. .
T Consensus 105 --------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 176 (270)
T 2o6q_A 105 --------FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176 (270)
T ss_dssp --------TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred --------cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhH
Confidence 1122667777777777766666777888888888888888888865 47889999999999999998775 4
Q ss_pred ccCCCCCCEEEcccCCCCCCCC-cCcCCCCCCEEeCCCCCCC
Q 003936 546 LNQLSSLVSLKLSNNNLERIPE-RLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 546 l~~l~~L~~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~ 586 (785)
+..+++|+.|++++|+++.+|. .+..+++|+.|++++|++.
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 8889999999999999998865 4788999999999999854
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.82 E-value=1.5e-19 Score=187.04 Aligned_cols=185 Identities=25% Similarity=0.284 Sum_probs=155.2
Q ss_pred ccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCC
Q 003936 400 ESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVS 479 (785)
Q Consensus 400 ~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~ 479 (785)
..+|..+. ++++.|++++|.+.+..+..+..+++|+.|++++|.++.++.. . .+
T Consensus 23 ~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~-----------------------~l 76 (290)
T 1p9a_G 23 TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-G-----------------------TL 76 (290)
T ss_dssp SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-S-----------------------CC
T ss_pred CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-C-----------------------CC
Confidence 34444432 6899999999998888888899999999999999999877643 2 23
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L 557 (785)
++|++|++++|.+. .+|..+..+++|+.|++++|.++.+| ..|..+++|++|+|++|+++.+|.. +..+++|+.|+|
T Consensus 77 ~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 77 PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155 (290)
T ss_dssp TTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEEC
Confidence 89999999999876 67888899999999999999999996 6799999999999999999998754 789999999999
Q ss_pred ccCCCCCCCCc-CcCCCCCCEEeCCCCCCCCCccccccCCCCCCcccccccceeeecccc
Q 003936 558 SNNNLERIPER-LDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNCL 616 (785)
Q Consensus 558 ~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~lp~~~~~~~~~ip~~l~~l~~~l~~~~C~ 616 (785)
++|+++++|.. +..+++|+.|++++|+++.+|+.+.. ...++.+.+.-+...|.
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~-----~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG-----SHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-----TCCCSEEECCSCCBCCS
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcc-----cccCCeEEeCCCCccCc
Confidence 99999999765 57899999999999999999977443 23677766555666664
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=3.3e-20 Score=193.95 Aligned_cols=155 Identities=24% Similarity=0.333 Sum_probs=114.4
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|.++.++. +.. +++|++|
T Consensus 81 ~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~-----------------------l~~L~~L 134 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITDVTP-LAG-----------------------LSNLQVL 134 (308)
T ss_dssp GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCCCGG-GTT-----------------------CTTCCEE
T ss_pred HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCCchh-hcC-----------------------CCCCCEE
Confidence 4455566666666665433 22 45566666666666666665543 222 2777777
Q ss_pred EeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCC
Q 003936 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 486 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l 565 (785)
++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++. +..+++|+.|++++|+++.+
T Consensus 135 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBC
T ss_pred ECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcc
Confidence 777777655433 7778888888888888888776 8889999999999999988775 78899999999999999988
Q ss_pred CCcCcCCCCCCEEeCCCCCCCCCccc
Q 003936 566 PERLDPLSSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 566 p~~l~~l~~L~~L~l~~n~l~~lp~~ 591 (785)
++ +..+++|+.|++++|+++..|..
T Consensus 211 ~~-l~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 211 SP-LANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp GG-GTTCTTCCEEEEEEEEEECCCEE
T ss_pred cc-ccCCCCCCEEEccCCeeecCCee
Confidence 74 88899999999999998877654
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=2e-19 Score=188.02 Aligned_cols=200 Identities=23% Similarity=0.335 Sum_probs=157.6
Q ss_pred ccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCC
Q 003936 303 LGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSG 382 (785)
Q Consensus 303 l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~ 382 (785)
...+++|++|+++++.++.++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~----------------- 96 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNP----------------- 96 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCC-----------------
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCc-----------------
Confidence 345677888888888887776 47778888888888876655433 7777888888887774
Q ss_pred CcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccc
Q 003936 383 IERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLK 462 (785)
Q Consensus 383 i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~ 462 (785)
+..++ .+..+++|+.|++++|.+.+ ++. +..+++|++|++++|.++.++. +..+
T Consensus 97 ----------------l~~~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l------ 150 (308)
T 1h6u_A 97 ----------------LKNVS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISP-LAGL------ 150 (308)
T ss_dssp ----------------CSCCG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG-GGGC------
T ss_pred ----------------CCCch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCcc-ccCC------
Confidence 12222 46678888999999888665 333 8888999999999998887765 3333
Q ss_pred cccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccc
Q 003936 463 LKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQII 542 (785)
Q Consensus 463 l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l 542 (785)
++|+.|++++|.+.+..+ +..+++|+.|++++|.++.++. +..+++|++|++++|.++.+
T Consensus 151 -----------------~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~ 210 (308)
T 1h6u_A 151 -----------------TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDV 210 (308)
T ss_dssp -----------------TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBC
T ss_pred -----------------CCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcc
Confidence 889999999998776433 8889999999999999998876 88999999999999999998
Q ss_pred cccccCCCCCCEEEcccCCCCCCCCcC
Q 003936 543 PESLNQLSSLVSLKLSNNNLERIPERL 569 (785)
Q Consensus 543 p~~l~~l~~L~~L~L~~n~l~~lp~~l 569 (785)
+. +..+++|+.|++++|+++..|..+
T Consensus 211 ~~-l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 211 SP-LANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp GG-GTTCTTCCEEEEEEEEEECCCEEC
T ss_pred cc-ccCCCCCCEEEccCCeeecCCeee
Confidence 74 899999999999999998876543
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=2.9e-20 Score=194.90 Aligned_cols=155 Identities=21% Similarity=0.168 Sum_probs=96.3
Q ss_pred CCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccc---cChhhhhhhhcccccccCCCCccCCccccCCCCCCE
Q 003936 408 MFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIRE---VPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTS 484 (785)
Q Consensus 408 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~---lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~ 484 (785)
.+++|+.|++++|.+.+..+..++.+++|++|++++|.+.. ++... .+..+++|++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------------------~~~~l~~L~~ 201 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL---------------------CPHKFPAIQN 201 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS---------------------CTTSSCCCCS
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHH---------------------hhhcCCCCCE
Confidence 45566666666666555555555566666666666665432 11110 0112255555
Q ss_pred EEeeCCcCccc--CCC-ccccccccceEEecCeecccc-CcccCCC---CCCcEEEccCCccccccccccCCCCCCEEEc
Q 003936 485 LEIIDCKNFMR--LPD-EIGNLEYLKVLTIKGTAIREV-PESLGQL---SSLEWLVLSDNNLQIIPESLNQLSSLVSLKL 557 (785)
Q Consensus 485 L~l~~~~~~~~--~~~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l---~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 557 (785)
|++++|.+... .+. .++.+++|++|+|++|.++.+ |..+..+ ++|++|+|++|+++.+|..+. ++|+.|+|
T Consensus 202 L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~L 279 (310)
T 4glp_A 202 LALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDL 279 (310)
T ss_dssp CBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEEC
T ss_pred EECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEEC
Confidence 55655555311 111 134556677777777777665 5555555 588888888888888877664 78888888
Q ss_pred ccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 558 SNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 558 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
++|+++++|. +..+++|+.|++++|+++
T Consensus 280 s~N~l~~~~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 280 SSNRLNRAPQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred CCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence 8888888765 677888888888888865
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=187.94 Aligned_cols=205 Identities=21% Similarity=0.215 Sum_probs=154.2
Q ss_pred ccccceeeccCcccc-cCCccc--cCccccceecccCccCCcccc----ccccCCCCCCEEEeeCCCCCCCCCCCceecc
Q 003936 306 LQALNRLIIDGTAIR-ELPEGL--GQLALLSKLELKNCSELEYIS----SSIFKLKSVESIEISNCSNLKGFPEIPFCNI 378 (785)
Q Consensus 306 l~~L~~L~L~~n~i~-~lp~~l--~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l 378 (785)
+++|++|++++|.+. ..|..+ +.+++|++|++++|.+.+..+ ..+..+++|++|++++|..
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l------------ 157 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS------------ 157 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS------------
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc------------
Confidence 455777777777776 444445 677777888887777765433 2344677888888887751
Q ss_pred CCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCc--C--CcccCCcccchhhhccCccccccChhhh
Q 003936 379 DGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLER--L--PDELGNLEALEELRVEGTGIREVPKSLA 454 (785)
Q Consensus 379 ~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~--~--p~~~~~l~~L~~L~L~~n~i~~lp~~~~ 454 (785)
....+..+..+++|+.|++++|.+.+. + +..+..+++|++|++++|.++.++....
T Consensus 158 --------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 217 (310)
T 4glp_A 158 --------------------PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA 217 (310)
T ss_dssp --------------------CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH
T ss_pred --------------------chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH
Confidence 112234567888999999999987652 2 2334788999999999999987665311
Q ss_pred hhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccc---cccceEEecCeeccccCcccCCCCCCcE
Q 003936 455 QLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNL---EYLKVLTIKGTAIREVPESLGQLSSLEW 531 (785)
Q Consensus 455 ~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~L~~n~l~~lp~~~~~l~~L~~ 531 (785)
.+ +..+++|++|++++|.+.+..|..+..+ ++|++|++++|.++.+|..+. ++|++
T Consensus 218 ~l-------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~ 276 (310)
T 4glp_A 218 AL-------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRV 276 (310)
T ss_dssp HH-------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSC
T ss_pred HH-------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCE
Confidence 11 1122899999999999988878777766 699999999999999998764 89999
Q ss_pred EEccCCccccccccccCCCCCCEEEcccCCCCC
Q 003936 532 LVLSDNNLQIIPESLNQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 532 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~ 564 (785)
|+|++|+++++|. +..+++|+.|++++|+++.
T Consensus 277 L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 277 LDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp EECCSCCCCSCCC-TTSCCCCSCEECSSTTTSC
T ss_pred EECCCCcCCCCch-hhhCCCccEEECcCCCCCC
Confidence 9999999999876 7889999999999999864
No 83
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.8e-18 Score=177.21 Aligned_cols=180 Identities=28% Similarity=0.414 Sum_probs=149.9
Q ss_pred CCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeC
Q 003936 410 KSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIID 489 (785)
Q Consensus 410 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~ 489 (785)
++++.|++++|.+.+..+..+..+++|++|++++|.++.+|... +..+++|++|++++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~----------------------~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI----------------------FKELKNLETLWVTD 94 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT----------------------TSSCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh----------------------hcCCCCCCEEECCC
Confidence 57999999999988777778999999999999999998877543 22348999999999
Q ss_pred CcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEcccCCCCCCCC
Q 003936 490 CKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKLSNNNLERIPE 567 (785)
Q Consensus 490 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~ 567 (785)
|.+....+..+..+++|++|++++|.++.++ ..+..+++|++|+|++|.++.+|.. +..+++|+.|++++|+++.+|.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 9998877788899999999999999999885 4578999999999999999998865 8999999999999999999865
Q ss_pred -cCcCCCCCCEEeCCCCCCCCCccccccCCCCCCcccccccceeeeccc
Q 003936 568 -RLDPLSSLKYLDLFENNLDRIPEYLRSFPTSIPSEFTSLRLSVDLRNC 615 (785)
Q Consensus 568 -~l~~l~~L~~L~l~~n~l~~lp~~~~~~~~~ip~~l~~l~~~l~~~~C 615 (785)
.+..+++|++|++++|+++.+|+.. +. . .++|+.++++-+...|
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~--~~-~-l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGA--FD-S-LEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTT--TT-T-CTTCCEEECCSSCBCC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHH--hc-c-ccCCCEEEecCCCeeC
Confidence 5889999999999999999888641 10 1 3456664444444444
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=1.9e-19 Score=184.70 Aligned_cols=106 Identities=28% Similarity=0.456 Sum_probs=62.2
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L 557 (785)
++|++|++++|.+.+..+..+..+++|++|++++|.++.+|. .+..+++|++|++++|+++.+|.. ++.+++|+.|++
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 455555555555554444445555666666666666665543 345666666666666666665433 466666666666
Q ss_pred ccCCCCCCCC-cCcCCCCCCEEeCCCCCC
Q 003936 558 SNNNLERIPE-RLDPLSSLKYLDLFENNL 585 (785)
Q Consensus 558 ~~n~l~~lp~-~l~~l~~L~~L~l~~n~l 585 (785)
++|+++++|. .+..+++|+.|++++|++
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 6666666533 356666666666666663
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=6.2e-19 Score=180.87 Aligned_cols=158 Identities=20% Similarity=0.269 Sum_probs=106.6
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.++... +..+++|++|
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------------------~~~l~~L~~L 138 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV----------------------FDKLTNLTYL 138 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT----------------------TTTCTTCCEE
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHH----------------------hccCCCCCEE
Confidence 345556666666666555555555566666666666666666554321 1222677777
Q ss_pred EeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCccccccc-cccCCCCCCEEEcccCCCC
Q 003936 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLE 563 (785)
Q Consensus 486 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~ 563 (785)
++++|.+.+..+..+..+++|+.|++++|.++.+|. .++.+++|++|++++|+++++|. .+..+++|+.|++++|.+.
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 777777666666667777888888888888877754 45778888888888888888664 4688888888888888765
Q ss_pred CCCCcCcCCCCCCEEeCCCCCCC-CCccc
Q 003936 564 RIPERLDPLSSLKYLDLFENNLD-RIPEY 591 (785)
Q Consensus 564 ~lp~~l~~l~~L~~L~l~~n~l~-~lp~~ 591 (785)
. .+++|+.|+++.|.+. .+|..
T Consensus 219 ~------~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 219 C------TCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp C------CTTTTHHHHHHHHHTGGGBBCT
T ss_pred c------cCcHHHHHHHHHHhCCCcccCc
Confidence 3 3456777777777743 55544
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.78 E-value=1.6e-20 Score=203.45 Aligned_cols=183 Identities=19% Similarity=0.238 Sum_probs=119.7
Q ss_pred cCCCCCcEEEeccccCCC----cCCcccCCcccchhhhccCccccc-----cChhhhhh----------hhcccccccCC
Q 003936 407 CMFKSLTSLEIIDCKKLE----RLPDELGNLEALEELRVEGTGIRE-----VPKSLAQL----------ALSKLKLKKCS 467 (785)
Q Consensus 407 ~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~L~~n~i~~-----lp~~~~~l----------~L~~L~l~~~~ 467 (785)
..+++|+.|++++|.+.. .+|..+..+++|++|++++|.++. ++..+..+ .|+.|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 345555555555555444 244444555555555555555542 11222221 34455555544
Q ss_pred CC-ccCC---ccccCCCCCCEEEeeCCcCcc-----cCCCccccccccceEEecCeec-----cccCcccCCCCCCcEEE
Q 003936 468 SF-ESLP---SRLYVSKSLTSLEIIDCKNFM-----RLPDEIGNLEYLKVLTIKGTAI-----REVPESLGQLSSLEWLV 533 (785)
Q Consensus 468 ~~-~~lp---~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~L~~n~l-----~~lp~~~~~l~~L~~L~ 533 (785)
.. ..+| ..+..+++|++|++++|.+.. ..+..+..+++|+.|+|++|.+ ..+|..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 33 2222 234445788889998888762 3444777888899999998888 45677788888899999
Q ss_pred ccCCcccc-----ccccc--cCCCCCCEEEcccCCCCC-----CCCcC-cCCCCCCEEeCCCCCCCCCc
Q 003936 534 LSDNNLQI-----IPESL--NQLSSLVSLKLSNNNLER-----IPERL-DPLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 534 Ls~n~l~~-----lp~~l--~~l~~L~~L~L~~n~l~~-----lp~~l-~~l~~L~~L~l~~n~l~~lp 589 (785)
|++|.++. +|..+ +.+++|+.|+|++|.++. +|..+ .++++|++|++++|+++...
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 99998875 46666 348889999999998887 77777 56788999999998876543
No 87
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=9.4e-19 Score=186.58 Aligned_cols=237 Identities=19% Similarity=0.164 Sum_probs=163.2
Q ss_pred EEEEecCCCCcccccccccCceEEEcCCCCccccccc-ccCCCCCcEEecCCCccccCCC--CCccccccce-ecccccc
Q 003936 47 RYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDD-VQNLVSLKRIDLKYSKLLTKLP--DLSLAQNLEI-LDLGYCS 122 (785)
Q Consensus 47 ~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~--~l~~l~~L~~-L~Ls~n~ 122 (785)
++++.+++.++++|..-++++++|+|++|+|+.+|.+ |.++++|++|+|++|++.+.+| .|..+++|++ +.+++|.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 4677888888888883357899999999999999864 8999999999999998777666 3788888776 4555666
Q ss_pred CccccccccccCCcccEEecCCCCCCCcCCCcc--ccccccEEeccCCcCCCCCCCccccccccccccccccccccCcch
Q 003936 123 SLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSI 200 (785)
Q Consensus 123 ~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~--~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l 200 (785)
+....|..|+.+++|++|++++|. +..+|... ...++..|++.++..+..++....
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f--------------------- 149 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF--------------------- 149 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS---------------------
T ss_pred ccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccch---------------------
Confidence 666667788999999999999965 44444433 667778888887766665554322
Q ss_pred hcc-ccccceeccccccccccchhhhcccccccccccCCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCc
Q 003936 201 KCL-SNIGELLIYSCKRLENISSSIFKLQFLESIRIHRCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQ 279 (785)
Q Consensus 201 ~~l-~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~ 279 (785)
..+ ..++.|++++|.+....+. ...
T Consensus 150 ~~~~~~l~~L~L~~N~i~~i~~~-~f~----------------------------------------------------- 175 (350)
T 4ay9_X 150 VGLSFESVILWLNKNGIQEIHNS-AFN----------------------------------------------------- 175 (350)
T ss_dssp TTSBSSCEEEECCSSCCCEECTT-SST-----------------------------------------------------
T ss_pred hhcchhhhhhccccccccCCChh-hcc-----------------------------------------------------
Confidence 122 2344555555543321111 111
Q ss_pred cCCCCCcEEecccCCCCCCCCc-cccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCE
Q 003936 280 CMFKSLTSLEIIDCPNFERLPD-ELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVES 358 (785)
Q Consensus 280 ~~l~~L~~L~l~~~~~~~~lp~-~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 358 (785)
..+|++|.+.++..++.+|. .|..+++|++|++++|+++.+|.. .+.+|+.|.+.++..++.+|. +.++++|+.
T Consensus 176 --~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~ 250 (350)
T 4ay9_X 176 --GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT-LEKLVALME 250 (350)
T ss_dssp --TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-TTTCCSCCE
T ss_pred --ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC-chhCcChhh
Confidence 12233333333344445553 467888999999999999998864 356677777777777778874 778889999
Q ss_pred EEeeCC
Q 003936 359 IEISNC 364 (785)
Q Consensus 359 L~l~~~ 364 (785)
+++.++
T Consensus 251 l~l~~~ 256 (350)
T 4ay9_X 251 ASLTYP 256 (350)
T ss_dssp EECSCH
T ss_pred CcCCCC
Confidence 888654
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1.1e-18 Score=175.44 Aligned_cols=205 Identities=20% Similarity=0.282 Sum_probs=154.9
Q ss_pred CCCCCCCCccccCccccceeeccCcccccCCc-cccCccccceecccCcc-CCccccccccCCCCCCEEEeeCCCCCCCC
Q 003936 293 CPNFERLPDELGNLQALNRLIIDGTAIRELPE-GLGQLALLSKLELKNCS-ELEYISSSIFKLKSVESIEISNCSNLKGF 370 (785)
Q Consensus 293 ~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~l~~l 370 (785)
|..++.+|. + .++|++|++++|+++.+|. .++.+++|++|++++|. +.+..+..+.++++|++|++++|.
T Consensus 20 c~~l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n----- 91 (239)
T 2xwt_C 20 CKDIQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR----- 91 (239)
T ss_dssp ECSCSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-----
T ss_pred ccCccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-----
Confidence 333556665 3 2378889999988888776 57888899999999887 444444577888899999988732
Q ss_pred CCCceeccCCCCCcccCccccccCCCCCCccCC-ccccCCCCCcEEEeccccCCCcCCcccCCcccch---hhhccCc-c
Q 003936 371 PEIPFCNIDGSGIERIPSSVLKLNKCSKLESLP-SSLCMFKSLTSLEIIDCKKLERLPDELGNLEALE---ELRVEGT-G 445 (785)
Q Consensus 371 p~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~---~L~L~~n-~ 445 (785)
.+..++ ..+..+++|+.|++++|.+.+ +|. +..+++|+ .|++++| .
T Consensus 92 ---------------------------~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~ 142 (239)
T 2xwt_C 92 ---------------------------NLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPY 142 (239)
T ss_dssp ---------------------------TCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTT
T ss_pred ---------------------------CeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcc
Confidence 222333 356778889999999988665 666 77788887 8999998 8
Q ss_pred ccccChh-hhhhhhcccccccCCCCccCCccccCCCCCC-EEEeeCCcCcccCCCccccccccceEEecCee-ccccC-c
Q 003936 446 IREVPKS-LAQLALSKLKLKKCSSFESLPSRLYVSKSLT-SLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTA-IREVP-E 521 (785)
Q Consensus 446 i~~lp~~-~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp-~ 521 (785)
++.+|.. +.. +++|+ .|++++|++....+..+.. ++|+.|++++|. ++.+| .
T Consensus 143 l~~i~~~~~~~-----------------------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~ 198 (239)
T 2xwt_C 143 MTSIPVNAFQG-----------------------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKD 198 (239)
T ss_dssp CCEECTTTTTT-----------------------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTT
T ss_pred hhhcCcccccc-----------------------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHH
Confidence 8877643 333 37888 8888888877433344444 789999999994 88885 5
Q ss_pred ccCCC-CCCcEEEccCCccccccccccCCCCCCEEEcccC
Q 003936 522 SLGQL-SSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNN 560 (785)
Q Consensus 522 ~~~~l-~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n 560 (785)
.+..+ ++|+.|++++|+++.+|.. .+++|+.|+++++
T Consensus 199 ~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 199 AFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred HhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 67888 9999999999999998876 7889999998876
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.77 E-value=2.3e-20 Score=200.12 Aligned_cols=248 Identities=13% Similarity=0.127 Sum_probs=166.5
Q ss_pred cccCCCCCCCCccccCccccceeeccCcccccCC-----ccccCcc-ccceecccCccCCccccccccCC-----CCCCE
Q 003936 290 IIDCPNFERLPDELGNLQALNRLIIDGTAIRELP-----EGLGQLA-LLSKLELKNCSELEYISSSIFKL-----KSVES 358 (785)
Q Consensus 290 l~~~~~~~~lp~~l~~l~~L~~L~L~~n~i~~lp-----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~ 358 (785)
+..+...+.+|..+...++|++|++++|.++..+ ..+..++ +|++|++++|.+....+..+..+ ++|++
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 3333333444555555566888888888887665 3466677 78888888887766655555553 77777
Q ss_pred EEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCC-CCCcEEEeccccCCCcCCcc----cCC-
Q 003936 359 IEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMF-KSLTSLEIIDCKKLERLPDE----LGN- 432 (785)
Q Consensus 359 L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l-~~L~~L~l~~~~~~~~~p~~----~~~- 432 (785)
|++++|. ++ ..+ ...+...+..+ ++|+.|++++|.+.+..+.. +..
T Consensus 85 L~Ls~n~-l~----------------~~~-----------~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~ 136 (362)
T 3goz_A 85 LNLSGNF-LS----------------YKS-----------SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136 (362)
T ss_dssp EECCSSC-GG----------------GSC-----------HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS
T ss_pred EECcCCc-CC----------------hHH-----------HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC
Confidence 7777774 11 000 00111123344 67888888888765544433 333
Q ss_pred cccchhhhccCccccccC-----hhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccc----cc
Q 003936 433 LEALEELRVEGTGIREVP-----KSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIG----NL 503 (785)
Q Consensus 433 l~~L~~L~L~~n~i~~lp-----~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~----~l 503 (785)
.++|++|++++|.++... ..+... .++|++|++++|.+.+..+..+. ..
T Consensus 137 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~----------------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 194 (362)
T 3goz_A 137 PASITSLNLRGNDLGIKSSDELIQILAAI----------------------PANVNSLNLRGNNLASKNCAELAKFLASI 194 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTS----------------------CTTCCEEECTTSCGGGSCHHHHHHHHHTS
T ss_pred CCceeEEEccCCcCCHHHHHHHHHHHhcC----------------------CccccEeeecCCCCchhhHHHHHHHHHhC
Confidence 257888888888777322 222222 03899999999988776654443 34
Q ss_pred -cccceEEecCeeccc-----cCcccCC-CCCCcEEEccCCcccccc-----ccccCCCCCCEEEcccCCCCC-------
Q 003936 504 -EYLKVLTIKGTAIRE-----VPESLGQ-LSSLEWLVLSDNNLQIIP-----ESLNQLSSLVSLKLSNNNLER------- 564 (785)
Q Consensus 504 -~~L~~L~L~~n~l~~-----lp~~~~~-l~~L~~L~Ls~n~l~~lp-----~~l~~l~~L~~L~L~~n~l~~------- 564 (785)
++|++|+|++|.++. ++..+.. .++|++|+|++|.++..+ ..+..+++|+.|++++|.+..
T Consensus 195 ~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~ 274 (362)
T 3goz_A 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK 274 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred CCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence 589999999999987 6666666 458999999999997643 446788999999999998433
Q ss_pred -CCCcCcCCCCCCEEeCCCCCCCC
Q 003936 565 -IPERLDPLSSLKYLDLFENNLDR 587 (785)
Q Consensus 565 -lp~~l~~l~~L~~L~l~~n~l~~ 587 (785)
++..+..+++|+.||+++|++..
T Consensus 275 ~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 275 ALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHhccCCceEEEecCCCcCCC
Confidence 45667889999999999999763
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=6.2e-18 Score=171.24 Aligned_cols=165 Identities=24% Similarity=0.359 Sum_probs=138.1
Q ss_pred CccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccC
Q 003936 399 LESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYV 478 (785)
Q Consensus 399 l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~ 478 (785)
+..+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.++.++.. .+..
T Consensus 26 l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------------------~~~~ 81 (251)
T 3m19_A 26 LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG----------------------VFDD 81 (251)
T ss_dssp CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT----------------------TTTT
T ss_pred ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHh----------------------Hhcc
Confidence 334444443 5899999999998888888899999999999999988876543 2223
Q ss_pred CCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcc-cCCCCCCcEEEccCCccccccc-cccCCCCCCEEE
Q 003936 479 SKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPES-LGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLK 556 (785)
Q Consensus 479 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 556 (785)
+++|++|++++|.+.+..+..+..+++|++|++++|.++.+|.. +..+++|++|+|++|+++.+|. .++.+++|+.|+
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 161 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLS 161 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEE
Confidence 38999999999999888788889999999999999999988654 6889999999999999999876 689999999999
Q ss_pred cccCCCCCCCC-cCcCCCCCCEEeCCCCCCCC
Q 003936 557 LSNNNLERIPE-RLDPLSSLKYLDLFENNLDR 587 (785)
Q Consensus 557 L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~ 587 (785)
|++|+++.+|. .+..+++|+.|++++|+++.
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 99999998754 68889999999999998653
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=5.8e-18 Score=180.48 Aligned_cols=224 Identities=23% Similarity=0.261 Sum_probs=146.0
Q ss_pred ceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCcc
Q 003936 310 NRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSS 389 (785)
Q Consensus 310 ~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~ 389 (785)
+.++.++++++++|..+ .+++++|++++|++.+.-+..|.++++|++|+|++|...+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~--------------------- 68 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE--------------------- 68 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC---------------------
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC---------------------
Confidence 34555566666666544 3456666666665544333455666666666666664221
Q ss_pred ccccCCCCCCccCC-ccccCCCCCcE-EEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCC
Q 003936 390 VLKLNKCSKLESLP-SSLCMFKSLTS-LEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCS 467 (785)
Q Consensus 390 ~l~l~~~~~l~~l~-~~~~~l~~L~~-L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~ 467 (785)
.+| ..|.++++++. +.+.+|.+....|..|..+++|++|++++|.++.+|....
T Consensus 69 -----------~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~------------- 124 (350)
T 4ay9_X 69 -----------VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK------------- 124 (350)
T ss_dssp -----------EECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT-------------
T ss_pred -----------ccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhh-------------
Confidence 222 23455666554 3344455555556667777777777777777776654211
Q ss_pred CCccCCccccCCCCCCEEEeeCCcCcccCC-Ccccccc-ccceEEecCeeccccCcccCCCCCCcEEEccC-Cccccccc
Q 003936 468 SFESLPSRLYVSKSLTSLEIIDCKNFMRLP-DEIGNLE-YLKVLTIKGTAIREVPESLGQLSSLEWLVLSD-NNLQIIPE 544 (785)
Q Consensus 468 ~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~-~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~-n~l~~lp~ 544 (785)
....++..|++.++.....++ ..+..+. .++.|++++|.++.+|.......+|++|++++ |.++.+|.
T Consensus 125 ---------~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~ 195 (350)
T 4ay9_X 125 ---------IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195 (350)
T ss_dssp ---------CCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCT
T ss_pred ---------cccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCH
Confidence 111456667776654444333 4555554 68889999999999887776778899999975 67788885
Q ss_pred -cccCCCCCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCC-CCCCccc
Q 003936 545 -SLNQLSSLVSLKLSNNNLERIPERLDPLSSLKYLDLFENN-LDRIPEY 591 (785)
Q Consensus 545 -~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~-l~~lp~~ 591 (785)
.|..+++|+.|++++|+|+.+|.. .+.+|+.|.+.+|. ++.+|..
T Consensus 196 ~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l 242 (350)
T 4ay9_X 196 DVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTL 242 (350)
T ss_dssp TTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCT
T ss_pred HHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCc
Confidence 478899999999999999999864 36788888888877 8888853
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=2.4e-19 Score=190.50 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=57.6
Q ss_pred ceEEEcCCCCcccccccccCC--CCCcEEecCCCccccCCCCCccccccceeccccccCccc-cccccccCCcccEEecC
Q 003936 67 LVSLKMPGSKVTQLWDDVQNL--VSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTE-THSSIQYLNKLEVLDLD 143 (785)
Q Consensus 67 L~~L~L~~~~i~~l~~~~~~l--~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~-~~~~l~~l~~L~~L~L~ 143 (785)
++.++++++.+. +..+..+ ++++.|++++|.+....+.+..+++|++|++++|.+... ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 555666655554 2334444 666666666666555555555666666666666664433 55556666666666666
Q ss_pred CCCCCCcCCCcc-ccccccEEeccCC
Q 003936 144 RCKSLTSLPTSI-HSKYLKRLVLRGC 168 (785)
Q Consensus 144 ~~~~~~~~p~~~-~l~~L~~L~ls~~ 168 (785)
+|......+..+ .+++|++|++++|
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~ 152 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGC 152 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTC
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCC
Confidence 665433444434 4555666666555
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=7.1e-20 Score=198.39 Aligned_cols=138 Identities=17% Similarity=0.214 Sum_probs=93.7
Q ss_pred CCCcEEEeccccCC-CcCC---cccCCcccchhhhccCccccc--cChhhhhhhhcccccccCCCCccCCccccCCCCCC
Q 003936 410 KSLTSLEIIDCKKL-ERLP---DELGNLEALEELRVEGTGIRE--VPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLT 483 (785)
Q Consensus 410 ~~L~~L~l~~~~~~-~~~p---~~~~~l~~L~~L~L~~n~i~~--lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~ 483 (785)
++|+.|++++|.+. +.++ ..+..+++|++|++++|.++. +... .|..+..+++|+
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l-------------------~~~~l~~~~~L~ 219 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL-------------------LLEGLAYCQELK 219 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH-------------------HHTTGGGCTTCC
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH-------------------HHHHhhcCCCcc
Confidence 55566666665554 2233 234455566666666665551 1000 011222337888
Q ss_pred EEEeeCCcCc----ccCCCccccccccceEEecCeeccc-----cCccc--CCCCCCcEEEccCCcccc-----ccccc-
Q 003936 484 SLEIIDCKNF----MRLPDEIGNLEYLKVLTIKGTAIRE-----VPESL--GQLSSLEWLVLSDNNLQI-----IPESL- 546 (785)
Q Consensus 484 ~L~l~~~~~~----~~~~~~~~~l~~L~~L~L~~n~l~~-----lp~~~--~~l~~L~~L~Ls~n~l~~-----lp~~l- 546 (785)
.|++++|.+. ..+|..+..+++|+.|+|++|.++. +|..+ +.+++|++|+|++|.++. +|..+
T Consensus 220 ~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~ 299 (386)
T 2ca6_A 220 VLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 299 (386)
T ss_dssp EEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH
T ss_pred EEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH
Confidence 8888888875 5567777888888899998888874 35666 448999999999999987 88877
Q ss_pred cCCCCCCEEEcccCCCCCCC
Q 003936 547 NQLSSLVSLKLSNNNLERIP 566 (785)
Q Consensus 547 ~~l~~L~~L~L~~n~l~~lp 566 (785)
.++++|+.|++++|+++...
T Consensus 300 ~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 300 EKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHCTTCCEEECTTSBSCTTS
T ss_pred hcCCCceEEEccCCcCCcch
Confidence 67899999999999998643
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=2e-17 Score=185.47 Aligned_cols=97 Identities=27% Similarity=0.340 Sum_probs=55.6
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCC-------
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSL------- 552 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L------- 552 (785)
++|+.|++++|.+.+ +|. .+++|+.|++++|.++.+|. +. ++|+.|+|++|+|+.+|. +.. +|
T Consensus 140 ~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L 209 (571)
T 3cvr_A 140 ALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETE 209 (571)
T ss_dssp TTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CC
T ss_pred ccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccc
Confidence 455555555555443 333 34556666666666666655 43 566666666666666665 433 45
Q ss_pred CEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCC
Q 003936 553 VSLKLSNNNLERIPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 553 ~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
+.|+|++|+|+.+|..+..+++|+.|++++|+++
T Consensus 210 ~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 210 IFFRCRENRITHIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp EEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred eEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence 6666666666666666666666666666666654
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=3.4e-19 Score=189.25 Aligned_cols=241 Identities=17% Similarity=0.208 Sum_probs=141.8
Q ss_pred CcEEecccCCCCCCCCccccCc--cccceeeccCcccccCCccccCccccceecccCccCCcc-ccccccCCCCCCEEEe
Q 003936 285 LTSLEIIDCPNFERLPDELGNL--QALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEY-ISSSIFKLKSVESIEI 361 (785)
Q Consensus 285 L~~L~l~~~~~~~~lp~~l~~l--~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l 361 (785)
++.+++.++... +..+..+ ++++.|++++|.+...+..+..+++|++|++++|.+... ++..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 456666554322 3444555 677777887777776666566777788888887776544 6666667777777777
Q ss_pred eCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEecccc-CCC-cCCcccCCcccchhh
Q 003936 362 SNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCK-KLE-RLPDELGNLEALEEL 439 (785)
Q Consensus 362 ~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~-~~~-~~p~~~~~l~~L~~L 439 (785)
++|. .-...+..++.+++|+.|++++|. +.+ .++..+..+++|++|
T Consensus 126 ~~~~--------------------------------l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L 173 (336)
T 2ast_B 126 EGLR--------------------------------LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDEL 173 (336)
T ss_dssp TTCB--------------------------------CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEE
T ss_pred cCcc--------------------------------cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEE
Confidence 7764 111233445566777777777773 332 245555666666666
Q ss_pred hccCc-cccc--cChhhhhhhhcccccccCCCCccCCccccCCC-CCCEEEeeCCc--Cc-ccCCCccccccccceEEec
Q 003936 440 RVEGT-GIRE--VPKSLAQLALSKLKLKKCSSFESLPSRLYVSK-SLTSLEIIDCK--NF-MRLPDEIGNLEYLKVLTIK 512 (785)
Q Consensus 440 ~L~~n-~i~~--lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~-~L~~L~l~~~~--~~-~~~~~~~~~l~~L~~L~L~ 512 (785)
++++| .++. ++..+..+ + +|++|++++|. +. +.++..+..+++|+.|+++
T Consensus 174 ~l~~~~~l~~~~~~~~~~~l-----------------------~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~ 230 (336)
T 2ast_B 174 NLSWCFDFTEKHVQVAVAHV-----------------------SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 230 (336)
T ss_dssp ECCCCTTCCHHHHHHHHHHS-----------------------CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECT
T ss_pred cCCCCCCcChHHHHHHHHhc-----------------------ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCC
Confidence 66666 5553 34444433 5 77777777773 33 3345555566677777777
Q ss_pred Cee-cc-ccCcccCCCCCCcEEEccCCc-ccc-ccccccCCCCCCEEEcccCCCCCCCC-cCcCC-CCCCEEeCCCCCCC
Q 003936 513 GTA-IR-EVPESLGQLSSLEWLVLSDNN-LQI-IPESLNQLSSLVSLKLSNNNLERIPE-RLDPL-SSLKYLDLFENNLD 586 (785)
Q Consensus 513 ~n~-l~-~lp~~~~~l~~L~~L~Ls~n~-l~~-lp~~l~~l~~L~~L~L~~n~l~~lp~-~l~~l-~~L~~L~l~~n~l~ 586 (785)
+|. ++ ..+..+..+++|++|++++|. +.. ....+..+++|+.|++++| +++ .+..+ ..|+.|++++|+++
T Consensus 231 ~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~----i~~~~~~~l~~~l~~L~l~~n~l~ 306 (336)
T 2ast_B 231 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCSHFT 306 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS----SCTTCHHHHHHHSTTSEESCCCSC
T ss_pred CCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc----cCHHHHHHHHhhCcceEEecccCc
Confidence 766 43 345556666777777777774 221 1124566777777777776 222 12222 22455556666655
Q ss_pred C
Q 003936 587 R 587 (785)
Q Consensus 587 ~ 587 (785)
.
T Consensus 307 ~ 307 (336)
T 2ast_B 307 T 307 (336)
T ss_dssp C
T ss_pred c
Confidence 3
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=2.7e-17 Score=184.33 Aligned_cols=197 Identities=20% Similarity=0.210 Sum_probs=168.7
Q ss_pred HHHHhccc-----ccceeeeecCCCccccccCCCCCCCceEEEEecCCCCcccccccccCceEEEcCCCCcccccccccC
Q 003936 12 PYTFSKMT-----ELRLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDDVQN 86 (785)
Q Consensus 12 ~~~f~~l~-----~Lr~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~~~~~~ 86 (785)
+.+|.+++ +|+.|++++|.+ ..+|..+. ++|++|++++|.++.+| ..+++|++|++++|.++.+|. +..
T Consensus 47 ~~~~~~l~~C~~~~L~~L~Ls~n~L---~~lp~~l~-~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~-l~~ 120 (571)
T 3cvr_A 47 NEAVSLLKECLINQFSELQLNRLNL---SSLPDNLP-PQITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE-LPA 120 (571)
T ss_dssp HHHHHHHHHHHHTTCSEEECCSSCC---SCCCSCCC-TTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC-CCT
T ss_pred cchhhhccccccCCccEEEeCCCCC---CccCHhHc-CCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch-hhc
Confidence 34788887 999999999988 45777664 78999999999999999 778999999999999999988 665
Q ss_pred CCCCcEEecCCCccccCCCCCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCccccccccEEecc
Q 003936 87 LVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLR 166 (785)
Q Consensus 87 l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~ls 166 (785)
+|++|+|++|.+.. +|. .+++|++|++++|.+.+ +|. .+++|++|++++|. ++.+|. +. ++|+.|+++
T Consensus 121 --~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~-L~~lp~-l~-~~L~~L~Ls 188 (571)
T 3cvr_A 121 --SLKHLDVDNNQLTM-LPE--LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ-LTFLPE-LP-ESLEALDVS 188 (571)
T ss_dssp --TCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC-CSCCCC-CC-TTCCEEECC
T ss_pred --CCCEEECCCCcCCC-CCC--cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC-CCCcch-hh-CCCCEEECc
Confidence 99999999998665 666 78999999999998654 776 67899999999975 555887 65 899999999
Q ss_pred CCcCCCCCCCcccccc-------ccccccccccccccCcchhccccccceeccccccccccchhhhcccc
Q 003936 167 GCSNLKNLPKMTSCHL-------RSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQF 229 (785)
Q Consensus 167 ~~~~l~~lp~~~~~~L-------~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~ 229 (785)
+| .++.+|. ...+| + .|++++|.++.+|.++..+++|+.|++++|.+.+..|..+..+..
T Consensus 189 ~N-~L~~lp~-~~~~L~~~~~~L~-~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 189 TN-LLESLPA-VPVRNHHSEETEI-FFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp SS-CCSSCCC-CC--------CCE-EEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred CC-CCCchhh-HHHhhhcccccce-EEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 98 5778888 55577 8 999999999999999999999999999999999999988877655
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=6.4e-17 Score=163.75 Aligned_cols=179 Identities=18% Similarity=0.270 Sum_probs=120.9
Q ss_pred cccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCccc
Q 003936 307 QALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIERI 386 (785)
Q Consensus 307 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~l 386 (785)
...++++++++.++.+|..+. ++++.|++++|.+.+..+..+.++++|++|++++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~----------------------- 68 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDY----------------------- 68 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-----------------------
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCC-----------------------
Confidence 356788888888888887654 5788888888776655554455555555555544
Q ss_pred CccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccC
Q 003936 387 PSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKC 466 (785)
Q Consensus 387 p~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~ 466 (785)
|.+.+..+..+..+++|++|++++|.++.+|...
T Consensus 69 ---------------------------------n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------- 102 (251)
T 3m19_A 69 ---------------------------------NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGV------------- 102 (251)
T ss_dssp ---------------------------------SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-------------
T ss_pred ---------------------------------CcCCccCHhHhccCCcCCEEECCCCcccccChhH-------------
Confidence 4444444444445555555555555555444211
Q ss_pred CCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCccccccc-
Q 003936 467 SSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPE- 544 (785)
Q Consensus 467 ~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~- 544 (785)
+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.+|. .++.+++|++|+|++|+++.+|.
T Consensus 103 ---------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 103 ---------FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp ---------TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ---------hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 1122666667777766665555566778888888888888888865 67888899999999999888764
Q ss_pred cccCCCCCCEEEcccCCCCCC
Q 003936 545 SLNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 545 ~l~~l~~L~~L~L~~n~l~~l 565 (785)
.+..+++|+.|++++|.+..-
T Consensus 174 ~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSCCBCTT
T ss_pred HHhCCCCCCEEEeeCCceeCC
Confidence 688889999999999988643
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=8.6e-18 Score=173.92 Aligned_cols=154 Identities=26% Similarity=0.329 Sum_probs=112.7
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.+|. +.. +++|++|
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~-----------------------l~~L~~L 117 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKD-----------------------LKKLKSL 117 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTT-----------------------CTTCCEE
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hcc-----------------------CCCCCEE
Confidence 3445555666666555444322 5566666666666666655442 222 2677777
Q ss_pred EeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCC
Q 003936 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 486 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l 565 (785)
++++|.+.+. ..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.++.++. +..+++|+.|++++|+++.+
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l 193 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDL 193 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCC
Confidence 7777776553 3567788888888888888887 468889999999999999988776 88999999999999999988
Q ss_pred CCcCcCCCCCCEEeCCCCCCCCCcc
Q 003936 566 PERLDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 566 p~~l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
|. +..+++|+.|++++|+++..|.
T Consensus 194 ~~-l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 194 RA-LAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp GG-GTTCTTCSEEEEEEEEEECCCE
T ss_pred hh-hccCCCCCEEECcCCcccCCcc
Confidence 75 8889999999999998776653
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=3.6e-19 Score=190.85 Aligned_cols=252 Identities=13% Similarity=0.141 Sum_probs=167.5
Q ss_pred ccCCCCCCCCCCCccCCCCCcEEecccCCCCCCCC----ccccCcc-ccceeeccCcccccCC-ccccCc-----cccce
Q 003936 266 LKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERLP----DELGNLQ-ALNRLIIDGTAIRELP-EGLGQL-----ALLSK 334 (785)
Q Consensus 266 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~lp----~~l~~l~-~L~~L~L~~n~i~~lp-~~l~~l-----~~L~~ 334 (785)
++.+...+.+|.......+|++|++.+|......+ ..+..++ +|++|++++|.++... ..+..+ ++|++
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 44444555555555666779999999998544444 6678888 8999999999999653 345444 89999
Q ss_pred ecccCccCCcccccccc----CC-CCCCEEEeeCCCCCCCCCCCceeccCCCCCcccCccccccCCCCCCccCCccccC-
Q 003936 335 LELKNCSELEYISSSIF----KL-KSVESIEISNCSNLKGFPEIPFCNIDGSGIERIPSSVLKLNKCSKLESLPSSLCM- 408 (785)
Q Consensus 335 L~l~~~~~~~~~~~~~~----~l-~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~- 408 (785)
|++++|.+....+..+. .+ ++|++|++++|. ++. .+ ...+...+..
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~----------------~~-----------~~~l~~~l~~~ 136 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSS----------------KS-----------SSEFKQAFSNL 136 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGG----------------SC-----------HHHHHHHHTTS
T ss_pred EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCc----------------HH-----------HHHHHHHHHhC
Confidence 99999998776665443 34 899999999885 111 00 0111122333
Q ss_pred CCCCcEEEeccccCCCc----CCcccCCcc-cchhhhccCccccccCh-hhhhhhhcccccccCCCCccCCccccCC-CC
Q 003936 409 FKSLTSLEIIDCKKLER----LPDELGNLE-ALEELRVEGTGIREVPK-SLAQLALSKLKLKKCSSFESLPSRLYVS-KS 481 (785)
Q Consensus 409 l~~L~~L~l~~~~~~~~----~p~~~~~l~-~L~~L~L~~n~i~~lp~-~~~~l~L~~L~l~~~~~~~~lp~~~~~~-~~ 481 (785)
.++|+.|++++|.+.+. ++..+...+ +|++|++++|.++.... .+... +... ++
T Consensus 137 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~-------------------l~~~~~~ 197 (362)
T 3goz_A 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF-------------------LASIPAS 197 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH-------------------HHTSCTT
T ss_pred CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHH-------------------HHhCCCC
Confidence 35889999999887643 333444554 89999999998885543 22211 1111 37
Q ss_pred CCEEEeeCCcCccc----CCCcccc-ccccceEEecCeeccccC-----cccCCCCCCcEEEccCCccc--------ccc
Q 003936 482 LTSLEIIDCKNFMR----LPDEIGN-LEYLKVLTIKGTAIREVP-----ESLGQLSSLEWLVLSDNNLQ--------IIP 543 (785)
Q Consensus 482 L~~L~l~~~~~~~~----~~~~~~~-l~~L~~L~L~~n~l~~lp-----~~~~~l~~L~~L~Ls~n~l~--------~lp 543 (785)
|++|++++|.+... ++..+.. .++|++|+|++|.++..+ ..+..+++|++|++++|.+. .++
T Consensus 198 L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~ 277 (362)
T 3goz_A 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALG 277 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHH
T ss_pred CCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHH
Confidence 77777777776552 3334444 347888888888776543 34566778888888888733 245
Q ss_pred ccccCCCCCCEEEcccCCCCC
Q 003936 544 ESLNQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 544 ~~l~~l~~L~~L~L~~n~l~~ 564 (785)
..+..+++|+.|++++|++..
T Consensus 278 ~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 278 AAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp TTSTTCCEEEEECTTSCBCCG
T ss_pred HHhccCCceEEEecCCCcCCC
Confidence 567778888888888887764
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=3.5e-17 Score=169.34 Aligned_cols=132 Identities=27% Similarity=0.328 Sum_probs=102.6
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.++.++ .+..+ ++|+.|
T Consensus 86 l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~~~-~l~~l-----------------------~~L~~L 139 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISDIN-GLVHL-----------------------PQLESL 139 (291)
T ss_dssp GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCCCG-GGGGC-----------------------TTCCEE
T ss_pred cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCCCh-hhcCC-----------------------CCCCEE
Confidence 5566677777777776544 22 3667777777777777777653 23333 788888
Q ss_pred EeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCC
Q 003936 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 486 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l 565 (785)
++++|.+.+. ..+..+++|+.|++++|.++.++. +..+++|+.|++++|.++.+|. +..+++|+.|++++|+++..
T Consensus 140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECC
T ss_pred EccCCcCCcc--hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCC
Confidence 8888887664 567888999999999999998876 8899999999999999999875 89999999999999998875
Q ss_pred CC
Q 003936 566 PE 567 (785)
Q Consensus 566 p~ 567 (785)
|.
T Consensus 216 ~~ 217 (291)
T 1h6t_A 216 PI 217 (291)
T ss_dssp CE
T ss_pred cc
Confidence 53
No 101
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=4.2e-19 Score=200.24 Aligned_cols=203 Identities=22% Similarity=0.197 Sum_probs=146.2
Q ss_pred cCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCC
Q 003936 304 GNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGI 383 (785)
Q Consensus 304 ~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i 383 (785)
..++.|+.|+|++|.++.+|..++.+++|+.|++++|.....++.....
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~------------------------------- 394 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA------------------------------- 394 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------------------------
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHh-------------------------------
Confidence 5677888888888888888888888888888888765432222211000
Q ss_pred cccCccccccCCCCCCccCCccccCCCCCcEEE-eccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccc
Q 003936 384 ERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLE-IIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLK 462 (785)
Q Consensus 384 ~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~-l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~ 462 (785)
+...+..|..++.+++|+.|+ ++.+ .+..|+.+.+.+|.++.+|.
T Consensus 395 ------------~~~~~~~~~~l~~l~~L~~L~~l~~n-----------~~~~L~~l~l~~n~i~~l~~----------- 440 (567)
T 1dce_A 395 ------------LDPLLYEKETLQYFSTLKAVDPMRAA-----------YLDDLRSKFLLENSVLKMEY----------- 440 (567)
T ss_dssp ------------HCTGGGHHHHHHHHHHHHHHCGGGHH-----------HHHHHHHHHHHHHHHHHHHH-----------
T ss_pred ------------cccccCCHHHHHHHHhcccCcchhhc-----------ccchhhhhhhhcccccccCc-----------
Confidence 001112233334444444444 2222 12344444444444443332
Q ss_pred cccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccc
Q 003936 463 LKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQII 542 (785)
Q Consensus 463 l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l 542 (785)
..|+.|++++|.+.+ +|. ++.+++|+.|+|++|.++.+|..++.+++|+.|+|++|.++++
T Consensus 441 -----------------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l 501 (567)
T 1dce_A 441 -----------------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 501 (567)
T ss_dssp -----------------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred -----------------cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC
Confidence 458889999998776 566 8889999999999999999999999999999999999999998
Q ss_pred cccccCCCCCCEEEcccCCCCCC--CCcCcCCCCCCEEeCCCCCCCCCccc
Q 003936 543 PESLNQLSSLVSLKLSNNNLERI--PERLDPLSSLKYLDLFENNLDRIPEY 591 (785)
Q Consensus 543 p~~l~~l~~L~~L~L~~n~l~~l--p~~l~~l~~L~~L~l~~n~l~~lp~~ 591 (785)
| .++.+++|+.|+|++|+++++ |..+..+++|+.|++++|+++.+|+.
T Consensus 502 p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 502 D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 8 899999999999999999987 88899999999999999998877654
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=7.6e-17 Score=182.89 Aligned_cols=193 Identities=21% Similarity=0.256 Sum_probs=113.2
Q ss_pred ccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCCCcc
Q 003936 306 LQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSGIER 385 (785)
Q Consensus 306 l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~i~~ 385 (785)
+..+..+.+..+.+..+.. +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.
T Consensus 20 l~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~-------------------- 76 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNK-------------------- 76 (605)
T ss_dssp HHHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSC--------------------
T ss_pred HHHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCC--------------------
Confidence 4456666777766665543 4667788888888876543 33 36666777777776663
Q ss_pred cCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhccccccc
Q 003936 386 IPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKK 465 (785)
Q Consensus 386 lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~ 465 (785)
+..++. +..+++|+.|+|++|.+.+ +| .+..+++|+.|+|++|.+..++. +..+
T Consensus 77 -------------l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l~~-l~~l--------- 130 (605)
T 1m9s_A 77 -------------LTDIKP-LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISDING-LVHL--------- 130 (605)
T ss_dssp -------------CCCCGG-GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCCCGG-GGGC---------
T ss_pred -------------CCCChh-hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCCCcc-ccCC---------
Confidence 222222 5566777777777776543 22 45666666666666666665431 2222
Q ss_pred CCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCcccccccc
Q 003936 466 CSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPES 545 (785)
Q Consensus 466 ~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~ 545 (785)
++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+..+++ +..+++|+.|+|++|.+..+| .
T Consensus 131 --------------~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~-~ 192 (605)
T 1m9s_A 131 --------------PQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR-A 192 (605)
T ss_dssp --------------TTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-G
T ss_pred --------------CccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-H
Confidence 5666666666665543 345555666666666666655544 555666666666666655553 3
Q ss_pred ccCCCCCCEEEcccCCCCCC
Q 003936 546 LNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 546 l~~l~~L~~L~L~~n~l~~l 565 (785)
+..+++|+.|+|++|++...
T Consensus 193 l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 193 LAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GTTCTTCSEEECCSEEEECC
T ss_pred HccCCCCCEEEccCCcCcCC
Confidence 55556666666666655543
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.1e-16 Score=155.33 Aligned_cols=152 Identities=17% Similarity=0.232 Sum_probs=127.0
Q ss_pred cCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEE
Q 003936 407 CMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLE 486 (785)
Q Consensus 407 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~ 486 (785)
..+++|+.|++++|.+. .+| .+..+++|++|++++|.++.++ .+ ..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~~-~l-----------------------~~l~~L~~L~ 94 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNYN-PI-----------------------SGLSNLERLR 94 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCCG-GG-----------------------TTCTTCCEEE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcch-hh-----------------------hcCCCCCEEE
Confidence 56778888888888765 555 5778888888888888766554 22 2348999999
Q ss_pred eeCCcCcccCCCccccccccceEEecCeeccc-cCcccCCCCCCcEEEccCCc-cccccccccCCCCCCEEEcccCCCCC
Q 003936 487 IIDCKNFMRLPDEIGNLEYLKVLTIKGTAIRE-VPESLGQLSSLEWLVLSDNN-LQIIPESLNQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 487 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~l~~ 564 (785)
+++|.+.+..+..+..+++|+.|++++|.++. .|..++.+++|++|++++|. ++.+| .+..+++|+.|++++|+++.
T Consensus 95 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 95 IMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp EECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC
T ss_pred eECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC
Confidence 99999988888889999999999999999986 57778999999999999998 88887 68999999999999999999
Q ss_pred CCCcCcCCCCCCEEeCCCCCCC
Q 003936 565 IPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 565 lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
++ .+..+++|++|++++|++.
T Consensus 174 ~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 174 YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CT-TGGGCSSCCEEEECBC---
T ss_pred hH-HhccCCCCCEEEeeCcccC
Confidence 87 7889999999999999865
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.63 E-value=1.3e-15 Score=151.61 Aligned_cols=111 Identities=27% Similarity=0.326 Sum_probs=80.0
Q ss_pred ccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCccccccccccCCCCCCE
Q 003936 476 LYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVS 554 (785)
Q Consensus 476 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~ 554 (785)
+..+++|++|++++|.+....+..+..+++|+.|+|++|.++.+|. .+..+++|++|+|++|+++.+|..+..+++|+.
T Consensus 60 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 139 (229)
T 3e6j_A 60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTH 139 (229)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSE
T ss_pred hhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCE
Confidence 3334777777777777755555666777777777777777777754 356777777777777777777777777777777
Q ss_pred EEcccCCCCCCC-CcCcCCCCCCEEeCCCCCCC
Q 003936 555 LKLSNNNLERIP-ERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 555 L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~l~ 586 (785)
|+|++|+++.+| ..+..+++|+.|++++|++.
T Consensus 140 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 140 LALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 777777777765 34677777777777777654
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.63 E-value=5e-16 Score=176.17 Aligned_cols=175 Identities=21% Similarity=0.290 Sum_probs=127.4
Q ss_pred ccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCCC
Q 003936 303 LGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGSG 382 (785)
Q Consensus 303 l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~~ 382 (785)
+..+++|+.|++++|.+..++. ++.+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~----------------- 98 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK----------------- 98 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC-----------------
T ss_pred hhcCCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC-----------------
Confidence 4567778888888888887764 7778888888888877665444 6777888888887774
Q ss_pred CcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccc
Q 003936 383 IERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLK 462 (785)
Q Consensus 383 i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~ 462 (785)
+..+| .+..+++|+.|++++|.+.+ + ..+..+++|+.|+|++|.++.+ ..+..
T Consensus 99 ----------------l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~------- 151 (605)
T 1m9s_A 99 ----------------IKDLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSR------- 151 (605)
T ss_dssp ----------------CCCCT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGS-------
T ss_pred ----------------CCCCh-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcc-------
Confidence 12222 35677888888888887665 2 4477788888888888877765 22333
Q ss_pred cccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccc
Q 003936 463 LKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQII 542 (785)
Q Consensus 463 l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l 542 (785)
+++|+.|+|++|.+.+..| +..+++|+.|+|++|.++.+| .+..+++|+.|+|++|.+...
T Consensus 152 ----------------l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 152 ----------------LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp ----------------CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred ----------------cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCC
Confidence 3788888888888776555 777888888888888888775 477788888888888887765
Q ss_pred c
Q 003936 543 P 543 (785)
Q Consensus 543 p 543 (785)
|
T Consensus 213 p 213 (605)
T 1m9s_A 213 P 213 (605)
T ss_dssp C
T ss_pred c
Confidence 5
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.63 E-value=2.4e-15 Score=147.35 Aligned_cols=168 Identities=24% Similarity=0.381 Sum_probs=126.6
Q ss_pred cEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcC
Q 003936 413 TSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKN 492 (785)
Q Consensus 413 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~ 492 (785)
+.++.+++.+. .+|..+ .++|++|++++|.++.++.. .+..+++|++|++++|++
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~----------------------~~~~l~~L~~L~l~~n~l 64 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNG----------------------VFDELTSLTQLYLGGNKL 64 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTT----------------------TTTTCTTCSEEECCSSCC
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChh----------------------hhcccccCcEEECCCCcc
Confidence 45555555432 334322 34677777777777665543 233448999999999998
Q ss_pred cccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEcccCCCCCCCCc-C
Q 003936 493 FMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKLSNNNLERIPER-L 569 (785)
Q Consensus 493 ~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~-l 569 (785)
.+..+..+..+++|++|++++|.++.+|. .+..+++|++|++++|+++.+|.. +..+++|+.|++++|+++++|.. +
T Consensus 65 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 144 (208)
T 2o6s_A 65 QSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVF 144 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHh
Confidence 87767778899999999999999998865 468899999999999999987754 78899999999999999988654 7
Q ss_pred cCCCCCCEEeCCCCCCC-CCcc------ccccCCCCCCccccc
Q 003936 570 DPLSSLKYLDLFENNLD-RIPE------YLRSFPTSIPSEFTS 605 (785)
Q Consensus 570 ~~l~~L~~L~l~~n~l~-~lp~------~~~~~~~~ip~~l~~ 605 (785)
..+++|++|++++|++. ..|. ....+.|.+|..+..
T Consensus 145 ~~l~~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~g~ip~~~~~ 187 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGS 187 (208)
T ss_dssp TTCTTCCEEECCSCCBCCCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred ccCCCccEEEecCCCeecCCCCHHHHHHHHHhCCceeeccCcc
Confidence 88999999999999843 4442 234566777777665
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.62 E-value=2.4e-15 Score=147.41 Aligned_cols=174 Identities=18% Similarity=0.161 Sum_probs=124.1
Q ss_pred ceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc---ccccCceEEEcCCCCccccccc-ccCCCCCcEEecCC
Q 003936 22 RLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLWDD-VQNLVSLKRIDLKY 97 (785)
Q Consensus 22 r~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~ 97 (785)
+.++.+++.+ ..+|.++. ++|++|++++|.++.++. ..+++|++|++++|+++.++.. +..+++|++|+|++
T Consensus 10 ~~v~c~~~~l---~~~p~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGR---TSVPTGIP-AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCC---SSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCc---cCCCCCCC-CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 4566666655 45565543 678888888888887776 5788888888888888877654 67888888888888
Q ss_pred CccccCCCC-CccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCc-c-ccccccEEeccCCcCCCCC
Q 003936 98 SKLLTKLPD-LSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTS-I-HSKYLKRLVLRGCSNLKNL 174 (785)
Q Consensus 98 n~~~~~~~~-l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~-~-~l~~L~~L~ls~~~~l~~l 174 (785)
|.+....+. +..+++|++|++++|.+.+..+..+..+++|++|++++|... .+|.. + .+++|++|++++|...
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCee---
Confidence 876654443 678888888888888766555556788888888888886544 44443 4 6788888888887422
Q ss_pred CCccccccccccccccccccccCcchhccccccceeccccccccccchhhhcccc
Q 003936 175 PKMTSCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFKLQF 229 (785)
Q Consensus 175 p~~~~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~ 229 (785)
+.+++|+.|+++.|.+.+.+|..++.++.
T Consensus 162 --------------------------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 162 --------------------------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp --------------------------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred --------------------------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 23456677777777777777766655443
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.62 E-value=2.2e-15 Score=148.83 Aligned_cols=111 Identities=26% Similarity=0.418 Sum_probs=82.8
Q ss_pred ccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcc-cCCCCCCcEEEccCCccccc-cccccCCCCCC
Q 003936 476 LYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPES-LGQLSSLEWLVLSDNNLQII-PESLNQLSSLV 553 (785)
Q Consensus 476 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~ 553 (785)
+..+++|++|++++|.+.+..|..+.++++|++|+|++|.++.+|.. |..+++|++|+|++|+++.+ |..+..+++|+
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 131 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN 131 (220)
T ss_dssp STTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC
Confidence 33447788888888887777777788888888888888888877643 57778888888888888775 45677788888
Q ss_pred EEEcccCCCCCCCC-cCcCCCCCCEEeCCCCCCC
Q 003936 554 SLKLSNNNLERIPE-RLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 554 ~L~L~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~ 586 (785)
.|+|++|+++.+|. .+..+++|+.|++++|++.
T Consensus 132 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 132 LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88888888877654 4677778888888887643
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.61 E-value=2.5e-15 Score=148.44 Aligned_cols=150 Identities=20% Similarity=0.285 Sum_probs=113.5
Q ss_pred cEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcC
Q 003936 413 TSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKN 492 (785)
Q Consensus 413 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~ 492 (785)
+.++++++.+. .+|..+. ..+++|++++|.++.++.. ..+..+++|++|++++|.+
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~---------------------~~~~~l~~L~~L~L~~N~i 69 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEAT---------------------GIFKKLPQLRKINFSNNKI 69 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCC---------------------CCGGGCTTCCEEECCSSCC
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCch---------------------hhhccCCCCCEEECCCCcC
Confidence 46777776543 3554332 3356667777666655321 1233448899999999988
Q ss_pred cccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCccccc-cccccCCCCCCEEEcccCCCCCC-CCcC
Q 003936 493 FMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLKLSNNNLERI-PERL 569 (785)
Q Consensus 493 ~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~n~l~~l-p~~l 569 (785)
.+..+..+.++++|++|+|++|.++.++. .|..+++|++|+|++|+++.+ |..+..+++|+.|+|++|+++++ |..+
T Consensus 70 ~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 149 (220)
T 2v70_A 70 TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149 (220)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT
T ss_pred CEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh
Confidence 88777788889999999999999888854 488889999999999998886 56788889999999999999886 7778
Q ss_pred cCCCCCCEEeCCCCCCC
Q 003936 570 DPLSSLKYLDLFENNLD 586 (785)
Q Consensus 570 ~~l~~L~~L~l~~n~l~ 586 (785)
..+++|+.|++++|++.
T Consensus 150 ~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCTTCCEEECCSCCEE
T ss_pred cCCCCCCEEEecCcCCc
Confidence 88899999999988754
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=4.4e-17 Score=183.75 Aligned_cols=99 Identities=26% Similarity=0.299 Sum_probs=69.7
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccc--cccccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQII--PESLNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~l--p~~l~~l~~L~~L~L 557 (785)
++|+.|++++|.+. .+|..++.+++|+.|+|++|.++.+| .++.+++|+.|+|++|+++++ |..++.+++|+.|+|
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L 540 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL 540 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence 44555555555544 44555666667777777777777777 677788888888888888876 777888888888888
Q ss_pred ccCCCCCCCCcCc----CCCCCCEEeC
Q 003936 558 SNNNLERIPERLD----PLSSLKYLDL 580 (785)
Q Consensus 558 ~~n~l~~lp~~l~----~l~~L~~L~l 580 (785)
++|+++++|+.+. .+++|+.|++
T Consensus 541 ~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 541 QGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred cCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8888887765442 3677887764
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.60 E-value=5.3e-15 Score=147.10 Aligned_cols=142 Identities=23% Similarity=0.287 Sum_probs=124.3
Q ss_pred CccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccC
Q 003936 399 LESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYV 478 (785)
Q Consensus 399 l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~ 478 (785)
+..+|..+ .++|+.|++++|.+.+..|..+..+++|+.|++++|.++.+|... +..
T Consensus 31 l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~----------------------~~~ 86 (229)
T 3e6j_A 31 HASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV----------------------FDS 86 (229)
T ss_dssp CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT----------------------TTT
T ss_pred cCccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh----------------------ccc
Confidence 34455443 378999999999999988999999999999999999998887542 223
Q ss_pred CCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccc-cccCCCCCCEEEc
Q 003936 479 SKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKL 557 (785)
Q Consensus 479 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L 557 (785)
+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|++|+|++|+++.+|. .+..+++|+.|++
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 389999999999998887788899999999999999999999999999999999999999999874 5899999999999
Q ss_pred ccCCCCC
Q 003936 558 SNNNLER 564 (785)
Q Consensus 558 ~~n~l~~ 564 (785)
++|.+..
T Consensus 167 ~~N~~~c 173 (229)
T 3e6j_A 167 FGNPWDC 173 (229)
T ss_dssp TTSCBCT
T ss_pred eCCCccC
Confidence 9999874
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.60 E-value=1.6e-15 Score=162.14 Aligned_cols=110 Identities=25% Similarity=0.421 Sum_probs=55.9
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCccccc-cccccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQII-PESLNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L 557 (785)
++|++|++++|.+.+..+..+.++++|+.|+|++|.++.++. .|..+++|++|+|++|+++.+ |..|..+++|+.|+|
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence 444444444444444444445555555555555555555432 345555555555555555553 344555555555555
Q ss_pred ccCCCCCCCCcC----cCCCCCCEEeCCCCCCCCCc
Q 003936 558 SNNNLERIPERL----DPLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 558 ~~n~l~~lp~~l----~~l~~L~~L~l~~n~l~~lp 589 (785)
++|+++.+|..+ ..+++|+.|+|++|+|+.+|
T Consensus 144 ~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 555555554432 34555555555555555554
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.59 E-value=1.8e-15 Score=153.92 Aligned_cols=154 Identities=23% Similarity=0.268 Sum_probs=126.3
Q ss_pred cccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCE
Q 003936 405 SLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTS 484 (785)
Q Consensus 405 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~ 484 (785)
.+..+++|+.|++++|.+. .++ .+..+++|+.|++++|.++.++. +..+ ++|++
T Consensus 36 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l-----------------------~~L~~ 89 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP-LKDL-----------------------TKLEE 89 (263)
T ss_dssp CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG-GTTC-----------------------SSCCE
T ss_pred chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh-hccC-----------------------CCCCE
Confidence 3567788888888888654 345 57788888888888888887765 4443 89999
Q ss_pred EEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCC
Q 003936 485 LEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 485 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~ 564 (785)
|++++|++.+ +|.. .. ++|+.|++++|.++.++ .+..+++|+.|++++|+++.++ .++.+++|+.|++++|+++.
T Consensus 90 L~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 90 LSVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp EECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB
T ss_pred EECCCCccCC-cCcc-cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc
Confidence 9999998866 3332 22 89999999999999886 4889999999999999999986 68899999999999999998
Q ss_pred CCCcCcCCCCCCEEeCCCCCCCCCcc
Q 003936 565 IPERLDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 565 lp~~l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
+ ..+..+++|+.|++++|++...|.
T Consensus 165 ~-~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 165 T-GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp C-TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred h-HHhccCCCCCEEeCCCCcccCCcc
Confidence 8 668899999999999999776653
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=1.4e-15 Score=147.52 Aligned_cols=149 Identities=18% Similarity=0.213 Sum_probs=114.7
Q ss_pred CceEEEEecCCCCccccc-ccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCC-CCCccccccceeccccc
Q 003936 44 TELRYFEWHQFPLKTLNI-LHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKL-PDLSLAQNLEILDLGYC 121 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~-~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~-~~l~~l~~L~~L~Ls~n 121 (785)
++|++|++++|.++.+|. ..+++|++|++++|.++.++ .+..+++|++|++++|.+.... +.++.+++|++|++++|
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n 122 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence 788999999999888888 88889999999998877664 6788899999999998876543 46888899999999998
Q ss_pred cCccccccccccCCcccEEecCCCCCCCcCCCccccccccEEeccCCcCCCCCCCccccccccccccccccccccCcchh
Q 003936 122 SSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSIHSKYLKRLVLRGCSNLKNLPKMTSCHLRSTLPLLGVGIEELPSSIK 201 (785)
Q Consensus 122 ~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~~l~~L~~L~ls~~~~l~~lp~~~~~~L~~~L~l~~~~i~~lp~~l~ 201 (785)
.+....+..++.+++|++|++++|..++.+|....+++|++|++++|. + ..++ .+.
T Consensus 123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i----------------------~~~~-~l~ 178 (197)
T 4ezg_A 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-V----------------------HDYR-GIE 178 (197)
T ss_dssp BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-C----------------------CCCT-TGG
T ss_pred ccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-C----------------------cChH-Hhc
Confidence 877777888888899999999987767777643378888888887763 2 2222 455
Q ss_pred ccccccceeccccccc
Q 003936 202 CLSNIGELLIYSCKRL 217 (785)
Q Consensus 202 ~l~~L~~L~L~~~~~~ 217 (785)
.+++|+.|++++|++.
T Consensus 179 ~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 179 DFPKLNQLYAFSQTIG 194 (197)
T ss_dssp GCSSCCEEEECBC---
T ss_pred cCCCCCEEEeeCcccC
Confidence 6777777777777643
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=1.6e-15 Score=154.15 Aligned_cols=131 Identities=24% Similarity=0.320 Sum_probs=91.8
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.++.+|... . ++|+.|
T Consensus 59 l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~------------------------~-~~L~~L 111 (263)
T 1xeu_A 59 MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIP------------------------S-ACLSRL 111 (263)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCC------------------------C-SSCCEE
T ss_pred HhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccc------------------------c-CcccEE
Confidence 3344555555555554433222 555666666666666655544210 0 567777
Q ss_pred EeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCCCCCEEEcccCCCCCC
Q 003936 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLSSLVSLKLSNNNLERI 565 (785)
Q Consensus 486 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~l~~l 565 (785)
++++|.+.+. ..+..+++|+.|++++|.++.++ .+..+++|++|++++|.++.+ ..+..+++|+.|++++|+++..
T Consensus 112 ~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 112 FLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECC
T ss_pred EccCCccCCC--hhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCC
Confidence 7777776653 24777888888888888888886 588899999999999999888 6788899999999999988876
Q ss_pred CC
Q 003936 566 PE 567 (785)
Q Consensus 566 p~ 567 (785)
|.
T Consensus 188 ~~ 189 (263)
T 1xeu_A 188 PV 189 (263)
T ss_dssp CE
T ss_pred cc
Confidence 54
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=2.3e-15 Score=142.01 Aligned_cols=109 Identities=28% Similarity=0.356 Sum_probs=75.2
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccc-cCcccCCCCCCcEEEccCCcccccc--ccccCCCCCCEEE
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIRE-VPESLGQLSSLEWLVLSDNNLQIIP--ESLNQLSSLVSLK 556 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~ 556 (785)
++|++|++++|.+.+. ..+..+++|++|++++|.++. +|..+..+++|++|++++|.++.+| ..+..+++|+.|+
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 4555555555554433 455566667777777776666 5655566777777777777777765 5677777788888
Q ss_pred cccCCCCCCCC----cCcCCCCCCEEeCCCCCCCCCcc
Q 003936 557 LSNNNLERIPE----RLDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 557 L~~n~l~~lp~----~l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
+++|.++.+|. .+..+++|++|++++|.+.++|+
T Consensus 127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred eeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 88887777766 56777788888888887776664
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=3.8e-15 Score=140.48 Aligned_cols=138 Identities=20% Similarity=0.267 Sum_probs=121.7
Q ss_pred CCCCCcEEEeccccCC-CcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEE
Q 003936 408 MFKSLTSLEIIDCKKL-ERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLE 486 (785)
Q Consensus 408 ~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~ 486 (785)
..++|+.|++++|.+. +.+|..+..+++|+.|++++|.++.+ ..+. .+++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~-----------------------~l~~L~~L~ 77 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLP-----------------------KLPKLKKLE 77 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCC-----------------------CCSSCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhc-----------------------cCCCCCEEE
Confidence 4578999999999987 67888889999999999999988876 3333 338999999
Q ss_pred eeCCcCcccCCCccccccccceEEecCeeccccC--cccCCCCCCcEEEccCCccccccc----cccCCCCCCEEEcccC
Q 003936 487 IIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP--ESLGQLSSLEWLVLSDNNLQIIPE----SLNQLSSLVSLKLSNN 560 (785)
Q Consensus 487 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~n 560 (785)
+++|.+.+.+|..+..+++|+.|++++|.++.+| ..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|
T Consensus 78 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 78 LSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 9999998888888888999999999999999986 789999999999999999999887 7899999999999999
Q ss_pred CCCCCCCcC
Q 003936 561 NLERIPERL 569 (785)
Q Consensus 561 ~l~~lp~~l 569 (785)
.+.++|++.
T Consensus 158 ~~~~~~~~~ 166 (168)
T 2ell_A 158 EDQEAPDSD 166 (168)
T ss_dssp TSCBCCSSS
T ss_pred Chhhccccc
Confidence 999988754
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.56 E-value=1.2e-14 Score=143.47 Aligned_cols=132 Identities=20% Similarity=0.292 Sum_probs=114.6
Q ss_pred CCCcEEEeccccCCCcCCcccCCcccchhhhccCcccccc-ChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEee
Q 003936 410 KSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREV-PKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEII 488 (785)
Q Consensus 410 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~ 488 (785)
++|+.|++++|.+.+..+..|..+++|+.|++++|.++.+ |..+.. +++|++|+++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-----------------------l~~L~~L~Ls 88 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-----------------------LRSLNSLVLY 88 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-----------------------CSSCCEEECC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-----------------------CcCCCEEECC
Confidence 6899999999988877777888999999999999988866 444444 4899999999
Q ss_pred CCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCccccccc-cccCCCCCCEEEcccCCCCC
Q 003936 489 DCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 489 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~ 564 (785)
+|.+....+..+.++++|+.|+|++|.++.+ |..|..+++|++|+|++|+++.++. .+..+++|+.|++++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9999877777789999999999999999988 6778999999999999999999875 58899999999999998753
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.56 E-value=1e-14 Score=156.00 Aligned_cols=171 Identities=22% Similarity=0.248 Sum_probs=144.4
Q ss_pred cEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhh--hh-hhcccccccCCCCccCCccccCCCCCCEEEeeC
Q 003936 413 TSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLA--QL-ALSKLKLKKCSSFESLPSRLYVSKSLTSLEIID 489 (785)
Q Consensus 413 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~--~l-~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~ 489 (785)
+.++++++.+ ..+|..+. +.++.|+|++|.++.++.... .+ .|+.|++++|......+..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l-~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQL-PNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCC-SSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCc-CccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 6788888764 44676543 458999999999998876543 33 499999999988777778899999999999999
Q ss_pred CcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCccccccccc----cCCCCCCEEEcccCCCCC
Q 003936 490 CKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIPESL----NQLSSLVSLKLSNNNLER 564 (785)
Q Consensus 490 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~L~~n~l~~ 564 (785)
|++....+..+.++++|+.|+|++|.++.+ |..|..+++|+.|+|++|+++.+|..+ ..+++|+.|+|++|+|+.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 999888888899999999999999999988 678999999999999999999998764 679999999999999999
Q ss_pred CCC-cCcCCCC--CCEEeCCCCCCC
Q 003936 565 IPE-RLDPLSS--LKYLDLFENNLD 586 (785)
Q Consensus 565 lp~-~l~~l~~--L~~L~l~~n~l~ 586 (785)
+|. .+..++. |+.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 873 4666666 488999999865
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=3.9e-14 Score=139.75 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=117.4
Q ss_pred ceeeeecCCCccccccCCCCCCCceEEEEecCCCCccccc----ccccCceEEEcCCCCcccccc-cccCCCCCcEEecC
Q 003936 22 RLLKFCGSKNKCMVHSLEGVPFTELRYFEWHQFPLKTLNI----LHWENLVSLKMPGSKVTQLWD-DVQNLVSLKRIDLK 96 (785)
Q Consensus 22 r~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~----~~l~~L~~L~L~~~~i~~l~~-~~~~l~~L~~L~Ls 96 (785)
+.+++++|.+ ..+|..+. ..+++|++++|.++.++. ..+++|++|++++|.++.++. .|..+++|++|+|+
T Consensus 14 ~~l~~s~n~l---~~iP~~~~-~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKL---NKIPEHIP-QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCC---SSCCSCCC-TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCc---ccCccCCC-CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 5788888877 56776554 567899999999988743 578899999999999988765 58889999999999
Q ss_pred CCccccCCCC-CccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCc
Q 003936 97 YSKLLTKLPD-LSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCS 169 (785)
Q Consensus 97 ~n~~~~~~~~-l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~ 169 (785)
+|.+....+. +..+++|++|+|++|.+.+..|..+..+++|++|+|++|...+..|..+ .+++|++|++++|+
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 9987665553 8889999999999998777778888999999999999976666657667 78899999998875
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.48 E-value=4.1e-14 Score=164.68 Aligned_cols=137 Identities=22% Similarity=0.358 Sum_probs=109.4
Q ss_pred cCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccccccCCC
Q 003936 471 SLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPESLNQLS 550 (785)
Q Consensus 471 ~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 550 (785)
..|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++|.++.+|..++.+++|++|+|++|.|+.+|..++.++
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 44666777799999999999977 67777778999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEcccCCCCCCCCcCcCCCCCCEEeCCCCCCCC-Ccccc--------------ccCCCCCCcccccccc
Q 003936 551 SLVSLKLSNNNLERIPERLDPLSSLKYLDLFENNLDR-IPEYL--------------RSFPTSIPSEFTSLRL 608 (785)
Q Consensus 551 ~L~~L~L~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~-lp~~~--------------~~~~~~ip~~l~~l~~ 608 (785)
+|+.|+|++|.|+.+|..+..+++|+.|+|++|+|+. +|..+ ..+.+.+|..+..+++
T Consensus 294 ~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l 366 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEI 366 (727)
T ss_dssp TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------
T ss_pred CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeEe
Confidence 9999999999999999999999999999999999874 44332 2356788888887654
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=2.4e-14 Score=136.03 Aligned_cols=105 Identities=23% Similarity=0.292 Sum_probs=79.6
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCccc-CCCCCCcEEEccCCccccccc--cccCCCCCCEEE
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESL-GQLSSLEWLVLSDNNLQIIPE--SLNQLSSLVSLK 556 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~ 556 (785)
++|++|++++|.+.+. ..+..+++|+.|++++|.++.+|..+ ..+++|++|++++|.++.+|. .+..+++|+.|+
T Consensus 42 ~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 42 DQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp TCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEE
T ss_pred CCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEE
Confidence 4677777777776654 45677778888888888888776444 778888888888888877776 677888888888
Q ss_pred cccCCCCCCCCc----CcCCCCCCEEeCCCCCCC
Q 003936 557 LSNNNLERIPER----LDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 557 L~~n~l~~lp~~----l~~l~~L~~L~l~~n~l~ 586 (785)
+++|.++.+|.. +..+++|+.||+++|++.
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888877774 777888888888887644
No 123
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.47 E-value=1.5e-13 Score=132.50 Aligned_cols=107 Identities=25% Similarity=0.328 Sum_probs=96.0
Q ss_pred CCCCEEEeeCCcCcccCCC-ccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCccccccc-cccCCCCCCEEE
Q 003936 480 KSLTSLEIIDCKNFMRLPD-EIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLK 556 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~ 556 (785)
.+|++|++++|.+.+..+. .++.+++|++|+|++|.++.+ |..|..+++|++|+|++|+++.++. .+..+++|+.|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 5889999999998776664 588999999999999999988 7789999999999999999999764 589999999999
Q ss_pred cccCCCCCC-CCcCcCCCCCCEEeCCCCCCC
Q 003936 557 LSNNNLERI-PERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 557 L~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~ 586 (785)
|++|+++++ |..+..+++|++|++++|+++
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 999999985 788999999999999999865
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=2.1e-14 Score=132.38 Aligned_cols=82 Identities=27% Similarity=0.385 Sum_probs=40.3
Q ss_pred cccccccceEEecCeeccc-cCcccCCCCCCcEEEccCCcccccc--ccccCCCCCCEEEcccCCCCCCCC----cCcCC
Q 003936 500 IGNLEYLKVLTIKGTAIRE-VPESLGQLSSLEWLVLSDNNLQIIP--ESLNQLSSLVSLKLSNNNLERIPE----RLDPL 572 (785)
Q Consensus 500 ~~~l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~n~l~~lp~----~l~~l 572 (785)
+..+++|+.|++++|.++. +|..+..+++|++|++++|.++++| ..++.+++|+.|++++|+++.+|. .+..+
T Consensus 60 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 139 (149)
T 2je0_A 60 LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLL 139 (149)
T ss_dssp CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHC
T ss_pred hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHC
Confidence 3344444444444444444 3444444555555555555555433 445555555555555555555443 34455
Q ss_pred CCCCEEeCC
Q 003936 573 SSLKYLDLF 581 (785)
Q Consensus 573 ~~L~~L~l~ 581 (785)
++|+.|+++
T Consensus 140 ~~L~~L~l~ 148 (149)
T 2je0_A 140 PQLTYLDGY 148 (149)
T ss_dssp TTCCEETTB
T ss_pred CCcccccCC
Confidence 555555544
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.45 E-value=3.3e-14 Score=131.02 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=111.0
Q ss_pred CCCCCcEEEeccccCC-CcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEE
Q 003936 408 MFKSLTSLEIIDCKKL-ERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLE 486 (785)
Q Consensus 408 ~l~~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~ 486 (785)
..++|+.|++++|.+. +.+|..+..+++|+.|++++|.++.+ ..+.. +++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~-----------------------l~~L~~L~ 70 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPK-----------------------LNKLKKLE 70 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCC-----------------------CTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhc-----------------------CCCCCEEE
Confidence 3478999999999987 68888889999999999999988876 33333 38999999
Q ss_pred eeCCcCcccCCCccccccccceEEecCeeccccC--cccCCCCCCcEEEccCCccccccc----cccCCCCCCEEEccc
Q 003936 487 IIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP--ESLGQLSSLEWLVLSDNNLQIIPE----SLNQLSSLVSLKLSN 559 (785)
Q Consensus 487 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp--~~~~~l~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~L~~ 559 (785)
+++|.+.+.+|..+..+++|++|++++|.++.+| ..+..+++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus 71 Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 71 LSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999998888888888999999999999999875 789999999999999999999876 688999999998864
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=8.4e-14 Score=162.06 Aligned_cols=152 Identities=24% Similarity=0.228 Sum_probs=104.2
Q ss_pred CCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceec
Q 003936 298 RLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCN 377 (785)
Q Consensus 298 ~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~ 377 (785)
..+..+..++.|+.|+|++|.+..+|..+..+++|++|+|++|.+. .+|..+..+++|+.|+|++|.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~------------ 281 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR------------ 281 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC------------
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc------------
Confidence 3455677788888888888888888877778888888888888766 777778888888888888874
Q ss_pred cCCCCCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCcccc-ccChhhhhh
Q 003936 378 IDGSGIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIR-EVPKSLAQL 456 (785)
Q Consensus 378 l~~~~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~-~lp~~~~~l 456 (785)
+..+|..++.+++|+.|+|++|.+ +.+|..|+.+++|+.|+|++|.++ .+|..+...
T Consensus 282 ---------------------l~~lp~~~~~l~~L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 282 ---------------------LTSLPAELGSCFQLKYFYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp ---------------------CSSCCSSGGGGTTCSEEECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred ---------------------CCccChhhcCCCCCCEEECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 345667778888888888888865 467877888888888888888888 445555444
Q ss_pred h--hcccccccCCCCccCCccccCCCCCCEEEeeCC
Q 003936 457 A--LSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDC 490 (785)
Q Consensus 457 ~--L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~ 490 (785)
. ...+++.+|...+.+| ..|+.|+++.|
T Consensus 340 ~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n 369 (727)
T 4b8c_D 340 SVTGLIFYLRDNRPEIPLP------HERRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred chhhhHHhhccCcccCcCc------cccceeEeecc
Confidence 3 3456778887777776 45667777766
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.44 E-value=4.2e-13 Score=129.25 Aligned_cols=106 Identities=28% Similarity=0.425 Sum_probs=89.8
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCccccccc-cccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L 557 (785)
++|++|++++|.+. .+|..+.++++|+.|++++|.++.++ ..|.++++|++|+|++|+++.++. .|..+++|+.|+|
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 67888999988876 56778888999999999999998885 568889999999999999988764 6888999999999
Q ss_pred ccCCCCCCCC-cCcCCCCCCEEeCCCCCCC
Q 003936 558 SNNNLERIPE-RLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 558 ~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~ 586 (785)
++|+++.+|. .+..+++|+.|++++|++.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 9999998866 4788899999999998754
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.42 E-value=7.5e-13 Score=125.83 Aligned_cols=109 Identities=29% Similarity=0.420 Sum_probs=96.9
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc-ccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE-SLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L 557 (785)
++|+.|++++|++.+..+..+..+++|++|++++|.++.+|. .+..+++|++|++++|+++.+|.. +..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 689999999999887777778999999999999999999865 468999999999999999998764 789999999999
Q ss_pred ccCCCCCCCCc-CcCCCCCCEEeCCCCCCCCC
Q 003936 558 SNNNLERIPER-LDPLSSLKYLDLFENNLDRI 588 (785)
Q Consensus 558 ~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~~l 588 (785)
++|+++.+|.. +..+++|++|++++|++...
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 99999998765 57899999999999996643
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.40 E-value=7.8e-13 Score=127.39 Aligned_cols=123 Identities=20% Similarity=0.176 Sum_probs=95.8
Q ss_pred EEEEecCCCCcccccccccCceEEEcCCCCccccccc--ccCCCCCcEEecCCCccccCCC-CCccccccceeccccccC
Q 003936 47 RYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDD--VQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSS 123 (785)
Q Consensus 47 ~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~~~--~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~ 123 (785)
++++++++.++.+|..-..+|++|++++|.++.++.. +..+++|++|+|++|.+....| .+..+++|++|+|++|.+
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 5778888888888873334888888888888877653 7888888888888888776666 578888888888888887
Q ss_pred ccccccccccCCcccEEecCCCCCCCcCCCcc-ccccccEEeccCCc
Q 003936 124 LTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI-HSKYLKRLVLRGCS 169 (785)
Q Consensus 124 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~-~l~~L~~L~ls~~~ 169 (785)
.+..+..++.+++|++|++++|...+..|..+ .+++|++|++++|.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 77767778888888888888877666667666 78888888888875
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.40 E-value=1.2e-12 Score=125.97 Aligned_cols=122 Identities=20% Similarity=0.178 Sum_probs=99.8
Q ss_pred EEEEecCCCCcccccccccCceEEEcCCCCcccccccccCCCCCcEEecCCCccccCCC-CCccccccceeccccccCcc
Q 003936 47 RYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDDVQNLVSLKRIDLKYSKLLTKLP-DLSLAQNLEILDLGYCSSLT 125 (785)
Q Consensus 47 ~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~~~~~~l~~L~~L~Ls~n~~~~~~~-~l~~l~~L~~L~Ls~n~~~~ 125 (785)
++++++++.++.+|..-.++|++|++++|.++.+|..+..+++|++|+|++|.+....+ .|..+++|++|+|++|.+..
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 56888888888888844578999999999999888888899999999999998766655 48889999999999998777
Q ss_pred ccccccccCCcccEEecCCCCCCCcCCCc-c-ccccccEEeccCCc
Q 003936 126 ETHSSIQYLNKLEVLDLDRCKSLTSLPTS-I-HSKYLKRLVLRGCS 169 (785)
Q Consensus 126 ~~~~~l~~l~~L~~L~L~~~~~~~~~p~~-~-~l~~L~~L~ls~~~ 169 (785)
..+..|..+++|++|+|++|.. +.+|.. + .+++|+.|++++|+
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSC
T ss_pred eCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCC
Confidence 7777889999999999999654 455553 4 78889999998874
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=3.3e-15 Score=145.05 Aligned_cols=147 Identities=24% Similarity=0.255 Sum_probs=102.9
Q ss_pred cCCCCCcEEEeccccCCCcCCc------ccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCC
Q 003936 407 CMFKSLTSLEIIDCKKLERLPD------ELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSK 480 (785)
Q Consensus 407 ~~l~~L~~L~l~~~~~~~~~p~------~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~ 480 (785)
.....++.++++++.+.+..|. .+..+++|++|++++|.++.+| .+..+ +
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l-----------------------~ 70 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGM-----------------------E 70 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHH-----------------------T
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccC-----------------------C
Confidence 3445666666666666555554 6677777777777777777766 55555 7
Q ss_pred CCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcccCCCCCCcEEEccCCccccccc--cccCCCCCCEEEcc
Q 003936 481 SLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPESLGQLSSLEWLVLSDNNLQIIPE--SLNQLSSLVSLKLS 558 (785)
Q Consensus 481 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~L~ 558 (785)
+|++|++++|.+. .+|..+..+++|+.|++++|.++.+| .+..+++|++|++++|.++.++. .+..+++|+.|+++
T Consensus 71 ~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 71 NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEEC
T ss_pred CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEec
Confidence 7777777777765 45666666777888888888777776 46777788888888888777654 57777888888888
Q ss_pred cCCCCCC-CCc----------CcCCCCCCEEe
Q 003936 559 NNNLERI-PER----------LDPLSSLKYLD 579 (785)
Q Consensus 559 ~n~l~~l-p~~----------l~~l~~L~~L~ 579 (785)
+|.++.. |.. +..+++|+.||
T Consensus 149 ~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp SCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 8877653 332 56677777776
No 132
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.36 E-value=1.2e-12 Score=137.86 Aligned_cols=98 Identities=12% Similarity=0.146 Sum_probs=47.5
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCc-EEEccCCcccccc-ccccCCCCCCEEE
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLE-WLVLSDNNLQIIP-ESLNQLSSLVSLK 556 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~-~L~Ls~n~l~~lp-~~l~~l~~L~~L~ 556 (785)
++|+.+++++|++....+..|.++.+|+.+++.+| ++.| +.+|.++++|+ .+++.+ +++.|+ .+|.++++|+.++
T Consensus 226 ~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~ 303 (329)
T 3sb4_A 226 PNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVL 303 (329)
T ss_dssp TTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEE
T ss_pred CCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEE
Confidence 45555555555444444444555555555555554 4444 23445555555 555554 444443 3345555555555
Q ss_pred cccCCCCCCCC-cCcCCCCCCEEe
Q 003936 557 LSNNNLERIPE-RLDPLSSLKYLD 579 (785)
Q Consensus 557 L~~n~l~~lp~-~l~~l~~L~~L~ 579 (785)
+++|+++.|++ .+.++++|+.++
T Consensus 304 l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 304 ATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECSSCCCEECTTTTCTTCCCCEEE
T ss_pred eCCCccCccchhhhcCCcchhhhc
Confidence 55555555432 344455555443
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.35 E-value=4.6e-13 Score=127.15 Aligned_cols=134 Identities=14% Similarity=0.161 Sum_probs=108.6
Q ss_pred ccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEE
Q 003936 406 LCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSL 485 (785)
Q Consensus 406 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L 485 (785)
+..+++|+.|++++|.+.. +|......++|+.|++++|.++.+ ..+ ..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~-~~l-----------------------~~l~~L~~L 69 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL-DGF-----------------------PLLRRLKTL 69 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE-CCC-----------------------CCCSSCCEE
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc-ccc-----------------------ccCCCCCEE
Confidence 4567888999999987664 454333334888888888888765 222 334899999
Q ss_pred EeeCCcCcccCCCccccccccceEEecCeeccccCc--ccCCCCCCcEEEccCCcccccccc----ccCCCCCCEEEccc
Q 003936 486 EIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE--SLGQLSSLEWLVLSDNNLQIIPES----LNQLSSLVSLKLSN 559 (785)
Q Consensus 486 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~Ls~n~l~~lp~~----l~~l~~L~~L~L~~ 559 (785)
++++|.+.+..+..+..+++|+.|++++|.++.+|. .+..+++|+.|++++|.++.+|.. +..+++|+.|++++
T Consensus 70 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp ECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEE
T ss_pred ECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCc
Confidence 999999887655666899999999999999999887 789999999999999999998875 89999999999999
Q ss_pred CCCCC
Q 003936 560 NNLER 564 (785)
Q Consensus 560 n~l~~ 564 (785)
|...+
T Consensus 150 n~~~~ 154 (176)
T 1a9n_A 150 VKLKE 154 (176)
T ss_dssp CCHHH
T ss_pred CCHHH
Confidence 98764
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.32 E-value=7.2e-13 Score=139.67 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=78.4
Q ss_pred cccccceEEecCeeccccC-cccCCCCCCcEEEccCCcccccc-ccccCCCCCC-EEEcccCCCCCC-CCcCcCCCCCCE
Q 003936 502 NLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSLV-SLKLSNNNLERI-PERLDPLSSLKY 577 (785)
Q Consensus 502 ~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~-~L~L~~n~l~~l-p~~l~~l~~L~~ 577 (785)
.+++|+.+++++|.++.+| .+|.++++|+.|+|.+| ++.|+ .+|.++++|+ .+++.+ +++.| +..+.++++|+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 3789999999999999996 57999999999999998 88887 4599999999 999999 88888 467899999999
Q ss_pred EeCCCCCCCCCccc
Q 003936 578 LDLFENNLDRIPEY 591 (785)
Q Consensus 578 L~l~~n~l~~lp~~ 591 (785)
|++++|.++.|++.
T Consensus 302 l~l~~n~i~~I~~~ 315 (329)
T 3sb4_A 302 VLATGDKITTLGDE 315 (329)
T ss_dssp EEECSSCCCEECTT
T ss_pred EEeCCCccCccchh
Confidence 99999999988754
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.31 E-value=3.8e-14 Score=137.51 Aligned_cols=136 Identities=24% Similarity=0.266 Sum_probs=105.6
Q ss_pred CccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhcccccccCCCCccCCccccC
Q 003936 399 LESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYV 478 (785)
Q Consensus 399 l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~ 478 (785)
++.+|..+..+++|+.|++++|.+.+ +| .+..+++|+.|++++|.++.+|..+..+
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~---------------------- 92 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVA---------------------- 92 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHH----------------------
T ss_pred HhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcC----------------------
Confidence 34455567777888888888887655 56 6777888888888888888888766665
Q ss_pred CCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCc--ccCCCCCCcEEEccCCccccc-cc----------c
Q 003936 479 SKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPE--SLGQLSSLEWLVLSDNNLQII-PE----------S 545 (785)
Q Consensus 479 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~--~~~~l~~L~~L~Ls~n~l~~l-p~----------~ 545 (785)
++|++|++++|++.+ +| .+..+++|+.|++++|.++.++. .+..+++|++|++++|.+... |. .
T Consensus 93 -~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~ 169 (198)
T 1ds9_A 93 -DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV 169 (198)
T ss_dssp -HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHH
T ss_pred -CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHH
Confidence 788888888887765 34 57788899999999999988754 688899999999999998764 32 2
Q ss_pred ccCCCCCCEEEcccCCCC
Q 003936 546 LNQLSSLVSLKLSNNNLE 563 (785)
Q Consensus 546 l~~l~~L~~L~L~~n~l~ 563 (785)
+..+++|+.|+ +|.++
T Consensus 170 ~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 170 VKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHCSSCSEEC--CGGGT
T ss_pred HHhCCCcEEEC--CcccC
Confidence 78899999987 55544
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=2.8e-11 Score=114.85 Aligned_cols=123 Identities=17% Similarity=0.167 Sum_probs=88.5
Q ss_pred eEEEEecCCCCcccccccccCceEEEcCCCCccccccc-ccCCCCCcEEecCCCccccCCCC-CccccccceeccccccC
Q 003936 46 LRYFEWHQFPLKTLNILHWENLVSLKMPGSKVTQLWDD-VQNLVSLKRIDLKYSKLLTKLPD-LSLAQNLEILDLGYCSS 123 (785)
Q Consensus 46 L~~L~l~~~~l~~lp~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~n~~~~~~~~-l~~l~~L~~L~Ls~n~~ 123 (785)
.+.++++++.+..+|....++|++|++++|+++.++.. +..+++|++|++++|.+....+. +..+++|++|++++|.+
T Consensus 9 ~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 35677777777777774446788888888888777654 57788888888888876544443 67888888888888876
Q ss_pred ccccccccccCCcccEEecCCCCCCCcCCCcc--ccccccEEeccCCc
Q 003936 124 LTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI--HSKYLKRLVLRGCS 169 (785)
Q Consensus 124 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~--~l~~L~~L~ls~~~ 169 (785)
.+..+..++.+++|++|++++|.. +.+|... .+++|++|++++|+
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCC
Confidence 655555677888888888888644 4555543 57888888888874
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.24 E-value=3.7e-11 Score=113.36 Aligned_cols=106 Identities=26% Similarity=0.406 Sum_probs=89.7
Q ss_pred CCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEccc
Q 003936 482 LTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKLSN 559 (785)
Q Consensus 482 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~ 559 (785)
-+.++++++.+ +.+|..+. ++|+.|+|++|.++.+ |..|..+++|++|+|++|+++.+|.. |..+++|+.|+|++
T Consensus 14 ~~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 36788888876 45666553 7899999999999988 66789999999999999999998865 68999999999999
Q ss_pred CCCCCCCCc-CcCCCCCCEEeCCCCCCCCCcc
Q 003936 560 NNLERIPER-LDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 560 n~l~~lp~~-l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
|+++.+|.. +..+++|++|++++|++...|.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 999998765 8899999999999999876553
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.23 E-value=2.4e-10 Score=122.99 Aligned_cols=222 Identities=9% Similarity=0.163 Sum_probs=141.0
Q ss_pred ccCccccceeeccCcccccCCcc-ccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCCC
Q 003936 303 LGNLQALNRLIIDGTAIRELPEG-LGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDGS 381 (785)
Q Consensus 303 l~~l~~L~~L~L~~n~i~~lp~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~~ 381 (785)
|.++ +|+.+.+..+ ++.++.. |.+ .+|+.+.+.+ .....-...|.++++|+.+++.+|.
T Consensus 132 F~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~---------------- 191 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK---------------- 191 (401)
T ss_dssp TTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC----------------
T ss_pred cccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc----------------
Confidence 4443 5666666554 5555443 444 3577777765 3333334456666777777665542
Q ss_pred CCcccCccccccCCCCCCccCCccccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhccc
Q 003936 382 GIERIPSSVLKLNKCSKLESLPSSLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALSKL 461 (785)
Q Consensus 382 ~i~~lp~~~l~l~~~~~l~~l~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~~L 461 (785)
+..++.......+|+.+.+.++ +...-..+|.++++|+.+++..+ ++.++...+.
T Consensus 192 -----------------l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~------ 246 (401)
T 4fdw_A 192 -----------------ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFR------ 246 (401)
T ss_dssp -----------------CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTT------
T ss_pred -----------------ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccc------
Confidence 2223322223466777777643 33334456777777777777653 4444432221
Q ss_pred ccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecc-----cc-CcccCCCCCCcEEEcc
Q 003936 462 KLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIR-----EV-PESLGQLSSLEWLVLS 535 (785)
Q Consensus 462 ~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~l-p~~~~~l~~L~~L~Ls 535 (785)
. .+|+.+.+.+ .+...-..+|.++++|+.+++.++.+. .+ +.+|.++++|+.++|.
T Consensus 247 ----------------~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 247 ----------------E-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp ----------------T-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred ----------------c-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence 1 5677777743 344444567788888888888877665 45 4678889999999998
Q ss_pred CCcccccc-ccccCCCCCCEEEcccCCCCCC-CCcCcCCCCCCEEeCCCCCCCCCcc
Q 003936 536 DNNLQIIP-ESLNQLSSLVSLKLSNNNLERI-PERLDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 536 ~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
++++.|+ .+|.++++|+.++|..+ ++.| +.++.++ +|+.+++.+|.+..+++
T Consensus 309 -~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 309 -ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp -TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred -CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 4587776 45888899999999554 7777 4567888 99999999988766654
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.20 E-value=7e-11 Score=111.09 Aligned_cols=106 Identities=28% Similarity=0.412 Sum_probs=88.5
Q ss_pred CCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEcc
Q 003936 481 SLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKLS 558 (785)
Q Consensus 481 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~ 558 (785)
+.+.++++++.+.. +|..+ .++|+.|+|++|.++.+ |..|..+++|++|+|++|+++.+|.. |..+++|+.|+|+
T Consensus 10 ~~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 35678888887654 55544 37889999999999988 66789999999999999999998765 6899999999999
Q ss_pred cCCCCCCCC-cCcCCCCCCEEeCCCCCCCCCc
Q 003936 559 NNNLERIPE-RLDPLSSLKYLDLFENNLDRIP 589 (785)
Q Consensus 559 ~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~lp 589 (785)
+|+++.+|. .+..+++|++|++++|+++..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999999866 4889999999999999877544
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.19 E-value=3.3e-11 Score=113.69 Aligned_cols=90 Identities=23% Similarity=0.309 Sum_probs=82.0
Q ss_pred CCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccCcc-cCCCCCCcEEEccCCcccccccc-ccCCCCCCEEEc
Q 003936 480 KSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVPES-LGQLSSLEWLVLSDNNLQIIPES-LNQLSSLVSLKL 557 (785)
Q Consensus 480 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L 557 (785)
++|++|++++|.+.+..|..+.++++|+.|+|++|.++.+|.. |..+++|++|+|++|+++.+|.. +..+++|+.|+|
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 7899999999999998899999999999999999999999765 68999999999999999998875 899999999999
Q ss_pred ccCCCCCCCCcC
Q 003936 558 SNNNLERIPERL 569 (785)
Q Consensus 558 ~~n~l~~lp~~l 569 (785)
++|.+...+..+
T Consensus 113 ~~N~~~c~~~~~ 124 (174)
T 2r9u_A 113 YNNPWDCECRDI 124 (174)
T ss_dssp CSSCBCTTBGGG
T ss_pred CCCCcccccccH
Confidence 999998766533
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.18 E-value=4e-11 Score=112.78 Aligned_cols=106 Identities=24% Similarity=0.343 Sum_probs=90.9
Q ss_pred chhhhccCccccccChhhhhhhhcccccccCCCCccCCccccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCee
Q 003936 436 LEELRVEGTGIREVPKSLAQLALSKLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTA 515 (785)
Q Consensus 436 L~~L~L~~n~i~~lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 515 (785)
.+.+++++|.++.+|..+. ++|++|++++|.+.+..|..+.++++|++|+|++|.
T Consensus 11 ~~~l~~s~n~l~~ip~~~~-------------------------~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 65 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP-------------------------TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ 65 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC-------------------------TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred CCEEEeCCCCcCccCccCC-------------------------CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC
Confidence 3556777777777664321 789999999999999889999999999999999999
Q ss_pred ccccCc-ccCCCCCCcEEEccCCccccccc-cccCCCCCCEEEcccCCCCCCC
Q 003936 516 IREVPE-SLGQLSSLEWLVLSDNNLQIIPE-SLNQLSSLVSLKLSNNNLERIP 566 (785)
Q Consensus 516 l~~lp~-~~~~l~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~lp 566 (785)
++.+|. .|..+++|++|+|++|+++.+|. .+..+++|+.|+|++|.++..+
T Consensus 66 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 66 LTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred cCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999965 46899999999999999999886 4899999999999999987544
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.14 E-value=1e-09 Score=118.08 Aligned_cols=199 Identities=15% Similarity=0.140 Sum_probs=117.0
Q ss_pred ccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccccCCCCCCEEEeeCCCCCCCCCCCceeccCC
Q 003936 301 DELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNCSNLKGFPEIPFCNIDG 380 (785)
Q Consensus 301 ~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~l~~l~l~~ 380 (785)
..|.+|++|+.+++.+|.++.++...-...+|+.+.+.++ ....-...|.++++|+.+++.++ ++
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~------------ 238 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VS------------ 238 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CC------------
T ss_pred HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC--cc------------
Confidence 4577788888888888888877765333577777777643 33333445556666666666542 11
Q ss_pred CCCcccCccccccCCCCCCccCCc-cccCCCCCcEEEeccccCCCcCCcccCCcccchhhhccCccccccChhhhhhhhc
Q 003936 381 SGIERIPSSVLKLNKCSKLESLPS-SLCMFKSLTSLEIIDCKKLERLPDELGNLEALEELRVEGTGIREVPKSLAQLALS 459 (785)
Q Consensus 381 ~~i~~lp~~~l~l~~~~~l~~l~~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~L~ 459 (785)
.++. .|.. .+|+.+.+.++ +...-..+|.++
T Consensus 239 --------------------~I~~~aF~~-~~L~~i~lp~~-i~~I~~~aF~~c-------------------------- 270 (401)
T 4fdw_A 239 --------------------TIGQEAFRE-SGITTVKLPNG-VTNIASRAFYYC-------------------------- 270 (401)
T ss_dssp --------------------EECTTTTTT-CCCSEEEEETT-CCEECTTTTTTC--------------------------
T ss_pred --------------------Ccccccccc-CCccEEEeCCC-ccEEChhHhhCC--------------------------
Confidence 1111 1222 45555555322 222223334444
Q ss_pred ccccccCCCCccCCccccCCCCCCEEEeeCCcCc-----ccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEE
Q 003936 460 KLKLKKCSSFESLPSRLYVSKSLTSLEIIDCKNF-----MRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLV 533 (785)
Q Consensus 460 ~L~l~~~~~~~~lp~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~ 533 (785)
++|+.+.+.++... ...+..|.++++|+.+.+.+ .++.+ ..+|.++++|+.++
T Consensus 271 --------------------~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 271 --------------------PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp --------------------TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEE
T ss_pred --------------------CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEE
Confidence 44444444444332 23344566677777777763 36666 45677788888888
Q ss_pred ccCCcccccc-ccccCCCCCCEEEcccCCCCCCC-CcCcCCC-CCCEEeCCCCCC
Q 003936 534 LSDNNLQIIP-ESLNQLSSLVSLKLSNNNLERIP-ERLDPLS-SLKYLDLFENNL 585 (785)
Q Consensus 534 Ls~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp-~~l~~l~-~L~~L~l~~n~l 585 (785)
|..+ ++.|+ .+|.++ +|+.+++.+|.+..++ ..+..++ .++.|++..+.+
T Consensus 330 lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 330 IPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred ECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 8544 66665 457777 8888888888777764 3455553 677787776543
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.04 E-value=5.5e-09 Score=112.80 Aligned_cols=96 Identities=17% Similarity=0.211 Sum_probs=46.8
Q ss_pred CCCCCCEEEeeCCcCcccCCCccccccccceEEecCeecccc-CcccCCCCCCcEEEccCCcccccc-ccccCCCCCCEE
Q 003936 478 VSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREV-PESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSLVSL 555 (785)
Q Consensus 478 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L 555 (785)
.+.+|+.+.+.++ +...-..+|.++.+|+.+++..+ ++.| ..+|.++++|+.+++..+ ++.|+ .+|.++++|+.+
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKV 371 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEE
T ss_pred ccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEE
Confidence 3355666655443 22222344555556666555432 4444 344555566666655544 44443 345555556655
Q ss_pred EcccCCCCCCCCcCcCCCCCCE
Q 003936 556 KLSNNNLERIPERLDPLSSLKY 577 (785)
Q Consensus 556 ~L~~n~l~~lp~~l~~l~~L~~ 577 (785)
++..+ ++.+...+.++++|+.
T Consensus 372 ~lp~~-~~~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 372 ELPKR-LEQYRYDFEDTTKFKW 392 (394)
T ss_dssp EEEGG-GGGGGGGBCTTCEEEE
T ss_pred EECCC-CEEhhheecCCCCCcE
Confidence 55432 2333334444444443
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.04 E-value=1.2e-11 Score=131.93 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=105.3
Q ss_pred CCCCcEEEeccccCCCcCCcc----cC-CcccchhhhccCccccc--cChhhhhhhhcccccccCCCCccCCccccCCCC
Q 003936 409 FKSLTSLEIIDCKKLERLPDE----LG-NLEALEELRVEGTGIRE--VPKSLAQLALSKLKLKKCSSFESLPSRLYVSKS 481 (785)
Q Consensus 409 l~~L~~L~l~~~~~~~~~p~~----~~-~l~~L~~L~L~~n~i~~--lp~~~~~l~L~~L~l~~~~~~~~lp~~~~~~~~ 481 (785)
+++|+.|++++|.+....... +. ..++|++|+|++|.++. +......+ ++
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L-----------------------~~ 127 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVF-----------------------LR 127 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHH-----------------------HT
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHH-----------------------Hh
Confidence 467888888888865532222 22 23678888888888763 21112222 46
Q ss_pred CCEEEeeCCcCcccCCCcc-----ccccccceEEecCeeccc-----cCcccCCCCCCcEEEccCCcccc-----ccccc
Q 003936 482 LTSLEIIDCKNFMRLPDEI-----GNLEYLKVLTIKGTAIRE-----VPESLGQLSSLEWLVLSDNNLQI-----IPESL 546 (785)
Q Consensus 482 L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-----lp~~l 546 (785)
|+.|++++|.+.......+ ...++|++|+|++|.++. ++..+...++|++|+|++|.++. ++..+
T Consensus 128 L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L 207 (372)
T 3un9_A 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQL 207 (372)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHG
T ss_pred ccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHH
Confidence 7777787777654322222 235678888888888764 44555677888888888888864 45667
Q ss_pred cCCCCCCEEEcccCCCCC-----CCCcCcCCCCCCEEeCCCCCCCC
Q 003936 547 NQLSSLVSLKLSNNNLER-----IPERLDPLSSLKYLDLFENNLDR 587 (785)
Q Consensus 547 ~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~~ 587 (785)
...++|+.|+|++|.++. ++..+...++|++|+|++|+|+.
T Consensus 208 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 208 DRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp GGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred hcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 777888888888888874 34455567788888888888764
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.01 E-value=7.7e-09 Score=111.62 Aligned_cols=304 Identities=13% Similarity=0.086 Sum_probs=144.3
Q ss_pred eecCHHHHhcccccceeeeecCCCccccccCCCCCC--CceEEEEecCCCCccccc---ccccCceEEEcCCCCccccc-
Q 003936 8 IQINPYTFSKMTELRLLKFCGSKNKCMVHSLEGVPF--TELRYFEWHQFPLKTLNI---LHWENLVSLKMPGSKVTQLW- 81 (785)
Q Consensus 8 ~~i~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~lp~---~~l~~L~~L~L~~~~i~~l~- 81 (785)
..|...||.++++|+.+.+..+ + ..+.+..+. .+|+.+++..+ ++.++. ..+..|+.+.+..+ ++.+.
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~~-i---~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPST-V---REIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCTT-C---CEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred eEhHHHHhhCCCCceEEEeCCC-c---cCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecc
Confidence 4577788888888888888643 3 445554443 67777777543 555555 45566666655543 33332
Q ss_pred ccccCCCCCcEEecCCCccccCCCCCccccccceeccccccCccccccccccCCcccEEecCCCCCCCcCCCcc--cccc
Q 003936 82 DDVQNLVSLKRIDLKYSKLLTKLPDLSLAQNLEILDLGYCSSLTETHSSIQYLNKLEVLDLDRCKSLTSLPTSI--HSKY 159 (785)
Q Consensus 82 ~~~~~l~~L~~L~Ls~n~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~p~~~--~l~~ 159 (785)
..|.....++......... .....|..+++|+.+.+.++. ...-...|..+.+|+.+.+..+ ++.++... .+..
T Consensus 134 ~aF~~~~~~~~~~~~~~~~-i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVTV-IGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECIL 209 (394)
T ss_dssp TTTTTCCCSEEECCTTCCE-ECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTT
T ss_pred eeeecccccccccCccccc-cchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC--ceEeCchhhccccc
Confidence 2244443333332222211 111135666666666665432 2222334556666666666542 33332222 4455
Q ss_pred ccEEeccCCcCCCCCCCcc--ccccccccccccccccccC-cchhccccccceeccccccccccchhhhccccccccccc
Q 003936 160 LKRLVLRGCSNLKNLPKMT--SCHLRSTLPLLGVGIEELP-SSIKCLSNIGELLIYSCKRLENISSSIFKLQFLESIRIH 236 (785)
Q Consensus 160 L~~L~ls~~~~l~~lp~~~--~~~L~~~L~l~~~~i~~lp-~~l~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 236 (785)
|+.+.+..+.. .+.... ...++ .+.+.. .+..+. ..+..+..|+.+.+..+.. ......+..
T Consensus 210 L~~i~~~~~~~--~i~~~~~~~~~l~-~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~---------- 274 (394)
T 4fs7_A 210 LENMEFPNSLY--YLGDFALSKTGVK-NIIIPD-SFTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYN---------- 274 (394)
T ss_dssp CCBCCCCTTCC--EECTTTTTTCCCC-EEEECT-TCCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTT----------
T ss_pred cceeecCCCce--EeehhhcccCCCc-eEEECC-CceecccccccccccceeEEcCCCcc-eeecccccc----------
Confidence 55554433210 000000 01111 111111 111111 1223334444443332211 111111111
Q ss_pred CCCCCccccCCCcccCCCCCccCCcccccccCCCCCCCCCCCccCCCCCcEEecccCCCCCCC-CccccCccccceeecc
Q 003936 237 RCPNLQFLEMPSCNIDGTRSKEQPSSELKLKKCPRPESLPSGQCMFKSLTSLEIIDCPNFERL-PDELGNLQALNRLIID 315 (785)
Q Consensus 237 ~~~~L~~L~l~~n~~~~~~~~~~~~~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~l-p~~l~~l~~L~~L~L~ 315 (785)
|..++.+......+ ....+..+.+|+++.+.+. +..+ ...|.++++|+.+++.
T Consensus 275 -~~~l~~~~~~~~~i-----------------------~~~~F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 275 -CSGLKKVIYGSVIV-----------------------PEKTFYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp -CTTCCEEEECSSEE-----------------------CTTTTTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCC
T ss_pred -ccccceeccCceee-----------------------ccccccccccccccccccc--cceechhhhcCCCCCCEEEeC
Confidence 22222111111100 0112334566777766542 3333 3457788888888886
Q ss_pred CcccccCCc-cccCccccceecccCccCCccccccccCCCCCCEEEeeCC
Q 003936 316 GTAIRELPE-GLGQLALLSKLELKNCSELEYISSSIFKLKSVESIEISNC 364 (785)
Q Consensus 316 ~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 364 (785)
.+ ++.+.. .|.++++|+.+++..+ ....-..+|.++++|+.+++..+
T Consensus 329 ~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 329 YL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred Cc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 43 666654 4778888888888764 33334456777888888887653
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.94 E-value=2.8e-09 Score=113.02 Aligned_cols=106 Identities=23% Similarity=0.210 Sum_probs=84.9
Q ss_pred EEEeeCCcCcccCCCccccccccceEEecC-eeccccC-cccCCCCCCcEEEccCCcccccc-ccccCCCCCCEEEcccC
Q 003936 484 SLEIIDCKNFMRLPDEIGNLEYLKVLTIKG-TAIREVP-ESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSLVSLKLSNN 560 (785)
Q Consensus 484 ~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~n 560 (785)
.++.+++..+..+|. +..+++|+.|+|++ |.++.+| ..|.++++|+.|+|++|+|+++| ..|.++++|+.|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 456666633445777 88888999999986 9999886 57889999999999999999866 46899999999999999
Q ss_pred CCCCCCCcCcCCCCCCEEeCCCCCCCCCcc
Q 003936 561 NLERIPERLDPLSSLKYLDLFENNLDRIPE 590 (785)
Q Consensus 561 ~l~~lp~~l~~l~~L~~L~l~~n~l~~lp~ 590 (785)
+|+.+|..+.....|+.|+|.+|++....+
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHCSCA 120 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred ccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence 999987665444449999999999875543
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.85 E-value=5.2e-09 Score=110.94 Aligned_cols=92 Identities=29% Similarity=0.185 Sum_probs=77.1
Q ss_pred CCccccCCCCCCEEEeeC-CcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCccccccccccCC
Q 003936 472 LPSRLYVSKSLTSLEIID-CKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIPESLNQL 549 (785)
Q Consensus 472 lp~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l 549 (785)
+|. +..+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|.++.++ ..|..+++|++|+|++|+|+.+|......
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 102 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG 102 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCS
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHccc
Confidence 344 44448999999996 8888877788999999999999999999885 57899999999999999999988764443
Q ss_pred CCCCEEEcccCCCCC
Q 003936 550 SSLVSLKLSNNNLER 564 (785)
Q Consensus 550 ~~L~~L~L~~n~l~~ 564 (785)
..|+.|+|.+|.+..
T Consensus 103 ~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 103 LSLQELVLSGNPLHC 117 (347)
T ss_dssp CCCCEEECCSSCCCC
T ss_pred CCceEEEeeCCCccC
Confidence 349999999999874
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.72 E-value=8.2e-10 Score=117.63 Aligned_cols=165 Identities=10% Similarity=0.065 Sum_probs=91.6
Q ss_pred CceEEEEecCCCCccccc--------ccccCceEEEcCCCCcccc--cccccCCCCCcEEecCCCccccCCC-CC-----
Q 003936 44 TELRYFEWHQFPLKTLNI--------LHWENLVSLKMPGSKVTQL--WDDVQNLVSLKRIDLKYSKLLTKLP-DL----- 107 (785)
Q Consensus 44 ~~L~~L~l~~~~l~~lp~--------~~l~~L~~L~L~~~~i~~l--~~~~~~l~~L~~L~Ls~n~~~~~~~-~l----- 107 (785)
+.|+.|++++|.++.... ...++|++|+|++|.++.. ..-...+++|+.|+|++|.+..... .+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 567777777777653222 1235777777777776531 1112345677777777776433211 11
Q ss_pred ccccccceeccccccCcc----ccccccccCCcccEEecCCCCCCC----cCCCcc-ccccccEEeccCCcCCCCCCCcc
Q 003936 108 SLAQNLEILDLGYCSSLT----ETHSSIQYLNKLEVLDLDRCKSLT----SLPTSI-HSKYLKRLVLRGCSNLKNLPKMT 178 (785)
Q Consensus 108 ~~l~~L~~L~Ls~n~~~~----~~~~~l~~l~~L~~L~L~~~~~~~----~~p~~~-~l~~L~~L~ls~~~~l~~lp~~~ 178 (785)
...++|++|+|++|.+.. .++..+..+++|++|+|++|.... .++..+ ..++|++|++++|. ++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~------ 224 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AG------ 224 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CC------
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CC------
Confidence 234667777777776543 234445667777777777765322 122223 44567777776663 11
Q ss_pred ccccccccccccccccccCcchhccccccceeccccccccccchhhhc
Q 003936 179 SCHLRSTLPLLGVGIEELPSSIKCLSNIGELLIYSCKRLENISSSIFK 226 (785)
Q Consensus 179 ~~~L~~~L~l~~~~i~~lp~~l~~l~~L~~L~L~~~~~~~~~~~~l~~ 226 (785)
......+...+...++|++|++++|.+.......+..
T Consensus 225 -----------~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 225 -----------DTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp -----------HHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 0111233344556677888888888776554444443
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.58 E-value=8.4e-09 Score=108.82 Aligned_cols=108 Identities=23% Similarity=0.338 Sum_probs=70.8
Q ss_pred CCCCCEEEeeCCcCcccCCCccc--cccccceEEecC--ee------ccccCccc--CCCCCCcEEEccCCcccc-cccc
Q 003936 479 SKSLTSLEIIDCKNFMRLPDEIG--NLEYLKVLTIKG--TA------IREVPESL--GQLSSLEWLVLSDNNLQI-IPES 545 (785)
Q Consensus 479 ~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~L~~--n~------l~~lp~~~--~~l~~L~~L~Ls~n~l~~-lp~~ 545 (785)
.++|+.|++..|.+.......+. .+++|+.|+|+. +. +..+...+ ..+++|+.|+|++|.+.. .+..
T Consensus 192 ~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~ 271 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271 (362)
T ss_dssp CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHH
T ss_pred CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHH
Confidence 37788888877765443222332 577788887753 11 22222222 357889999998888764 2222
Q ss_pred c---cCCCCCCEEEcccCCCCC-----CCCcCcCCCCCCEEeCCCCCCC
Q 003936 546 L---NQLSSLVSLKLSNNNLER-----IPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 546 l---~~l~~L~~L~L~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
+ ..+++|+.|+|+.|.++. ++..+..+++|+.|++++|.++
T Consensus 272 la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2 357889999999888875 4556667788999999888765
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.53 E-value=3e-06 Score=91.15 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=61.4
Q ss_pred eecCHHHHhccc-ccceeeeecCCCccccccCCCCCC--CceEEEEecCCC---Cccccc---ccccCceEEEcCCCCcc
Q 003936 8 IQINPYTFSKMT-ELRLLKFCGSKNKCMVHSLEGVPF--TELRYFEWHQFP---LKTLNI---LHWENLVSLKMPGSKVT 78 (785)
Q Consensus 8 ~~i~~~~f~~l~-~Lr~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~---l~~lp~---~~l~~L~~L~L~~~~i~ 78 (785)
..|...||++++ .|+.+.+..+ + ..+.+..+. .+|+.+.+..+. ++.+.. ..+.+|+.+.+..+ ++
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-v---t~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~ 126 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-V---TEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT 126 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-C---CEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS
T ss_pred eEcCHhhccCCCCcCEEEEECCC-e---eEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc
Confidence 457788888884 5888888653 2 445454444 778887776653 445554 34556666555443 44
Q ss_pred cccc-cccCCCCCcEEecCCCccccCCC--CCccccccceecccc
Q 003936 79 QLWD-DVQNLVSLKRIDLKYSKLLTKLP--DLSLAQNLEILDLGY 120 (785)
Q Consensus 79 ~l~~-~~~~l~~L~~L~Ls~n~~~~~~~--~l~~l~~L~~L~Ls~ 120 (785)
.+.. .|..+.+|+.+.+..+. ..++ .+..+.+|+.+.+.+
T Consensus 127 ~I~~~aF~~c~~L~~i~lp~~~--~~I~~~~F~~c~~L~~i~~~~ 169 (394)
T 4gt6_A 127 EIDSEAFHHCEELDTVTIPEGV--TSVADGMFSYCYSLHTVTLPD 169 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECCT
T ss_pred eehhhhhhhhccccccccccee--eeecccceecccccccccccc
Confidence 4432 35666666666665442 2222 355666666666654
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.43 E-value=1e-05 Score=86.94 Aligned_cols=106 Identities=14% Similarity=0.212 Sum_probs=74.4
Q ss_pred cccCCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCcccccc-ccccCCCCC
Q 003936 475 RLYVSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSL 552 (785)
Q Consensus 475 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L 552 (785)
.|..+.+|+.+.+.+... ......+.++++|+.+.+. +.++.++ .+|.++.+|+.++|..+ ++.|. .+|.++++|
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L 336 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQL 336 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred eeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCC
Confidence 455667788887765432 2334567778888888885 4455663 56788888888888754 66665 458888888
Q ss_pred CEEEcccCCCCCCC-CcCcCCCCCCEEeCCCCC
Q 003936 553 VSLKLSNNNLERIP-ERLDPLSSLKYLDLFENN 584 (785)
Q Consensus 553 ~~L~L~~n~l~~lp-~~l~~l~~L~~L~l~~n~ 584 (785)
+.+.|.. .++.|. .++.++++|+.+++.++.
T Consensus 337 ~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 337 ERIAIPS-SVTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CEEEECT-TCCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CEEEECc-ccCEEhHhHhhCCCCCCEEEECCce
Confidence 8888864 477774 457888888888887753
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.39 E-value=1.3e-07 Score=99.68 Aligned_cols=82 Identities=21% Similarity=0.159 Sum_probs=48.6
Q ss_pred cCCCCCcEEecccCCC---------CCCCCccccCccccceeeccCcccccCCccccCccccceecccCccCCccccccc
Q 003936 280 CMFKSLTSLEIIDCPN---------FERLPDELGNLQALNRLIIDGTAIRELPEGLGQLALLSKLELKNCSELEYISSSI 350 (785)
Q Consensus 280 ~~l~~L~~L~l~~~~~---------~~~lp~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~l~~~~~~~~~~~~~ 350 (785)
..+++|++|.+.+... ...++..+..+++|+.|.|+++.-..++. +. +++|++|++..|.+.......+
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHH
Confidence 3477888888765421 11244445667788888887763223443 32 6778888877766544333333
Q ss_pred c--CCCCCCEEEeeC
Q 003936 351 F--KLKSVESIEISN 363 (785)
Q Consensus 351 ~--~l~~L~~L~l~~ 363 (785)
. .+++|+.|+|+.
T Consensus 214 ~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHSBCTTCCEEEEEC
T ss_pred HHccCCCCcEEEEec
Confidence 2 567777777753
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.28 E-value=4.6e-05 Score=81.38 Aligned_cols=101 Identities=18% Similarity=0.158 Sum_probs=63.8
Q ss_pred CCCCCCEEEeeCCcCcccCCCccccccccceEEecCeeccccC-cccCCCCCCcEEEccCCcccccc-ccccCCCCCCEE
Q 003936 478 VSKSLTSLEIIDCKNFMRLPDEIGNLEYLKVLTIKGTAIREVP-ESLGQLSSLEWLVLSDNNLQIIP-ESLNQLSSLVSL 555 (785)
Q Consensus 478 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L 555 (785)
.+..|+.+.+..+ +...-...+.++.+|+.+.+..+ ++.++ ..|.++++|+.+.+.++.++.|+ .+|.++++|+.+
T Consensus 238 ~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 238 GMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred CCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 3456666666543 22233345666677777776543 44443 45677777888888777777765 457777788888
Q ss_pred EcccCCCCCCC-CcCcCCCCCCEEeCC
Q 003936 556 KLSNNNLERIP-ERLDPLSSLKYLDLF 581 (785)
Q Consensus 556 ~L~~n~l~~lp-~~l~~l~~L~~L~l~ 581 (785)
.|..+ ++.|. .++.++++|+.+.+.
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEEC
Confidence 77643 66663 356677777777664
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.16 E-value=3e-07 Score=87.33 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=83.5
Q ss_pred CCCCCEEEeeCC-cCcc----cCCCccccccccceEEecCeeccc-----cCcccCCCCCCcEEEccCCcccc-----cc
Q 003936 479 SKSLTSLEIIDC-KNFM----RLPDEIGNLEYLKVLTIKGTAIRE-----VPESLGQLSSLEWLVLSDNNLQI-----IP 543 (785)
Q Consensus 479 ~~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-----lp 543 (785)
.++|++|++++| .+.. .+...+...++|++|+|++|.++. +...+...++|++|+|++|.+.. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 378999999998 6643 234455667889999999998873 34556667889999999999874 56
Q ss_pred ccccCCCCCCEEEc--ccCCCCC-----CCCcCcCCCCCCEEeCCCCCCC
Q 003936 544 ESLNQLSSLVSLKL--SNNNLER-----IPERLDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 544 ~~l~~l~~L~~L~L--~~n~l~~-----lp~~l~~l~~L~~L~l~~n~l~ 586 (785)
..+...++|+.|+| ++|.+.. +...+...++|++|++++|.+.
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 77888889999999 7898874 4555666788999999998754
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.08 E-value=0.00012 Score=77.97 Aligned_cols=79 Identities=16% Similarity=0.209 Sum_probs=49.9
Q ss_pred CCCCcEEecccCCCCCCCC-ccccCccccceeeccCcccccCCc-cccCccccceecccCccCCccccccccCCCCCCEE
Q 003936 282 FKSLTSLEIIDCPNFERLP-DELGNLQALNRLIIDGTAIRELPE-GLGQLALLSKLELKNCSELEYISSSIFKLKSVESI 359 (785)
Q Consensus 282 l~~L~~L~l~~~~~~~~lp-~~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 359 (785)
+..|+.+.+.. .+..++ ..|.++++|+.+.+.++.++.++. .|.++.+|+.+.+.++ ....-..+|.++.+|+.+
T Consensus 262 ~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i 338 (379)
T 4h09_A 262 CTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTI 338 (379)
T ss_dssp CTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCC
T ss_pred eehhccccccc--cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEE
Confidence 44555555432 122222 347778888888888888887765 4778888888888653 222333456677777777
Q ss_pred EeeC
Q 003936 360 EISN 363 (785)
Q Consensus 360 ~l~~ 363 (785)
.+..
T Consensus 339 ~ip~ 342 (379)
T 4h09_A 339 SYPK 342 (379)
T ss_dssp CCCT
T ss_pred EECC
Confidence 6643
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.97 E-value=9.2e-07 Score=83.90 Aligned_cols=61 Identities=21% Similarity=0.200 Sum_probs=38.3
Q ss_pred ccccceEEecCeeccc-----cCcccCCCCCCcEEEc--cCCcccc-----ccccccCCCCCCEEEcccCCCC
Q 003936 503 LEYLKVLTIKGTAIRE-----VPESLGQLSSLEWLVL--SDNNLQI-----IPESLNQLSSLVSLKLSNNNLE 563 (785)
Q Consensus 503 l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~L--s~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~ 563 (785)
.++|++|+|++|.++. +...+...++|++|+| ++|.+.. +...+...++|+.|+|++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455555555555542 3445566667777777 6677763 4455666677888888777654
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.94 E-value=3.3e-06 Score=77.89 Aligned_cols=87 Identities=13% Similarity=0.197 Sum_probs=53.9
Q ss_pred ccCceEEEcCCCCcccc-cccccCCCCCcEEecCCCccccCC--CCCcc----ccccceecccccc-CccccccccccCC
Q 003936 64 WENLVSLKMPGSKVTQL-WDDVQNLVSLKRIDLKYSKLLTKL--PDLSL----AQNLEILDLGYCS-SLTETHSSIQYLN 135 (785)
Q Consensus 64 l~~L~~L~L~~~~i~~l-~~~~~~l~~L~~L~Ls~n~~~~~~--~~l~~----l~~L~~L~Ls~n~-~~~~~~~~l~~l~ 135 (785)
-.+|++||++++.|+.. -..+..+++|+.|+|++|...+.. ..++. .++|++|+|++|. ++..--..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 44677777777776632 233567788888888888643331 12333 2467788887775 3333334466677
Q ss_pred cccEEecCCCCCCCc
Q 003936 136 KLEVLDLDRCKSLTS 150 (785)
Q Consensus 136 ~L~~L~L~~~~~~~~ 150 (785)
+|++|++++|..++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 777777777765554
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=4.4e-06 Score=83.29 Aligned_cols=58 Identities=26% Similarity=0.303 Sum_probs=31.8
Q ss_pred cccCCCCCCcEEEccCCccccccccccCCC--CCCEEEcccCCCCC-CCC-------cCcCCCCCCEEe
Q 003936 521 ESLGQLSSLEWLVLSDNNLQIIPESLNQLS--SLVSLKLSNNNLER-IPE-------RLDPLSSLKYLD 579 (785)
Q Consensus 521 ~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~--~L~~L~L~~n~l~~-lp~-------~l~~l~~L~~L~ 579 (785)
..+..+++|+.|+|++|+++.+. .+..+. +|+.|+|++|.+.. +|. .+..+++|+.||
T Consensus 190 ~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 190 SIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp THHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 33445566666666666665542 122222 66667777766653 332 245567777765
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.85 E-value=5.1e-06 Score=82.82 Aligned_cols=65 Identities=26% Similarity=0.334 Sum_probs=30.2
Q ss_pred CCCCCcEEecCCCcccc--CCCC-CccccccceeccccccCccccccccccCC--cccEEecCCCCCCCcCC
Q 003936 86 NLVSLKRIDLKYSKLLT--KLPD-LSLAQNLEILDLGYCSSLTETHSSIQYLN--KLEVLDLDRCKSLTSLP 152 (785)
Q Consensus 86 ~l~~L~~L~Ls~n~~~~--~~~~-l~~l~~L~~L~Ls~n~~~~~~~~~l~~l~--~L~~L~L~~~~~~~~~p 152 (785)
++++|+.|+|++|++.. .+|+ +..+++|++|+|++|.+.+. ..+..++ +|++|+|++|+....+|
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 45555555555555433 1222 33555555555555553332 1223233 55555555555444443
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.83 E-value=4.2e-06 Score=77.23 Aligned_cols=95 Identities=18% Similarity=0.241 Sum_probs=68.5
Q ss_pred cccccccCCCCCcEEecCCCccccC-CCCCccccccceeccccccCc-cccccccccC----CcccEEecCCCCCCCc--
Q 003936 79 QLWDDVQNLVSLKRIDLKYSKLLTK-LPDLSLAQNLEILDLGYCSSL-TETHSSIQYL----NKLEVLDLDRCKSLTS-- 150 (785)
Q Consensus 79 ~l~~~~~~l~~L~~L~Ls~n~~~~~-~~~l~~l~~L~~L~Ls~n~~~-~~~~~~l~~l----~~L~~L~L~~~~~~~~-- 150 (785)
.+|.....-.+|+.||+++|.+... +..+..+++|++|+|++|..+ ..--..+..+ ++|++|+|++|..++.
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred cCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 4455443346899999999975333 335789999999999999743 3334445554 4799999999987774
Q ss_pred CCCccccccccEEeccCCcCCCC
Q 003936 151 LPTSIHSKYLKRLVLRGCSNLKN 173 (785)
Q Consensus 151 ~p~~~~l~~L~~L~ls~~~~l~~ 173 (785)
+.....+++|++|++++|+.++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 22112789999999999987664
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.54 E-value=0.00051 Score=64.51 Aligned_cols=105 Identities=20% Similarity=0.177 Sum_probs=63.8
Q ss_pred CCCCEEEeeCC-cCcc----cCCCccccccccceEEecCeeccc-----cCcccCCCCCCcEEEccCCcccc-----ccc
Q 003936 480 KSLTSLEIIDC-KNFM----RLPDEIGNLEYLKVLTIKGTAIRE-----VPESLGQLSSLEWLVLSDNNLQI-----IPE 544 (785)
Q Consensus 480 ~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~L~~n~l~~-----lp~~~~~l~~L~~L~Ls~n~l~~-----lp~ 544 (785)
+.|+.|+|+++ .+.. .+-+.+..-..|+.|+|++|.++. +...+..-+.|++|+|++|.|.. +-+
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 67888888875 4432 233344555677777777777762 23344455677777777777763 445
Q ss_pred cccCCCCCCEEEcccC---CCCC-----CCCcCcCCCCCCEEeCCCCC
Q 003936 545 SLNQLSSLVSLKLSNN---NLER-----IPERLDPLSSLKYLDLFENN 584 (785)
Q Consensus 545 ~l~~l~~L~~L~L~~n---~l~~-----lp~~l~~l~~L~~L~l~~n~ 584 (785)
.+..-+.|+.|+|++| .+.. +.+.+..-+.|+.|+++.|.
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 6666667777777754 3331 33344455667777776553
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.32 E-value=0.0057 Score=53.51 Aligned_cols=54 Identities=26% Similarity=0.358 Sum_probs=36.3
Q ss_pred EEEccCCccc--cccccccCCCCCCEEEcccCCCCCCCCc-CcCCCCCCEEeCCCCCCC
Q 003936 531 WLVLSDNNLQ--IIPESLNQLSSLVSLKLSNNNLERIPER-LDPLSSLKYLDLFENNLD 586 (785)
Q Consensus 531 ~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~l~~lp~~-l~~l~~L~~L~l~~n~l~ 586 (785)
.++.++++++ .+|..+. ++|+.|+|++|+|+.+|.. +..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666666 6665432 3577777777777777544 566777888888887643
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.12 E-value=0.0066 Score=53.11 Aligned_cols=52 Identities=17% Similarity=0.174 Sum_probs=28.2
Q ss_pred EEEecCCCCc--ccccccccCceEEEcCCCCccccccc-ccCCCCCcEEecCCCc
Q 003936 48 YFEWHQFPLK--TLNILHWENLVSLKMPGSKVTQLWDD-VQNLVSLKRIDLKYSK 99 (785)
Q Consensus 48 ~L~l~~~~l~--~lp~~~l~~L~~L~L~~~~i~~l~~~-~~~l~~L~~L~Ls~n~ 99 (785)
.++.+++.++ .+|..-..+|++|+|++|+|+.++.+ |..+++|++|+|++|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4455555555 55543344555666666666655443 4555555555555554
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.90 E-value=0.0029 Score=59.38 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=68.1
Q ss_pred cccccccceEEecCe-ecc-----ccCcccCCCCCCcEEEccCCcccc-----ccccccCCCCCCEEEcccCCCCC----
Q 003936 500 IGNLEYLKVLTIKGT-AIR-----EVPESLGQLSSLEWLVLSDNNLQI-----IPESLNQLSSLVSLKLSNNNLER---- 564 (785)
Q Consensus 500 ~~~l~~L~~L~L~~n-~l~-----~lp~~~~~l~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~L~~n~l~~---- 564 (785)
+.+-+.|++|+|+++ .|. .+...+..-+.|+.|+|++|.+.. +.+.+..-+.|+.|+|++|.|..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345578999999985 776 345567777899999999999974 55667778899999999999983
Q ss_pred -CCCcCcCCCCCCEEeCCCCCC
Q 003936 565 -IPERLDPLSSLKYLDLFENNL 585 (785)
Q Consensus 565 -lp~~l~~l~~L~~L~l~~n~l 585 (785)
+-+.+..-+.|++|+|++|..
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~ 138 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQ 138 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSS
T ss_pred HHHHHHhhCCceeEEECCCCcC
Confidence 455677778899999987643
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=21.95 E-value=44 Score=26.88 Aligned_cols=45 Identities=13% Similarity=0.028 Sum_probs=32.9
Q ss_pred ceecCHHHHhcccccceeeeecCCCccccccCCCCCC--CceEEEEecCCC
Q 003936 7 EIQINPYTFSKMTELRLLKFCGSKNKCMVHSLEGVPF--TELRYFEWHQFP 55 (785)
Q Consensus 7 ~~~i~~~~f~~l~~Lr~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~ 55 (785)
...|...||.+|++|+.+.|-.+- ..+-...+. .+|+.+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~v----~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPNI----GLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTTS----SCCCTTSSTTCTTCCCEEECCSC
T ss_pred cCEecHHHhcCCCCCcEEEcCCch----heEcHHHHhccCCccEEEEcCCC
Confidence 467899999999999999997742 334444443 788888877643
Done!