Query 003937
Match_columns 785
No_of_seqs 873 out of 4955
Neff 10.6
Searched_HMMs 46136
Date Thu Mar 28 14:38:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003937.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003937hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3E-138 6E-143 1211.5 84.3 766 9-783 47-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 4E-123 8E-128 1058.8 72.2 613 107-785 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 1.9E-81 4.1E-86 733.4 56.7 678 43-780 46-746 (857)
4 PLN03218 maturation of RBCL 1; 100.0 5.1E-68 1.1E-72 605.8 57.5 524 43-583 365-916 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 2.3E-67 5E-72 600.4 58.3 512 77-652 368-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.1E-67 2.4E-72 602.8 53.3 466 15-548 89-561 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 3.5E-34 7.6E-39 343.7 69.6 621 12-642 226-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.1E-33 2.4E-38 339.4 69.9 625 11-647 191-868 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 2.3E-33 5E-38 234.1 8.5 106 652-775 2-116 (116)
10 PRK11447 cellulose synthase su 100.0 8.2E-24 1.8E-28 253.9 69.1 623 12-648 27-744 (1157)
11 PRK11447 cellulose synthase su 100.0 7.8E-23 1.7E-27 245.5 60.1 583 51-646 31-701 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 4E-21 8.7E-26 219.8 62.3 593 24-646 55-741 (987)
13 PRK09782 bacteriophage N4 rece 99.9 6.6E-20 1.4E-24 209.9 60.4 565 59-646 55-707 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 1.3E-18 2.9E-23 175.9 35.3 381 212-637 117-511 (966)
15 KOG4626 O-linked N-acetylgluco 99.8 5.6E-18 1.2E-22 171.5 31.3 420 215-645 52-485 (966)
16 PRK11788 tetratricopeptide rep 99.8 7.1E-18 1.5E-22 180.9 32.4 289 322-652 44-354 (389)
17 PRK11788 tetratricopeptide rep 99.8 4.5E-18 9.9E-23 182.4 30.8 255 386-645 44-311 (389)
18 TIGR00990 3a0801s09 mitochondr 99.8 3.2E-16 6.8E-21 177.1 43.8 251 390-645 307-571 (615)
19 KOG2002 TPR-containing nuclear 99.8 6E-15 1.3E-19 158.1 48.8 540 95-645 146-745 (1018)
20 KOG2002 TPR-containing nuclear 99.8 8.4E-15 1.8E-19 157.0 48.2 575 29-646 24-676 (1018)
21 PRK15174 Vi polysaccharide exp 99.8 1.2E-15 2.5E-20 171.7 37.9 287 323-616 86-386 (656)
22 PRK10049 pgaA outer membrane p 99.8 1.6E-14 3.4E-19 166.2 46.3 89 555-643 364-454 (765)
23 PRK10049 pgaA outer membrane p 99.8 6.1E-15 1.3E-19 169.7 42.8 398 212-618 16-463 (765)
24 PRK15174 Vi polysaccharide exp 99.8 2.4E-15 5.1E-20 169.2 36.1 319 318-645 47-381 (656)
25 TIGR00990 3a0801s09 mitochondr 99.8 2.7E-14 5.9E-19 161.4 44.6 417 113-576 130-568 (615)
26 PRK14574 hmsH outer membrane p 99.7 5.7E-14 1.2E-18 158.2 45.5 430 188-644 42-512 (822)
27 PRK14574 hmsH outer membrane p 99.7 1.2E-13 2.5E-18 155.7 44.8 442 154-618 43-520 (822)
28 KOG4422 Uncharacterized conser 99.7 2.3E-13 4.9E-18 132.7 40.1 331 18-448 121-469 (625)
29 KOG0495 HAT repeat protein [RN 99.7 4.7E-11 1E-15 122.8 54.4 623 8-660 241-893 (913)
30 KOG2076 RNA polymerase III tra 99.7 1.7E-12 3.6E-17 138.8 44.3 534 92-629 152-787 (895)
31 KOG4422 Uncharacterized conser 99.7 1.3E-12 2.9E-17 127.4 37.3 247 234-514 199-468 (625)
32 KOG2076 RNA polymerase III tra 99.7 7.2E-11 1.6E-15 126.5 50.7 604 25-645 151-849 (895)
33 KOG4318 Bicoid mRNA stability 99.6 6.2E-12 1.3E-16 133.6 38.3 320 317-648 463-811 (1088)
34 KOG2003 TPR repeat-containing 99.6 3E-12 6.6E-17 125.6 31.0 271 355-631 428-709 (840)
35 KOG0495 HAT repeat protein [RN 99.5 7.5E-10 1.6E-14 114.2 43.3 491 78-624 379-893 (913)
36 KOG4318 Bicoid mRNA stability 99.5 1.3E-10 2.8E-15 123.9 38.9 553 34-649 11-598 (1088)
37 PF13429 TPR_15: Tetratricopep 99.5 1.5E-13 3.3E-18 139.3 11.0 255 384-643 15-275 (280)
38 KOG2003 TPR repeat-containing 99.5 3.6E-11 7.7E-16 118.2 26.2 162 16-179 165-343 (840)
39 KOG1915 Cell cycle control pro 99.4 8.2E-09 1.8E-13 102.8 40.1 491 112-642 75-622 (677)
40 KOG1915 Cell cycle control pro 99.4 3.8E-09 8.2E-14 105.1 37.4 373 26-405 86-535 (677)
41 KOG0547 Translocase of outer m 99.4 8.1E-10 1.8E-14 110.3 30.7 214 424-643 338-564 (606)
42 KOG1126 DNA-binding cell divis 99.4 3.2E-11 6.9E-16 125.3 21.6 160 478-644 420-585 (638)
43 PRK10747 putative protoheme IX 99.4 4.4E-10 9.6E-15 119.3 30.1 274 360-643 98-388 (398)
44 PRK10747 putative protoheme IX 99.4 1.1E-09 2.3E-14 116.4 32.9 278 326-611 97-390 (398)
45 TIGR00540 hemY_coli hemY prote 99.4 1.4E-09 3E-14 116.3 33.8 283 324-610 95-398 (409)
46 KOG1126 DNA-binding cell divis 99.4 9E-11 2E-15 122.0 23.4 274 328-646 334-621 (638)
47 KOG2047 mRNA splicing factor [ 99.4 4.4E-07 9.6E-12 94.1 48.8 286 48-338 102-450 (835)
48 KOG1155 Anaphase-promoting com 99.3 4.2E-09 9E-14 104.8 31.5 249 286-575 235-491 (559)
49 KOG2047 mRNA splicing factor [ 99.3 9.3E-07 2E-11 91.9 48.7 182 65-254 92-293 (835)
50 KOG1155 Anaphase-promoting com 99.3 6.3E-09 1.4E-13 103.5 31.5 328 308-644 159-494 (559)
51 PF13429 TPR_15: Tetratricopep 99.3 7.8E-12 1.7E-16 126.8 11.6 224 379-610 46-276 (280)
52 TIGR00540 hemY_coli hemY prote 99.3 3E-09 6.5E-14 113.7 31.2 280 357-643 95-397 (409)
53 PF13041 PPR_2: PPR repeat fam 99.3 8.6E-12 1.9E-16 88.2 6.8 50 477-526 1-50 (50)
54 TIGR02521 type_IV_pilW type IV 99.2 2E-09 4.4E-14 106.1 24.1 199 445-644 29-231 (234)
55 KOG1173 Anaphase-promoting com 99.2 4.2E-08 9E-13 100.4 33.0 496 11-556 14-528 (611)
56 KOG0985 Vesicle coat protein c 99.2 1.7E-06 3.7E-11 94.1 46.2 585 19-643 487-1247(1666)
57 KOG0547 Translocase of outer m 99.2 1.4E-07 3.1E-12 94.7 35.1 219 387-613 336-568 (606)
58 PF13041 PPR_2: PPR repeat fam 99.2 3E-11 6.6E-16 85.3 6.6 50 375-424 1-50 (50)
59 KOG4162 Predicted calmodulin-b 99.2 2.6E-07 5.7E-12 98.1 38.1 493 122-644 239-782 (799)
60 KOG1173 Anaphase-promoting com 99.2 2.4E-07 5.2E-12 94.9 34.6 261 376-643 243-516 (611)
61 KOG1840 Kinesin light chain [C 99.2 1.7E-08 3.7E-13 106.6 26.6 230 414-643 201-477 (508)
62 COG3071 HemY Uncharacterized e 99.1 9.7E-08 2.1E-12 94.0 28.7 287 255-610 97-389 (400)
63 KOG3785 Uncharacterized conser 99.1 7.6E-07 1.6E-11 85.8 33.7 442 156-648 33-493 (557)
64 COG3071 HemY Uncharacterized e 99.1 2.8E-07 6E-12 90.8 30.1 258 249-513 125-395 (400)
65 KOG2376 Signal recognition par 99.1 2.7E-06 5.9E-11 87.9 37.7 182 451-640 313-515 (652)
66 COG2956 Predicted N-acetylgluc 99.1 1.3E-07 2.8E-12 90.1 26.1 259 327-591 49-324 (389)
67 COG2956 Predicted N-acetylgluc 99.1 2.3E-07 5E-12 88.5 27.7 237 318-560 74-325 (389)
68 KOG3616 Selective LIM binding 99.1 5.3E-06 1.1E-10 87.3 39.9 528 51-641 560-1130(1636)
69 KOG3785 Uncharacterized conser 99.1 7.7E-07 1.7E-11 85.7 30.8 452 86-619 29-497 (557)
70 KOG3617 WD40 and TPR repeat-co 99.1 1.9E-05 4.2E-10 84.4 43.7 81 242-338 912-992 (1416)
71 KOG3616 Selective LIM binding 99.1 1.2E-06 2.6E-11 91.9 34.5 129 195-340 546-675 (1636)
72 KOG0985 Vesicle coat protein c 99.1 5.6E-05 1.2E-09 82.7 47.9 572 28-645 658-1370(1666)
73 KOG1174 Anaphase-promoting com 99.1 1.7E-06 3.6E-11 85.3 33.3 160 455-618 342-507 (564)
74 PRK12370 invasion protein regu 99.0 8.7E-08 1.9E-12 106.6 26.3 244 393-646 277-536 (553)
75 PRK11189 lipoprotein NlpI; Pro 99.0 1E-07 2.3E-12 96.8 23.2 213 426-647 40-267 (296)
76 TIGR02521 type_IV_pilW type IV 99.0 1.9E-07 4.1E-12 92.0 24.3 197 377-611 31-232 (234)
77 KOG2376 Signal recognition par 99.0 1.8E-05 3.8E-10 82.1 37.6 460 3-538 3-515 (652)
78 KOG4162 Predicted calmodulin-b 99.0 4.6E-06 9.9E-11 89.0 34.2 426 175-617 318-789 (799)
79 KOG1840 Kinesin light chain [C 99.0 1.7E-07 3.6E-12 99.2 23.8 243 314-610 200-478 (508)
80 KOG3617 WD40 and TPR repeat-co 98.9 6.9E-05 1.5E-09 80.3 42.0 541 22-645 737-1359(1416)
81 KOG1156 N-terminal acetyltrans 98.9 7.2E-06 1.6E-10 85.8 34.2 435 112-576 10-465 (700)
82 KOG1129 TPR repeat-containing 98.9 6E-08 1.3E-12 92.2 17.0 226 350-645 227-458 (478)
83 PRK12370 invasion protein regu 98.9 1.9E-07 4.1E-12 103.9 23.4 211 426-644 275-501 (553)
84 COG3063 PilF Tfp pilus assembl 98.9 1.3E-07 2.8E-12 86.1 17.7 161 482-647 38-204 (250)
85 KOG1174 Anaphase-promoting com 98.9 1.5E-05 3.3E-10 78.7 32.6 183 459-646 312-501 (564)
86 KOG1127 TPR repeat-containing 98.8 1.2E-05 2.7E-10 87.9 33.2 542 81-643 494-1102(1238)
87 PRK11189 lipoprotein NlpI; Pro 98.8 2.7E-06 5.9E-11 86.4 25.4 218 392-617 41-271 (296)
88 KOG1127 TPR repeat-containing 98.8 9.5E-05 2.1E-09 81.2 36.9 570 48-643 492-1136(1238)
89 KOG1129 TPR repeat-containing 98.8 1.4E-06 2.9E-11 83.2 19.9 251 289-576 190-455 (478)
90 KOG1156 N-terminal acetyltrans 98.7 5.3E-05 1.1E-09 79.5 32.8 238 245-487 11-260 (700)
91 PF12569 NARP1: NMDA receptor- 98.7 0.00012 2.6E-09 78.9 37.0 94 315-408 196-293 (517)
92 PF12569 NARP1: NMDA receptor- 98.7 2.3E-05 5E-10 84.4 29.7 281 321-610 12-333 (517)
93 PF04733 Coatomer_E: Coatomer 98.7 2E-06 4.3E-11 86.0 18.9 155 454-616 109-270 (290)
94 KOG1914 mRNA cleavage and poly 98.6 0.0012 2.5E-08 68.3 38.0 174 393-568 347-528 (656)
95 KOG4340 Uncharacterized conser 98.6 6.1E-06 1.3E-10 77.8 19.2 303 316-641 13-335 (459)
96 PF04733 Coatomer_E: Coatomer 98.6 6.4E-07 1.4E-11 89.6 13.4 193 444-645 63-265 (290)
97 COG3063 PilF Tfp pilus assembl 98.6 1.6E-05 3.5E-10 72.8 20.8 190 452-643 40-234 (250)
98 KOG0624 dsRNA-activated protei 98.6 0.00011 2.3E-09 71.1 26.8 292 319-616 44-375 (504)
99 cd05804 StaR_like StaR_like; a 98.6 0.00017 3.8E-09 76.1 31.7 296 347-646 7-337 (355)
100 KOG0548 Molecular co-chaperone 98.5 0.0005 1.1E-08 71.0 31.8 238 349-628 227-472 (539)
101 KOG1125 TPR repeat-containing 98.5 8E-06 1.7E-10 84.5 19.0 216 322-541 294-525 (579)
102 PRK04841 transcriptional regul 98.5 0.0012 2.6E-08 79.5 40.4 48 221-268 384-435 (903)
103 KOG4340 Uncharacterized conser 98.5 0.00023 5E-09 67.5 25.7 384 214-645 13-443 (459)
104 KOG1125 TPR repeat-containing 98.5 5.6E-06 1.2E-10 85.6 16.6 219 423-644 296-526 (579)
105 PF12854 PPR_1: PPR repeat 98.5 2.1E-07 4.5E-12 58.8 3.9 33 175-207 2-34 (34)
106 PF12854 PPR_1: PPR repeat 98.5 2.5E-07 5.4E-12 58.4 4.2 32 545-576 2-33 (34)
107 PRK04841 transcriptional regul 98.4 0.00081 1.8E-08 80.9 36.9 324 323-646 384-761 (903)
108 cd05804 StaR_like StaR_like; a 98.4 0.00045 9.8E-09 73.0 30.4 85 319-403 120-212 (355)
109 KOG1070 rRNA processing protei 98.4 4.8E-05 1E-09 86.3 22.9 231 339-610 1451-1699(1710)
110 PRK15359 type III secretion sy 98.4 8.4E-06 1.8E-10 72.7 13.9 122 500-627 14-137 (144)
111 TIGR03302 OM_YfiO outer membra 98.4 2.6E-05 5.7E-10 76.8 18.5 181 445-645 31-232 (235)
112 KOG0548 Molecular co-chaperone 98.4 0.0003 6.6E-09 72.5 25.5 376 250-646 10-456 (539)
113 PRK10370 formate-dependent nit 98.3 4.6E-05 9.9E-10 72.0 17.6 118 527-646 52-174 (198)
114 KOG1070 rRNA processing protei 98.3 7E-05 1.5E-09 85.1 21.0 201 444-648 1455-1666(1710)
115 PRK15363 pathogenicity island 98.3 2.2E-05 4.8E-10 68.6 13.0 118 550-690 35-154 (157)
116 PRK15359 type III secretion sy 98.2 2.1E-05 4.5E-10 70.1 13.0 99 546-646 22-122 (144)
117 KOG1128 Uncharacterized conser 98.2 4.6E-05 9.9E-10 81.1 16.1 189 442-646 393-583 (777)
118 PLN02789 farnesyltranstransfer 98.2 0.00053 1.1E-08 69.7 23.4 225 379-643 39-300 (320)
119 COG5010 TadD Flp pilus assembl 98.2 0.00019 4.2E-09 67.4 18.3 117 520-638 106-224 (257)
120 PRK15179 Vi polysaccharide bio 98.2 0.00016 3.4E-09 81.1 20.7 139 478-620 85-226 (694)
121 TIGR00756 PPR pentatricopeptid 98.2 3.5E-06 7.6E-11 54.2 4.5 35 480-514 1-35 (35)
122 PRK10370 formate-dependent nit 98.1 0.00017 3.7E-09 68.1 17.3 154 454-620 23-182 (198)
123 COG5010 TadD Flp pilus assembl 98.1 0.00019 4.1E-09 67.5 16.4 135 510-646 62-198 (257)
124 COG4783 Putative Zn-dependent 98.1 0.0011 2.4E-08 68.0 22.9 119 523-643 315-435 (484)
125 TIGR03302 OM_YfiO outer membra 98.1 0.00025 5.3E-09 69.9 18.5 182 411-613 32-234 (235)
126 TIGR00756 PPR pentatricopeptid 98.1 6.7E-06 1.5E-10 52.9 4.4 35 378-412 1-35 (35)
127 KOG2053 Mitochondrial inherita 98.0 0.038 8.1E-07 61.2 39.4 167 416-588 440-619 (932)
128 KOG1128 Uncharacterized conser 98.0 0.0013 2.9E-08 70.4 23.1 210 349-576 401-613 (777)
129 COG4783 Putative Zn-dependent 98.0 0.0016 3.4E-08 66.9 22.1 144 481-646 308-455 (484)
130 PRK15179 Vi polysaccharide bio 98.0 0.0011 2.4E-08 74.5 22.7 145 442-590 81-230 (694)
131 PF13812 PPR_3: Pentatricopept 98.0 1.3E-05 2.8E-10 51.1 4.5 34 479-512 1-34 (34)
132 TIGR02552 LcrH_SycD type III s 98.0 9.9E-05 2.2E-09 65.4 11.4 96 550-645 17-114 (135)
133 KOG1914 mRNA cleavage and poly 98.0 0.036 7.9E-07 57.7 37.1 211 429-642 310-536 (656)
134 PRK14720 transcript cleavage f 97.9 0.0024 5.1E-08 72.6 24.3 149 449-627 118-268 (906)
135 PF13812 PPR_3: Pentatricopept 97.9 1.7E-05 3.6E-10 50.6 4.3 33 111-143 2-34 (34)
136 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00018 3.8E-09 74.6 13.8 121 518-643 173-295 (395)
137 KOG3081 Vesicle coat complex C 97.9 0.0044 9.6E-08 58.4 21.4 85 529-615 188-275 (299)
138 KOG0624 dsRNA-activated protei 97.9 0.032 6.9E-07 54.6 27.8 307 46-374 36-369 (504)
139 PLN02789 farnesyltranstransfer 97.8 0.0023 5.1E-08 65.1 20.4 186 455-644 45-249 (320)
140 PRK14720 transcript cleavage f 97.8 0.0025 5.3E-08 72.5 22.1 172 313-515 31-203 (906)
141 TIGR02552 LcrH_SycD type III s 97.8 0.00058 1.3E-08 60.4 13.4 113 501-617 5-120 (135)
142 KOG2053 Mitochondrial inherita 97.8 0.11 2.3E-06 57.8 42.1 155 482-643 439-606 (932)
143 KOG3060 Uncharacterized conser 97.8 0.0075 1.6E-07 56.5 20.1 168 450-622 55-231 (289)
144 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00094 2E-08 69.3 16.1 127 448-580 170-298 (395)
145 PF01535 PPR: PPR repeat; Int 97.7 3.8E-05 8.2E-10 47.6 3.4 31 480-510 1-31 (31)
146 PF01535 PPR: PPR repeat; Int 97.7 5.4E-05 1.2E-09 46.9 3.5 31 111-141 1-31 (31)
147 KOG3081 Vesicle coat complex C 97.7 0.029 6.4E-07 53.1 22.4 91 451-542 177-270 (299)
148 cd00189 TPR Tetratricopeptide 97.6 0.00064 1.4E-08 55.4 10.3 92 553-644 3-96 (100)
149 KOG2041 WD40 repeat protein [G 97.6 0.12 2.6E-06 55.5 28.0 334 177-573 689-1044(1189)
150 PF13414 TPR_11: TPR repeat; P 97.6 0.00024 5.2E-09 54.1 6.6 64 581-644 2-66 (69)
151 PF12895 Apc3: Anaphase-promot 97.5 0.00012 2.7E-09 58.3 4.7 78 563-641 2-83 (84)
152 KOG3060 Uncharacterized conser 97.5 0.0067 1.5E-07 56.8 16.1 183 460-646 25-221 (289)
153 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0016 3.5E-08 56.0 11.4 93 553-645 5-105 (119)
154 PRK10153 DNA-binding transcrip 97.4 0.0053 1.2E-07 66.9 17.2 138 477-645 335-482 (517)
155 PF09976 TPR_21: Tetratricopep 97.4 0.0041 9E-08 55.6 13.5 52 589-641 92-143 (145)
156 PLN03088 SGT1, suppressor of 97.4 0.0011 2.5E-08 69.0 10.7 103 521-625 9-113 (356)
157 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0025 5.4E-08 54.8 11.3 102 518-619 6-113 (119)
158 PF09976 TPR_21: Tetratricopep 97.4 0.0051 1.1E-07 55.0 13.4 82 321-402 56-143 (145)
159 PF13432 TPR_16: Tetratricopep 97.3 0.00062 1.3E-08 51.1 6.2 58 588-645 3-60 (65)
160 KOG0553 TPR repeat-containing 97.3 0.0008 1.7E-08 64.7 7.7 101 522-625 89-192 (304)
161 CHL00033 ycf3 photosystem I as 97.3 0.0026 5.7E-08 58.6 11.0 93 550-642 35-139 (168)
162 KOG0553 TPR repeat-containing 97.3 0.0022 4.8E-08 61.8 10.1 100 487-591 89-191 (304)
163 PRK02603 photosystem I assembl 97.2 0.0037 8.1E-08 57.8 11.5 80 552-631 37-121 (172)
164 PRK02603 photosystem I assembl 97.2 0.0077 1.7E-07 55.7 13.3 130 478-631 34-166 (172)
165 PF05843 Suf: Suppressor of fo 97.2 0.01 2.2E-07 59.6 15.0 133 480-615 2-140 (280)
166 PF04840 Vps16_C: Vps16, C-ter 97.1 0.4 8.6E-06 48.9 30.7 121 348-487 179-299 (319)
167 PLN03088 SGT1, suppressor of 97.1 0.0065 1.4E-07 63.4 13.0 103 485-592 8-113 (356)
168 PRK15331 chaperone protein Sic 97.1 0.01 2.2E-07 52.4 12.0 88 557-644 44-133 (165)
169 PF04840 Vps16_C: Vps16, C-ter 97.1 0.41 8.8E-06 48.8 29.8 120 452-592 182-301 (319)
170 PF14559 TPR_19: Tetratricopep 97.1 0.00085 1.8E-08 50.9 4.6 53 593-645 2-54 (68)
171 PF13432 TPR_16: Tetratricopep 97.1 0.0022 4.8E-08 48.0 6.8 61 556-616 3-65 (65)
172 PF10037 MRP-S27: Mitochondria 97.1 0.015 3.3E-07 60.8 14.8 121 407-527 61-186 (429)
173 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.49 1.1E-05 48.5 32.2 88 33-122 29-121 (660)
174 KOG2041 WD40 repeat protein [G 97.0 0.68 1.5E-05 50.1 28.1 186 193-405 747-951 (1189)
175 KOG0550 Molecular chaperone (D 97.0 0.018 3.9E-07 57.9 14.2 88 558-645 257-350 (486)
176 PF13431 TPR_17: Tetratricopep 97.0 0.00053 1.1E-08 43.2 2.4 33 604-636 1-33 (34)
177 cd00189 TPR Tetratricopeptide 97.0 0.0069 1.5E-07 49.0 9.9 89 482-574 3-92 (100)
178 COG4700 Uncharacterized protei 97.0 0.1 2.3E-06 46.6 16.9 133 510-644 85-221 (251)
179 PF13371 TPR_9: Tetratricopept 96.9 0.0026 5.7E-08 48.9 6.4 57 590-646 3-59 (73)
180 PF08579 RPM2: Mitochondrial r 96.9 0.015 3.3E-07 47.3 10.1 80 113-192 28-116 (120)
181 CHL00033 ycf3 photosystem I as 96.9 0.044 9.5E-07 50.5 15.0 80 479-561 35-117 (168)
182 PF07079 DUF1347: Protein of u 96.8 0.77 1.7E-05 47.3 31.6 73 569-642 443-521 (549)
183 PF05843 Suf: Suppressor of fo 96.7 0.055 1.2E-06 54.4 15.4 81 426-507 50-135 (280)
184 PF06239 ECSIT: Evolutionarily 96.7 0.019 4.2E-07 52.9 10.8 98 467-566 34-154 (228)
185 KOG2114 Vacuolar assembly/sort 96.7 0.51 1.1E-05 52.3 22.9 174 82-268 337-516 (933)
186 PF08579 RPM2: Mitochondrial r 96.7 0.025 5.4E-07 46.1 9.8 81 379-459 27-116 (120)
187 PF13414 TPR_11: TPR repeat; P 96.6 0.0043 9.2E-08 47.1 5.4 64 550-613 3-69 (69)
188 PRK10153 DNA-binding transcrip 96.6 0.057 1.2E-06 59.0 15.9 49 598-646 400-450 (517)
189 COG4235 Cytochrome c biogenesi 96.6 0.0084 1.8E-07 58.3 8.4 103 547-649 153-260 (287)
190 PF10037 MRP-S27: Mitochondria 96.6 0.027 5.9E-07 58.9 12.5 121 442-563 61-186 (429)
191 PF12895 Apc3: Anaphase-promot 96.6 0.0048 1E-07 49.1 5.6 80 492-575 2-83 (84)
192 COG3898 Uncharacterized membra 96.6 0.99 2.2E-05 45.5 27.9 244 388-645 131-392 (531)
193 KOG1538 Uncharacterized conser 96.6 0.18 3.9E-06 53.7 17.9 167 395-583 618-807 (1081)
194 KOG1130 Predicted G-alpha GTPa 96.5 0.024 5.2E-07 56.8 10.8 128 516-643 197-342 (639)
195 PF06239 ECSIT: Evolutionarily 96.5 0.027 5.8E-07 52.1 10.4 99 364-462 32-153 (228)
196 PRK10866 outer membrane biogen 96.5 0.37 8.1E-06 47.1 19.1 170 453-643 38-239 (243)
197 PF14559 TPR_19: Tetratricopep 96.5 0.0045 9.8E-08 46.8 4.6 53 563-615 4-58 (68)
198 PRK10866 outer membrane biogen 96.5 0.42 9.1E-06 46.8 19.3 55 486-540 182-238 (243)
199 PF03704 BTAD: Bacterial trans 96.5 0.043 9.4E-07 49.1 11.6 67 584-650 64-135 (146)
200 KOG2796 Uncharacterized conser 96.4 0.15 3.3E-06 48.2 14.9 138 379-518 179-323 (366)
201 COG4700 Uncharacterized protei 96.4 0.068 1.5E-06 47.7 11.8 103 543-645 82-189 (251)
202 PRK15363 pathogenicity island 96.4 0.067 1.4E-06 47.2 11.8 90 451-542 39-131 (157)
203 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.015 3.2E-07 60.2 8.9 63 582-644 75-140 (453)
204 KOG2280 Vacuolar assembly/sort 96.3 2.2 4.8E-05 46.9 30.2 105 454-575 691-795 (829)
205 PF12688 TPR_5: Tetratrico pep 96.3 0.05 1.1E-06 46.2 10.4 86 557-642 8-101 (120)
206 PF14938 SNAP: Soluble NSF att 96.3 0.52 1.1E-05 47.6 19.9 77 318-407 99-185 (282)
207 PF14938 SNAP: Soluble NSF att 96.3 1.4 3.1E-05 44.4 24.6 124 454-577 121-264 (282)
208 PF12688 TPR_5: Tetratrico pep 96.3 0.069 1.5E-06 45.3 10.9 91 485-575 7-100 (120)
209 PRK10803 tol-pal system protei 96.2 0.041 8.8E-07 54.3 10.7 93 552-644 145-245 (263)
210 PF13428 TPR_14: Tetratricopep 96.2 0.01 2.3E-07 40.1 4.5 42 583-624 2-43 (44)
211 PF07079 DUF1347: Protein of u 96.2 1.9 4.2E-05 44.5 36.1 133 60-193 18-180 (549)
212 KOG2796 Uncharacterized conser 96.2 0.36 7.8E-06 45.8 15.7 135 482-616 180-320 (366)
213 KOG1538 Uncharacterized conser 96.2 0.25 5.4E-06 52.7 16.2 196 38-268 625-843 (1081)
214 PF13371 TPR_9: Tetratricopept 96.1 0.021 4.5E-07 43.8 6.6 62 558-619 3-66 (73)
215 KOG1130 Predicted G-alpha GTPa 96.0 0.055 1.2E-06 54.4 10.4 128 414-541 197-342 (639)
216 PF13281 DUF4071: Domain of un 96.0 0.92 2E-05 46.7 19.3 160 452-614 146-337 (374)
217 PF13424 TPR_12: Tetratricopep 95.7 0.022 4.7E-07 44.4 5.0 61 583-643 6-73 (78)
218 KOG2114 Vacuolar assembly/sort 95.6 5 0.00011 44.9 26.3 175 215-403 338-516 (933)
219 KOG2280 Vacuolar assembly/sort 95.4 5.4 0.00012 44.1 27.3 324 284-640 443-794 (829)
220 KOG1920 IkappaB kinase complex 95.4 5.1 0.00011 46.8 23.7 66 319-404 958-1026(1265)
221 PRK10803 tol-pal system protei 95.3 0.28 6E-06 48.5 12.5 89 525-616 154-251 (263)
222 PF13424 TPR_12: Tetratricopep 95.2 0.029 6.3E-07 43.7 4.3 59 553-611 8-75 (78)
223 PF12921 ATP13: Mitochondrial 95.1 0.19 4.1E-06 43.1 9.2 52 544-595 46-101 (126)
224 KOG0543 FKBP-type peptidyl-pro 95.1 0.19 4.2E-06 51.0 10.6 63 582-644 257-319 (397)
225 COG5107 RNA14 Pre-mRNA 3'-end 95.1 4.9 0.00011 41.6 32.2 134 478-615 396-535 (660)
226 KOG4555 TPR repeat-containing 95.0 0.26 5.6E-06 41.3 9.1 89 559-647 52-146 (175)
227 PF13525 YfiO: Outer membrane 95.0 1.8 3.8E-05 41.2 16.5 54 353-406 12-71 (203)
228 PF09205 DUF1955: Domain of un 94.9 2 4.3E-05 36.4 15.9 141 489-648 12-152 (161)
229 smart00299 CLH Clathrin heavy 94.6 1.9 4.2E-05 38.0 15.1 122 452-593 12-136 (140)
230 PF13525 YfiO: Outer membrane 94.5 3.6 7.8E-05 39.1 17.5 162 454-636 12-198 (203)
231 PF12921 ATP13: Mitochondrial 94.5 0.38 8.2E-06 41.3 9.6 95 447-558 2-96 (126)
232 PF04184 ST7: ST7 protein; In 94.5 0.85 1.8E-05 47.8 13.4 147 491-652 180-331 (539)
233 COG0457 NrfG FOG: TPR repeat [ 94.5 4.9 0.00011 38.6 27.0 195 447-645 59-265 (291)
234 PRK11906 transcriptional regul 94.5 1.4 3E-05 46.2 15.1 143 495-640 274-431 (458)
235 PRK11906 transcriptional regul 94.4 0.68 1.5E-05 48.4 12.8 116 529-644 273-400 (458)
236 PF10300 DUF3808: Protein of u 94.2 10 0.00022 41.3 22.4 159 281-440 191-375 (468)
237 COG4235 Cytochrome c biogenesi 94.1 0.51 1.1E-05 46.2 10.5 111 240-385 154-268 (287)
238 PF13512 TPR_18: Tetratricopep 94.1 0.56 1.2E-05 40.7 9.6 66 560-625 20-91 (142)
239 PF03704 BTAD: Bacterial trans 93.8 0.33 7.1E-06 43.4 8.4 66 451-516 66-138 (146)
240 PLN03098 LPA1 LOW PSII ACCUMUL 93.8 0.39 8.5E-06 50.1 9.7 62 550-611 75-141 (453)
241 KOG0550 Molecular chaperone (D 93.8 9.3 0.0002 39.3 22.7 85 456-542 258-349 (486)
242 PF13281 DUF4071: Domain of un 93.7 7.9 0.00017 40.1 18.8 69 353-421 148-226 (374)
243 KOG3941 Intermediate in Toll s 93.7 0.55 1.2E-05 45.1 9.7 98 467-566 54-174 (406)
244 PF00515 TPR_1: Tetratricopept 93.5 0.16 3.4E-06 31.8 4.1 32 583-614 2-33 (34)
245 KOG3941 Intermediate in Toll s 93.4 0.71 1.5E-05 44.4 9.8 101 363-463 51-174 (406)
246 KOG1941 Acetylcholine receptor 93.4 1.5 3.2E-05 43.8 12.3 122 520-641 128-271 (518)
247 KOG2610 Uncharacterized conser 93.4 2.1 4.7E-05 42.3 13.2 113 492-607 116-234 (491)
248 KOG2066 Vacuolar assembly/sort 93.4 16 0.00035 40.8 27.9 100 187-290 363-467 (846)
249 PF07719 TPR_2: Tetratricopept 93.1 0.26 5.6E-06 30.7 4.7 32 584-615 3-34 (34)
250 KOG0543 FKBP-type peptidyl-pro 93.1 3.2 6.9E-05 42.6 14.5 136 487-644 216-354 (397)
251 KOG1585 Protein required for f 93.0 8.4 0.00018 36.6 16.6 197 419-640 38-251 (308)
252 COG0457 NrfG FOG: TPR repeat [ 92.6 9.8 0.00021 36.3 26.2 198 413-614 60-268 (291)
253 smart00299 CLH Clathrin heavy 92.5 7 0.00015 34.4 15.6 130 478-627 6-136 (140)
254 COG3898 Uncharacterized membra 92.5 14 0.0003 37.8 27.4 115 455-576 271-389 (531)
255 PF04053 Coatomer_WDAD: Coatom 92.2 4.7 0.0001 43.3 15.2 159 21-206 269-428 (443)
256 KOG2066 Vacuolar assembly/sort 92.0 24 0.00053 39.5 20.9 143 180-343 392-535 (846)
257 COG3118 Thioredoxin domain-con 91.9 5.2 0.00011 39.3 13.6 120 523-645 143-265 (304)
258 KOG1258 mRNA processing protei 91.4 24 0.00053 38.3 29.3 187 445-634 295-493 (577)
259 COG1729 Uncharacterized protei 91.2 1.6 3.4E-05 42.3 9.4 57 588-644 184-243 (262)
260 PF10300 DUF3808: Protein of u 91.1 3.9 8.4E-05 44.5 13.7 172 31-207 175-374 (468)
261 KOG2610 Uncharacterized conser 91.1 2 4.3E-05 42.5 9.9 116 526-643 115-236 (491)
262 PF04053 Coatomer_WDAD: Coatom 90.9 5.4 0.00012 42.8 14.1 132 415-577 298-429 (443)
263 PF08631 SPO22: Meiosis protei 90.7 20 0.00043 36.0 24.3 17 592-608 256-272 (278)
264 PF07035 Mic1: Colon cancer-as 90.6 9.9 0.00022 34.3 13.3 60 244-308 91-150 (167)
265 PF13170 DUF4003: Protein of u 90.5 6.8 0.00015 39.5 13.7 92 463-557 119-224 (297)
266 PF13176 TPR_7: Tetratricopept 90.4 0.54 1.2E-05 29.9 3.8 26 618-643 1-26 (36)
267 PF00637 Clathrin: Region in C 90.1 0.14 3.1E-06 45.5 1.3 84 151-237 13-96 (143)
268 PF13512 TPR_18: Tetratricopep 89.9 9.3 0.0002 33.3 12.0 112 487-616 18-133 (142)
269 COG4105 ComL DNA uptake lipopr 89.6 21 0.00045 34.6 18.3 169 458-644 45-232 (254)
270 PRK15331 chaperone protein Sic 89.2 2.4 5.2E-05 37.9 8.2 85 457-542 47-133 (165)
271 PF09613 HrpB1_HrpK: Bacterial 89.2 15 0.00033 32.7 13.1 88 523-613 19-108 (160)
272 COG3629 DnrI DNA-binding trans 89.1 1.9 4.1E-05 42.5 8.3 62 583-644 154-215 (280)
273 PRK09687 putative lyase; Provi 89.1 27 0.00058 35.1 24.3 120 75-196 33-158 (280)
274 PF00637 Clathrin: Region in C 88.9 1.3 2.9E-05 39.2 6.8 129 18-160 12-140 (143)
275 COG1729 Uncharacterized protei 88.9 3.7 8.1E-05 39.9 9.9 49 492-542 154-206 (262)
276 KOG1941 Acetylcholine receptor 88.9 13 0.00028 37.5 13.6 128 484-611 127-275 (518)
277 PF04097 Nic96: Nup93/Nic96; 88.6 48 0.0011 37.6 20.2 87 385-476 266-356 (613)
278 KOG4555 TPR repeat-containing 88.5 3.3 7.2E-05 35.0 7.9 53 488-542 52-105 (175)
279 PF13181 TPR_8: Tetratricopept 88.4 0.87 1.9E-05 28.3 3.7 31 584-614 3-33 (34)
280 PF07035 Mic1: Colon cancer-as 88.2 19 0.00042 32.5 13.3 134 33-174 14-149 (167)
281 PF04184 ST7: ST7 protein; In 88.2 35 0.00075 36.4 16.8 58 483-541 263-322 (539)
282 TIGR02561 HrpB1_HrpK type III 87.8 3.6 7.7E-05 35.9 8.1 54 594-647 22-75 (153)
283 COG3629 DnrI DNA-binding trans 87.6 5.1 0.00011 39.5 10.2 76 448-523 154-236 (280)
284 COG4105 ComL DNA uptake lipopr 87.5 29 0.00062 33.6 19.8 170 354-541 42-231 (254)
285 PF13176 TPR_7: Tetratricopept 87.5 1 2.3E-05 28.6 3.7 28 584-611 1-28 (36)
286 PF09205 DUF1955: Domain of un 87.3 18 0.00038 31.0 13.2 59 483-542 90-148 (161)
287 PF13428 TPR_14: Tetratricopep 87.2 1.9 4E-05 28.9 5.0 33 481-515 3-35 (44)
288 KOG1258 mRNA processing protei 87.2 50 0.0011 36.1 34.0 181 345-527 296-488 (577)
289 KOG1920 IkappaB kinase complex 86.9 75 0.0016 37.8 24.3 80 487-577 947-1026(1265)
290 PF09613 HrpB1_HrpK: Bacterial 86.9 4.2 9.1E-05 36.2 8.2 54 593-646 21-74 (160)
291 PF13170 DUF4003: Protein of u 86.9 16 0.00034 36.9 13.5 92 361-454 118-224 (297)
292 PF02259 FAT: FAT domain; Int 86.3 45 0.00098 34.7 22.5 148 478-628 145-304 (352)
293 PF00515 TPR_1: Tetratricopept 86.3 1.6 3.5E-05 27.1 4.1 32 480-513 2-33 (34)
294 PRK09687 putative lyase; Provi 86.1 40 0.00086 33.9 26.4 49 374-424 65-117 (280)
295 KOG4234 TPR repeat-containing 84.9 3.5 7.6E-05 37.7 6.8 88 559-646 104-198 (271)
296 PF10602 RPN7: 26S proteasome 83.9 11 0.00024 34.7 10.1 94 481-576 38-139 (177)
297 KOG4570 Uncharacterized conser 83.1 8.9 0.00019 37.8 9.1 98 441-542 58-163 (418)
298 PF10602 RPN7: 26S proteasome 82.8 14 0.00031 34.0 10.3 94 112-207 38-140 (177)
299 COG4649 Uncharacterized protei 82.2 19 0.0004 32.4 9.9 47 360-406 72-123 (221)
300 COG2976 Uncharacterized protei 82.1 19 0.0004 33.2 10.2 89 319-407 95-189 (207)
301 PRK11619 lytic murein transgly 81.9 1E+02 0.0022 35.2 41.7 211 329-552 295-513 (644)
302 PF08631 SPO22: Meiosis protei 81.5 62 0.0013 32.5 23.5 25 382-406 126-150 (278)
303 COG3118 Thioredoxin domain-con 81.4 60 0.0013 32.2 17.7 114 423-540 145-262 (304)
304 PF02259 FAT: FAT domain; Int 81.2 73 0.0016 33.1 17.9 65 581-645 145-213 (352)
305 PF07719 TPR_2: Tetratricopept 80.4 3.9 8.4E-05 25.2 4.1 27 481-507 3-29 (34)
306 TIGR02508 type_III_yscG type I 80.3 26 0.00056 28.3 9.1 83 51-149 24-106 (115)
307 KOG0890 Protein kinase of the 80.2 2E+02 0.0043 37.5 30.6 309 318-646 1388-1732(2382)
308 KOG1585 Protein required for f 79.9 59 0.0013 31.3 15.3 160 362-537 74-250 (308)
309 KOG4648 Uncharacterized conser 79.8 4.1 9E-05 40.4 5.8 110 522-638 105-217 (536)
310 PF07721 TPR_4: Tetratricopept 79.7 2.7 5.9E-05 24.3 2.9 24 617-640 2-25 (26)
311 PF13374 TPR_10: Tetratricopep 79.5 3.4 7.5E-05 26.9 3.8 28 617-644 3-30 (42)
312 PF13431 TPR_17: Tetratricopep 79.4 1.6 3.5E-05 27.3 2.0 22 345-366 12-33 (34)
313 COG4785 NlpI Lipoprotein NlpI, 78.4 60 0.0013 30.5 13.9 177 461-645 79-266 (297)
314 cd00923 Cyt_c_Oxidase_Va Cytoc 78.4 12 0.00026 29.9 6.7 62 495-558 23-84 (103)
315 PF11207 DUF2989: Protein of u 77.8 13 0.00028 34.5 8.0 75 561-636 118-198 (203)
316 PF13929 mRNA_stabil: mRNA sta 77.5 61 0.0013 32.1 12.9 111 95-205 144-263 (292)
317 PF02284 COX5A: Cytochrome c o 77.1 10 0.00022 30.6 6.2 60 497-558 28-87 (108)
318 PF10366 Vps39_1: Vacuolar sor 76.6 32 0.00069 28.6 9.4 65 317-405 3-67 (108)
319 TIGR02561 HrpB1_HrpK type III 76.5 32 0.00069 30.3 9.5 50 326-375 23-73 (153)
320 KOG1464 COP9 signalosome, subu 76.2 79 0.0017 30.7 17.9 230 361-595 42-317 (440)
321 KOG1550 Extracellular protein 74.4 91 0.002 35.0 15.3 82 565-648 343-429 (552)
322 smart00028 TPR Tetratricopepti 74.3 6.1 0.00013 23.2 3.8 29 585-613 4-32 (34)
323 PF10345 Cohesin_load: Cohesin 74.2 1.6E+02 0.0036 33.5 34.3 57 587-643 539-604 (608)
324 PRK15180 Vi polysaccharide bio 74.1 27 0.00059 36.6 9.9 119 490-614 300-423 (831)
325 PF14853 Fis1_TPR_C: Fis1 C-te 74.0 5.3 0.00012 28.1 3.5 31 587-617 6-36 (53)
326 TIGR02508 type_III_yscG type I 73.9 46 0.00099 26.9 9.6 60 353-415 46-105 (115)
327 PF13174 TPR_6: Tetratricopept 73.5 6.7 0.00014 23.8 3.7 25 589-613 7-31 (33)
328 PF13374 TPR_10: Tetratricopep 73.3 8 0.00017 25.0 4.3 28 480-507 3-30 (42)
329 KOG0276 Vesicle coat complex C 73.0 33 0.00071 37.3 10.4 133 49-206 615-747 (794)
330 KOG2396 HAT (Half-A-TPR) repea 71.8 1.5E+02 0.0032 31.9 31.2 90 553-642 463-556 (568)
331 PF02284 COX5A: Cytochrome c o 71.8 27 0.00059 28.3 7.3 53 570-622 33-85 (108)
332 COG4455 ImpE Protein of avirul 71.8 14 0.00031 34.5 6.6 63 554-616 5-69 (273)
333 PRK12798 chemotaxis protein; R 71.4 1.4E+02 0.003 31.4 21.0 180 460-642 125-321 (421)
334 PF13181 TPR_8: Tetratricopept 71.4 8.9 0.00019 23.5 3.9 28 617-644 2-29 (34)
335 PRK10941 hypothetical protein; 71.3 19 0.00041 35.7 8.0 61 585-645 184-244 (269)
336 KOG1586 Protein required for f 71.2 99 0.0021 29.6 12.1 24 593-616 165-188 (288)
337 cd00923 Cyt_c_Oxidase_Va Cytoc 71.0 28 0.0006 27.9 7.1 53 570-622 30-82 (103)
338 COG4785 NlpI Lipoprotein NlpI, 70.8 11 0.00024 35.1 5.7 109 523-637 74-187 (297)
339 KOG4648 Uncharacterized conser 70.7 16 0.00035 36.5 7.2 87 486-583 104-199 (536)
340 KOG0276 Vesicle coat complex C 70.3 70 0.0015 35.0 12.1 99 222-338 648-746 (794)
341 COG2976 Uncharacterized protei 70.1 94 0.002 28.9 17.0 112 497-613 70-190 (207)
342 COG4649 Uncharacterized protei 69.5 89 0.0019 28.4 14.0 121 489-610 68-195 (221)
343 KOG4570 Uncharacterized conser 68.2 82 0.0018 31.5 11.2 50 392-441 115-164 (418)
344 PF13174 TPR_6: Tetratricopept 68.2 7.1 0.00015 23.7 3.0 28 618-645 2-29 (33)
345 KOG1464 COP9 signalosome, subu 68.1 1.2E+02 0.0027 29.5 15.6 90 315-404 107-218 (440)
346 PRK11619 lytic murein transgly 67.3 2.3E+02 0.0051 32.4 33.4 116 492-610 254-374 (644)
347 COG3947 Response regulator con 67.2 1.1E+02 0.0023 30.4 11.6 56 349-404 282-340 (361)
348 KOG4507 Uncharacterized conser 66.7 41 0.00089 36.5 9.5 149 477-627 569-721 (886)
349 PF14853 Fis1_TPR_C: Fis1 C-te 65.3 45 0.00098 23.4 6.7 26 619-644 4-29 (53)
350 PF06552 TOM20_plant: Plant sp 65.1 29 0.00063 31.6 7.1 45 598-642 51-99 (186)
351 COG3947 Response regulator con 64.4 24 0.00053 34.6 6.8 59 585-643 282-340 (361)
352 PF11207 DUF2989: Protein of u 63.8 46 0.00099 31.1 8.3 73 394-467 123-198 (203)
353 PF06552 TOM20_plant: Plant sp 62.8 36 0.00079 31.0 7.2 45 598-649 96-140 (186)
354 cd08819 CARD_MDA5_2 Caspase ac 62.3 25 0.00054 27.6 5.3 35 92-127 49-83 (88)
355 KOG4234 TPR repeat-containing 60.7 1.3E+02 0.0029 28.0 10.3 54 487-541 103-161 (271)
356 PF04097 Nic96: Nup93/Nic96; 60.3 3.1E+02 0.0066 31.3 23.2 21 560-580 515-535 (613)
357 KOG1586 Protein required for f 60.2 1.6E+02 0.0036 28.2 16.7 56 559-614 163-227 (288)
358 PF14561 TPR_20: Tetratricopep 59.3 25 0.00055 28.0 5.2 44 602-645 8-51 (90)
359 COG4455 ImpE Protein of avirul 59.3 1.6E+02 0.0036 27.9 12.1 124 481-614 3-137 (273)
360 PRK15180 Vi polysaccharide bio 59.3 49 0.0011 34.8 8.4 129 458-591 300-434 (831)
361 PF09986 DUF2225: Uncharacteri 59.2 54 0.0012 31.3 8.4 62 584-645 120-194 (214)
362 cd08819 CARD_MDA5_2 Caspase ac 59.1 29 0.00062 27.3 5.2 65 164-230 21-85 (88)
363 TIGR03504 FimV_Cterm FimV C-te 57.8 18 0.00039 24.3 3.4 27 620-646 3-29 (44)
364 KOG3364 Membrane protein invol 57.8 97 0.0021 26.8 8.4 48 597-644 50-99 (149)
365 PF15161 Neuropep_like: Neurop 57.7 5.4 0.00012 27.5 0.9 18 740-758 11-28 (65)
366 KOG0376 Serine-threonine phosp 57.3 22 0.00047 37.6 5.6 83 561-643 15-99 (476)
367 PRK13342 recombination factor 57.0 2.8E+02 0.006 29.8 15.8 47 378-424 228-277 (413)
368 PF13934 ELYS: Nuclear pore co 56.4 1.3E+02 0.0028 29.0 10.6 15 562-576 152-166 (226)
369 KOG4279 Serine/threonine prote 56.1 3.5E+02 0.0077 30.8 16.5 152 451-615 205-399 (1226)
370 smart00386 HAT HAT (Half-A-TPR 55.0 24 0.00051 21.0 3.7 29 596-624 1-29 (33)
371 PF11768 DUF3312: Protein of u 54.6 1.5E+02 0.0033 32.4 11.3 58 451-508 412-473 (545)
372 KOG2396 HAT (Half-A-TPR) repea 54.5 3.1E+02 0.0067 29.6 33.0 102 510-614 455-563 (568)
373 PF13929 mRNA_stabil: mRNA sta 53.2 2.5E+02 0.0053 28.1 19.9 60 443-502 198-261 (292)
374 PF10366 Vps39_1: Vacuolar sor 53.2 96 0.0021 25.8 7.9 27 481-507 41-67 (108)
375 KOG1550 Extracellular protein 53.1 3.8E+02 0.0081 30.2 21.2 209 427-644 308-537 (552)
376 KOG4642 Chaperone-dependent E3 52.1 56 0.0012 31.3 6.8 68 577-644 38-106 (284)
377 KOG1308 Hsp70-interacting prot 52.0 11 0.00023 37.9 2.4 114 526-642 126-241 (377)
378 PF13762 MNE1: Mitochondrial s 52.0 79 0.0017 27.9 7.4 51 108-158 77-128 (145)
379 PF04910 Tcf25: Transcriptiona 50.9 1.7E+02 0.0037 30.6 11.2 64 581-644 99-167 (360)
380 TIGR03504 FimV_Cterm FimV C-te 50.5 29 0.00063 23.3 3.5 24 116-139 5-28 (44)
381 PF11846 DUF3366: Domain of un 50.5 34 0.00073 32.1 5.5 37 606-643 135-171 (193)
382 PF09670 Cas_Cas02710: CRISPR- 49.6 2.1E+02 0.0046 30.2 11.8 53 489-542 141-197 (379)
383 KOG2063 Vacuolar assembly/sort 48.4 4.4E+02 0.0096 31.2 14.5 25 113-137 507-531 (877)
384 PF04910 Tcf25: Transcriptiona 48.3 3.5E+02 0.0075 28.4 17.5 90 521-613 110-224 (360)
385 cd08326 CARD_CASP9 Caspase act 48.2 33 0.00072 26.9 4.1 49 78-126 29-77 (84)
386 COG2909 MalT ATP-dependent tra 47.5 5.2E+02 0.011 30.2 21.4 187 459-649 427-651 (894)
387 PF11838 ERAP1_C: ERAP1-like C 47.0 3.3E+02 0.0072 27.8 17.7 150 462-611 55-230 (324)
388 PF07720 TPR_3: Tetratricopept 46.3 57 0.0012 20.7 4.2 30 585-614 4-35 (36)
389 PF14863 Alkyl_sulf_dimr: Alky 46.1 93 0.002 27.3 7.0 66 566-634 57-122 (141)
390 PF11663 Toxin_YhaV: Toxin wit 45.5 27 0.00058 30.0 3.4 32 122-155 107-138 (140)
391 KOG0403 Neoplastic transformat 45.0 4.1E+02 0.0089 28.2 20.4 334 114-510 218-574 (645)
392 KOG2168 Cullins [Cell cycle co 44.9 5.6E+02 0.012 29.8 15.0 321 318-643 330-734 (835)
393 cd08326 CARD_CASP9 Caspase act 44.9 41 0.00089 26.4 4.2 33 225-257 44-76 (84)
394 PRK10564 maltose regulon perip 44.0 42 0.00092 33.4 5.0 46 477-522 254-300 (303)
395 KOG0292 Vesicle coat complex C 43.1 41 0.00088 38.4 5.2 98 519-640 625-722 (1202)
396 PHA02875 ankyrin repeat protei 42.2 4.6E+02 0.0099 28.0 16.5 230 33-268 15-264 (413)
397 COG4976 Predicted methyltransf 41.8 50 0.0011 31.4 4.8 58 559-616 4-63 (287)
398 PF11846 DUF3366: Domain of un 41.5 73 0.0016 29.8 6.3 35 579-613 141-175 (193)
399 PRK10941 hypothetical protein; 41.0 1.6E+02 0.0034 29.3 8.6 65 554-618 185-251 (269)
400 KOG1498 26S proteasome regulat 40.7 4.5E+02 0.0097 27.5 18.8 107 555-665 136-261 (439)
401 PF11663 Toxin_YhaV: Toxin wit 39.9 33 0.00071 29.5 3.1 34 489-524 105-138 (140)
402 PF11848 DUF3368: Domain of un 39.8 1.1E+02 0.0024 20.9 5.2 34 489-522 12-45 (48)
403 PF14669 Asp_Glu_race_2: Putat 39.5 3.2E+02 0.0069 25.4 14.9 58 417-474 137-208 (233)
404 PF08225 Antimicrobial19: Pseu 39.3 18 0.0004 19.3 1.0 12 746-757 10-21 (23)
405 KOG2034 Vacuolar sorting prote 38.8 7E+02 0.015 29.2 23.6 300 56-372 366-687 (911)
406 KOG0991 Replication factor C, 38.7 3.7E+02 0.008 25.9 11.0 38 477-515 237-274 (333)
407 COG5108 RPO41 Mitochondrial DN 38.4 1.4E+02 0.0029 33.3 8.0 42 185-226 33-80 (1117)
408 KOG4077 Cytochrome c oxidase, 38.4 1.7E+02 0.0037 24.9 6.9 71 497-578 67-137 (149)
409 COG2909 MalT ATP-dependent tra 38.0 7.3E+02 0.016 29.2 23.6 140 320-472 367-522 (894)
410 PF11848 DUF3368: Domain of un 37.3 1.1E+02 0.0024 20.9 4.9 31 122-152 14-44 (48)
411 PF10579 Rapsyn_N: Rapsyn N-te 37.1 63 0.0014 24.9 3.9 13 556-568 49-61 (80)
412 PF10579 Rapsyn_N: Rapsyn N-te 37.0 93 0.002 24.0 4.8 46 491-536 18-65 (80)
413 PF12862 Apc5: Anaphase-promot 36.9 1.1E+02 0.0024 24.5 5.8 52 593-644 9-69 (94)
414 PF11838 ERAP1_C: ERAP1-like C 36.6 4.8E+02 0.01 26.6 18.7 61 447-507 169-229 (324)
415 PF08311 Mad3_BUB1_I: Mad3/BUB 35.9 2.6E+02 0.0057 24.0 8.2 43 497-539 81-124 (126)
416 TIGR01503 MthylAspMut_E methyl 35.0 3.1E+02 0.0066 29.4 9.7 46 293-341 69-114 (480)
417 PF14689 SPOB_a: Sensor_kinase 34.9 72 0.0016 23.3 3.9 29 615-643 22-50 (62)
418 cd08332 CARD_CASP2 Caspase act 34.8 75 0.0016 25.4 4.3 37 88-124 43-79 (90)
419 COG5159 RPN6 26S proteasome re 34.7 4.7E+02 0.01 26.0 12.7 49 487-535 11-66 (421)
420 PF11768 DUF3312: Protein of u 34.6 1.7E+02 0.0037 31.9 8.1 23 246-268 412-434 (545)
421 COG0790 FOG: TPR repeat, SEL1 34.2 4.9E+02 0.011 26.0 15.6 189 426-615 55-270 (292)
422 KOG0551 Hsp90 co-chaperone CNS 33.7 2.4E+02 0.0053 28.7 8.3 86 557-642 88-179 (390)
423 PF09477 Type_III_YscG: Bacter 33.6 2.8E+02 0.006 23.0 9.3 47 160-207 21-67 (116)
424 PF13762 MNE1: Mitochondrial s 33.5 3.4E+02 0.0074 24.0 12.0 50 478-527 78-128 (145)
425 KOG0292 Vesicle coat complex C 33.3 7E+02 0.015 29.2 12.5 131 455-610 651-781 (1202)
426 PRK13800 putative oxidoreducta 32.8 9.6E+02 0.021 29.0 27.1 254 366-642 624-878 (897)
427 KOG4077 Cytochrome c oxidase, 32.6 2.2E+02 0.0047 24.4 6.6 46 129-174 68-113 (149)
428 PRK13342 recombination factor 31.8 6.7E+02 0.014 26.9 18.1 48 481-528 229-279 (413)
429 COG1747 Uncharacterized N-term 31.6 7.2E+02 0.016 27.2 19.7 218 286-506 39-286 (711)
430 KOG3824 Huntingtin interacting 31.4 72 0.0016 31.6 4.3 57 562-618 128-186 (472)
431 PF06957 COPI_C: Coatomer (COP 31.0 2E+02 0.0044 30.6 7.9 42 573-614 289-332 (422)
432 PF12862 Apc5: Anaphase-promot 30.9 2.4E+02 0.0051 22.6 6.8 24 588-611 47-70 (94)
433 PF14689 SPOB_a: Sensor_kinase 30.7 76 0.0016 23.2 3.5 44 362-405 6-51 (62)
434 cd08332 CARD_CASP2 Caspase act 30.6 1.1E+02 0.0024 24.4 4.6 29 226-254 49-77 (90)
435 PF14669 Asp_Glu_race_2: Putat 30.4 4.5E+02 0.0098 24.5 14.5 56 283-338 137-206 (233)
436 KOG2908 26S proteasome regulat 30.3 3.2E+02 0.007 27.9 8.5 72 453-524 81-166 (380)
437 PF10345 Cohesin_load: Cohesin 30.3 8.7E+02 0.019 27.7 33.1 186 12-207 29-252 (608)
438 PF07163 Pex26: Pex26 protein; 30.2 4E+02 0.0087 26.5 9.0 21 117-137 125-145 (309)
439 PRK10564 maltose regulon perip 30.2 90 0.002 31.2 4.9 39 378-416 258-296 (303)
440 KOG4279 Serine/threonine prote 29.9 3.6E+02 0.0079 30.7 9.6 27 744-770 490-516 (1226)
441 PF07163 Pex26: Pex26 protein; 29.8 5.2E+02 0.011 25.8 9.6 17 384-400 90-106 (309)
442 PF08967 DUF1884: Domain of un 29.8 61 0.0013 24.9 2.8 27 675-701 7-33 (85)
443 PF11525 CopK: Copper resistan 29.8 19 0.00042 26.4 0.2 22 761-782 8-29 (73)
444 PF09670 Cas_Cas02710: CRISPR- 29.8 6.9E+02 0.015 26.4 12.4 54 387-441 141-198 (379)
445 PF07575 Nucleopor_Nup85: Nup8 29.7 8.5E+02 0.019 27.4 20.7 73 365-439 393-465 (566)
446 KOG0686 COP9 signalosome, subu 29.4 7E+02 0.015 26.3 12.3 111 181-293 151-285 (466)
447 PRK14700 recombination factor 29.2 5.8E+02 0.012 25.8 10.2 53 375-427 121-176 (300)
448 PF08424 NRDE-2: NRDE-2, neces 29.1 6.4E+02 0.014 25.9 11.3 72 298-370 51-126 (321)
449 KOG4642 Chaperone-dependent E3 28.8 5E+02 0.011 25.2 9.1 82 457-540 20-104 (284)
450 KOG3507 DNA-directed RNA polym 28.6 18 0.00038 25.5 -0.1 12 741-752 19-30 (62)
451 PF10255 Paf67: RNA polymerase 28.2 2E+02 0.0044 30.4 7.3 54 351-404 127-191 (404)
452 PF08311 Mad3_BUB1_I: Mad3/BUB 28.1 3.8E+02 0.0083 22.9 8.1 42 600-641 81-124 (126)
453 KOG3824 Huntingtin interacting 27.4 1.1E+02 0.0024 30.4 4.8 51 592-642 126-176 (472)
454 KOG0545 Aryl-hydrocarbon recep 27.2 4.1E+02 0.0088 25.9 8.2 53 593-645 241-293 (329)
455 PHA02537 M terminase endonucle 27.1 5.8E+02 0.013 24.7 9.9 26 489-514 93-119 (230)
456 PF14561 TPR_20: Tetratricopep 26.8 3.3E+02 0.0071 21.7 8.2 62 581-642 21-85 (90)
457 cd08323 CARD_APAF1 Caspase act 25.9 1.7E+02 0.0037 23.1 4.9 30 227-256 44-73 (86)
458 PF02184 HAT: HAT (Half-A-TPR) 25.7 1.6E+02 0.0035 18.3 3.5 24 597-621 2-25 (32)
459 PF04034 DUF367: Domain of unk 24.7 3.9E+02 0.0085 22.9 7.0 60 446-505 65-125 (127)
460 PF11817 Foie-gras_1: Foie gra 24.6 2.4E+02 0.0052 27.6 7.0 19 117-135 17-35 (247)
461 KOG2582 COP9 signalosome, subu 24.0 8.3E+02 0.018 25.4 15.4 19 155-173 193-211 (422)
462 PF10475 DUF2450: Protein of u 23.9 3.2E+02 0.0069 27.6 7.8 51 216-268 103-153 (291)
463 PF12968 DUF3856: Domain of Un 23.5 4.6E+02 0.01 22.3 7.3 68 312-405 54-128 (144)
464 PF08424 NRDE-2: NRDE-2, neces 23.4 8.2E+02 0.018 25.1 16.2 114 495-612 47-184 (321)
465 PRK11639 zinc uptake transcrip 23.4 3.3E+02 0.0071 24.8 7.0 41 115-155 30-70 (169)
466 COG5108 RPO41 Mitochondrial DN 23.3 2.9E+02 0.0064 30.8 7.4 48 382-429 33-82 (1117)
467 PRK11639 zinc uptake transcrip 23.3 2.6E+02 0.0057 25.5 6.4 60 506-567 18-77 (169)
468 cd00280 TRFH Telomeric Repeat 23.1 5.4E+02 0.012 23.8 7.9 31 453-483 117-147 (200)
469 cd08323 CARD_APAF1 Caspase act 22.8 2E+02 0.0044 22.7 4.8 29 94-122 43-71 (86)
470 PF10155 DUF2363: Uncharacteri 22.7 5E+02 0.011 22.3 11.2 110 95-206 5-124 (126)
471 COG0735 Fur Fe2+/Zn2+ uptake r 22.5 3.4E+02 0.0074 24.0 6.8 32 485-516 26-57 (145)
472 COG5191 Uncharacterized conser 22.4 1.8E+02 0.0038 29.2 5.2 75 548-622 105-182 (435)
473 KOG2063 Vacuolar assembly/sort 22.4 1.4E+03 0.03 27.3 24.2 26 214-239 507-532 (877)
474 PF04190 DUF410: Protein of un 22.2 7.7E+02 0.017 24.4 17.5 159 357-542 1-169 (260)
475 PF02847 MA3: MA3 domain; Int 21.8 2.3E+02 0.0051 23.4 5.5 21 383-403 8-28 (113)
476 KOG3807 Predicted membrane pro 21.0 8.9E+02 0.019 24.6 9.9 103 425-540 229-337 (556)
477 COG0735 Fur Fe2+/Zn2+ uptake r 20.8 4.6E+02 0.01 23.1 7.2 61 134-195 10-70 (145)
478 COG4976 Predicted methyltransf 20.5 1.7E+02 0.0037 28.0 4.5 55 593-647 6-60 (287)
479 KOG0991 Replication factor C, 20.5 7.9E+02 0.017 23.8 19.1 113 289-422 170-282 (333)
480 PF05053 Menin: Menin; InterP 20.4 5E+02 0.011 28.6 8.4 22 614-635 405-426 (618)
481 KOG4521 Nuclear pore complex, 20.0 1.7E+03 0.036 27.4 13.3 177 252-441 930-1132(1480)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3e-138 Score=1211.48 Aligned_cols=766 Identities=33% Similarity=0.564 Sum_probs=717.7
Q ss_pred CCCChHHHHHHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCC----CCChhhHHH
Q 003937 9 LISPLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMP----VKTLCSWNT 84 (785)
Q Consensus 9 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 84 (785)
+.+++.+++.+++++.+.|++++|..+++.|.+.|+.|+..+|..++..|.+.+.++.|..++..+. .++...+|+
T Consensus 47 ~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 47 SSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred cccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 3456678899999999999999999999999999999999999999999999999999999998754 468889999
Q ss_pred HHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHH
Q 003937 85 ILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAG 164 (785)
Q Consensus 85 li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 164 (785)
+|.+|++.|+++.|.++|++|++||+++||++|.+|++.|++++|+++|++|...|+.||.+||+.++++|+..+++..+
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~ 206 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG 206 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhc----CCC
Q 003937 165 KKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQM----IER 240 (785)
Q Consensus 165 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~----~~~ 240 (785)
.++|..+.+.|+.||..++|+||.+|+++|++++|.++|++|+.+|+++||++|.+|++.|+.++|.++|++| ..|
T Consensus 207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 334
Q ss_pred Cc-----------------------------------ccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHH
Q 003937 241 DV-----------------------------------VTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTL 285 (785)
Q Consensus 241 ~~-----------------------------------~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll 285 (785)
|. .+||+||.+|++.|++++|.++|++| . .||..+|++++
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m-~----~~d~~s~n~li 361 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-E----TKDAVSWTAMI 361 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhC-C----CCCeeeHHHHH
Confidence 44 45555555555666666666666666 3 35666666777
Q ss_pred HHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCC--CchHhHHHHHHHHHhcCCHH
Q 003937 286 SACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISY--LNVIAFTTLLDGYIKIGDIG 363 (785)
Q Consensus 286 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 363 (785)
.+|++.|+++.|.+++..|.+.|+.||..+++.++.+|++.|++++|.++++.+...+ ++..+|+.|+++|++.|+++
T Consensus 362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~ 441 (857)
T PLN03077 362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441 (857)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence 7777777777777777777777777777777777777777777777777777765553 47889999999999999999
Q ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCC
Q 003937 364 PARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGE 443 (785)
Q Consensus 364 ~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 443 (785)
+|.++|++|.++|+++||+||.+|+++|+.++|+.+|++|.. +++||..||+++|.+|++.|+++.++++|..+.+.|+
T Consensus 442 ~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999986 6999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 003937 444 ASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTA 523 (785)
Q Consensus 444 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 523 (785)
.++..++|+|+++|+++|++++|.++|+.+ .||+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||++++.+
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a 598 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHH
Confidence 999999999999999999999999999999 569999999999999999999999999999999999999999999999
Q ss_pred hhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 003937 524 CTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKI 603 (785)
Q Consensus 524 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 603 (785)
|++.|.+++|.++|+.|.+.+|+.|+..+|++|+++|+++|++++|.+++++|+++||..+|++|+.+|+.+|+.+.|+.
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~ 678 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGEL 678 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 99999999999999999966999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHH
Q 003937 604 AAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMA 683 (785)
Q Consensus 604 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (785)
+.+++++++|+++..|+.|+++|+..|+|++|.++++.|+++|++|+||+|||++++++|.|.+||.+||+.++||..++
T Consensus 679 ~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~ 758 (857)
T PLN03077 679 AAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLE 758 (857)
T ss_pred HHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcccCCCcccccCchhhHhhhhhhchHHHHHHHhhcCCCCCCcEEEEcccccccchhHHHHHHhhhcCeeE
Q 003937 684 KIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPENTTLRIMKNLRVCNDCHSAIKFICKLVDREI 763 (785)
Q Consensus 684 ~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~nl~~c~dch~~~~~~s~~~~~~~ 763 (785)
++..+|++.||+||+...+ ++++++|+..+++||||||+|||||+||+|+||||+||||||+|||+++||||++++|||
T Consensus 759 ~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i 837 (857)
T PLN03077 759 GFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREI 837 (857)
T ss_pred HHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEE
Confidence 9999999999999999877 457889999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcccccCCCccCCCC
Q 003937 764 VVRDATRFHHFKKGLCSCRD 783 (785)
Q Consensus 764 ~~~~~~~~h~~~~g~csc~~ 783 (785)
||||.+|||||+||+|||+|
T Consensus 838 ~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 838 SVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred EEecCCcceeCCCCcccCCC
Confidence 99999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.6e-123 Score=1058.77 Aligned_cols=613 Identities=38% Similarity=0.681 Sum_probs=602.1
Q ss_pred CCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCC-CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHH
Q 003937 107 NRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQ-VLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNS 185 (785)
Q Consensus 107 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 185 (785)
.++.++|+.+|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..|.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3577899999999999999999999999999864 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHH
Q 003937 186 LLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMF 265 (785)
Q Consensus 186 li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 265 (785)
|+++|+++|++++|.++|++|+ +||.++||++|.+|++.|++++|+++|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~-------------------------------~~~~~t~n~li~~~~~~g~~~~A~~lf 212 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP-------------------------------ERNLASWGTIIGGLVDAGNYREAFALF 212 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC-------------------------------CCCeeeHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999999999999999999 899999999999999999999999999
Q ss_pred HHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCc
Q 003937 266 ANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLN 345 (785)
Q Consensus 266 ~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 345 (785)
++| ...|+.||..||+.++.+|++.+..+.+.++|..+.+.|+.+|..++|+|+++|+++|
T Consensus 213 ~~M-~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g------------------ 273 (697)
T PLN03081 213 REM-WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG------------------ 273 (697)
T ss_pred HHH-HHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC------------------
Confidence 999 7889999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc
Q 003937 346 VIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSL 425 (785)
Q Consensus 346 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 425 (785)
++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.
T Consensus 274 ---------------~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~ 338 (697)
T PLN03081 274 ---------------DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338 (697)
T ss_pred ---------------CHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Confidence 88899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 003937 426 ASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERM 505 (785)
Q Consensus 426 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (785)
|+++.|.++|..+.+.|++||..++|+|+++|+++|++++|.++|++|..+ |+++||+||.+|+++|+.++|+++|++|
T Consensus 339 g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M 417 (697)
T PLN03081 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERM 417 (697)
T ss_pred cchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999876 9999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 003937 506 LELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAW 585 (785)
Q Consensus 506 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 585 (785)
.+.|+.||.+||++++.+|++.|.+++|.++|+.|.+++|+.|+..+|++|+++|+++|++++|.+++++|++.|+..+|
T Consensus 418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~ 497 (697)
T PLN03081 418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW 497 (697)
T ss_pred HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHH
Confidence 99999999999999999999999999999999999887899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEE
Q 003937 586 GSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVF 665 (785)
Q Consensus 586 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~ 665 (785)
++|+.+|+.+|+++.|+.+++++++++|++..+|+.|+++|++.|+|++|.++++.|+++|+++.||+||+++++.+|.|
T Consensus 498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f 577 (697)
T PLN03081 498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSF 577 (697)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCchhhHhhhhhhchHHHHHHHhhcCCCCCCcEEEEcccccc
Q 003937 666 GVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLISTPENTTLRIMKNLRVC 745 (785)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~nl~~c 745 (785)
.+||.+||+.++||..+.++..+|++.||.||+..++|++++++|+..+++||||||++||||++|+|+||||+||||||
T Consensus 578 ~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c 657 (697)
T PLN03081 578 FSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRIC 657 (697)
T ss_pred ccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhhcCeeEEEecCCcccccCCCccCCCCCC
Q 003937 746 NDCHSAIKFICKLVDREIVVRDATRFHHFKKGLCSCRDYW 785 (785)
Q Consensus 746 ~dch~~~~~~s~~~~~~~~~~~~~~~h~~~~g~csc~~~~ 785 (785)
+|||+|+||||++++|||||||.+|||||+||+|||+|||
T Consensus 658 ~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 658 KDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 9999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.9e-81 Score=733.37 Aligned_cols=678 Identities=24% Similarity=0.347 Sum_probs=602.4
Q ss_pred CCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC----CChhhHHHHHHHHHccCChhHHHHHHhhCC----CCCccHHH
Q 003937 43 GLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV----KTLCSWNTILSAYAKQGRLDLACEVFNLMP----NRDSVSWT 114 (785)
Q Consensus 43 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~----~~~~~~~~ 114 (785)
...++...+|.++..|++.|.+++|..+|+.|++ ++..+|+.++..+.+.+.++.|.++++.+. .++...+|
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHH
Confidence 3467888999999999999999999999999975 688899999999999999999999998654 46888999
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCC
Q 003937 115 TIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVG 194 (785)
Q Consensus 115 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g 194 (785)
++|.+|++.|+.+.|.++|++|. .||..+|+++|.+|++.|++++|.++++.|.+.|+.||.++|+.+++++++.+
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~ 201 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCcc
Confidence 99999999999999999999996 58999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhh
Q 003937 195 DEMMAKAVFDGMR----LKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLK 270 (785)
Q Consensus 195 ~~~~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~ 270 (785)
++..+.+++..|. .+|+.+||.||.+|++.|++++|.++|++|+++|+++||+||.+|++.|++++|+++|.+| .
T Consensus 202 ~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M-~ 280 (857)
T PLN03077 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM-R 280 (857)
T ss_pred chhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHH-H
Confidence 9999999998886 5689999999999999999999999999999999999999999999999999999999999 8
Q ss_pred cCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHH
Q 003937 271 DSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFT 350 (785)
Q Consensus 271 ~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~ 350 (785)
..|+.||..||+.++.+|++.++++.|.++|..+.+.|+.||..+||+|+++|+++|
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g----------------------- 337 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG----------------------- 337 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcC-----------------------
Confidence 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHH
Q 003937 351 TLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDH 430 (785)
Q Consensus 351 ~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 430 (785)
++++|.++|++|..+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.
T Consensus 338 ----------~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 407 (857)
T PLN03077 338 ----------SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDV 407 (857)
T ss_pred ----------CHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 003937 431 GKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGI 510 (785)
Q Consensus 431 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 510 (785)
|.++|+.+.+.|+.|+..++|+|+++|+++|++++|.++|++|..+ |+++||+||.+|++.|+.++|+++|++|.. ++
T Consensus 408 a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~ 485 (857)
T PLN03077 408 GVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK-DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TL 485 (857)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CC
Confidence 9999999999999999999999999999999999999999999887 999999999999999999999999999986 59
Q ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 003937 511 KPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLS 590 (785)
Q Consensus 511 ~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~ 590 (785)
+||.+||++++.+|++.|.++.+.+++..+.+ .|+.++..++++||++|+++|++++|.++|+++ .||.++||+||.
T Consensus 486 ~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~ 562 (857)
T PLN03077 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLR-TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLT 562 (857)
T ss_pred CCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-hCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHH
Confidence 99999999999999999999999999999997 899999999999999999999999999999999 799999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHh--hCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH-hCCCccCCceeEEEECCEEEEEee
Q 003937 591 ACRVHKNLDLGKIAAEKLLL--IEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK-YVGVKKTQGFSWVQIQNKVHVFGV 667 (785)
Q Consensus 591 ~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~~~~~~~~~~~~~~~ 667 (785)
+|.++|+.++|.++|++|.+ ..| |..||..++.+|++.|++++|.++|+.|. +.|+.|+.... .+.
T Consensus 563 ~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y----------~~l 631 (857)
T PLN03077 563 GYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY----------ACV 631 (857)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH----------HHH
Confidence 99999999999999999987 456 88999999999999999999999999998 78988764321 111
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCchhhHhhhhhhchHHHH-HHHhhcCCCCCCcEEEEccccccc
Q 003937 668 EDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLA-IAFGLISTPENTTLRIMKNLRVCN 746 (785)
Q Consensus 668 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la-~~~~~~~~~~~~~~~~~~nl~~c~ 746 (785)
.+.. ...+.++++.+.++++++.||..+|...+..+...+.+.. .|+.| ..+.+.+...+.-+.+..-....|
T Consensus 632 v~~l-----~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~-~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 632 VDLL-----GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVEL-GELAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred HHHH-----HhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHH-HHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 1100 0112355666777778899999998766665533222211 11111 123344443443333333356788
Q ss_pred chhHHHHHHhhhcCeeEEE-------ecCCcccccCCCccC
Q 003937 747 DCHSAIKFICKLVDREIVV-------RDATRFHHFKKGLCS 780 (785)
Q Consensus 747 dch~~~~~~s~~~~~~~~~-------~~~~~~h~~~~g~cs 780 (785)
+-.++.+....|..+.+-- --.+..|-|..|.-|
T Consensus 706 ~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~ 746 (857)
T PLN03077 706 KWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDES 746 (857)
T ss_pred ChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCC
Confidence 9999999988887763221 113578888766544
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.1e-68 Score=605.80 Aligned_cols=524 Identities=16% Similarity=0.206 Sum_probs=458.1
Q ss_pred CCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCCCh-----hhHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHH
Q 003937 43 GLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTL-----CSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTII 117 (785)
Q Consensus 43 g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li 117 (785)
...++...|..++..|++.|++++|.++|+.|+.++. ..++.++..|.+.|.+++|.++|+.|+.||..+||.+|
T Consensus 365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3456677888888888888999999999998876544 45567777788888999999999999888999999999
Q ss_pred HHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChH
Q 003937 118 VTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEM 197 (785)
Q Consensus 118 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~ 197 (785)
.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.||++|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999898899999999999999999999
Q ss_pred HHHHHHhcCC----CCCcchHHHHHHHHHhcCChHHHHHHhhhcC------CCCcccHHHHHHHHhhCCCchHHHHHHHH
Q 003937 198 MAKAVFDGMR----LKNVSSWNVVVSLHIHSGRLDLARAQFDQMI------ERDVVTWNSMIAGYSQNGYDFEALGMFAN 267 (785)
Q Consensus 198 ~A~~~~~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 267 (785)
+|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|. .||.++|++||.+|++.|++++|.++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999998886 5678889999999999999999999998883 57889999999999999999999999999
Q ss_pred hhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCC--CCc
Q 003937 268 MLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGIS--YLN 345 (785)
Q Consensus 268 ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~ 345 (785)
| .+.|+.|+..+|+.+|.+|++.|+++.|..++..|.+.|+.||..+|++++++|++.|++++|.++|++|... .|+
T Consensus 605 M-~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 605 I-HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred H-HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 9 8889999999999999999999999999999999999999999999999999999999999999999998765 468
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 003937 346 VIAFTTLLDGYIKIGDIGPARRIFDSLR----DRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSV 421 (785)
Q Consensus 346 ~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 421 (785)
..+|+++|.+|++.|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|...|+.||..||++++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 8999999999999999999999999995 589999999999999999999999999999999999999999999999
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----hcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHH
Q 003937 422 SSSLASLDHGKQIHASALRSGEASSLSVSNALITMYS----KAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEE 497 (785)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 497 (785)
|++.|+++.|.++|..|.+.|+.||..+|++|++++. +++...++...|+.+... +...| .++
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~-~~n~w------------~~~ 830 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQ-IENKW------------TSW 830 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc-cccch------------HHH
Confidence 9999999999999999999999999999999998743 344444444444333222 33344 356
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-
Q 003937 498 AIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM- 576 (785)
Q Consensus 498 A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 576 (785)
|+.+|++|++.|+.||.+||+.++.++...+..+.+..+++.|.. .+..|+..+|++||+++++. .++|..++++|
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~-~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGI-SADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhcc-CCCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 999999999999999999999999888888899999999888864 57888899999999998543 46899999999
Q ss_pred --CCCCCHH
Q 003937 577 --PLEPDVV 583 (785)
Q Consensus 577 --~~~p~~~ 583 (785)
++.|+..
T Consensus 908 ~~Gi~p~~~ 916 (1060)
T PLN03218 908 SLGVVPSVS 916 (1060)
T ss_pred HcCCCCCcc
Confidence 7778765
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.3e-67 Score=600.43 Aligned_cols=512 Identities=20% Similarity=0.261 Sum_probs=427.5
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHhhCCCCCcc-----HHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHH
Q 003937 77 KTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSV-----SWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSV 151 (785)
Q Consensus 77 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l 151 (785)
++...|..++..+++.|++++|.++|++|+.++.. .++.++.+|.+.|..++|+++|+.|.. ||..||+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 56778888889999999999999999999876544 455677789999999999999998863 899999999
Q ss_pred HHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 003937 152 LASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLAR 231 (785)
Q Consensus 152 l~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~ 231 (785)
|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++|++++|.++|++|...+.
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv-------------------- 503 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV-------------------- 503 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC--------------------
Confidence 999999999999999999999999999999999999999999999999999999986555
Q ss_pred HHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHH--hcC
Q 003937 232 AQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIR--TEF 309 (785)
Q Consensus 232 ~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~ 309 (785)
.||.++|++||.+|++.|++++|+++|++| ...|+.||..||+.+|.+|++.|+++.|.+++..|.+ .|+
T Consensus 504 -------~PdvvTynaLI~gy~k~G~~eeAl~lf~~M-~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi 575 (1060)
T PLN03218 504 -------EANVHTFGALIDGCARAGQVAKAFGAYGIM-RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575 (1060)
T ss_pred -------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCC
Confidence 789999999999999999999999999999 8889999999999999999999999999999998876 567
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHH
Q 003937 310 DATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQ 389 (785)
Q Consensus 310 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 389 (785)
.||..+|++||++|+++|++++|.++|++|...+ ..++..+||++|.+|++
T Consensus 576 ~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~g-----------------------------i~p~~~tynsLI~ay~k 626 (1060)
T PLN03218 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYN-----------------------------IKGTPEVYTIAVNSCSQ 626 (1060)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----------------------------CCCChHHHHHHHHHHHh
Confidence 8888888888888888885555544444443322 13566788888888888
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003937 390 NGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRV 469 (785)
Q Consensus 390 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 469 (785)
.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|..|.+.|+.|+..+|++||++|+++|++++|.++
T Consensus 627 ~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 627 KGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhcc---cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCC
Q 003937 470 FNLIH---WRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKI 546 (785)
Q Consensus 470 ~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 546 (785)
|++|. ..||+++||+||.+|++.|+.++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|++|.+ .|+
T Consensus 707 f~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k-~Gi 785 (1060)
T PLN03218 707 YEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE-DGI 785 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-cCC
Confidence 88875 34788888888888888888888888888888888888888888888888888888888888888876 688
Q ss_pred CCCchhHHHHHHHHh----hcC-------------------CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHH
Q 003937 547 KPTPSHFASMVDLLG----RAG-------------------LLQEAYNFIENM---PLEPDVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 547 ~p~~~~~~~li~~~~----~~g-------------------~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~ 600 (785)
.||..+|++|++++. +++ ..++|..+|++| ++.||..||++++.++...+..+.
T Consensus 786 ~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~ 865 (1060)
T PLN03218 786 KPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATL 865 (1060)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHH
Confidence 888888888876632 222 346799999999 789999999999987788888898
Q ss_pred HHHHHHHHHh-hCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCc
Q 003937 601 GKIAAEKLLL-IEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQG 652 (785)
Q Consensus 601 a~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~ 652 (785)
+..+++.+.. -.+.+..+|.+|++++.+. .++|..++++|.+.|+.|+..
T Consensus 866 ~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 866 RNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8888887653 3455788999999998432 368999999999999987654
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-67 Score=602.79 Aligned_cols=466 Identities=27% Similarity=0.409 Sum_probs=449.8
Q ss_pred HHHHHHHHhhcCCCcchHHHHHHHHHHcC-CCCchhHHHHHHHHHHhcCChhHHHHHhhcCC----CCChhhHHHHHHHH
Q 003937 15 FYAHLLQSNLKSRNPFVGKLVHARIIKCG-LHLSVFLKNSLMNFYAKTESISYAKKVFDEMP----VKTLCSWNTILSAY 89 (785)
Q Consensus 15 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~li~~~ 89 (785)
+++.+|..+.+.|++++|.++|..|...+ ..|+..+|+.++.+|++.++++.|.+++..|. .||..+||.++.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 78999999999999999999999998865 78999999999999999999999999999986 58999999999999
Q ss_pred HccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 003937 90 AKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHS 169 (785)
Q Consensus 90 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 169 (785)
++.|++++|.++|++|++||.++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.++++|.
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHH
Q 003937 170 FVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMI 249 (785)
Q Consensus 170 ~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li 249 (785)
.+.+.|+.+|..++|+||++|+++|++++|.++|++|+ ++|+++||+||
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------------------------------~~~~vt~n~li 297 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-------------------------------EKTTVAWNSML 297 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-------------------------------CCChhHHHHHH
Confidence 99999999999999999999999999999999999998 88999999999
Q ss_pred HHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 003937 250 AGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGV 329 (785)
Q Consensus 250 ~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 329 (785)
.+|++.|++++|+++|++| ...|+.||..||++++.+|++.|+++.|.++|..|.+.|+.+|..++|+|+++|+++|
T Consensus 298 ~~y~~~g~~~eA~~lf~~M-~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G-- 374 (697)
T PLN03081 298 AGYALHGYSEEALCLYYEM-RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG-- 374 (697)
T ss_pred HHHHhCCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC--
Confidence 9999999999999999999 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 003937 330 EIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPK 409 (785)
Q Consensus 330 ~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 409 (785)
++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.
T Consensus 375 -------------------------------~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~ 423 (697)
T PLN03081 375 -------------------------------RMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423 (697)
T ss_pred -------------------------------CHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 8889999999999999999999999999999999999999999999999
Q ss_pred CCHhhHHHHHHHHhccCchHHHHHHHHHHHH-hCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHH
Q 003937 410 PNNYTLSAMLSVSSSLASLDHGKQIHASALR-SGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVA 488 (785)
Q Consensus 410 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~ 488 (785)
||..||+++|.+|++.|.+++|.++|..|.+ .|+.|+..+|+.++++|+++|++++|.++|++|+.+|+..+|++|+.+
T Consensus 424 Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a 503 (697)
T PLN03081 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTA 503 (697)
T ss_pred CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999986 699999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP 548 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 548 (785)
|..+|+.+.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+ .|+.+
T Consensus 504 ~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~-~g~~k 561 (697)
T PLN03081 504 CRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR-KGLSM 561 (697)
T ss_pred HHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH-cCCcc
Confidence 9999999999999999975 6776 45999999999999999999999999987 67654
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=3.5e-34 Score=343.68 Aligned_cols=621 Identities=13% Similarity=0.042 Sum_probs=288.8
Q ss_pred ChHHHHHHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCC---ChhhHHHHHHH
Q 003937 12 PLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVK---TLCSWNTILSA 88 (785)
Q Consensus 12 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~ 88 (785)
++..+..+...+...|+++.|...++.+.+.... +...+......+...|++++|...|+.+.+. +...+..+...
T Consensus 226 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~ 304 (899)
T TIGR02917 226 NPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGAS 304 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4455666666667777777777777777665432 2223333333344556666666666554321 11122233334
Q ss_pred HHccCChhHHHHHHhhCCC---CCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHH
Q 003937 89 YAKQGRLDLACEVFNLMPN---RDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGK 165 (785)
Q Consensus 89 ~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 165 (785)
+...|++++|...|+...+ .+...+..+...+.+.|++++|...+..+.... +.+...+..+...+...|++++|.
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4455555555555554432 123334444455555555555555555554332 223344444445555555555555
Q ss_pred HHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHhhhcCC---
Q 003937 166 KVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLK---NVSSWNVVVSLHIHSGRLDLARAQFDQMIE--- 239 (785)
Q Consensus 166 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~~~~--- 239 (785)
++++.+.+.. +.+...+..+...+...|+.++|.+.|+.+... +...+..++..+.+.|++++|.++++.+..
T Consensus 384 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 462 (899)
T TIGR02917 384 EYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQP 462 (899)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 5555554433 223334444444455555555555555443311 122333444444444555555544444421
Q ss_pred CCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCC--------------------------------CCCChhhHHHHHHH
Q 003937 240 RDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSS--------------------------------LKPDKFTLASTLSA 287 (785)
Q Consensus 240 ~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g--------------------------------~~p~~~t~~~ll~~ 287 (785)
.+..+|+.+...+...|++++|...|++++.... .+.+..++..+...
T Consensus 463 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 542 (899)
T TIGR02917 463 DNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGL 542 (899)
T ss_pred CCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 2333444444444444555555555544421110 11123334444444
Q ss_pred HhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHH
Q 003937 288 CANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPAR 366 (785)
Q Consensus 288 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 366 (785)
+...|+.+.+...+..+.+.+ +.+...+..++..|.+.|++++|..+++++....| +..+|..++..|.+.|++++|.
T Consensus 543 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 621 (899)
T TIGR02917 543 YLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAV 621 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 444444444444444444332 22233344444445555555555555544433322 3444455555555555555555
Q ss_pred HHHHhcCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCC
Q 003937 367 RIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGE 443 (785)
Q Consensus 367 ~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 443 (785)
..|+.+.+ .+...|..+...|.+.|++++|...|+++.... +.+..++..+...+...|+++.|..++..+.+..
T Consensus 622 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 699 (899)
T TIGR02917 622 SSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH- 699 (899)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 55544432 133344444444555555555555555444321 1123344444444444555555555554444433
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcc-cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003937 444 ASSLSVSNALITMYSKAGNINAARRVFNLIH-WRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLT 522 (785)
Q Consensus 444 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 522 (785)
+.+...+..+...|.+.|++++|.+.|+.+. ..|+..++..++..+.+.|+.++|.+.++++.+.. +.+...+..+..
T Consensus 700 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~ 778 (899)
T TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAE 778 (899)
T ss_pred cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 2233344444445555555555555554432 12333444444455555555555555555554421 222334444444
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 600 (785)
.|...|++++|..+|+++.+ ..+++...++.+...+.+.|+ .+|+++++++ ...| +..++..+...+...|++++
T Consensus 779 ~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 855 (899)
T TIGR02917 779 LYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADR 855 (899)
T ss_pred HHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHH
Confidence 55555555555555555543 122334444555555555555 4455555444 2223 23344444444555555555
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
|...++++++.+|.++.++..++.+|.+.|++++|.+++++|
T Consensus 856 A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 856 ALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555554
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.1e-33 Score=339.39 Aligned_cols=625 Identities=12% Similarity=0.035 Sum_probs=440.1
Q ss_pred CChHHHHHHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhhHHHHHH
Q 003937 11 SPLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV--K-TLCSWNTILS 87 (785)
Q Consensus 11 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~ 87 (785)
.+...+..+...+...|+++.|...++...+.. +.+..++..+...+...|++++|...++.+.+ | +...+.....
T Consensus 191 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 269 (899)
T TIGR02917 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKAL 269 (899)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 345677777888888999999999999998876 45678888999999999999999999998753 2 3333444444
Q ss_pred HHHccCChhHHHHHHhhCCCCC---ccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHH
Q 003937 88 AYAKQGRLDLACEVFNLMPNRD---SVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAG 164 (785)
Q Consensus 88 ~~~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 164 (785)
.+.+.|++++|...|+++.+.+ ...+..+...+...|++++|...|....+.. +.+...+..+...+...|+++.|
T Consensus 270 ~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 270 VDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHH
Confidence 5678899999999998876532 3345556667888999999999999998753 33456677788888999999999
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHhhhcCCC-
Q 003937 165 KKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRL---KNVSSWNVVVSLHIHSGRLDLARAQFDQMIER- 240 (785)
Q Consensus 165 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~- 240 (785)
.+.+..+.+.. +.+...+..+...|.+.|++++|.+.|+++.. .+...|..+...+...|++++|.+.|+.+...
T Consensus 349 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 427 (899)
T TIGR02917 349 IATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD 427 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC
Confidence 99999998776 55778899999999999999999999998763 35567888999999999999999999988543
Q ss_pred --CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHH
Q 003937 241 --DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNA 318 (785)
Q Consensus 241 --~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 318 (785)
+...+..++..+.+.|++++|+.+++++.. ..+++..++..+...+...|+++.|.+.+..+.+.. +.+...+..
T Consensus 428 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 504 (899)
T TIGR02917 428 PELGRADLLLILSYLRSGQFDKALAAAKKLEK--KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAAN 504 (899)
T ss_pred CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHH
Confidence 345677788999999999999999999943 334566778888888889999999999998887654 334455666
Q ss_pred HHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChh
Q 003937 319 LISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNK 394 (785)
Q Consensus 319 li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 394 (785)
+...|...|++++|.+.|+++....| +..++..+...+.+.|+.++|...|+++.. .+...+..++..|.+.|+++
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHH
Confidence 77777777777777777777655444 556666666666666666666666665532 23334444555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhC--------------------------------
Q 003937 395 DAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSG-------------------------------- 442 (785)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-------------------------------- 442 (785)
+|+.+++++.... +.+..++..+..++...|+++.|...+..+.+..
T Consensus 585 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 585 KALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555554321 2233444444445555555555555555444432
Q ss_pred -CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003937 443 -EASSLSVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVG 519 (785)
Q Consensus 443 -~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 519 (785)
.+.+...+..++..+...|++++|.++++.+... ++...|..+...+...|++++|++.|+++... .|+..++..
T Consensus 664 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 741 (899)
T TIGR02917 664 LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIK 741 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHH
Confidence 1223344444444444455555555555444321 23444555555666666666666666666653 344455555
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKN 597 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 597 (785)
+..++.+.|++++|.+.++.+.+ ..+.+...+..+...|.+.|+.++|.+.|+++ ...| +..+++.+...+...|+
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence 66666666777777766666654 23445666777777777777888887777776 2233 56677777777777777
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003937 598 LDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 598 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 647 (785)
++|+..+++++++.|+++.++..++.+|...|++++|.++++++.+.+.
T Consensus 820 -~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 820 -PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred -HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 6688888888888887777788888888888888888888888876543
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=2.3e-33 Score=234.05 Aligned_cols=106 Identities=61% Similarity=1.027 Sum_probs=98.0
Q ss_pred ceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCchhhH--------hhhhhhchHHHHH
Q 003937 652 GFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVK--------EQMLRHHSEKLAI 723 (785)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~e~la~ 723 (785)
|+||+++ |.|.+||.+||+. ++..++...||.|++....|+++++++ +..+..||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6899976 9999999999987 566778889999999999998877766 6688999999999
Q ss_pred HHhhcCCCCCCcEEEEccc-ccccchhHHHHHHhhhcCeeEEEecCCcccccC
Q 003937 724 AFGLISTPENTTLRIMKNL-RVCNDCHSAIKFICKLVDREIVVRDATRFHHFK 775 (785)
Q Consensus 724 ~~~~~~~~~~~~~~~~~nl-~~c~dch~~~~~~s~~~~~~~~~~~~~~~h~~~ 775 (785)
||||+++ +|+||+ |||+|||+|+|+||++++|+|+|||++|||||+
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=8.2e-24 Score=253.95 Aligned_cols=623 Identities=12% Similarity=0.031 Sum_probs=459.7
Q ss_pred ChHHHHHHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC--CChh-h-------
Q 003937 12 PLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV--KTLC-S------- 81 (785)
Q Consensus 12 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~-~------- 81 (785)
+...+....+-+...++.+.|.+.+.++.... +.++.++..+...+.+.|+.++|.+.+++..+ |+.. .
T Consensus 27 ~~~~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~ 105 (1157)
T PRK11447 27 AQQQLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTM 105 (1157)
T ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 44557777888889999999999999998775 44688889999999999999999999999864 3222 1
Q ss_pred ---------HHHHHHHHHccCChhHHHHHHhhCCCCCccHHH----HHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhH
Q 003937 82 ---------WNTILSAYAKQGRLDLACEVFNLMPNRDSVSWT----TIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTV 148 (785)
Q Consensus 82 ---------~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~ 148 (785)
...+...+.+.|++++|.+.|+...+.+..... .........|+.++|++.|+++.+.. +-+....
T Consensus 106 ~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~ 184 (1157)
T PRK11447 106 LLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLR 184 (1157)
T ss_pred HhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHH
Confidence 123344688999999999999988653222111 11111224589999999999998753 2245566
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHHhCCCC----------------C---hhHHHHHHHHHHhCCChHHHHHHHhcCCC-
Q 003937 149 TSVLASCTALGDLSAGKKVHSFVVKTGLSG----------------C---VNVTNSLLNMYAKVGDEMMAKAVFDGMRL- 208 (785)
Q Consensus 149 ~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~----------------~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 208 (785)
..+...+...|+.++|.+.++.+.+..... + ...+...+..+-.....+.|...+.....
T Consensus 185 ~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~ 264 (1157)
T PRK11447 185 NTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ 264 (1157)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh
Confidence 777788889999999999999987643100 0 01112222222222334455555544321
Q ss_pred -CCcc-hHHHHHHHHHhcCChHHHHHHhhhcCC--C-CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHH-
Q 003937 209 -KNVS-SWNVVVSLHIHSGRLDLARAQFDQMIE--R-DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLA- 282 (785)
Q Consensus 209 -~~~~-~~~~li~~~~~~g~~~~A~~l~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~- 282 (785)
.|.. ........+...|++++|...|++..+ | +...+..+...|.+.|++++|+..|++.+....-.++...+.
T Consensus 265 ~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ 344 (1157)
T PRK11447 265 LADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES 344 (1157)
T ss_pred ccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence 1111 122345677889999999999998844 3 667888999999999999999999999854432222221111
Q ss_pred -----------HHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHH
Q 003937 283 -----------STLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFT 350 (785)
Q Consensus 283 -----------~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 350 (785)
..-..+.+.|+++.|...+..+++.. +.+...+..+...|...|++++|++.|++.....| +...+.
T Consensus 345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 12335668899999999999999875 34556777889999999999999999999777666 566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCC------------HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HhhHHH
Q 003937 351 TLLDGYIKIGDIGPARRIFDSLRDRD------------VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPN-NYTLSA 417 (785)
Q Consensus 351 ~li~~~~~~g~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ 417 (785)
.+...|. .++.++|...++.+.... ...+..+...+...|++++|++.|++.++. .|+ ...+..
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~ 500 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYR 500 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 7877775 467899999998876421 123455667788999999999999999875 454 445566
Q ss_pred HHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC---CChh---------HHHHH
Q 003937 418 MLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR---QETV---------SWTSM 485 (785)
Q Consensus 418 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---p~~~---------~~~~l 485 (785)
+...+.+.|++++|...++.+++.. +.+......+...+.+.|+.++|...++.+... ++.. .+..+
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 7778999999999999999998754 334444555566678899999999999987532 1111 12345
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCC
Q 003937 486 IVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGL 565 (785)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 565 (785)
...+...|+.++|+++++. .+++...+..+...+...|++++|...|+...+. -+.+...+..++..|...|+
T Consensus 580 a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 6678899999999999872 2344556777888999999999999999999862 23457788899999999999
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc------hhHHHHHHHHHhcCChHHHHH
Q 003937 566 LQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS------GAYSALCNLYSSCGKWEDAAN 637 (785)
Q Consensus 566 ~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~ 637 (785)
.++|++.++.. ...|+ ...+..+..++...|+.++|...+++++...|+++ ..+..++.++...|++++|..
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~ 732 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALE 732 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999987 34554 55677788888999999999999999999876544 356677999999999999999
Q ss_pred HHHHHH-hCCCc
Q 003937 638 IRKSMK-YVGVK 648 (785)
Q Consensus 638 ~~~~m~-~~g~~ 648 (785)
.+++.. ..|+.
T Consensus 733 ~y~~Al~~~~~~ 744 (1157)
T PRK11447 733 TYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHhhcCCC
Confidence 998875 44554
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=7.8e-23 Score=245.55 Aligned_cols=583 Identities=12% Similarity=0.072 Sum_probs=433.6
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCC---CChhhHHHHHHHHHccCChhHHHHHHhhCCC--CCcc-HH-----------
Q 003937 51 KNSLMNFYAKTESISYAKKVFDEMPV---KTLCSWNTILSAYAKQGRLDLACEVFNLMPN--RDSV-SW----------- 113 (785)
Q Consensus 51 ~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~-~~----------- 113 (785)
.-..+..+...++.+.|++.++++.. .|...+..+...+.+.|+.++|.+.+++..+ |+.. .+
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~ 110 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTP 110 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCC
Confidence 33445667788999999999998753 4677888899999999999999999998865 3322 22
Q ss_pred -----HHHHHHHHhCCChhHHHHHHHHhHHCCCCCChh-hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHH
Q 003937 114 -----TTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQF-TVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLL 187 (785)
Q Consensus 114 -----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li 187 (785)
..+...+.+.|++++|+..|+.+.+.. +|+.. ............|+.++|.+.++.+++.. +.+...+..+.
T Consensus 111 ~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA 188 (1157)
T PRK11447 111 EGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLA 188 (1157)
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 223446788999999999999998643 33322 11112222335689999999999999985 55777888999
Q ss_pred HHHHhCCChHHHHHHHhcCCCCCc------chH-----------------HHHHHHHHhcCChHHHHHHhhhcCC--CCc
Q 003937 188 NMYAKVGDEMMAKAVFDGMRLKNV------SSW-----------------NVVVSLHIHSGRLDLARAQFDQMIE--RDV 242 (785)
Q Consensus 188 ~~~~~~g~~~~A~~~~~~m~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~l~~~~~~--~~~ 242 (785)
..+...|+.++|.+.|+++..... ..| ...+..+-.....+.|...+..... .|.
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 999999999999999998753221 111 1112222222334455555544321 111
Q ss_pred c-cHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCc-chH---
Q 003937 243 V-TWNSMIAGYSQNGYDFEALGMFANMLKDSSLKP-DKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATG-PVG--- 316 (785)
Q Consensus 243 ~-~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~--- 316 (785)
. ........+...|++++|+..|++.+.. .| +...+..+-.++.+.|+++.|...+...++....... ..+
T Consensus 269 ~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~---~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 269 AFRARAQGLAAVDSGQGGKAIPELQQAVRA---NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 1 1123356677899999999999998543 35 5567777888889999999999999999876543221 111
Q ss_pred ---------HHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHH
Q 003937 317 ---------NALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAM 383 (785)
Q Consensus 317 ---------~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~l 383 (785)
..+...+.+.|++++|...|++.....| +...+..+...+.+.|++++|++.|++..+ .+...+..+
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 2234567899999999999999777666 677888999999999999999999998875 345567677
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCC--------CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003937 384 LVGYEQNGLNKDAVELFRSMVREGPKP--------NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALIT 455 (785)
Q Consensus 384 i~~~~~~g~~~~A~~~~~~m~~~g~~p--------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 455 (785)
...|. .++.++|+.+++.+....... ....+......+...|++++|.+.+..+++.. +.+..++..+..
T Consensus 426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~ 503 (1157)
T PRK11447 426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 77664 467899999887654321100 01123445566778999999999999998864 335667788999
Q ss_pred HHHhcCCHHHHHHHHHhccc-CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHh
Q 003937 456 MYSKAGNINAARRVFNLIHW-RQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI---------TYVGVLTAC 524 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------t~~~ll~a~ 524 (785)
.|.+.|++++|...|+++.. .| +...+..+...+...|+.++|+..++++......++.. .+......+
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999998743 23 45556566666778999999999998865432222221 123455678
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 003937 525 THGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGK 602 (785)
Q Consensus 525 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 602 (785)
...|+.++|..+++. .+++...+..+.+.|.+.|+.++|++.+++. ...| +...+..+...+...|+.++|+
T Consensus 584 ~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 899999999999872 2445667788999999999999999999988 4566 4778999999999999999999
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 603 IAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 603 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
..++++.+..|+++..+..++.++...|++++|.++++++....
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999999987654
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=4e-21 Score=219.76 Aligned_cols=593 Identities=11% Similarity=-0.017 Sum_probs=395.3
Q ss_pred hcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhhHHHHHHHHHccCChhHHHHH
Q 003937 24 LKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV--KTLCSWNTILSAYAKQGRLDLACEV 101 (785)
Q Consensus 24 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~ 101 (785)
...|++++|...|++.++..+.. ..++..|...|.+.|++++|+..+++..+ |+-..+..++..+ ++.++|..+
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHH
Confidence 33599999999999999887554 88999999999999999999999999875 3323333333333 889999999
Q ss_pred HhhCCC--C-CccHHHHHHHH--------HHhCCChhHHHHHHHHhHHCCCCCChhhHHHH-HHHHhccCChhHHHHHHH
Q 003937 102 FNLMPN--R-DSVSWTTIIVT--------YNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSV-LASCTALGDLSAGKKVHS 169 (785)
Q Consensus 102 f~~m~~--~-~~~~~~~li~~--------~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l-l~~~~~~g~~~~a~~~~~ 169 (785)
++++.. | +...+..+... |.+.+ +|.+.++ .......|+..+.... .+.+...++++.+..++.
T Consensus 131 ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~e---qAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~ 206 (987)
T PRK09782 131 VEELLAQQKACDAVPTLRCRSEVGQNALRLAQLP---VARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYN 206 (987)
T ss_pred HHHHHHhCCCChhHHHHHHHHhhccchhhhhhHH---HHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999864 3 33344444444 66664 4444444 3333344556655555 899999999999999999
Q ss_pred HHHHhCCCCChhHHHHHHHHHHh-CCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCC-----CCcc
Q 003937 170 FVVKTGLSGCVNVTNSLLNMYAK-VGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIE-----RDVV 243 (785)
Q Consensus 170 ~~~~~g~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-----~~~~ 243 (785)
.+.+.+ +.+......|-.+|.. .++ +.|..+++.....+...+..++..|.+.|+.++|.++++++.. |...
T Consensus 207 ~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~ 284 (987)
T PRK09782 207 EARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEK 284 (987)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccH
Confidence 999998 4456667777778888 477 8899988765566888999999999999999999999998832 2222
Q ss_pred cHHHH------------------------------HHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHH--hcc
Q 003937 244 TWNSM------------------------------IAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSAC--ANL 291 (785)
Q Consensus 244 ~~~~l------------------------------i~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~--~~~ 291 (785)
+|--+ +..+.+.++++-+.++. ...|..... .+... ...
T Consensus 285 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~--~~r~~~~~~~ 355 (987)
T PRK09782 285 SWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL-------ATLPANEML--EERYAVSVAT 355 (987)
T ss_pred HHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh-------cCCCcchHH--HHHHhhcccc
Confidence 22221 23334444444333221 123333322 22222 223
Q ss_pred cchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC----chHhHHHHHHHHHhcCC---HHH
Q 003937 292 EKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL----NVIAFTTLLDGYIKIGD---IGP 364 (785)
Q Consensus 292 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~---~~~ 364 (785)
+...++.+.+..+.+.. +.+....--+.-...+.|+.++|.++|++.-..+. +...-+-++..|.+.+. ..+
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 44555555555555442 22344444444556778888888888888655322 33445567777777665 222
Q ss_pred HHHH-------------------------HHhcCC---C--CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhh
Q 003937 365 ARRI-------------------------FDSLRD---R--DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYT 414 (785)
Q Consensus 365 A~~~-------------------------f~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 414 (785)
+..+ +..... + +...|..+...+.. ++.++|+..|.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 2222 111111 2 45566666666665 7777888877776653 466544
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-CCh-hHHHHHHHHHHHc
Q 003937 415 LSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-QET-VSWTSMIVALAQH 492 (785)
Q Consensus 415 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~~-~~~~~li~~~~~~ 492 (785)
...+..++...|+++.|...+..+... +|+...+..+...+.+.|++++|...|++.... |+. ..+..+.......
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 334444456788888888888776543 333344556667777888888888888766433 222 2222223333445
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHH
Q 003937 493 GLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYN 571 (785)
Q Consensus 493 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~ 571 (785)
|++++|+..|++..+ +.|+...+..+..++.+.|++++|...+++..+ ..|+ ...++.+...+...|+.++|++
T Consensus 590 Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 590 GQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred CCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888887 567766777777888888888888888888765 2343 5566777778888888888888
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 572 FIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 572 ~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
.+++. ...| +...+..+..++...|++++|+..++++++++|++..+.....++.....+++.|.+-+++.-...
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88776 4556 466777888888888888888888888888888877777778888888888887777666654443
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.93 E-value=6.6e-20 Score=209.88 Aligned_cols=565 Identities=11% Similarity=-0.005 Sum_probs=397.2
Q ss_pred HhcCChhHHHHHhhcCCC---CChhhHHHHHHHHHccCChhHHHHHHhhCCCCCc--cHHHHHHHHHHhCCChhHHHHHH
Q 003937 59 AKTESISYAKKVFDEMPV---KTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDS--VSWTTIIVTYNEIGRFKNAIRMF 133 (785)
Q Consensus 59 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~--~~~~~li~~~~~~g~~~~a~~~~ 133 (785)
...|++++|...|++..+ .+..++..|...|.+.|+.++|+..+++..+.++ ..|..++..+ +++.+|..++
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHH
Confidence 345999999999999864 3567889999999999999999999998876332 3333333333 8999999999
Q ss_pred HHhHHCCCCCC-hhhHHHHHHHH-----hccCChhHHHHHHHHHHHhCCCCChhHHHHH-HHHHHhCCChHHHHHHHhcC
Q 003937 134 VEMVQDQVLPT-QFTVTSVLASC-----TALGDLSAGKKVHSFVVKTGLSGCVNVTNSL-LNMYAKVGDEMMAKAVFDGM 206 (785)
Q Consensus 134 ~~m~~~g~~p~-~~t~~~ll~~~-----~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m 206 (785)
+++... .|+ ..++..+.... ....+.+.+.+.++ .......|+..+.... ...|.+.|++++|.+.+.++
T Consensus 132 e~l~~~--~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L 208 (987)
T PRK09782 132 EELLAQ--QKACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEA 208 (987)
T ss_pred HHHHHh--CCCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999985 354 33444444330 11234466777666 4334444456655555 89999999999999999998
Q ss_pred CCCC---cchHHHHHHHHHh-cCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCC-CCCChhhH
Q 003937 207 RLKN---VSSWNVVVSLHIH-SGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSS-LKPDKFTL 281 (785)
Q Consensus 207 ~~~~---~~~~~~li~~~~~-~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g-~~p~~~t~ 281 (785)
.+.+ ..-...|...|.+ .++ +++..+++...+.+...+..+...|.+.|+.++|..+++++ +..- -.|+..++
T Consensus 209 ~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~-~~~~~~~~~~~~~ 286 (987)
T PRK09782 209 RQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIEN-KPLFTTDAQEKSW 286 (987)
T ss_pred HhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhC-cccccCCCccHHH
Confidence 8553 3346667778888 477 99999988766678899999999999999999999999998 4432 23555555
Q ss_pred HHHHHHHhcc------------------------------cchhhHHHHHHHHHHhcCCCCcchHHHHHHHHH-hcCChH
Q 003937 282 ASTLSACANL------------------------------EKLKLGKQIHAYIIRTEFDATGPVGNALISCYA-KVGGVE 330 (785)
Q Consensus 282 ~~ll~~~~~~------------------------------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~-~~g~~~ 330 (785)
.-++.-.... +.++.++++ ....|.... -.+-.++. ..+...
T Consensus 287 ~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~r~~~~~~~~~~~ 359 (987)
T PRK09782 287 LYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKL------LATLPANEM-LEERYAVSVATRNKA 359 (987)
T ss_pred HHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHH------hcCCCcchH-HHHHHhhccccCchh
Confidence 4444333222 111111111 012222221 11111121 124444
Q ss_pred HHHHHHHHhCCC-CCchHhHHHHHHHHHhcCCHHHHHHHHHhcCC-C-----CHhHHHHHHHHHHHcCC---hhHHHHH-
Q 003937 331 IAQKIVEQSGIS-YLNVIAFTTLLDGYIKIGDIGPARRIFDSLRD-R-----DVVAWTAMLVGYEQNGL---NKDAVEL- 399 (785)
Q Consensus 331 ~A~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~---~~~A~~~- 399 (785)
++.+.++.+-.. +.+......+.-...+.|+.++|.++|....+ + +...-+-++..|.+.+. ..+++.+
T Consensus 360 ~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~ 439 (987)
T PRK09782 360 EALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILS 439 (987)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhc
Confidence 555555544444 33555555566667789999999999998765 2 23344467777777766 3444333
Q ss_pred -----------HH----------HHHH-cCCCCC---HhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHH
Q 003937 400 -----------FR----------SMVR-EGPKPN---NYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALI 454 (785)
Q Consensus 400 -----------~~----------~m~~-~g~~p~---~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 454 (785)
.. .... .+..|+ ...+..+..++.. +..++|...+....... |+......+.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA 516 (987)
T PRK09782 440 KPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVA 516 (987)
T ss_pred cccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHH
Confidence 11 1111 122233 3344444444444 78888999777777654 4444333445
Q ss_pred HHHHhcCCHHHHHHHHHhcccC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHH
Q 003937 455 TMYSKAGNINAARRVFNLIHWR-QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQ 532 (785)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~ 532 (785)
..+...|++++|...|+++... |+...+..+...+.+.|+.++|...|++..+. .|+.. .+..+.......|++++
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHhCCCHHH
Confidence 5557899999999999987543 55666778888899999999999999999985 45543 44444455667799999
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 533 GQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
|...+++..+ +.|+...+..+..++.+.|+.++|.+.+++. ...|+ ...++.+...+...|+.++|+..++++++
T Consensus 595 Al~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 595 ALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999875 4678888999999999999999999999988 56775 66778888889999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 611 IEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 611 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
++|+++..+..++.+|...|++++|...+++..+..
T Consensus 672 l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 672 GLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999997643
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=1.3e-18 Score=175.93 Aligned_cols=381 Identities=19% Similarity=0.211 Sum_probs=254.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHhhhcCC---CCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHH
Q 003937 212 SSWNVVVSLHIHSGRLDLARAQFDQMIE---RDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSAC 288 (785)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~l~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~ 288 (785)
.+|..+.+.+-..|++++|+.+++.+++ ..+..|..+..++...|+.+.|...|.+.+ .+.|+.+...+-+.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~al---qlnP~l~ca~s~lg-- 191 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEAL---QLNPDLYCARSDLG-- 191 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHH---hcCcchhhhhcchh--
Confidence 4555555555555666666666655533 255678888888888888888888888773 34565443322111
Q ss_pred hcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHH
Q 003937 289 ANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARR 367 (785)
Q Consensus 289 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~ 367 (785)
......|++++|...+.+.....| -.++|+.|...+-..|++..|+.
T Consensus 192 --------------------------------nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq 239 (966)
T KOG4626|consen 192 --------------------------------NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQ 239 (966)
T ss_pred --------------------------------HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHH
Confidence 112223444444444444333333 23445555555555555555555
Q ss_pred HHHhcCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccCchHHHHHHHHHHHHhCC
Q 003937 368 IFDSLRDRD---VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNN-YTLSAMLSVSSSLASLDHGKQIHASALRSGE 443 (785)
Q Consensus 368 ~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 443 (785)
-|++...-| ...|-.|...|...+.+++|+..|.+... ..|+. +.+..+...|...|.++.|...++..+...
T Consensus 240 ~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~- 316 (966)
T KOG4626|consen 240 HYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ- 316 (966)
T ss_pred HHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-
Confidence 555544322 23444455555555555555555555443 23432 233444444455556666665555555432
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 003937 444 ASSLSVSNALITMYSKAGNINAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGV 520 (785)
Q Consensus 444 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l 520 (785)
+.-...|+.|..++...|++.+|...+.+.. -.| -..+.+.|...|...|..++|..+|....+ +.|... .++.|
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNL 394 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNL 394 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhH
Confidence 1124556777777777788888888877653 122 455678888888889999999999988888 788764 78888
Q ss_pred HHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 003937 521 LTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKN 597 (785)
Q Consensus 521 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~ 597 (785)
...|-+.|++++|...+++..+ +.|+ ...|+.+...|-..|+.++|...+.+. .+.|. ....+.|...+...|+
T Consensus 395 a~i~kqqgnl~~Ai~~Ykealr---I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALR---IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHh---cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence 8889999999999999988764 6777 567888889999999999999988877 67786 5688999999999999
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHH
Q 003937 598 LDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAAN 637 (785)
Q Consensus 598 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 637 (785)
+.+|+..++.++++.|+.+.+|-.++..+---.+|.+-.+
T Consensus 472 i~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~ 511 (966)
T KOG4626|consen 472 IPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDK 511 (966)
T ss_pred cHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHH
Confidence 9999999999999999999999999888777777776433
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=5.6e-18 Score=171.48 Aligned_cols=420 Identities=13% Similarity=0.126 Sum_probs=320.4
Q ss_pred HHHHHHHHhcCChHHHHHHhhhcCCCC---cccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcc
Q 003937 215 NVVVSLHIHSGRLDLARAQFDQMIERD---VVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANL 291 (785)
Q Consensus 215 ~~li~~~~~~g~~~~A~~l~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~ 291 (785)
..|..-..+.|++++|++--..+-..| ....-.+-..+.+..+.+....--...++ ...--..+|+.+-+.+-..
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r--~~~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIR--KNPQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhh--ccchHHHHHHHHHHHHHHh
Confidence 334444455566666665554442221 11122222444455555544332222211 1222345677777777777
Q ss_pred cchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCch-HhHHHHHHHHHhcCCHHHHHHHHH
Q 003937 292 EKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNV-IAFTTLLDGYIKIGDIGPARRIFD 370 (785)
Q Consensus 292 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~f~ 370 (785)
|+++.|...+..+++.. +..+..|..+..++...|+.+.|.+.|.+...-+|+. ...+.+...+-..|++++|...+.
T Consensus 130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYl 208 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYL 208 (966)
T ss_pred chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHH
Confidence 77777777777776654 2234556777888888999999999988877777754 445566667777899999999988
Q ss_pred hcCC--C-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc
Q 003937 371 SLRD--R-DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNN-YTLSAMLSVSSSLASLDHGKQIHASALRSGEASS 446 (785)
Q Consensus 371 ~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 446 (785)
+..+ | -.+.|+.|...+-..|+...|+..|++... +.|+. ..|..+-..+...+.++.|...+..+.... +..
T Consensus 209 kAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~ 285 (966)
T KOG4626|consen 209 KAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNH 285 (966)
T ss_pred HHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccc
Confidence 7665 3 357899999999999999999999999987 45653 356677777777778888877776665532 233
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhccc-CCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIHW-RQE-TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTA 523 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a 523 (785)
..++..|...|...|.++-|...+++... .|+ ...||.|..++-..|+..+|...|.+.+. +.|+. .+.+.|..+
T Consensus 286 A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni 363 (966)
T KOG4626|consen 286 AVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNI 363 (966)
T ss_pred hhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHH
Confidence 55566677789999999999999998653 344 56899999999999999999999999998 67876 488999999
Q ss_pred hhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 003937 524 CTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 524 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 600 (785)
+...|.+++|..+|....+ +.|. ....+.|...|-..|++++|..-+++. .++|+ ...++.+...|...|+.+.
T Consensus 364 ~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~ 440 (966)
T KOG4626|consen 364 YREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSA 440 (966)
T ss_pred HHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHH
Confidence 9999999999999998764 4565 567889999999999999999999887 78998 6689999999999999999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
|.+.+.+++..+|.-..++..|+.+|-.+|+..+|+.-++...+.
T Consensus 441 A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 441 AIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 999999999999998999999999999999999999999988654
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=7.1e-18 Score=180.87 Aligned_cols=289 Identities=15% Similarity=0.138 Sum_probs=180.4
Q ss_pred HHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCC-------HhHHHHHHHHHHHcCCh
Q 003937 322 CYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRD-------VVAWTAMLVGYEQNGLN 393 (785)
Q Consensus 322 ~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~ 393 (785)
.+...|++++|...|+++...+| +..++..+...+...|++++|..+++.+.... ...|..+...|.+.|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 45566777777777777665555 44566666677777777777777766655421 13456666666777777
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003937 394 KDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI 473 (785)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 473 (785)
++|+.+|+++.+.. .++..++ +.++..|.+.|++++|.+.|+.+
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~-----------------------------------~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGAL-----------------------------------QQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHH-----------------------------------HHHHHHHHHhchHHHHHHHHHHH
Confidence 77777777665431 1223333 44444555555555555555544
Q ss_pred ccC-CC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCC
Q 003937 474 HWR-QE------TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHK 545 (785)
Q Consensus 474 ~~~-p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 545 (785)
... |+ ...|..+...+...|++++|+..|+++.+. .|+. .++..+...+.+.|++++|.++++++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-- 243 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-- 243 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 321 11 112344555566666777777777766653 3432 35555666666677777777777666541
Q ss_pred CCCC--chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 546 IKPT--PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 546 ~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
.|+ ...++.++.+|.+.|++++|.+.++++ ...|+...+..+...+.+.|++++|...++++++..|++. .+..+
T Consensus 244 -~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l 321 (389)
T PRK11788 244 -DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRL 321 (389)
T ss_pred -ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHH
Confidence 222 344566777777777777777777776 3456666667777777888888888888888888877443 55555
Q ss_pred HHHHHh---cCChHHHHHHHHHHHhCCCccCCc
Q 003937 623 CNLYSS---CGKWEDAANIRKSMKYVGVKKTQG 652 (785)
Q Consensus 623 ~~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~ 652 (785)
+..+.. .|+.+++..++++|.+++++++|.
T Consensus 322 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 322 LDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 555543 458888888888888888877776
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=4.5e-18 Score=182.38 Aligned_cols=255 Identities=17% Similarity=0.128 Sum_probs=197.0
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc---hHHHHHHHHHHHhcC
Q 003937 386 GYEQNGLNKDAVELFRSMVREGPKPN-NYTLSAMLSVSSSLASLDHGKQIHASALRSGEASS---LSVSNALITMYSKAG 461 (785)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g 461 (785)
.+...|++++|+..|+++.+. .|+ ..++..+...+...|+++.|..++..+.+.+..++ ...+..+...|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 344556666666666666653 233 23455555556666666666666666655432211 245678899999999
Q ss_pred CHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCCHHHHHH
Q 003937 462 NINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH----ITYVGVLTACTHGGLVEQGQR 535 (785)
Q Consensus 462 ~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~ 535 (785)
++++|..+|+++... ++..+++.++..+.+.|++++|++.++++.+.+..++. ..+..+...+...|++++|..
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999998642 36778999999999999999999999999986533332 245567778889999999999
Q ss_pred HHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 003937 536 YYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD--VVAWGSLLSACRVHKNLDLGKIAAEKLLLIE 612 (785)
Q Consensus 536 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 612 (785)
+++++.+. .+.+...+..+...|.+.|++++|.++++++ ...|+ ..+++.+..++...|+.++|...++++.+..
T Consensus 202 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 202 LLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999762 2334567788889999999999999999998 34555 3568899999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 613 PDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 613 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
|++ ..+..++.+|.+.|++++|..+++++.+.
T Consensus 280 p~~-~~~~~la~~~~~~g~~~~A~~~l~~~l~~ 311 (389)
T PRK11788 280 PGA-DLLLALAQLLEEQEGPEAAQALLREQLRR 311 (389)
T ss_pred CCc-hHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 955 55689999999999999999999998765
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=3.2e-16 Score=177.09 Aligned_cols=251 Identities=12% Similarity=0.117 Sum_probs=194.3
Q ss_pred cCChhHHHHHHHHHHHcC-CCCCH-hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHH
Q 003937 390 NGLNKDAVELFRSMVREG-PKPNN-YTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAAR 467 (785)
Q Consensus 390 ~g~~~~A~~~~~~m~~~g-~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~ 467 (785)
.+++++|++.|++....+ ..|+. ..+..+...+...|+++.|...+...++.. +.....+..+...|...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 467788888888887654 23433 345555556677888888888888877653 223556777888888999999999
Q ss_pred HHHHhccc-CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcC
Q 003937 468 RVFNLIHW-RQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVH 544 (785)
Q Consensus 468 ~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 544 (785)
..|++... .| +...|..+...+...|++++|+..|++.++ +.|+. ..+..+..++.+.|++++|...|+...+
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 99987642 22 577888899999999999999999999988 56664 4677778888999999999999998875
Q ss_pred CCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 003937 545 KIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDV-V-------AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 545 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 615 (785)
..+.+...++.+...|...|++++|.+.|++. .+.|+. . .++..+..+...|++++|...++++++++|++
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~ 541 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC 541 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 23344678888999999999999999999886 444431 1 11222223445699999999999999999999
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 616 SGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 616 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
..++..++.+|...|++++|.+++++..+.
T Consensus 542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 542 DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 889999999999999999999999998653
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.81 E-value=6e-15 Score=158.07 Aligned_cols=540 Identities=12% Similarity=0.065 Sum_probs=357.4
Q ss_pred hhHHHHHHhhCCCCCcc-HHHHHHHHHH--hCCChhHHHHHHHHhHHC--CCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 003937 95 LDLACEVFNLMPNRDSV-SWTTIIVTYN--EIGRFKNAIRMFVEMVQD--QVLPTQFTVTSVLASCTALGDLSAGKKVHS 169 (785)
Q Consensus 95 ~~~A~~~f~~m~~~~~~-~~~~li~~~~--~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 169 (785)
++.|.+.|......+.. ..-.+..++. ..+++..|+.+|...... ...||... .+-.++.+.|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 46666666655432111 1222333333 346788888888885543 23444422 22244567778888888888
Q ss_pred HHHHhCCCCChhHHHHHHHHHHhCC---ChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCC--
Q 003937 170 FVVKTGLSGCVNVTNSLLNMYAKVG---DEMMAKAVFDGMR---LKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERD-- 241 (785)
Q Consensus 170 ~~~~~g~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-- 241 (785)
.+++.. +.++.++-.|--.-.... .+..+..++...- ..|++..+.|.+.|.-.|+++.++.+...++..+
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 777764 222222222222222222 2344444444332 4477788888888888888888888888775533
Q ss_pred ----cccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhh--HHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcch
Q 003937 242 ----VVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFT--LASTLSACANLEKLKLGKQIHAYIIRTEFDATGPV 315 (785)
Q Consensus 242 ----~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 315 (785)
..+|-.+.++|-..|++++|...|.+.+ +..||.++ +..+-..+...|+++.+...|+.+.+.. +.+..+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~---k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~et 378 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESL---KADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYET 378 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH---ccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHH
Confidence 2346778888888888888888887762 33455533 3446666778888888888888887764 344455
Q ss_pred HHHHHHHHHhcC----ChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhc-------C-CCCHhHHHH
Q 003937 316 GNALISCYAKVG----GVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSL-------R-DRDVVAWTA 382 (785)
Q Consensus 316 ~~~li~~y~~~g----~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~-------~-~~~~~~~~~ 382 (785)
...|...|...+ ..+.|..++.+.....| |..+|-.+...|.+..-+.. ...|... . ...+...|.
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 556666666664 56777777777665554 77788888777766544332 4433322 2 245667888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc---CCCCCH-----hhHHHHHH-HHhccCchHHHHHHHHHHHHhCCCCchHHHHHH
Q 003937 383 MLVGYEQNGLNKDAVELFRSMVRE---GPKPNN-----YTLSAMLS-VSSSLASLDHGKQIHASALRSGEASSLSVSNAL 453 (785)
Q Consensus 383 li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~-----~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 453 (785)
+...+...|++++|...|.+.... -..+|. .|...-+. ..-..++.+.|.+++..+.+... .=+..|--|
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl 536 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRL 536 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHh
Confidence 888889999999999999887654 223333 23333333 34456788999999999887631 112222222
Q ss_pred HHHHHhcCCHHHHHHHHHhcc--cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhc----
Q 003937 454 ITMYSKAGNINAARRVFNLIH--WRQETVSWTSMIVALAQHGLGEEAIQLFERMLEL-GIKPDHITYVGVLTACTH---- 526 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~---- 526 (785)
.-+-...+...+|...+.... ...++..|+-+...|.....+..|.+-|+...+. ...+|..+..+|.+.|..
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 223333467778888887764 2236677777777888888888888877776653 233677777777775542
Q ss_pred --------cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcC
Q 003937 527 --------GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMP--LEPDVVAWGSLLSACRVHK 596 (785)
Q Consensus 527 --------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g 596 (785)
.+..++|+++|.+..+ .-+.|...-|.+.-.++..|++.+|..+|.+.. ..-+..+|-.+...|...|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHH
Confidence 2456788888888875 345567777788888999999999999999882 2335568999999999999
Q ss_pred CHHHHHHHHHHHHhh--CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 597 NLDLGKIAAEKLLLI--EPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 597 ~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
++..|+++|+..+.. .-+++.....|+.++.+.|+|.+|.+........
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999873 3446778889999999999999999988777643
No 20
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.80 E-value=8.4e-15 Score=156.95 Aligned_cols=575 Identities=13% Similarity=0.065 Sum_probs=286.4
Q ss_pred cchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC------CChh-----hHHHHHHHHHccC----
Q 003937 29 PFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV------KTLC-----SWNTILSAYAKQG---- 93 (785)
Q Consensus 29 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------~~~~-----~~~~li~~~~~~g---- 93 (785)
+.++-++...+...+ ....+|..+...|.+.|..++...+++.-.. .++. .++.+-..|+..+
T Consensus 24 LPD~~ev~~IL~~e~--a~le~wi~~AleYy~~gk~eefi~iLE~g~~~~~~~y~d~~~~~~~a~~~laay~s~~a~kek 101 (1018)
T KOG2002|consen 24 LPDATEVLSILKAEQ--APLEAWIEIALEYYKQGKTEEFIKILESGLIDANEEYADVKSDQMKALDILAAYYSQLAMKEK 101 (1018)
T ss_pred CCChHHHHHHHHHhc--CchhHHHHHHHHHHhcccHHHHHHHHHhhhhcccchhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336666766666554 3457888888899999999999999998761 1111 1222222221211
Q ss_pred -------ChhHHHHHHhhCCCCCccHHHHHH---HHHHhCCC--hhHHHHHHHHhHHCCCCCChhhHHHHHHHHh--ccC
Q 003937 94 -------RLDLACEVFNLMPNRDSVSWTTII---VTYNEIGR--FKNAIRMFVEMVQDQVLPTQFTVTSVLASCT--ALG 159 (785)
Q Consensus 94 -------~~~~A~~~f~~m~~~~~~~~~~li---~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~g 159 (785)
.+..|..+|+....-+...+..++ ..|...|. .+.|...|...++.. ++|. ...+.+||. ..+
T Consensus 102 ~~~~k~e~~~~at~~~~~A~ki~m~~~~~l~~~~~~~l~~~~~~~~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ynkk 178 (1018)
T KOG2002|consen 102 KKDEKDELFDKATLLFDLADKIDMYEDSHLLVQRGFLLLEGDKSMDDADAQFHFVLKQS-PDNI--LALLGKARIAYNKK 178 (1018)
T ss_pred hcchhHHHHHHHHHHhhHHHHhhccCcchhhhhhhhhhhcCCccHHHHHHHHHHHHhhC-Ccch--HHHHHHHHHHhccc
Confidence 134455555544332222222211 12233333 588888888887643 2333 344556654 667
Q ss_pred ChhHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHh------cCChHHHH
Q 003937 160 DLSAGKKVHSFVVKTG--LSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIH------SGRLDLAR 231 (785)
Q Consensus 160 ~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~------~g~~~~A~ 231 (785)
++..|..+|..++... ..||+.+.. -.++.++|+.+.|...|....+-|+...++++....- ...+..+.
T Consensus 179 dY~~al~yyk~al~inp~~~aD~rIgi--g~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~ 256 (1018)
T KOG2002|consen 179 DYRGALKYYKKALRINPACKADVRIGI--GHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGV 256 (1018)
T ss_pred cHHHHHHHHHHHHhcCcccCCCccchh--hhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHH
Confidence 8999999999977654 466665543 3677899999999999988775555433333322211 13344555
Q ss_pred HHhhhc---CCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCC-ChhhHHHHHHHHhcccchhhHHHHHHHHHHh
Q 003937 232 AQFDQM---IERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKP-DKFTLASTLSACANLEKLKLGKQIHAYIIRT 307 (785)
Q Consensus 232 ~l~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 307 (785)
.++... ...|++..+.|..-|.-.|++..+..+...++...-..+ -...|-.+-.++-..|+++.|...|-...+.
T Consensus 257 ~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~ 336 (1018)
T KOG2002|consen 257 QLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA 336 (1018)
T ss_pred HHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc
Confidence 555544 224667777777777777777777777766643221111 1122334444555555555555555444443
Q ss_pred cCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcC----CHHHHHHHHHhcCCC---CHhH
Q 003937 308 EFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIG----DIGPARRIFDSLRDR---DVVA 379 (785)
Q Consensus 308 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g----~~~~A~~~f~~~~~~---~~~~ 379 (785)
.-..-+..+-.|..+|.+.|+++.+...|+.+....| +..+...+...|...+ ..+.|..+......+ |...
T Consensus 337 ~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a 416 (1018)
T KOG2002|consen 337 DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEA 416 (1018)
T ss_pred CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHH
Confidence 3222122223445555555555555555555444333 3344444444444443 233333333333332 2233
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 003937 380 WTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSK 459 (785)
Q Consensus 380 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 459 (785)
|-.+...+-+.. ...++..|.... ..+...+-.+.+.+.|.+...+..
T Consensus 417 ~l~laql~e~~d-~~~sL~~~~~A~-------------------------------d~L~~~~~~ip~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 417 WLELAQLLEQTD-PWASLDAYGNAL-------------------------------DILESKGKQIPPEVLNNVASLHFR 464 (1018)
T ss_pred HHHHHHHHHhcC-hHHHHHHHHHHH-------------------------------HHHHHcCCCCCHHHHHhHHHHHHH
Confidence 333322222222 111233332211 112223333445555555555555
Q ss_pred cCCHHHHHHHHHhcccC------CCh------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhc
Q 003937 460 AGNINAARRVFNLIHWR------QET------VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTH 526 (785)
Q Consensus 460 ~g~~~~A~~~~~~~~~~------p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~ 526 (785)
.|++++|...|+....+ +|. .+--.+...+-..++.+.|.+.|....+ ..|.-+ .|.-++.....
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk--ehp~YId~ylRl~~ma~~ 542 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK--EHPGYIDAYLRLGCMARD 542 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH--HCchhHHHHHHhhHHHHh
Confidence 55555555555543211 111 0111122333344455555555555555 345443 33333322223
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH---------
Q 003937 527 GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM----PLEPDVVAWGSLLSACR--------- 593 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~--------- 593 (785)
.+...+|...++.... ....++..++-+.+.+.+...+..|.+-|+.. ...+|..+.-+|.+.|.
T Consensus 543 k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 543 KNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred ccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 3455555555555543 22333333444444555555554444422222 22344444444444331
Q ss_pred ---hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 594 ---VHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 594 ---~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
..+..+.|++.|.+++..+|.|.-+-+.++-+++..|+|++|..+|.+..+..
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~ 676 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT 676 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence 12234455555555555566555555555555666666666666666655543
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.78 E-value=1.2e-15 Score=171.72 Aligned_cols=287 Identities=12% Similarity=0.031 Sum_probs=187.1
Q ss_pred HHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHHHH
Q 003937 323 YAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVE 398 (785)
Q Consensus 323 y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 398 (785)
....|++++|...|+++....| +...|..+...+.+.|++++|...|++... .+...|..+...+.+.|++++|..
T Consensus 86 ~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~ 165 (656)
T PRK15174 86 PLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAIS 165 (656)
T ss_pred HhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHH
Confidence 3445666666666666554444 445566666666666666666666666543 234556666666666777777776
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC--
Q 003937 399 LFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-- 476 (785)
Q Consensus 399 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-- 476 (785)
.++.+.... |+.......+..+...|++++|...+..+.+....++......+...+.+.|++++|...|++....
T Consensus 166 ~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p 243 (656)
T PRK15174 166 LARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL 243 (656)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 666665432 2222211122235566667777666666655433333334444566777788888888888766422
Q ss_pred CChhHHHHHHHHHHHcCChHH----HHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-c
Q 003937 477 QETVSWTSMIVALAQHGLGEE----AIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-P 550 (785)
Q Consensus 477 p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~ 550 (785)
.+...+..+...|...|++++ |+..|++..+ +.|+. ..+..+...+...|++++|...+++..+ ..|+ .
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~ 318 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLP 318 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCH
Confidence 255667778888888888775 7888888887 45654 4777777888888888888888888775 2344 4
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVVAW-GSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
..+..+...|.+.|++++|.+.++++ ...|+...+ ..+..++...|+.++|...++++++..|++.
T Consensus 319 ~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 319 YVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 45666778888888888888888877 345664443 3345567888888888888888888888653
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=1.6e-14 Score=166.24 Aligned_cols=89 Identities=10% Similarity=0.003 Sum_probs=46.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCh
Q 003937 555 SMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKW 632 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 632 (785)
.+...+...|++++|++.++++ ...| +...+..+...+...|+.++|+..++++++++|++...+..++..+...|+|
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence 3444455555555555555554 2223 2344455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHH
Q 003937 633 EDAANIRKSMK 643 (785)
Q Consensus 633 ~~a~~~~~~m~ 643 (785)
++|..+++.+.
T Consensus 444 ~~A~~~~~~ll 454 (765)
T PRK10049 444 RQMDVLTDDVV 454 (765)
T ss_pred HHHHHHHHHHH
Confidence 55555555554
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=6.1e-15 Score=169.66 Aligned_cols=398 Identities=9% Similarity=0.023 Sum_probs=305.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHhhhcCC---CCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCC-hhhHHHHHHH
Q 003937 212 SSWNVVVSLHIHSGRLDLARAQFDQMIE---RDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPD-KFTLASTLSA 287 (785)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~l~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~-~~t~~~ll~~ 287 (785)
....-.+......|+.++|++++.+... .+...+..+...+.+.|++++|..+|++.+.. .|+ ......+...
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~ 92 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL---EPQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3455667788899999999999998854 23445899999999999999999999998543 344 3445667777
Q ss_pred HhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHH
Q 003937 288 CANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPAR 366 (785)
Q Consensus 288 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~ 366 (785)
+...++.+.|...++.+++.. +.+.. +..+..++...|+.++|+..+++.....| +...+..+...+.+.|..++|.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Confidence 889999999999999998874 34444 88889999999999999999999888777 5667788899999999999999
Q ss_pred HHHHhcCCCCHh--------HHHHHHHHHH-----HcCCh---hHHHHHHHHHHHc-CCCCCHh-hHHH----HHHHHhc
Q 003937 367 RIFDSLRDRDVV--------AWTAMLVGYE-----QNGLN---KDAVELFRSMVRE-GPKPNNY-TLSA----MLSVSSS 424 (785)
Q Consensus 367 ~~f~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~~~~~m~~~-g~~p~~~-t~~~----ll~a~~~ 424 (785)
..++.... ++. ....++..+. ..+++ ++|++.++.+.+. ...|+.. .+.. .+.++..
T Consensus 171 ~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~ 249 (765)
T PRK10049 171 GAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA 249 (765)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence 99998886 211 1222222222 22234 7789999999864 2334332 2221 1455667
Q ss_pred cCchHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-CC-----hhHHHHHHHHHHHcCChHH
Q 003937 425 LASLDHGKQIHASALRSGEA-SSLSVSNALITMYSKAGNINAARRVFNLIHWR-QE-----TVSWTSMIVALAQHGLGEE 497 (785)
Q Consensus 425 ~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~-----~~~~~~li~~~~~~g~~~~ 497 (785)
.++.++|...++.+.+.+.+ |+- ....+...|...|++++|...|+++... |. ...+..+..++...|++++
T Consensus 250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 79999999999999987643 322 2223577899999999999999987533 22 2346667778899999999
Q ss_pred HHHHHHHHHHCC-----------CCCCH---HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc
Q 003937 498 AIQLFERMLELG-----------IKPDH---ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA 563 (785)
Q Consensus 498 A~~~~~~m~~~g-----------~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 563 (785)
|+++++++.... -.|+. ..+..+...+...|++++|.+.++++.. ..+.+...+..+..++...
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~ 406 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQAR 406 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhc
Confidence 999999998742 11332 2345566788899999999999999976 3445577888999999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 564 GLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 564 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
|+.++|++.+++. ...|+ ...+..+...+...|++++|+.+++++++..|+++.+
T Consensus 407 g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 407 GWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999988 56786 5566777778889999999999999999999988754
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=2.4e-15 Score=169.22 Aligned_cols=319 Identities=9% Similarity=-0.018 Sum_probs=261.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHHcCCh
Q 003937 318 ALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD--R-DVVAWTAMLVGYEQNGLN 393 (785)
Q Consensus 318 ~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~ 393 (785)
-++....+.|+.++|..+++......| +...+..++......|++++|...|+.+.. | +...|..+...+.+.|++
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~ 126 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY 126 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 345567788999999999998776666 566778888888899999999999999875 3 567888889999999999
Q ss_pred hHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003937 394 KDAVELFRSMVREGPKPN-NYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNL 472 (785)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 472 (785)
++|+..|++.... .|+ ...+..+...+...|+.+.|...+..+......+.. .+..+ ..+...|++++|...++.
T Consensus 127 ~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 127 ATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHH
Confidence 9999999999874 555 455677788899999999999999988776543333 33333 347889999999999998
Q ss_pred cccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHH----HHHHHHHhhhcC
Q 003937 473 IHWR---QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQ----GQRYYNMMKNVH 544 (785)
Q Consensus 473 ~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~----a~~~~~~m~~~~ 544 (785)
+... ++...+..+...+...|++++|+..|++..+. .|+. ..+..+..++...|++++ |...|++..+
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~-- 278 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ-- 278 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--
Confidence 6433 23344555677889999999999999999984 5654 577788889999999986 7999998875
Q ss_pred CCCC-CchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 003937 545 KIKP-TPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSA 621 (785)
Q Consensus 545 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 621 (785)
+.| +...+..+...|.+.|++++|...+++. ...|+ ...+..+...+...|++++|...++++.+..|++...+..
T Consensus 279 -l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~ 357 (656)
T PRK15174 279 -FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRY 357 (656)
T ss_pred -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHH
Confidence 334 4678889999999999999999999988 45665 5677888888999999999999999999999987777777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 003937 622 LCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 622 l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
++.++...|++++|...+++..+.
T Consensus 358 ~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 358 AAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888999999999999999998654
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=2.7e-14 Score=161.42 Aligned_cols=417 Identities=13% Similarity=0.017 Sum_probs=229.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 003937 113 WTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAK 192 (785)
Q Consensus 113 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~ 192 (785)
+...-..+.+.|++++|+..|++.++ +.|+...|..+..++...|+++.|...+...++.. +.+...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 44556677788888888888888775 45777778888888888888888888888888765 4456677778888888
Q ss_pred CCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhh
Q 003937 193 VGDEMMAKAVFDGMRLKN---VSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANML 269 (785)
Q Consensus 193 ~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml 269 (785)
.|++++|..-|......+ ......++..+........+...++.- ..+..++..+-. |...........-+.+-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~- 283 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLEDS- 283 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhhcc-
Confidence 888888887765443111 111111111111111122233333221 112223322221 22111111111111111
Q ss_pred hcCCCCCChh-hHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCC---CC-
Q 003937 270 KDSSLKPDKF-TLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGIS---YL- 344 (785)
Q Consensus 270 ~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~- 344 (785)
....|+.. .+..+-... .-....+++++|.+.|++.... .|
T Consensus 284 --~~~~~~~~~~~~~l~~~~--------------------------------~e~~~~~~y~~A~~~~~~al~~~~~~~~ 329 (615)
T TIGR00990 284 --NELDEETGNGQLQLGLKS--------------------------------PESKADESYEEAARAFEKALDLGKLGEK 329 (615)
T ss_pred --cccccccccchHHHHHHH--------------------------------HHhhhhhhHHHHHHHHHHHHhcCCCChh
Confidence 00111100 000000000 0001234455555555543322 12
Q ss_pred chHhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 003937 345 NVIAFTTLLDGYIKIGDIGPARRIFDSLRD--R-DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSV 421 (785)
Q Consensus 345 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 421 (785)
....|+.+...+...|++++|...|+...+ | +..+|..+...+...|++++|+..|++..+.. ..+...+..+...
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~ 408 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQL 408 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 334455555555555566666666555443 2 23355555555566666666666666655432 1123444555555
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-CC-ChhHHHHHHHHHHHcCChHHHH
Q 003937 422 SSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW-RQ-ETVSWTSMIVALAQHGLGEEAI 499 (785)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~ 499 (785)
+...|++++|...+...++.. +.+...+..+...+.+.|++++|...|++... .| +...|+.+...+...|++++|+
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 556666666666666655543 23345556677777788888888888876532 23 4567777778888888888888
Q ss_pred HHHHHHHHCCCCCCH--H------HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHH
Q 003937 500 QLFERMLELGIKPDH--I------TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAY 570 (785)
Q Consensus 500 ~~~~~m~~~g~~p~~--~------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 570 (785)
+.|++..+. .|+. . .+...+..+...|++++|.+++++..+ +.|+ ...+..+...|.+.|++++|.
T Consensus 488 ~~~~~Al~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~---l~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 488 EKFDTAIEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI---IDPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 888887763 3321 1 112222233446888888888887764 2344 345777888888888888888
Q ss_pred HHHHhC
Q 003937 571 NFIENM 576 (785)
Q Consensus 571 ~~~~~~ 576 (785)
++|++.
T Consensus 563 ~~~e~A 568 (615)
T TIGR00990 563 KLFERA 568 (615)
T ss_pred HHHHHH
Confidence 888776
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.75 E-value=5.7e-14 Score=158.16 Aligned_cols=430 Identities=10% Similarity=0.018 Sum_probs=225.2
Q ss_pred HHHHhCCChHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHH-H--HHHHhhCCCchHH
Q 003937 188 NMYAKVGDEMMAKAVFDGMRLKNVS---SWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNS-M--IAGYSQNGYDFEA 261 (785)
Q Consensus 188 ~~~~~~g~~~~A~~~~~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~-l--i~~~~~~g~~~~A 261 (785)
-...+.|+++.|+..|++....+.. ....++..+...|+.++|+..+++...|+...+.. + ...|...|++++|
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3456889999999999988754433 23378888888899999999998887764444333 3 3467777999999
Q ss_pred HHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCC
Q 003937 262 LGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGI 341 (785)
Q Consensus 262 ~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 341 (785)
+++|++++....-.| ..+..+...+...++.+.|.+.+..+.+. .|+...+-.++..+...++..+|++.++++..
T Consensus 122 iely~kaL~~dP~n~--~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 122 LALWQSSLKKDPTNP--DLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHhhCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 999998855433332 33345566666777777777777766655 33344444444444445555557777777666
Q ss_pred CCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCC-CHhHHHHH----HHHHHHcCChhHHHHHHHHHHHcCCCCCHhhH
Q 003937 342 SYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDR-DVVAWTAM----LVGYEQNGLNKDAVELFRSMVREGPKPNNYTL 415 (785)
Q Consensus 342 ~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 415 (785)
..| +...+..+...+.+.|-...|.++...-++- +...+.-+ +.-.++.+ ..|+..-
T Consensus 198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a----------------~~~~~~~- 260 (822)
T PRK14574 198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMA----------------VLPTRSE- 260 (822)
T ss_pred hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhc----------------ccccccc-
Confidence 655 5566677777777777777777777665531 11111110 11111111 0000000
Q ss_pred HHHHHHHhccCchHHHHHHHHHHHHh-CC-CCchHH-HHHH---HHHHHhcCCHHHHHHHHHhcccCC-Chh--HHHHHH
Q 003937 416 SAMLSVSSSLASLDHGKQIHASALRS-GE-ASSLSV-SNAL---ITMYSKAGNINAARRVFNLIHWRQ-ETV--SWTSMI 486 (785)
Q Consensus 416 ~~ll~a~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~-~~~l---i~~y~~~g~~~~A~~~~~~~~~~p-~~~--~~~~li 486 (785)
-.+..-.+.+..-++.+... +- ++.... ..+. +-++.+.|+..++.+.|+.++..+ .+. .-..+.
T Consensus 261 ------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 261 ------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 00000112222222222221 11 111111 1122 223344555555555555554221 111 223344
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCC----CC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCC----------CCCC--
Q 003937 487 VALAQHGLGEEAIQLFERMLELGI----KP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHK----------IKPT-- 549 (785)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m~~~g~----~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~-- 549 (785)
++|...+++++|+.+|++.....- .| +......|.-++...+++++|..+++.+.+... -.|+
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 555555555555555555543210 11 112234445555555555555555555543110 0111
Q ss_pred -chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 003937 550 -PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY 626 (785)
Q Consensus 550 -~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 626 (785)
...+..++..+...|++.+|++.++++ ...| |...+..+...+...|+...|+..++.+..++|++..+...++..+
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 112233445555566666666666665 2233 4555555666666666666666666666666666666666666666
Q ss_pred HhcCChHHHHHHHHHHHh
Q 003937 627 SSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 627 ~~~g~~~~a~~~~~~m~~ 644 (785)
...|+|++|..+.+...+
T Consensus 495 l~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 495 MALQEWHQMELLTDDVIS 512 (822)
T ss_pred HhhhhHHHHHHHHHHHHh
Confidence 666666666665555543
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.73 E-value=1.2e-13 Score=155.69 Aligned_cols=442 Identities=10% Similarity=0.028 Sum_probs=307.8
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCc-chHHHH--HHHHHhcCChHHH
Q 003937 154 SCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNV-SSWNVV--VSLHIHSGRLDLA 230 (785)
Q Consensus 154 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~~~~l--i~~~~~~g~~~~A 230 (785)
...+.|+.+.|...+.++++........++ .++..+...|+.++|+..+++...++. ..+..+ ...+...|++++|
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 346889999999999999988522212344 888999999999999999999886643 344444 5578888999999
Q ss_pred HHHhhhcCCC---CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHh
Q 003937 231 RAQFDQMIER---DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRT 307 (785)
Q Consensus 231 ~~l~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 307 (785)
.++|+++.+. |...+..++..|...++.++|++.+.+.. ...|+...+..+.......++...|.+.++.+++.
T Consensus 122 iely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~---~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELA---ERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhc---ccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 9999999553 45667788889999999999999999983 34566666644444444456665699999999988
Q ss_pred cCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHH
Q 003937 308 EFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGY 387 (785)
Q Consensus 308 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 387 (785)
. +.+...+..++....+.|-...|.++..+-..-.....-.. + +.+.|....+.-..++.. .-.
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~-l--------~~~~~a~~vr~a~~~~~~----~~~-- 262 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ-L--------ERDAAAEQVRMAVLPTRS----ETE-- 262 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH-H--------HHHHHHHHHhhccccccc----chh--
Confidence 5 55677788899999999999999988887543221111111 0 222222222221111000 000
Q ss_pred HHcCChhHHHHHHHHHHHc-CCCCCH-hhH----HHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC
Q 003937 388 EQNGLNKDAVELFRSMVRE-GPKPNN-YTL----SAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAG 461 (785)
Q Consensus 388 ~~~g~~~~A~~~~~~m~~~-g~~p~~-~t~----~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g 461 (785)
+.--.+.|+.-++.+... +..|.. .-| .--+-++...++...+...++.+...+.+....+-.++.++|...+
T Consensus 263 -r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 263 -RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred -hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 000124455555554431 122321 111 1234456677777778888887777776666667778888888888
Q ss_pred CHHHHHHHHHhcccC--------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-------------CCCCHH-HHHH
Q 003937 462 NINAARRVFNLIHWR--------QETVSWTSMIVALAQHGLGEEAIQLFERMLELG-------------IKPDHI-TYVG 519 (785)
Q Consensus 462 ~~~~A~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~-t~~~ 519 (785)
++++|..+|+.+... ++......|.-+|...+++++|..+++++.+.- ..||-. .+..
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 888888888876321 123334677888888888888888888888731 112333 3444
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKN 597 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~ 597 (785)
++..+...|++.+|++.++.+.. .-+-|......+.+++...|...+|++.++.. .+.|+ ..+...........++
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e 499 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQE 499 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhh
Confidence 55678889999999999999975 44567888899999999999999999999776 45675 5566677777888899
Q ss_pred HHHHHHHHHHHHhhCCCCchh
Q 003937 598 LDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 598 ~~~a~~~~~~~~~~~p~~~~~ 618 (785)
+++|..+.+.+.+..|+++.+
T Consensus 500 ~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 500 WHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHHHHHhhCCCchhH
Confidence 999999999999999988744
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=2.3e-13 Score=132.70 Aligned_cols=331 Identities=15% Similarity=0.174 Sum_probs=232.6
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHH--hcCC-hhHHHHHhhcCCC---CChhhHHHHHHHHHc
Q 003937 18 HLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYA--KTES-ISYAKKVFDEMPV---KTLCSWNTILSAYAK 91 (785)
Q Consensus 18 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~g~-~~~a~~~~~~~~~---~~~~~~~~li~~~~~ 91 (785)
.|++ ...+|.+.++.-+|+.|.+.|...+..+-..|+..-+ .+.+ +-.-++.|-.|.. .+..+| +
T Consensus 121 nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K 191 (625)
T KOG4422|consen 121 NLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW--------K 191 (625)
T ss_pred HHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc--------c
Confidence 3443 3456899999999999999999999888777766433 3333 3334556767764 455566 4
Q ss_pred cCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHH
Q 003937 92 QGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFV 171 (785)
Q Consensus 92 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~ 171 (785)
.|.+.+ ++-+.......++.+||.++|+.-..+.|.+++++-.+...+.+..+|+.+|.+.+- ..++++..+|
T Consensus 192 ~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EM 264 (625)
T KOG4422|consen 192 SGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEM 264 (625)
T ss_pred cccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHH
Confidence 555444 444445566778999999999999999999999999998889999999999988653 3448999999
Q ss_pred HHhCCCCChhHHHHHHHHHHhCCChHHHHHHH----hcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHH
Q 003937 172 VKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVF----DGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNS 247 (785)
Q Consensus 172 ~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~ 247 (785)
+...+.||.+++|+++++.++.|+++.|++.+ .+|++-++ +|...+|..
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGV---------------------------ePsLsSyh~ 317 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGV---------------------------EPSLSSYHL 317 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCC---------------------------CcchhhHHH
Confidence 99999999999999999999999988876554 33333333 677777777
Q ss_pred HHHHHhhCCCchH-HHHHHHHhhh---cCCCCC----ChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHH
Q 003937 248 MIAGYSQNGYDFE-ALGMFANMLK---DSSLKP----DKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNAL 319 (785)
Q Consensus 248 li~~~~~~g~~~~-A~~l~~~ml~---~~g~~p----~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 319 (785)
+|..+.+.+++.+ |..++.+.+. ...++| |...|...+..|.+..+.+.|.+++.......
T Consensus 318 iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~----------- 386 (625)
T KOG4422|consen 318 IIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGD----------- 386 (625)
T ss_pred HHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-----------
Confidence 7777777776644 3333433311 122222 34456667777777777777766665432111
Q ss_pred HHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHH
Q 003937 320 ISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVEL 399 (785)
Q Consensus 320 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 399 (785)
+++..-..+ ....-|..+....++....+.-+..
T Consensus 387 -----------------------------------------N~~~ig~~~-----~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 387 -----------------------------------------NWKFIGPDQ-----HRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred -----------------------------------------chhhcChHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111000001 1123355566677788888888888
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchH
Q 003937 400 FRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLS 448 (785)
Q Consensus 400 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 448 (785)
|..|.-.-.-|+..+...++.|....+.++-...++..++..|......
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~ 469 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD 469 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence 8888877778888899899999888899998888888888877544433
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.70 E-value=4.7e-11 Score=122.83 Aligned_cols=623 Identities=13% Similarity=0.114 Sum_probs=443.2
Q ss_pred CCCCChHHHHHHHHHhhc-----CCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC---CCh
Q 003937 8 SLISPLEFYAHLLQSNLK-----SRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV---KTL 79 (785)
Q Consensus 8 ~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~ 79 (785)
+...|+.-|..=+++-.. .++...|+.++.++.+.++. ++..|-+-...--..|.+..|+.+...--+ ++.
T Consensus 241 qtvvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretnP~-hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSe 319 (913)
T KOG0495|consen 241 QTVVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETNPK-HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSE 319 (913)
T ss_pred CcccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchH
Confidence 344455555554444322 34667788888888887743 233343333344567788888777654322 233
Q ss_pred hhHHHHHHHHHccCChhHHHHHHhhCCC--CC-ccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHh
Q 003937 80 CSWNTILSAYAKQGRLDLACEVFNLMPN--RD-SVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCT 156 (785)
Q Consensus 80 ~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~ 156 (785)
..|---+ |....+.|..+...... |+ +..|- .+---..+...=.+++++.++. -|+.+. |=++..
T Consensus 320 DvWLeai----RLhp~d~aK~vvA~Avr~~P~Sv~lW~---kA~dLE~~~~~K~RVlRKALe~--iP~sv~---LWKaAV 387 (913)
T KOG0495|consen 320 DVWLEAI----RLHPPDVAKTVVANAVRFLPTSVRLWL---KAADLESDTKNKKRVLRKALEH--IPRSVR---LWKAAV 387 (913)
T ss_pred HHHHHHH----hcCChHHHHHHHHHHHHhCCCChhhhh---hHHhhhhHHHHHHHHHHHHHHh--CCchHH---HHHHHH
Confidence 3332221 22234444444443332 22 22232 2211122333334566666553 354432 224444
Q ss_pred ccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHH
Q 003937 157 ALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMR---LKNVSSWNVVVSLHIHSGRLDLARAQ 233 (785)
Q Consensus 157 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l 233 (785)
...+.+.|+.++....+.- +.+... .-+|++..-++.|.+++.+.. ..+...|.+-...--.+|+++...++
T Consensus 388 elE~~~darilL~rAvecc-p~s~dL----wlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMDL----WLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHHH----HHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 5566667888888877763 333333 344566677788888877655 44777888888888888988888888
Q ss_pred hhhcC--------CCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCC--hhhHHHHHHHHhcccchhhHHHHHHH
Q 003937 234 FDQMI--------ERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPD--KFTLASTLSACANLEKLKLGKQIHAY 303 (785)
Q Consensus 234 ~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~ 303 (785)
.++-. .-+...|-.=...+-..|..--+..+.... ..-|+.-. ..|+..--..|.+.+.++-++.+|..
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~av-igigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAV-IGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHH-HhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 87652 123344555555666666666666666665 33444332 35788888899999999999999999
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhH
Q 003937 304 IIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVA 379 (785)
Q Consensus 304 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~ 379 (785)
.++.- +.+..+|...+..--..|..++-..+|++....-| ....|......+-..|++..|+.++....+ .+...
T Consensus 542 alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseei 620 (913)
T KOG0495|consen 542 ALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEI 620 (913)
T ss_pred HHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHH
Confidence 88763 66778888888888889999999999999766655 667888889999999999999999988765 35678
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 003937 380 WTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSK 459 (785)
Q Consensus 380 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~ 459 (785)
|-+-+..-..+.++++|..+|.+... ..|+...|.--+..---++..++|.++++..++. ++.-...|-.+.+.|-+
T Consensus 621 wlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHH
Confidence 88888888999999999999999876 4566666655555556678899999999888775 44456778888899999
Q ss_pred cCCHHHHHHHHHhcc-cCCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHH
Q 003937 460 AGNINAARRVFNLIH-WRQE-TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYY 537 (785)
Q Consensus 460 ~g~~~~A~~~~~~~~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~ 537 (785)
.++++.|.+.|..-. .-|+ +..|-.|...=-+.|..-+|..+|++.+..+ +-|...|...+..-.+.|..+.|..+.
T Consensus 698 ~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999987654 3354 4568888887788899999999999998853 335568999999999999999999999
Q ss_pred HHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 003937 538 NMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 538 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 617 (785)
.+..+ .++.+...|..-|.+..+.++-..+.+.+++.. -|+.+.-++...+.....++.|...|++++..+|++..
T Consensus 777 akALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 777 AKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred HHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 98876 566777889999999999998877777777764 45555566667778888999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECC
Q 003937 618 AYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQN 660 (785)
Q Consensus 618 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~ 660 (785)
+|.-+..-+...|.-++-.+++.+-... .|..|-.|+.+..
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK 893 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSK 893 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhh
Confidence 9999999999999999999999887653 3456666765443
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.69 E-value=1.7e-12 Score=138.80 Aligned_cols=534 Identities=13% Similarity=0.128 Sum_probs=362.2
Q ss_pred cCChhHHHHHHhhCCC---CCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC-ChhhHHHHHHHHhccCChhHHHHH
Q 003937 92 QGRLDLACEVFNLMPN---RDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLP-TQFTVTSVLASCTALGDLSAGKKV 167 (785)
Q Consensus 92 ~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~ 167 (785)
.|++++|.+++.++.. .+...|.+|-..|-+.|+.++++..+-..- ...| |..-|..+-.-..+.|.+++|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 4999999999988765 466789999999999999999887665443 3344 456777777778889999999999
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCc----c----hHHHHHHHHHhcCChHHHHHHhhhcCC
Q 003937 168 HSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNV----S----SWNVVVSLHIHSGRLDLARAQFDQMIE 239 (785)
Q Consensus 168 ~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~----~~~~li~~~~~~g~~~~A~~l~~~~~~ 239 (785)
+.++++.. +++....---...|-+.|+...|..-|.++-..+. . .--.+++.+...++-+.|.+.++..+.
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999987 56666666677889999999999988887764332 1 222345666677777889888887754
Q ss_pred --C---CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCCh----------------------hhH----HHHHHHH
Q 003937 240 --R---DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDK----------------------FTL----ASTLSAC 288 (785)
Q Consensus 240 --~---~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~----------------------~t~----~~ll~~~ 288 (785)
. +...+|.++..|.+...++.|......+ ......+|. ..| .-+.-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~-~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDD-RNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHH-hccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhh
Confidence 2 4456889999999999999999988887 442222221 111 1233334
Q ss_pred hcccchhhHHHHHHHHHHhc--CCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC--chHhHHHHHHHHHhcCCHHH
Q 003937 289 ANLEKLKLGKQIHAYIIRTE--FDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL--NVIAFTTLLDGYIKIGDIGP 364 (785)
Q Consensus 289 ~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~ 364 (785)
...+..+....+.....+.. ..-+...+.-+.++|...|++.+|+.+|..+...++ +...|-.+..+|...|..++
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 56677777777777777777 445667888999999999999999999999888776 67799999999999999999
Q ss_pred HHHHHHhcCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHHH--------cCCCCCHhhHHHHHHHHhccCchHHHHH
Q 003937 365 ARRIFDSLRDRD---VVAWTAMLVGYEQNGLNKDAVELFRSMVR--------EGPKPNNYTLSAMLSVSSSLASLDHGKQ 433 (785)
Q Consensus 365 A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 433 (785)
|...|+.+..-+ ...--+|-..+.+.|+.++|++.+..|.. .+..|+..........+.+.|+.++-..
T Consensus 468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 999999987633 33444566778999999999999998642 2234444444445556667777766544
Q ss_pred HHHHHHHhC----------------------CCCchHHHHHHHHHHHhcCCHHHHHHHHHhc------ccC-CChhHH--
Q 003937 434 IHASALRSG----------------------EASSLSVSNALITMYSKAGNINAARRVFNLI------HWR-QETVSW-- 482 (785)
Q Consensus 434 ~~~~~~~~g----------------------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~------~~~-p~~~~~-- 482 (785)
+-..++... ..........++.+-.+.++.....+-...- ..+ -...-|
T Consensus 548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe 627 (895)
T KOG2076|consen 548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE 627 (895)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence 444333211 1112222233333333333322221111100 000 011223
Q ss_pred --HHHHHHHHHcCChHHHHHHHHHHHHCCC--CCCH-H-HH-HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC---chh
Q 003937 483 --TSMIVALAQHGLGEEAIQLFERMLELGI--KPDH-I-TY-VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT---PSH 552 (785)
Q Consensus 483 --~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~-~-t~-~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~ 552 (785)
.-++..+++.++.++|+.+...+.+..+ .++. . .+ ...+.++...+++..|..++..|....+...+ ...
T Consensus 628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l 707 (895)
T KOG2076|consen 628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL 707 (895)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4567789999999999999998887542 2222 1 22 34556778899999999999999875443333 345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 003937 553 FASMVDLLGRAGLLQEAYNFIENM-PLEPDVVAWGSLLSA--CRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSC 629 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 629 (785)
|++....+.+.|+-.-=.+++... ..+|+......++.| ....+.+.-|...+-++....|++|.+-.+|+-++.+.
T Consensus 708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 665556666666544444444444 233443233333443 35667788899999999999999898777777776543
No 31
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.3e-12 Score=127.43 Aligned_cols=247 Identities=17% Similarity=0.191 Sum_probs=164.5
Q ss_pred hhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCc
Q 003937 234 FDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATG 313 (785)
Q Consensus 234 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~ 313 (785)
+-+...+...+|..||.|+++-...+.|.+++++. .....+.+..+|+.+|.+-+ +..++++...|+...+.||.
T Consensus 199 ~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~-~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 199 LFETLPKTDETVSIMIAGLCKFSSLERARELYKEH-RAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHH-HHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCch
Confidence 33333456677888888888887788888888877 77777777778887777654 33346777888888888888
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHH
Q 003937 314 PVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLR----DRDVVAWTAMLVGYEQ 389 (785)
Q Consensus 314 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~ 389 (785)
.++|+++....+.|+++.|.+.+ .+++.+|. +|...+|..+|.-+++
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aa-----------------------------lqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAA-----------------------------LQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHH-----------------------------HHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 88888888888888666544322 22222222 3555666666666666
Q ss_pred cCChhH-HHHHHHHHHH----cCCCC----CHhhHHHHHHHHhccCchHHHHHHHHHHHHh----CCCCc---hHHHHHH
Q 003937 390 NGLNKD-AVELFRSMVR----EGPKP----NNYTLSAMLSVSSSLASLDHGKQIHASALRS----GEASS---LSVSNAL 453 (785)
Q Consensus 390 ~g~~~~-A~~~~~~m~~----~g~~p----~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~~~---~~~~~~l 453 (785)
.++..+ |..+..+.+. ..++| |..-|.+.+..|.+..+.+.|.+++...... -+.|+ ..-|..+
T Consensus 325 e~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~ 404 (625)
T KOG4422|consen 325 ESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKF 404 (625)
T ss_pred cCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHH
Confidence 555533 4444444432 22333 4556788889999999999999998876543 12232 3455667
Q ss_pred HHHHHhcCCHHHHHHHHHhcccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 003937 454 ITMYSKAGNINAARRVFNLIHWR---QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH 514 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 514 (785)
.+..+....++.-...++.|..+ |+..+-.-++.+....|.++-.-+++..|+..|..-+.
T Consensus 405 ~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~ 468 (625)
T KOG4422|consen 405 FDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS 468 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH
Confidence 77888888888888888888644 56666667777777788877777777777776644333
No 32
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.65 E-value=7.2e-11 Score=126.51 Aligned_cols=604 Identities=14% Similarity=0.067 Sum_probs=375.9
Q ss_pred cCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhc---CCCCChhhHHHHHHHHHccCChhHHHHH
Q 003937 25 KSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDE---MPVKTLCSWNTILSAYAKQGRLDLACEV 101 (785)
Q Consensus 25 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~ 101 (785)
..|+++.|..++..+++.. +.....|..|...|-..|+..++...+-. +...|...|..+-....+.|.++.|+-.
T Consensus 151 arg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 3499999999999999876 55678899999999999999988776543 3345778899999999999999999999
Q ss_pred HhhCCCCCccHHHH---HHHHHHhCCChhHHHHHHHHhHHCCCCCCh----hhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 003937 102 FNLMPNRDSVSWTT---IIVTYNEIGRFKNAIRMFVEMVQDQVLPTQ----FTVTSVLASCTALGDLSAGKKVHSFVVKT 174 (785)
Q Consensus 102 f~~m~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 174 (785)
|.+..+.++.-|-. =+..|-+.|+...|.+-|.++.+...+.|- .+-..+++.+...++-+.|.+.++...+.
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 99887644443433 356778899999999999999875432222 23334456677777778888887777763
Q ss_pred C-CCCChhHHHHHHHHHHhCCChHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHhhhc-CCCCcccHHH-
Q 003937 175 G-LSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRL----KNVSSWNVVVSLHIHSGRLDLARAQFDQM-IERDVVTWNS- 247 (785)
Q Consensus 175 g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~~-~~~~~~~~~~- 247 (785)
+ -..+...++.++..|.+...++.|......+.. +|..-|.+- +.-..-+.-. ..++..+|+.
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~----------~~~~~~~~~~~~~~~~~s~~l~ 379 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTD----------ERRREEPNALCEVGKELSYDLR 379 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhh----------hhccccccccccCCCCCCccch
Confidence 3 244556778888888888888888777655542 111100000 0000000000 0112222221
Q ss_pred ---HHHHHh--hCCCchHHHHHHHHhhhcCC--CCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHH
Q 003937 248 ---MIAGYS--QNGYDFEALGMFANMLKDSS--LKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALI 320 (785)
Q Consensus 248 ---li~~~~--~~g~~~~A~~l~~~ml~~~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 320 (785)
+.-++. +.+...+++.-|. .... +.-+...|.-+..++.+.|.+..|..++..+......-+..+|-.+.
T Consensus 380 v~rl~icL~~L~~~e~~e~ll~~l---~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 380 VIRLMICLVHLKERELLEALLHFL---VEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred hHhHhhhhhcccccchHHHHHHHH---HHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 111222 2333444444333 3333 23344567777788888888888888888888776666677888888
Q ss_pred HHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCH------------hHHHHHHHHH
Q 003937 321 SCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDV------------VAWTAMLVGY 387 (785)
Q Consensus 321 ~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~------------~~~~~li~~~ 387 (785)
.+|...|..++|.+.|+......| +.....+|...+.+.|+.++|...++.+..||. ..--.....+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l 536 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL 536 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence 888888888888888888766655 567778888888888888888888888765541 1112233456
Q ss_pred HHcCChhHHHHHHHHHHHcC----------------------CCCCHhhHHHHHHHHhccCchHHHHH------HHHHHH
Q 003937 388 EQNGLNKDAVELFRSMVREG----------------------PKPNNYTLSAMLSVSSSLASLDHGKQ------IHASAL 439 (785)
Q Consensus 388 ~~~g~~~~A~~~~~~m~~~g----------------------~~p~~~t~~~ll~a~~~~~~~~~a~~------~~~~~~ 439 (785)
.+.|+.++=+.+-.+|+... .+-...+...+..+-.+.++....+. ......
T Consensus 537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e 616 (895)
T KOG2076|consen 537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE 616 (895)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence 66777766555555554321 11122222223333333332111111 111112
Q ss_pred HhCCCCch--HHHHHHHHHHHhcCCHHHHHHHHHhcccC----CChh----HHHHHHHHHHHcCChHHHHHHHHHHHHC-
Q 003937 440 RSGEASSL--SVSNALITMYSKAGNINAARRVFNLIHWR----QETV----SWTSMIVALAQHGLGEEAIQLFERMLEL- 508 (785)
Q Consensus 440 ~~g~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~~----p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~- 508 (785)
..|+..+. ..+.-++..+++.|++++|+.+...+..- .+.. .-..++.+....+++..|...++.|...
T Consensus 617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~ 696 (895)
T KOG2076|consen 617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQF 696 (895)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 22333332 35567788899999999999998776422 1222 2345667778899999999999999874
Q ss_pred CC--CCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhH--HHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 003937 509 GI--KPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHF--ASMVDLLGRAGLLQEAYNFIENM-PLEPDV 582 (785)
Q Consensus 509 g~--~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 582 (785)
+. .|... .|+..++...+.|+-.--.+++..+. ...|+-.+. ......+..++.+.-|+..+-+. ...||.
T Consensus 697 ~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~---~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~ 773 (895)
T KOG2076|consen 697 QFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLL---VKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDS 773 (895)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCC
Confidence 11 34333 45545555555444333233332222 122222122 22223456778888888765554 345665
Q ss_pred HHHHHHHHHH-----------HhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 583 VAWGSLLSAC-----------RVHKNLDLGKIAAEKLLLIEPD--NSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 583 ~~~~~ll~~~-----------~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...+.+++.- .+|-.+-+|...+.+..++.-. ...++..++.+|-..|-..-|..++++..+-
T Consensus 774 Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 774 PLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 5555444431 2344556777888777776543 5678999999999999999999999999764
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.62 E-value=6.2e-12 Score=133.60 Aligned_cols=320 Identities=12% Similarity=0.019 Sum_probs=186.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCH------hHHHHHHHHHHHc
Q 003937 317 NALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDV------VAWTAMLVGYEQN 390 (785)
Q Consensus 317 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~------~~~~~li~~~~~~ 390 (785)
+.++..++..-+..+++..-+..... .-...|..||+-+......+.|..+.++...++. .-+..+.+...+.
T Consensus 463 ~ql~l~l~se~n~lK~l~~~ekye~~-lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~ 541 (1088)
T KOG4318|consen 463 NQLHLTLNSEYNKLKILCDEEKYEDL-LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL 541 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh
Confidence 44555555555555554333322111 1125688999999999999999999999887644 4577788888999
Q ss_pred CChhHHHHHHHHHHHcCC-CCC-HhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 003937 391 GLNKDAVELFRSMVREGP-KPN-NYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARR 468 (785)
Q Consensus 391 g~~~~A~~~~~~m~~~g~-~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 468 (785)
+...++..++.+|.+.-. .|+ ..++-.+++..+..|+.+..+++++.+...|+..+ .-|+....+.++...|.+
T Consensus 542 ~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~e 617 (1088)
T KOG4318|consen 542 AILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQE 617 (1088)
T ss_pred HHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhh
Confidence 999999999999987422 222 34556677888888999999999999888876553 334445566788888888
Q ss_pred HHHhcccC--CChhHHHHHHHHHHH--cCChHHHHHHHHHHH---HCCC--CCCHHHHH-HHH-----HHhhccCCHHHH
Q 003937 469 VFNLIHWR--QETVSWTSMIVALAQ--HGLGEEAIQLFERML---ELGI--KPDHITYV-GVL-----TACTHGGLVEQG 533 (785)
Q Consensus 469 ~~~~~~~~--p~~~~~~~li~~~~~--~g~~~~A~~~~~~m~---~~g~--~p~~~t~~-~ll-----~a~~~~g~~~~a 533 (785)
+++....+ |.+..-..+...+-+ ..+++++..+-.... +.|- .|-.++=. .+. .-|...|...--
T Consensus 618 a~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~l 697 (1088)
T KOG4318|consen 618 APEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPL 697 (1088)
T ss_pred cchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccH
Confidence 77655322 222211111111111 111222222111110 0000 00000000 000 111122222222
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHK---NLDLGKIAAEKLLL 610 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~ 610 (785)
....+.+.+ .....-|+..|.+.|+++.|..++.++++.|+..+..-|...++.+. ++-++..-.+++.+
T Consensus 698 Ell~elt~~-------lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~ 770 (1088)
T KOG4318|consen 698 ELLLELTHE-------LGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASE 770 (1088)
T ss_pred HHHHHHHhH-------hHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHh
Confidence 222222221 11223377899999999999999999998888888887877776654 45566666777776
Q ss_pred hCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 003937 611 IEPDNS---GAYSALCNLYSSCGKWEDAANIRKSMKYVGVK 648 (785)
Q Consensus 611 ~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 648 (785)
+.|..+ ..|.-.+....+....+-|.+.+.+.++....
T Consensus 771 ~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v 811 (1088)
T KOG4318|consen 771 LRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTV 811 (1088)
T ss_pred cccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCC
Confidence 655433 33444444444445555788899999887443
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=3e-12 Score=125.57 Aligned_cols=271 Identities=15% Similarity=0.145 Sum_probs=198.2
Q ss_pred HHHhcCCHHHHHHHHHhcCCCCHhHH-----HHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCch
Q 003937 355 GYIKIGDIGPARRIFDSLRDRDVVAW-----TAMLVGYEQNG-LNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASL 428 (785)
Q Consensus 355 ~~~~~g~~~~A~~~f~~~~~~~~~~~-----~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 428 (785)
-|.+.|+++.|.++++-...+|..+- |.-.--|.+-| ++.+|...-+..+... +-|....+.--+.....|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 46677888888888777766543322 22222334433 4555655555443321 12222222222233456889
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc--cCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003937 429 DHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIH--WRQETVSWTSMIVALAQHGLGEEAIQLFERML 506 (785)
Q Consensus 429 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 506 (785)
++|.+.+.+.....-.-....||. .-.+-+.|++++|+..|-++. ...++...-.+.+.|-...++..|++++.+..
T Consensus 507 dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 999999988876543333333332 224677899999999998775 22366677778888988999999999998776
Q ss_pred HCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH
Q 003937 507 ELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVVA 584 (785)
Q Consensus 507 ~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 584 (785)
. +-| |+..+..|...|-+.|+-.+|.+++-.--+ -++-++++...|..-|....-+++|..+|++. -++|+.+-
T Consensus 586 s--lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~k 661 (840)
T KOG2003|consen 586 S--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSK 661 (840)
T ss_pred c--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHH
Confidence 6 555 556888899999999999999998765432 35567888899999999999999999999998 47899999
Q ss_pred HHHHHHHH-HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 585 WGSLLSAC-RVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 585 ~~~ll~~~-~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
|..++..| ++.|++..|..+++......|.|....-.|..++...|.
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999886 678999999999999999999999999999999998885
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=7.5e-10 Score=114.22 Aligned_cols=491 Identities=12% Similarity=0.131 Sum_probs=330.2
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHhhCCC---CCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHH
Q 003937 78 TLCSWNTILSAYAKQGRLDLACEVFNLMPN---RDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLAS 154 (785)
Q Consensus 78 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~ 154 (785)
++..|...+ ..-..++|+-++.+..+ .....| -+|++..-++.|..++...++ .++.+...|.+....
T Consensus 379 sv~LWKaAV----elE~~~darilL~rAveccp~s~dLw----lAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~L 449 (913)
T KOG0495|consen 379 SVRLWKAAV----ELEEPEDARILLERAVECCPQSMDLW----LALARLETYENAKKVLNKARE-IIPTDREIWITAAKL 449 (913)
T ss_pred hHHHHHHHH----hccChHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHH
Confidence 344554433 33445567776666554 122233 344555666777777777665 245566666665555
Q ss_pred HhccCChhHHHHHHHHHH----HhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCC------CcchHHHHHHHHHhc
Q 003937 155 CTALGDLSAGKKVHSFVV----KTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLK------NVSSWNVVVSLHIHS 224 (785)
Q Consensus 155 ~~~~g~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~ 224 (785)
=-..|..+...++..+-+ ..|+..+..-|-.=...+-+.|..-.+..+......- --.||+.-...+.+.
T Consensus 450 EE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~ 529 (913)
T KOG0495|consen 450 EEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKR 529 (913)
T ss_pred HHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhc
Confidence 556666666666655443 3466666666655556666666666666655544311 134666666677777
Q ss_pred CChHHHHHHhhhcCC---CCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHH
Q 003937 225 GRLDLARAQFDQMIE---RDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIH 301 (785)
Q Consensus 225 g~~~~A~~l~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 301 (785)
+.++-|..+|...++ .+...|...+..--..|..++-..+|++.+.. .|.
T Consensus 530 ~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~---~pk------------------------ 582 (913)
T KOG0495|consen 530 PAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ---CPK------------------------ 582 (913)
T ss_pred chHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---CCc------------------------
Confidence 777777766665533 35566766666656667777777777766322 121
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHh
Q 003937 302 AYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD--RDVV 378 (785)
Q Consensus 302 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~ 378 (785)
....+-....-+-..|++..|..++.+.-+..| +...|..-+.....+.+++.|+.+|..... +...
T Consensus 583 ----------ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeR 652 (913)
T KOG0495|consen 583 ----------AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTER 652 (913)
T ss_pred ----------chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch
Confidence 112233334445566777777777776555444 556777777777777788888888877664 4556
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003937 379 AWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYT-LSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY 457 (785)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 457 (785)
.|.--+..---.++.++|++++++.++. -|+..- |..+-+.+-+.++++.|+..|..=.+. ++..+..|-.|.+.-
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakle 729 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLE 729 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHH
Confidence 6666565556678888899888887763 566544 444445667777777777776544332 455677888888888
Q ss_pred HhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 003937 458 SKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQR 535 (785)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 535 (785)
-+.|.+-.|..+|++...+ .+...|-..|..-.+.|..+.|..+..+.++. ++-+...|..-|....+.++-.....
T Consensus 730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHH
Confidence 9999999999999987533 47889999999999999999999999888874 34444577777766666665433333
Q ss_pred HHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 536 YYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 536 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
.++ ..+-|..+.-++..++-...++++|.+.|.+. ...|| -.+|.-+..-+.+||.-+.-.+++.+...-+|
T Consensus 809 ALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 809 ALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 332 34567777788888999999999999999988 66776 56898899999999999999999999999999
Q ss_pred CCchhHHHHHH
Q 003937 614 DNSGAYSALCN 624 (785)
Q Consensus 614 ~~~~~~~~l~~ 624 (785)
.....|.....
T Consensus 883 ~hG~~W~avSK 893 (913)
T KOG0495|consen 883 THGELWQAVSK 893 (913)
T ss_pred CCCcHHHHHhh
Confidence 77766655543
No 36
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=1.3e-10 Score=123.85 Aligned_cols=553 Identities=9% Similarity=0.039 Sum_probs=309.9
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCC----ChhhHHHHHHHHHccCChhHHHHHHhhCCCCC
Q 003937 34 LVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVK----TLCSWNTILSAYAKQGRLDLACEVFNLMPNRD 109 (785)
Q Consensus 34 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~ 109 (785)
.++..+...|+.|+..+|.+++.-|+..|+++.|- +|..|.-+ +...++.++.+..++++.+.|. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 45667778899999999999999999999999998 88888743 5668999999999999877664 678
Q ss_pred ccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHH-HhCCCCChhHHHHHHH
Q 003937 110 SVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVV-KTGLSGCVNVTNSLLN 188 (785)
Q Consensus 110 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~-~~g~~~~~~~~~~li~ 188 (785)
..+|+.|..+|.+.|+... ++..++- .-.+...++..|--..-..++-.+. ..++-||.. .++.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veqd-----------Le~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQD-----------LESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHHH-----------HHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8899999999999998765 3333331 1122233333333333333332211 112233332 2333
Q ss_pred HHHhCCChHHHHHHHhcCCCCCc-chHHHHHHHHHhc-CChHHHHHHhhhcC-CCCcccHHHHHHHHhhCCCchHHHHHH
Q 003937 189 MYAKVGDEMMAKAVFDGMRLKNV-SSWNVVVSLHIHS-GRLDLARAQFDQMI-ERDVVTWNSMIAGYSQNGYDFEALGMF 265 (785)
Q Consensus 189 ~~~~~g~~~~A~~~~~~m~~~~~-~~~~~li~~~~~~-g~~~~A~~l~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~ 265 (785)
...-.|-++.+.+++..+|...- .+...+++-.... ..+++-...-.... .+++.+|.+++..-..+|+.+.|..++
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll 227 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL 227 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence 34445667777777777762110 0111112211111 22233333333333 489999999999999999999999999
Q ss_pred HHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCc
Q 003937 266 ANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLN 345 (785)
Q Consensus 266 ~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 345 (785)
.+| ++.|+..+..-|..++-+ .++....+.+..-|...|+.|+..|+.-.+-...+.|....+....+. .....
T Consensus 228 ~em-ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~--~hg~t 301 (1088)
T KOG4318|consen 228 YEM-KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQL--AHGFT 301 (1088)
T ss_pred HHH-HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccch--hhhhh
Confidence 999 999999998888877766 788888899999999999999999998888777775532211111000 00001
Q ss_pred hHhHHHHHHHHHhcCCHHHH--HHHHHhcCC-------CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCCCHh-
Q 003937 346 VIAFTTLLDGYIKIGDIGPA--RRIFDSLRD-------RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREG--PKPNNY- 413 (785)
Q Consensus 346 ~~~~~~li~~~~~~g~~~~A--~~~f~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~- 413 (785)
...+..+.++..-..+++.- .-+....++ .....|.. +.-....|..++...+-..|..-- ..|+.+
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~-c~~l~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSM-CEKLRHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHH-HHHHHHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 22233333331111111111 111111111 11122322 222222455555555544443211 111110
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcC
Q 003937 414 TLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHG 493 (785)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g 493 (785)
.|. ...++.|..+.+.....-..++ ..+..........+..+..... +||... ..+..-
T Consensus 381 a~~------------~~lrqyFrr~e~~~~~~i~~~~-qgls~~l~se~tp~vsell~~l--rkns~l-r~lv~L----- 439 (1088)
T KOG4318|consen 381 AFG------------ALLRQYFRRIERHICSRIYYAG-QGLSLNLNSEDTPRVSELLENL--RKNSFL-RQLVGL----- 439 (1088)
T ss_pred HHH------------HHHHHHHHHHHhhHHHHHHHHH-HHHHhhhchhhhHHHHHHHHHh--CcchHH-HHHhhh-----
Confidence 011 1223333333322111100000 0111100011111111111111 112110 000000
Q ss_pred ChHHHHHHHHHHHHCCCCC-------CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCH
Q 003937 494 LGEEAIQLFERMLELGIKP-------DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLL 566 (785)
Q Consensus 494 ~~~~A~~~~~~m~~~g~~p-------~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (785)
..+ +... -..| =...-+.++..|...-+..++...-+.... .-+ | ..|..||+.+.....+
T Consensus 440 --ss~-----Eler-~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~-~lf-~--g~ya~Li~l~~~hdkl 507 (1088)
T KOG4318|consen 440 --SST-----ELER-SHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYED-LLF-A--GLYALLIKLMDLHDKL 507 (1088)
T ss_pred --hHH-----HHhc-ccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-h--hHHHHHhhhHHHHHHH
Confidence 000 0000 0111 112334555566665555666544433332 111 2 5689999999999999
Q ss_pred HHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---hCCCCchhHHHHHHHHHhcCChHHHHHH
Q 003937 567 QEAYNFIENMP-----LEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLL---IEPDNSGAYSALCNLYSSCGKWEDAANI 638 (785)
Q Consensus 567 ~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 638 (785)
++|..+.++.. +.-|..-+..+.+...+++....+..+++.+.+ ..|.-..++..+.+.-+..|+.+...++
T Consensus 508 e~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl 587 (1088)
T KOG4318|consen 508 EYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKL 587 (1088)
T ss_pred HHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHH
Confidence 99999999884 223445677888888999999999999888876 2343456777888999999999999999
Q ss_pred HHHHHhCCCcc
Q 003937 639 RKSMKYVGVKK 649 (785)
Q Consensus 639 ~~~m~~~g~~~ 649 (785)
.+-....|+..
T Consensus 588 ~d~lvslgl~e 598 (1088)
T KOG4318|consen 588 ADILVSLGLSE 598 (1088)
T ss_pred HHHHHHhhhhh
Confidence 99999888865
No 37
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.48 E-value=1.5e-13 Score=139.30 Aligned_cols=255 Identities=18% Similarity=0.184 Sum_probs=110.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHH-HHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 003937 384 LVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLS-VSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGN 462 (785)
Q Consensus 384 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 462 (785)
...+.+.|++++|++++++-......|+...|-.++. .+...++.+.|...+..+...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 4445566666777766654433322344444444333 334456677777777766655433 44455666666 67888
Q ss_pred HHHHHHHHHhccc-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 003937 463 INAARRVFNLIHW-RQETVSWTSMIVALAQHGLGEEAIQLFERMLELG-IKPDHITYVGVLTACTHGGLVEQGQRYYNMM 540 (785)
Q Consensus 463 ~~~A~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 540 (785)
+++|.+++...-. .++...|..++..+...++++++.+++++..... .+++...|..+...+.+.|+.++|.+.+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999888876532 2467778888888999999999999999977533 2345567778888889999999999999988
Q ss_pred hhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 003937 541 KNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENMP--LEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 541 ~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 617 (785)
.+ ..|+ ......++..+...|+.+++.++++... .+.|...|..+..++...|+.++|...++++....|+|+.
T Consensus 173 l~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 76 3454 7778889999999999999887777661 2345667889999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 618 AYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 618 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
....++.++...|+.++|.+++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999988764
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=3.6e-11 Score=118.21 Aligned_cols=162 Identities=14% Similarity=0.149 Sum_probs=95.8
Q ss_pred HHHHHHHhhcCCCcchHHHHHHHHHH----cCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC----CChh-hHHHHH
Q 003937 16 YAHLLQSNLKSRNPFVGKLVHARIIK----CGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV----KTLC-SWNTIL 86 (785)
Q Consensus 16 ~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~li 86 (785)
|...|...-..|+-+.+.--|..-.. .++..+-.+...|.+-|..+....+|...|+-+.. ||.- .--.+-
T Consensus 165 ~k~aldkakdagrker~lvk~req~~~~e~inldltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnig 244 (840)
T KOG2003|consen 165 FKEALDKAKDAGRKERALVKHREQQGLPEMINLDLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIG 244 (840)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHhccchhhccccchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeec
Confidence 34444444455665655554443221 23344445555666667777777778777776543 1111 111233
Q ss_pred HHHHccCChhHHHHHHh----hCCCCCc----cHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhcc
Q 003937 87 SAYAKQGRLDLACEVFN----LMPNRDS----VSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTAL 158 (785)
Q Consensus 87 ~~~~~~g~~~~A~~~f~----~m~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 158 (785)
..+.+...+..|.+.++ +.|+-+. ...|.+--.+.+.|.++.|+.-|+...+. .||-.+-..|+-++...
T Consensus 245 ni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i 322 (840)
T KOG2003|consen 245 NIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAI 322 (840)
T ss_pred ceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheec
Confidence 45566677777777654 3343222 23444455677889999999988887653 57776555555555567
Q ss_pred CChhHHHHHHHHHHHhCCCCC
Q 003937 159 GDLSAGKKVHSFVVKTGLSGC 179 (785)
Q Consensus 159 g~~~~a~~~~~~~~~~g~~~~ 179 (785)
|+.+..++.|..|+.....+|
T Consensus 323 ~d~ekmkeaf~kli~ip~~~d 343 (840)
T KOG2003|consen 323 GDAEKMKEAFQKLIDIPGEID 343 (840)
T ss_pred CcHHHHHHHHHHHhcCCCCCC
Confidence 888888888888887644443
No 39
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.44 E-value=8.2e-09 Score=102.76 Aligned_cols=491 Identities=13% Similarity=0.118 Sum_probs=287.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 003937 112 SWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYA 191 (785)
Q Consensus 112 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 191 (785)
.|--..+-=...+++..|..+|++.+... ..+...|..-+..=-+...+..|+.+++..+..-.. -...|--.+.+--
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE 152 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEE 152 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHH
Confidence 34433334445667777777887776532 223333444444445666777788888777765322 2233444555555
Q ss_pred hCCChHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChHHHHHHhhhc--CCCCcccHHHHHHHHhhCCCchHHHHHHHH
Q 003937 192 KVGDEMMAKAVFDGMR--LKNVSSWNVVVSLHIHSGRLDLARAQFDQM--IERDVVTWNSMIAGYSQNGYDFEALGMFAN 267 (785)
Q Consensus 192 ~~g~~~~A~~~~~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 267 (785)
..|++..|+++|+.-. +|+...|++.|+.-.+...++.|..++++. ..|++.+|--....=.++|+...|..+|..
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 6677888888887643 677777777777777777777777777765 457777777777766777777777777776
Q ss_pred hhhcCCCCCChhhHHHHHHHHh----cccchhhHHHHHHHHHHhcCCCC-cchHHHHHHHHHhcCChHHHHHH-------
Q 003937 268 MLKDSSLKPDKFTLASTLSACA----NLEKLKLGKQIHAYIIRTEFDAT-GPVGNALISCYAKVGGVEIAQKI------- 335 (785)
Q Consensus 268 ml~~~g~~p~~~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~------- 335 (785)
.+...| |...-..++.+++ +.+..+.|+.++...+..-.... ..++..+...--+.|+.......
T Consensus 233 Aie~~~---~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~ 309 (677)
T KOG1915|consen 233 AIEFLG---DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF 309 (677)
T ss_pred HHHHhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence 633322 2222233333333 34455666666666655432211 23334444444444444333322
Q ss_pred -HHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-
Q 003937 336 -VEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNN- 412 (785)
Q Consensus 336 -~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~- 412 (785)
++++...+| |-.+|.-+ +..--..|+.+...++|+....+ ++|-.
T Consensus 310 qYE~~v~~np~nYDsWfdy-------------------------------lrL~e~~g~~~~Ire~yErAIan-vpp~~e 357 (677)
T KOG1915|consen 310 QYEKEVSKNPYNYDSWFDY-------------------------------LRLEESVGDKDRIRETYERAIAN-VPPASE 357 (677)
T ss_pred HHHHHHHhCCCCchHHHHH-------------------------------HHHHHhcCCHHHHHHHHHHHHcc-CCchhH
Confidence 112222222 34444444 44444445555555555555432 23311
Q ss_pred ------hhHHHHHHHH---hccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHH----hcCCHHHHHHHHHhcc-cCCC
Q 003937 413 ------YTLSAMLSVS---SSLASLDHGKQIHASALRSGEASSLSVSNALITMYS----KAGNINAARRVFNLIH-WRQE 478 (785)
Q Consensus 413 ------~t~~~ll~a~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~----~~g~~~~A~~~~~~~~-~~p~ 478 (785)
..|.-+=-+| ....+++.+++++...++ -++...+++.-+--+|+ ++.++..|.+++-... .-|.
T Consensus 358 kr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK 436 (677)
T KOG1915|consen 358 KRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK 436 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc
Confidence 1111111111 234566666666666666 34445555555544444 5678888888886543 3467
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHH
Q 003937 479 TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMV 557 (785)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 557 (785)
..++...|..=.+.+.++....++++.++ ..| |..+|......-...|+.+.|..+|+.......+......|.+.|
T Consensus 437 ~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 437 DKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYI 514 (677)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 77777777777788888888888888888 455 446777777777778888888888888776434444455677777
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHhh----CCCC-
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEPDVVAWGSLLSACR-----VHK-----------NLDLGKIAAEKLLLI----EPDN- 615 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~~----~p~~- 615 (785)
+-=...|.++.|..+++++ ...+...+|-++..--. +.+ ++..|..+|+++... .|..
T Consensus 515 dFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~Kee 594 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEE 594 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHH
Confidence 7778888888888888887 33455557766655422 333 566788888888652 3321
Q ss_pred -chhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 616 -SGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 616 -~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
........+.=...|...+...+-.+|
T Consensus 595 R~~LLEaw~~~E~~~G~~~d~~~V~s~m 622 (677)
T KOG1915|consen 595 RLMLLEAWKNMEETFGTEGDVERVQSKM 622 (677)
T ss_pred HHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence 122334444555667777777766666
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=3.8e-09 Score=105.08 Aligned_cols=373 Identities=16% Similarity=0.155 Sum_probs=215.3
Q ss_pred CCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC--C-ChhhHHHHHHHHHccCChhHHHHHH
Q 003937 26 SRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV--K-TLCSWNTILSAYAKQGRLDLACEVF 102 (785)
Q Consensus 26 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~f 102 (785)
++++..|+.+|+..+.-. ..+..+|-..+.+-.++..+..|+.+++.... | --..|-..+-+=-..|++..|+++|
T Consensus 86 q~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 456667888888887655 55677888888888899999999999987642 2 2235666666666788899999999
Q ss_pred hhCC--CCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHh-CC-CC
Q 003937 103 NLMP--NRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKT-GL-SG 178 (785)
Q Consensus 103 ~~m~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~-g~-~~ 178 (785)
++-. +|+..+|++.|.-=.+-...+.|..++++.+- +.|+..+|..-.+.=-+.|....++++++.+++. |- ..
T Consensus 165 erW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 165 ERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred HHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 8754 58888999999988888899999999998875 5688888887777777888888888888887765 21 11
Q ss_pred ChhHHHHHHHHHHhCCChHHHHHHHh----cCCCC-------------------------------------------Cc
Q 003937 179 CVNVTNSLLNMYAKVGDEMMAKAVFD----GMRLK-------------------------------------------NV 211 (785)
Q Consensus 179 ~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~~-------------------------------------------~~ 211 (785)
+...+.+....-.++..++.|+-+|+ .++.. |-
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY 322 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY 322 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc
Confidence 22334444444445556666666653 33311 22
Q ss_pred chHHHHHHHHHhcCChHHHHHHhhhcCCCC-----cccHHHHHH--------HHhhCCCchHHHHHHHHhhhcCCCCCCh
Q 003937 212 SSWNVVVSLHIHSGRLDLARAQFDQMIERD-----VVTWNSMIA--------GYSQNGYDFEALGMFANMLKDSSLKPDK 278 (785)
Q Consensus 212 ~~~~~li~~~~~~g~~~~A~~l~~~~~~~~-----~~~~~~li~--------~~~~~g~~~~A~~l~~~ml~~~g~~p~~ 278 (785)
.+|-..+......|+.+...++|++.+..- -..|.-.|. .=....+.+.+.++|+..+. =++-..
T Consensus 323 DsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPHkk 400 (677)
T KOG1915|consen 323 DSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPHKK 400 (677)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCccc
Confidence 244444444444455555555555442210 011111111 11223444445555544421 122233
Q ss_pred hhHHHHHHHHh----cccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHH
Q 003937 279 FTLASTLSACA----NLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLL 353 (785)
Q Consensus 279 ~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li 353 (785)
+||.-+--.++ +..++..|+++++..+ |..|...++...|..-.+.++++.+.+++++...-+| |..+|....
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kya 478 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYA 478 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHH
Confidence 44443333222 3344555555554432 4444455555555555555555555555555444443 445555555
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-C----CHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003937 354 DGYIKIGDIGPARRIFDSLRD-R----DVVAWTAMLVGYEQNGLNKDAVELFRSMVR 405 (785)
Q Consensus 354 ~~~~~~g~~~~A~~~f~~~~~-~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 405 (785)
..-...|+.+.|+.+|+-..+ | ....|-+-|+-=...|.++.|..+|+++++
T Consensus 479 ElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 479 ELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence 555555555555555554432 2 123444444444455555555555555544
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=8.1e-10 Score=110.35 Aligned_cols=214 Identities=14% Similarity=0.180 Sum_probs=167.7
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHH
Q 003937 424 SLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQL 501 (785)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~ 501 (785)
-.|+.-.+.+-++.+++....++. .|--+.-+|....+.++-.+.|+.... +.|..+|---...+.-.+++++|+.=
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 346777778888888776543332 255666778889999999999987642 22555666666666677889999999
Q ss_pred HHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 003937 502 FERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLE 579 (785)
Q Consensus 502 ~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 579 (785)
|++.+. +.|+.+ .|.-+.-+..+.+.++++...|++.++ .++..++.|+-....+.-.++++.|.+.|+.. .+.
T Consensus 417 F~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999988 678664 788887788889999999999999987 45666888999999999999999999999887 444
Q ss_pred CC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 580 PD---------VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 580 p~---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
|+ +.+-.+++-. +=.+++..|..+++++++++|....+|.+|+.+-...|+.++|+++|++-.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 44 2222222222 223899999999999999999999999999999999999999999999864
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.40 E-value=3.2e-11 Score=125.30 Aligned_cols=160 Identities=15% Similarity=0.179 Sum_probs=118.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASM 556 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 556 (785)
.+.+|-++..+|.-+++.+.|++.|++..+ +.|+ ..+|+.+..-+.....+|.|...|+... ..|+.+|+++
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~~rhYnAw 492 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVDPRHYNAW 492 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCCchhhHHH
Confidence 456788888888888888888888888877 6673 4577777666777777788888876554 3566666654
Q ss_pred ---HHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 557 ---VDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 557 ---i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
.-.|.|.++++.|+-.|+++ .+.|. .+....+...+.+.|+.|+|+++++++..++|.|+-.-...+.++...++
T Consensus 493 YGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 493 YGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred HhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 34577888888888877777 66674 55556666667777888888888888888888888877788888888888
Q ss_pred hHHHHHHHHHHHh
Q 003937 632 WEDAANIRKSMKY 644 (785)
Q Consensus 632 ~~~a~~~~~~m~~ 644 (785)
+++|...++++++
T Consensus 573 ~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 573 YVEALQELEELKE 585 (638)
T ss_pred hHHHHHHHHHHHH
Confidence 8888888888765
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.39 E-value=4.4e-10 Score=119.32 Aligned_cols=274 Identities=11% Similarity=0.070 Sum_probs=157.0
Q ss_pred CCHHHHHHHHHhcCCC--CHhH-HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHH--HHHHHHhccCchHHHHHH
Q 003937 360 GDIGPARRIFDSLRDR--DVVA-WTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLS--AMLSVSSSLASLDHGKQI 434 (785)
Q Consensus 360 g~~~~A~~~f~~~~~~--~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~~ 434 (785)
|+++.|++.+....+. ++.. |-.......+.|+++.|...|.++.+. .|+..... .....+...|+.+.|...
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4555555555544332 1222 222222335566666666666666542 33332222 223344556666666666
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCC--Ch--------hHHHHHHHHHHHcCChHHHHHHHHH
Q 003937 435 HASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQ--ET--------VSWTSMIVALAQHGLGEEAIQLFER 504 (785)
Q Consensus 435 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p--~~--------~~~~~li~~~~~~g~~~~A~~~~~~ 504 (785)
++.+.+.. +.+..+...+...|.+.|++++|.+++..+.... +. ..|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 66665544 3345555666677777777777777766664320 11 1223333333333444555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-H
Q 003937 505 MLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-V 582 (785)
Q Consensus 505 m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~ 582 (785)
..+. .+.+......+..++...|+.++|...++...+ ..|+.... ++......|+.+++.+.+++. ...|+ +
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 4332 233455666677777777777777777776654 23443211 222223447777777777766 34554 4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 583 VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
..+.++...|...+++++|...++++++.+| +...+..|..++.+.|+.++|.+++++-.
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRP-DAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566777778888888888888888888888 45567778888888888888888777653
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.39 E-value=1.1e-09 Score=116.44 Aligned_cols=278 Identities=13% Similarity=0.050 Sum_probs=174.9
Q ss_pred cCChHHHHHHHHHhCCCCCchHh-HHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHH--HHHHHHHHcCChhHHHHHH
Q 003937 326 VGGVEIAQKIVEQSGISYLNVIA-FTTLLDGYIKIGDIGPARRIFDSLRD--RDVVAWT--AMLVGYEQNGLNKDAVELF 400 (785)
Q Consensus 326 ~g~~~~A~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~~~ 400 (785)
.|+++.|++.+.......+++.. |........+.|+.+.|...|.++.+ |+....- .....+...|+++.|+..+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 35555555555543333222222 22223333555566666666655543 2211111 1133455556666666666
Q ss_pred HHHHHcCCCCC-HhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCch-------HHHHHHHHHHHhcCCHHHHHHHHHh
Q 003937 401 RSMVREGPKPN-NYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSL-------SVSNALITMYSKAGNINAARRVFNL 472 (785)
Q Consensus 401 ~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~~ 472 (785)
+++.+.. |+ ...+..+...+.+.|+++.+..++..+.+.+..++. ..+..++....+..+.+...++++.
T Consensus 177 ~~~~~~~--P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 177 DKLLEVA--PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHhcC--CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 6655432 32 333444455555666666666666666555433222 1222333334444556667777777
Q ss_pred ccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCc
Q 003937 473 IHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTP 550 (785)
Q Consensus 473 ~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 550 (785)
++. +.++.....+..++...|+.++|.+++++..+ ..||.... ++.+....++.+++.+..+...+ ..+-|.
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~ 328 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTP 328 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCH
Confidence 753 24777888889999999999999999999888 35555321 23344455889999999988876 334456
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
..+.++..++.+.|++++|.+.|+.. ...|+..++..|...+...|+.++|...+++.+.+
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66888899999999999999999988 67899988888999999999999999999998775
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.38 E-value=1.4e-09 Score=116.29 Aligned_cols=283 Identities=11% Similarity=-0.016 Sum_probs=153.2
Q ss_pred HhcCChHHHHHHHHHhCCCCCc-hHhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCH--hHHHHHHHHHHHcCChhHHHH
Q 003937 324 AKVGGVEIAQKIVEQSGISYLN-VIAFTTLLDGYIKIGDIGPARRIFDSLRD--RDV--VAWTAMLVGYEQNGLNKDAVE 398 (785)
Q Consensus 324 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~ 398 (785)
...|+++.|.+.+.+.....|+ ...+-.....+.+.|+.+.|...|.+..+ |+. ...-+....+.+.|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 3467777777777665555443 33444455666677777777777766532 222 222233556666777777777
Q ss_pred HHHHHHHcCCCC-CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH---H----hcCCHHHHHHHH
Q 003937 399 LFRSMVREGPKP-NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY---S----KAGNINAARRVF 470 (785)
Q Consensus 399 ~~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y---~----~~g~~~~A~~~~ 470 (785)
.++.+.+.. | +...+..+...+...|+++.+.+.+..+.+.+..++......-...+ . .....+...+.+
T Consensus 175 ~l~~l~~~~--P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 175 GVDKLLEMA--PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 777777653 4 33345566666777777777777777777765433322211111111 1 122233334444
Q ss_pred HhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH--HHH-HHHhhccCCHHHHHHHHHHhhhcCC
Q 003937 471 NLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITY--VGV-LTACTHGGLVEQGQRYYNMMKNVHK 545 (785)
Q Consensus 471 ~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~l-l~a~~~~g~~~~a~~~~~~m~~~~~ 545 (785)
+..+.+ .+...+..+...+...|+.++|.+++++..+. .||.... ..+ .......++.+.+.+.++...+...
T Consensus 253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 444321 36677777888888888888888888888773 4554321 111 1122233555555555555544221
Q ss_pred CCCCchhHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 546 IKPTPSHFASMVDLLGRAGLLQEAYNFIEN--M-PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 546 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
-.|+.....++...+.+.|++++|.+.|+. . ...||...+..+...+.+.|+.++|.+++++.+.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 111113344555555555556555555552 2 3445555555555555555555555555555433
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.38 E-value=9e-11 Score=122.02 Aligned_cols=274 Identities=16% Similarity=0.152 Sum_probs=201.0
Q ss_pred ChHHHHHHHHHhCCCCCc-hHhHHHHHHHHHhcCCHHHHHHHHHhcCC------CCHhHHHHHHHHHHHcCChhHHHHHH
Q 003937 328 GVEIAQKIVEQSGISYLN-VIAFTTLLDGYIKIGDIGPARRIFDSLRD------RDVVAWTAMLVGYEQNGLNKDAVELF 400 (785)
Q Consensus 328 ~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~ 400 (785)
+..+|...|+++....+| .+....+..+|...+++++|.++|+.+.+ .+...|.+.+..+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 567888888886665554 46677788999999999999999998875 366788887765533 2233333
Q ss_pred H-HHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-C-
Q 003937 401 R-SMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-Q- 477 (785)
Q Consensus 401 ~-~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p- 477 (785)
. ++... .| ..+.+|.++.+.|+-+++.+.|++.|++...- |
T Consensus 410 aq~Li~~--~~----------------------------------~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~ 453 (638)
T KOG1126|consen 410 AQDLIDT--DP----------------------------------NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR 453 (638)
T ss_pred HHHHHhh--CC----------------------------------CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc
Confidence 2 23221 12 23344566677777777788888888765432 2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFAS 555 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 555 (785)
...+|+.+..-+.....+|+|...|+..+. +.|... .|-.+.-.|.+.+.++.|.-.|+++.+ +.|. .....+
T Consensus 454 faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~ 528 (638)
T KOG1126|consen 454 FAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCH 528 (638)
T ss_pred cchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhh
Confidence 566777777777888888888888888766 566654 777777888888888999888887764 5555 455666
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChH
Q 003937 556 MVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWE 633 (785)
Q Consensus 556 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 633 (785)
+...+-+.|+.|+|+.+++++ .++| |+..----...+...++.++|...+|++.++-|++...|..++.+|-+.|+.+
T Consensus 529 ~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 529 IGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred hhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccch
Confidence 777888889999999999888 4455 44444444555667788899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 003937 634 DAANIRKSMKYVG 646 (785)
Q Consensus 634 ~a~~~~~~m~~~g 646 (785)
.|..-|.-|.+..
T Consensus 609 ~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 609 LALLHFSWALDLD 621 (638)
T ss_pred HHHHhhHHHhcCC
Confidence 9988888776643
No 47
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.37 E-value=4.4e-07 Score=94.14 Aligned_cols=286 Identities=15% Similarity=0.178 Sum_probs=152.4
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhhcCCC-----CChhhHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHh
Q 003937 48 VFLKNSLMNFYAKTESISYAKKVFDEMPV-----KTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNE 122 (785)
Q Consensus 48 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 122 (785)
+.+|-..++.+.+.|++...+..|+.... .....|...|......|-++-+.+++++-.+-++..-+--|..+++
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~ 181 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAK 181 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 45666667777777777777777776432 2334677777777777777777777777666555556667777777
Q ss_pred CCChhHHHHHHHHhHHCC------CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCC--CCC--hhHHHHHHHHHHh
Q 003937 123 IGRFKNAIRMFVEMVQDQ------VLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGL--SGC--VNVTNSLLNMYAK 192 (785)
Q Consensus 123 ~g~~~~a~~~~~~m~~~g------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~~~~ 192 (785)
.++.++|.+.+...+... .+.+...|.-+-...++.-+.-....+ +.+++.|+ -+| ...|++|.+-|.+
T Consensus 182 ~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnv-daiiR~gi~rftDq~g~Lw~SLAdYYIr 260 (835)
T KOG2047|consen 182 SDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNV-DAIIRGGIRRFTDQLGFLWCSLADYYIR 260 (835)
T ss_pred ccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCH-HHHHHhhcccCcHHHHHHHHHHHHHHHH
Confidence 777777777776655321 122333444444444443333222222 22223332 222 3567777788888
Q ss_pred CCChHHHHHHHhcCCCC--CcchHHHHHHHHHhc----------------------CChHHHHHHhhhcCCC--------
Q 003937 193 VGDEMMAKAVFDGMRLK--NVSSWNVVVSLHIHS----------------------GRLDLARAQFDQMIER-------- 240 (785)
Q Consensus 193 ~g~~~~A~~~~~~m~~~--~~~~~~~li~~~~~~----------------------g~~~~A~~l~~~~~~~-------- 240 (785)
.|.++.|+.+|++.... .+.-++.+-+.|++- -+++-.+.-|+.+..+
T Consensus 261 ~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsV 340 (835)
T KOG2047|consen 261 SGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSV 340 (835)
T ss_pred hhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHH
Confidence 88888888777765422 222233333333322 1122233333333222
Q ss_pred -------CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCCh------hhHHHHHHHHhcccchhhHHHHHHHHHHh
Q 003937 241 -------DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDK------FTLASTLSACANLEKLKLGKQIHAYIIRT 307 (785)
Q Consensus 241 -------~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 307 (785)
++..|..-+. +..|+..+-...|.+.++ .+.|.. ..|..+-+-+-+.|+++.|+.+|+...+.
T Consensus 341 lLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 341 LLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 2223322222 334556666666666632 222321 12344444455566666666666666655
Q ss_pred cCCCC---cchHHHHHHHHHhcCChHHHHHHHHH
Q 003937 308 EFDAT---GPVGNALISCYAKVGGVEIAQKIVEQ 338 (785)
Q Consensus 308 g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~ 338 (785)
.++.- ..+|..-..+-.+..+++.|.++++.
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~ 450 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR 450 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 44332 23444445555555566666666655
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.2e-09 Score=104.76 Aligned_cols=249 Identities=14% Similarity=0.108 Sum_probs=119.6
Q ss_pred HHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC----chHhHHHHHHHHHhcCC
Q 003937 286 SACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL----NVIAFTTLLDGYIKIGD 361 (785)
Q Consensus 286 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~ 361 (785)
.++......+.+.+-.......|++.....-+....++-...++++|+.+|+++...+| |..+|+.++-.--....
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk 314 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK 314 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH
Confidence 34444556666666666777777777666666666666677766777766666655555 44444444332221111
Q ss_pred HH-HHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHH
Q 003937 362 IG-PARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALR 440 (785)
Q Consensus 362 ~~-~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 440 (785)
+. -|..++.- -+--..|...+.+-++-.++.++|...|+.+++
T Consensus 315 Ls~LA~~v~~i------------------------------------dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk 358 (559)
T KOG1155|consen 315 LSYLAQNVSNI------------------------------------DKYRPETCCIIANYYSLRSEHEKAVMYFKRALK 358 (559)
T ss_pred HHHHHHHHHHh------------------------------------ccCCccceeeehhHHHHHHhHHHHHHHHHHHHh
Confidence 11 11111110 111112332222333333333333333333332
Q ss_pred hCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHH
Q 003937 441 SGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITY 517 (785)
Q Consensus 441 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~ 517 (785)
.+ +.....|+.+.+-|....+...|.+-++.... +.|-..|-.|..+|..-+.+.=|+-.|++..+ ++|+. ..|
T Consensus 359 LN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw 435 (559)
T KOG1155|consen 359 LN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLW 435 (559)
T ss_pred cC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHH
Confidence 21 11122334444445555555555555554321 12555555566666655555556666655555 44433 355
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHh
Q 003937 518 VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIEN 575 (785)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 575 (785)
.+|..+|.+.++.++|+..|..... .-..+...+..|.++|-+.++.++|...|++
T Consensus 436 ~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 436 VALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5555555555666666655555543 1122334455555555555555555544443
No 49
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.34 E-value=9.3e-07 Score=91.86 Aligned_cols=182 Identities=16% Similarity=0.257 Sum_probs=130.0
Q ss_pred hHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHhhCCC-----CCccHHHHHHHHHHhCCChhHHHHHHHHhHHC
Q 003937 65 SYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPN-----RDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQD 139 (785)
Q Consensus 65 ~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 139 (785)
+.+.....+|| ..|-..+..+.++|++...++.|+.... .....|...+.-..+.|-++-++.++++.++
T Consensus 92 er~lv~mHkmp----RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk- 166 (835)
T KOG2047|consen 92 ERCLVFMHKMP----RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK- 166 (835)
T ss_pred HHHHHHHhcCC----HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh-
Confidence 33444444444 4788899999999999999999987542 3445699999999999999999999999886
Q ss_pred CCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhC------CCCChhHHHHHHHHHHhCCCh---HHHHHHHhcCCCC-
Q 003937 140 QVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTG------LSGCVNVTNSLLNMYAKVGDE---MMAKAVFDGMRLK- 209 (785)
Q Consensus 140 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~- 209 (785)
+.|.. -.--+.-+...+++++|.+.+..++... .+.+-..|..+.+..++.-+. -....+++.+..+
T Consensus 167 -~~P~~--~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rf 243 (835)
T KOG2047|consen 167 -VAPEA--REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRF 243 (835)
T ss_pred -cCHHH--HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccC
Confidence 34433 4455677788899999999888776331 256667777777777765432 2344555555433
Q ss_pred -C--cchHHHHHHHHHhcCChHHHHHHhhhcCCC--CcccHHHHHHHHhh
Q 003937 210 -N--VSSWNVVVSLHIHSGRLDLARAQFDQMIER--DVVTWNSMIAGYSQ 254 (785)
Q Consensus 210 -~--~~~~~~li~~~~~~g~~~~A~~l~~~~~~~--~~~~~~~li~~~~~ 254 (785)
| ...|++|.+-|.+.|.++.|.++|++.+.. .+.-++.+-.+|++
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~ 293 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQ 293 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHH
Confidence 2 457999999999999999999999987553 33345555555543
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=6.3e-09 Score=103.52 Aligned_cols=328 Identities=12% Similarity=0.098 Sum_probs=235.2
Q ss_pred cCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHH-HHHHH
Q 003937 308 EFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAW-TAMLV 385 (785)
Q Consensus 308 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~-~~li~ 385 (785)
+...|....-...-.+.+.|....|+..|.+.....| .-.+|..|..... +.+.+..+-...+..+...- --+..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit---~~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELIT---DIEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhc---hHHHHHHHHhcCcccchHHHHHHHHH
Confidence 3345555555555566778888889888888666654 4445555444332 44444444333333221111 12344
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhcCCH
Q 003937 386 GYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGE--ASSLSVSNALITMYSKAGNI 463 (785)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~ 463 (785)
+|....+.++++.-.......|+.-+...-+....+.-...++++|..+|+.+.+... -.|..+|+.++-.-..+.++
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 5666668888888888888777654444444444445677899999999999998832 12566666655332222222
Q ss_pred -HHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 464 -NAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 464 -~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
--|..+++-=+-+ +.|...+.+-|.-.++.++|+..|++.++ +.|... .|+.+..-|....+...|.+-++...
T Consensus 316 s~LA~~v~~idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHHhccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 2233444333333 44566677788889999999999999998 677764 67777788999999999999999887
Q ss_pred hcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 003937 542 NVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAY 619 (785)
Q Consensus 542 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 619 (785)
+ -.+.|-..|-.|..+|.-.+...-|+-+|++. .++| |...|.+|...|.+.++.++|+..|.+++...-.+...+
T Consensus 392 d--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l 469 (559)
T KOG1155|consen 392 D--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSAL 469 (559)
T ss_pred h--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHH
Confidence 5 23456778889999999999999999999998 6777 688999999999999999999999999999876688899
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 620 SALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 620 ~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+.|+++|-+.++.++|...+++-.+
T Consensus 470 ~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 470 VRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999988754
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.32 E-value=7.8e-12 Score=126.80 Aligned_cols=224 Identities=13% Similarity=0.177 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003937 379 AWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYS 458 (785)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 458 (785)
.|..+.......++.++|...++++...+.. +...+..++.. ...+++++|..+.....+.. ++...+..++..|.
T Consensus 46 ~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~ 121 (280)
T PF13429_consen 46 YWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYY 121 (280)
T ss_dssp ----------------------------------------------------------------------------H-HH
T ss_pred ccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHH
Confidence 3333333344445555555555555443221 22223333333 34555555555544433322 33444556667777
Q ss_pred hcCCHHHHHHHHHhccc----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHH
Q 003937 459 KAGNINAARRVFNLIHW----RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 459 ~~g~~~~A~~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 533 (785)
+.|+++++.++++.+.. +++...|..+...+.+.|+.++|++.+++..+ ..|+ ......++..+...|+.+++
T Consensus 122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~ 199 (280)
T PF13429_consen 122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEA 199 (280)
T ss_dssp HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHH
Confidence 78888888888877542 23666788888888888888899999988888 5676 45677788888888888888
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
.++++...+. .+.+...+..+..+|...|+.++|+.++++. ...| |+.+...+..++...|+.++|..+.+++.+
T Consensus 200 ~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 200 REALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888877762 2556667788888888889999999888887 3345 566777888888888999988888887754
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.31 E-value=3e-09 Score=113.67 Aligned_cols=280 Identities=11% Similarity=0.038 Sum_probs=200.3
Q ss_pred HhcCCHHHHHHHHHhcCC--CC-HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHh--hHHHHHHHHhccCchHHH
Q 003937 357 IKIGDIGPARRIFDSLRD--RD-VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNY--TLSAMLSVSSSLASLDHG 431 (785)
Q Consensus 357 ~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a 431 (785)
...|+++.|.+.+....+ ++ ...+-.....+.+.|+++.|.+.+.+..+.. |+.. .-..........|+.+.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 456799999999988765 33 2333444566778899999999999987643 5443 333346667789999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHH----HHHHHHHcCChHHHHHHHHHH
Q 003937 432 KQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTS----MIVALAQHGLGEEAIQLFERM 505 (785)
Q Consensus 432 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~----li~~~~~~g~~~~A~~~~~~m 505 (785)
...+..+.+.. +.+..+...+...|...|++++|.+.+..+... ++...+.. ...++...+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999998886 456678889999999999999999999988643 23332321 112223334444445566666
Q ss_pred HHCCC---CCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhH-HHHHHHH--hhcCCHHHHHHHHHhC-CC
Q 003937 506 LELGI---KPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHF-ASMVDLL--GRAGLLQEAYNFIENM-PL 578 (785)
Q Consensus 506 ~~~g~---~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~--~~~g~~~~A~~~~~~~-~~ 578 (785)
.+... +.+...+..+...+...|+.++|.+.+++..+. .|+.... -.++..+ ...++.+.+.+.+++. ..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 65321 126677888888999999999999999988762 3443311 0122322 3347778888888776 34
Q ss_pred CCCH---HHHHHHHHHHHhcCCHHHHHHHHH--HHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 579 EPDV---VAWGSLLSACRVHKNLDLGKIAAE--KLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 579 ~p~~---~~~~~ll~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
.|+. ....++...|.+.|++++|.+.++ ...+..| ++..+..++.++.+.|+.++|.+++++-.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5543 556788888999999999999999 5777888 55567799999999999999999998754
No 53
>PF13041 PPR_2: PPR repeat family
Probab=99.29 E-value=8.6e-12 Score=88.15 Aligned_cols=50 Identities=32% Similarity=0.541 Sum_probs=48.3
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 003937 477 QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTH 526 (785)
Q Consensus 477 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 526 (785)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999875
No 54
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.25 E-value=2e-09 Score=106.15 Aligned_cols=199 Identities=12% Similarity=0.083 Sum_probs=164.8
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhccc-CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003937 445 SSLSVSNALITMYSKAGNINAARRVFNLIHW-RQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLT 522 (785)
Q Consensus 445 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 522 (785)
.....+..+...|...|++++|.+.|++... .| +...|..+...|...|++++|.+.+++..+.. +.+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 3456677788899999999999999987642 23 56778888899999999999999999998853 334457777888
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 600 (785)
.+...|++++|...++...+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 899999999999999998763222233556777888999999999999999887 3445 46678888888999999999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
|...++++.+..|.++..+..++.++...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999888888888999999999999999999888764
No 55
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=4.2e-08 Score=100.40 Aligned_cols=496 Identities=13% Similarity=0.058 Sum_probs=236.6
Q ss_pred CChHHHHHHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhc--CCCCChhhHHHHHHH
Q 003937 11 SPLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDE--MPVKTLCSWNTILSA 88 (785)
Q Consensus 11 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~li~~ 88 (785)
.+..-+..+++-+..+.++..|.-+=+.+...+ .++.-.--+.++|.-.|.+..|..+... +.+.|..+.......
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~ 91 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKC 91 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 355667778887777888888877777766555 4444444577777777777777666543 334566666666666
Q ss_pred HHccCChhHHHHHHhhCCC-CCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHH
Q 003937 89 YAKQGRLDLACEVFNLMPN-RDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKV 167 (785)
Q Consensus 89 ~~~~g~~~~A~~~f~~m~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 167 (785)
+.+..+++.|..++..-+. .++.+|..-=. ...-....+. ++.. +...+..+-.=-+.+......++|+..
T Consensus 92 l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ar~~ 163 (611)
T KOG1173|consen 92 LVKLKEWDQALLVLGRGHVETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEARDK 163 (611)
T ss_pred HHHHHHHHHHHHHhcccchhhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHHHHH
Confidence 6666677777666653321 11111111000 0000000011 0000 000000010011223344455666666
Q ss_pred HHHHHHhCCCCChhHHHHHHHHHHhC-CChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHH
Q 003937 168 HSFVVKTGLSGCVNVTNSLLNMYAKV-GDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWN 246 (785)
Q Consensus 168 ~~~~~~~g~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~ 246 (785)
+...+.. |+..+.++...-... -...+-..+|+.++-. . ....+.+.-+.+|+....++.
T Consensus 164 Y~~Al~~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a---~--------~~~ed~e~l~~lyel~~~k~~---- 224 (611)
T KOG1173|consen 164 YKEALLA----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLA---M--------LTKEDVERLEILYELKLCKNR---- 224 (611)
T ss_pred HHHHHhc----chhhHHHHHHHHHHHhcchhHHHHHHhcccHH---h--------hhhhHHHHHHHHHHhhhhhhc----
Confidence 6555443 233333322221111 0111223333332200 0 000011111111110000000
Q ss_pred HHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 003937 247 SMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKV 326 (785)
Q Consensus 247 ~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 326 (785)
-++....-.+- ...+..-+......-..-|....++....++.+.+.+.. ++....+..-|..+...
T Consensus 225 -----------n~~~~~r~~~~-sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el 291 (611)
T KOG1173|consen 225 -----------NEESLTRNEDE-SLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYEL 291 (611)
T ss_pred -----------cccccccCchh-hhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHh
Confidence 00000000000 001112222222222333334455555555555554443 33333444444556666
Q ss_pred CChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHHcCChhHHHHHHHH
Q 003937 327 GGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRD---VVAWTAMLVGYEQNGLNKDAVELFRS 402 (785)
Q Consensus 327 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~ 402 (785)
|+..+-..+=.++.+..| ...+|.++.-.|.-.|...+|++.|.....-| ...|-.....|+-.|..++|+..+..
T Consensus 292 ~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~t 371 (611)
T KOG1173|consen 292 GKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFT 371 (611)
T ss_pred cccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHH
Confidence 665555555555666655 56777777777777788888888887655422 35677777778888888888877766
Q ss_pred HHHcCCCCCHh-hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-----
Q 003937 403 MVREGPKPNNY-TLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR----- 476 (785)
Q Consensus 403 m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----- 476 (785)
.-+. .|... -+-.+---|.+.++++.|.+.+.++... .+.|+.+.+-+.-+....+.+.+|..+|+....+
T Consensus 372 Aarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~ 448 (611)
T KOG1173|consen 372 AARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVL 448 (611)
T ss_pred HHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcc
Confidence 5442 11111 1112222355566666777666665543 2445566666666666666666666666544210
Q ss_pred ---C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCch
Q 003937 477 ---Q-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPS 551 (785)
Q Consensus 477 ---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~ 551 (785)
+ -..+|+.|..+|.+.+++++|+..|++.+. ..| |..|+.++.-.+...|+++.|...|.+.. .+.|+-.
T Consensus 449 ~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l~p~n~ 523 (611)
T KOG1173|consen 449 NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL---ALKPDNI 523 (611)
T ss_pred ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hcCCccH
Confidence 0 122355555556666666666666666555 233 33455555555555556666555555443 3445544
Q ss_pred hHHHH
Q 003937 552 HFASM 556 (785)
Q Consensus 552 ~~~~l 556 (785)
+-..+
T Consensus 524 ~~~~l 528 (611)
T KOG1173|consen 524 FISEL 528 (611)
T ss_pred HHHHH
Confidence 33333
No 56
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=1.7e-06 Score=94.06 Aligned_cols=585 Identities=13% Similarity=0.151 Sum_probs=330.3
Q ss_pred HHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC--CChhhHHHHHHHHHccCChh
Q 003937 19 LLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV--KTLCSWNTILSAYAKQGRLD 96 (785)
Q Consensus 19 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~ 96 (785)
++..++..|.++.+.-. ..+-|..|| |-.+++...+ -+++.+.++...|++ +...-.+.+...+...+...
T Consensus 487 Vi~cfAE~Gqf~KiilY---~kKvGyTPd---ymflLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~DlFme~N~iQ 559 (1666)
T KOG0985|consen 487 VIQCFAETGQFKKIILY---AKKVGYTPD---YMFLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVDLFMELNLIQ 559 (1666)
T ss_pred HHHHHHHhcchhHHHHH---HHHcCCCcc---HHHHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHHHHHHHHhhh
Confidence 66777777777665543 345677777 3344555444 566777766666654 22222333333333222222
Q ss_pred HHHH-------------------HHhhCC--CC---------C---ccHHHHHHHHHHhCCChhHHHHHHHHhHHC---C
Q 003937 97 LACE-------------------VFNLMP--NR---------D---SVSWTTIIVTYNEIGRFKNAIRMFVEMVQD---Q 140 (785)
Q Consensus 97 ~A~~-------------------~f~~m~--~~---------~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g 140 (785)
.+.. +++... .| + ..-|..+.+.|.++|-...|++.|.+...- -
T Consensus 560 q~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~v 639 (1666)
T KOG0985|consen 560 QCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVV 639 (1666)
T ss_pred hhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHH
Confidence 2211 111110 11 1 122778888889999999999887765420 0
Q ss_pred CCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCC-------------
Q 003937 141 VLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMR------------- 207 (785)
Q Consensus 141 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~------------- 207 (785)
+..+...---++. +-..-.++.+.+.+..|+..++..+..+.-.+..-|...=-.+.-.++|+...
T Consensus 640 Vhth~L~pEwLv~-yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSiv 718 (1666)
T KOG0985|consen 640 VHTHLLNPEWLVN-YFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIV 718 (1666)
T ss_pred HHhccCCHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHh
Confidence 0000000111122 22233567777777888877777766665555555555544555566665554
Q ss_pred --CCCcchHHHHHHHHHhcCChHHHHHHhhhcCC-------------------C------------CcccH------HHH
Q 003937 208 --LKNVSSWNVVVSLHIHSGRLDLARAQFDQMIE-------------------R------------DVVTW------NSM 248 (785)
Q Consensus 208 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-------------------~------------~~~~~------~~l 248 (785)
..|....-..|.+.|+.|++.+.+++.++-.- | |.+.| -..
T Consensus 719 n~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~ky 798 (1666)
T KOG0985|consen 719 NFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKY 798 (1666)
T ss_pred ccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHH
Confidence 23555666778888888888888887655410 1 11111 112
Q ss_pred HHHHhhCCCchHHHHHHHHhh--------------hcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcc
Q 003937 249 IAGYSQNGYDFEALGMFANML--------------KDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGP 314 (785)
Q Consensus 249 i~~~~~~g~~~~A~~l~~~ml--------------~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~ 314 (785)
|..|.+.-++.+.-.+...++ .-.|..| ..-+..-+-+.+++..-...++..+..| ..|..
T Consensus 799 IE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~----~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a 873 (1666)
T KOG0985|consen 799 IEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFP----VDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPA 873 (1666)
T ss_pred HHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCC----hHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchH
Confidence 333333322222111111110 0011111 1123334445566666666777777777 45788
Q ss_pred hHHHHHHHHHhcCChHHHH----HHHH-----H-hCCCCC---------------------chHhHHHHHHHHHhcCCHH
Q 003937 315 VGNALISCYAKVGGVEIAQ----KIVE-----Q-SGISYL---------------------NVIAFTTLLDGYIKIGDIG 363 (785)
Q Consensus 315 ~~~~li~~y~~~g~~~~A~----~~~~-----~-~~~~~~---------------------~~~~~~~li~~~~~~g~~~ 363 (785)
++|+|...|..+++-.+-. ..++ + ...++| ....|....+.+.+..+.+
T Consensus 874 ~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~ 953 (1666)
T KOG0985|consen 874 THNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPD 953 (1666)
T ss_pred HHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChH
Confidence 9999999888776544321 0011 1 122222 1123444455555555554
Q ss_pred HHHHHHH-----------hcC-----C-CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CCHhhHHHHHHHHhcc
Q 003937 364 PARRIFD-----------SLR-----D-RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPK-PNNYTLSAMLSVSSSL 425 (785)
Q Consensus 364 ~A~~~f~-----------~~~-----~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~ 425 (785)
-=.+++. ++. + .|+..-+.-+.++...+-+.+-++++++..-..-. .....+..++---+-.
T Consensus 954 LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik 1033 (1666)
T KOG0985|consen 954 LWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK 1033 (1666)
T ss_pred HHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh
Confidence 4333332 111 1 35555667788899999999999999988643211 1111111111111111
Q ss_pred CchHHHHHHHHHHHHh-----------------------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHH
Q 003937 426 ASLDHGKQIHASALRS-----------------------GEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSW 482 (785)
Q Consensus 426 ~~~~~a~~~~~~~~~~-----------------------g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~ 482 (785)
.+.....+....+-.. .+..+....+.||+ .-+.++.|.+.-++.. .+..|
T Consensus 1034 ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n---~p~vW 1107 (1666)
T KOG0985|consen 1034 ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCN---EPAVW 1107 (1666)
T ss_pred cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhC---ChHHH
Confidence 1112222222111111 11222222222222 2234444444444332 45679
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhh
Q 003937 483 TSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGR 562 (785)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 562 (785)
..+..+-.+.|...+|++-|-+ .-|+..|..++.++++.|.|++-.+++....+ ..-+|.+. +.||-+|++
T Consensus 1108 sqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id--~eLi~AyAk 1178 (1666)
T KOG0985|consen 1108 SQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID--SELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--HHHHHHHHH
Confidence 9999999999999999987733 23456899999999999999999999987765 55667665 679999999
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 563 AGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 563 ~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
.+++.|-++++. -||..-.....+-|...|.++.|+-++. +...|.-|+..+...|.+..|...-++.
T Consensus 1179 t~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1179 TNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred hchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 999999888874 3787778888899999999999988887 4456778888888889888887765555
Q ss_pred H
Q 003937 643 K 643 (785)
Q Consensus 643 ~ 643 (785)
.
T Consensus 1247 n 1247 (1666)
T KOG0985|consen 1247 N 1247 (1666)
T ss_pred c
Confidence 3
No 57
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.4e-07 Score=94.71 Aligned_cols=219 Identities=15% Similarity=0.079 Sum_probs=162.8
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHH
Q 003937 387 YEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAA 466 (785)
Q Consensus 387 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 466 (785)
+.-.|+...|...|+..+.....++.. |.-+-..+....+.++..+.|..+.+.. +.++.+|.--..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 445678888888888888765444442 6666667888888888888888887764 33455666667777778899999
Q ss_pred HHHHHhccc-CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhc
Q 003937 467 RRVFNLIHW-RQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNV 543 (785)
Q Consensus 467 ~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 543 (785)
..=|++... .| ++..|-.+-.+.-+.+++++++..|++.++. -|+. ..|+.....+...++++.|.+.|+..++
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh-
Confidence 999987653 22 5667777777777788999999999999884 4554 5888888899999999999999998875
Q ss_pred CCCCCC---------chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 003937 544 HKIKPT---------PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIE 612 (785)
Q Consensus 544 ~~~~p~---------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 612 (785)
+.|+ +.+.-+++- +.-.+++.+|.+++.+. .+.|. ...+-+|...-.+.|++++|+++|++...+-
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred --hccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333 111122222 12338999999999988 67774 5688888888899999999999999987754
Q ss_pred C
Q 003937 613 P 613 (785)
Q Consensus 613 p 613 (785)
.
T Consensus 568 r 568 (606)
T KOG0547|consen 568 R 568 (606)
T ss_pred H
Confidence 3
No 58
>PF13041 PPR_2: PPR repeat family
Probab=99.22 E-value=3e-11 Score=85.32 Aligned_cols=50 Identities=30% Similarity=0.624 Sum_probs=47.9
Q ss_pred CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 003937 375 RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSS 424 (785)
Q Consensus 375 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 424 (785)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 59
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.22 E-value=2.6e-07 Score=98.11 Aligned_cols=493 Identities=13% Similarity=0.094 Sum_probs=285.2
Q ss_pred hCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHH---hccCChhHHHHHHHHHHHhCCCCC-----hhHHHHHHHHHHhC
Q 003937 122 EIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASC---TALGDLSAGKKVHSFVVKTGLSGC-----VNVTNSLLNMYAKV 193 (785)
Q Consensus 122 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~---~~~g~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~~~~~ 193 (785)
..+.++.++.-+..-...+...+..++..+...+ ...++.+++ ++-..+..-+.|. +.++-.++--+.+.
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~r~ 316 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKLRL 316 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence 3466677777777777777777777776665543 344555555 3333333333332 22222222223333
Q ss_pred CChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCC---CCcccHHHHHHHHhhCCCchHHHHHHHHhhh
Q 003937 194 GDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIE---RDVVTWNSMIAGYSQNGYDFEALGMFANMLK 270 (785)
Q Consensus 194 g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~ 270 (785)
+++. .|...|..+.-++.+.|+++.+.+.|++... .....|+.+-..|...|....|+.++++-+.
T Consensus 317 ~~~q-----------nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~ 385 (799)
T KOG4162|consen 317 KKFQ-----------NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLK 385 (799)
T ss_pred hhhc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 3332 3445566677788888999999999988744 2456799999999999999999999987733
Q ss_pred cCCCCCChhhHHHHHHHHh-cccchhhHHHHHHHHHHh--cC--CCCcchHHHHHHHHHhc----C-------ChHHHHH
Q 003937 271 DSSLKPDKFTLASTLSACA-NLEKLKLGKQIHAYIIRT--EF--DATGPVGNALISCYAKV----G-------GVEIAQK 334 (785)
Q Consensus 271 ~~g~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~li~~y~~~----g-------~~~~A~~ 334 (785)
...-.+|...+...-..|. +.+..+.+..+-..++.. +. ......+-.+.-+|... . ...++.+
T Consensus 386 ~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslq 465 (799)
T KOG4162|consen 386 KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQ 465 (799)
T ss_pred cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHH
Confidence 3332333344444444454 456667776666666652 11 11222233333333221 1 2334566
Q ss_pred HHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcC----CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 003937 335 IVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLR----DRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPK 409 (785)
Q Consensus 335 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 409 (785)
.+++....+| |..+...+.--|...++++.|.....+.. ..+...|..+.-.+...+++.+|+.+.+..... .
T Consensus 466 ale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~ 543 (799)
T KOG4162|consen 466 ALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--F 543 (799)
T ss_pred HHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--h
Confidence 6676544443 34444444445666667777777666543 346778888877788888888888887765543 1
Q ss_pred CCHh-hHHHHHHHHhccCchHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc---C-CChh-HH
Q 003937 410 PNNY-TLSAMLSVSSSLASLDHGKQIHASALRSG-EASSLSVSNALITMYSKAGNINAARRVFNLIHW---R-QETV-SW 482 (785)
Q Consensus 410 p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~-p~~~-~~ 482 (785)
|+.. ....-+..-...++.+++......+...- -.+ .....|+-....+.+..+.. . .|.+ ++
T Consensus 544 ~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~----------~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~s 613 (799)
T KOG4162|consen 544 GDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEY----------GVQQTLDEGKLLRLKAGLHLALSQPTDAISTS 613 (799)
T ss_pred hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhh----------hHhhhhhhhhhhhhhcccccCcccccccchhh
Confidence 2211 11111111112344444433333222210 000 00111222233334433321 1 1222 22
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--------HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHH
Q 003937 483 TSMIVALAQHGLGEEAIQLFERMLELGIKPDHI--------TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFA 554 (785)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 554 (785)
..+. +... -+...+..-.. |...-+.|+.. .|......+...+..++|...+.+..+ -..-....|.
T Consensus 614 r~ls-~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~ 688 (799)
T KOG4162|consen 614 RYLS-SLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYY 688 (799)
T ss_pred HHHH-HHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHH
Confidence 2222 2221 11111110000 22222233221 244455577888899999988887764 2233355566
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhhCCCCchhHHHHHHHHHhcC
Q 003937 555 SMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKI--AAEKLLLIEPDNSGAYSALCNLYSSCG 630 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g 630 (785)
-....+...|.++||.+.|... -++|+ +.+..++...+.+.|+...|.. ++..+++++|.++..|..|+.++-+.|
T Consensus 689 ~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G 768 (799)
T KOG4162|consen 689 LRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG 768 (799)
T ss_pred HhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence 6667888899999999988776 67886 6688899999999999888888 999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHh
Q 003937 631 KWEDAANIRKSMKY 644 (785)
Q Consensus 631 ~~~~a~~~~~~m~~ 644 (785)
+.++|.+.|+...+
T Consensus 769 d~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 769 DSKQAAECFQAALQ 782 (799)
T ss_pred chHHHHHHHHHHHh
Confidence 99999999998764
No 60
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.4e-07 Score=94.95 Aligned_cols=261 Identities=12% Similarity=0.090 Sum_probs=199.9
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003937 376 DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALIT 455 (785)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 455 (785)
++...-.-..-+...+++.+..+++....+. .++....+..=|.++...|+..+-..+=..+++. .|....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3344444455677788999999999988765 2344444555555666777766655555555554 4566778888888
Q ss_pred HHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHH
Q 003937 456 MYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQ 532 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~ 532 (785)
.|.-.|+..+|++.|.+...- .=...|-.....|+-.|..++|+..+...-+. -|.. --+.-+.--|.+.+..+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHH
Confidence 888889999999999876533 13467999999999999999999998887763 3322 233334446888999999
Q ss_pred HHHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCCHHHHHHHHHhCC-----C---CC-CHHHHHHHHHHHHhcCCHHHHH
Q 003937 533 GQRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGLLQEAYNFIENMP-----L---EP-DVVAWGSLLSACRVHKNLDLGK 602 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----~---~p-~~~~~~~ll~~~~~~g~~~~a~ 602 (785)
|.++|.+... +-| |+...+-+.-+....+.+.+|..+|+..- . .+ -..+|+.|..+|++.+..++|+
T Consensus 399 Ae~Ff~~A~a---i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 399 AEKFFKQALA---IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHh---cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999998863 444 46666777667778889999999988761 1 12 2456889999999999999999
Q ss_pred HHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 603 IAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 603 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
..+++++.+.|.+..+|.+++-+|...|+++.|...|.+..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999875
No 61
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.16 E-value=1.7e-08 Score=106.62 Aligned_cols=230 Identities=19% Similarity=0.225 Sum_probs=160.5
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHHh-----CC-CCch-HHHHHHHHHHHhcCCHHHHHHHHHhcc---------cCC
Q 003937 414 TLSAMLSVSSSLASLDHGKQIHASALRS-----GE-ASSL-SVSNALITMYSKAGNINAARRVFNLIH---------WRQ 477 (785)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~~~g~~~~A~~~~~~~~---------~~p 477 (785)
|...+...|...|+++.|..+++..++. |. .|.+ ...+.+...|...+++++|..+|+++- ..|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333444555555555555555554443 11 1222 222346678888888888888887652 112
Q ss_pred C-hhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHH--HHHHHHHHhhccCCHHHHHHHHHHhhhcCC--CC
Q 003937 478 E-TVSWTSMIVALAQHGLGEEAIQLFERMLE-----LGIKPDHI--TYVGVLTACTHGGLVEQGQRYYNMMKNVHK--IK 547 (785)
Q Consensus 478 ~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~ 547 (785)
. ..+++.|...|.+.|++++|...+++..+ .|..+..+ -++.+...|...+.+++|..++....+.+. ..
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2 24577788889999998888877776543 23333332 466677788999999999998887654332 22
Q ss_pred CC----chhHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--
Q 003937 548 PT----PSHFASMVDLLGRAGLLQEAYNFIENM---------PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLI-- 611 (785)
Q Consensus 548 p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-- 611 (785)
++ ..+++.|...|.+.|++++|++++++. +..+. ...++.|...|.+.++.+.|.++|++...+
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 457899999999999999999999887 11232 456788888999999999999999988763
Q ss_pred --CCCC---chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 612 --EPDN---SGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 612 --~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
.|++ ..+|..|+..|...|++++|.++.+...
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4444 4578899999999999999999988875
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.14 E-value=9.7e-08 Score=93.95 Aligned_cols=287 Identities=15% Similarity=0.087 Sum_probs=166.8
Q ss_pred CCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHH
Q 003937 255 NGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQK 334 (785)
Q Consensus 255 ~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 334 (785)
.|++.+|.++..+- .+.+-.|- ..|.....+....|+.+.+-..+..+.+..-.++..+
T Consensus 97 eG~~~qAEkl~~rn-ae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v------------------- 155 (400)
T COG3071 97 EGDFQQAEKLLRRN-AEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAV------------------- 155 (400)
T ss_pred cCcHHHHHHHHHHh-hhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHH-------------------
Confidence 46777777777665 55444442 2233333444444444444444444444322333333
Q ss_pred HHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 003937 335 IVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLR---DRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPN 411 (785)
Q Consensus 335 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 411 (785)
.-+........|+.+.|+.-.++.. .+++.........|.+.|++.....++..|.+.|.--|
T Consensus 156 --------------~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~ 221 (400)
T COG3071 156 --------------ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSD 221 (400)
T ss_pred --------------HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCCh
Confidence 3444444444446666665555443 35677778888888888999999998888888876544
Q ss_pred HhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHH
Q 003937 412 NYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVAL 489 (785)
Q Consensus 412 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~ 489 (785)
+..- .+ ...+++.+++-....+..+.-...++..+. +.++..-.+++.-+
T Consensus 222 ~e~~-----------------~l-----------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~l 273 (400)
T COG3071 222 EEAA-----------------RL-----------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERL 273 (400)
T ss_pred HHHH-----------------HH-----------HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHH
Confidence 3211 00 112223333333333333334445555542 22455556667777
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHH
Q 003937 490 AQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEA 569 (785)
Q Consensus 490 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 569 (785)
.+.|+.++|.++..+..+.+..|.-. .+-.+.+.++...-.+..+.-.+.++-.| ..+.+|...|.+.+.+.+|
T Consensus 274 i~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 274 IRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHH
Confidence 77888888888888877776666622 22245566666666665555554344434 5566666777777777777
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 570 YNFIENM-PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 570 ~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
.+.|+.. +..|+..+|+-+..++.+.|+.+.|.++.++.+.
T Consensus 348 ~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 348 SEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 7777655 5566777777777777777777777776666654
No 63
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=7.6e-07 Score=85.76 Aligned_cols=442 Identities=13% Similarity=0.052 Sum_probs=237.1
Q ss_pred hccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhh
Q 003937 156 TALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFD 235 (785)
Q Consensus 156 ~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 235 (785)
...+|+..|..+++.-...+-.....+.--+..+|.+.|++++|..++.-+...+
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~------------------------- 87 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD------------------------- 87 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-------------------------
Confidence 3344555555555444433322222222233455566677777776666554322
Q ss_pred hcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcch
Q 003937 236 QMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPV 315 (785)
Q Consensus 236 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 315 (785)
.++...|-.|.-.+.-.|.+.+|..+-.+. . .+...-..+++..-+.++-+.-..+|+.+...- .-
T Consensus 88 ---~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----Ed 153 (557)
T KOG3785|consen 88 ---DAPAELGVNLACCKFYLGQYIEAKSIAEKA-P-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----ED 153 (557)
T ss_pred ---CCCcccchhHHHHHHHHHHHHHHHHHHhhC-C-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HH
Confidence 234444444444444455555555544433 1 111122223333344454444444444433221 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHH-HHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHHcC
Q 003937 316 GNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTL-LDGYIKIGDIGPARRIFDSLRD--R-DVVAWTAMLVGYEQNG 391 (785)
Q Consensus 316 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g 391 (785)
.-+|.++....-.+++|++++.+.....|+....|.. .-+|.+..-++-+.++++--.+ | ++++-|.......+.=
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ 233 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLI 233 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhh
Confidence 2344444444556778888888877777766665554 3456666666666666654332 2 3444454444443332
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHH-H-HHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003937 392 LNKDAVELFRSMVREGPKPNNYTLSAML-S-VSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRV 469 (785)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 469 (785)
+...|..-.+++..++-.. +-+..-+ . -+.-..+-+.|.+++--+.+. -|... -.|+-.|.+.+++.+|..+
T Consensus 234 ngr~ae~E~k~ladN~~~~--~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPEAR--lNL~iYyL~q~dVqeA~~L 307 (557)
T KOG3785|consen 234 NGRTAEDEKKELADNIDQE--YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPEAR--LNLIIYYLNQNDVQEAISL 307 (557)
T ss_pred ccchhHHHHHHHHhccccc--chhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChHhh--hhheeeecccccHHHHHHH
Confidence 2233333334443332111 1111000 0 001112335555555444432 22222 2456678999999999999
Q ss_pred HHhcccCCChhHHHHHHHHHHHcCC-------hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 470 FNLIHWRQETVSWTSMIVALAQHGL-------GEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 470 ~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
.+.+... .+.-|-.-.-.++..|+ ..-|.+.|+-.-+++..-|.+ --.++.+++.-...+++...+++.+.
T Consensus 308 ~Kdl~Pt-tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~ 386 (557)
T KOG3785|consen 308 CKDLDPT-TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE 386 (557)
T ss_pred HhhcCCC-ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888533 22222222222333343 334555555544555554443 34455556666677899999999887
Q ss_pred hcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhhC-CCCc-
Q 003937 542 NVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMP-LE-PDVVAWGSLLSAC-RVHKNLDLGKIAAEKLLLIE-PDNS- 616 (785)
Q Consensus 542 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~-p~~~- 616 (785)
. +=...|...+| +..+++..|...+|+++|-+.. .+ .|..+|.+++.-| ...|..+.|..++- ..+ |.+.
T Consensus 387 s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~l---k~~t~~e~f 461 (557)
T KOG3785|consen 387 S-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMML---KTNTPSERF 461 (557)
T ss_pred H-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHH---hcCCchhHH
Confidence 6 54455555554 7789999999999999998873 12 3677888777765 56677787776543 333 3222
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 003937 617 GAYSALCNLYSSCGKWEDAANIRKSMKYVGVK 648 (785)
Q Consensus 617 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 648 (785)
.....+++-|.+++.+=-|.+.|+.+......
T Consensus 462 sLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 462 SLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 23445678899999999999999988765443
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.11 E-value=2.8e-07 Score=90.83 Aligned_cols=258 Identities=14% Similarity=0.062 Sum_probs=157.2
Q ss_pred HHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 003937 249 IAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGG 328 (785)
Q Consensus 249 i~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 328 (785)
+.+--+.|+.+.+-.++.+. .+..-.++...+.+.-......++.+.|+.-...+.+.+ +-+..+.......|.+.|+
T Consensus 125 A~AA~qrgd~~~an~yL~ea-ae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~ 202 (400)
T COG3071 125 AEAAQQRGDEDRANRYLAEA-AELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGA 202 (400)
T ss_pred HHHHHhcccHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhcc
Confidence 33444445555555555444 222112222223333333344444455544444444443 2233444555666666666
Q ss_pred hHHHHHHHHHhCCCCC---------chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHH
Q 003937 329 VEIAQKIVEQSGISYL---------NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDA 396 (785)
Q Consensus 329 ~~~A~~~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 396 (785)
+.....++.++.+... ...+|..+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|
T Consensus 203 ~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A 282 (400)
T COG3071 203 WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEA 282 (400)
T ss_pred HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHH
Confidence 6666666665544332 234666666666666666666667777764 3566666788888999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc-cc
Q 003937 397 VELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI-HW 475 (785)
Q Consensus 397 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-~~ 475 (785)
.++..+..+.+..|+..+ +-.+.+.++.+.-.+..+.-.+. .+.++..+.+|...|.+.+.+.+|...|+.. +.
T Consensus 283 ~~~i~~~Lk~~~D~~L~~----~~~~l~~~d~~~l~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~ 357 (400)
T COG3071 283 QEIIEDALKRQWDPRLCR----LIPRLRPGDPEPLIKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL 357 (400)
T ss_pred HHHHHHHHHhccChhHHH----HHhhcCCCCchHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 999999888877777322 23455666666655555554443 2333466778888888888888888888754 45
Q ss_pred CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 003937 476 RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD 513 (785)
Q Consensus 476 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 513 (785)
+|+..+|+-+..+|.+.|+..+|.+.+++.+..-.+|+
T Consensus 358 ~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 358 RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 67888888888888888888888888877664433343
No 65
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.7e-06 Score=87.87 Aligned_cols=182 Identities=14% Similarity=0.157 Sum_probs=121.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHH-HH-HHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhc
Q 003937 451 NALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIV-AL-AQHGLGEEAIQLFERMLELGIKPDH--ITYVGVLTACTH 526 (785)
Q Consensus 451 ~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~-~~-~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~ 526 (785)
+.|+.+|. +..+.+.++-...+..--...+.+++. ++ ++...+.+|.+++...-+. .|.. +.....+.....
T Consensus 313 ~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 313 NALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHh
Confidence 56666664 455677777766664412333444443 33 2333577888888877763 4544 345555666788
Q ss_pred cCCHHHHHHHHH--------HhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHH
Q 003937 527 GGLVEQGQRYYN--------MMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM--------PLEPD-VVAWGSLL 589 (785)
Q Consensus 527 ~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll 589 (785)
.|+++.|.+++. .+.+ .+. .+.+..+++.+|.+.+.-+-|..++.+. ...+. ..+|.-+.
T Consensus 389 ~gn~~~A~~il~~~~~~~~ss~~~-~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa 465 (652)
T KOG2376|consen 389 QGNPEVALEILSLFLESWKSSILE-AKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAA 465 (652)
T ss_pred cCCHHHHHHHHHHHhhhhhhhhhh-hcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHh
Confidence 999999999998 4443 333 3455677889999888777666666554 22222 22344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 003937 590 SACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRK 640 (785)
Q Consensus 590 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 640 (785)
..-.++|+.++|...++++.+..|+|..+...++.+|+.. +.+.|..+=+
T Consensus 466 ~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 466 EFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 4446789999999999999999999999999999999876 4566665533
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1.3e-07 Score=90.12 Aligned_cols=259 Identities=15% Similarity=0.176 Sum_probs=135.9
Q ss_pred CChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC-CCH------hHHHHHHHHHHHcCChhHHHH
Q 003937 327 GGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD-RDV------VAWTAMLVGYEQNGLNKDAVE 398 (785)
Q Consensus 327 g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~~------~~~~~li~~~~~~g~~~~A~~ 398 (785)
.+.++|.++|-+|...+| ...+-.+|.+.|-+.|..|.|+++-..+.+ ||. ...-.|..-|...|-+|.|..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 455566666655554444 344555566666666666666666655543 221 122233444555666666666
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc----hHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 003937 399 LFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASS----LSVSNALITMYSKAGNINAARRVFNLIH 474 (785)
Q Consensus 399 ~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~y~~~g~~~~A~~~~~~~~ 474 (785)
+|..+.+.|. .-......++..|....++++|..+-..+.+.+-.+. ...|..|...+....+++.|..++.+.-
T Consensus 129 ~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 129 IFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 6666554321 1122334444455555555555555444444432222 1233445555555666777777776553
Q ss_pred c-CCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCc
Q 003937 475 W-RQE-TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH--ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTP 550 (785)
Q Consensus 475 ~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 550 (785)
. .|+ +..=-.+...+...|+++.|++.++...+. .|+- .+...|..+|.+.|+.+++..++..+.+ ..+..
T Consensus 208 qa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~---~~~g~ 282 (389)
T COG2956 208 QADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME---TNTGA 282 (389)
T ss_pred hhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---ccCCc
Confidence 2 222 222233445567777777777777777774 3443 3566677777777777777777776654 12333
Q ss_pred hhHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHH
Q 003937 551 SHFASMVDLLGRAGLLQEAYNF-IENMPLEPDVVAWGSLLSA 591 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~ 591 (785)
..-..|.+......-.+.|... .++..-+|+...+..|+..
T Consensus 283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 283 DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 3334444444333334444433 3334456666655555543
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=2.3e-07 Score=88.51 Aligned_cols=237 Identities=18% Similarity=0.195 Sum_probs=148.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhCCCCC-----chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCH---hHHHHHHHHHHH
Q 003937 318 ALISCYAKVGGVEIAQKIVEQSGISYL-----NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDV---VAWTAMLVGYEQ 389 (785)
Q Consensus 318 ~li~~y~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~ 389 (785)
+|-+.|-+.|.+|.|+++-+.+..++. -..+...|..-|...|-+|.|+.+|..+.+... .....|+..|-+
T Consensus 74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~ 153 (389)
T COG2956 74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQA 153 (389)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHH
Confidence 344444445555555555444333321 123445566666667777777777777766333 344556777888
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHh----hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHH
Q 003937 390 NGLNKDAVELFRSMVREGPKPNNY----TLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINA 465 (785)
Q Consensus 390 ~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 465 (785)
..++++|+++-+++...+-.+..+ -|.-+........+++.|...+..+.+.. +..+..--.+.+.+...|+++.
T Consensus 154 treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~ 232 (389)
T COG2956 154 TREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQK 232 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHH
Confidence 888888888888777766555443 23344444555667778888887777654 2223333456778888999999
Q ss_pred HHHHHHhcccC-CCh--hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 466 ARRVFNLIHWR-QET--VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 466 A~~~~~~~~~~-p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
|.+.++.+... |+. .....|..+|.+.|+.++.+..+.++.+....++. -..+-..-....-.+.|..+..+-.+
T Consensus 233 AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 233 AVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 99999888655 332 24677888999999999999999998885333333 33333322333334555555544332
Q ss_pred cCCCCCCchhHHHHHHHH
Q 003937 543 VHKIKPTPSHFASMVDLL 560 (785)
Q Consensus 543 ~~~~~p~~~~~~~li~~~ 560 (785)
-.|+...+..+++.-
T Consensus 311 ---r~Pt~~gf~rl~~~~ 325 (389)
T COG2956 311 ---RKPTMRGFHRLMDYH 325 (389)
T ss_pred ---hCCcHHHHHHHHHhh
Confidence 268888888887754
No 68
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.09 E-value=5.3e-06 Score=87.28 Aligned_cols=528 Identities=16% Similarity=0.119 Sum_probs=310.4
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCCCChh-hHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHH
Q 003937 51 KNSLMNFYAKTESISYAKKVFDEMPVKTLC-SWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNA 129 (785)
Q Consensus 51 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a 129 (785)
....+.+|....+|++|..+-+....|... .-.+.+.++...|.-+.|-++ ...+.... +-|+.|.+.|.+..|
T Consensus 560 te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~el----k~sdgd~l-aaiqlyika~~p~~a 634 (1636)
T KOG3616|consen 560 TEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAEL----KESDGDGL-AAIQLYIKAGKPAKA 634 (1636)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhh----ccccCccH-HHHHHHHHcCCchHH
Confidence 345677888888888888887766555332 344566666667766666554 22233322 346778888887777
Q ss_pred HHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCC
Q 003937 130 IRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLK 209 (785)
Q Consensus 130 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 209 (785)
.+....=. .+..|......+..++.+..-++.|-.+|+.+... ...+..|-+-.-+.+|.++-+-.-..
T Consensus 635 ~~~a~n~~--~l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgdaf~kaielarfafp~ 703 (1636)
T KOG3616|consen 635 ARAALNDE--ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDAFGKAIELARFAFPE 703 (1636)
T ss_pred HHhhcCHH--HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccHHHHHHHHHHhhCcH
Confidence 66543211 12345555555555555555555565666554321 12233443433345555544322211
Q ss_pred Ccch-HHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHH
Q 003937 210 NVSS-WNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSAC 288 (785)
Q Consensus 210 ~~~~-~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~ 288 (785)
.+++ -...-..+.+.|+++.|..-|-+.. ..-..|.+-.....|.+|+.+++.+ +.... -..-|..+...|
T Consensus 704 evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~akew~kai~ildni-qdqk~--~s~yy~~iadhy 775 (1636)
T KOG3616|consen 704 EVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKEWKKAISILDNI-QDQKT--ASGYYGEIADHY 775 (1636)
T ss_pred HHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhhhhhhHhHHHHh-hhhcc--ccccchHHHHHh
Confidence 1111 1122334455667777666654431 1122345566778899999998887 54432 234467778888
Q ss_pred hcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHH
Q 003937 289 ANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRI 368 (785)
Q Consensus 289 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 368 (785)
++.|+++.|+++|... -.++--|+||.+.|++++|.++-++...+.-....|-+-..-+-+.|++.+|.++
T Consensus 776 an~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 776 ANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred ccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 9999999998887642 2456789999999999999999988776665677888888889999999999999
Q ss_pred HHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchH
Q 003937 369 FDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLS 448 (785)
Q Consensus 369 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 448 (785)
+-.+..|+. .|..|-+.|..++.+++..+-...-+ ..|-..+..-+...|++..|..-|-..-.
T Consensus 847 yiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~d-------- 910 (1636)
T KOG3616|consen 847 YITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAGD-------- 910 (1636)
T ss_pred eEEccCchH-----HHHHHHhhCcchHHHHHHHHhChhhh---hHHHHHHHHHHHhccChhHHHHHHHhhhh--------
Confidence 999998875 47889999999999988776432111 23455566667778899888877655433
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC----CChhHHHHHH------HHHHHcCChHHHHH-------------HHHHH
Q 003937 449 VSNALITMYSKAGNINAARRVFNLIHWR----QETVSWTSMI------VALAQHGLGEEAIQ-------------LFERM 505 (785)
Q Consensus 449 ~~~~li~~y~~~g~~~~A~~~~~~~~~~----p~~~~~~~li------~~~~~~g~~~~A~~-------------~~~~m 505 (785)
+.+-++||...+.+++|.++-+.-... .-...|..-| ..+-++|..+.|+. +-+-.
T Consensus 911 -~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~ 989 (1636)
T KOG3616|consen 911 -FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIA 989 (1636)
T ss_pred -HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHh
Confidence 467889999999999999987654322 0122343222 22334444444332 22222
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcC--CC-----CCCchhH---------HHHHHHHhhcCCHHHH
Q 003937 506 LELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVH--KI-----KPTPSHF---------ASMVDLLGRAGLLQEA 569 (785)
Q Consensus 506 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~--~~-----~p~~~~~---------~~li~~~~~~g~~~~A 569 (785)
.+. -.|.. ...+..-+...|.+++|.+.+-+..+.. ++ .|+..-. .--+.++.+..++..|
T Consensus 990 ~k~-k~~~v--hlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~a 1066 (1636)
T KOG3616|consen 990 AKD-KMGEV--HLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAA 1066 (1636)
T ss_pred hhc-cCccc--hhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHH
Confidence 221 11211 1122223456788888877665554411 11 0111000 0123344445555555
Q ss_pred HHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 003937 570 YNFIENMPLEPDV--VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKS 641 (785)
Q Consensus 570 ~~~~~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 641 (785)
.++-+.- .||. .++.--..+....|++..|+.++-++ ..|+ ..++-|...+.|.+|.++-+.
T Consensus 1067 ervae~h--~~~~l~dv~tgqar~aiee~d~~kae~fllra--nkp~------i~l~yf~e~~lw~dalri~kd 1130 (1636)
T KOG3616|consen 1067 ERVAEAH--CEDLLADVLTGQARGAIEEGDFLKAEGFLLRA--NKPD------IALNYFIEAELWPDALRIAKD 1130 (1636)
T ss_pred HHHHHhh--ChhhhHHHHhhhhhccccccchhhhhhheeec--CCCc------hHHHHHHHhccChHHHHHHHh
Confidence 5444332 1221 12333333344556666666554332 2342 346678888999999887554
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.07 E-value=7.7e-07 Score=85.70 Aligned_cols=452 Identities=13% Similarity=0.151 Sum_probs=248.2
Q ss_pred HHHHHccCChhHHHHHHhhCCCC------CccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccC
Q 003937 86 LSAYAKQGRLDLACEVFNLMPNR------DSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALG 159 (785)
Q Consensus 86 i~~~~~~g~~~~A~~~f~~m~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g 159 (785)
+.-+....++..|+.+++--..- +...| +.-++.+.|++++|+..+....+.. .|+......+.-+.--.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lW--ia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLW--IAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHH--HHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 44556677888888888755431 22233 3446677899999999998877644 455555555554445567
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHHH-HHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcC
Q 003937 160 DLSAGKKVHSFVVKTGLSGCVNVTNS-LLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMI 238 (785)
Q Consensus 160 ~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~ 238 (785)
...+|+++... .|+....+. |.+.-.+.|+-++-..+...+.. ....-.+|.+.....-.+.+|.+++.++.
T Consensus 106 ~Y~eA~~~~~k------a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 106 QYIEAKSIAEK------APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHHHHhh------CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777776544 344444444 44555667776666665555542 22344556666666677888888888775
Q ss_pred CC--CcccHHHH-HHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhccc--chhhHHHHHHHHHHhcCCCCc
Q 003937 239 ER--DVVTWNSM-IAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLE--KLKLGKQIHAYIIRTEFDATG 313 (785)
Q Consensus 239 ~~--~~~~~~~l-i~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~g~~~~~ 313 (785)
.. +-...|.- .-.|.+...++-+.+++.--+++ -|| .|+..-+.+|..-. +-..+++-...+.+.+-..
T Consensus 179 ~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q---~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 179 QDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ---FPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred hcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh---CCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 43 33444443 34566677777777766665443 244 23444444443211 1111222122211111000
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCCh
Q 003937 314 PVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLN 393 (785)
Q Consensus 314 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~ 393 (785)
++.+..+.+.-. + --..-+.|.+++-.+...=+.+--.++--|.+.+++
T Consensus 253 ---------------~~f~~~l~rHNL------V----------vFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dV 301 (557)
T KOG3785|consen 253 ---------------YPFIEYLCRHNL------V----------VFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDV 301 (557)
T ss_pred ---------------chhHHHHHHcCe------E----------EEeCCccHHHhchHHHhhChHhhhhheeeecccccH
Confidence 111111111100 0 000233444444333332222333345557777788
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003937 394 KDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI 473 (785)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 473 (785)
.+|..+.+++.- ..|-......+..+ ++..-......+.-|.+.|+-+
T Consensus 302 qeA~~L~Kdl~P--ttP~EyilKgvv~a------------------------------alGQe~gSreHlKiAqqffqlV 349 (557)
T KOG3785|consen 302 QEAISLCKDLDP--TTPYEYILKGVVFA------------------------------ALGQETGSREHLKIAQQFFQLV 349 (557)
T ss_pred HHHHHHHhhcCC--CChHHHHHHHHHHH------------------------------HhhhhcCcHHHHHHHHHHHHHh
Confidence 888777665521 22322222222211 1111111112234455555544
Q ss_pred ccC----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC
Q 003937 474 HWR----QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT 549 (785)
Q Consensus 474 ~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 549 (785)
... ..+..-.+|.+.+.-..++++.+..++....- +.-|.+.-..+..|.+..|.+.+|.++|-.+.. ..++.+
T Consensus 350 G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~-~~ikn~ 427 (557)
T KOG3785|consen 350 GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISG-PEIKNK 427 (557)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcC-hhhhhh
Confidence 321 12334556666666667777777777776664 233333333467788888999999998876653 233333
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLS-ACRVHKNLDLGKIAAEKLLLIEPDNSGAY 619 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 619 (785)
..-...|...|.+++..+-|.+++-++.-+.+..+...+|. -|.+.+.+=-|-++|+.+..++| ++..|
T Consensus 428 ~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP-~pEnW 497 (557)
T KOG3785|consen 428 ILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP-TPENW 497 (557)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC-Ccccc
Confidence 33334556788899999999999988864445665555554 48899998889999999888888 55543
No 70
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=1.9e-05 Score=84.37 Aligned_cols=81 Identities=17% Similarity=0.071 Sum_probs=55.2
Q ss_pred cccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHH
Q 003937 242 VVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALIS 321 (785)
Q Consensus 242 ~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 321 (785)
...|.---.-+-..|+.+.|+.+|... +. |-++....|-.|+.++|.++-++ ..|....--|.+
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A-~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR 975 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSA-KD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLAR 975 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHh-hh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHH
Confidence 333433444444568888888888776 32 44556666667888887777654 345566677888
Q ss_pred HHHhcCChHHHHHHHHH
Q 003937 322 CYAKVGGVEIAQKIVEQ 338 (785)
Q Consensus 322 ~y~~~g~~~~A~~~~~~ 338 (785)
+|-..|++.+|..+|.+
T Consensus 976 ~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HhhhhHHHHHHHHHHHH
Confidence 88888998888888876
No 71
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.07 E-value=1.2e-06 Score=91.94 Aligned_cols=129 Identities=12% Similarity=0.006 Sum_probs=55.3
Q ss_pred ChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCc-ccHHHHHHHHhhCCCchHHHHHHHHhhhcCC
Q 003937 195 DEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDV-VTWNSMIAGYSQNGYDFEALGMFANMLKDSS 273 (785)
Q Consensus 195 ~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g 273 (785)
++.+|..+|-+-. .-..-|.+|-...++++|..+-+..-.|-. ..-.+.+.++...|+-++|-++-.. .|
T Consensus 546 kfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk~s----dg 616 (1636)
T KOG3616|consen 546 KFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELKES----DG 616 (1636)
T ss_pred hhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhccc----cC
Confidence 5667777664322 112234455555556666555544322211 1122333444445555554332110 11
Q ss_pred CCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhC
Q 003937 274 LKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSG 340 (785)
Q Consensus 274 ~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 340 (785)
.+ .+.|..|.+.|.+-.|.... .....+..|..+...+..++.+..-+++|-.+|+++.
T Consensus 617 -----d~-laaiqlyika~~p~~a~~~a--~n~~~l~~de~il~~ia~alik~elydkagdlfeki~ 675 (1636)
T KOG3616|consen 617 -----DG-LAAIQLYIKAGKPAKAARAA--LNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIH 675 (1636)
T ss_pred -----cc-HHHHHHHHHcCCchHHHHhh--cCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhh
Confidence 11 23344455555544433221 1112223344444455555555555555555555544
No 72
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=5.6e-05 Score=82.74 Aligned_cols=572 Identities=13% Similarity=0.112 Sum_probs=305.3
Q ss_pred CcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCC---------------CCChhhHHHHHHHHHcc
Q 003937 28 NPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMP---------------VKTLCSWNTILSAYAKQ 92 (785)
Q Consensus 28 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~---------------~~~~~~~~~li~~~~~~ 92 (785)
.++...+....|...++.-+..+.-.+..-|...-..+...++|+... ..|....-..|.+.++.
T Consensus 658 sve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt 737 (1666)
T KOG0985|consen 658 SVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKT 737 (1666)
T ss_pred CHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhh
Confidence 344555555555555555555555555555555555566666777653 13444555678888888
Q ss_pred CChhHHHHHHhhCC---------------C----C------------CccHH------HHHHHHHHhCCChhHHHHHHHH
Q 003937 93 GRLDLACEVFNLMP---------------N----R------------DSVSW------TTIIVTYNEIGRFKNAIRMFVE 135 (785)
Q Consensus 93 g~~~~A~~~f~~m~---------------~----~------------~~~~~------~~li~~~~~~g~~~~a~~~~~~ 135 (785)
|.+.+..++-++-. - | |.+.| ...|..|.+.=++...-.+...
T Consensus 738 ~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~ 817 (1666)
T KOG0985|consen 738 GQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGA 817 (1666)
T ss_pred ccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhh
Confidence 88777766654321 0 1 11111 1234444444333333333322
Q ss_pred hHHCCCCCChhhH-------------HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHH
Q 003937 136 MVQDQVLPTQFTV-------------TSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAV 202 (785)
Q Consensus 136 m~~~g~~p~~~t~-------------~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 202 (785)
++.-. -+.... .-+..-+-+.+++..-...++..+..| ..|+.++|+|...|...++-.+- .
T Consensus 818 LLD~d--C~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--f 892 (1666)
T KOG0985|consen 818 LLDVD--CSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER--F 892 (1666)
T ss_pred hhcCC--CcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH--h
Confidence 22211 111111 123333456667777778888888888 56899999999999877654331 2
Q ss_pred HhcCC------------CCCc-----------------------chHHHHHHHHHhcCChHHHHHHh-----------hh
Q 003937 203 FDGMR------------LKNV-----------------------SSWNVVVSLHIHSGRLDLARAQF-----------DQ 236 (785)
Q Consensus 203 ~~~m~------------~~~~-----------------------~~~~~li~~~~~~g~~~~A~~l~-----------~~ 236 (785)
+++=+ .+|+ ..|-...+-+.+..+.+-=.+++ ++
T Consensus 893 LkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDq 972 (1666)
T KOG0985|consen 893 LKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQ 972 (1666)
T ss_pred cccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHH
Confidence 22111 1111 01222223333333333222222 11
Q ss_pred c------CCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCC
Q 003937 237 M------IERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFD 310 (785)
Q Consensus 237 ~------~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 310 (785)
. ...|+..-+.-+.++...+-+.+-++++++.+.+...-.....+-.++-.-+-.-+.....+ .+.+..
T Consensus 973 Vv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~---YI~rLd-- 1047 (1666)
T KOG0985|consen 973 VVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVME---YINRLD-- 1047 (1666)
T ss_pred HHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHH---HHHHhc--
Confidence 1 11245555666778888888888888888874333222222222222222221122222222 222211
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHc
Q 003937 311 ATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQN 390 (785)
Q Consensus 311 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 390 (785)
..-.-.+.......+-+++|..+|++... +..+.+.|+. .-+.++.|.+.-++..+| ..|..+..+-.+.
T Consensus 1048 --nyDa~~ia~iai~~~LyEEAF~ifkkf~~---n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1048 --NYDAPDIAEIAIENQLYEEAFAIFKKFDM---NVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQG 1117 (1666)
T ss_pred --cCCchhHHHHHhhhhHHHHHHHHHHHhcc---cHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhc
Confidence 11111223334455556666666665322 1222222222 123555555555555443 3467777777777
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 003937 391 GLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVF 470 (785)
Q Consensus 391 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 470 (785)
|...+|++-|-+. -|...|.-++..+.+.|.++.-...+..+.+..-+|.+. +.||-+|++.+++.+-++.+
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 7777777666432 345567777777777777777777776666665555544 46777777777766655544
Q ss_pred Hhc--------ccC--------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 003937 471 NLI--------HWR--------------QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGG 528 (785)
Q Consensus 471 ~~~--------~~~--------------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 528 (785)
..- ..+ .++..|..|...+...|++..|...-++. -+..||.-+-.+|...+
T Consensus 1190 ~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~ 1263 (1666)
T KOG0985|consen 1190 AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKE 1263 (1666)
T ss_pred cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchh
Confidence 211 000 14445666777777777777776554432 23357888888888776
Q ss_pred CHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003937 529 LVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAE 606 (785)
Q Consensus 529 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 606 (785)
.+.-|. |.. ..+.....-..-|+..|...|.++|-..+++.. +++. ....|+-|.-.|.+- ..++..+.++
T Consensus 1264 EFrlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~ 1336 (1666)
T KOG0985|consen 1264 EFRLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLK 1336 (1666)
T ss_pred hhhHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 655442 321 233334445677889999999999999888876 5443 344555555445544 3444444444
Q ss_pred HHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 607 KLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 607 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
-.... ...--++.++-.+-.|.|..-++..-.+.
T Consensus 1337 LFwsR-----vNipKviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1337 LFWSR-----VNIPKVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred HHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 44331 11224677888888888887777665543
No 73
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.07 E-value=1.7e-06 Score=85.28 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=122.1
Q ss_pred HHHHhcCCHHHHHHHHHhcc--cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhh-ccCCH
Q 003937 455 TMYSKAGNINAARRVFNLIH--WRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVL-TACT-HGGLV 530 (785)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~-~~g~~ 530 (785)
..+...|++++|.-.|+... .+-+..+|.-|+..|...|+..+|..+-+...+. +.-+..+...+. ..|. ..-.-
T Consensus 342 ~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~r 420 (564)
T KOG1174|consen 342 RLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMR 420 (564)
T ss_pred HHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhH
Confidence 34556788899988888654 2237889999999999999999999888776653 334445555442 3333 23335
Q ss_pred HHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003937 531 EQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKL 608 (785)
Q Consensus 531 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 608 (785)
++|..++++-.+ +.|+ ....+.+..++.+.|..+++..++++. ...||....+.|...++..+.+++|...|..+
T Consensus 421 EKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 421 EKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 788888887653 5666 455677788889999999999999887 56789999999999999999999999999999
Q ss_pred HhhCCCCchh
Q 003937 609 LLIEPDNSGA 618 (785)
Q Consensus 609 ~~~~p~~~~~ 618 (785)
+.++|+|..+
T Consensus 498 Lr~dP~~~~s 507 (564)
T KOG1174|consen 498 LRQDPKSKRT 507 (564)
T ss_pred HhcCccchHH
Confidence 9999976543
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.02 E-value=8.7e-08 Score=106.58 Aligned_cols=244 Identities=14% Similarity=0.056 Sum_probs=169.4
Q ss_pred hhHHHHHHHHHHHcCCCCCHhh-HHHHHHHHh---------ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 003937 393 NKDAVELFRSMVREGPKPNNYT-LSAMLSVSS---------SLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGN 462 (785)
Q Consensus 393 ~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 462 (785)
.++|+.+|++..+. .|+... +..+..++. ..+++++|...++.+++.. +.+...+..+...+...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 45777777777653 454432 222222221 2344677888887777664 3456677778888899999
Q ss_pred HHHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHH
Q 003937 463 INAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNM 539 (785)
Q Consensus 463 ~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 539 (785)
+++|...|++.. ..| +...|..+...+...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999998864 234 466788888999999999999999999998 567653 333444456678999999999988
Q ss_pred hhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 540 MKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVV-AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 540 m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
+.+ ...|+ ...+..+...|...|+.++|...+.+. +..|+.. .++.+...+...| +.|...++.+.+..-..+
T Consensus 432 ~l~--~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRS--QHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHH--hccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 765 22343 445677888899999999999999887 4455543 4555555566666 478887887766322222
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 617 GAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 617 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
..+..+...|+-.|+-+.+..+ +++.+.|
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 2233377778888888888877 7776543
No 75
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.99 E-value=1e-07 Score=96.77 Aligned_cols=213 Identities=18% Similarity=0.127 Sum_probs=151.5
Q ss_pred CchHHHHHHHHHHHHhC-CCCc--hHHHHHHHHHHHhcCCHHHHHHHHHhccc-CC-ChhHHHHHHHHHHHcCChHHHHH
Q 003937 426 ASLDHGKQIHASALRSG-EASS--LSVSNALITMYSKAGNINAARRVFNLIHW-RQ-ETVSWTSMIVALAQHGLGEEAIQ 500 (785)
Q Consensus 426 ~~~~~a~~~~~~~~~~g-~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~ 500 (785)
+..+.+..-+..++... ..|+ ...+..+...|.+.|+.++|...|++... .| +...|+.+...|...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555566666432 2222 45577788889999999999999987642 23 57889999999999999999999
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC--C
Q 003937 501 LFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM--P 577 (785)
Q Consensus 501 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~ 577 (785)
.|++..+ +.|+. .++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. .
T Consensus 120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999998 67865 5788888889999999999999998875 3454432222223345678899999999664 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003937 578 LEPDVVAWGSLLSACRVHKNLDLGKIAAEKLL-------LIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 578 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 647 (785)
..|+...| .+ .....|+...+ ..++.+. ++.|..+.+|..++.+|...|++++|...+++..+..+
T Consensus 195 ~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 LDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 23333222 12 22334554443 2344443 45666778999999999999999999999999886543
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.98 E-value=1.9e-07 Score=91.97 Aligned_cols=197 Identities=16% Similarity=0.183 Sum_probs=109.0
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003937 377 VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITM 456 (785)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 456 (785)
...+..+...|...|++++|...|++..... |+. ...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~----------------------------------~~~~~~la~~ 74 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD--PDD----------------------------------YLAYLALALY 74 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccc----------------------------------HHHHHHHHHH
Confidence 4566777777788888888888887776532 321 2223344445
Q ss_pred HHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHH
Q 003937 457 YSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 457 y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a 533 (785)
|...|++++|.+.|++... +.+...+..+...+...|++++|++.|++.......|. ...+..+..++...|++++|
T Consensus 75 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 75 YQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555554321 11334455555556666666666666666655322222 23444455556666666666
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
...+.+..+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...+...|+.+.|....+.+...
T Consensus 155 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 6666665541 1222445555666666666666666666655 2222 3444555555566666777766666665544
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.8e-05 Score=82.09 Aligned_cols=460 Identities=14% Similarity=0.112 Sum_probs=223.9
Q ss_pred CCCCCCCCCChHHHHHHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCCChhhH
Q 003937 3 TPNPPSLISPLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSW 82 (785)
Q Consensus 3 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 82 (785)
...++...+-+..|.. +......+++++|.+.-..++..+ +-+...+.+-+-++.+.+.+++|..+.+.-..-.....
T Consensus 3 ~~~~~~~~~~~~l~t~-ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~ 80 (652)
T KOG2376|consen 3 KEKSGGSDNLEALLTD-LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS 80 (652)
T ss_pred CcccCCcccHHHHHHH-HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch
Confidence 3344433333334443 445567788999999988888777 55677777778888899999999877665442111111
Q ss_pred HHHHHHHH--ccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC-ChhhHHHHHHHHhccC
Q 003937 83 NTILSAYA--KQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLP-TQFTVTSVLASCTALG 159 (785)
Q Consensus 83 ~~li~~~~--~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g 159 (785)
-.+=.+|| +.+..++|...++....-+..+-..-...+-+.|++++|+++|+.+.+.+..- +...-..++.+-.
T Consensus 81 ~~fEKAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a--- 157 (652)
T KOG2376|consen 81 FFFEKAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA--- 157 (652)
T ss_pred hhHHHHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH---
Confidence 11355565 57778888888775555454455555566677788888888888776654321 1111111111110
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHHHH---HHHHHhCCChHHHHHHHhcCC--------CCCcchHHHHHHHHHhcCChH
Q 003937 160 DLSAGKKVHSFVVKTGLSGCVNVTNSL---LNMYAKVGDEMMAKAVFDGMR--------LKNVSSWNVVVSLHIHSGRLD 228 (785)
Q Consensus 160 ~~~~a~~~~~~~~~~g~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~--------~~~~~~~~~li~~~~~~g~~~ 228 (785)
+... ..+......| ..+|..+ ...+...|++..|+++++... ..|.. -|
T Consensus 158 ----~l~~-~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~--------------eE 217 (652)
T KOG2376|consen 158 ----ALQV-QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTN--------------EE 217 (652)
T ss_pred ----hhhH-HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccc--------------hh
Confidence 0001 0111222222 1122222 223445566666666665441 00000 00
Q ss_pred HHHHHhhhcCCCCc-ccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChh---hHHHHHHHHhcccchhhH--HHHHH
Q 003937 229 LARAQFDQMIERDV-VTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKF---TLASTLSACANLEKLKLG--KQIHA 302 (785)
Q Consensus 229 ~A~~l~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~---t~~~ll~~~~~~~~~~~a--~~~~~ 302 (785)
+ ++... ..--.|..++...|+.++|..++...++.. .+|.. ++..-|.+.....++-.+ ...++
T Consensus 218 e--------ie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~--~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~ 287 (652)
T KOG2376|consen 218 E--------IEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN--PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKK 287 (652)
T ss_pred h--------HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc--CCCchHHHHHhcchhhhccccccCchHHHHHHH
Confidence 0 00000 012234456667788888888887774332 23332 222222232222222111 00000
Q ss_pred HHH-----------HhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHh
Q 003937 303 YII-----------RTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDS 371 (785)
Q Consensus 303 ~~~-----------~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~ 371 (785)
... ...-.....--+.++.+|. +..+.++++-..
T Consensus 288 ~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t-----------------------------------nk~~q~r~~~a~ 332 (652)
T KOG2376|consen 288 SQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT-----------------------------------NKMDQVRELSAS 332 (652)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------------------hhHHHHHHHHHh
Confidence 000 0000000001122222222 234455555555
Q ss_pred cCCCC-HhHHHHHHHHHH--HcCChhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccCchHHHHHHHH--------HH
Q 003937 372 LRDRD-VVAWTAMLVGYE--QNGLNKDAVELFRSMVREGPKPNN--YTLSAMLSVSSSLASLDHGKQIHA--------SA 438 (785)
Q Consensus 372 ~~~~~-~~~~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~--------~~ 438 (785)
.+... ...+.+++.... +...+..|.+++...-+. .|.. ...-..+.-....|+++.|.+++. .+
T Consensus 333 lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~ 410 (652)
T KOG2376|consen 333 LPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSI 410 (652)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhh
Confidence 54422 222333333221 122345555555554432 2322 222333344456666666666666 33
Q ss_pred HHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc-----cCCChh----HHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 003937 439 LRSGEASSLSVSNALITMYSKAGNINAARRVFNLIH-----WRQETV----SWTSMIVALAQHGLGEEAIQLFERMLELG 509 (785)
Q Consensus 439 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~g 509 (785)
.+.+..| .+..+++.+|.+.++-+.|..++++.. ..+... +|.-....-.++|+.++|..+++++.+..
T Consensus 411 ~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 411 LEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred hhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 3333333 344567778888887777777776542 111222 23333334456788888888888887732
Q ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHH
Q 003937 510 IKPDHITYVGVLTACTHGGLVEQGQRYYN 538 (785)
Q Consensus 510 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~ 538 (785)
++|..+...++.+|+.. +++.|..+-.
T Consensus 489 -~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 489 -PNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred -CchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 44556777777777665 3566655543
No 78
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.96 E-value=4.6e-06 Score=89.00 Aligned_cols=426 Identities=13% Similarity=0.032 Sum_probs=263.7
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHhhhcCC----CCcccHHH
Q 003937 175 GLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLK---NVSSWNVVVSLHIHSGRLDLARAQFDQMIE----RDVVTWNS 247 (785)
Q Consensus 175 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~~~~----~~~~~~~~ 247 (785)
.+..|..+|..|.-+...+|++..+-+.|++...- ....|+.+...|.-.|.-..|..+++.-.. |+..+--.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 46678999999999999999999999999987632 456899999999999999999999987633 32233333
Q ss_pred HHH-HHh-hCCCchHHHHHHHHhhhc-----CCCCCChhhHHHHHHHHh--ccc-------chhhHHHHHHHHHHhcC-C
Q 003937 248 MIA-GYS-QNGYDFEALGMFANMLKD-----SSLKPDKFTLASTLSACA--NLE-------KLKLGKQIHAYIIRTEF-D 310 (785)
Q Consensus 248 li~-~~~-~~g~~~~A~~l~~~ml~~-----~g~~p~~~t~~~ll~~~~--~~~-------~~~~a~~~~~~~~~~g~-~ 310 (785)
|+. .|. +-+..+++++.-.+.+.. ..+.|-...+..+-.+.. ... ...++.+.++..++.+. .
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 332 222 346677777776666331 123333333222222221 111 12345556666665553 3
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhCCC--CCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHH---HHH
Q 003937 311 ATGPVGNALISCYAKVGGVEIAQKIVEQSGIS--YLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTA---MLV 385 (785)
Q Consensus 311 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~---li~ 385 (785)
|++..| +.--|+..++++.|.+...+...- ..+...|..+.-.+.-.+++.+|+.+.+...+.-..-++. -+.
T Consensus 478 p~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 478 PLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH 555 (799)
T ss_pred chHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence 433333 334578889999999999986554 3378999999999999999999999998765422221221 122
Q ss_pred HHHHcCChhHHHHHHHHHHHc--CCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC--
Q 003937 386 GYEQNGLNKDAVELFRSMVRE--GPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAG-- 461 (785)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-- 461 (785)
.-..-++.++|+.....++.- ...|-..+. . .|....-..-...... ...-...++..+.......+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~----~----~g~~~~lk~~l~la~~-q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTL----D----EGKLLRLKAGLHLALS-QPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhh----h----hhhhhhhhcccccCcc-cccccchhhHHHHHHHHhhhhh
Confidence 233467788888777776542 001101110 0 0100000000000000 00111122222221111111
Q ss_pred -CHHHHHHHHHhcccCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHH
Q 003937 462 -NINAARRVFNLIHWRQE------TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 462 -~~~~A~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 533 (785)
..+..+..+...+. |+ ...|......+.+.+..++|..-+.+... +.|-. ..|......+...|.+++|
T Consensus 627 ~~se~~Lp~s~~~~~-~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA 703 (799)
T KOG4162|consen 627 AGSELKLPSSTVLPG-PDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEA 703 (799)
T ss_pred cccccccCcccccCC-CCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHH
Confidence 11111111111111 12 22366667778888899999888777776 45544 3566666677888999999
Q ss_pred HHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHH--HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003937 534 QRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYN--FIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKL 608 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 608 (785)
.+.|.... .+.|+ +....++..++.+.|+..-|.. ++..+ .++| +...|-.|...+.+.|+.+.|-..|.-+
T Consensus 704 ~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 704 KEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 99998765 35666 6678889999999997766666 77776 6777 4779999999999999999999999999
Q ss_pred HhhCCCCch
Q 003937 609 LLIEPDNSG 617 (785)
Q Consensus 609 ~~~~p~~~~ 617 (785)
.++++.+|+
T Consensus 781 ~qLe~S~PV 789 (799)
T KOG4162|consen 781 LQLEESNPV 789 (799)
T ss_pred HhhccCCCc
Confidence 999987764
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.96 E-value=1.7e-07 Score=99.21 Aligned_cols=243 Identities=18% Similarity=0.198 Sum_probs=157.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHh-HHHHHHHHHHHcCC
Q 003937 314 PVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVV-AWTAMLVGYEQNGL 392 (785)
Q Consensus 314 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~~g~ 392 (785)
.+..-|..+|...|+++.|..+++..... ..+.+- +..+.+. .-+.+...|...++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~----------------------l~k~~G-~~hl~va~~l~~~a~~y~~~~k 256 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRI----------------------LEKTSG-LKHLVVASMLNILALVYRSLGK 256 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH----------------------HHHccC-ccCHHHHHHHHHHHHHHHHhcc
Confidence 34455777777788777777766652111 111111 1112222 22345667788888
Q ss_pred hhHHHHHHHHHHHc---CCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003937 393 NKDAVELFRSMVRE---GPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRV 469 (785)
Q Consensus 393 ~~~A~~~~~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 469 (785)
+++|..+|+++... ..-++... -..+++.|...|.+.|++++|...
T Consensus 257 ~~eAv~ly~~AL~i~e~~~G~~h~~-------------------------------va~~l~nLa~ly~~~GKf~EA~~~ 305 (508)
T KOG1840|consen 257 YDEAVNLYEEALTIREEVFGEDHPA-------------------------------VAATLNNLAVLYYKQGKFAEAEEY 305 (508)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHH-------------------------------HHHHHHHHHHHHhccCChHHHHHH
Confidence 88888888887642 11112111 123335556667777777776666
Q ss_pred HHhcc---------cCCChhH-HHHHHHHHHHcCChHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHhhccCCHHH
Q 003937 470 FNLIH---------WRQETVS-WTSMIVALAQHGLGEEAIQLFERMLEL---GIKPDH----ITYVGVLTACTHGGLVEQ 532 (785)
Q Consensus 470 ~~~~~---------~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t~~~ll~a~~~~g~~~~ 532 (785)
++... ..|++.+ ++.++..+...+++++|..+++...+. -+.++. -+++.+...+.+.|++++
T Consensus 306 ~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~e 385 (508)
T KOG1840|consen 306 CERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKE 385 (508)
T ss_pred HHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhH
Confidence 65431 1123333 566677788888999999888876542 133333 378889999999999999
Q ss_pred HHHHHHHhhhcC----C-CCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCC
Q 003937 533 GQRYYNMMKNVH----K-IKPT-PSHFASMVDLLGRAGLLQEAYNFIENM--------PLEPD-VVAWGSLLSACRVHKN 597 (785)
Q Consensus 533 a~~~~~~m~~~~----~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~ll~~~~~~g~ 597 (785)
|.++|+++.+.. + ..+. ...++.|...|.+.+..++|.++|.+. +-.|+ ..+|..|...|...|+
T Consensus 386 a~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~ 465 (508)
T KOG1840|consen 386 AEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN 465 (508)
T ss_pred HHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc
Confidence 999998876532 1 1222 445777888889999999888888776 33455 4589999999999999
Q ss_pred HHHHHHHHHHHHh
Q 003937 598 LDLGKIAAEKLLL 610 (785)
Q Consensus 598 ~~~a~~~~~~~~~ 610 (785)
++.|+++.+++..
T Consensus 466 ~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 466 YEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999874
No 80
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=6.9e-05 Score=80.33 Aligned_cols=541 Identities=14% Similarity=0.107 Sum_probs=279.9
Q ss_pred HhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC-----------CCh-hhHHHHHHHH
Q 003937 22 SNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV-----------KTL-CSWNTILSAY 89 (785)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----------~~~-~~~~~li~~~ 89 (785)
-|..-|+.+.|..-.+.+++. .+|..+..+|.+..+++-|+-.+..|.+ .|. ..-.......
T Consensus 737 fyvtiG~MD~AfksI~~IkS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLA 810 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLA 810 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHH
Confidence 455667888877766666553 4688888888888888888877777742 111 2212222223
Q ss_pred HccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHH
Q 003937 90 AKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHS 169 (785)
Q Consensus 90 ~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 169 (785)
...|.+++|..++.+-.. |..|=..|-..|.+.+|+++-+.=-+-.+ ..||..-.+-+-..+|.+.|.+.++
T Consensus 811 ieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyE 882 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYE 882 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHH
Confidence 456777777777766543 44455556666777777776654322111 2244444444445556666665554
Q ss_pred HH----------HHhC---------CCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 003937 170 FV----------VKTG---------LSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLA 230 (785)
Q Consensus 170 ~~----------~~~g---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 230 (785)
.. ++.. -..|...|.---..+-..|++|.|+.++.... .|-++++..|-.|+.++|
T Consensus 883 K~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~fs~VrI~C~qGk~~kA 957 (1416)
T KOG3617|consen 883 KAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYFSMVRIKCIQGKTDKA 957 (1416)
T ss_pred hcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhhhheeeEeeccCchHH
Confidence 32 1111 01233334333344445688888888887665 577888888999999999
Q ss_pred HHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCC
Q 003937 231 RAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFD 310 (785)
Q Consensus 231 ~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~ 310 (785)
.++-++ ..|....-.+.+-|-..|++.+|+..|.+. .+|...|..|-..+--+ ++.....-++-
T Consensus 958 a~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA----------qafsnAIRlcKEnd~~d---~L~nlal~s~~- 1021 (1416)
T KOG3617|consen 958 ARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRA----------QAFSNAIRLCKENDMKD---RLANLALMSGG- 1021 (1416)
T ss_pred HHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHH----------HHHHHHHHHHHhcCHHH---HHHHHHhhcCc-
Confidence 988876 456677778889999999999999999887 35777777665443221 12222211110
Q ss_pred CCcchHHHHHHHHHhcC-ChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcC--------------CC
Q 003937 311 ATGPVGNALISCYAKVG-GVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLR--------------DR 375 (785)
Q Consensus 311 ~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~--------------~~ 375 (785)
.| .......|-.+| ..+.|..+ |-+.|.+.+|+++-=+-. ..
T Consensus 1022 ~d---~v~aArYyEe~g~~~~~AVmL--------------------YHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s 1078 (1416)
T KOG3617|consen 1022 SD---LVSAARYYEELGGYAHKAVML--------------------YHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS 1078 (1416)
T ss_pred hh---HHHHHHHHHHcchhhhHHHHH--------------------HHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC
Confidence 00 011122222232 22333222 333334444433321111 13
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHh--CCCC---chHHH
Q 003937 376 DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRS--GEAS---SLSVS 450 (785)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~---~~~~~ 450 (785)
|+...+--..-|+.+.++++|..++-..++ |...+..|...+ +.-..++-+.|.-. +.++ -..+.
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vL 1148 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVL 1148 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHH
Confidence 555555555666667777777776655432 333333333222 11122222222111 1111 12344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHH---------HH----HHHHHHCCCCCCHHHH
Q 003937 451 NALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAI---------QL----FERMLELGIKPDHITY 517 (785)
Q Consensus 451 ~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~---------~~----~~~m~~~g~~p~~~t~ 517 (785)
..+.+.+.++|.+..|-+-|.+...+ -.-+.++.+.|+.++.. ++ -+-++....+.|+.+.
T Consensus 1149 eqvae~c~qQG~Yh~AtKKfTQAGdK------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~m 1222 (1416)
T KOG3617|consen 1149 EQVAELCLQQGAYHAATKKFTQAGDK------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTM 1222 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHhhhhhH------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHH
Confidence 55666677777777777777666554 22344455555543310 00 0112222345555555
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH-HHHHH--------
Q 003937 518 VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVV-AWGSL-------- 588 (785)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~-~~~~l-------- 588 (785)
..++.-|.+...++.--.+++.... ..++.|..+-.+ .|-+++|.+.+.+...+.+.. .++.|
T Consensus 1223 K~I~tFYTKgqafd~LanFY~~cAq-----iEiee~q~ydKa---~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk 1294 (1416)
T KOG3617|consen 1223 KDIETFYTKGQAFDHLANFYKSCAQ-----IEIEELQTYDKA---MGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVK 1294 (1416)
T ss_pred hhhHhhhhcchhHHHHHHHHHHHHH-----hhHHHHhhhhHH---hHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 5555555555444444444433221 112222221111 244555555555553222211 22222
Q ss_pred --HHHHHhc-CCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 589 --LSACRVH-KNLDLGKIAAEKLLLIEPDN------SGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 589 --l~~~~~~-g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+...... .+..+.+.-.+.+++ +|.. ...|..|+..|....+|..|-+.++.|..+
T Consensus 1295 ~~l~~~q~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1295 VQLRKLQIMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 2222111 133333333333333 3332 235778888899999999999999988765
No 81
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.94 E-value=7.2e-06 Score=85.80 Aligned_cols=435 Identities=12% Similarity=0.107 Sum_probs=228.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 003937 112 SWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYA 191 (785)
Q Consensus 112 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 191 (785)
.|-.++..| ..+++...+.+.+..+. +..-...|....--.+...|+.++|....+..++.. .-+.+.|..+.-.+-
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence 344555555 45677777777777665 222223344333333456788888888877777654 334566777766666
Q ss_pred hCCChHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHhhhcC---CCCcccHHHHHHHHhhCCCchHHHHHH
Q 003937 192 KVGDEMMAKAVFDGMR---LKNVSSWNVVVSLHIHSGRLDLARAQFDQMI---ERDVVTWNSMIAGYSQNGYDFEALGMF 265 (785)
Q Consensus 192 ~~g~~~~A~~~~~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 265 (785)
...++++|.+.|.... ..|...|..+.-.-++.++++-....-.+.. ......|..+..++.-.|+...|..++
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999987654 3456677777666677777776655554442 345678999999999999999999999
Q ss_pred HHhhhcCCCCCChhhHHHHHHH------HhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 003937 266 ANMLKDSSLKPDKFTLASTLSA------CANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQS 339 (785)
Q Consensus 266 ~~ml~~~g~~p~~~t~~~ll~~------~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 339 (785)
++..+...-.|+...+.....- ....|.++.+.+.+...... +......--.-.+.+.+.+++++|..++..+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 9884433345666555433322 23455555555444332211 1222233344566788888888888888888
Q ss_pred CCCCCchHhHHHHH-HHHHhcCCHHHHH-HHHHhcCCC---CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhh
Q 003937 340 GISYLNVIAFTTLL-DGYIKIGDIGPAR-RIFDSLRDR---DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYT 414 (785)
Q Consensus 340 ~~~~~~~~~~~~li-~~~~~~g~~~~A~-~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 414 (785)
..+.||...|.... .++.+-.+.-++. .+|....+. ....-..=++......-.+..-.++..+.+.|+.+-...
T Consensus 246 l~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d 325 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD 325 (700)
T ss_pred HhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh
Confidence 88888666555443 4443333444444 555554431 000000000000111122333445666677776654444
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc-ccCCChhHHHH--HHHHHHH
Q 003937 415 LSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI-HWRQETVSWTS--MIVALAQ 491 (785)
Q Consensus 415 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-~~~p~~~~~~~--li~~~~~ 491 (785)
+.++.. .....+ +. ..++..|...=.-.......+.- .++|....|+. ++..|-.
T Consensus 326 l~SLyk---~p~k~~----~l---------------e~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~ 383 (700)
T KOG1156|consen 326 LRSLYK---DPEKVA----FL---------------EKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDK 383 (700)
T ss_pred hHHHHh---chhHhH----HH---------------HHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHH
Confidence 333321 111111 11 11111221110000000000000 12344444443 3344555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHH
Q 003937 492 HGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAY 570 (785)
Q Consensus 492 ~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 570 (785)
.|+++.|+.+++.... -.|+.+ -|..=.+.+.+.|++++|..++++..+ --.||...-+--+.-..++.+.++|.
T Consensus 384 ~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e--lD~aDR~INsKcAKYmLrAn~i~eA~ 459 (700)
T KOG1156|consen 384 LGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE--LDTADRAINSKCAKYMLRANEIEEAE 459 (700)
T ss_pred cccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh--ccchhHHHHHHHHHHHHHccccHHHH
Confidence 5666666666665555 345543 444444555566666666666655543 12234333333344445556666665
Q ss_pred HHHHhC
Q 003937 571 NFIENM 576 (785)
Q Consensus 571 ~~~~~~ 576 (785)
++....
T Consensus 460 ~~~skF 465 (700)
T KOG1156|consen 460 EVLSKF 465 (700)
T ss_pred HHHHHh
Confidence 554433
No 82
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=6e-08 Score=92.23 Aligned_cols=226 Identities=13% Similarity=0.145 Sum_probs=140.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCc
Q 003937 350 TTLLDGYIKIGDIGPARRIFDSLRD--RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLAS 427 (785)
Q Consensus 350 ~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 427 (785)
+.+..+|.+.|.+.+|.+.|+.-.. +-+.+|-.+-..|.+..++..|+.+|.+-++ ..|-.+||
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld--~fP~~VT~------------ 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLD--SFPFDVTY------------ 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhh--cCCchhhh------------
Confidence 4444555555555555555544332 3344444444555555555555555544433 23444443
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 003937 428 LDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERM 505 (785)
Q Consensus 428 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (785)
..-....+-..++.++|.++++..... .++.+..++..+|.-.++++-|+..|+++
T Consensus 293 ----------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi 350 (478)
T KOG1129|consen 293 ----------------------LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI 350 (478)
T ss_pred ----------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence 222333444445666666666655321 24555555666667777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--HH
Q 003937 506 LELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPD--VV 583 (785)
Q Consensus 506 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~--~~ 583 (785)
++.|+. +...|+.+.-+|...+++|-+..-|..... .. -+|+ ..
T Consensus 351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAls-ta--------------------------------t~~~~aaD 396 (478)
T KOG1129|consen 351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALS-TA--------------------------------TQPGQAAD 396 (478)
T ss_pred HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHh-hc--------------------------------cCcchhhh
Confidence 776643 344555666666666666666655554432 11 1222 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+|-.|.......|++..|.+.|+-++.-+|++..+++.|+-.-.+.|++++|..+++..++.
T Consensus 397 vWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 397 VWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 67777666777899999999999999999999999999999999999999999999988764
No 83
>PRK12370 invasion protein regulator; Provisional
Probab=98.91 E-value=1.9e-07 Score=103.86 Aligned_cols=211 Identities=12% Similarity=0.010 Sum_probs=160.4
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHHHHHHHHH---------hcCCHHHHHHHHHhccc-CC-ChhHHHHHHHHHHHcCC
Q 003937 426 ASLDHGKQIHASALRSGEASSLSVSNALITMYS---------KAGNINAARRVFNLIHW-RQ-ETVSWTSMIVALAQHGL 494 (785)
Q Consensus 426 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~---------~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g~ 494 (785)
+++++|...+...++.. +.+...+..+...|. ..+++++|...+++... .| +...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 34578888888887653 223445555555443 23458899999987643 23 67788888888999999
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCc-hhHHHHHHHHhhcCCHHHHHHH
Q 003937 495 GEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTP-SHFASMVDLLGRAGLLQEAYNF 572 (785)
Q Consensus 495 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 572 (785)
+++|+..|++..+ +.|+. ..+..+..++...|++++|...+++..+ +.|+. ..+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 56765 4777788899999999999999999876 34553 2333445557778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 573 IENMP--LEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 573 ~~~~~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+++.- ..|+ ...+..+...+...|+.++|...++++....|.+......+...|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98872 2354 4456667777889999999999999998888877777888888888888 588887777754
No 84
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.91 E-value=1.3e-07 Score=86.12 Aligned_cols=161 Identities=16% Similarity=0.130 Sum_probs=138.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHH
Q 003937 482 WTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDL 559 (785)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~ 559 (785)
...|.-+|.+.|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|++..+ +.|+ -.+.|....-
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 45566789999999999999999998 577764 888888899999999999999998875 3444 6678888888
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHH
Q 003937 560 LGRAGLLQEAYNFIENMPLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 560 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 635 (785)
+|..|++++|...|++.-..|+ ..+|..+..+..+.|+.+.|+..+++.++.+|+.+.+...+.....+.|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999998833443 457888887788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 003937 636 ANIRKSMKYVGV 647 (785)
Q Consensus 636 ~~~~~~m~~~g~ 647 (785)
..+++....+|.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999998876654
No 85
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.5e-05 Score=78.73 Aligned_cols=183 Identities=13% Similarity=0.046 Sum_probs=137.2
Q ss_pred hcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHH
Q 003937 459 KAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQR 535 (785)
Q Consensus 459 ~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~ 535 (785)
...+++.|+.+-++...- .++..+-.-...+.+.|++++|.-.|+..+. +.|- ..+|..|+.+|...|...+|.-
T Consensus 312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~ 389 (564)
T KOG1174|consen 312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANA 389 (564)
T ss_pred hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHH
Confidence 345677777766654322 1444554445678889999999999999988 6764 4699999999999999999987
Q ss_pred HHHHhhhcCCCCCCchhHHHHH-HHHhh-cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 536 YYNMMKNVHKIKPTPSHFASMV-DLLGR-AGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 536 ~~~~m~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
.-+...+ -++.+..+.+-+. +.+.- .-.-++|.+++++. .++|+ ....+.+...|...|..+.++.++++.+..
T Consensus 390 ~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 390 LANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 7666554 2333344443331 22222 22347899999887 67887 456677778899999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 612 EPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 612 ~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
.| |....+.|++.+.....+.+|...|....+.+
T Consensus 468 ~~-D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 468 FP-DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred cc-ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 99 77899999999999999999999999886543
No 86
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.85 E-value=1.2e-05 Score=87.90 Aligned_cols=542 Identities=14% Similarity=0.075 Sum_probs=303.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHhhCCC---CCccHHHHHHHHHHhCCChhHHHHHHHHhHHCC-CCCChhhHHHHHHHHh
Q 003937 81 SWNTILSAYAKQGRLDLACEVFNLMPN---RDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQ-VLPTQFTVTSVLASCT 156 (785)
Q Consensus 81 ~~~~li~~~~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~ll~~~~ 156 (785)
.|..|...|+..-+...|.+.|+...+ .|..+|..+...|++..+++.|..+.-.--+.. ...-...|...--.+.
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 677788888877788888888887765 356678888899999999998888833322211 0001112222222344
Q ss_pred ccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHH---HHHHHHHhcCChHHHHHH
Q 003937 157 ALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWN---VVVSLHIHSGRLDLARAQ 233 (785)
Q Consensus 157 ~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~li~~~~~~g~~~~A~~l 233 (785)
+.++...+..-++...+.. +-|...|..|..+|..+|++..|.++|++...-++.++- -..-..+..|.+.+|...
T Consensus 574 ea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred CccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 5666777777777777665 557778888999999999999999999877644433222 233445667888888888
Q ss_pred hhhcCCC----------CcccHHHHHHHHhhCCCchHHHHHHHHhhh------cCCCCCChhhHHHHHHHHhcccchhhH
Q 003937 234 FDQMIER----------DVVTWNSMIAGYSQNGYDFEALGMFANMLK------DSSLKPDKFTLASTLSACANLEKLKLG 297 (785)
Q Consensus 234 ~~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~l~~~ml~------~~g~~p~~~t~~~ll~~~~~~~~~~~a 297 (785)
+..+... -..++-.+...+.-.|-..+|.+.|++-+. .....-+...+..+-.+|
T Consensus 653 l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac--------- 723 (1238)
T KOG1127|consen 653 LGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDAC--------- 723 (1238)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHH---------
Confidence 8776321 112232333333334444444444444311 011111222222111111
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCh---H---HHHHHHHHhCCCCCchHhHHHHHHHHHh--------c
Q 003937 298 KQIHAYIIRTEFDATGPVGNALISCYAK----VGGV---E---IAQKIVEQSGISYLNVIAFTTLLDGYIK--------I 359 (785)
Q Consensus 298 ~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~---~---~A~~~~~~~~~~~~~~~~~~~li~~~~~--------~ 359 (785)
.++... .|+ .+...++..+.+ .+.. | -+.+.+-.-...-.+..+|..++..|.+ .
T Consensus 724 -~~f~q~-----e~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~ 796 (1238)
T KOG1127|consen 724 -YIFSQE-----EPS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETM 796 (1238)
T ss_pred -HHHHHh-----ccc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcc
Confidence 111111 122 111222222221 1111 1 0000000000000124556666555544 1
Q ss_pred CCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHH
Q 003937 360 GDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHA 436 (785)
Q Consensus 360 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~ 436 (785)
.+...|...+....+ .+...||.|--. ...|++.-|...|-+-... .+.+..+|..+--.|....+++.|.+.+.
T Consensus 797 ~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 797 KDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFS 874 (1238)
T ss_pred hhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHH
Confidence 233466777765543 677888887655 6667787777777665543 23345667777777788889999999988
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc-----c--cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-
Q 003937 437 SALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI-----H--WRQETVSWTSMIVALAQHGLGEEAIQLFERMLEL- 508 (785)
Q Consensus 437 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-----~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 508 (785)
...... +.+...+--....-...|+.-++..+|..- . .-|+..-|-.-..-..++|+.++-+...+.+...
T Consensus 875 ~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs 953 (1238)
T KOG1127|consen 875 SVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSAS 953 (1238)
T ss_pred hhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhH
Confidence 776542 223333322222234567777888887652 1 1145555655555566777766655444333221
Q ss_pred -------CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHH----HHHHhhcCCHHHHHHHHHhC
Q 003937 509 -------GIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASM----VDLLGRAGLLQEAYNFIENM 576 (785)
Q Consensus 509 -------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~~ 576 (785)
+-.|+ ...|........+.+..+.|.+...+...-....-+...|+.. ...+...|.++.|..-+...
T Consensus 954 ~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~ 1033 (1238)
T KOG1127|consen 954 LALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKE 1033 (1238)
T ss_pred HHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhccc
Confidence 12344 4688888888888888887777666554322223445555533 34556677888777766665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 577 PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG---AYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 577 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
+...|..+-.+-+.. .-.|+++.+...|++++.+.-++.. ....++.....++.-+.|...+-+..
T Consensus 1034 ~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~ 1102 (1238)
T KOG1127|consen 1034 WMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVK 1102 (1238)
T ss_pred chhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHH
Confidence 545555444444444 4467899999999999887543332 33334445556677777777655554
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.79 E-value=2.7e-06 Score=86.43 Aligned_cols=218 Identities=13% Similarity=-0.001 Sum_probs=141.6
Q ss_pred ChhHHHHHHHHHHHcC-CCCCH--hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 003937 392 LNKDAVELFRSMVREG-PKPNN--YTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARR 468 (785)
Q Consensus 392 ~~~~A~~~~~~m~~~g-~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 468 (785)
..+.++.-+.+++... ..|+. ..|...-..+...|+.+.|...+...++.. +.+...++.+...|...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555321 12221 223344445556666666666666666543 3356777888899999999999999
Q ss_pred HHHhccc-CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCC
Q 003937 469 VFNLIHW-RQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKI 546 (785)
Q Consensus 469 ~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 546 (785)
.|++... .| +..+|..+...+...|++++|++.|++..+ ..|+..........+...++.++|...|.+... ..
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~ 195 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KL 195 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hC
Confidence 9987743 23 467788888889999999999999999988 567654222222334566789999999976553 23
Q ss_pred CCCchhHHHHHHHHhhcCCH--HHHHHHHHhC-C----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 003937 547 KPTPSHFASMVDLLGRAGLL--QEAYNFIENM-P----LEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 547 ~p~~~~~~~li~~~~~~g~~--~~A~~~~~~~-~----~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 617 (785)
.|+... ..++..+ .|++ +++.+.+.+. . ..| ....|..+...+.+.|+.++|...|+++++.+|.+..
T Consensus 196 ~~~~~~-~~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 196 DKEQWG-WNIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CccccH-HHHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 343322 2333333 4444 3333333321 1 122 2457889999999999999999999999999975443
No 88
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.78 E-value=9.5e-05 Score=81.23 Aligned_cols=570 Identities=15% Similarity=0.041 Sum_probs=300.8
Q ss_pred hhHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhhHHHHHHHHHccCChhHHHHHHhhCCCCCc-----cHHHHHHHH
Q 003937 48 VFLKNSLMNFYAKTESISYAKKVFDEMPV---KTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDS-----VSWTTIIVT 119 (785)
Q Consensus 48 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~-----~~~~~li~~ 119 (785)
...|..|...|...-+...|++.|+...+ .+..++......|++..+++.|..+.-...+.+. ..|-..--.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 45688888888888888899999998765 4667888999999999999998887433333221 123333345
Q ss_pred HHhCCChhHHHHHHHHhHHCCCCC-ChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHH
Q 003937 120 YNEIGRFKNAIRMFVEMVQDQVLP-TQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMM 198 (785)
Q Consensus 120 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 198 (785)
|.+.++..+|+.-|+...+ +.| |...|..+..+|...|+...|.++|..+.... +.+.+..--..-+-+..|.+.+
T Consensus 572 yLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHH
Confidence 5667788888888877765 334 55577888888888888888888887776653 2222222222233455677777
Q ss_pred HHHHHhcCCCC---------C-cchHHHHHHHHHhcCChHHHHHHhhhcCCC-----------CcccHHHHHHHHhhCCC
Q 003937 199 AKAVFDGMRLK---------N-VSSWNVVVSLHIHSGRLDLARAQFDQMIER-----------DVVTWNSMIAGYSQNGY 257 (785)
Q Consensus 199 A~~~~~~m~~~---------~-~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-----------~~~~~~~li~~~~~~g~ 257 (785)
|...+..+... + ..++-.+...+.-.|-...|.+.|++-++. +...|-.+
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a--------- 719 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA--------- 719 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH---------
Confidence 77777665411 1 223333444444444444555555443221 22222222
Q ss_pred chHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccch---hh-HHHHHHHHHHhcCCCCcchHHHHHHHHHh----cC--
Q 003937 258 DFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKL---KL-GKQIHAYIIRTEFDATGPVGNALISCYAK----VG-- 327 (785)
Q Consensus 258 ~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~---~~-a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g-- 327 (785)
..|..+|... . .. .|+......+..-.-+.+.. +. ....-.......+..+...|..|..-|.+ +|
T Consensus 720 -sdac~~f~q~-e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et 795 (1238)
T KOG1127|consen 720 -SDACYIFSQE-E-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGET 795 (1238)
T ss_pred -hHHHHHHHHh-c-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCc
Confidence 2344445444 2 11 33333333333222222222 10 00000111111122234444444433333 22
Q ss_pred --ChHHHHHHHHHhCC-CCCchHhHHHHHHHHHhcCCHHHHHHHHHhcC---CCCHhHHHHHHHHHHHcCChhHHHHHHH
Q 003937 328 --GVEIAQKIVEQSGI-SYLNVIAFTTLLDGYIKIGDIGPARRIFDSLR---DRDVVAWTAMLVGYEQNGLNKDAVELFR 401 (785)
Q Consensus 328 --~~~~A~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 401 (785)
+...|...+.+... ...+...||.|.-. ...|++.-|...|-.-. ..+..+|..+...+.++.+++-|...|.
T Consensus 796 ~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~ 874 (1238)
T KOG1127|consen 796 MKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFS 874 (1238)
T ss_pred chhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHH
Confidence 22345566665332 33456777777655 55577777777765443 2466677777777788888888888887
Q ss_pred HHHHcCCCCC-HhhHHHHHHHHhccCchHHHHHHHHHHHH----hCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc--
Q 003937 402 SMVREGPKPN-NYTLSAMLSVSSSLASLDHGKQIHASALR----SGEASSLSVSNALITMYSKAGNINAARRVFNLIH-- 474 (785)
Q Consensus 402 ~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-- 474 (785)
..+. +.|+ ...+..........|+.-+...++..-.. .|--++...+-.-.......|+.++-...-+.+.
T Consensus 875 ~~qS--LdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sA 952 (1238)
T KOG1127|consen 875 SVQS--LDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSA 952 (1238)
T ss_pred hhhh--cCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhh
Confidence 7765 3343 33333322223344555555555544211 1223333333333333344555544433333321
Q ss_pred ---------cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHH----HHHhhccCCHHHHHHHHHH
Q 003937 475 ---------WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLEL-GIKPDHITYVGV----LTACTHGGLVEQGQRYYNM 539 (785)
Q Consensus 475 ---------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~l----l~a~~~~g~~~~a~~~~~~ 539 (785)
..| +...|.+.....-..+.++.|.++..+...- ..+-|..+|+.+ ...+...|.++.|..-+..
T Consensus 953 s~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~ 1032 (1238)
T KOG1127|consen 953 SLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWK 1032 (1238)
T ss_pred HHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcc
Confidence 112 4556777666666667777777776664321 023344455532 2234445555555443322
Q ss_pred hhhcCCCCCCchhHHHHHHHH--hhcCCHHHHHHHHHhC----CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 003937 540 MKNVHKIKPTPSHFASMVDLL--GRAGLLQEAYNFIENM----PLEPDVV-AWGSLLSACRVHKNLDLGKIAAEKLLLIE 612 (785)
Q Consensus 540 m~~~~~~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~~----~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 612 (785)
.|-..--..+-..+ .-.|+++++.+.|++. .-+.|.+ ....++......+.-+.|...+-+...+.
T Consensus 1033 -------~~~evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls 1105 (1238)
T KOG1127|consen 1033 -------EWMEVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS 1105 (1238)
T ss_pred -------cchhHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhC
Confidence 22111111111111 2357888888888887 2233433 33444444566677777888777777777
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 613 PDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 613 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
|.+......|.-++.-..+-..-..+.++..
T Consensus 1106 ~~~~~sll~L~A~~ild~da~~ssaileel~ 1136 (1238)
T KOG1127|consen 1106 KVQASSLLPLPAVYILDADAHGSSAILEELE 1136 (1238)
T ss_pred ccchhhHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 7677766666666554444444444444443
No 89
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.76 E-value=1.4e-06 Score=83.24 Aligned_cols=251 Identities=12% Similarity=0.106 Sum_probs=163.1
Q ss_pred hcccchhhHHHHHHHHHHhcC-CC--------CcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhc
Q 003937 289 ANLEKLKLGKQIHAYIIRTEF-DA--------TGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKI 359 (785)
Q Consensus 289 ~~~~~~~~a~~~~~~~~~~g~-~~--------~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~ 359 (785)
-..+++..+...+....+... .| |-.--+.+...|.+.|.+.+|.+.|+......|-+.||..|-.+|.+.
T Consensus 190 yhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ri 269 (478)
T KOG1129|consen 190 YHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRI 269 (478)
T ss_pred HhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHh
Confidence 345666666555444443322 11 222337788999999999999999999998888999999999999999
Q ss_pred CCHHHHHHHHHhcCC--CCHhHH-HHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCchHHHHHHH
Q 003937 360 GDIGPARRIFDSLRD--RDVVAW-TAMLVGYEQNGLNKDAVELFRSMVREGPKPN-NYTLSAMLSVSSSLASLDHGKQIH 435 (785)
Q Consensus 360 g~~~~A~~~f~~~~~--~~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~ 435 (785)
.+...|+.+|.+-.+ |..++| .-+...+-..++.++|.++|+...+. .|+ ......+...+.-.++.+.|...+
T Consensus 270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryY 347 (478)
T KOG1129|consen 270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYY 347 (478)
T ss_pred ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHH
Confidence 999999999998876 444444 44566777788999999999988764 332 223333333333334444444444
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 003937 436 ASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI 515 (785)
Q Consensus 436 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 515 (785)
..+...| .. +...|+.+.-+|.-.++++-++.-|++.+..--.|+..
T Consensus 348 RRiLqmG--------------------------------~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a 394 (478)
T KOG1129|consen 348 RRILQMG--------------------------------AQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA 394 (478)
T ss_pred HHHHHhc--------------------------------CC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh
Confidence 4444333 22 55566666666666667777777777766654445442
Q ss_pred --HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC
Q 003937 516 --TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM 576 (785)
Q Consensus 516 --t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 576 (785)
.|-.+.......|++..|.+.|+.... .-....+.++.|.-+-.+.|++++|..++...
T Consensus 395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 395 ADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 455565566667777777777765543 22233455666666666677777777666665
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.75 E-value=5.3e-05 Score=79.53 Aligned_cols=238 Identities=13% Similarity=0.103 Sum_probs=153.3
Q ss_pred HHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 003937 245 WNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYA 324 (785)
Q Consensus 245 ~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 324 (785)
+..++..| ..+++...+++.+..+++.+-.++....-.+. +...|+.+.|.......++..+ .+.+.|..+.-.+.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~--L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKKFPEHGESLAMKGLT--LNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHhCCccchhHHhccch--hhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHh
Confidence 33344433 45677788888888766555455544333222 3456777777766665555332 23355666776777
Q ss_pred hcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHHHHHH
Q 003937 325 KVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVELF 400 (785)
Q Consensus 325 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 400 (785)
...++++|++.|.......+ |...|--+.-.-++.++++.....-....+ ..-..|.....++.-.|++..|..+.
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999998666555 566777666666677777766665555443 34568888888888999999999999
Q ss_pred HHHHHcC-CCCCHhhHHHHH------HHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003937 401 RSMVREG-PKPNNYTLSAML------SVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI 473 (785)
Q Consensus 401 ~~m~~~g-~~p~~~t~~~ll------~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 473 (785)
++..+.. -.|+...|.... ......|.++.+.+.+...... +......-..-.+.+.+.|++++|..++..+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 8887654 246655554332 2234566667766665544332 2222333345567788899999999999988
Q ss_pred ccC-CChhHHHHHHH
Q 003937 474 HWR-QETVSWTSMIV 487 (785)
Q Consensus 474 ~~~-p~~~~~~~li~ 487 (785)
..+ ||..-|.-.+.
T Consensus 246 l~rnPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 246 LERNPDNLDYYEGLE 260 (700)
T ss_pred HhhCchhHHHHHHHH
Confidence 655 77766655443
No 91
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.75 E-value=0.00012 Score=78.92 Aligned_cols=94 Identities=18% Similarity=0.081 Sum_probs=68.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHHc
Q 003937 315 VGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRD---VVAWTAMLVGYEQN 390 (785)
Q Consensus 315 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~ 390 (785)
++.-+...|-..|++++|++.+++.....| .+..|..-.+.|-+.|++.+|...++....-| -..=+-.+..+.++
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa 275 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRA 275 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC
Confidence 335556777788888888888888666666 46678888888888888888888888776543 33334456667788
Q ss_pred CChhHHHHHHHHHHHcCC
Q 003937 391 GLNKDAVELFRSMVREGP 408 (785)
Q Consensus 391 g~~~~A~~~~~~m~~~g~ 408 (785)
|+.++|.+++....+.+.
T Consensus 276 ~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 276 GRIEEAEKTASLFTREDV 293 (517)
T ss_pred CCHHHHHHHHHhhcCCCC
Confidence 888888888877766554
No 92
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.70 E-value=2.3e-05 Score=84.36 Aligned_cols=281 Identities=16% Similarity=0.177 Sum_probs=183.7
Q ss_pred HHHHhcCChHHHHHHHHHhCCCCCch-HhHHHHHHHHHhcCCHHHHHHHHHhcCCC--CHhH-HHHHHHHHHHc-----C
Q 003937 321 SCYAKVGGVEIAQKIVEQSGISYLNV-IAFTTLLDGYIKIGDIGPARRIFDSLRDR--DVVA-WTAMLVGYEQN-----G 391 (785)
Q Consensus 321 ~~y~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~-~~~li~~~~~~-----g 391 (785)
..+...|++++|++.+++....-+|. .........+.+.|+.++|..++..+.++ +-.. |..+..+.... .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 34567788888888887765555554 44556678888888888888888888763 3333 34444443222 2
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCch-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHH
Q 003937 392 LNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASL-DHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVF 470 (785)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~ 470 (785)
..+...++|+++...- |.......+.-.+.....+ ..+...+....+.|+|+ +++.|-..|....+.+-..+++
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 4566777888776542 4444333332222221122 33455556666667544 4455666666555555445555
Q ss_pred Hhcc-----------------cCCChhHH--HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCH
Q 003937 471 NLIH-----------------WRQETVSW--TSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLV 530 (785)
Q Consensus 471 ~~~~-----------------~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~ 530 (785)
.... ..|....| .-+...|-..|++++|+++.++.++ ..|+.+ .|..-...+-+.|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCH
Confidence 4431 12344445 4456678899999999999999999 578865 788888899999999
Q ss_pred HHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCC---CCC--CH----HHHH--HHHHHHHhcCCHH
Q 003937 531 EQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMP---LEP--DV----VAWG--SLLSACRVHKNLD 599 (785)
Q Consensus 531 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~p--~~----~~~~--~ll~~~~~~g~~~ 599 (785)
++|.+..+...+ --.-|...-+-.+..+.|+|++++|.+++.... ..| |. ..|- ....+|.+.|++.
T Consensus 245 ~~Aa~~~~~Ar~--LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 245 KEAAEAMDEARE--LDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred HHHHHHHHHHHh--CChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999998875 123345555667788899999999998877662 122 11 2453 3355588999999
Q ss_pred HHHHHHHHHHh
Q 003937 600 LGKIAAEKLLL 610 (785)
Q Consensus 600 ~a~~~~~~~~~ 610 (785)
.|+.-+..+.+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 99988887765
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.65 E-value=2e-06 Score=86.03 Aligned_cols=155 Identities=15% Similarity=0.166 Sum_probs=88.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh----hccCC
Q 003937 454 ITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTAC----THGGL 529 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~----~~~g~ 529 (785)
..+|...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+ ...|.. ...+..++ ...+.
T Consensus 109 A~i~~~~~~~~~AL~~l~~~---~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG---GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT---TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCHHHHHHHHHcc---CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCchh
Confidence 34566678888887777654 2556666677778888888888888888876 344443 22233322 22235
Q ss_pred HHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 003937 530 VEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNL-DLGKIAAE 606 (785)
Q Consensus 530 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~a~~~~~ 606 (785)
+.+|..+|+++.. ...+++.+.+.+.-+....|++++|.+++.+. ...| |..++..++-.....|+. +.+.+...
T Consensus 183 ~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 6677777777654 33455555666666666666666666665554 3333 244444555554555554 45556666
Q ss_pred HHHhhCCCCc
Q 003937 607 KLLLIEPDNS 616 (785)
Q Consensus 607 ~~~~~~p~~~ 616 (785)
++....|+++
T Consensus 261 qL~~~~p~h~ 270 (290)
T PF04733_consen 261 QLKQSNPNHP 270 (290)
T ss_dssp HCHHHTTTSH
T ss_pred HHHHhCCCCh
Confidence 6666666443
No 94
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.62 E-value=0.0012 Score=68.29 Aligned_cols=174 Identities=16% Similarity=0.164 Sum_probs=133.0
Q ss_pred hhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCHHHHHHHH
Q 003937 393 NKDAVELFRSMVREG-PKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEAS-SLSVSNALITMYSKAGNINAARRVF 470 (785)
Q Consensus 393 ~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~ 470 (785)
.+.....+++.+..- ..|+ .+|...++...+...+..|+.+|..+.+.+..+ ++.++++++..|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 455666666665532 3444 567888888889999999999999999988777 8999999999887 57889999999
Q ss_pred Hhc-ccCCChhHH-HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhhhcCC-
Q 003937 471 NLI-HWRQETVSW-TSMIVALAQHGLGEEAIQLFERMLELGIKPDH--ITYVGVLTACTHGGLVEQGQRYYNMMKNVHK- 545 (785)
Q Consensus 471 ~~~-~~~p~~~~~-~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~- 545 (785)
+-- +.-+|...| +..++-+..-++-..|..+|++....++.||. ..|..+|.--+..|++..+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 854 433555544 56677788889999999999999998888876 4899999999999999999998887765443
Q ss_pred -CCCCchhHHHHHHHHhhcCCHHH
Q 003937 546 -IKPTPSHFASMVDLLGRAGLLQE 568 (785)
Q Consensus 546 -~~p~~~~~~~li~~~~~~g~~~~ 568 (785)
..+...+-..+++.|+-.+....
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~c 528 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYPC 528 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccccc
Confidence 44444455666777766555433
No 95
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=6.1e-06 Score=77.83 Aligned_cols=303 Identities=14% Similarity=0.102 Sum_probs=184.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHH-HHHHHHHcC
Q 003937 316 GNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD--RDVVAWTA-MLVGYEQNG 391 (785)
Q Consensus 316 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~g 391 (785)
+++.+.-+.+..++++|++++..-.+..| +....+.+..+|....++..|-..++++.. |...-|.. -...+-+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 45555556677778888888777666666 666777778888888888888888887765 32222221 134556778
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHH--HhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003937 392 LNKDAVELFRSMVREGPKPNNYTLSAMLSV--SSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRV 469 (785)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 469 (785)
.+.+|+++...|... |+...-..-+.+ ..+.+++..++.+..+.-.. .+..+.+...-...+.|+.+.|.+-
T Consensus 93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaAvqk 166 (459)
T KOG4340|consen 93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAAVQK 166 (459)
T ss_pred ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHHHHH
Confidence 888888888877642 332222222222 23445565565555544221 1222333333345577777887777
Q ss_pred HHhcccC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCC
Q 003937 470 FNLIHWR---QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKI 546 (785)
Q Consensus 470 ~~~~~~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 546 (785)
|+....- .....||.-+.-| +.|+++.|+++..++.+.|++-.+.. ..|...++..+ +.+ |
T Consensus 167 FqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPEl---------gIGm~tegiDv-rsv----g- 230 (459)
T KOG4340|consen 167 FQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPEL---------GIGMTTEGIDV-RSV----G- 230 (459)
T ss_pred HHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCcc---------CccceeccCch-hcc----c-
Confidence 7765321 2445566555433 45677777877777777776543321 00111111110 000 0
Q ss_pred CCCc-------hhHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 003937 547 KPTP-------SHFASMVDLLGRAGLLQEAYNFIENMP----LEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 547 ~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 615 (785)
.|-. ..+|.-...+.+.|+.+.|.+-+-.|| .+.|++|...+.-. -..+++..+.+-+.-+++++|-.
T Consensus 231 Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPfP 309 (459)
T KOG4340|consen 231 NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPFP 309 (459)
T ss_pred chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCCC
Confidence 0111 123333345678999999999999994 34577777655322 34566777888888888999988
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHH
Q 003937 616 SGAYSALCNLYSSCGKWEDAANIRKS 641 (785)
Q Consensus 616 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 641 (785)
+.||..++-+|++..-++-|..++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 89999999999999999999888754
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.59 E-value=6.4e-07 Score=89.55 Aligned_cols=193 Identities=15% Similarity=0.089 Sum_probs=129.8
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCC---ChhHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003937 444 ASSLSVSNALITMYSKAGNINAARRVFNLIHWRQ---ETVSWTSM-IVALAQHGLGEEAIQLFERMLELGIKPDHITYVG 519 (785)
Q Consensus 444 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p---~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 519 (785)
.|.......+...+...++-+.+..-+++....+ +..++..+ ...+...|++++|++++++- .+......
T Consensus 63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al 136 (290)
T PF04733_consen 63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL 136 (290)
T ss_dssp SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence 4444443344333333344455555554432221 11222222 23456679999999988642 34456667
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCCCCchh---HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSH---FASMVDLLGRAGLLQEAYNFIENM--PLEPDVVAWGSLLSACRV 594 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~ 594 (785)
.+..+.+.++++.|.+.++.|.+ +..|... ..+.+..+.-.+.+.+|..+|+++ ...+++.+.+.+..+...
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~ 213 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQ---IDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ 213 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHC---CSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh---cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 77889999999999999999975 3344222 223334333335799999999999 345678888888889999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCh-HHHHHHHHHHHhC
Q 003937 595 HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKW-EDAANIRKSMKYV 645 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~~ 645 (785)
.|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+++.+++..
T Consensus 214 ~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 214 LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999 6677888887653
No 97
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.59 E-value=1.6e-05 Score=72.78 Aligned_cols=190 Identities=11% Similarity=0.068 Sum_probs=128.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC-C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccC
Q 003937 452 ALITMYSKAGNINAARRVFNLIHWR-Q-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGG 528 (785)
Q Consensus 452 ~li~~y~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g 528 (785)
.|.-.|...|+...|..-+++.... | +..+|..+...|.+.|..+.|.+-|++... +.|+. ...|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCC
Confidence 4555677777777777777765422 2 445677777777777777777777777777 56654 35666666666777
Q ss_pred CHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 003937 529 LVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAE 606 (785)
Q Consensus 529 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 606 (785)
.+++|...|+....+....--..+|..++-.-.+.|+.+.|.+.|++. ...|+ ..+...+.......|++-.|...++
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 777777777777664333333556667776677777777777777766 44454 4456666666777777777777777
Q ss_pred HHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 607 KLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 607 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
+.....+.+....-..+.+--..|+-+.+-++=..+.
T Consensus 198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 7776555566666666677777777777766655554
No 98
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.57 E-value=0.00011 Score=71.09 Aligned_cols=292 Identities=15% Similarity=0.094 Sum_probs=151.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHH---HHHHHcCChh
Q 003937 319 LISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAML---VGYEQNGLNK 394 (785)
Q Consensus 319 li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~ 394 (785)
|-..+...|++.+|+.-|....+.+| +-.++..-...|...|+...|..-|+++.+-.+..+.+-| ..+.+.|.++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 44445556777777777776666555 3445555566677777777777666666553333333333 2456777777
Q ss_pred HHHHHHHHHHHcCCCCCH--------------hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc
Q 003937 395 DAVELFRSMVREGPKPNN--------------YTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKA 460 (785)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~--------------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~ 460 (785)
+|..-|+..++....-+. ......+..+...|+...+......+++. .+.|...+..-..+|...
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~~Rakc~i~~ 202 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQARAKCYIAE 202 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHHHHHHHHHhc
Confidence 777777777664321110 01122233344456666666666665553 244566666666777777
Q ss_pred CCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHH---HH---------HHhh
Q 003937 461 GNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVG---VL---------TACT 525 (785)
Q Consensus 461 g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~---ll---------~a~~ 525 (785)
|++..|..-++.... ..+..+.--+-..+-.-|+.+.++...++-++ +.||.. +|.. += ....
T Consensus 203 ~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred CcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777665554421 12455555555566667777777777777666 566653 2211 10 0112
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCC-----chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 003937 526 HGGLVEQGQRYYNMMKNVHKIKPT-----PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNL 598 (785)
Q Consensus 526 ~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 598 (785)
..+.|.++.+-.+...+ ..|. ...+..+-..|...|++.+|+....+. .+.|| +.++.--..+|.....+
T Consensus 281 e~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~Y 357 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMY 357 (504)
T ss_pred hhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHH
Confidence 22333333333333322 1222 111222333444445555555544443 33443 44444444445555555
Q ss_pred HHHHHHHHHHHhhCCCCc
Q 003937 599 DLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 599 ~~a~~~~~~~~~~~p~~~ 616 (785)
+.|+.-|+++.+.+|+|.
T Consensus 358 D~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 358 DDAIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHHHHHHhcCcccH
Confidence 555555555555555443
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.56 E-value=0.00017 Score=76.12 Aligned_cols=296 Identities=12% Similarity=-0.006 Sum_probs=166.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHh---HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHh-hHHH--
Q 003937 347 IAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVV---AWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNY-TLSA-- 417 (785)
Q Consensus 347 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~-- 417 (785)
..|..+...+...|+.+++.+.+....+ ++.. ........+...|++++|.+++++..+. .|+.. .+..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~ 84 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhH
Confidence 3444455555555555554444443321 1111 1122233456678888888888887764 34333 2221
Q ss_pred -HHHHHhccCchHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCHHHHHHHHHhcccC-C-ChhHHHHHHHHHHHcC
Q 003937 418 -MLSVSSSLASLDHGKQIHASALRSGEASS-LSVSNALITMYSKAGNINAARRVFNLIHWR-Q-ETVSWTSMIVALAQHG 493 (785)
Q Consensus 418 -ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g 493 (785)
........+....+.+.+.. .....|+ ......+...+...|++++|...+++.... | +...+..+...|...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 11111123444444444433 1122232 334445666788889999999888876422 3 4566777888888899
Q ss_pred ChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhH-H--HHHHHHhhcCCHH
Q 003937 494 LGEEAIQLFERMLELGI-KPDH--ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHF-A--SMVDLLGRAGLLQ 567 (785)
Q Consensus 494 ~~~~A~~~~~~m~~~g~-~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~ 567 (785)
++++|+..+++.....- .|+. ..|..+...+...|++++|..++++........+..... + .++..+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999888876421 1232 234567777888899999999998875321111111111 1 2333344444333
Q ss_pred HHHHH---HHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-C---C-----CchhHHHHHHHHHhcCC
Q 003937 568 EAYNF---IENM-PLEPD---VVAWGSLLSACRVHKNLDLGKIAAEKLLLIE-P---D-----NSGAYSALCNLYSSCGK 631 (785)
Q Consensus 568 ~A~~~---~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-p---~-----~~~~~~~l~~~~~~~g~ 631 (785)
.+.++ .... +..|. .........++...|+.+.|...++.+.... . . ..........++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 22222 1111 11111 1222345556778889999999998886632 1 1 23455677778899999
Q ss_pred hHHHHHHHHHHHhCC
Q 003937 632 WEDAANIRKSMKYVG 646 (785)
Q Consensus 632 ~~~a~~~~~~m~~~g 646 (785)
+++|.+.+......+
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999887543
No 100
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=0.0005 Score=71.04 Aligned_cols=238 Identities=17% Similarity=0.149 Sum_probs=136.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC
Q 003937 349 FTTLLDGYIKIGDIGPARRIFDSLRD--RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLA 426 (785)
Q Consensus 349 ~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 426 (785)
...+.+...+..+++.|..-++...+ .++.-++....+|...|.+.+.........+.|..- ..-|+.+-.++
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~-rad~klIak~~---- 301 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGREL-RADYKLIAKAL---- 301 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHH-HHHHHHHHHHH----
Confidence 34445555555566666666655443 233344555566777776666665555543332110 00111111000
Q ss_pred chHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--C-CChhHHHHHHHHHHHcCChHHHHHHHH
Q 003937 427 SLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--R-QETVSWTSMIVALAQHGLGEEAIQLFE 503 (785)
Q Consensus 427 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-p~~~~~~~li~~~~~~g~~~~A~~~~~ 503 (785)
..+...|.+.++++.|...|.+... + ||. ..+....++++...+
T Consensus 302 ------------------------~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e 348 (539)
T KOG0548|consen 302 ------------------------ARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAE 348 (539)
T ss_pred ------------------------HHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHH
Confidence 1133456666777777777766421 1 222 122233445555444
Q ss_pred HHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 003937 504 RMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD 581 (785)
Q Consensus 504 ~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 581 (785)
...- +.|+.. -...-...+.+.|++..|...+.++++. -+-|...|..-.-.|.+.|.+.+|++=.+.. ...|+
T Consensus 349 ~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~ 424 (539)
T KOG0548|consen 349 RKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN 424 (539)
T ss_pred HHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch
Confidence 4443 444432 1222255677788888888888887752 2455777887888888888888877765554 44565
Q ss_pred H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 003937 582 V-VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS 628 (785)
Q Consensus 582 ~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 628 (785)
. ..|.-=..++....+++.|.+.|++.++.+|++...-..+...+..
T Consensus 425 ~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 425 FIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 3 3454445556667789999999999999999887776666666554
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=8e-06 Score=84.51 Aligned_cols=216 Identities=18% Similarity=0.219 Sum_probs=167.0
Q ss_pred HHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHHH
Q 003937 322 CYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAV 397 (785)
Q Consensus 322 ~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~ 397 (785)
-+.+.|++.+|.-.|+.....+| +..+|..|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.+|+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 36788999999999998777666 789999999999999999999999988876 36677777888899999999999
Q ss_pred HHHHHHHHcCCC--------CCHhhHHHHHHHHhccCchHHHHHHHHHHH-HhCCCCchHHHHHHHHHHHhcCCHHHHHH
Q 003937 398 ELFRSMVREGPK--------PNNYTLSAMLSVSSSLASLDHGKQIHASAL-RSGEASSLSVSNALITMYSKAGNINAARR 468 (785)
Q Consensus 398 ~~~~~m~~~g~~--------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 468 (785)
..++..+....+ ++..+-.. ........+....++|-.+. ..+..+|..+...|.-.|--.|++++|..
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999998664311 00000000 11122223344445544444 44656888888999999999999999999
Q ss_pred HHHhc-ccCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 469 VFNLI-HWRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 469 ~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
.|+.. ..+| |...||.|...++...+.++|+..|++.++ ++|+-+ ....|.-+|...|.+++|...|-...
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99976 4555 677899999999999999999999999999 899986 55567778999999999998876554
No 102
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.49 E-value=0.0012 Score=79.47 Aligned_cols=48 Identities=10% Similarity=-0.072 Sum_probs=23.5
Q ss_pred HHhcCChHHHHHHhhhcCC----CCcccHHHHHHHHhhCCCchHHHHHHHHh
Q 003937 221 HIHSGRLDLARAQFDQMIE----RDVVTWNSMIAGYSQNGYDFEALGMFANM 268 (785)
Q Consensus 221 ~~~~g~~~~A~~l~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m 268 (785)
+...|+++.+.+.++.++. .+..........+...|++++|..++...
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a 435 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARA 435 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3445566666666555421 12222223333444556666666666554
No 103
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.47 E-value=0.00023 Score=67.54 Aligned_cols=384 Identities=13% Similarity=0.066 Sum_probs=194.1
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhcCCC---CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhc
Q 003937 214 WNVVVSLHIHSGRLDLARAQFDQMIER---DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACAN 290 (785)
Q Consensus 214 ~~~li~~~~~~g~~~~A~~l~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~ 290 (785)
+++.+..+.+..++++|.+++..-.++ +....+.|..+|....++..|-..++++ . ...|...-|..-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL-~--ql~P~~~qYrlY------ 83 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQL-G--QLHPELEQYRLY------ 83 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHH-H--hhChHHHHHHHH------
Confidence 455666666777777777776655443 3344555666666666777777777666 2 233443333110
Q ss_pred ccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchH--hHHHHHHHHHhcCCHHHHHHH
Q 003937 291 LEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVI--AFTTLLDGYIKIGDIGPARRI 368 (785)
Q Consensus 291 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~ 368 (785)
-...+.+.+.+.+|+++...|.+.+ +.. +...-.......+++..++.+
T Consensus 84 ----------------------------~AQSLY~A~i~ADALrV~~~~~D~~-~L~~~~lqLqaAIkYse~Dl~g~rsL 134 (459)
T KOG4340|consen 84 ----------------------------QAQSLYKACIYADALRVAFLLLDNP-ALHSRVLQLQAAIKYSEGDLPGSRSL 134 (459)
T ss_pred ----------------------------HHHHHHHhcccHHHHHHHHHhcCCH-HHHHHHHHHHHHHhcccccCcchHHH
Confidence 0112233444555555555544431 111 111111122234455555555
Q ss_pred HHhcCC-CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC--
Q 003937 369 FDSLRD-RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEAS-- 445 (785)
Q Consensus 369 f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-- 445 (785)
.++.+. .+..+.+.......+.|+++.|++-|+...+-|---....|+..+ +..+.++.+.|.....+++.+|+..
T Consensus 135 veQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HP 213 (459)
T KOG4340|consen 135 VEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHP 213 (459)
T ss_pred HHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCC
Confidence 555552 333333333333445566666666665554432222223444333 2334455555555555555544321
Q ss_pred -----------c--------hHHHHHHHH-------HHHhcCCHHHHHHHHHhcccC----CChhHHHHHHHHHHHcCCh
Q 003937 446 -----------S--------LSVSNALIT-------MYSKAGNINAARRVFNLIHWR----QETVSWTSMIVALAQHGLG 495 (785)
Q Consensus 446 -----------~--------~~~~~~li~-------~y~~~g~~~~A~~~~~~~~~~----p~~~~~~~li~~~~~~g~~ 495 (785)
| ...-++++. .+.+.|+.+.|.+.+..|+.+ .|++|...+.-. -..+++
T Consensus 214 ElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p 292 (459)
T KOG4340|consen 214 ELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARP 292 (459)
T ss_pred ccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCc
Confidence 1 111123333 456789999999999999754 477776554322 124555
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc-CCHHHHHHHH
Q 003937 496 EEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA-GLLQEAYNFI 573 (785)
Q Consensus 496 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~ 573 (785)
.+..+-+.-+.+ +.| ...||..++-.|++..-++-|-.++.+-....-.-.+...|+ |++.+.-+ -..++|++-+
T Consensus 293 ~~g~~KLqFLL~--~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL 369 (459)
T KOG4340|consen 293 TEGFEKLQFLLQ--QNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKL 369 (459)
T ss_pred cccHHHHHHHHh--cCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHH
Confidence 555555555555 345 346999999999999888888887754321000011222333 33444333 3566666655
Q ss_pred HhCCCCC-C-HHHHHHHHHHHHhcCCHH----HHHHHHHHHHhhC-CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 574 ENMPLEP-D-VVAWGSLLSACRVHKNLD----LGKIAAEKLLLIE-PDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 574 ~~~~~~p-~-~~~~~~ll~~~~~~g~~~----~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+.+...- + .-....-+. -.++.+-+ .+.+-+++.+++- | ...+-++.|.+..++..+.+.|+.-.+.
T Consensus 370 ~~La~~l~~kLRklAi~vQ-e~r~~~dd~a~R~ai~~Yd~~LE~YLP----VlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 370 DGLAGMLTEKLRKLAIQVQ-EARHNRDDEAIRKAVNEYDETLEKYLP----VLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHhcccHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 5441000 0 000000011 11222222 2333444444432 3 5566778899999999999998876543
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=5.6e-06 Score=85.64 Aligned_cols=219 Identities=13% Similarity=0.139 Sum_probs=162.5
Q ss_pred hccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-C-CChhHHHHHHHHHHHcCChHHHHH
Q 003937 423 SSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW-R-QETVSWTSMIVALAQHGLGEEAIQ 500 (785)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~-p~~~~~~~li~~~~~~g~~~~A~~ 500 (785)
.+.|++.+|.-.|+..++.. +-+...|--|...-...++-..|+..+.+... . .|....-+|.-.|...|.-.+|+.
T Consensus 296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~ 374 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK 374 (579)
T ss_pred HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence 46677888888888777764 34566666676667777777777777776532 2 256667777777888888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHH--------HHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHH
Q 003937 501 LFERMLELGIKPDHITYVGV--------LTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNF 572 (785)
Q Consensus 501 ~~~~m~~~g~~p~~~t~~~l--------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 572 (785)
.|+.-+.. +|...-...- -........+....++|-.+....+..+|..+..+|.-+|.-.|.+++|.+.
T Consensus 375 ~L~~Wi~~--~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc 452 (579)
T KOG1125|consen 375 MLDKWIRN--KPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC 452 (579)
T ss_pred HHHHHHHh--CccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence 88776552 1111100000 0112222334455566666655566667888899999999999999999999
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 573 IENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 573 ~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
|+.. ..+| |...||-|...++...+.++|+.+|.+++++.|.-......|+-.|...|.++||.+.+-....
T Consensus 453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9988 6678 5789999999999999999999999999999998888889999999999999999998877653
No 105
>PF12854 PPR_1: PPR repeat
Probab=98.47 E-value=2.1e-07 Score=58.79 Aligned_cols=33 Identities=33% Similarity=0.409 Sum_probs=27.4
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHhcCC
Q 003937 175 GLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMR 207 (785)
Q Consensus 175 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 207 (785)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
No 106
>PF12854 PPR_1: PPR repeat
Probab=98.46 E-value=2.5e-07 Score=58.43 Aligned_cols=32 Identities=22% Similarity=0.512 Sum_probs=22.5
Q ss_pred CCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC
Q 003937 545 KIKPTPSHFASMVDLLGRAGLLQEAYNFIENM 576 (785)
Q Consensus 545 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 576 (785)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56677777777777777777777777777666
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.43 E-value=0.00081 Score=80.88 Aligned_cols=324 Identities=14% Similarity=0.040 Sum_probs=190.9
Q ss_pred HHhcCChHHHHHHHHHhCCCC--CchHhHHHHHHHHHhcCCHHHHHHHHHhcCC----C------CHh--HHHHHHHHHH
Q 003937 323 YAKVGGVEIAQKIVEQSGISY--LNVIAFTTLLDGYIKIGDIGPARRIFDSLRD----R------DVV--AWTAMLVGYE 388 (785)
Q Consensus 323 y~~~g~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~----~------~~~--~~~~li~~~~ 388 (785)
....|+++.+...++.+.... .+..........+...|++++|...+....+ . ... ....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 344566666666666542111 1122223334444566777777776654421 1 111 1112223455
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCH----hhHHHHHHHHhccCchHHHHHHHHHHHHh----CCC-CchHHHHHHHHHHHh
Q 003937 389 QNGLNKDAVELFRSMVREGPKPNN----YTLSAMLSVSSSLASLDHGKQIHASALRS----GEA-SSLSVSNALITMYSK 459 (785)
Q Consensus 389 ~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~y~~ 459 (785)
..|++++|...+++....-...+. .....+...+...|+++.|...+...... |.. ........+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 688888888888877653111121 12333444556788888888887777643 111 112344556677788
Q ss_pred cCCHHHHHHHHHhccc------CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHhh
Q 003937 460 AGNINAARRVFNLIHW------RQ----ETVSWTSMIVALAQHGLGEEAIQLFERMLEL--GIKPD--HITYVGVLTACT 525 (785)
Q Consensus 460 ~g~~~~A~~~~~~~~~------~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~--~~t~~~ll~a~~ 525 (785)
.|++++|...+++... .+ ....+..+...+...|++++|...+++.... ...+. ..++..+.....
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 8999999888775421 11 1223444555667779999999988887653 11222 224444556677
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCchhH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHh
Q 003937 526 HGGLVEQGQRYYNMMKNVHKIKPTPSHF-----ASMVDLLGRAGLLQEAYNFIENMPLE--PDV----VAWGSLLSACRV 594 (785)
Q Consensus 526 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~----~~~~~ll~~~~~ 594 (785)
..|++++|...+........-......+ ......+...|+.++|.+++...... ... ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 8899999998888775321111111111 11224455688999999988776311 111 113455566788
Q ss_pred cCCHHHHHHHHHHHHhhCC------CCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 595 HKNLDLGKIAAEKLLLIEP------DNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
.|+.++|...++++..... ....+...++.+|...|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 8999999999999877421 123467778888999999999999999887543
No 108
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.41 E-value=0.00045 Score=72.96 Aligned_cols=85 Identities=14% Similarity=0.155 Sum_probs=40.8
Q ss_pred HHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCCC-----CH--hHHHHHHHHHHHc
Q 003937 319 LISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRDR-----DV--VAWTAMLVGYEQN 390 (785)
Q Consensus 319 li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-----~~--~~~~~li~~~~~~ 390 (785)
+...+...|++++|...+++.....| +...+..+...|...|++++|...++..... +. ..|..+...+...
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~ 199 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLER 199 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHC
Confidence 33445555555555555555444333 3444555555555555555555555544321 11 1233344445555
Q ss_pred CChhHHHHHHHHH
Q 003937 391 GLNKDAVELFRSM 403 (785)
Q Consensus 391 g~~~~A~~~~~~m 403 (785)
|++++|+.+|++.
T Consensus 200 G~~~~A~~~~~~~ 212 (355)
T cd05804 200 GDYEAALAIYDTH 212 (355)
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555554
No 109
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.41 E-value=4.8e-05 Score=86.34 Aligned_cols=231 Identities=16% Similarity=0.195 Sum_probs=163.8
Q ss_pred hCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCC--------CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 003937 339 SGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDR--------DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKP 410 (785)
Q Consensus 339 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 410 (785)
+...+.+...|-..+.-..+.+++++|++++++.... -...|-+++..-...|.-+...++|++..+.
T Consensus 1451 vrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---- 1526 (1710)
T KOG1070|consen 1451 VRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---- 1526 (1710)
T ss_pred HhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh----
Confidence 3344445677888888888888888888888776531 2345666666555556555566666665542
Q ss_pred CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHH
Q 003937 411 NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVA 488 (785)
Q Consensus 411 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~ 488 (785)
.....+|..|...|.+.++.++|-++|+.|-.+ .....|...+..
T Consensus 1527 ---------------------------------cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1527 ---------------------------------CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADF 1573 (1710)
T ss_pred ---------------------------------cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 112334567888899999999999999988543 366789999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCC--HH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCC
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPD--HI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGL 565 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~--~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 565 (785)
+.++++.+.|..++.+.++. -|. .+ ...-.+..-.+.|+.++|+.+|+.... ..+-....|+.++++=.+.|.
T Consensus 1574 Ll~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~--ayPKRtDlW~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1574 LLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLS--AYPKRTDLWSVYIDMEIKHGD 1649 (1710)
T ss_pred HhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh--hCccchhHHHHHHHHHHccCC
Confidence 99999999999999999884 454 33 233334445678999999999998876 344557789999999999999
Q ss_pred HHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 566 LQEAYNFIENM---PLEPD--VVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 566 ~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
.+.++.+|++. .+.|- -..|.-.+.-=..||+-+..+.+-.++.+
T Consensus 1650 ~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1650 IKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 99999999987 34442 34566666666677776666665555544
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.39 E-value=8.4e-06 Score=72.69 Aligned_cols=122 Identities=9% Similarity=-0.009 Sum_probs=85.0
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 003937 500 QLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PL 578 (785)
Q Consensus 500 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 578 (785)
.+|++..+ +.|+. +.....++...|++++|...|+.... --+.+...+..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555555 45554 33455666777788888877777764 12334666777777777788888888877777 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 579 EP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 579 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
.| +...|..+..++...|+.++|...+++++++.|+++..+....++..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 55 46677777777888888888888888888888888777776666553
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.38 E-value=2.6e-05 Score=76.79 Aligned_cols=181 Identities=13% Similarity=0.042 Sum_probs=123.3
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----
Q 003937 445 SSLSVSNALITMYSKAGNINAARRVFNLIHWR-QET----VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI---- 515 (785)
Q Consensus 445 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---- 515 (785)
.....+..+...|.+.|++++|...|+++... |+. ..|..+..+|.+.|++++|+..++++.+ ..|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHH
Confidence 45566677777888889999999888876432 332 3567778888888999999999999887 345432
Q ss_pred HHHHHHHHhhcc--------CCHHHHHHHHHHhhhcCCCCCCch-hHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 003937 516 TYVGVLTACTHG--------GLVEQGQRYYNMMKNVHKIKPTPS-HFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWG 586 (785)
Q Consensus 516 t~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 586 (785)
++..+..++... |+.++|.+.++.+.+. .|+.. .+..+... +...... .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~----~~~~~~~-----------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM----DYLRNRL-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH----HHHHHHH-----------HHHHH
Confidence 344444455543 6778888888877652 34322 22211111 1111100 00112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 587 SLLSACRVHKNLDLGKIAAEKLLLIEPDN---SGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 587 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
.+...+...|+.+.|...++++++..|++ +..+..++.+|.+.|++++|..+++.+..+
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566888999999999999999987754 468899999999999999999999888654
No 112
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.0003 Score=72.54 Aligned_cols=376 Identities=14% Similarity=0.071 Sum_probs=224.2
Q ss_pred HHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCC-cchHHHHHHHHHhcCC
Q 003937 250 AGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDAT-GPVGNALISCYAKVGG 328 (785)
Q Consensus 250 ~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~~~g~ 328 (785)
.+.+..|+++.|+.+|.+.+.-. ++|.+-|+.-..+++..++++.|.+=-...++. .|+ .--|+.+..+..-.|+
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~ 85 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD 85 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence 45677899999999998874322 347888999999999999998887655544443 444 3456777778888899
Q ss_pred hHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHh------cC-CC------CHhHHHHHHHHHHHc----
Q 003937 329 VEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDS------LR-DR------DVVAWTAMLVGYEQN---- 390 (785)
Q Consensus 329 ~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~------~~-~~------~~~~~~~li~~~~~~---- 390 (785)
+++|..-|.+-...+| |...++-+.+++.-. . .+-..|.. +. .| ....|..++..+-++
T Consensus 86 ~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 86 YEEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred HHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 9999999999766666 667788888777111 0 11111110 00 00 011233333322211
Q ss_pred ------CChhHHHHHHHH-----HHHc-------CCCCC----------------------HhhHHHHHHHHhccCchHH
Q 003937 391 ------GLNKDAVELFRS-----MVRE-------GPKPN----------------------NYTLSAMLSVSSSLASLDH 430 (785)
Q Consensus 391 ------g~~~~A~~~~~~-----m~~~-------g~~p~----------------------~~t~~~ll~a~~~~~~~~~ 430 (785)
.+...|.-.+.. +... +..|. ..-...+.++..+..+++.
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 011111111110 0000 11110 0112234445555556666
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-CCh-h-------HHHHHHHHHHHcCChHHHHHH
Q 003937 431 GKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-QET-V-------SWTSMIVALAQHGLGEEAIQL 501 (785)
Q Consensus 431 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~~-~-------~~~~li~~~~~~g~~~~A~~~ 501 (785)
+.+-+...+... .++.-++.....|...|...+....-+...++ ... . ....+..+|.+.++++.|+..
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~ 320 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKY 320 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHH
Confidence 666666665554 44555556666666666666555444332211 011 1 122233456666777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchh-HHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 003937 502 FERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSH-FASMVDLLGRAGLLQEAYNFIENM-PLE 579 (785)
Q Consensus 502 ~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~~-~~~ 579 (785)
|.+.+..-..||..+ +....+++........ -+.|.... .-.=..-+.+.|++.+|.+.+.++ ...
T Consensus 321 ~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 321 YQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 777665444444322 1122333333332221 22333211 111245677899999999999888 445
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 580 P-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 580 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
| |...|..-..+|.+.|++..|..-.+..++++|+....|..=+-++....+|++|.+.+++..+..
T Consensus 389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7 577888888889999999999999999999999888888888888888899999999998876543
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.31 E-value=4.6e-05 Score=71.96 Aligned_cols=118 Identities=8% Similarity=0.002 Sum_probs=92.3
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCC--HHHH
Q 003937 527 GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSA-CRVHKN--LDLG 601 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~--~~~a 601 (785)
.++.+++...++...+ .-+.+...|..+...|...|++++|...+++. .+.| +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5556666666666554 23455777888888888888888888888877 4566 46677777766 366676 5899
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 602 KIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 602 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
..+++++++.+|+++.++..++..+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999999987653
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.30 E-value=7e-05 Score=85.05 Aligned_cols=201 Identities=13% Similarity=0.116 Sum_probs=161.2
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 003937 444 ASSLSVSNALITMYSKAGNINAARRVFNLIHWR-------QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHIT 516 (785)
Q Consensus 444 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 516 (785)
+.+...|-..+......+++++|++++++.... --.-.|.++++.-...|.-+...++|++..+ ..-.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq--ycd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ--YCDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH--hcchHHH
Confidence 445566666777777888999999888876322 1234688888888888888888999999987 2222347
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 003937 517 YVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD---VVAWGSLLSAC 592 (785)
Q Consensus 517 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~ 592 (785)
|..|+..|.+.+..++|.++++.|.++++ -....|..+++.+.+..+-++|.+++.+. ..-|. .....-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88888999999999999999999998666 56677999999999999999999998877 32332 33444455556
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVK 648 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 648 (785)
.++|+.++++.+|+..+.-.|.-...|..++++=.+.|..+.++.+|++....++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999999999999999999999999999999887764
No 115
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.26 E-value=2.2e-05 Score=68.56 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=97.4
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
....-.+...+...|++++|.++|+-. .+.| +..-|-.|...|...|++++|+..|.++..++|+|+.++..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 444455667778999999999999988 5667 46678889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHH
Q 003937 628 SCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIK 690 (785)
Q Consensus 628 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 690 (785)
..|+.+.|.+-|+...... ..+|+..++..+++...+.+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~-----------------------~~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC-----------------------GEVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh-----------------------ccChhHHHHHHHHHHHHHHhh
Confidence 9999999999999886531 134666666666766666554
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.25 E-value=2.1e-05 Score=70.15 Aligned_cols=99 Identities=10% Similarity=-0.045 Sum_probs=87.9
Q ss_pred CCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 003937 546 IKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALC 623 (785)
Q Consensus 546 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 623 (785)
+.|+ .+..+...+...|++++|.+.|+.. ...| +...|..+...+...|++++|...++++++++|+++.++..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3444 3556788899999999999999987 5566 5778999999999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC
Q 003937 624 NLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 624 ~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
.++...|++++|...++...+..
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999987643
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.20 E-value=4.6e-05 Score=81.14 Aligned_cols=189 Identities=19% Similarity=0.187 Sum_probs=138.8
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003937 442 GEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVL 521 (785)
Q Consensus 442 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 521 (785)
+++|--..-..+.+.+..+|-..+|..+|+++ ..|--.|.+|+..|+..+|..+..+-.+ -+||+.-|..+.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 45566666677888999999999999999865 4577788899999999999999888887 578889999999
Q ss_pred HHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 003937 522 TACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLD 599 (785)
Q Consensus 522 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~ 599 (785)
+.....-.+++|+++.+...... -..+.....+.++++++.+.++.. .+.| ...+|-.+..+..+.++.+
T Consensus 465 Dv~~d~s~yEkawElsn~~sarA--------~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISARA--------QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHHH--------HHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhH
Confidence 98888888899998887664320 011112223456777777766654 4444 3557777666667777777
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 600 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
.|...|.....++|++...|+.+.-+|.+.|+-.+|...+++..+..
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence 77777777777777777777777777777777777777777776554
No 118
>PLN02789 farnesyltranstransferase
Probab=98.19 E-value=0.00053 Score=69.71 Aligned_cols=225 Identities=12% Similarity=0.102 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003937 379 AWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYS 458 (785)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 458 (785)
+++.+-..+...++.++|+.++.++++ +.|+..|. ++.--..+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~--lnP~~yta----------------------------------W~~R~~iL~ 82 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIR--LNPGNYTV----------------------------------WHFRRLCLE 82 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHH--HCchhHHH----------------------------------HHHHHHHHH
Confidence 444444555566677777777777665 34544432 122222223
Q ss_pred hcC-CHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCCh--HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHH
Q 003937 459 KAG-NINAARRVFNLIHWR--QETVSWTSMIVALAQHGLG--EEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQ 532 (785)
Q Consensus 459 ~~g-~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 532 (785)
+.| .+++++..++++... .+...|+-..-.+.+.|+. ++++.+++++.+ ..|+ ..+|.....++.+.|.+++
T Consensus 83 ~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHH
Confidence 334 456777776665321 2445566554444455542 567777777776 4554 3577777777777788888
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHhhc---CC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC----CHH
Q 003937 533 GQRYYNMMKNVHKIKPTPSHFASMVDLLGRA---GL----LQEAYNFIENM-PLEP-DVVAWGSLLSACRVHK----NLD 599 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~----~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g----~~~ 599 (785)
+++.++++.+. -.-+...|+.....+.+. |. .+++.++..++ ...| |...|+.+...+...+ +..
T Consensus 161 eL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~ 238 (320)
T PLN02789 161 ELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDP 238 (320)
T ss_pred HHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccch
Confidence 88888887752 123344555544444433 22 24566666444 5566 5778998888887743 446
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcC------------------ChHHHHHHHHHHH
Q 003937 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSCG------------------KWEDAANIRKSMK 643 (785)
Q Consensus 600 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~a~~~~~~m~ 643 (785)
+|...+.++.+.+|.++.+...|+++|+... ..++|.++++.+.
T Consensus 239 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 239 EVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred hHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence 6888899988889989999999999998743 2366777777773
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.00019 Score=67.44 Aligned_cols=117 Identities=13% Similarity=0.070 Sum_probs=55.1
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKN 597 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 597 (785)
.+....+.|++.+|...+.+... .-++|...|+.+.-.|-+.|++++|..-|.+. .+.| ++...+.|...+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCC
Confidence 44444444444444444444432 33344444444444444445544444444333 2333 23344445555555555
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHH
Q 003937 598 LDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANI 638 (785)
Q Consensus 598 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 638 (785)
.+.|+.++.......+.|+..-..|.-+....|++++|..+
T Consensus 184 ~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 184 LEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555555444444444444555555555555555443
No 120
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.17 E-value=0.00016 Score=81.10 Aligned_cols=139 Identities=11% Similarity=0.074 Sum_probs=112.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASM 556 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 556 (785)
++..+-.|.....+.|++++|+.+++...+ +.||.. ....+..++.+.+.+++|....++... .-+-+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 577788888888999999999999999998 789876 677778889999999999999988875 223346667778
Q ss_pred HHHHhhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 003937 557 VDLLGRAGLLQEAYNFIENMP-LEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYS 620 (785)
Q Consensus 557 i~~~~~~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 620 (785)
...+.+.|++++|.++|++.- ..|+ ..+|.++..++...|+.++|...|+++++...+-...|.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 888999999999999999883 3454 678888888899999999999999999987643434433
No 121
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.16 E-value=3.5e-06 Score=54.23 Aligned_cols=35 Identities=46% Similarity=0.764 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH 514 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 514 (785)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.13 E-value=0.00017 Score=68.11 Aligned_cols=154 Identities=12% Similarity=0.115 Sum_probs=112.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHH
Q 003937 454 ITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQ 532 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 532 (785)
+-+|.+.|+++......+.+..... .|...++.++++..+++..+ ..|+ ...|..+...+...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~---------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH---------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc---------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHH
Confidence 4567888888776555443322100 12235667888888888877 3554 4578888889999999999
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHH-HhhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003937 533 GQRYYNMMKNVHKIKPTPSHFASMVDL-LGRAGL--LQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEK 607 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 607 (785)
|...+++..+. -+.+...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|+..+++
T Consensus 92 A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999988752 23356677777776 467777 58999999988 5566 467888888889999999999999999
Q ss_pred HHhhCCCCchhHH
Q 003937 608 LLLIEPDNSGAYS 620 (785)
Q Consensus 608 ~~~~~p~~~~~~~ 620 (785)
++++.|.+..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9999887665443
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.11 E-value=0.00019 Score=67.50 Aligned_cols=135 Identities=17% Similarity=0.110 Sum_probs=112.7
Q ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 003937 510 IKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM--PLEPDVVAWGS 587 (785)
Q Consensus 510 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ 587 (785)
..|+......+-.++...|+-+....+...... ....|......++....+.|++.+|...|.+. +-++|...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 456543335566677888888888888776543 33455566677899999999999999999998 34557899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 588 LLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 588 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
+..+|-+.|+++.|...+.+++++.|.++..++.|+-.|.-.|+.++|..++......+
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999887554
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.10 E-value=0.0011 Score=68.00 Aligned_cols=119 Identities=15% Similarity=0.162 Sum_probs=86.1
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~ 600 (785)
.....|.+++|+..++.+.+ ..+.|+.......+.+.+.++.++|.+.++++ ...|+ ...+-++..++.+.|+..+
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 34556777788888777765 33444555566677788888888888887777 45665 5566677777788888888
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
|+..++....-+|+|+..|..|+.+|...|+..++...+.++.
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 8888888888888888888888888888777777777666553
No 125
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.10 E-value=0.00025 Score=69.87 Aligned_cols=182 Identities=14% Similarity=0.033 Sum_probs=126.0
Q ss_pred CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCC-C-chHHHHHHHHHHHhcCCHHHHHHHHHhcccC-CCh-h---HHH
Q 003937 411 NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEA-S-SLSVSNALITMYSKAGNINAARRVFNLIHWR-QET-V---SWT 483 (785)
Q Consensus 411 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~~-~---~~~ 483 (785)
....+-.....+...|+++.|...+..+.+.... + ....+..+...|.+.|++++|...++++... |+. . +|.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3445666777888999999999999999876432 1 1245677889999999999999999987532 322 2 455
Q ss_pred HHHHHHHHc--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHH
Q 003937 484 SMIVALAQH--------GLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFA 554 (785)
Q Consensus 484 ~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 554 (785)
.+..++... |+.++|++.|+++.. ..|+.. ....+..... . ..... ....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~------~~~~~---------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----L------RNRLA---------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----H------HHHHH---------HHHH
Confidence 556666654 778999999999988 466653 2222211100 0 00000 0122
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 555 SMVDLLGRAGLLQEAYNFIENM----PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
.+.+.|.+.|+.++|...+++. +-.| ....|..+..++...|+.++|...++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4667788999999999888887 2233 256888899999999999999998888776555
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.06 E-value=6.7e-06 Score=52.86 Aligned_cols=35 Identities=29% Similarity=0.612 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 003937 378 VAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNN 412 (785)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 412 (785)
++||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 127
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.05 E-value=0.038 Score=61.18 Aligned_cols=167 Identities=17% Similarity=0.181 Sum_probs=88.1
Q ss_pred HHHHHHHhccCchHHHHH---HHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC---CChhHHHHHHHHH
Q 003937 416 SAMLSVSSSLASLDHGKQ---IHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR---QETVSWTSMIVAL 489 (785)
Q Consensus 416 ~~ll~a~~~~~~~~~a~~---~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---p~~~~~~~li~~~ 489 (785)
+.++..|-+.++.....+ +++.-... -+.|..+--.||..|+--|-+..|.++|+.+..+ -|...|- +..-+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 355667777777653332 22222222 2334455567888999889999999999988655 1333222 22344
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHH---HHHhhhcCCCCCCchhHHHHHHHHhhcC
Q 003937 490 AQHGLGEEAIQLFERMLELGIKPDH--ITYVGVLTACTHGGLVEQGQRY---YNMMKNVHKIKPTPSHFASMVDLLGRAG 564 (785)
Q Consensus 490 ~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~---~~~m~~~~~~~p~~~~~~~li~~~~~~g 564 (785)
...|++..+...+++...- --+. .|-..+..|| +.|.+.+..+. -+++.. .....-..+-+..++.+...+
T Consensus 518 ~t~g~~~~~s~~~~~~lkf--y~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~-S~q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLKF--YDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMH-SLQKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HhcccchhHHHHHHHHHHH--HhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Confidence 5566777666666655431 1111 1222222233 23444333332 222321 011112333456778888888
Q ss_pred CHHHHHHHHHhCCCCC--CHHHHHHH
Q 003937 565 LLQEAYNFIENMPLEP--DVVAWGSL 588 (785)
Q Consensus 565 ~~~~A~~~~~~~~~~p--~~~~~~~l 588 (785)
+.++-...+..|.++| |..-|..|
T Consensus 594 ~~~q~~~~~~~~~l~~~e~~I~w~~L 619 (932)
T KOG2053|consen 594 RGTQLLKLLESMKLPPSEDRIQWVSL 619 (932)
T ss_pred cHHHHHHHHhccccCcchhhcccccc
Confidence 8888888888886444 33344443
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.04 E-value=0.0013 Score=70.43 Aligned_cols=210 Identities=14% Similarity=0.159 Sum_probs=157.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCch
Q 003937 349 FTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASL 428 (785)
Q Consensus 349 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 428 (785)
-..+...+...|-...|..+|++. ..|.-.|..|+..|+..+|..+..+-.+ -+||...|..+.+......-+
T Consensus 401 q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHH
Confidence 345566777778888888888874 5677788889999988888888877766 468888888888877777777
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc-ccC-CChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003937 429 DHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI-HWR-QETVSWTSMIVALAQHGLGEEAIQLFERML 506 (785)
Q Consensus 429 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 506 (785)
++|.++.+..... .-..+.......++++++.+.|+.- ... -...+|-....+..+.++.+.|.+.|..-.
T Consensus 474 EkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 474 EKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 8888777665332 1111222223468888888888753 322 256678888888888899999999998888
Q ss_pred HCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC
Q 003937 507 ELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM 576 (785)
Q Consensus 507 ~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 576 (785)
. ..||.. .|+.+-.++.+.|.-.+|...+++..+ .. .-+...|...+-...+.|.+++|.+.+.++
T Consensus 547 t--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK-cn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 547 T--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK-CN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred h--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh-cC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 7 688775 899998999999999999999988876 44 344455666667778889999998888877
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.01 E-value=0.0016 Score=66.86 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHH
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVL-TACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVD 558 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 558 (785)
.+--..-.+...|++++|+..++.+.. -.||...|..+. ..+...++.++|.+.++.+.. ..|+ ....-.+.+
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 333334445667899999999999888 477777665554 578899999999999998875 4566 455567788
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHH
Q 003937 559 LLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAA 636 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 636 (785)
+|.+.|+.++|...++.. .-.| |+..|..|..+|...|+..++... ....|.-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 999999999999999887 2234 688999999999999987766654 445688899999999
Q ss_pred HHHHHHHhCC
Q 003937 637 NIRKSMKYVG 646 (785)
Q Consensus 637 ~~~~~m~~~g 646 (785)
......+++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9999887653
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.98 E-value=0.0011 Score=74.49 Aligned_cols=145 Identities=11% Similarity=0.050 Sum_probs=117.7
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc-cCCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHH
Q 003937 442 GEASSLSVSNALITMYSKAGNINAARRVFNLIH-WRQE-TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYV 518 (785)
Q Consensus 442 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~ 518 (785)
....+...+-.|.+.....|.+++|..+++... ..|| ...+..+...+.+.+++++|+..+++... ..|+.. ...
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~ 158 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREIL 158 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHH
Confidence 455668888889999999999999999999875 3354 55688889999999999999999999998 578775 556
Q ss_pred HHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 003937 519 GVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM--PLEPDVVAWGSLLS 590 (785)
Q Consensus 519 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~ 590 (785)
.+..++.+.|.+++|..+|+++.. ..+-+...+..+...+-+.|+.++|...|++. ...|.+..|+.++.
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 666688999999999999999985 22334678888999999999999999999988 23455566666554
No 131
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.97 E-value=1.3e-05 Score=51.08 Aligned_cols=34 Identities=35% Similarity=0.620 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 003937 479 TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP 512 (785)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 512 (785)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578999999999999999999999999888887
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.95 E-value=9.9e-05 Score=65.37 Aligned_cols=96 Identities=17% Similarity=0.224 Sum_probs=77.1
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
......+...+.+.|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344556667777888888888888776 3345 56677778778888888999999999988888888888888999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 003937 628 SCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 628 ~~g~~~~a~~~~~~m~~~ 645 (785)
..|++++|...++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999988887664
No 133
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.95 E-value=0.036 Score=57.72 Aligned_cols=211 Identities=12% Similarity=0.080 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC---CHHHHHHHHHhcccCC---ChhHHHHHHHHHHHcCChHHHHHHH
Q 003937 429 DHGKQIHASALRSGEASSLSVSNALITMYSKAG---NINAARRVFNLIHWRQ---ETVSWTSMIVALAQHGLGEEAIQLF 502 (785)
Q Consensus 429 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g---~~~~A~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~ 502 (785)
+++..+++..+..-...+..+|..+.+---..- ..+.....+++....+ -..+|-.++..-.+..-...|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455555555555433344444444443211111 2344444555443221 2346777888777777789999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC---CC
Q 003937 503 ERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM---PL 578 (785)
Q Consensus 503 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~ 578 (785)
.+..+.+..+. ....++++.-++ .++.+-|.++|+.=.+.+| .++.--.+.++-+...++-..|..+|++. .+
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99999988884 446777776554 5788999999987766443 44455678889999999999999999998 24
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC----chhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 579 EPD--VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN----SGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 579 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
.|| ...|..+|.-=..-|++....++-++....-|.+ ...-..+++.|.-.+++..-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 554 4689999999999999999999999888765522 123445677777777777666666555
No 134
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.94 E-value=0.0024 Score=72.62 Aligned_cols=149 Identities=12% Similarity=0.100 Sum_probs=75.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 003937 449 VSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTH 526 (785)
Q Consensus 449 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 526 (785)
.+-.|..+|-+.|+.++|..+++++.. ..|+...|.+...|+.. +.++|++++.+.... +..
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~ 181 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK 181 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence 344555666666666666666665431 12455556666666665 666666666555442 333
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003937 527 GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAE 606 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 606 (785)
..++..+.++|.++.. ..+.+...+--+.... ....+...-+.+|--|-..|...++++.+..+++
T Consensus 182 ~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki------------~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 182 KKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKV------------LGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred hhcchHHHHHHHHHHh--cCcccchHHHHHHHHH------------HhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 4455555555555543 1111222211111111 1111112223344444555566666666777777
Q ss_pred HHHhhCCCCchhHHHHHHHHH
Q 003937 607 KLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 607 ~~~~~~p~~~~~~~~l~~~~~ 627 (785)
.+++.+|.|..+..-++..|.
T Consensus 248 ~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCcchhhHHHHHHHHH
Confidence 777766666666666666554
No 135
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.93 E-value=1.7e-05 Score=50.56 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=28.8
Q ss_pred cHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCC
Q 003937 111 VSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLP 143 (785)
Q Consensus 111 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 143 (785)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888999999999999999999998888877
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.91 E-value=0.00018 Score=74.57 Aligned_cols=121 Identities=14% Similarity=0.114 Sum_probs=90.7
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 003937 518 VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH 595 (785)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 595 (785)
.+++..+...++++.|..+|+++.+. .|+ ....|+..+...++-.+|.+++.+. ...| |...+......|...
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34455556666777777777776642 243 3344666666667777777777666 2234 555666666668899
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 596 KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
++.+.|..+++++.++.|++..+|..|+.+|.+.|++++|.-.++.+-
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999998873
No 137
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.0044 Score=58.45 Aligned_cols=85 Identities=16% Similarity=0.201 Sum_probs=36.5
Q ss_pred CHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc-CCHHHHHHHH
Q 003937 529 LVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM--PLEPDVVAWGSLLSACRVH-KNLDLGKIAA 605 (785)
Q Consensus 529 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~ 605 (785)
.+.+|.-+|++|.. ...|+..+.+.+.......|++++|..++++. .-..++.+...++-.-... .+.+--.+..
T Consensus 188 k~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 188 KIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred hhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 34445555555543 23444444444444444455555555555444 1111233333333222222 2333344455
Q ss_pred HHHHhhCCCC
Q 003937 606 EKLLLIEPDN 615 (785)
Q Consensus 606 ~~~~~~~p~~ 615 (785)
.++....|..
T Consensus 266 ~QLk~~~p~h 275 (299)
T KOG3081|consen 266 SQLKLSHPEH 275 (299)
T ss_pred HHHHhcCCcc
Confidence 5555555543
No 138
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.87 E-value=0.032 Score=54.62 Aligned_cols=307 Identities=11% Similarity=0.045 Sum_probs=168.4
Q ss_pred CchhHHHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHH---HHHHccCChhHHHHHHhhCCCCCccHHHHHH---HH
Q 003937 46 LSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTIL---SAYAKQGRLDLACEVFNLMPNRDSVSWTTII---VT 119 (785)
Q Consensus 46 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li---~~ 119 (785)
.++.-.--|-..+...|.+.+|..-|....+.|...|-++- ..|...|+-..|+.-|++..+.-+.-+.+-| ..
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 44445555667777788888888888888776666555543 3567777777777766666542222222222 34
Q ss_pred HHhCCChhHHHHHHHHhHHCCCCCC--hhhH------------HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHH
Q 003937 120 YNEIGRFKNAIRMFVEMVQDQVLPT--QFTV------------TSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNS 185 (785)
Q Consensus 120 ~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~------------~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 185 (785)
+.+.|.+++|..-|+..++....-+ ...+ ...+..+...||...+.....++++.. +.|+..+..
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~ 194 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA 194 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence 5678888999888888876532111 1111 222344556677777777777777665 556777777
Q ss_pred HHHHHHhCCChHHHHHHHhc---CCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHH
Q 003937 186 LLNMYAKVGDEMMAKAVFDG---MRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEAL 262 (785)
Q Consensus 186 li~~~~~~g~~~~A~~~~~~---m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 262 (785)
-..+|...|++..|..=++. +...++.+.--+-..+...|+.+.++...++..+-|+..=.. |.--....+..
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C----f~~YKklkKv~ 270 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC----FPFYKKLKKVV 270 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH----HHHHHHHHHHH
Confidence 77777777777777654443 234445555555555666666666655555543322211000 00000001111
Q ss_pred HHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCC---cchHHHHHHHHHhcCChHHHHHHHHHh
Q 003937 263 GMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDAT---GPVGNALISCYAKVGGVEIAQKIVEQS 339 (785)
Q Consensus 263 ~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~ 339 (785)
+.++.| ......+++..+..-.+.+++...... ...+..+-..|...|++.+|++...+.
T Consensus 271 K~les~-----------------e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 271 KSLESA-----------------EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred HHHHHH-----------------HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 111111 112233444444444444444432211 122334445566666777777777766
Q ss_pred CCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC
Q 003937 340 GISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD 374 (785)
Q Consensus 340 ~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~ 374 (785)
....| |+.++---..+|.-...++.|+.-|+...+
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 66555 466666666667666677777776666554
No 139
>PLN02789 farnesyltranstransferase
Probab=97.84 E-value=0.0023 Score=65.06 Aligned_cols=186 Identities=11% Similarity=0.076 Sum_probs=133.8
Q ss_pred HHHHhcCCHHHHHHHHHhccc-CC-ChhHHHHHHHHHHHcC-ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCC-
Q 003937 455 TMYSKAGNINAARRVFNLIHW-RQ-ETVSWTSMIVALAQHG-LGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGL- 529 (785)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~- 529 (785)
..+...+..++|+.+.+++.. .| +...|+..-..+...| ++++++..++++.+. .|+. .+|+.-...+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence 334556788888888887643 23 4456777666666777 579999999999984 5554 356655545555565
Q ss_pred -HHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----HH
Q 003937 530 -VEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH---KN----LD 599 (785)
Q Consensus 530 -~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~----~~ 599 (785)
.+++..+++++.+ .-+-+...|+....++.+.|++++|++.++++ ...| |...|+.....+... |. .+
T Consensus 123 ~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e 200 (320)
T PLN02789 123 AANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRD 200 (320)
T ss_pred hhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHH
Confidence 3677888888875 22345677888888888999999999999998 4445 577888777665544 22 24
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhc----CChHHHHHHHHHHHh
Q 003937 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSC----GKWEDAANIRKSMKY 644 (785)
Q Consensus 600 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~a~~~~~~m~~ 644 (785)
.......++++++|+|..+|.-+..+|... ++..+|.+......+
T Consensus 201 ~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 201 SELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 677888899999999999999999999873 445667777666443
No 140
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.84 E-value=0.0025 Score=72.49 Aligned_cols=172 Identities=11% Similarity=0.086 Sum_probs=113.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhCCCCCc-hHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcC
Q 003937 313 GPVGNALISCYAKVGGVEIAQKIVEQSGISYLN-VIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNG 391 (785)
Q Consensus 313 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 391 (785)
...+..|+..|...+++++|.++.+......|+ ...|-.+...+.+.++.+++..+ .++..+....
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 345667888888888888888888876666663 34444445566666665555544 2333333344
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Q 003937 392 LNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFN 471 (785)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 471 (785)
++.-...+...|... .-+...+..+..+|.+.|+.+++..+++.+++.. +.|+.+.|-+...|+.. ++++|.+++.
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 443333444444442 2233456677777888888888888888888877 66777888888888888 8888888877
Q ss_pred hcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 003937 472 LIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI 515 (785)
Q Consensus 472 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 515 (785)
+...+ |...+++.++.+++.++.. ..|+.+
T Consensus 174 KAV~~------------~i~~kq~~~~~e~W~k~~~--~~~~d~ 203 (906)
T PRK14720 174 KAIYR------------FIKKKQYVGIEEIWSKLVH--YNSDDF 203 (906)
T ss_pred HHHHH------------HHhhhcchHHHHHHHHHHh--cCcccc
Confidence 65433 5556677777777777777 455544
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.78 E-value=0.00058 Score=60.42 Aligned_cols=113 Identities=9% Similarity=0.081 Sum_probs=83.1
Q ss_pred HHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 003937 501 LFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PL 578 (785)
Q Consensus 501 ~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 578 (785)
+|++... ..|+.. ....+...+...|++++|.+.++.+... -+.+...+..+...|.+.|++++|.+.+++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4455555 456543 4555666777888888888888887652 2345667777888888888888888888776 34
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 003937 579 EP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 579 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 617 (785)
.| +...|..+...+...|+.+.|...++++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 45 4667777788888999999999999999999986654
No 142
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.78 E-value=0.11 Score=57.79 Aligned_cols=155 Identities=12% Similarity=0.021 Sum_probs=93.1
Q ss_pred HHHHHHHHHHcCChH---HHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHH
Q 003937 482 WTSMIVALAQHGLGE---EAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMV 557 (785)
Q Consensus 482 ~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 557 (785)
-|.|+..+.+.++.. +|+-+++.-.. ..| |..+-..++..|+-.|.+..|.+.|+.+.- ..+..|..-|- +.
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdI-K~IQ~DTlgh~-~~ 514 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDI-KNIQTDTLGHL-IF 514 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcch-HHhhhccchHH-HH
Confidence 467888888888754 45556665555 234 445667788899999999999999998854 45665544332 33
Q ss_pred HHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CchhHHHHHHHHHh
Q 003937 558 DLLGRAGLLQEAYNFIENMP-----LEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD----NSGAYSALCNLYSS 628 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~~-----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~ 628 (785)
..+...|++..+...+...- -..+..- +|....++|.+..-.++...=..+.-. -..+-...++..+.
T Consensus 515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~e---yI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~ 591 (932)
T KOG2053|consen 515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPE---YIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCN 591 (932)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhhhhhhHH---HHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566677776666655540 0111222 223334556655444433222222111 11234466777888
Q ss_pred cCChHHHHHHHHHHH
Q 003937 629 CGKWEDAANIRKSMK 643 (785)
Q Consensus 629 ~g~~~~a~~~~~~m~ 643 (785)
.++.++-...+..|+
T Consensus 592 ~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 592 ADRGTQLLKLLESMK 606 (932)
T ss_pred CCcHHHHHHHHhccc
Confidence 888888888888886
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.0075 Score=56.53 Aligned_cols=168 Identities=18% Similarity=0.216 Sum_probs=119.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccC-CC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 003937 450 SNALITMYSKAGNINAARRVFNLIHWR-QE---TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACT 525 (785)
Q Consensus 450 ~~~li~~y~~~g~~~~A~~~~~~~~~~-p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 525 (785)
+..++-+...+|+.+.|...++++..+ |. +.-..+| -+-..|++++|+++++..++.+ +.|.+++.-=+...-
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 344555666788899999988887644 22 2222222 2455788999999999999865 445567776666666
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh---cCCHHH
Q 003937 526 HGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRV---HKNLDL 600 (785)
Q Consensus 526 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~---~g~~~~ 600 (785)
..|.--+|++-+....+ .+..|.+.|.-+.++|...|++++|.-.++++ -+.|- ...+..+...+.- ..+.+.
T Consensus 132 a~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 67777788877777765 46778899999999999999999999999888 34564 4444555555332 337788
Q ss_pred HHHHHHHHHhhCCCCchhHHHH
Q 003937 601 GKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l 622 (785)
|.+.+++++++.|.+......+
T Consensus 210 arkyy~~alkl~~~~~ral~GI 231 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRALFGI 231 (289)
T ss_pred HHHHHHHHHHhChHhHHHHHHH
Confidence 9999999999998655444433
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.76 E-value=0.00094 Score=69.28 Aligned_cols=127 Identities=13% Similarity=0.088 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhc
Q 003937 448 SVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTH 526 (785)
Q Consensus 448 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~ 526 (785)
....+|+..+...++++.|..+|+++..+ ++..+..|+..+...++..+|++++++..+. .| |...+..-...|..
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~-~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER-DPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc-CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHh
Confidence 34456677777788999999999998766 4455556778888888888999999998873 44 44455555566888
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 003937 527 GGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENMPLEP 580 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 580 (785)
.++++.|..+.+++.+ ..|+ ..+|..|+..|.+.|++++|+-.++.+|+.|
T Consensus 247 k~~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKKYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCCHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 8999999999988875 3454 6689999999999999999999999887554
No 145
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.73 E-value=3.8e-05 Score=47.64 Aligned_cols=31 Identities=39% Similarity=0.630 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGI 510 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 510 (785)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788888888888888888888888888764
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=5.4e-05 Score=46.91 Aligned_cols=31 Identities=29% Similarity=0.681 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHhCCChhHHHHHHHHhHHCCC
Q 003937 111 VSWTTIIVTYNEIGRFKNAIRMFVEMVQDQV 141 (785)
Q Consensus 111 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 141 (785)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4688888888888888888888888887664
No 147
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.029 Score=53.12 Aligned_cols=91 Identities=21% Similarity=0.208 Sum_probs=63.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 003937 451 NALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGG 528 (785)
Q Consensus 451 ~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 528 (785)
++.+......+.+.+|.-+|+++..+ |+..+.|-+..++...|++++|..++++.+... .-++.|...++-+-...|
T Consensus 177 ~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 177 QAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLG 255 (299)
T ss_pred HHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhC
Confidence 34444445566788899999998764 677777888888888999999999999888753 334556666666555566
Q ss_pred CHHH-HHHHHHHhhh
Q 003937 529 LVEQ-GQRYYNMMKN 542 (785)
Q Consensus 529 ~~~~-a~~~~~~m~~ 542 (785)
...+ -.+...+++.
T Consensus 256 kd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 256 KDAEVTERNLSQLKL 270 (299)
T ss_pred CChHHHHHHHHHHHh
Confidence 5544 3455556654
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.60 E-value=0.00064 Score=55.37 Aligned_cols=92 Identities=27% Similarity=0.327 Sum_probs=75.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 003937 553 FASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCG 630 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 630 (785)
+..+...+...|++++|.+.+++. ...|+ ...|..+...+...|+++.|...++++....|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667778888999999888876 33443 4667777777888899999999999999999988888899999999999
Q ss_pred ChHHHHHHHHHHHh
Q 003937 631 KWEDAANIRKSMKY 644 (785)
Q Consensus 631 ~~~~a~~~~~~m~~ 644 (785)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998887754
No 149
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.58 E-value=0.12 Score=55.46 Aligned_cols=334 Identities=15% Similarity=0.104 Sum_probs=174.8
Q ss_pred CCChhHHHHHHHHHHhCCChHHHHHHHhcCCC-CCcchHHHHHHHH----------HhcCChHHHHHHhhhcCCCCcccH
Q 003937 177 SGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRL-KNVSSWNVVVSLH----------IHSGRLDLARAQFDQMIERDVVTW 245 (785)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~li~~~----------~~~g~~~~A~~l~~~~~~~~~~~~ 245 (785)
.|.+..|..|...-...-.++-|+..|-+... +++...-.|-..+ .--|++++|++++-.|..+|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhhh---
Confidence 57777787777766666667777777755542 1221111111111 123889999999988877774
Q ss_pred HHHHHHHhhCCCchHHHHHHHHhhhcCCCCCC----hhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHH
Q 003937 246 NSMIAGYSQNGYDFEALGMFANMLKDSSLKPD----KFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALIS 321 (785)
Q Consensus 246 ~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 321 (785)
.|..+.+.|++-...++++.- |-..| ...+..+-..++....++.|.+.+..--.. ..+++
T Consensus 766 --Aielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~~e 830 (1189)
T KOG2041|consen 766 --AIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQIE 830 (1189)
T ss_pred --hHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhHHH
Confidence 466777888888888777542 21122 245666666666666677666665542211 23455
Q ss_pred HHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHH
Q 003937 322 CYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFR 401 (785)
Q Consensus 322 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 401 (785)
+|.+..++++-+.+-+.+.+. ....-.+.+++...|.-++|...|-+-..|.. .+..|...+++.+|.++-+
T Consensus 831 cly~le~f~~LE~la~~Lpe~---s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 831 CLYRLELFGELEVLARTLPED---SELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHHhhhhHHHHHHhcCcc---cchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHHHHHHHHHHHHHHHH
Confidence 555555555555544444433 33444566677777777777776665555432 2345566666777776655
Q ss_pred HHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC--CCh
Q 003937 402 SMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR--QET 479 (785)
Q Consensus 402 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~ 479 (785)
... -|...|+ +.- .+.+++... + + -.-|.++.+.|..-+|-+++.+|.++ ..-
T Consensus 903 ~~~----l~qv~tl---iak--------~aaqll~~~---~------~-~eaIe~~Rka~~~~daarll~qmae~e~~K~ 957 (1189)
T KOG2041|consen 903 RFQ----LPQVQTL---IAK--------QAAQLLADA---N------H-MEAIEKDRKAGRHLDAARLLSQMAEREQEKY 957 (1189)
T ss_pred hcc----chhHHHH---HHH--------HHHHHHhhc---c------h-HHHHHHhhhcccchhHHHHHHHHhHHHhhcc
Confidence 432 2333322 211 111111111 0 0 12356778888888888888777533 001
Q ss_pred hHHHHH-----HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHH
Q 003937 480 VSWTSM-----IVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFA 554 (785)
Q Consensus 480 ~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 554 (785)
+.|-.+ +.++. ..+..++++-.++....|...|... +..+|...++-++.+..-. -....|+-
T Consensus 958 ~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr----gAEAyHFm 1025 (1189)
T KOG2041|consen 958 VPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR----GAEAYHFM 1025 (1189)
T ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh----hHHHHHHH
Confidence 111111 11111 1234455555555555554444332 1223333344343332221 12234444
Q ss_pred HHHHHHhhcCCHHHHHHHH
Q 003937 555 SMVDLLGRAGLLQEAYNFI 573 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~ 573 (785)
.|..--...|.++.|+..-
T Consensus 1026 ilAQrql~eg~v~~Al~Ta 1044 (1189)
T KOG2041|consen 1026 ILAQRQLFEGRVKDALQTA 1044 (1189)
T ss_pred HHHHHHHHhchHHHHHHHH
Confidence 5555556677888777643
No 150
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.57 E-value=0.00024 Score=54.14 Aligned_cols=64 Identities=22% Similarity=0.243 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 003937 581 DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCG-KWEDAANIRKSMKY 644 (785)
Q Consensus 581 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 644 (785)
++.+|..+...+...|++++|+..++++++++|+++..+..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999 79999999988754
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.53 E-value=0.00012 Score=58.29 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=55.6
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHH
Q 003937 563 AGLLQEAYNFIENM-PLEP---DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANI 638 (785)
Q Consensus 563 ~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 638 (785)
.|++++|+.+++++ ...| +...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777766 2223 445566677778888888888888888 666776666777778888888999998888
Q ss_pred HHH
Q 003937 639 RKS 641 (785)
Q Consensus 639 ~~~ 641 (785)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
No 152
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.0067 Score=56.84 Aligned_cols=183 Identities=15% Similarity=0.158 Sum_probs=133.9
Q ss_pred cCCHHHHHHHHHhccc-------CCChh-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHhhccCCH
Q 003937 460 AGNINAARRVFNLIHW-------RQETV-SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGV-LTACTHGGLV 530 (785)
Q Consensus 460 ~g~~~~A~~~~~~~~~-------~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l-l~a~~~~g~~ 530 (785)
..+.++..+++.++.. .|+.. .|..++-+....|+.+-|...++++... + |.+.-...+ .--+...|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhch
Confidence 4578888888887742 13333 2444555667788899999999998875 3 554321111 1124567889
Q ss_pred HHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003937 531 EQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM--PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKL 608 (785)
Q Consensus 531 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 608 (785)
++|.++++.+.++. +.|..++---+.+.-..|+--+|.+-+.+. .+..|...|.-|...|...|+++.|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999998743 445666666666677777777887766555 34568999999999999999999999999999
Q ss_pred HhhCCCCchhHHHHHHHHHhcC---ChHHHHHHHHHHHhCC
Q 003937 609 LLIEPDNSGAYSALCNLYSSCG---KWEDAANIRKSMKYVG 646 (785)
Q Consensus 609 ~~~~p~~~~~~~~l~~~~~~~g---~~~~a~~~~~~m~~~g 646 (785)
+-+.|-++..+..++..+.-.| +.+-|.+++.+..+..
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987776 4556777777776543
No 153
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.47 E-value=0.0016 Score=55.98 Aligned_cols=93 Identities=16% Similarity=0.022 Sum_probs=52.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHH
Q 003937 553 FASMVDLLGRAGLLQEAYNFIENM-PLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN---SGAYSALCN 624 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 624 (785)
+-.++..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|...++.+....|++ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334445555566666666665555 12222 2234445555666666666666666666665543 344566666
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 003937 625 LYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 625 ~~~~~g~~~~a~~~~~~m~~~ 645 (785)
++.+.|++++|.+.++.+.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666544
No 154
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.44 E-value=0.0053 Score=66.90 Aligned_cols=138 Identities=20% Similarity=0.147 Sum_probs=72.1
Q ss_pred CChhHHHHHHHHHHH--cC---ChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCc
Q 003937 477 QETVSWTSMIVALAQ--HG---LGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTP 550 (785)
Q Consensus 477 p~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 550 (785)
.|...|...+.+... .+ ...+|+.+|++..+ ..||.. .+..+..++... .+..|..
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~~~ 396 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQPLD 396 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCCcc
Confidence 477788888877443 22 26689999999988 678764 444433222111 0111110
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM---P-LEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY 626 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~---~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 626 (785)
. +.+..+.+..++. + ...+...|.++.-.....|++++|...++++++++| +...|..++.+|
T Consensus 397 ~------------~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~ 463 (517)
T PRK10153 397 E------------KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVY 463 (517)
T ss_pred H------------HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 0 0111222222221 1 112334454444444455666666666666666666 455666666666
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 003937 627 SSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 627 ~~~g~~~~a~~~~~~m~~~ 645 (785)
...|+.++|...+++....
T Consensus 464 ~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 464 ELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 6666666666666665443
No 155
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.41 E-value=0.0041 Score=55.61 Aligned_cols=52 Identities=13% Similarity=0.110 Sum_probs=25.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 003937 589 LSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKS 641 (785)
Q Consensus 589 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 641 (785)
...+...|++++|+..++... -.+-.+..+..++++|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 333444455555555443321 1111334455556666666666666665553
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.37 E-value=0.0011 Score=69.03 Aligned_cols=103 Identities=16% Similarity=0.078 Sum_probs=77.4
Q ss_pred HHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 003937 521 LTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNL 598 (785)
Q Consensus 521 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 598 (785)
...+...|++++|...|+++.+. -+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 44566778888888888888752 2334666777788888888888888888877 4556 466777777788888888
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 599 DLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 599 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
+.|+..++++++++|+++.....+..+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 888888888888888877665555443
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.37 E-value=0.0025 Score=54.75 Aligned_cols=102 Identities=11% Similarity=0.014 Sum_probs=57.6
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 003937 518 VGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD----VVAWGSLLSA 591 (785)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~ 591 (785)
..+...+...|++++|...|..+.+...-.| ....+..+...+.+.|++++|.+.++.. ...|+ ..++..+...
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444555555555555555543211101 1223444556666666666666666655 22232 3456666666
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 003937 592 CRVHKNLDLGKIAAEKLLLIEPDNSGAY 619 (785)
Q Consensus 592 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 619 (785)
+...|+.+.|...++++++..|+++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 7778888888888888888888665543
No 158
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.36 E-value=0.0051 Score=55.03 Aligned_cols=82 Identities=15% Similarity=0.112 Sum_probs=39.1
Q ss_pred HHHHhcCChHHHHHHHHHhCCCCCc----hHhHHHHHHHHHhcCCHHHHHHHHHhcCCC--CHhHHHHHHHHHHHcCChh
Q 003937 321 SCYAKVGGVEIAQKIVEQSGISYLN----VIAFTTLLDGYIKIGDIGPARRIFDSLRDR--DVVAWTAMLVGYEQNGLNK 394 (785)
Q Consensus 321 ~~y~~~g~~~~A~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~ 394 (785)
..+...|++++|...|+......++ ......+...+...|++++|...++....+ ....+......|.+.|+.+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHH
Confidence 3444455555555555544333221 123334455555555555555555554332 2233344445555566666
Q ss_pred HHHHHHHH
Q 003937 395 DAVELFRS 402 (785)
Q Consensus 395 ~A~~~~~~ 402 (785)
+|...|+.
T Consensus 136 ~A~~~y~~ 143 (145)
T PF09976_consen 136 EARAAYQK 143 (145)
T ss_pred HHHHHHHH
Confidence 66555543
No 159
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.34 E-value=0.00062 Score=51.07 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=45.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 588 LLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 588 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+...+...|++++|+..++++++..|+++..+..++.++...|++++|..+++++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445677888888888888888888888888888888888888888888888877643
No 160
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.30 E-value=0.0008 Score=64.70 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=81.9
Q ss_pred HHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 003937 522 TACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNL 598 (785)
Q Consensus 522 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~ 598 (785)
.-..+.+++.+|+..|.+.++ +.|+ ...|..=..+|.+.|.++.|.+-.+.. .+.|. ..+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 346778999999999999885 4555 555666678999999999999877776 67786 56999999999999999
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 599 DLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 599 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
++|++.|+++++++|++......|-.+
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHH
Confidence 999999999999999887555555443
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.28 E-value=0.0026 Score=58.64 Aligned_cols=93 Identities=13% Similarity=-0.091 Sum_probs=73.4
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCN 624 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 624 (785)
...+..+...+...|++++|...|++. .+.|+ ..+|..+...+...|+.++|+..+++++.+.|....++..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566667777788888888888776 23332 3478888888999999999999999999999988888888888
Q ss_pred HHH-------hcCChHHHHHHHHHH
Q 003937 625 LYS-------SCGKWEDAANIRKSM 642 (785)
Q Consensus 625 ~~~-------~~g~~~~a~~~~~~m 642 (785)
+|. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 888888777666654
No 162
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0022 Score=61.76 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=81.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcC
Q 003937 487 VALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAG 564 (785)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g 564 (785)
.-+.+.+++++|+..|.+.++ +.|+ .+-|..-..+|++.|.++.|++-.+.... +.|. ...|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccC
Confidence 346788999999999999999 6765 56677778899999999999998887764 4555 668899999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 003937 565 LLQEAYNFIENM-PLEPDVVAWGSLLSA 591 (785)
Q Consensus 565 ~~~~A~~~~~~~-~~~p~~~~~~~ll~~ 591 (785)
++++|.+.|++. .+.|+..+|-+=+..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 999999999887 789987777554443
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.24 E-value=0.0037 Score=57.84 Aligned_cols=80 Identities=16% Similarity=0.099 Sum_probs=56.6
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 003937 552 HFASMVDLLGRAGLLQEAYNFIENM-PLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY 626 (785)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 626 (785)
.+..+...|.+.|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|++...+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445555566666666666666655 22222 346777777788888888888888888888888888888888888
Q ss_pred HhcCC
Q 003937 627 SSCGK 631 (785)
Q Consensus 627 ~~~g~ 631 (785)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88776
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.21 E-value=0.0077 Score=55.74 Aligned_cols=130 Identities=17% Similarity=0.252 Sum_probs=86.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD--HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFA 554 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~ 554 (785)
....+..+...+...|++++|+..|++..+....|+ ...+..+...+.+.|++++|...+.+..+ ..| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344577777778888999999999988887433332 24677777788888888888888887765 233 344555
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 555 SMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
.+...|...|+...+..-++.. ...++.|...++++...+|++ |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666777767665554332221 112567888888888888865 5555555555554
No 165
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.19 E-value=0.01 Score=59.59 Aligned_cols=133 Identities=12% Similarity=0.162 Sum_probs=96.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTA-CTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD 558 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 558 (785)
..|..++....+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467778888888778888888888887532 2233344433333 33356677799999988873 5566777888899
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 003937 559 LLGRAGLLQEAYNFIENM-PLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 615 (785)
.+.+.|+.+.|..+|++. ..-|. ...|...+.-=.++|+++....+.+++.+.-|++
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999887 22233 3589999999999999999999999999988853
No 166
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.12 E-value=0.4 Score=48.85 Aligned_cols=121 Identities=11% Similarity=0.145 Sum_probs=90.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCc
Q 003937 348 AFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLAS 427 (785)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 427 (785)
+.+..+.-+...|+...|.++-.+..-|+-..|-..|.+++..+++++-..+... +-.++.|..++.+|.+.|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4555566667777999999999998889999999999999999999877665332 2245889999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHH
Q 003937 428 LDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIV 487 (785)
Q Consensus 428 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~ 487 (785)
..+|..+...+ + +..-+.+|.++|++.+|.+.--+.+ |......+..
T Consensus 253 ~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~ 299 (319)
T PF04840_consen 253 KKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILK 299 (319)
T ss_pred HHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHH
Confidence 88888776652 1 2567889999999999877644433 4444444333
No 167
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.11 E-value=0.0065 Score=63.40 Aligned_cols=103 Identities=15% Similarity=0.145 Sum_probs=82.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhh
Q 003937 485 MIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGR 562 (785)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~ 562 (785)
....+...|++++|++.|++.++ ..|+. ..|..+..++...|++++|...++.+.+ +.| +...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHH
Confidence 34557788999999999999998 56654 5788888899999999999999999976 344 46678888899999
Q ss_pred cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 003937 563 AGLLQEAYNFIENM-PLEPDVVAWGSLLSAC 592 (785)
Q Consensus 563 ~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~ 592 (785)
.|++++|...|++. .+.|+......++..|
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999987 5677655555555444
No 168
>PRK15331 chaperone protein SicA; Provisional
Probab=97.11 E-value=0.01 Score=52.44 Aligned_cols=88 Identities=11% Similarity=-0.030 Sum_probs=76.0
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH
Q 003937 557 VDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 557 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 634 (785)
..-+...|++++|..+|.-+ -..| +..-|..|...|...++++.|...|..+..++++|+..+...+..|...|+.++
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHH
Confidence 34456789999999999887 2334 455678888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 003937 635 AANIRKSMKY 644 (785)
Q Consensus 635 a~~~~~~m~~ 644 (785)
|+..|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 9999998865
No 169
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.10 E-value=0.41 Score=48.76 Aligned_cols=120 Identities=19% Similarity=0.203 Sum_probs=84.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHH
Q 003937 452 ALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVE 531 (785)
Q Consensus 452 ~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~ 531 (785)
.-|.-+...|+...|.++-.+.+.. |..-|-..+.+|+..+++++-.++.. . +-.++-|..++.+|...|...
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fkv~-dkrfw~lki~aLa~~~~w~eL~~fa~----s--kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFKVP-DKRFWWLKIKALAENKDWDELEKFAK----S--KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcCCc-HHHHHHHHHHHHHhcCCHHHHHHHHh----C--CCCCCChHHHHHHHHHCCCHH
Confidence 3345556678888888888777664 88888889999999998887665432 1 223477888888888888888
Q ss_pred HHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 003937 532 QGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSAC 592 (785)
Q Consensus 532 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~ 592 (785)
+|..+...+. +..-+.+|.++|++.+|.+.--+.+ |...+..+..-|
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 8888876521 2456788888999888877655543 444444444433
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.09 E-value=0.00085 Score=50.87 Aligned_cols=53 Identities=23% Similarity=0.252 Sum_probs=44.6
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...|++++|+..++++++.+|++......++.+|.+.|++++|..+++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35788899999999999999998888999999999999999999988877543
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.08 E-value=0.0022 Score=47.99 Aligned_cols=61 Identities=26% Similarity=0.279 Sum_probs=50.0
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 556 MVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 556 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778899999999999888 55674 66888888889999999999999999999999764
No 172
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.06 E-value=0.015 Score=60.77 Aligned_cols=121 Identities=13% Similarity=0.052 Sum_probs=95.9
Q ss_pred CCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc---cCCChhH
Q 003937 407 GPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRS--GEASSLSVSNALITMYSKAGNINAARRVFNLIH---WRQETVS 481 (785)
Q Consensus 407 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~p~~~~ 481 (785)
+...+...+..+++.+....+++.+..++-..... ....-..+..++|..|.+.|..+++..+++.=. .=||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 44567778888889988888888888888777765 222233444689999999999999999887533 3379999
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 003937 482 WTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHG 527 (785)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 527 (785)
+|.|++.+.+.|++..|.++..+|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988888888888887777777665
No 173
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.04 E-value=0.49 Score=48.51 Aligned_cols=88 Identities=10% Similarity=0.190 Sum_probs=65.0
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCCCh---hhHHHHHHHHHccCChhHHHHHHhhCCC--
Q 003937 33 KLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTL---CSWNTILSAYAKQGRLDLACEVFNLMPN-- 107 (785)
Q Consensus 33 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~f~~m~~-- 107 (785)
.++-+.+... +.|...|-.|++-|...|..++.++++++|..|-. ..|...+++-....++.....+|.+-..
T Consensus 29 lrLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 29 LRLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 3444444432 56788899999999999999999999999988754 3788888877777788888888877554
Q ss_pred CCccHHHHHHHHHHh
Q 003937 108 RDSVSWTTIIVTYNE 122 (785)
Q Consensus 108 ~~~~~~~~li~~~~~ 122 (785)
-++..|..-+.---+
T Consensus 107 l~ldLW~lYl~YIRr 121 (660)
T COG5107 107 LNLDLWMLYLEYIRR 121 (660)
T ss_pred ccHhHHHHHHHHHHh
Confidence 366778777765444
No 174
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.03 E-value=0.68 Score=50.06 Aligned_cols=186 Identities=11% Similarity=0.098 Sum_probs=117.9
Q ss_pred CCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCC-----CcccHHHHHHHHhhCCCchHHHHHHHH
Q 003937 193 VGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIER-----DVVTWNSMIAGYSQNGYDFEALGMFAN 267 (785)
Q Consensus 193 ~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~ 267 (785)
.|++++|++++-+|..+|. -|..+.+.|++-...++++.--.. -...|+.+-..+.....|++|.+.|..
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4889999999999887775 356667778888877777654221 235688888888888888888888765
Q ss_pred hhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchH
Q 003937 268 MLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVI 347 (785)
Q Consensus 268 ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 347 (785)
- .. ....+.++.+...++.-+.+ ...++-+....-.+.+|+.+.|.-++|.+.|-+.....
T Consensus 822 ~-~~---------~e~~~ecly~le~f~~LE~l-----a~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk---- 882 (1189)
T KOG2041|consen 822 C-GD---------TENQIECLYRLELFGELEVL-----ARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK---- 882 (1189)
T ss_pred c-cc---------hHhHHHHHHHHHhhhhHHHH-----HHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH----
Confidence 4 11 12234444444444333222 22346666777788888888888888887776544332
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHH--------------HHHHHHHcCChhHHHHHHHHHHH
Q 003937 348 AFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTA--------------MLVGYEQNGLNKDAVELFRSMVR 405 (785)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~--------------li~~~~~~g~~~~A~~~~~~m~~ 405 (785)
.-+..+....++.+|.++-++..-|.+.+.-+ -|..+.+.|+.-+|-+++.+|.+
T Consensus 883 ---aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 883 ---AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 23445556667888888777766554433211 23345556666666677766654
No 175
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.018 Score=57.87 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=70.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEPDV-----VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
+...+.|++.+|.+.+.+. .+.|+. ..|........+.|+.++|+.-.+++++++|.-...|..-++++...++
T Consensus 257 N~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 257 NDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred hhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 4456889999999988877 555543 3455555556788999999999999999999777888888888999999
Q ss_pred hHHHHHHHHHHHhC
Q 003937 632 WEDAANIRKSMKYV 645 (785)
Q Consensus 632 ~~~a~~~~~~m~~~ 645 (785)
|++|.+-+++..+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887643
No 176
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.02 E-value=0.00053 Score=43.19 Aligned_cols=33 Identities=36% Similarity=0.662 Sum_probs=30.8
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCChHHHH
Q 003937 604 AAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAA 636 (785)
Q Consensus 604 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 636 (785)
+++++++++|+|+.+|..|+.+|...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 368899999999999999999999999999986
No 177
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.00 E-value=0.0069 Score=49.02 Aligned_cols=89 Identities=20% Similarity=0.216 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHH
Q 003937 482 WTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLL 560 (785)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 560 (785)
|..+...+...|++++|+..|++..+. .|+. ..+..+...+...|++++|...++...+. .+.+...+..+...+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 78 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHH
Confidence 444555566666666666666666553 3332 34444455555555555555555554431 111222333444444
Q ss_pred hhcCCHHHHHHHHH
Q 003937 561 GRAGLLQEAYNFIE 574 (785)
Q Consensus 561 ~~~g~~~~A~~~~~ 574 (785)
...|+.++|.+.+.
T Consensus 79 ~~~~~~~~a~~~~~ 92 (100)
T cd00189 79 YKLGKYEEALEAYE 92 (100)
T ss_pred HHHHhHHHHHHHHH
Confidence 44444444444443
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.98 E-value=0.1 Score=46.58 Aligned_cols=133 Identities=11% Similarity=0.037 Sum_probs=93.8
Q ss_pred CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 003937 510 IKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP---DVVAW 585 (785)
Q Consensus 510 ~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~ 585 (785)
.-|+..--..|..+....|+..+|...|++... .-+..|....-.+.++....++..+|...+++. ...| ++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 456665556677777788888888888877764 223345556666677777778888887777776 1122 22334
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 586 GSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 586 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
..+...+...|..+.|+..|+.++..-| ++..-......+.++|+.+++..-+....+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4566678889999999999999999888 666666677888999999888776555543
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.95 E-value=0.0026 Score=48.94 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=49.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 590 SACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 590 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
..+.+.++++.|..+++++++++|+++..+...+.+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457788899999999999999999999999999999999999999999998887543
No 180
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.88 E-value=0.015 Score=47.33 Aligned_cols=80 Identities=16% Similarity=0.097 Sum_probs=67.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhHHCCC-CCChhhHHHHHHHHhccC--------ChhHHHHHHHHHHHhCCCCChhHH
Q 003937 113 WTTIIVTYNEIGRFKNAIRMFVEMVQDQV-LPTQFTVTSVLASCTALG--------DLSAGKKVHSFVVKTGLSGCVNVT 183 (785)
Q Consensus 113 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~~~~~g~~~~~~~~ 183 (785)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666677999999999999999999 899999999999987553 234577889999999999999999
Q ss_pred HHHHHHHHh
Q 003937 184 NSLLNMYAK 192 (785)
Q Consensus 184 ~~li~~~~~ 192 (785)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.87 E-value=0.044 Score=50.46 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHH
Q 003937 479 TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD--HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFAS 555 (785)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 555 (785)
...|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++...+. .|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~---~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER---NPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCcHHHHHH
Confidence 44566677777778888888888888776422221 236667777777788888888877776642 232 333444
Q ss_pred HHHHHh
Q 003937 556 MVDLLG 561 (785)
Q Consensus 556 li~~~~ 561 (785)
+...|.
T Consensus 112 la~i~~ 117 (168)
T CHL00033 112 MAVICH 117 (168)
T ss_pred HHHHHH
Confidence 444444
No 182
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.81 E-value=0.77 Score=47.32 Aligned_cols=73 Identities=18% Similarity=0.136 Sum_probs=60.3
Q ss_pred HHHHHHhCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 569 AYNFIENMPLEPD----VVAWGSLLSA--CRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 569 A~~~~~~~~~~p~----~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
-+.++++.++.|- ...-|.|..| +..+|++.++.....=+.++.| ++.+|..++-.+....+++||..++..+
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 3456666666653 3456777777 5789999999999888899999 9999999999999999999999999865
No 183
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.72 E-value=0.055 Score=54.42 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=42.6
Q ss_pred CchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-CCh----hHHHHHHHHHHHcCChHHHHH
Q 003937 426 ASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-QET----VSWTSMIVALAQHGLGEEAIQ 500 (785)
Q Consensus 426 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~~----~~~~~li~~~~~~g~~~~A~~ 500 (785)
++.+.|..+|+...+. ++.+...+...++.+.+.|+.+.|+.+|++.... |.. ..|...+.-=.+.|+.+.+.+
T Consensus 50 ~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 50 KDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp S-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3344455555554443 3444555556666666666666666666655322 222 256666666666666666666
Q ss_pred HHHHHHH
Q 003937 501 LFERMLE 507 (785)
Q Consensus 501 ~~~~m~~ 507 (785)
+.+++.+
T Consensus 129 v~~R~~~ 135 (280)
T PF05843_consen 129 VEKRAEE 135 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 184
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.72 E-value=0.019 Score=52.94 Aligned_cols=98 Identities=17% Similarity=0.288 Sum_probs=74.5
Q ss_pred HHHHHhc--ccCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc------------
Q 003937 467 RRVFNLI--HWRQETVSWTSMIVALAQH-----GLGEEAIQLFERMLELGIKPDHITYVGVLTACTHG------------ 527 (785)
Q Consensus 467 ~~~~~~~--~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~------------ 527 (785)
...|+.. ..+ |..+|..++..|.+. |..+=....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k-~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F 112 (228)
T PF06239_consen 34 EELFERAPGQAK-DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF 112 (228)
T ss_pred HHHHHHHhhccc-cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence 3445554 334 777788888877654 56666777788899999999999999999886542
Q ss_pred ----CCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCH
Q 003937 528 ----GLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLL 566 (785)
Q Consensus 528 ----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (785)
.+.+-|++++++|.. +|+-||.+++..|++.+++.+..
T Consensus 113 ~hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 113 MHYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred ccCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccHH
Confidence 123568899999986 89999999999999999887753
No 185
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.70 E-value=0.51 Score=52.27 Aligned_cols=174 Identities=17% Similarity=0.127 Sum_probs=110.8
Q ss_pred HHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHH----HHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhc
Q 003937 82 WNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIV----TYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTA 157 (785)
Q Consensus 82 ~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~----~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 157 (785)
.-.-|..+.+...++.|..+-..-.. |...-..+.. -+-+.|++++|...|-+-... +.| +.+++-+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 34456667777777888777654432 2222233333 345679999999888776532 233 235555555
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChHHHHHHhh
Q 003937 158 LGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVS--SWNVVVSLHIHSGRLDLARAQFD 235 (785)
Q Consensus 158 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~~~~li~~~~~~g~~~~A~~l~~ 235 (785)
......--.+++.+.+.|+. +...-+.|+.+|.+.++.+.-.+..+... .+.. -....+..+.+.+-+++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 55566666777888888854 44556789999999999999888887776 3322 24455666666666666666655
Q ss_pred hcCCCCcccHHHHHHHHhhCCCchHHHHHHHHh
Q 003937 236 QMIERDVVTWNSMIAGYSQNGYDFEALGMFANM 268 (785)
Q Consensus 236 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 268 (785)
+... +......+ +-..|++++|++.+..+
T Consensus 488 k~~~-he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred Hhcc-CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 4422 33333333 33567899999998887
No 186
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.67 E-value=0.025 Score=46.14 Aligned_cols=81 Identities=14% Similarity=0.051 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCHhhHHHHHHHHhccC--------chHHHHHHHHHHHHhCCCCchHH
Q 003937 379 AWTAMLVGYEQNGLNKDAVELFRSMVREGP-KPNNYTLSAMLSVSSSLA--------SLDHGKQIHASALRSGEASSLSV 449 (785)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~ 449 (785)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.+|.+.++.. ++-....+++.++..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334556667777999999999999999999 899999999998876543 24456677888888888888888
Q ss_pred HHHHHHHHHh
Q 003937 450 SNALITMYSK 459 (785)
Q Consensus 450 ~~~li~~y~~ 459 (785)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 8888776654
No 187
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.65 E-value=0.0043 Score=47.12 Aligned_cols=64 Identities=20% Similarity=0.252 Sum_probs=52.2
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCC
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHK-NLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p 613 (785)
...|..+...+...|++++|+..|++. ...|+ ...|..+..++...| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777778888888888888888877 45564 668888888889998 79999999999999887
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.64 E-value=0.057 Score=59.03 Aligned_cols=49 Identities=12% Similarity=0.007 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHhh--CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 598 LDLGKIAAEKLLLI--EPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 598 ~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
.+.+...+++...+ +|.++..|..++-.+...|++++|...+++..+..
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 34556666666553 67778889999888888999999999999998765
No 189
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0084 Score=58.27 Aligned_cols=103 Identities=15% Similarity=0.035 Sum_probs=82.5
Q ss_pred CCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH-hc--CCHHHHHHHHHHHHhhCCCCchhHHH
Q 003937 547 KPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACR-VH--KNLDLGKIAAEKLLLIEPDNSGAYSA 621 (785)
Q Consensus 547 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~-~~--g~~~~a~~~~~~~~~~~p~~~~~~~~ 621 (785)
+-|...|--|...|.+.|+.+.|..-|.+. .+.| ++..+..+..++. +. ....++..++++++.++|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 445778888888888888888888888777 4444 4556666666632 22 24578999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 003937 622 LCNLYSSCGKWEDAANIRKSMKYVGVKK 649 (785)
Q Consensus 622 l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 649 (785)
|...+...|++.+|...|+.|.+....-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999876543
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.59 E-value=0.027 Score=58.89 Aligned_cols=121 Identities=12% Similarity=0.149 Sum_probs=94.3
Q ss_pred CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCC-----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 003937 442 GEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQE-----TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHIT 516 (785)
Q Consensus 442 g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 516 (785)
+.+.+......+++......+++++..++-+....|+ ..|..++|..|...|..+++++++..=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 4455555566777777777788889998887764432 23456999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc
Q 003937 517 YVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA 563 (785)
Q Consensus 517 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 563 (785)
|+.+++.+.+.|++..|.++...|.. .....+..++.--+..+.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~l-Qe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMML-QEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHH-hhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988875 44445555555444444444
No 191
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.59 E-value=0.0048 Score=49.05 Aligned_cols=80 Identities=23% Similarity=0.339 Sum_probs=49.1
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHH
Q 003937 492 HGLGEEAIQLFERMLELGI-KPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEA 569 (785)
Q Consensus 492 ~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 569 (785)
.|+++.|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. .+ ..|. ....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5777888888888877432 12334455567777888888888888776 21 2222 23333446677777777777
Q ss_pred HHHHHh
Q 003937 570 YNFIEN 575 (785)
Q Consensus 570 ~~~~~~ 575 (785)
.+.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 777764
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.58 E-value=0.99 Score=45.54 Aligned_cols=244 Identities=15% Similarity=0.149 Sum_probs=161.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHH
Q 003937 388 EQNGLNKDAVELFRSMVREGPKPNN--YTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINA 465 (785)
Q Consensus 388 ~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 465 (785)
.-.|++++|.+-|+.|... |.. ..+..+.-...+.|+-+.++++-+..-..- +.-.....++++..+..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHH
Confidence 3467888888888887642 221 123333334456677777776665554332 2224556788888999999999
Q ss_pred HHHHHHhcccC----CChhH--HHHHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHH
Q 003937 466 ARRVFNLIHWR----QETVS--WTSMIVALA---QHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQR 535 (785)
Q Consensus 466 A~~~~~~~~~~----p~~~~--~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~ 535 (785)
|+++.+.-... +++.- -..|+.+-+ -..+...|...-.+..+ +.||.+ .-.....++.+.|++.++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhh
Confidence 99999865321 24332 223333322 13356667766666665 788876 44455568999999999999
Q ss_pred HHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHH----HHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 536 YYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAY----NFIENMPLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 536 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~----~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
+++.+-+ ..|.+..+... .+.|.|+..... +-++. ++|| ..+-.+...+-...|++..|..-.+.+..
T Consensus 285 ilE~aWK---~ePHP~ia~lY--~~ar~gdta~dRlkRa~~L~s--lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r 357 (531)
T COG3898 285 ILETAWK---AEPHPDIALLY--VRARSGDTALDRLKRAKKLES--LKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR 357 (531)
T ss_pred HHHHHHh---cCCChHHHHHH--HHhcCCCcHHHHHHHHHHHHh--cCccchHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 9998875 45666655433 345666543221 12233 4565 55667777788899999999999999999
Q ss_pred hCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 003937 611 IEPDNSGAYSALCNLYSSC-GKWEDAANIRKSMKYV 645 (785)
Q Consensus 611 ~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 645 (785)
..| ....|..|.++-... |+-.++..++.+..+.
T Consensus 358 ~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 358 EAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 999 677899999987555 9999998888776543
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.56 E-value=0.18 Score=53.71 Aligned_cols=167 Identities=17% Similarity=0.246 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 003937 395 DAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIH 474 (785)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 474 (785)
+-+.-+++|++.|-.|+.... ...|+-.|++.+|.++|.. .|.+ |.-+.||.....++.|.+++..-.
T Consensus 618 ~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~g~ 685 (1081)
T KOG1538|consen 618 ELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGSGD 685 (1081)
T ss_pred HHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhcCC
Confidence 344556788888988987654 3456777888888887743 3432 344556666666666666654321
Q ss_pred cC--C----ChhHH-------HHHHHHHHHcCChHHHHHHHH------HHHHCCCCC---CHHHHHHHHHHhhccCCHHH
Q 003937 475 WR--Q----ETVSW-------TSMIVALAQHGLGEEAIQLFE------RMLELGIKP---DHITYVGVLTACTHGGLVEQ 532 (785)
Q Consensus 475 ~~--p----~~~~~-------~~li~~~~~~g~~~~A~~~~~------~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~ 532 (785)
.+ . ....| .+-...+...|+.++|+.+.- -+.+-+-+. +..+...+..-+.+...+.-
T Consensus 686 ~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred hHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccch
Confidence 00 0 01111 223344556677777766532 122222222 23355555555566677778
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHH
Q 003937 533 GQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMP-LEPDVV 583 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~ 583 (785)
|-++|.+|-. ...++++....|++++|..+-++.| +.||+.
T Consensus 766 AaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy 807 (1081)
T KOG1538|consen 766 AAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVY 807 (1081)
T ss_pred HHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccccc
Confidence 8888887753 3568889999999999999999985 555543
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.53 E-value=0.024 Score=56.76 Aligned_cols=128 Identities=13% Similarity=0.029 Sum_probs=91.5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhh---hcCCCCC-CchhHHHHHHHHhhcCCHHHHHHHHHhC-------CC-CCCHH
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMK---NVHKIKP-TPSHFASMVDLLGRAGLLQEAYNFIENM-------PL-EPDVV 583 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~-~p~~~ 583 (785)
.|..|...|.-.|+++.|+..++.-. +.+|-.. ....++.+.+.+.-.|+++.|.+.++.. +- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 56667777777889999988776432 2234322 2445677888888889999998887764 21 12345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh----C--CCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLI----E--PDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
+.-+|.+.|....+++.|+..+.+-+.+ + -....++.+|+++|...|.-++|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6667888888888899999888776553 1 1244588999999999999999998877654
No 195
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.52 E-value=0.027 Score=52.06 Aligned_cols=99 Identities=12% Similarity=0.200 Sum_probs=73.6
Q ss_pred HHHHHHHhc--CCCCHhHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc-----------
Q 003937 364 PARRIFDSL--RDRDVVAWTAMLVGYEQN-----GLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSL----------- 425 (785)
Q Consensus 364 ~A~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~----------- 425 (785)
.-...|+.. ..++-.+|..+|..|.+. |..+-....++.|.+-|+.-|..+|+.||+.+=+.
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 345566665 457788888888888754 66777777888899999999999999999887542
Q ss_pred -----CchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC
Q 003937 426 -----ASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGN 462 (785)
Q Consensus 426 -----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 462 (785)
.+-+.|..++++|...|+-||..++..|++.+++.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2345677788888888888888888888877766543
No 196
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.50 E-value=0.37 Score=47.13 Aligned_cols=170 Identities=17% Similarity=0.089 Sum_probs=107.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccC-CChh-H---HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhh
Q 003937 453 LITMYSKAGNINAARRVFNLIHWR-QETV-S---WTSMIVALAQHGLGEEAIQLFERMLELGIKPDH--ITYVGVLTACT 525 (785)
Q Consensus 453 li~~y~~~g~~~~A~~~~~~~~~~-p~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~ 525 (785)
....+.+.|++++|.+.|+.+... |+.. . .-.++.+|.+.+++++|+..|++..+ ..|+. +-+...+.+.+
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~--~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCcCCCchHHHHHHHHHh
Confidence 344456789999999999988643 3332 2 23455678889999999999999988 45544 34444444433
Q ss_pred c--cC---------------CH---HHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 003937 526 H--GG---------------LV---EQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAW 585 (785)
Q Consensus 526 ~--~g---------------~~---~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~ 585 (785)
. .+ +. .+|...|+.+. +.|=.+.-..+|...+..+. +...-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~---~~la~ 176 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLK---DRLAK 176 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHH---HHHHH
Confidence 2 11 11 22333344333 33333334455555444431 11111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 586 --GSLLSACRVHKNLDLGKIAAEKLLLIEPDNS---GAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 586 --~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
-.+..-|.+.|.+.-|..-++.+++--|+.+ .+...+..+|.+.|..++|..+.+...
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1334447888999999999999999877644 567788999999999999999887654
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.48 E-value=0.0045 Score=46.81 Aligned_cols=53 Identities=26% Similarity=0.281 Sum_probs=24.6
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 003937 563 AGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 563 ~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 615 (785)
.|++++|.++|+++ ...| +...+..+...|...|++++|...++++...+|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 44444555444444 2223 33444444445555555555555555555555543
No 198
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.47 E-value=0.42 Score=46.78 Aligned_cols=55 Identities=13% Similarity=0.059 Sum_probs=32.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 003937 486 IVALAQHGLGEEAIQLFERMLEL--GIKPDHITYVGVLTACTHGGLVEQGQRYYNMM 540 (785)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 540 (785)
..-|.+.|.+..|+.-|+.+.+. +-+........+..++...|..++|..+...+
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34466677777777777777663 11112234555666666677777666665544
No 199
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.45 E-value=0.043 Score=49.08 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCccC
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK-----YVGVKKT 650 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~ 650 (785)
....++..+...|+++.|...+++++..+|-|...|..++.+|...|+..+|.++++.+. +.|+.|.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 456677778899999999999999999999999999999999999999999999999985 4577654
No 200
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.15 Score=48.19 Aligned_cols=138 Identities=15% Similarity=0.140 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCc-----hHHHHHH
Q 003937 379 AWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASS-----LSVSNAL 453 (785)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~l 453 (785)
.-+.++..+...|.+.-.+..+++.++...+-+....+.+.+.-.+.|+.+.+...++...+..-..+ ..+....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34556666666777777888888888766556666677777777788888888888887776533333 3333333
Q ss_pred HHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003937 454 ITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYV 518 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 518 (785)
...|.-++++.+|...|+++... .|++.-|.-.-+..-.|+..+|++..+.|.+ ..|...+-+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~e 323 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHE 323 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhh
Confidence 34456677888888888887644 2555556555555566888899999999988 456554433
No 201
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.43 E-value=0.068 Score=47.72 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=90.0
Q ss_pred cCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--Cch
Q 003937 543 VHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM---PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD--NSG 617 (785)
Q Consensus 543 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~ 617 (785)
+..+.|++..--.|...+.+.|+..||...|++. .+--|......+..+....++...|...++.+.+..|. .+.
T Consensus 82 ~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 82 ELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred HHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 3456788888888999999999999999999988 34557888888888889999999999999999998875 567
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 618 AYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 618 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+...+...|...|++++|+..|+...+.
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 7889999999999999999999998765
No 202
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.42 E-value=0.067 Score=47.19 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=70.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhcc
Q 003937 451 NALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHG 527 (785)
Q Consensus 451 ~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~ 527 (785)
-++...+...|++++|.++|+.+.. .-+..-|-.|..++-..|++++|+..|..... +.||. ..+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHc
Confidence 3455556778999999999987642 22566788888888889999999999999888 45654 5777888888899
Q ss_pred CCHHHHHHHHHHhhh
Q 003937 528 GLVEQGQRYYNMMKN 542 (785)
Q Consensus 528 g~~~~a~~~~~~m~~ 542 (785)
|+.+.|++.|+....
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999988775
No 203
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.40 E-value=0.015 Score=60.20 Aligned_cols=63 Identities=13% Similarity=-0.033 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 582 VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG---AYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 582 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
...|+.+..+|...|++++|...++++++++|++.. +|..++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555442 255555555555555555555555544
No 204
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.35 E-value=2.2 Score=46.93 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=66.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHH
Q 003937 454 ITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 533 (785)
+.-+...|+..+|.++-.+.+.. |-..|---+.+++..+++++-+++-+.+. + ++-|.-...+|.+.|+.++|
T Consensus 691 v~~li~~g~~k~a~ql~~~Fkip-dKr~~wLk~~aLa~~~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA 763 (829)
T KOG2280|consen 691 VTTLILIGQNKRAEQLKSDFKIP-DKRLWWLKLTALADIKKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGNKDEA 763 (829)
T ss_pred HHHHHHccchHHHHHHHHhcCCc-chhhHHHHHHHHHhhhhHHHHHHHHhccC-----C-CCCchhHHHHHHhcccHHHH
Confidence 33445567777777777766555 66666666777777777766555444332 1 45566667777777777777
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHh
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIEN 575 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 575 (785)
.+++.+.. |. .-.+.+|.+.|++.+|.++--+
T Consensus 764 ~KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 764 KKYIPRVG---GL-------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hhhhhccC---Ch-------HHHHHHHHHhccHHHHHHHHHH
Confidence 77765432 11 1456777777777777665443
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.34 E-value=0.05 Score=46.15 Aligned_cols=86 Identities=20% Similarity=0.025 Sum_probs=56.5
Q ss_pred HHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHh
Q 003937 557 VDLLGRAGLLQEAYNFIENM---PLEPD--VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD---NSGAYSALCNLYSS 628 (785)
Q Consensus 557 i~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 628 (785)
..++-..|+.++|..++++. +.... ...+-.+.+.++..|+.++|..++++...-.|+ +......+.-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 34555666777777766665 22221 224455666677888888888888888777676 45555666677788
Q ss_pred cCChHHHHHHHHHH
Q 003937 629 CGKWEDAANIRKSM 642 (785)
Q Consensus 629 ~g~~~~a~~~~~~m 642 (785)
.|+.++|.+.+-..
T Consensus 88 ~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 88 LGRPKEALEWLLEA 101 (120)
T ss_pred CCCHHHHHHHHHHH
Confidence 88888887766543
No 206
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.34 E-value=0.52 Score=47.55 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=42.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhc-CCHHHHHHHHHhcCC-----CC----HhHHHHHHHHH
Q 003937 318 ALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKI-GDIGPARRIFDSLRD-----RD----VVAWTAMLVGY 387 (785)
Q Consensus 318 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~ 387 (785)
..+..|.+.|++..|-+.+. .+...|-+. |++++|...|++..+ .. ...+..+...+
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~-------------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLK-------------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHH-------------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHH-------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 34556667776666644443 334444444 566666666655432 11 22445566677
Q ss_pred HHcCChhHHHHHHHHHHHcC
Q 003937 388 EQNGLNKDAVELFRSMVREG 407 (785)
Q Consensus 388 ~~~g~~~~A~~~~~~m~~~g 407 (785)
.+.|++++|+++|++.....
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTC
T ss_pred HHhCCHHHHHHHHHHHHHHh
Confidence 77788888888887776543
No 207
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.32 E-value=1.4 Score=44.43 Aligned_cols=124 Identities=10% Similarity=0.127 Sum_probs=65.3
Q ss_pred HHHHHhc-CCHHHHHHHHHhcc----cCCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-----CHH-HHH
Q 003937 454 ITMYSKA-GNINAARRVFNLIH----WRQE----TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-----DHI-TYV 518 (785)
Q Consensus 454 i~~y~~~-g~~~~A~~~~~~~~----~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~-t~~ 518 (785)
...|... |++++|.+.|++.. ...+ ...+..+...+.+.|++++|+++|++....-... +.. .|.
T Consensus 121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 121 AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 3444444 55666655555432 1101 1234556667788888888888888877643221 111 233
Q ss_pred HHHHHhhccCCHHHHHHHHHHhhhc-CCCCCC--chhHHHHHHHHhh--cCCHHHHHHHHHhCC
Q 003937 519 GVLTACTHGGLVEQGQRYYNMMKNV-HKIKPT--PSHFASMVDLLGR--AGLLQEAYNFIENMP 577 (785)
Q Consensus 519 ~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 577 (785)
..+-++...|++..|.+.++..... .++..+ ......|++++-. ...+++|..-|+.+.
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 3333556678888888888876532 123222 2334455666533 235666777777663
No 208
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.28 E-value=0.069 Score=45.28 Aligned_cols=91 Identities=16% Similarity=0.148 Sum_probs=62.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHh
Q 003937 485 MIVALAQHGLGEEAIQLFERMLELGIKPDH--ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLG 561 (785)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~ 561 (785)
+..++-..|+.++|+.+|++....|+.... ..+..+.+.+...|++++|..+++.....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 345667788899999999999888876653 3677777888888999999998888775321101 1122222344667
Q ss_pred hcCCHHHHHHHHHh
Q 003937 562 RAGLLQEAYNFIEN 575 (785)
Q Consensus 562 ~~g~~~~A~~~~~~ 575 (785)
..|+.++|++.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 77888888776644
No 209
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.23 E-value=0.041 Score=54.29 Aligned_cols=93 Identities=13% Similarity=0.034 Sum_probs=56.7
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHH
Q 003937 552 HFASMVDLLGRAGLLQEAYNFIENM-PLEPDV----VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS---GAYSALC 623 (785)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~ 623 (785)
.|..-+..+.+.|++++|...|+.. ...|+. ..+--+...+...|+++.|...|+++++..|+++ .++..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 3444444445556666666666655 222332 2444556666777777777777777777666543 3444456
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 003937 624 NLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 624 ~~~~~~g~~~~a~~~~~~m~~ 644 (785)
.+|...|++++|..+++...+
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 667777777777777777654
No 210
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.18 E-value=0.01 Score=40.07 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 003937 583 VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCN 624 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 624 (785)
.+|..+..++...|++++|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788889999999999999999999999999988777653
No 211
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.18 E-value=1.9 Score=44.55 Aligned_cols=133 Identities=13% Similarity=0.164 Sum_probs=75.1
Q ss_pred hcCChhHHHHHhhcCCC---C------ChhhHHHHHHHHHccCChhHHHHHHhhCCCC-CccHHHHHHHHH--HhCCChh
Q 003937 60 KTESISYAKKVFDEMPV---K------TLCSWNTILSAYAKQGRLDLACEVFNLMPNR-DSVSWTTIIVTY--NEIGRFK 127 (785)
Q Consensus 60 ~~g~~~~a~~~~~~~~~---~------~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~-~~~~~~~li~~~--~~~g~~~ 127 (785)
+.+++.+|.++|.++-+ . ..+.-+.+|++|...+ ++.....+....+. ....|-.+..++ -+.+.+.
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~ 96 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYR 96 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHH
Confidence 44555555555555431 1 1223445556655433 33333333333321 133455555444 3567888
Q ss_pred HHHHHHHHhHHC--CCCCC------------hhhHHHHHHHHhccCChhHHHHHHHHHHHhCC----CCChhHHHHHHHH
Q 003937 128 NAIRMFVEMVQD--QVLPT------------QFTVTSVLASCTALGDLSAGKKVHSFVVKTGL----SGCVNVTNSLLNM 189 (785)
Q Consensus 128 ~a~~~~~~m~~~--g~~p~------------~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~ 189 (785)
+|++.+....+. +..|. -.-=+..+.++...|++.+|+.+++++...=+ ..+..+||.++-+
T Consensus 97 kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlm 176 (549)
T PF07079_consen 97 KALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLM 176 (549)
T ss_pred HHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 888888777654 32221 11113345667788999999988888876544 3788888888888
Q ss_pred HHhC
Q 003937 190 YAKV 193 (785)
Q Consensus 190 ~~~~ 193 (785)
+++.
T Consensus 177 lsrS 180 (549)
T PF07079_consen 177 LSRS 180 (549)
T ss_pred HhHH
Confidence 7763
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.16 E-value=0.36 Score=45.80 Aligned_cols=135 Identities=13% Similarity=0.097 Sum_probs=90.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCC----CCCCchhHHHHH
Q 003937 482 WTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHK----IKPTPSHFASMV 557 (785)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~~~~~~~li 557 (785)
-+.++..+.-+|.+.-.+.++.+.++..-+-+.+-...+.+.-.+.|+.+.|..+|+...+..+ +.-...+...+.
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3566777777888888899999999865555667778888888899999999999997765322 222222233333
Q ss_pred HHHhhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 558 DLLGRAGLLQEAYNFIENMPL-EP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
..|.-+.++.+|...+.+.+. +| |++.-|+-.-...-.|+...|.+..+.+.+..|...
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 455566677788877777742 23 334334333333445777788888888888877543
No 213
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.16 E-value=0.25 Score=52.72 Aligned_cols=196 Identities=14% Similarity=0.096 Sum_probs=92.3
Q ss_pred HHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHhhCCC---------C
Q 003937 38 RIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPN---------R 108 (785)
Q Consensus 38 ~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~---------~ 108 (785)
.+.+.|-.|+... +...++-.|.+.+|.++|.+--.. |.-+.+|.....++.|.++...-.. +
T Consensus 625 ~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e-----nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKR 696 (1081)
T KOG1538|consen 625 ERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE-----NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKR 696 (1081)
T ss_pred HHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch-----hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 3455565555443 344566778888888888765432 2334455555555666555433211 0
Q ss_pred -----CccHHHHHHHHHHhCCChhHHHHHHHH------hHHCCC---CCChhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 003937 109 -----DSVSWTTIIVTYNEIGRFKNAIRMFVE------MVQDQV---LPTQFTVTSVLASCTALGDLSAGKKVHSFVVKT 174 (785)
Q Consensus 109 -----~~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~g~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 174 (785)
|+.---+-...+...|+..+|.++.-+ +.+-+- ..+..+...+..-+.+...+..|-++|..|-..
T Consensus 697 A~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ 776 (1081)
T KOG1538|consen 697 ADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL 776 (1081)
T ss_pred HHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH
Confidence 111111222334445555555544321 111111 112223333333334444455555555443221
Q ss_pred CCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhh
Q 003937 175 GLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQ 254 (785)
Q Consensus 175 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~ 254 (785)
.+++++....+++++|.++-++.++--...|.....-++...++++|.+ +|.+
T Consensus 777 ---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqk------------------Afhk 829 (1081)
T KOG1538|consen 777 ---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQK------------------AFHK 829 (1081)
T ss_pred ---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHH------------------HHHH
Confidence 3445555555556666555555554333333333444444444444443 4455
Q ss_pred CCCchHHHHHHHHh
Q 003937 255 NGYDFEALGMFANM 268 (785)
Q Consensus 255 ~g~~~~A~~l~~~m 268 (785)
.|+-.||..+++++
T Consensus 830 AGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 830 AGRQREAVQVLEQL 843 (1081)
T ss_pred hcchHHHHHHHHHh
Confidence 66666777776666
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.12 E-value=0.021 Score=43.84 Aligned_cols=62 Identities=19% Similarity=0.223 Sum_probs=50.6
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAY 619 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 619 (785)
..|.+.+++++|.++++++ ...|+ ...|......+...|+++.|...++++++..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 5678889999999999888 55564 66777778888999999999999999999999766543
No 215
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.04 E-value=0.055 Score=54.36 Aligned_cols=128 Identities=16% Similarity=0.078 Sum_probs=84.3
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHH----hCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHhc-------ccC-CChh
Q 003937 414 TLSAMLSVSSSLASLDHGKQIHASALR----SGEA-SSLSVSNALITMYSKAGNINAARRVFNLI-------HWR-QETV 480 (785)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~-------~~~-p~~~ 480 (785)
.|..+-+.|.-.|+++.+...|+.-.. .|-. .....+..|.+.+.-.|+++.|.+.++.. ..+ -...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 345555556667888888888775443 2322 12344566777788888999988888743 233 1334
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLE----LG-IKPDHITYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~----~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
+.-+|...|.--.++++|+.++.+-+. .+ .--....+.+|..++...|..++|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 566778888877888899888876443 11 12233578888889999998888887765443
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.00 E-value=0.92 Score=46.72 Aligned_cols=160 Identities=20% Similarity=0.147 Sum_probs=100.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccCCChh-H-----HHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003937 452 ALITMYSKAGNINAARRVFNLIHWRQETV-S-----WTSMIVALAQ---HGLGEEAIQLFERMLELGIKPDHITYVGVLT 522 (785)
Q Consensus 452 ~li~~y~~~g~~~~A~~~~~~~~~~p~~~-~-----~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 522 (785)
.|+-.|....+++.-.++.+.+..-|+.. . --...-++.+ .|+.++|++++..+....-.++..||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 34445777888888888888876554221 1 1122334555 7888899999888766666777778777766
Q ss_pred Hhhc---------cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHH----HHHHHH---Hh----CC-C--C
Q 003937 523 ACTH---------GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQ----EAYNFI---EN----MP-L--E 579 (785)
Q Consensus 523 a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~----~~-~--~ 579 (785)
.|-. ....++|...|.+.- .+.|+..+--.++-++...|... +..++- .. -+ . .
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 5421 234677777776553 34566544434444454555322 222222 11 11 1 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003937 580 PDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 580 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
.|-..+.+++.++.-.|+.+.|.++++++..+.|+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 34455688999999999999999999999998774
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.67 E-value=0.022 Score=44.45 Aligned_cols=61 Identities=23% Similarity=0.207 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh----CCC---CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 583 VAWGSLLSACRVHKNLDLGKIAAEKLLLI----EPD---NSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
.+++.+...+...|++++|+..+++++++ .++ -..++..++.+|...|++++|.+++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777777788888888888777753 222 13467788888888888888888887764
No 218
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.63 E-value=5 Score=44.95 Aligned_cols=175 Identities=13% Similarity=0.099 Sum_probs=91.2
Q ss_pred HHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHH----HHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhc
Q 003937 215 NVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMI----AGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACAN 290 (785)
Q Consensus 215 ~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~ 290 (785)
..-+..+++...++.|..+-+.-.. +..+-..+. .-+.+.|++++|...|-+-+ .-+.|. .++.-+-.
T Consensus 338 e~kL~iL~kK~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI--~~le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 338 ETKLDILFKKNLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI--GFLEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc--ccCChH-----HHHHHhcC
Confidence 3445555666666666665554322 222222222 33456788888887776552 122332 24444445
Q ss_pred ccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHH
Q 003937 291 LEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFD 370 (785)
Q Consensus 291 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 370 (785)
......--.+++.+.+.|+..... -+.|+.+|.|.++.++-.++.+... .+.-..-.-..+..+.+.+-.++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gla~~dh-ttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANSDH-TTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccchh-HHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 555555556666677777644333 3668888888888888777777655 22111112333444444455555554444
Q ss_pred hcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 003937 371 SLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSM 403 (785)
Q Consensus 371 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 403 (785)
.... +...... .+-..+++++|++.+..|
T Consensus 488 k~~~-he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 488 KFKK-HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred Hhcc-CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 3332 2222222 223456677777776655
No 219
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.43 E-value=5.4 Score=44.08 Aligned_cols=324 Identities=14% Similarity=0.125 Sum_probs=171.4
Q ss_pred HHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh---HHHHHHHHHhCCCCCchHhHHHHHHHHHhcC
Q 003937 284 TLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGV---EIAQKIVEQSGISYLNVIAFTTLLDGYIKIG 360 (785)
Q Consensus 284 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g 360 (785)
+++-+...+.+..|.++-..+...-... ..++.....-+.+..+. +-+..+-+++...-...++|..+..--...|
T Consensus 443 vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 443 VIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 3444444555555555544433221122 45555555555555322 2222333334443234567777777777777
Q ss_pred CHHHHHHHHHhcCCC--------CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHH
Q 003937 361 DIGPARRIFDSLRDR--------DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGK 432 (785)
Q Consensus 361 ~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 432 (785)
+.+-|..+.+.=+.. +..-+...+.-..+.|+.+-...++..|.+. -+...|...+ .+...|.
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~ 592 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLAL 592 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH------Hhchhhh
Confidence 888888777654431 2223344455556666666666665555432 1111111111 1222333
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh-c-c----cCCChhHHHHHHHHHHHcCC---hHHH-----
Q 003937 433 QIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNL-I-H----WRQETVSWTSMIVALAQHGL---GEEA----- 498 (785)
Q Consensus 433 ~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~-~-~----~~p~~~~~~~li~~~~~~g~---~~~A----- 498 (785)
.++.+..+..-. ..|-+.|-. ++...+...|.. - . ..+-.........++++... .++|
T Consensus 593 ~lY~~~~r~~~~------~~l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~ 665 (829)
T KOG2280|consen 593 SLYRQFMRHQDR------ATLYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQM 665 (829)
T ss_pred HHHHHHHHhhch------hhhhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence 344433332100 112222222 222222222211 0 0 00111222333344444332 1122
Q ss_pred --HHHHHHHHH-CCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHh
Q 003937 499 --IQLFERMLE-LGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIEN 575 (785)
Q Consensus 499 --~~~~~~m~~-~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 575 (785)
+++.+.+.. .|..-...|.+-.+.-+...|...+|.++-.+.+ .||...|---+.+++..+++++-+++-++
T Consensus 666 kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 666 KLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 122222221 2333444466666777888899999988876654 37888888888899999999998888877
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 003937 576 MPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRK 640 (785)
Q Consensus 576 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 640 (785)
+. .+.-|.-+..+|.+.|+.++|...+-+.-.+. -...+|.+.|++.+|.+.--
T Consensus 741 kk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~--------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 741 KK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ--------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred cC---CCCCchhHHHHHHhcccHHHHhhhhhccCChH--------HHHHHHHHhccHHHHHHHHH
Confidence 63 24556678889999999999998877653321 56788999999999987643
No 220
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.41 E-value=5.1 Score=46.76 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=41.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCC-CHhH--HHHHHHHHHHcCChhH
Q 003937 319 LISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDR-DVVA--WTAMLVGYEQNGLNKD 395 (785)
Q Consensus 319 li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~--~~~li~~~~~~g~~~~ 395 (785)
-.-+|.++|+.++|++.++. +|++.+|..+-.++... |... -..|+.-+...+++-+
T Consensus 958 Aal~Ye~~GklekAl~a~~~--------------------~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~e 1017 (1265)
T KOG1920|consen 958 AALMYERCGKLEKALKAYKE--------------------CGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYE 1017 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHH--------------------hccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchh
Confidence 34467888888877665544 44777777777766653 3222 2456666666777766
Q ss_pred HHHHHHHHH
Q 003937 396 AVELFRSMV 404 (785)
Q Consensus 396 A~~~~~~m~ 404 (785)
|-++..+-.
T Consensus 1018 Aa~il~e~~ 1026 (1265)
T KOG1920|consen 1018 AAKILLEYL 1026 (1265)
T ss_pred HHHHHHHHh
Confidence 666665543
No 221
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.34 E-value=0.28 Score=48.47 Aligned_cols=89 Identities=10% Similarity=0.050 Sum_probs=53.7
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCCc----hhHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc
Q 003937 525 THGGLVEQGQRYYNMMKNVHKIKPTP----SHFASMVDLLGRAGLLQEAYNFIENM----PLEP-DVVAWGSLLSACRVH 595 (785)
Q Consensus 525 ~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~ 595 (785)
.+.|++++|...|+.+.+.+ |+. ..+-.+...|...|++++|...|+.+ |..| ....|..+...+...
T Consensus 154 ~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~ 230 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDK 230 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHc
Confidence 34455556655555555422 221 23445556666666666666666665 2112 133444455567788
Q ss_pred CCHHHHHHHHHHHHhhCCCCc
Q 003937 596 KNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~~ 616 (785)
|+.+.|...++++++..|++.
T Consensus 231 g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 231 GDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred CCHHHHHHHHHHHHHHCcCCH
Confidence 899999999999988888654
No 222
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.21 E-value=0.029 Score=43.74 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=34.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 553 FASMVDLLGRAGLLQEAYNFIENM-------P-LEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
|+.+...|.+.|++++|++.+++. + -.|+ ..+++.+...+...|+.++|+..+++++++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444445555555555555544443 1 1122 446677777777888888888887777653
No 223
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.10 E-value=0.19 Score=43.14 Aligned_cols=52 Identities=21% Similarity=0.337 Sum_probs=33.5
Q ss_pred CCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 003937 544 HKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM----PLEPDVVAWGSLLSACRVH 595 (785)
Q Consensus 544 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~ll~~~~~~ 595 (785)
..+.|+..+..+++.+|+..|++..|+++++.. +++-+..+|..|+.-+...
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 345567777777777777777777777766554 4444566777777665433
No 224
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.10 E-value=0.19 Score=51.00 Aligned_cols=63 Identities=14% Similarity=0.089 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 582 VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 582 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
..+++.|...+.+.+++..|++..+++++++|+|.-....-+.+|...|.++.|+..|+++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 346677777788999999999999999999999999999999999999999999999999976
No 225
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.09 E-value=4.9 Score=41.59 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=100.8
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchh-HHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELG-IKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSH-FAS 555 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-~~~ 555 (785)
-...|...++.-.+..-.+.|..+|-+..+.| +.++...+++++.-++ .|+..-|..+|+.-... -||... -+-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHHH
Confidence 34567778887777777889999999999988 5566778888887554 57788888888765542 244433 345
Q ss_pred HHHHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 003937 556 MVDLLGRAGLLQEAYNFIENM--PLEPD--VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 556 li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 615 (785)
.++-+.+.++-+.|..+|+.. .+..+ ...|..+|.--..-|++..+..+-+++.++-|+.
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 667778889999999999865 22333 4578888888888899999999989998888853
No 226
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.00 E-value=0.26 Score=41.31 Aligned_cols=89 Identities=21% Similarity=0.201 Sum_probs=72.7
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc----hhHHHHHHHHHhcCCh
Q 003937 559 LLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS----GAYSALCNLYSSCGKW 632 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~----~~~~~l~~~~~~~g~~ 632 (785)
+++..|+++.|++.|.+. .+-| ....||.-..+++-.|+.++|..-+++++++.-+.. ..|+--+.+|-..|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567889999999988877 3334 678899999999999999999999999999753222 2577788889999999
Q ss_pred HHHHHHHHHHHhCCC
Q 003937 633 EDAANIRKSMKYVGV 647 (785)
Q Consensus 633 ~~a~~~~~~m~~~g~ 647 (785)
+.|..-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999999998877665
No 227
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.95 E-value=1.8 Score=41.19 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=30.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC--C----CHhHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 003937 353 LDGYIKIGDIGPARRIFDSLRD--R----DVVAWTAMLVGYEQNGLNKDAVELFRSMVRE 406 (785)
Q Consensus 353 i~~~~~~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 406 (785)
...+.+.|++++|...|+.+.. | -..+.-.++.++.+.|++++|...|++.++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555566666666666543 1 1223445566677777777777777776653
No 228
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.94 E-value=2 Score=36.37 Aligned_cols=141 Identities=13% Similarity=0.082 Sum_probs=79.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHH
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQE 568 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (785)
+.-.|..++..++..+.... .+..-++-++--....-+-+-..+.++.+-+-+.+ ..+|++..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDi--------------s~C~NlKr 74 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDI--------------SKCGNLKR 74 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-G--------------GG-S-THH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------hhhcchHH
Confidence 34466677777777776652 12222333332222223334445555554432222 23445555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 003937 569 AYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVK 648 (785)
Q Consensus 569 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 648 (785)
...-+-.++ .+......-++.....|.-++-.+++..+...+..++....-++++|.+.|+..++.+++.+.-++|++
T Consensus 75 Vi~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 75 VIECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 444444443 223334556777888899898888888888655448889999999999999999999999999999985
No 229
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.64 E-value=1.9 Score=37.98 Aligned_cols=122 Identities=16% Similarity=0.231 Sum_probs=61.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC
Q 003937 452 ALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGL 529 (785)
Q Consensus 452 ~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 529 (785)
.++..+.+.+........++.+..+ .+....|.++..|++.+ ..+.++.++. .++......++..|.+.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 3444444455555555555544222 23344555666665543 2333333332 2233444456666666666
Q ss_pred HHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 003937 530 VEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA-GLLQEAYNFIENMPLEPDVVAWGSLLSACR 593 (785)
Q Consensus 530 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~ 593 (785)
++++..++..+.. +...++.+... ++.+.|.+++.+-. +...|..++..+.
T Consensus 85 ~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~---~~~lw~~~~~~~l 136 (140)
T smart00299 85 YEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN---NPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 6666666655432 22233333333 66666777666532 4556666665543
No 230
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=94.54 E-value=3.6 Score=39.06 Aligned_cols=162 Identities=16% Similarity=0.149 Sum_probs=94.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcccC-CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhc
Q 003937 454 ITMYSKAGNINAARRVFNLIHWR-QE----TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI--TYVGVLTACTH 526 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~ 526 (785)
...+...|++++|.+.|+.+..+ |+ ....-.++.++-+.|++++|...|++.++. -|+.. -+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHH
Confidence 34456778888888888887533 22 224556677888888999999999888873 45432 23333333221
Q ss_pred c-------------CCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHH
Q 003937 527 G-------------GLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAW--GSLLSA 591 (785)
Q Consensus 527 ~-------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~ll~~ 591 (785)
. +...+|...|+. ++.-|=.+....+|...+..+. +...- -.+..-
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~----------------li~~yP~S~y~~~A~~~l~~l~---~~la~~e~~ia~~ 150 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEE----------------LIKRYPNSEYAEEAKKRLAELR---NRLAEHELYIARF 150 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHH----------------HHHH-TTSTTHHHHHHHHHHHH---HHHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHH----------------HHHHCcCchHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 1 112233333333 4444444445555555544441 11111 123445
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCChHHHH
Q 003937 592 CRVHKNLDLGKIAAEKLLLIEPDNSG---AYSALCNLYSSCGKWEDAA 636 (785)
Q Consensus 592 ~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 636 (785)
|.+.|.+..|..-++.+++.-|+.+. +...|+.+|.+.|..+.+.
T Consensus 151 Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 151 YYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 78899999999999999999886543 5677888899999888544
No 231
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.52 E-value=0.38 Score=41.29 Aligned_cols=95 Identities=6% Similarity=0.108 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTH 526 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 526 (785)
..++.+++.++++.|+++....+++..=.- |+ .+-...+. --....+.|+..+..+++.+++.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI-~~-------~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~ 64 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGI-DV-------NGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGY 64 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCC-CC-------CCccccCc---------cCCCCCCCCCHHHHHHHHHHHHh
Confidence 456677777777778777777777654100 00 00000000 01122356777888888888888
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH
Q 003937 527 GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD 558 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 558 (785)
.|++..|.++.+...+.++++-+...|..|+.
T Consensus 65 n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 65 NGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred cccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 88888888888888777887777777777665
No 232
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.46 E-value=0.85 Score=47.82 Aligned_cols=147 Identities=16% Similarity=0.118 Sum_probs=89.0
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHH---
Q 003937 491 QHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQ--- 567 (785)
Q Consensus 491 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~--- 567 (785)
+..+.+.-+++-++.++ +.||..+--.++ +-..+..+.++.+++++..+. | . ..|++....+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E-------~~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----E-------ASLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----H-------Hhhchhhhhhccc
Confidence 34556666677777776 678776443333 334455678888888877651 1 0 0011111000
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 568 EAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD--NSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 568 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...+.+..-..+|-..+=..|...+++.|+.++|.+.++.+++..|. +......|+..|...+++.|+..++.+-.+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111111112222333455666778889999999999999887664 4467888999999999999999998887655
Q ss_pred CCccCCc
Q 003937 646 GVKKTQG 652 (785)
Q Consensus 646 g~~~~~~ 652 (785)
.+.+...
T Consensus 325 ~lpkSAt 331 (539)
T PF04184_consen 325 SLPKSAT 331 (539)
T ss_pred cCCchHH
Confidence 4444433
No 233
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.46 E-value=4.9 Score=38.59 Aligned_cols=195 Identities=22% Similarity=0.214 Sum_probs=124.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhccc----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIHW----RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLT 522 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 522 (785)
..........+...+.+..+...+..... ......+..+...+...+++.++.+.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 34455566666777777777777665532 12444555666666667777777777777776433331 12222222
Q ss_pred -HhhccCCHHHHHHHHHHhhhcCCCCC----CchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 003937 523 -ACTHGGLVEQGQRYYNMMKNVHKIKP----TPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD--VVAWGSLLSACRV 594 (785)
Q Consensus 523 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~ll~~~~~ 594 (785)
++...|.++.+...+..... ..| ....+......+...++.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67777888888888877643 222 2333333444456677888888877776 33333 5667777777788
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 595 HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
.++.+.|...+.......|.....+..+...+...|.++++...+......
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888888888888888865556666777776777788888777776543
No 234
>PRK11906 transcriptional regulator; Provisional
Probab=94.45 E-value=1.4 Score=46.23 Aligned_cols=143 Identities=13% Similarity=0.131 Sum_probs=87.9
Q ss_pred hHHHHHHHHHHHH-CCCCCCHH-HHHHHHHHhhc---------cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc
Q 003937 495 GEEAIQLFERMLE-LGIKPDHI-TYVGVLTACTH---------GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA 563 (785)
Q Consensus 495 ~~~A~~~~~~m~~-~g~~p~~~-t~~~ll~a~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 563 (785)
.+.|+.+|.+... +.+.|+.. .|..+..++.. .....+|.+.-+...+. -.-|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence 5678888888882 22677764 44433332211 22344555555555441 123455555566666777
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH--HHHHHHhcCChHHHHHHH
Q 003937 564 GLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSA--LCNLYSSCGKWEDAANIR 639 (785)
Q Consensus 564 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~a~~~~ 639 (785)
|+++.|..+|++. .+.|| ..+|......+.-.|+.++|.+.++++++++|.....-.. .++.|+..+ .++|.+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 7788888888887 56776 5566666666777888888888888888888865443333 333465554 55666554
Q ss_pred H
Q 003937 640 K 640 (785)
Q Consensus 640 ~ 640 (785)
-
T Consensus 431 ~ 431 (458)
T PRK11906 431 Y 431 (458)
T ss_pred h
Confidence 3
No 235
>PRK11906 transcriptional regulator; Provisional
Probab=94.42 E-value=0.68 Score=48.45 Aligned_cols=116 Identities=10% Similarity=0.047 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHh---------hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003937 529 LVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLG---------RAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHK 596 (785)
Q Consensus 529 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~---------~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 596 (785)
..+.|..+|.+......+.|+ ...|..+...+. ......+|.++.++. .+.| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 346677788877744456666 334444333221 122445666666665 4555 6777777777777888
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 597 NLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 597 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+.+.|...++++..++|+.+.+|...+..+..+|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999988544
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.20 E-value=10 Score=41.32 Aligned_cols=159 Identities=13% Similarity=0.058 Sum_probs=103.9
Q ss_pred HHHHHHHHhcccchhhHHHHHHHHHHhcCCCCc------chHHHHHHHHH----hcCChHHHHHHHHHhCCCCCchHhHH
Q 003937 281 LASTLSACANLEKLKLGKQIHAYIIRTEFDATG------PVGNALISCYA----KVGGVEIAQKIVEQSGISYLNVIAFT 350 (785)
Q Consensus 281 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~------~~~~~li~~y~----~~g~~~~A~~~~~~~~~~~~~~~~~~ 350 (785)
+..+++..+=.||-+.|.+.+....+.+-.-.+ ..|...+..++ ...+.+.|.++++.+..+.|+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 445566666667777777766665543211111 12233333332 24577889999999999999776665
Q ss_pred HH-HHHHHhcCCHHHHHHHHHhcCCC-------CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 003937 351 TL-LDGYIKIGDIGPARRIFDSLRDR-------DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVS 422 (785)
Q Consensus 351 ~l-i~~~~~~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 422 (785)
.. .+.+...|++++|.+.|+..... ....+--+...+.-..++++|.+.|..+.+.. ..+..+|..+..+|
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 54 57788899999999999975531 22344455666788899999999999998753 34555666666555
Q ss_pred -hccCch-------HHHHHHHHHHHH
Q 003937 423 -SSLASL-------DHGKQIHASALR 440 (785)
Q Consensus 423 -~~~~~~-------~~a~~~~~~~~~ 440 (785)
...++. ++|.+++..+..
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHHH
Confidence 344555 666777666543
No 237
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=0.51 Score=46.25 Aligned_cols=111 Identities=21% Similarity=0.196 Sum_probs=66.7
Q ss_pred CCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhh-HHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHH
Q 003937 240 RDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFT-LASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNA 318 (785)
Q Consensus 240 ~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 318 (785)
.|...|-.|-..|.+.|+...|..-|....+-.|-.|+... |...+-.-+...
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~-------------------------- 207 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQ-------------------------- 207 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCc--------------------------
Confidence 37888999999999999999999999888666665555332 111111111111
Q ss_pred HHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHH
Q 003937 319 LISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD--RDVVAWTAMLV 385 (785)
Q Consensus 319 li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~ 385 (785)
...++..+|++....+| |+.+...|...+...|++.+|...|+.|.+ |.-..|..+|.
T Consensus 208 ---------~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 208 ---------MTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred ---------ccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 23445555666555444 455566666666666677777776666654 33334444443
No 238
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.09 E-value=0.56 Score=40.73 Aligned_cols=66 Identities=17% Similarity=0.179 Sum_probs=44.5
Q ss_pred HhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-hHHHHHHH
Q 003937 560 LGRAGLLQEAYNFIENM----PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG-AYSALCNL 625 (785)
Q Consensus 560 ~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~ 625 (785)
..+.|++++|.+.|+.+ |..| ....-..|+.++.+.++++.|...+++.+++.|.++. -|.....+
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 34667777777777776 3333 2345566788888888888888888888888887663 33333333
No 239
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.85 E-value=0.33 Score=43.36 Aligned_cols=66 Identities=27% Similarity=0.386 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcc--cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHH
Q 003937 451 NALITMYSKAGNINAARRVFNLIH--WRQETVSWTSMIVALAQHGLGEEAIQLFERMLE-----LGIKPDHIT 516 (785)
Q Consensus 451 ~~li~~y~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t 516 (785)
..++..+...|++++|..+.+.+. .+-|...|..+|.+|...|+..+|++.|+++.. .|+.|+..|
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 455666666777777777776653 222555677777777777777777777766542 366665543
No 240
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.83 E-value=0.39 Score=50.09 Aligned_cols=62 Identities=13% Similarity=0.031 Sum_probs=43.4
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDV----VAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|...+++++++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 555666677777777777777777664 556653 34777777777777777777777777775
No 241
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=9.3 Score=39.31 Aligned_cols=85 Identities=15% Similarity=0.064 Sum_probs=48.3
Q ss_pred HHHhcCCHHHHHHHHHhcc-c-----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccC
Q 003937 456 MYSKAGNINAARRVFNLIH-W-----RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGG 528 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~-~-----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g 528 (785)
...+.|++..|.+.+.+.. . +|+...|........+.|+.++|+.--++... +.|.-+ .|..-..++...+
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHH
Confidence 3456677777777776542 1 13444455555566667777777776666654 333322 3333334455566
Q ss_pred CHHHHHHHHHHhhh
Q 003937 529 LVEQGQRYYNMMKN 542 (785)
Q Consensus 529 ~~~~a~~~~~~m~~ 542 (785)
.|++|.+.+++..+
T Consensus 336 ~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777766554
No 242
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.75 E-value=7.9 Score=40.06 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=39.3
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCC---C----HhHHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 003937 353 LDGYIKIGDIGPARRIFDSLRDR---D----VVAWTAMLVGYEQ---NGLNKDAVELFRSMVREGPKPNNYTLSAMLSV 421 (785)
Q Consensus 353 i~~~~~~g~~~~A~~~f~~~~~~---~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 421 (785)
+-+|-...+++...++.+.+... + ...-....-++.+ .|+.++|++++..+......++..||..+...
T Consensus 148 llSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 148 LLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 33455555667777777666542 1 1111122334445 67788888888776666666666676554433
No 243
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.75 E-value=0.55 Score=45.08 Aligned_cols=98 Identities=18% Similarity=0.262 Sum_probs=77.1
Q ss_pred HHHHHhcc--cCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC----------
Q 003937 467 RRVFNLIH--WRQETVSWTSMIVALAQH-----GLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGL---------- 529 (785)
Q Consensus 467 ~~~~~~~~--~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~---------- 529 (785)
++.|.... .+ |-.+|-+++..+..+ +..+-....++.|.+-|+.-|..+|..||+.+-+...
T Consensus 54 e~~F~aa~~~~R-dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 54 EKQFEAAEPEKR-DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhccCcccc-cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 44555554 44 788888888887654 4466666778899999999999999999998765432
Q ss_pred ------HHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCH
Q 003937 530 ------VEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLL 566 (785)
Q Consensus 530 ------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (785)
-+=++.++++|.. +|+.||.++-..|++++++.|..
T Consensus 133 ~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhcccccc
Confidence 2447889999985 99999999999999999999854
No 244
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.48 E-value=0.16 Score=31.85 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003937 583 VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
.+|..+...+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888888888888888888888885
No 245
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.45 E-value=0.71 Score=44.37 Aligned_cols=101 Identities=10% Similarity=0.114 Sum_probs=79.3
Q ss_pred HHHHHHHHhcC--CCCHhHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC---------
Q 003937 363 GPARRIFDSLR--DRDVVAWTAMLVGYEQN-----GLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLA--------- 426 (785)
Q Consensus 363 ~~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~--------- 426 (785)
-..++.|.... ++|-.+|-+++..|... +..+-.-..++.|.+-|+.-|..+|..+|+.+-+..
T Consensus 51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~ 130 (406)
T KOG3941|consen 51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK 130 (406)
T ss_pred cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence 34456677666 57888888888877654 556666677888999999999999999998875432
Q ss_pred -------chHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCH
Q 003937 427 -------SLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNI 463 (785)
Q Consensus 427 -------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 463 (785)
+-+.+..++++|..+|+-||..+-..|++++++.|-.
T Consensus 131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3356788999999999999999999999999887754
No 246
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.43 E-value=1.5 Score=43.83 Aligned_cols=122 Identities=12% Similarity=0.074 Sum_probs=55.3
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCC----CCchhHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHH---
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIK----PTPSHFASMVDLLGRAGLLQEAYNFIENM-------PLEPDVVAW--- 585 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~--- 585 (785)
+..|....+.++++.+.|+...+...-. ....++..|...|++..+.++|.-+..+. +++-=..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 3334444445555555555544311111 11334555556666666655554433332 211101112
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHhh--CCCCch----hHHHHHHHHHhcCChHHHHHHHHH
Q 003937 586 --GSLLSACRVHKNLDLGKIAAEKLLLI--EPDNSG----AYSALCNLYSSCGKWEDAANIRKS 641 (785)
Q Consensus 586 --~~ll~~~~~~g~~~~a~~~~~~~~~~--~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~ 641 (785)
-.|.-+++..|.+..|.+..+++.++ ...|.. ....++++|-..|+.|.|..-++.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 12233455666666666666665542 222222 233556666666665555544443
No 247
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.42 E-value=2.1 Score=42.29 Aligned_cols=113 Identities=14% Similarity=0.068 Sum_probs=49.7
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH----HHhhcCCHH
Q 003937 492 HGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD----LLGRAGLLQ 567 (785)
Q Consensus 492 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~----~~~~~g~~~ 567 (785)
+|+..+|-..++++++. .+.|...+.-.-.+|...|+.+.-...++++.- ...|+...|..+=. ++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34444444455554442 233334444444455555555555555544432 22344333332222 223455555
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003937 568 EAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEK 607 (785)
Q Consensus 568 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 607 (785)
+|++.-++. .+.| |.-.-.+........|+..++.+..++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 555555444 3333 233333444444455555555554443
No 248
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.36 E-value=16 Score=40.83 Aligned_cols=100 Identities=7% Similarity=0.036 Sum_probs=66.0
Q ss_pred HHHHHhCCChHHHHHHHhcCCCC-----CcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHH
Q 003937 187 LNMYAKVGDEMMAKAVFDGMRLK-----NVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEA 261 (785)
Q Consensus 187 i~~~~~~g~~~~A~~~~~~m~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A 261 (785)
|+-+.+.+.+++|...-+..... -...+...|..+.-.|++++|-.+.-.|...+..-|.--+..+...++....
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I 442 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI 442 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence 45556677788888777655522 1236778888888888888888888888888888888888888877776554
Q ss_pred HHHHHHhhhcCCCCCChhhHHHHHHHHhc
Q 003937 262 LGMFANMLKDSSLKPDKFTLASTLSACAN 290 (785)
Q Consensus 262 ~~l~~~ml~~~g~~p~~~t~~~ll~~~~~ 290 (785)
..++ ....-..+...|-.+|..+..
T Consensus 443 a~~l----Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 443 APYL----PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred hccC----CCCCcccCchHHHHHHHHHHH
Confidence 3332 221112234455556665544
No 249
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.14 E-value=0.26 Score=30.72 Aligned_cols=32 Identities=31% Similarity=0.282 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 615 (785)
.|..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 56667777888888888888888888888854
No 250
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.11 E-value=3.2 Score=42.55 Aligned_cols=136 Identities=19% Similarity=0.151 Sum_probs=92.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCH
Q 003937 487 VALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLL 566 (785)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (785)
+.|.+.|++..|...|++.... |. +...-+.++...... .-...+..+.-.|.+.+++
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~~ 273 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKEY 273 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhhH
Confidence 3567788888888888776541 10 111111122222111 1123455667778888888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 003937 567 QEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA-ANIRKSMK 643 (785)
Q Consensus 567 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 643 (785)
.+|++..++. .++| |+-..--=..+|...|+++.|+..|+++++++|+|..+-.-|+.+-.+..+.++. .++|..|-
T Consensus 274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888877666 4444 5556666677888999999999999999999999988888888877776666655 77888886
Q ss_pred h
Q 003937 644 Y 644 (785)
Q Consensus 644 ~ 644 (785)
.
T Consensus 354 ~ 354 (397)
T KOG0543|consen 354 A 354 (397)
T ss_pred h
Confidence 4
No 251
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=8.4 Score=36.63 Aligned_cols=197 Identities=13% Similarity=0.087 Sum_probs=107.0
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCCh-hHHHHHHHHHHHcCChHH
Q 003937 419 LSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQET-VSWTSMIVALAQHGLGEE 497 (785)
Q Consensus 419 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~ 497 (785)
-.++....+++++..-+....+. .+.+...|. ....++.|.-+.+++..-|.+ ..|+.-...|..+|.++.
T Consensus 38 AvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gspdt 109 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDT 109 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcch
Confidence 34555566666666655444321 111111111 122344444555555433232 345666677888888777
Q ss_pred HHHHHHHHHH--CCCCCCHH--HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHH
Q 003937 498 AIQLFERMLE--LGIKPDHI--TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFI 573 (785)
Q Consensus 498 A~~~~~~m~~--~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 573 (785)
|-..+++.-+ +++.||.. .|.--+......++...|.+++. .....|.+..+++||-..|
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~g----------------k~sr~lVrl~kf~Eaa~a~ 173 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYG----------------KCSRVLVRLEKFTEAATAF 173 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHH----------------HhhhHhhhhHHhhHHHHHH
Confidence 7666665432 23566653 44444444444444444444443 3445667777777776666
Q ss_pred HhCC-----C--CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh----hCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 003937 574 ENMP-----L--EPDV-VAWGSLLSACRVHKNLDLGKIAAEKLLL----IEPDNSGAYSALCNLYSSCGKWEDAANIRK 640 (785)
Q Consensus 574 ~~~~-----~--~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 640 (785)
.+-. + -|+. ..+-+.|-.+.-..++..|+..++.--+ ..|++..+...|+.+| ..|+.|++.++..
T Consensus 174 lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 174 LKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 5541 1 1222 1233344444555678888888887655 3566777788888777 6688888776643
No 252
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.62 E-value=9.8 Score=36.35 Aligned_cols=198 Identities=19% Similarity=0.138 Sum_probs=128.8
Q ss_pred hhHHHHHHHHhccCchHHHHHHHHHHHHh-CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-CC-hhHHHHHHH-H
Q 003937 413 YTLSAMLSVSSSLASLDHGKQIHASALRS-GEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-QE-TVSWTSMIV-A 488 (785)
Q Consensus 413 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~-~~~~~~li~-~ 488 (785)
..+......+...+.+..+...+...... ........+..+...+...+....+.+.+...... ++ ...+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33444444455555555555555444442 23334445555666666777778888888766532 12 222333333 6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhhc
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKP----DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGRA 563 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~ 563 (785)
+...|+.+.|...|.+... ..| ....+......+...+..+.+...+..... .... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 8888999999999998855 344 223444444456778889999999888875 2233 356677788888888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003937 564 GLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 564 g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
+..++|...+... ...|+ ...+..+...+...+..+.+...+++.....|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8999999888877 34454 445555555555777899999999999998885
No 253
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.50 E-value=7 Score=34.37 Aligned_cols=130 Identities=14% Similarity=0.124 Sum_probs=84.7
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMV 557 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 557 (785)
+...-..++..+...+.......+++.+...+ ..+....+.++..+++.+ ..+....+.. .++.......+
T Consensus 6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~ 76 (140)
T smart00299 6 DPIDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVG 76 (140)
T ss_pred CcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHH
Confidence 33445667888888888999999999988876 355667788888887653 3444455442 12233344577
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 558 DLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVH-KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
..+.+.+.++++.-++.+++...+ .+..+..+ ++.+.|.+.+.+ +.++..|..++..+.
T Consensus 77 ~~c~~~~l~~~~~~l~~k~~~~~~------Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 77 KLCEKAKLYEEAVELYKKDGNFKD------AIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHcCcHHHHHHHHHhhcCHHH------HHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 778888888888888888763222 22223333 778888887775 235566766666554
No 254
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.48 E-value=14 Score=37.76 Aligned_cols=115 Identities=13% Similarity=0.171 Sum_probs=54.0
Q ss_pred HHHHhcCCHHHHHHHHHhcc-cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHhhccCCHH
Q 003937 455 TMYSKAGNINAARRVFNLIH-WRQETVSWTSMIVALAQHGLGEEAIQLFERMLE-LGIKPDH-ITYVGVLTACTHGGLVE 531 (785)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~-~t~~~ll~a~~~~g~~~ 531 (785)
..|.+.|++.++-.+++.+- ..|.+..|... .+++.|+ .++.-+++... ..++||. .+...+..+-...|++.
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 34555555555555555542 22333322221 1223332 22222222221 1145554 34555555555666666
Q ss_pred HHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc-CCHHHHHHHHHhC
Q 003937 532 QGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA-GLLQEAYNFIENM 576 (785)
Q Consensus 532 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 576 (785)
.|..--+... ...|....|..|.+.-... |+-.++...+.+.
T Consensus 347 ~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 347 AARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 5555444433 2456666666666554433 6666666666555
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.15 E-value=4.7 Score=43.29 Aligned_cols=159 Identities=14% Similarity=0.090 Sum_probs=104.4
Q ss_pred HHhhcCCCcchHHHHHHH-HHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHH
Q 003937 21 QSNLKSRNPFVGKLVHAR-IIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLAC 99 (785)
Q Consensus 21 ~~~~~~~~~~~a~~~~~~-~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 99 (785)
+...-.++++.+....+. -+-.. .+....+.++..+-+.|-++.|.++-.. -..--....+.|+++.|.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~--i~~~~~~~i~~fL~~~G~~e~AL~~~~D--------~~~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPN--IPKDQGQSIARFLEKKGYPELALQFVTD--------PDHRFELALQLGNLDIAL 338 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS---------HHHHHHHHHHCT-HHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhccc--CChhHHHHHHHHHHHCCCHHHHHhhcCC--------hHHHhHHHHhcCCHHHHH
Confidence 444456777776555431 11111 2245588899999999999999987443 123445667899999999
Q ss_pred HHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCC
Q 003937 100 EVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGC 179 (785)
Q Consensus 100 ~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~ 179 (785)
+.-++.. +...|..|-....+.|+++-|.+.|.+... |..++-.+...|+.+.-.++.......|
T Consensus 339 ~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~---- 403 (443)
T PF04053_consen 339 EIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG---- 403 (443)
T ss_dssp HHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred HHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc----
Confidence 9877665 566899999999999999999999988753 6666667777888888888877777766
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHhcC
Q 003937 180 VNVTNSLLNMYAKVGDEMMAKAVFDGM 206 (785)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~~~~m 206 (785)
-+|....++.-.|+.++..+++.+-
T Consensus 404 --~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 404 --DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ---HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred --CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 2455555666667777777766543
No 256
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.00 E-value=24 Score=39.51 Aligned_cols=143 Identities=13% Similarity=0.093 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCC-CCcccHHHHHHHHhhCCCc
Q 003937 180 VNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIE-RDVVTWNSMIAGYSQNGYD 258 (785)
Q Consensus 180 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-~~~~~~~~li~~~~~~g~~ 258 (785)
..++..+|+.+.-.|++++|-.+.-.|-..+..-|---+..+...++......++-.-+. -+...|..++..+.. .+
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~- 469 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SD- 469 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HH-
Confidence 345677777788888888888888888877777777777777777777665555544333 355678877777766 22
Q ss_pred hHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 003937 259 FEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQ 338 (785)
Q Consensus 259 ~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 338 (785)
..-|.+.++. ..++.+.-..++++.- ....+. .-+..+...|+..|...++++.|.+++-.
T Consensus 470 ---~~~F~e~i~~--Wp~~Lys~l~iisa~~------------~q~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylk 530 (846)
T KOG2066|consen 470 ---VKGFLELIKE--WPGHLYSVLTIISATE------------PQIKQN--SESTALLEVLAHLYLYDNKYEKALPIYLK 530 (846)
T ss_pred ---HHHHHHHHHh--CChhhhhhhHHHhhcc------------hHHHhh--ccchhHHHHHHHHHHHccChHHHHHHHHh
Confidence 2223333122 2233332222222211 011110 11112233488899999999999998877
Q ss_pred hCCCC
Q 003937 339 SGISY 343 (785)
Q Consensus 339 ~~~~~ 343 (785)
.+...
T Consensus 531 lk~~~ 535 (846)
T KOG2066|consen 531 LQDKD 535 (846)
T ss_pred ccChH
Confidence 66654
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.90 E-value=5.2 Score=39.30 Aligned_cols=120 Identities=14% Similarity=0.078 Sum_probs=77.9
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH---HHHHHhcCCHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSL---LSACRVHKNLD 599 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l---l~~~~~~g~~~ 599 (785)
.....|+..+|...|+.... -.+-+...--.|...|...|+.++|..++..+|.+-...-|..+ |....+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34566777777777777664 12223455566778888888888888888888654433333332 22222222222
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 600 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+.. .+++-..-+|+|...-..|...|...|+.++|.+.+-.+.++
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222 233334568999999999999999999999998877766543
No 258
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.40 E-value=24 Score=38.31 Aligned_cols=187 Identities=13% Similarity=0.088 Sum_probs=126.5
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003937 445 SSLSVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLT 522 (785)
Q Consensus 445 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 522 (785)
++...|..-++.-.+.|+.+.+.-+|++.... -=..-|-..+.-....|+.+-|-.++....+--++-.+.+-..-..
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 35677888888888999999999999887432 1223455555555556888888888777666433333333332333
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHHH-----H
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAY---NFIENM-PLEPDVVAWGSLLSA-----C 592 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~ll~~-----~ 592 (785)
-+...|+.+.|..+++.+.+. + |+ +..-.--+....+.|..+.+. +++... +.+-+..+...+.-- +
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 466789999999999999873 3 55 333334466778899998887 555444 222222222222221 4
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 634 (785)
...++.+.|..++.++.+..|++...|..+++.....+...+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e 493 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGRE 493 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchh
Confidence 566889999999999999999999999999999877764433
No 259
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.18 E-value=1.6 Score=42.33 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=31.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 588 LLSACRVHKNLDLGKIAAEKLLLIEPDN---SGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 588 ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
|...+...|+++.|...|..+.+-.|++ +.++.-|+.+..+.|+-++|..++++..+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4455555566666666666655544432 34455555556666666666666666543
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.13 E-value=3.9 Score=44.54 Aligned_cols=172 Identities=12% Similarity=0.074 Sum_probs=99.3
Q ss_pred hHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC-CCh---------hhHHHHHHHHHc----cCChh
Q 003937 31 VGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV-KTL---------CSWNTILSAYAK----QGRLD 96 (785)
Q Consensus 31 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~---------~~~~~li~~~~~----~g~~~ 96 (785)
.+.-+|.-+++.= + .....+++..+-.|+-+.+.+++....+ +++ ..|..++..++- ....+
T Consensus 175 ~G~G~f~L~lSlL-P---p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~ 250 (468)
T PF10300_consen 175 FGFGLFNLVLSLL-P---PKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE 250 (468)
T ss_pred HHHHHHHHHHHhC-C---HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence 3445555555431 2 2355677777777777777777766543 222 245555554443 45577
Q ss_pred HHHHHHhhCCC--CCccHHHHHH-HHHHhCCChhHHHHHHHHhHHCCC---CCChhhHHHHHHHHhccCChhHHHHHHHH
Q 003937 97 LACEVFNLMPN--RDSVSWTTII-VTYNEIGRFKNAIRMFVEMVQDQV---LPTQFTVTSVLASCTALGDLSAGKKVHSF 170 (785)
Q Consensus 97 ~A~~~f~~m~~--~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 170 (785)
.|.++++.+.. |+...|...- +.+...|++++|++.|++...... +.....+--+.-.+...+++++|...+..
T Consensus 251 ~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 251 EAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 88888888876 7777776554 344557889999999887653111 11222333444555566777777777777
Q ss_pred HHHhCCCCChhHHHHHH-HHHHhCCCh-------HHHHHHHhcCC
Q 003937 171 VVKTGLSGCVNVTNSLL-NMYAKVGDE-------MMAKAVFDGMR 207 (785)
Q Consensus 171 ~~~~g~~~~~~~~~~li-~~~~~~g~~-------~~A~~~~~~m~ 207 (785)
+.+.. ..+..+|.-+. .+|...|+. ++|.++|.+++
T Consensus 331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 77654 22233333222 334455655 56666665554
No 261
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.12 E-value=2 Score=42.53 Aligned_cols=116 Identities=13% Similarity=0.057 Sum_probs=92.0
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHH----HHHHHHHhcCCHH
Q 003937 526 HGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PL-EPDVVAWG----SLLSACRVHKNLD 599 (785)
Q Consensus 526 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~----~ll~~~~~~g~~~ 599 (785)
..|...+|-..++++.+ ..+.|...+.-.=+++.-.|+.+.-...+++. |. .||...|. .+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45677777788888886 45667777777778888899999888888888 43 66664433 2233356789999
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 600 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
+|++..+++++++|.|.-+..++..++--.|+..|+.++..+-.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 99999999999999999999999999999999999999877654
No 262
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.89 E-value=5.4 Score=42.80 Aligned_cols=132 Identities=11% Similarity=0.130 Sum_probs=78.4
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCC
Q 003937 415 LSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGL 494 (785)
Q Consensus 415 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~ 494 (785)
...++.-+.+.|..+.|.++-..- ..-.+...++|+++.|.++-++.. +...|..|......+|+
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~------------~~rFeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP------------DHRFELALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H------------HHHHHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh------------HHHhHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCC
Confidence 445555555666666665553221 233556677888888887766554 66688888888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHH
Q 003937 495 GEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIE 574 (785)
Q Consensus 495 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 574 (785)
.+-|.+.|++... |..|+-.|.-.|+.+.-.++-+.... .| -++.-...+.-.|+.++..+++.
T Consensus 363 ~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~-~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 363 IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE-RG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH-TT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH-cc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 8888888877543 45555566667776666665554443 22 13334444455666666666666
Q ss_pred hCC
Q 003937 575 NMP 577 (785)
Q Consensus 575 ~~~ 577 (785)
+.+
T Consensus 427 ~~~ 429 (443)
T PF04053_consen 427 ETG 429 (443)
T ss_dssp HTT
T ss_pred HcC
Confidence 654
No 263
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=90.71 E-value=20 Score=36.03 Aligned_cols=17 Identities=24% Similarity=-0.124 Sum_probs=10.1
Q ss_pred HHhcCCHHHHHHHHHHH
Q 003937 592 CRVHKNLDLGKIAAEKL 608 (785)
Q Consensus 592 ~~~~g~~~~a~~~~~~~ 608 (785)
+.+.++++.|...++-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44556666666666643
No 264
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.62 E-value=9.9 Score=34.34 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=37.1
Q ss_pred cHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhc
Q 003937 244 TWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTE 308 (785)
Q Consensus 244 ~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g 308 (785)
.+..++..+...|++-+|+++.+.. .. .+...-..++.+..+.+|...--.++....+.+
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~-~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQY-HK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHc-CC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4556677788888888888887764 21 222233456666666666666666666555543
No 265
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.48 E-value=6.8 Score=39.54 Aligned_cols=92 Identities=15% Similarity=0.282 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcccC------CChhHHHHHHHHHHHcCC----hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhccCC-
Q 003937 463 INAARRVFNLIHWR------QETVSWTSMIVALAQHGL----GEEAIQLFERMLELGIKPDHI--TYVGVLTACTHGGL- 529 (785)
Q Consensus 463 ~~~A~~~~~~~~~~------p~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~- 529 (785)
...|..+|+.|+.+ ++-.++..|+.. ..++ .+.+...|+.+.+.|+..+.. +...++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 34566667666532 345555555544 2222 356777888888888777543 44444444433332
Q ss_pred -HHHHHHHHHHhhhcCCCCCCchhHHHHH
Q 003937 530 -VEQGQRYYNMMKNVHKIKPTPSHFASMV 557 (785)
Q Consensus 530 -~~~a~~~~~~m~~~~~~~p~~~~~~~li 557 (785)
+.++.++++.+.+ .|+++...+|..+.
T Consensus 197 ~v~r~~~l~~~l~~-~~~kik~~~yp~lG 224 (297)
T PF13170_consen 197 KVARVIELYNALKK-NGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHH-cCCccccccccHHH
Confidence 3477788888876 68888888776553
No 266
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.36 E-value=0.54 Score=29.92 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 618 AYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 618 ~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
++..|+++|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788899999999999999998854
No 267
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.06 E-value=0.14 Score=45.52 Aligned_cols=84 Identities=12% Similarity=0.079 Sum_probs=54.4
Q ss_pred HHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 003937 151 VLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLA 230 (785)
Q Consensus 151 ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 230 (785)
++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.+...++++.... .....++..+.+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 4566666777777777788887776566778888888888888777788777774432 3334455555555555555
Q ss_pred HHHhhhc
Q 003937 231 RAQFDQM 237 (785)
Q Consensus 231 ~~l~~~~ 237 (785)
.-++.++
T Consensus 90 ~~Ly~~~ 96 (143)
T PF00637_consen 90 VYLYSKL 96 (143)
T ss_dssp HHHHHCC
T ss_pred HHHHHHc
Confidence 5555544
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.85 E-value=9.3 Score=33.33 Aligned_cols=112 Identities=16% Similarity=0.104 Sum_probs=62.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc
Q 003937 487 VALAQHGLGEEAIQLFERMLELGIKPD---HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA 563 (785)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 563 (785)
....+.|++++|.+.|+.+... .+.. ...-..++.++.+.|++++|...++...+.+.-.|++ .|.....+++.-
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v-dYa~Y~~gL~~~ 95 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV-DYAYYMRGLSYY 95 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc-cHHHHHHHHHHH
Confidence 3345567788888888777764 2221 2345566677777777887777777777644444443 244444443322
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 564 GLLQEAYNFIENM-PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 564 g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
...+.+ |..+ ..+. ..+....|...|++++..-|++.
T Consensus 96 ~~~~~~---~~~~~~~dr-------------D~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEGS---LQSFFRSDR-------------DPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhhH---Hhhhccccc-------------CcHHHHHHHHHHHHHHHHCcCCh
Confidence 222211 1111 1111 12234578888888888888654
No 269
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=89.61 E-value=21 Score=34.57 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=96.3
Q ss_pred HhcCCHHHHHHHHHhcccC-C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhc---c
Q 003937 458 SKAGNINAARRVFNLIHWR-Q-E---TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH--ITYVGVLTACTH---G 527 (785)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~~-p-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~---~ 527 (785)
.+.|++++|.+.|+.+..+ | + ..+--.++-++-+.+++++|+..+++.... -|+. +-|...|.+.+. .
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~n~dY~~YlkgLs~~~~i 122 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHPNADYAYYLKGLSYFFQI 122 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCCChhHHHHHHHHHHhccC
Confidence 4578888998888888643 2 2 223344556677888899999988888773 3332 344444444432 1
Q ss_pred ----CCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHH
Q 003937 528 ----GLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAW--GSLLSACRVHKNLDLG 601 (785)
Q Consensus 528 ----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~--~~ll~~~~~~g~~~~a 601 (785)
.+...+.+-+..+.+...--|+.. -...|..-+.... |.... .++..-|.+.|.+.-|
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ryPnS~-------------Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRYPNSR-------------YAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHCCCCc-------------chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHHH
Confidence 122223333322221101112221 1112221111110 11111 1334457889999999
Q ss_pred HHHHHHHHhhCCCCch---hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 602 KIAAEKLLLIEPDNSG---AYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 602 ~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
..-++.+++.-|+.+. .+..|..+|.+.|..++|.+.-+-+..
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9999999987665443 566678889999999999988776654
No 270
>PRK15331 chaperone protein SicA; Provisional
Probab=89.24 E-value=2.4 Score=37.87 Aligned_cols=85 Identities=9% Similarity=0.054 Sum_probs=48.4
Q ss_pred HHhcCCHHHHHHHHHhcc--cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 003937 457 YSKAGNINAARRVFNLIH--WRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQ 534 (785)
Q Consensus 457 y~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 534 (785)
+...|++++|..+|.-+. ..-+..-|..|..++-..+++++|+..|......+ .-|...+-....++...|+.+.|+
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHH
Confidence 345667777777766543 12244456666666666667777777666655432 122233444455666666666666
Q ss_pred HHHHHhhh
Q 003937 535 RYYNMMKN 542 (785)
Q Consensus 535 ~~~~~m~~ 542 (785)
..|.....
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 66666554
No 271
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.19 E-value=15 Score=32.73 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=50.9
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCch-hHHHHHHHHhhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPS-HFASMVDLLGRAGLLQEAYNFIENMP-LEPDVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~ 600 (785)
.-...++.+++..++..+.- +.|... .-..-...+.+.|++.+|..+|+++. -.|....-.+|+..|-....-..
T Consensus 19 ~al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred HHHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH
Confidence 33455677777777766653 344422 22223345567788888888888773 23444444566666665554455
Q ss_pred HHHHHHHHHhhCC
Q 003937 601 GKIAAEKLLLIEP 613 (785)
Q Consensus 601 a~~~~~~~~~~~p 613 (785)
-....+++++..|
T Consensus 96 Wr~~A~evle~~~ 108 (160)
T PF09613_consen 96 WRRYADEVLESGA 108 (160)
T ss_pred HHHHHHHHHhcCC
Confidence 5566666666555
No 272
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.09 E-value=1.9 Score=42.47 Aligned_cols=62 Identities=23% Similarity=0.206 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 583 VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
.++..++..+...|+.+.+...++++++.+|-+...|..|+.+|...|+...|+..++.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34556677777888888888899999999998888999999999999999999998888864
No 273
>PRK09687 putative lyase; Provisional
Probab=89.07 E-value=27 Score=35.08 Aligned_cols=120 Identities=10% Similarity=0.071 Sum_probs=53.4
Q ss_pred CCCChhhHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCCh----hHHHHHHHHhHHCCCCCChhhHHH
Q 003937 75 PVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRF----KNAIRMFVEMVQDQVLPTQFTVTS 150 (785)
Q Consensus 75 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~t~~~ 150 (785)
..+|....-..+.++...|..+....+..-...+|...-...+.++.+.|+. .+++..+..+... .|+...-..
T Consensus 33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~ 110 (280)
T PRK09687 33 DDHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRAS 110 (280)
T ss_pred hCCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence 3444444445555555555433333333323344555555555666666653 3455555555322 344444444
Q ss_pred HHHHHhccCChh--HHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCh
Q 003937 151 VLASCTALGDLS--AGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDE 196 (785)
Q Consensus 151 ll~~~~~~g~~~--~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~ 196 (785)
.+.+++..+.-. ....+...+...-..++..+--..+.++++.|+.
T Consensus 111 A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~ 158 (280)
T PRK09687 111 AINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDE 158 (280)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCH
Confidence 444444433211 0112222222222234555555556666555553
No 274
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.94 E-value=1.3 Score=39.19 Aligned_cols=129 Identities=12% Similarity=0.133 Sum_probs=83.0
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccCChhH
Q 003937 18 HLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDL 97 (785)
Q Consensus 18 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 97 (785)
.+++.+...+.+......++.+...+...+....+.++..|++.+..+...+++..... +-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35667777888999999999999888778899999999999999888888888874332 444566666667777777
Q ss_pred HHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCC
Q 003937 98 ACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGD 160 (785)
Q Consensus 98 A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 160 (785)
|.-++.++...+.. +..+...++++.|++.+.+ .++...|..+++.|...+.
T Consensus 89 a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCc
Confidence 66666655432111 1112233444444433222 2356677777777765554
No 275
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.94 E-value=3.7 Score=39.85 Aligned_cols=49 Identities=18% Similarity=0.162 Sum_probs=21.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 492 HGLGEEAIQLFERMLELGIKPDH----ITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 492 ~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
.|++.+|...|...++. -|+. ..+--|..++...|++++|..+|..+.+
T Consensus 154 sgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 154 SGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred cCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 34455555555555542 2221 1223344444445555555555444444
No 276
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.93 E-value=13 Score=37.52 Aligned_cols=128 Identities=16% Similarity=0.057 Sum_probs=76.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHhhccCCHHHHHHHHHHhh---hcCCCCCCchhHHH
Q 003937 484 SMIVALAQHGLGEEAIQLFERMLELGIKP-D----HITYVGVLTACTHGGLVEQGQRYYNMMK---NVHKIKPTPSHFAS 555 (785)
Q Consensus 484 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~~~~ 555 (785)
+|..++...+.++++++.|+...+---.. | ...+..+.+.+....++++|.-+..+.. +.+++..-..-|.+
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 35556666667888888887766521111 1 2367777777888888887776654432 22333333333333
Q ss_pred H-----HHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 556 M-----VDLLGRAGLLQEAYNFIENM-------PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 556 l-----i~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
+ .-+|...|++.+|.+.-++. +-+| ..-....+.+.|+..|+.|.|..-|+++...
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 3 33455666666666555543 3222 1334556777789999999988888887653
No 277
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.64 E-value=48 Score=37.63 Aligned_cols=87 Identities=17% Similarity=0.100 Sum_probs=40.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHh---c
Q 003937 385 VGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSG-EASSLSVSNALITMYSK---A 460 (785)
Q Consensus 385 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~---~ 460 (785)
..+.-.|+++.|++.+.+ ..+...|.+.+...+..+.-..-.+... ..+.... -.+...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 345567899999988776 2344556666666665543332222211 2221111 01111345667777775 4
Q ss_pred CCHHHHHHHHHhcccC
Q 003937 461 GNINAARRVFNLIHWR 476 (785)
Q Consensus 461 g~~~~A~~~~~~~~~~ 476 (785)
.++.+|.+.|--+...
T Consensus 341 td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 341 TDPREALQYLYLICLF 356 (613)
T ss_dssp T-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHHc
Confidence 5777788777766543
No 278
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=88.51 E-value=3.3 Score=34.98 Aligned_cols=53 Identities=26% Similarity=0.243 Sum_probs=31.9
Q ss_pred HHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 488 ALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 488 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
+++..|+.+.|++.|.+.+. +-| +...|+.-..++.-.|+.++|..-+++..+
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 45556666666666666665 343 334666666666666666666666655554
No 279
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.39 E-value=0.87 Score=28.29 Aligned_cols=31 Identities=23% Similarity=0.150 Sum_probs=23.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
+|..+...+...|+.++|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4666667777888888888888888887773
No 280
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.19 E-value=19 Score=32.53 Aligned_cols=134 Identities=11% Similarity=0.089 Sum_probs=87.3
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccC--ChhHHHHHHhhCCCCCc
Q 003937 33 KLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQG--RLDLACEVFNLMPNRDS 110 (785)
Q Consensus 33 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~f~~m~~~~~ 110 (785)
.+....+.+.+++|+..++..+++.+.+.|.+.....+...-.-+|...-...+-.+.... -..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~---- 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG---- 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----
Confidence 3455666778999999999999999999999988888877655455444443333322211 1344555555543
Q ss_pred cHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 003937 111 VSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKT 174 (785)
Q Consensus 111 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 174 (785)
..+..++..+...|++-+|+++...... .+......++.+..+.+|...--.++......
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2467788888899999999998877532 12223355667766666666555555555543
No 281
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.19 E-value=35 Score=36.42 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=41.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CH-HHHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 483 TSMIVALAQHGLGEEAIQLFERMLELGIKP-DH-ITYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
..+..+.-+.|+.++|++.|++|.+.. ++ |. .....|+.++...+.+.++..++.+-.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 345566677888888888888887642 22 22 356677888888888888888887653
No 282
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.82 E-value=3.6 Score=35.93 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=45.8
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003937 594 VHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 594 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 647 (785)
..++.++++.+++.+.-+.|+.+..-..-++++...|+|+||.++++...+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC
Confidence 478888888888888888998888888888888899999999999998877654
No 283
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.63 E-value=5.1 Score=39.53 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 003937 448 SVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLE-----LGIKPDHITYVGV 520 (785)
Q Consensus 448 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~t~~~l 520 (785)
.++..++..+..+|+.+.+.+.++++... -|...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 44577888899999999999999887533 3778899999999999999999999998875 5788877766555
Q ss_pred HHH
Q 003937 521 LTA 523 (785)
Q Consensus 521 l~a 523 (785)
..+
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
No 284
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.52 E-value=29 Score=33.64 Aligned_cols=170 Identities=18% Similarity=0.213 Sum_probs=84.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC------CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCHhhHHHHHHHHhcc-
Q 003937 354 DGYIKIGDIGPARRIFDSLRDR------DVVAWTAMLVGYEQNGLNKDAVELFRSMVREG-PKPNNYTLSAMLSVSSSL- 425 (785)
Q Consensus 354 ~~~~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~~~- 425 (785)
..-.+.|++++|.+.|+.+..+ ...+--.++-++-+.+++++|+..+++..+.- -.|| .-|..-|.+.+..
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs~~~ 120 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLSYFF 120 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHHHhc
Confidence 3344555677777777666542 12233345566777888888888877766542 2332 3344444443321
Q ss_pred ------CchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhH-HH-HHHHHHHHcCChHH
Q 003937 426 ------ASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVS-WT-SMIVALAQHGLGEE 497 (785)
Q Consensus 426 ------~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~-~~-~li~~~~~~g~~~~ 497 (785)
.+...+++.+..+.. +|.-|=.+.-..+|......+. |... ++ .+..-|.+.|.+..
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~~A 185 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAYVA 185 (254)
T ss_pred cCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcChHH
Confidence 122222222222211 1111111111122222221111 1111 11 23455788888888
Q ss_pred HHHHHHHHHHCCCCCCH-H---HHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 498 AIQLFERMLELGIKPDH-I---TYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 498 A~~~~~~m~~~g~~p~~-~---t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
|..-+++|++. -|+. . .+-.+..+|...|..++|...-.-+.
T Consensus 186 A~nR~~~v~e~--y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 186 AINRFEEVLEN--YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHhc--cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 88888888885 3332 2 45556667777888887777665554
No 285
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.51 E-value=1 Score=28.58 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
+|+.|...|.+.|++++|+.++++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886554
No 286
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=87.27 E-value=18 Score=30.96 Aligned_cols=59 Identities=8% Similarity=0.081 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 483 TSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
..-+..+...|+-+.--+++.++.+. -+|++.....+..||.+.|+..++.+++.+.-+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 33445555666666666666665542 355666666666666666666666666666654
No 287
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.23 E-value=1.9 Score=28.91 Aligned_cols=33 Identities=30% Similarity=0.558 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI 515 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 515 (785)
+|..+...|...|++++|+++|++.++ ..|+..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 456666777777777777777777777 456543
No 288
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=87.22 E-value=50 Score=36.08 Aligned_cols=181 Identities=13% Similarity=0.074 Sum_probs=108.8
Q ss_pred chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 003937 345 NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRD---VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSV 421 (785)
Q Consensus 345 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 421 (785)
+..+|...+.--.+.|+.+...-+|++..-|- ...|--.+.-.-..|+.+-|-.++..-.+--++-.+.+-..--..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 56788889999999999999999999887652 234544444444558888887777665554333222222222223
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHH---HHHHhcc-cCCChhHHHHHHHH-----HHHc
Q 003937 422 SSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAAR---RVFNLIH-WRQETVSWTSMIVA-----LAQH 492 (785)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~---~~~~~~~-~~p~~~~~~~li~~-----~~~~ 492 (785)
+-..|+...|+.+++.+...- +.-+.+-.--+.+..+.|+.+.+. +++.... .+-+....+.+.-- +.-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 455678888888888887765 333333344456667778888777 4443332 11122223333222 2345
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 003937 493 GLGEEAIQLFERMLELGIKPDHITYVGVLTACTHG 527 (785)
Q Consensus 493 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 527 (785)
++.+.|..++.+|.+. ++++..-|..++.-+...
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~ 488 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFELIQ 488 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhC
Confidence 6778888888888773 344455666666654433
No 289
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.90 E-value=75 Score=37.81 Aligned_cols=80 Identities=15% Similarity=0.054 Sum_probs=41.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCH
Q 003937 487 VALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLL 566 (785)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (785)
.-+...+.+++|.-.|+..-+ ..-.+.++...|+|++|..+..++.. +-.--..+-..|+.-+...++.
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh 1015 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKH 1015 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccc
Confidence 333445556666555544322 12245566666777777666665542 1111122334566666666666
Q ss_pred HHHHHHHHhCC
Q 003937 567 QEAYNFIENMP 577 (785)
Q Consensus 567 ~~A~~~~~~~~ 577 (785)
-+|-++..+..
T Consensus 1016 ~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1016 YEAAKILLEYL 1026 (1265)
T ss_pred hhHHHHHHHHh
Confidence 66666665553
No 290
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=86.90 E-value=4.2 Score=36.17 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=39.3
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
..+++.+.++.++..+.-+.|..+..-..-++.+...|+|.+|.++++.+.+.+
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 456677777777777777777777766677777777777777777777776544
No 291
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=86.89 E-value=16 Score=36.91 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=52.8
Q ss_pred CHHHHHHHHHhcCC-------CCHhHHHHHHHHHHHcCC----hhHHHHHHHHHHHcCCCCCHh--hHHHHHHHHhccCc
Q 003937 361 DIGPARRIFDSLRD-------RDVVAWTAMLVGYEQNGL----NKDAVELFRSMVREGPKPNNY--TLSAMLSVSSSLAS 427 (785)
Q Consensus 361 ~~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~~~ 427 (785)
....|..+|+.|.+ ++-.++..++.. ..++ .+++..+|+.+...|+..+.. ..+.+|..+.....
T Consensus 118 ~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~ 195 (297)
T PF13170_consen 118 IIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQ 195 (297)
T ss_pred HHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccch
Confidence 45556666666654 233445555443 2222 245677788888877766433 33344443332222
Q ss_pred --hHHHHHHHHHHHHhCCCCchHHHHHHH
Q 003937 428 --LDHGKQIHASALRSGEASSLSVSNALI 454 (785)
Q Consensus 428 --~~~a~~~~~~~~~~g~~~~~~~~~~li 454 (785)
...+..++..+.+.|+++....|..+.
T Consensus 196 ~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 196 EKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 446777888888888887776665443
No 292
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.34 E-value=45 Score=34.72 Aligned_cols=148 Identities=11% Similarity=0.038 Sum_probs=76.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC--chh
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP---DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT--PSH 552 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~ 552 (785)
...+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+..+|...++...+. .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 45568888888888888888888888887643221 2223333444556677778888877766541 11111 111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 553 FASMVDLLGRAGLLQEAYNF-IENMPLEPDVVAWGSLLSACRV------HKNLDLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
...+...+.. ..+..... ........-...+..+...+.. .+..+.+...+..+.++.|.....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 0000000001223233333333 3778889999999999999777777766666
Q ss_pred HHh
Q 003937 626 YSS 628 (785)
Q Consensus 626 ~~~ 628 (785)
+.+
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 543
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.26 E-value=1.6 Score=27.06 Aligned_cols=32 Identities=34% Similarity=0.480 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD 513 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 513 (785)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 3567777777777888888888777776 4554
No 294
>PRK09687 putative lyase; Provisional
Probab=86.12 E-value=40 Score=33.85 Aligned_cols=49 Identities=6% Similarity=0.139 Sum_probs=22.4
Q ss_pred CCCHhHHHHHHHHHHHcCCh----hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 003937 374 DRDVVAWTAMLVGYEQNGLN----KDAVELFRSMVREGPKPNNYTLSAMLSVSSS 424 (785)
Q Consensus 374 ~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 424 (785)
.+|...-...+.++.+.|+. .+++.++..+... .|+...-...+.++..
T Consensus 65 ~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~ 117 (280)
T PRK09687 65 SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGH 117 (280)
T ss_pred CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhc
Confidence 34444444455555555543 3455555555332 3444444444444433
No 295
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.90 E-value=3.5 Score=37.72 Aligned_cols=88 Identities=15% Similarity=0.116 Sum_probs=65.0
Q ss_pred HHhhcCCHHHHHHHHHhC-C-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 559 LLGRAGLLQEAYNFIENM-P-LEPD-----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~-~-~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
-+.+.|++++|..-+... . ++|. .+.|..-..+..+.+..+.|+....+++++.|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 355677777777666554 1 1111 33444445556788889999999999999999777777777889999999
Q ss_pred hHHHHHHHHHHHhCC
Q 003937 632 WEDAANIRKSMKYVG 646 (785)
Q Consensus 632 ~~~a~~~~~~m~~~g 646 (785)
+++|..-++++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999887653
No 296
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.93 E-value=11 Score=34.71 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCC--CC----chh
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI--TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIK--PT----PSH 552 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p~----~~~ 552 (785)
.+..+..-|++.|+.++|++.|.++.+....|... .+..++..+...+++..+.....+......-. ++ ...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45566666777777777777777776655555543 45566666666677777666666554311111 11 122
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 003937 553 FASMVDLLGRAGLLQEAYNFIENM 576 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~~~~~ 576 (785)
|..|. +...|++.+|-+.|-+.
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHcc
Confidence 22222 23456777777777665
No 297
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.10 E-value=8.9 Score=37.84 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=71.9
Q ss_pred hCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCC--------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC
Q 003937 441 SGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQE--------TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP 512 (785)
Q Consensus 441 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 512 (785)
.|.+....+...+++.-....+++++...+-++...|+ .++|-.+ +-.-++++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl----llky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL----LLKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH----HHccChHHHHHHHhCcchhcccc
Confidence 35555566666777777777788888888877764432 2233322 23346778999988888899999
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 513 DHITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 513 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
|..|++.+++.+.+.+++.+|.++...|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999988888776654
No 298
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.81 E-value=14 Score=33.99 Aligned_cols=94 Identities=18% Similarity=0.122 Sum_probs=61.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCh--hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCC-Chh------H
Q 003937 112 SWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQ--FTVTSVLASCTALGDLSAGKKVHSFVVKTGLSG-CVN------V 182 (785)
Q Consensus 112 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~------~ 182 (785)
.+..+...|.+.|+.++|++.|.++.+....|.. ..+..+|+.+...+++..+......+...--.+ |.. +
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 5777788888888888888888888776555543 356677777888888888777776665543221 222 2
Q ss_pred HHHHHHHHHhCCChHHHHHHHhcCC
Q 003937 183 TNSLLNMYAKVGDEMMAKAVFDGMR 207 (785)
Q Consensus 183 ~~~li~~~~~~g~~~~A~~~~~~m~ 207 (785)
|..|.. ...+++..|-+.|-+..
T Consensus 118 ~~gL~~--l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLAN--LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHH--HHhchHHHHHHHHHccC
Confidence 222222 23578888887776665
No 299
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.21 E-value=19 Score=32.44 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHhcCCCCHhHHHHHH-----HHHHHcCChhHHHHHHHHHHHc
Q 003937 360 GDIGPARRIFDSLRDRDVVAWTAML-----VGYEQNGLNKDAVELFRSMVRE 406 (785)
Q Consensus 360 g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~ 406 (785)
+..++|..-|..+.+.+.-.|-.|. ....+.|+...|...|.+.-..
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 3455555555555544333333221 2344555666666666655443
No 300
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.12 E-value=19 Score=33.23 Aligned_cols=89 Identities=11% Similarity=0.076 Sum_probs=67.1
Q ss_pred HHHHHHhcCChHHHHHHHHHhCCCCC----chHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhH--HHHHHHHHHHcCC
Q 003937 319 LISCYAKVGGVEIAQKIVEQSGISYL----NVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVA--WTAMLVGYEQNGL 392 (785)
Q Consensus 319 li~~y~~~g~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~ 392 (785)
+...+..+|++++|...++.....+. ...+-..|.+...+.|.+++|.+.++...+++-.+ ...--+.+...|+
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~ 174 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc
Confidence 45567888999999988887554333 33455667888889999999999999888775443 3333467888999
Q ss_pred hhHHHHHHHHHHHcC
Q 003937 393 NKDAVELFRSMVREG 407 (785)
Q Consensus 393 ~~~A~~~~~~m~~~g 407 (785)
-++|..-|.+.++.+
T Consensus 175 k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 175 KQEARAAYEKALESD 189 (207)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999999888875
No 301
>PRK11619 lytic murein transglycosylase; Provisional
Probab=81.87 E-value=1e+02 Score=35.23 Aligned_cols=211 Identities=10% Similarity=-0.020 Sum_probs=92.1
Q ss_pred hHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003937 329 VEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDR---DVVAWTAMLVGYEQNGLNKDAVELFRSMVR 405 (785)
Q Consensus 329 ~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 405 (785)
..+|...++.......+......-+..-...++++.+...+..|+.. ...-.--+..++...|+.++|...|++...
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 34445555543333223333333344444566666666666666531 122223344555556777777777776532
Q ss_pred cCCCCCHhhHHHHHHHHhccCch-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHH
Q 003937 406 EGPKPNNYTLSAMLSVSSSLASL-DHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTS 484 (785)
Q Consensus 406 ~g~~p~~~t~~~ll~a~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~ 484 (785)
. . +|-.++.+- +.|.. ......... ....+..+.. -.-+..+...|....|...+..+....+....-.
T Consensus 375 ~---~---~fYG~LAa~-~Lg~~~~~~~~~~~~-~~~~~~~~~~--~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~ 444 (644)
T PRK11619 375 Q---R---GFYPMVAAQ-RLGEEYPLKIDKAPK-PDSALTQGPE--MARVRELMYWNMDNTARSEWANLVASRSKTEQAQ 444 (644)
T ss_pred C---C---CcHHHHHHH-HcCCCCCCCCCCCCc-hhhhhccChH--HHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 1 1 222222211 11110 000000000 0000010111 1223445566777777777766554445444545
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC----CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchh
Q 003937 485 MIVALAQHGLGEEAIQLFERMLELG----IKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSH 552 (785)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 552 (785)
+.....+.|.++.++.........+ --|- .|...+...+..-.++.+.- +.-+.+..++.|+...
T Consensus 445 la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~--~~~~~~~~~a~~~~v~~~lv-~ai~rqES~f~p~a~S 513 (644)
T PRK11619 445 LARYAFNQQWWDLSVQATIAGKLWDHLEERFPL--AWNDEFRRYTSGKGIPQSYA-MAIARQESAWNPKARS 513 (644)
T ss_pred HHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCc--chHHHHHHHHHHcCCCHHHH-HHHHHHhcCCCCCCcc
Confidence 5555556677777666554322210 0111 24555555554444454432 2233333466666443
No 302
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=81.49 E-value=62 Score=32.48 Aligned_cols=25 Identities=16% Similarity=0.068 Sum_probs=14.2
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc
Q 003937 382 AMLVGYEQNGLNKDAVELFRSMVRE 406 (785)
Q Consensus 382 ~li~~~~~~g~~~~A~~~~~~m~~~ 406 (785)
.-+..+.+.++.+++.+.+.+|...
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHh
Confidence 3344444456666666666666654
No 303
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=81.37 E-value=60 Score=32.24 Aligned_cols=114 Identities=15% Similarity=0.137 Sum_probs=62.5
Q ss_pred hccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHH---HHHHHHHcCChHHHH
Q 003937 423 SSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTS---MIVALAQHGLGEEAI 499 (785)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~---li~~~~~~g~~~~A~ 499 (785)
...++...+..+++.+....-.. ....-.|...|...|+.+.|..++..++..-...-|-. -|..+.+.....+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~-~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~ 223 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPEN-SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQ 223 (304)
T ss_pred hhccchhhHHHHHHHHHHhCccc-chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHH
Confidence 34455555666555555543222 33335677888889999999999998875422222222 233333333333333
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHh
Q 003937 500 QLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMM 540 (785)
Q Consensus 500 ~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m 540 (785)
.+-++.-. .|+ ...-..+...+...|+.++|.+.+-.+
T Consensus 224 ~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~ 262 (304)
T COG3118 224 DLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLAL 262 (304)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33333332 453 334455666777778888777654443
No 304
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=81.20 E-value=73 Score=33.13 Aligned_cols=65 Identities=17% Similarity=0.235 Sum_probs=54.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC----CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 581 DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD----NSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 581 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...+|..+...++++|+++.|...+.++....+. .+.....-+......|+-++|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999886522 4567777789999999999999998888763
No 305
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=80.38 E-value=3.9 Score=25.15 Aligned_cols=27 Identities=44% Similarity=0.549 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLE 507 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 507 (785)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455566667777777777777777666
No 306
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=80.27 E-value=26 Score=28.28 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHH
Q 003937 51 KNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAI 130 (785)
Q Consensus 51 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~ 130 (785)
-|++.+.+...++.+++..+ .-++.+...|++++|..+.+.+..||...|-+|-. .+.|..+++.
T Consensus 24 A~tIAdwL~~~~~~~E~v~l-------------IRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~ 88 (115)
T TIGR02508 24 ANTIADWLHLKGESEEAVQL-------------IRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALE 88 (115)
T ss_pred HHHHHHHHhcCCchHHHHHH-------------HHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHH
Confidence 34455555555544444433 23456778999999999999999999999988755 3567777777
Q ss_pred HHHHHhHHCCCCCChhhHH
Q 003937 131 RMFVEMVQDQVLPTQFTVT 149 (785)
Q Consensus 131 ~~~~~m~~~g~~p~~~t~~ 149 (785)
.-+.+|-.+| .|...+|.
T Consensus 89 ~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 89 SRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 7777777766 45544443
No 307
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.22 E-value=2e+02 Score=37.48 Aligned_cols=309 Identities=14% Similarity=0.106 Sum_probs=160.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHh----CCCCCchHhHHHHHHHHHhcCCHHHHHHHHH-hcCCCCHhHHHHHHHHHHHcCC
Q 003937 318 ALISCYAKVGGVEIAQKIVEQS----GISYLNVIAFTTLLDGYIKIGDIGPARRIFD-SLRDRDVVAWTAMLVGYEQNGL 392 (785)
Q Consensus 318 ~li~~y~~~g~~~~A~~~~~~~----~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~-~~~~~~~~~~~~li~~~~~~g~ 392 (785)
.|..+-.+|+.+.+|...+++- ........-+..+...|..-++.|...-+.. +..+++. ..-|.-....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 4455666777788888777773 1111133344445556777777776666655 2333332 224555667788
Q ss_pred hhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHH-HHHHHHhcCCHHHHHHHH
Q 003937 393 NKDAVELFRSMVREGPKPN-NYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNA-LITMYSKAGNINAARRVF 470 (785)
Q Consensus 393 ~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~-li~~y~~~g~~~~A~~~~ 470 (785)
+..|...|+.+.+. .|+ ..+++.++......+.++...-..+..... ..+...-++. =+.+--+.++++.-....
T Consensus 1465 ~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 88999999988765 344 566777776666666666555433333222 1222222222 223334555555555444
Q ss_pred HhcccCCChhHHHHH-HH-HHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHH---------
Q 003937 471 NLIHWRQETVSWTSM-IV-ALAQHG--LGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYY--------- 537 (785)
Q Consensus 471 ~~~~~~p~~~~~~~l-i~-~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~--------- 537 (785)
. .+ +..+|.+. +. .+.+.. +.-.-.+..+.+++.-+.| +.+|+..|.+..+.++.
T Consensus 1542 ~---~~-n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~el 1609 (2382)
T KOG0890|consen 1542 S---DR-NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLEL 1609 (2382)
T ss_pred h---cc-cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHHH
Confidence 4 22 55566554 22 222221 1111112333333321111 12222222222221111
Q ss_pred -HHhhhcCCCCCCchhHH-H--HHHHHhhcCCHHHHHHHH---Hh----CCCCCC-----HHHHHHHHHHHHhcCCHHHH
Q 003937 538 -NMMKNVHKIKPTPSHFA-S--MVDLLGRAGLLQEAYNFI---EN----MPLEPD-----VVAWGSLLSACRVHKNLDLG 601 (785)
Q Consensus 538 -~~m~~~~~~~p~~~~~~-~--li~~~~~~g~~~~A~~~~---~~----~~~~p~-----~~~~~~ll~~~~~~g~~~~a 601 (785)
.......++.++..+.+ . -..-+.+.+....+.+-+ ++ ...+|+ ..+|......++..|+++.|
T Consensus 1610 ~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1610 ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 11111123333322111 1 011111222111122211 11 112322 45898999999999999999
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 602 KIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 602 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
....-.+.+..+ +..+.-.+......|+-..|..++++-.+..
T Consensus 1690 ~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1690 QNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 998888877664 5688889999999999999999999887543
No 308
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.91 E-value=59 Score=31.25 Aligned_cols=160 Identities=14% Similarity=0.096 Sum_probs=80.1
Q ss_pred HHHHHHHHHhcCCCC--HhHHHHHHHHHHHcCChhHHHHHHHHHHH--cCCCCCHh--hHHHHHHHHhccCchHHHHHHH
Q 003937 362 IGPARRIFDSLRDRD--VVAWTAMLVGYEQNGLNKDAVELFRSMVR--EGPKPNNY--TLSAMLSVSSSLASLDHGKQIH 435 (785)
Q Consensus 362 ~~~A~~~f~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~--t~~~ll~a~~~~~~~~~a~~~~ 435 (785)
++.|..+.+++..-+ +..|+--...|.++|.++-|-..+.+.-+ .+++|+.. .|..-+......++...+.+++
T Consensus 74 yEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~ 153 (308)
T KOG1585|consen 74 YEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY 153 (308)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 344444444444322 23455566777788877766655554322 23555532 2333333333333333333333
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc-------cCCCh-hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003937 436 ASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIH-------WRQET-VSWTSMIVALAQHGLGEEAIQLFERMLE 507 (785)
Q Consensus 436 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~ 507 (785)
..+-..|.+...+++|-..|.+-. .-|+. ..|-+.|-.|....++..|...++.--+
T Consensus 154 ---------------gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 154 ---------------GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred ---------------HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhc
Confidence 233344555566666655554322 11122 2244455556666677778877777544
Q ss_pred CC--CCC-CHHHHHHHHHHhhccCCHHHHHHHH
Q 003937 508 LG--IKP-DHITYVGVLTACTHGGLVEQGQRYY 537 (785)
Q Consensus 508 ~g--~~p-~~~t~~~ll~a~~~~g~~~~a~~~~ 537 (785)
.+ ..| |..+...||.+|- .|+.++...++
T Consensus 219 ip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 219 IPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred CccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 22 222 2346777776664 46666655554
No 309
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=79.80 E-value=4.1 Score=40.44 Aligned_cols=110 Identities=17% Similarity=0.125 Sum_probs=75.5
Q ss_pred HHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 003937 522 TACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNL 598 (785)
Q Consensus 522 ~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 598 (785)
+-|.+.|.+++|+..|..... +.| +..++..-..+|.+..++..|+.-.... .+.. -...|..-..+=...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 568889999999999987653 456 7777777788899999888777655443 1111 123444444444566889
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHH
Q 003937 599 DLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANI 638 (785)
Q Consensus 599 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 638 (785)
.+|.+-++.+++++|++.. |-..|++.....|+.-+
T Consensus 182 ~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIE----LKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhhHH
Confidence 9999999999999997543 44555555555554433
No 310
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=79.65 E-value=2.7 Score=24.30 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHH
Q 003937 617 GAYSALCNLYSSCGKWEDAANIRK 640 (785)
Q Consensus 617 ~~~~~l~~~~~~~g~~~~a~~~~~ 640 (785)
.....++.++...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 355678888888888888888765
No 311
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.51 E-value=3.4 Score=26.88 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 617 GAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 617 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
.++..|+..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678899999999999999999988754
No 312
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=79.40 E-value=1.6 Score=27.32 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=13.8
Q ss_pred chHhHHHHHHHHHhcCCHHHHH
Q 003937 345 NVIAFTTLLDGYIKIGDIGPAR 366 (785)
Q Consensus 345 ~~~~~~~li~~~~~~g~~~~A~ 366 (785)
+..+|+.+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5566666666666666666654
No 313
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=78.44 E-value=60 Score=30.54 Aligned_cols=177 Identities=19% Similarity=0.159 Sum_probs=102.9
Q ss_pred CCHHHHHHHHHhc-ccCCC-hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHH
Q 003937 461 GNINAARRVFNLI-HWRQE-TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYY 537 (785)
Q Consensus 461 g~~~~A~~~~~~~-~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~ 537 (785)
|-..-|+-=|.+. ..+|+ +..||-+.--+...|+++.|.+.|+...+ +.|.- .+...-.-++.-.|++.-|.+-+
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhhHHHH
Confidence 4444444444432 23444 44577777778889999999999999888 45543 23333333566678888888776
Q ss_pred HHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--
Q 003937 538 NMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNF-IENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD-- 614 (785)
Q Consensus 538 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~-- 614 (785)
...-+...-.|-...|-.++ .+.-+..+|..- .++.. .-|..-|+.-|-.+.-.. +. -+.+++++.+-..+
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yLgk-iS-~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYLGK-IS-EETLMERLKADATDNT 230 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHHhh-cc-HHHHHHHHHhhccchH
Confidence 65544222233222222221 233456666543 34432 345566666555543221 11 12333344332222
Q ss_pred -----CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 615 -----NSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 615 -----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
-..||.-|+.-|...|..++|..+|+.....
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 2358899999999999999999999987654
No 314
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.37 E-value=12 Score=29.92 Aligned_cols=62 Identities=15% Similarity=0.221 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH
Q 003937 495 GEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD 558 (785)
Q Consensus 495 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 558 (785)
.-++.+-++.+....+-|++....+.+.||-+.+++.-|.++|+.++. ....+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~--K~~~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD--KCGAHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HccCchhhHHHHHH
Confidence 345666677777778899999999999999999999999999998874 33334556766654
No 315
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.76 E-value=13 Score=34.51 Aligned_cols=75 Identities=19% Similarity=0.211 Sum_probs=53.8
Q ss_pred hhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-C---CchhHHHHHHHHHhcCChHH
Q 003937 561 GRAGLLQEAYNFIENMPLEP--DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP-D---NSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 561 ~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p-~---~~~~~~~l~~~~~~~g~~~~ 634 (785)
.+.|+ ++|.+.|-++.-.| +....-.-+..|....|.++++.++-+++++.+ + |+..+.+|+++|.+.|+++.
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 34454 46777777763333 334444555566678889999999999998632 2 67889999999999999998
Q ss_pred HH
Q 003937 635 AA 636 (785)
Q Consensus 635 a~ 636 (785)
|-
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 74
No 316
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=77.52 E-value=61 Score=32.13 Aligned_cols=111 Identities=9% Similarity=0.047 Sum_probs=65.7
Q ss_pred hhHHHHHHhhCCC-----CCccHHHHHHHHHHh-CC-ChhHHHHHHHHhHH-CCCCCChhhHHHHHHHHhccCChhHHHH
Q 003937 95 LDLACEVFNLMPN-----RDSVSWTTIIVTYNE-IG-RFKNAIRMFVEMVQ-DQVLPTQFTVTSVLASCTALGDLSAGKK 166 (785)
Q Consensus 95 ~~~A~~~f~~m~~-----~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 166 (785)
+.+|.++|+.... .|...-..+++.... .+ ....-.++.+-+.. .|-.++..+...+|..++..+++..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 5677777773322 244444455555544 11 12222233333322 2456667777777777777777777777
Q ss_pred HHHHHHHh-CCCCChhHHHHHHHHHHhCCChHHHHHHHhc
Q 003937 167 VHSFVVKT-GLSGCVNVTNSLLNMYAKVGDEMMAKAVFDG 205 (785)
Q Consensus 167 ~~~~~~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 205 (785)
++...... +...|...|..+|+.....|+..-.+++.++
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 77766655 5566777777777777777777666666653
No 317
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=77.13 E-value=10 Score=30.62 Aligned_cols=60 Identities=12% Similarity=0.165 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH
Q 003937 497 EAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD 558 (785)
Q Consensus 497 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 558 (785)
+..+-++.+....+-|++....+.|.||.+.+++.-|.++|+.++.+ ..+....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K--~~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK--CGNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TTT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--ccChHHHHHHHHH
Confidence 45556666667778899999999999999999999999999988764 3344447777764
No 318
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=76.63 E-value=32 Score=28.62 Aligned_cols=65 Identities=17% Similarity=0.430 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHH
Q 003937 317 NALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDA 396 (785)
Q Consensus 317 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 396 (785)
++|+.+|... +......+++.-... ++++....+.+ ..-|..++.-|...|..++|
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N~C------------------~~~~~e~~L~~-----~~~~~eL~~lY~~kg~h~~A 58 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPNYC------------------DLEEVEEVLKE-----HGKYQELVDLYQGKGLHRKA 58 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCCcC------------------CHHHHHHHHHH-----cCCHHHHHHHHHccCccHHH
Confidence 5677777777 555444444432111 56666666643 23588999999999999999
Q ss_pred HHHHHHHHH
Q 003937 397 VELFRSMVR 405 (785)
Q Consensus 397 ~~~~~~m~~ 405 (785)
++++.+...
T Consensus 59 L~ll~~l~~ 67 (108)
T PF10366_consen 59 LELLKKLAD 67 (108)
T ss_pred HHHHHHHhc
Confidence 999999876
No 319
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.51 E-value=32 Score=30.26 Aligned_cols=50 Identities=18% Similarity=-0.009 Sum_probs=24.9
Q ss_pred cCChHHHHHHHHHhCCCCCchHh-HHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 003937 326 VGGVEIAQKIVEQSGISYLNVIA-FTTLLDGYIKIGDIGPARRIFDSLRDR 375 (785)
Q Consensus 326 ~g~~~~A~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~A~~~f~~~~~~ 375 (785)
.++.+++..+++-+..-.|+..- -..-.-.+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 55666666666555444432211 111223345556666666666666553
No 320
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.15 E-value=79 Score=30.71 Aligned_cols=230 Identities=16% Similarity=0.253 Sum_probs=128.2
Q ss_pred CHHHHHHHHHhcCC----C---CHhHHHHHHHHHHHcCChhHHHHHHHHHHHc---CC--CCCHhhHHHHHHHHhccCch
Q 003937 361 DIGPARRIFDSLRD----R---DVVAWTAMLVGYEQNGLNKDAVELFRSMVRE---GP--KPNNYTLSAMLSVSSSLASL 428 (785)
Q Consensus 361 ~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~--~p~~~t~~~ll~a~~~~~~~ 428 (785)
+.++|..-|..+.+ + .-.+.-.+|..+.+.|++++.++.|++|+.- .+ .-+....++++...+...+.
T Consensus 42 ~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m 121 (440)
T KOG1464|consen 42 EPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNM 121 (440)
T ss_pred CHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhh
Confidence 45555555555432 1 1223344677777778888877777777531 11 22345566777766666666
Q ss_pred HHHHHHHHHHHHh-----CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-------C-------ChhHHHHHHHHH
Q 003937 429 DHGKQIHASALRS-----GEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-------Q-------ETVSWTSMIVAL 489 (785)
Q Consensus 429 ~~a~~~~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------p-------~~~~~~~li~~~ 489 (785)
+.-.++++...+. +-..--.+-+.|...|...|.+..-.+++.++... . -...|..=|..|
T Consensus 122 ~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmY 201 (440)
T KOG1464|consen 122 DLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMY 201 (440)
T ss_pred HHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhh
Confidence 5555555443321 11111122245667777778888888888776411 0 123466667788
Q ss_pred HHcCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHhh-----ccCCHHHHHHHHHHhhhcCCC--CCCch---hHHHHHH
Q 003937 490 AQHGLGEEAIQLFERMLELG-IKPDHITYVGVLTACT-----HGGLVEQGQRYYNMMKNVHKI--KPTPS---HFASMVD 558 (785)
Q Consensus 490 ~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~--~p~~~---~~~~li~ 558 (785)
....+-.+-..++++.+.-. --|.+.. ..+++-|. +.|.+++|..-|-+..+.+.- .|... -|-.|.+
T Consensus 202 T~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLAN 280 (440)
T KOG1464|consen 202 TEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLAN 280 (440)
T ss_pred hhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHH
Confidence 88887777778888776522 2344433 34555553 568888876544444332321 23222 2555667
Q ss_pred HHhhcC----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003937 559 LLGRAG----LLQEAYNFIENMPLEPDVVAWGSLLSACRVH 595 (785)
Q Consensus 559 ~~~~~g----~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 595 (785)
++.++| +.+||.-+ .-.|.......|+.+|..+
T Consensus 281 MLmkS~iNPFDsQEAKPy----KNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 281 MLMKSGINPFDSQEAKPY----KNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHcCCCCCcccccCCC----CCCHHHHHHHHHHHHHhcc
Confidence 777776 22222110 2346677788899888654
No 321
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.43 E-value=91 Score=34.97 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=40.7
Q ss_pred CHHHHHHHHHhCCC--CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc-CChHHHHHHH
Q 003937 565 LLQEAYNFIENMPL--EPDVVAWGSLLSACR--VHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSC-GKWEDAANIR 639 (785)
Q Consensus 565 ~~~~A~~~~~~~~~--~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~ 639 (785)
+...|.++|..... .++..-+.++..... ...+.+.|...+.++-+.++ +.+...+...+... ++++.+.-.+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHH
Confidence 34566666665521 222222222222211 23366677777777766652 22233333332222 7777777777
Q ss_pred HHHHhCCCc
Q 003937 640 KSMKYVGVK 648 (785)
Q Consensus 640 ~~m~~~g~~ 648 (785)
..+.+.|..
T Consensus 421 ~~~a~~g~~ 429 (552)
T KOG1550|consen 421 LYLAELGYE 429 (552)
T ss_pred HHHHHhhhh
Confidence 777666553
No 322
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.33 E-value=6.1 Score=23.16 Aligned_cols=29 Identities=24% Similarity=0.083 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 585 WGSLLSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 585 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
|..+...+...|+.+.|...+++.+++.|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34444445555555555555555555544
No 323
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=74.23 E-value=1.6e+02 Score=33.47 Aligned_cols=57 Identities=12% Similarity=0.244 Sum_probs=32.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhC---CCC-chhH-----HHHHHHHHhcCChHHHHHHHHHHH
Q 003937 587 SLLSACRVHKNLDLGKIAAEKLLLIE---PDN-SGAY-----SALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 587 ~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~-~~~~-----~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
+++..-.-.|+.++..........+- |+. ...| ..+.+.|...|+.++|.....+..
T Consensus 539 ~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 539 NLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 34444233677776665555555432 221 2233 244555777899999988877664
No 324
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.09 E-value=27 Score=36.62 Aligned_cols=119 Identities=21% Similarity=0.206 Sum_probs=62.6
Q ss_pred HHcCChHHHHH-HHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHH
Q 003937 490 AQHGLGEEAIQ-LFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQE 568 (785)
Q Consensus 490 ~~~g~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (785)
...|+...|-+ ++..+....-.|+.+-..+.+ ..+.|.++.+.+.+....+ -+.....+..+++....+.|++++
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHH
Confidence 34566655543 444444443445555444333 4566777777776665543 333445556666666666777777
Q ss_pred HHHHHHhC---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003937 569 AYNFIENM---PL-EPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 569 A~~~~~~~---~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
|..+-+.| .+ .|.+++ .-.....+.|-++++.-..++++.+.|+
T Consensus 376 a~s~a~~~l~~eie~~ei~~--iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLT--VAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHHHHhccccCChhhee--eecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 76666655 11 122222 1222234455556666666666665543
No 325
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=74.04 E-value=5.3 Score=28.06 Aligned_cols=31 Identities=26% Similarity=0.243 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 003937 587 SLLSACRVHKNLDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 587 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 617 (785)
.+.-|+.+.|+++.|.+..+.+++++|+|..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 3455788999999999999999999997754
No 326
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=73.92 E-value=46 Score=26.93 Aligned_cols=60 Identities=22% Similarity=0.304 Sum_probs=43.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhH
Q 003937 353 LDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTL 415 (785)
Q Consensus 353 i~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 415 (785)
+..+...|++++|..+.+.+..||...|-++-. -+.|..+.+..-+.+|..+| .|...+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 345566779999999999999999999987754 36677777777777777665 4544444
No 327
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=73.48 E-value=6.7 Score=23.79 Aligned_cols=25 Identities=12% Similarity=-0.011 Sum_probs=14.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 589 LSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 589 l~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
..++...|+.++|...++++++..|
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3444555666666666666665555
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.35 E-value=8 Score=25.04 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLE 507 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 507 (785)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566666777777777777777766553
No 329
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.96 E-value=33 Score=37.35 Aligned_cols=133 Identities=18% Similarity=0.178 Sum_probs=86.9
Q ss_pred hHHHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhH
Q 003937 49 FLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKN 128 (785)
Q Consensus 49 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 128 (785)
...+.+...+.+.|-.++|..+--. ++. --....+.|+++.|.++..+. .+..-|..|-.+..+.|++..
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~s~D---~d~-----rFelal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~l 684 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALELSTD---PDQ-----RFELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPL 684 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhcCCC---hhh-----hhhhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchh
Confidence 3456677777777777777655221 111 122345677788887765443 355668888888888899888
Q ss_pred HHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcC
Q 003937 129 AIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGM 206 (785)
Q Consensus 129 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 206 (785)
|.+.|.+... |..|+-.+...|+.+....+-....+.|. .|.-.-+|...|+++++.+++.+-
T Consensus 685 A~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 685 ASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 8888877653 55677777777777766666666666662 233344566778888887777543
No 330
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=71.82 E-value=1.5e+02 Score=31.90 Aligned_cols=90 Identities=12% Similarity=0.030 Sum_probs=48.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 003937 553 FASMVDLLGRAGLLQEAYNFIENMP-L-EPDVVAWGSLLSAC--RVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS 628 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 628 (785)
-+.+++-+.+.|-..+|...+.+.. . +|+...+.-++.-- ...-++..+...++.+..--..|+..|......=..
T Consensus 463 ~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~ 542 (568)
T KOG2396|consen 463 KSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKEELP 542 (568)
T ss_pred hHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHhhcc
Confidence 3456666667777777777776662 2 23555555554431 122235556666666655333455555555544445
Q ss_pred cCChHHHHHHHHHH
Q 003937 629 CGKWEDAANIRKSM 642 (785)
Q Consensus 629 ~g~~~~a~~~~~~m 642 (785)
.|+.+.+-.++.+.
T Consensus 543 ~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 543 LGRPENCGQIYWRA 556 (568)
T ss_pred CCCcccccHHHHHH
Confidence 55555555544443
No 331
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=71.82 E-value=27 Score=28.33 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=34.8
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 570 YNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 570 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
+.-+-.+.+-|++.+..+.+.+|++-+++..|.++++-+...-.+....|--+
T Consensus 33 lN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~ 85 (108)
T PF02284_consen 33 LNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI 85 (108)
T ss_dssp HHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred HHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence 33333446779999999999999999999999999998876544333355444
No 332
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.78 E-value=14 Score=34.49 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=45.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 554 ASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 554 ~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
+.-+..+.+.+.+++|+...+.- ..+| |...-..|+..++..|++++|..-++-+-++.|++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34456677788888888766544 4456 455667777888888888888888888888888654
No 333
>PRK12798 chemotaxis protein; Reviewed
Probab=71.39 E-value=1.4e+02 Score=31.41 Aligned_cols=180 Identities=17% Similarity=0.162 Sum_probs=116.6
Q ss_pred cCCHHHHHHHHHhcccC---CChhHHHHHHHHH-HHcCChHHHHHHHHHHHHCCCCCCHH----HHHHHHHHhhccCCHH
Q 003937 460 AGNINAARRVFNLIHWR---QETVSWTSMIVAL-AQHGLGEEAIQLFERMLELGIKPDHI----TYVGVLTACTHGGLVE 531 (785)
Q Consensus 460 ~g~~~~A~~~~~~~~~~---p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~g~~~ 531 (785)
.|+.++|.+.+..+..+ +....+-.|+.+- ....++.+|+++|++..- .-|-.. ...--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 68999999999888533 3556677777664 445679999999999876 456443 3444445678889999
Q ss_pred HHHHHHHHhhhcCCCCCCchhHHH-HHHHHhhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003937 532 QGQRYYNMMKNVHKIKPTPSHFAS-MVDLLGRA---GLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEK 607 (785)
Q Consensus 532 ~a~~~~~~m~~~~~~~p~~~~~~~-li~~~~~~---g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 607 (785)
++..+-......+...|-...|.. ++..+.+. -..+.-.+++..|.-.--...|..+...-...|+.+.|....++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 887776655554555555433332 22333333 34445556666664222356888888888999999999999999
Q ss_pred HHhhCCCCchhHHHHHHHHHh-----cCChHHHHHHHHHH
Q 003937 608 LLLIEPDNSGAYSALCNLYSS-----CGKWEDAANIRKSM 642 (785)
Q Consensus 608 ~~~~~p~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m 642 (785)
+..+.. ....-...+..|.. ..++++|.+.+..+
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 999764 23333334444433 34566666665554
No 334
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=71.35 E-value=8.9 Score=23.53 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 617 GAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 617 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
.+|..++.+|...|++++|.+.+++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3678899999999999999999998764
No 335
>PRK10941 hypothetical protein; Provisional
Probab=71.29 E-value=19 Score=35.73 Aligned_cols=61 Identities=18% Similarity=0.107 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 585 WGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 585 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
.+.|-.++.+.++++.|..+.+.++.+.|+++.-+.--+-+|.+.|.+..|..=++.-.+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4667777899999999999999999999999988888999999999999999988877654
No 336
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.19 E-value=99 Score=29.60 Aligned_cols=24 Identities=13% Similarity=-0.040 Sum_probs=17.0
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
...+++.+|+.+|+++..-..+|+
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccch
Confidence 456778889999888876544443
No 337
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=70.99 E-value=28 Score=27.95 Aligned_cols=53 Identities=19% Similarity=0.180 Sum_probs=37.3
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 570 YNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 570 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
+.-+-.+.+-|++.+..+-+.+|++-+++..|.++++-+...-..+...|--+
T Consensus 30 mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~ 82 (103)
T cd00923 30 LNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI 82 (103)
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence 33333446778999999999999999999999999997764333233344433
No 338
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=70.75 E-value=11 Score=35.12 Aligned_cols=109 Identities=18% Similarity=0.156 Sum_probs=73.6
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLD 599 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 599 (785)
-|-..|.+.-|+--|.+.. .+.|+ +.+||-|.--+...|+++.|.+.|+.. .++|. ..+...-.-++.--|++.
T Consensus 74 lYDSlGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence 4667788888888787765 46677 567787777788889999999999887 56663 222222222245568899
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcC--ChHHHHH
Q 003937 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSCG--KWEDAAN 637 (785)
Q Consensus 600 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--~~~~a~~ 637 (785)
.|.+-+.+.-+-+|+||- ..++.|.... +..+|..
T Consensus 151 LAq~d~~~fYQ~D~~DPf---R~LWLYl~E~k~dP~~A~t 187 (297)
T COG4785 151 LAQDDLLAFYQDDPNDPF---RSLWLYLNEQKLDPKQAKT 187 (297)
T ss_pred hhHHHHHHHHhcCCCChH---HHHHHHHHHhhCCHHHHHH
Confidence 999988888888887763 2345554433 4455544
No 339
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=70.65 E-value=16 Score=36.48 Aligned_cols=87 Identities=16% Similarity=0.102 Sum_probs=62.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcC
Q 003937 486 IVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAG 564 (785)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 564 (785)
.+-|.++|.+++|+..|..-.. +.| |.+++..-..||.+...+..|..-...... . -...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia-----L----d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA-----L----DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH-----h----hHHHHHHHHHHH
Confidence 3469999999999999998887 678 899999999999999998888776665543 1 123566777666
Q ss_pred CHHHHHHHHHhC--------CCCCCHH
Q 003937 565 LLQEAYNFIENM--------PLEPDVV 583 (785)
Q Consensus 565 ~~~~A~~~~~~~--------~~~p~~~ 583 (785)
.-.+++..+.+. .++|+..
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence 544444444333 4667643
No 340
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.32 E-value=70 Score=34.96 Aligned_cols=99 Identities=18% Similarity=0.140 Sum_probs=52.4
Q ss_pred HhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHH
Q 003937 222 IHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIH 301 (785)
Q Consensus 222 ~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 301 (785)
.+.|+++.|.++..+ ..+..-|..|-.+..+.|++..|.+.|... +. |..|+-.+...|+-+....+-
T Consensus 648 l~lgrl~iA~~la~e--~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a-~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVE--ANSEVKWRQLGDAALSAGELPLASECFLRA-RD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhcCcHHHHHHHHHh--hcchHHHHHHHHHHhhcccchhHHHHHHhh-cc---------hhhhhhhhhhcCChhHHHHHH
Confidence 344555555555443 235566777777777777777777777665 22 445555555555555444444
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 003937 302 AYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQ 338 (785)
Q Consensus 302 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 338 (785)
....+.|.. |.-.-+|...|+++++.+++.+
T Consensus 716 ~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 716 SLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 444444421 2223345555555555444443
No 341
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.07 E-value=94 Score=28.87 Aligned_cols=112 Identities=10% Similarity=0.043 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHH--HHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHH-----HHHHhhcCCHHHH
Q 003937 497 EAIQLFERMLELGIKPDHITYVG--VLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASM-----VDLLGRAGLLQEA 569 (785)
Q Consensus 497 ~A~~~~~~m~~~g~~p~~~t~~~--ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----i~~~~~~g~~~~A 569 (785)
+.....+++....-+...-++.+ +.......|++++|..-++.... .|..+.+..+ .......|..|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 55555566655321111122222 33456778888888888876653 2333334433 4567788899999
Q ss_pred HHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 570 YNFIENMPLEPDVVAW--GSLLSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 570 ~~~~~~~~~~p~~~~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
+..++... .++-... ..-.+.+...|+-++|+..|+++++.++
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 99988764 2322221 2223347888999999999999988765
No 342
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.46 E-value=89 Score=28.36 Aligned_cols=121 Identities=17% Similarity=0.138 Sum_probs=59.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCch-hHHHH--HHHHhhcC
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPS-HFASM--VDLLGRAG 564 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~l--i~~~~~~g 564 (785)
+++.+..++|+.-|.++.+.|...=++ ...-........|+...|...|+++-++..+ |-+. -..-| .-++.-.|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~-P~~~rd~ARlraa~lLvD~g 146 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSI-PQIGRDLARLRAAYLLVDNG 146 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCC-cchhhHHHHHHHHHHHhccc
Confidence 356677788888888877766443222 2222333456667777777777777653222 2211 11111 11234455
Q ss_pred CHHHHHHHHHhCCC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 565 LLQEAYNFIENMPL--EPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 565 ~~~~A~~~~~~~~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
.+++.....+.+.. .|- ...-.+|.-+-.+.|++..|...|+++..
T Consensus 147 sy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 147 SYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555555554421 111 12223344444455555555555555543
No 343
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.19 E-value=82 Score=31.48 Aligned_cols=50 Identities=8% Similarity=0.151 Sum_probs=34.7
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHh
Q 003937 392 LNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRS 441 (785)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 441 (785)
++.+++.++..=++-|+-||.+|++.+|+.+.+.++...|.++.-.++..
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 45567777766667777777777777777777777777766666655544
No 344
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=68.16 E-value=7.1 Score=23.65 Aligned_cols=28 Identities=18% Similarity=0.249 Sum_probs=24.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 618 AYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 618 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998753
No 345
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.07 E-value=1.2e+02 Score=29.47 Aligned_cols=90 Identities=16% Similarity=0.193 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHH-------hCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCC------------
Q 003937 315 VGNALISCYAKVGGVEIAQKIVEQ-------SGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDR------------ 375 (785)
Q Consensus 315 ~~~~li~~y~~~g~~~~A~~~~~~-------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~------------ 375 (785)
..|++++.-..+.+.+-...+++. .+....-..|-+.|...|...|++..-.+++.++.+.
T Consensus 107 sIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kK 186 (440)
T KOG1464|consen 107 SINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKK 186 (440)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhc
Confidence 345555555444444444433332 2222222233445555566666666666666555320
Q ss_pred ---CHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003937 376 ---DVVAWTAMLVGYEQNGLNKDAVELFRSMV 404 (785)
Q Consensus 376 ---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 404 (785)
=...|..=|..|....+-..--.+|++.+
T Consensus 187 GtQLLEiYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 187 GTQLLEIYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred cchhhhhHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 12345555666666665555555565544
No 346
>PRK11619 lytic murein transglycosylase; Provisional
Probab=67.25 E-value=2.3e+02 Score=32.38 Aligned_cols=116 Identities=9% Similarity=0.070 Sum_probs=62.6
Q ss_pred cCChHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHH
Q 003937 492 HGLGEEAIQLFERMLEL-GIKPDHI--TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQE 568 (785)
Q Consensus 492 ~g~~~~A~~~~~~m~~~-g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (785)
..+.+.|..++...... ++.++.. ....+.......+..+++...++.... -..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~---~~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIM---RSQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccc---ccCCcHHHHHHHHHHHHccCHHH
Confidence 34567788888876443 2333332 333333333333225566666665432 11233444444555557888888
Q ss_pred HHHHHHhCCCC-CCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHh
Q 003937 569 AYNFIENMPLE-PDVVAWGS-LLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 569 A~~~~~~~~~~-p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
+...|..|+-. .+...|.- +..+....|+.+.|...++++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 88888887411 12222322 33444557888888888888743
No 347
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=67.18 E-value=1.1e+02 Score=30.38 Aligned_cols=56 Identities=9% Similarity=0.153 Sum_probs=36.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---CHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003937 349 FTTLLDGYIKIGDIGPARRIFDSLRDR---DVVAWTAMLVGYEQNGLNKDAVELFRSMV 404 (785)
Q Consensus 349 ~~~li~~~~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 404 (785)
.+.....|.++|.+.+|..+-++...- +...|-.++..++..|+--.|.+-+..+.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344455666777777777777766542 44567777777777777666766666664
No 348
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=66.66 E-value=41 Score=36.47 Aligned_cols=149 Identities=13% Similarity=0.056 Sum_probs=93.3
Q ss_pred CChhHHHHHHHHHHHcC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHH
Q 003937 477 QETVSWTSMIVALAQHG--LGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFA 554 (785)
Q Consensus 477 p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 554 (785)
|+..+..+++.-....- ..+-|-.+|..|... +-|--++.+...--....|+...|...+.....+...+.++ ...
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~-~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v-~~v 646 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINKP-NAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDV-PLV 646 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCC-CCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcc-cHH
Confidence 45555554444333222 123344455555331 23333333322222345688888888887665433233333 344
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 555 SMVDLLGRAGLLQEAYNFIENM-PL-EPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
.|...+.+.|...+|-.++.+. .+ ...+.++.++..++....+++.|++.++++++++|+++..-..|..+-+
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 5677778888888888877665 22 2345677888888888899999999999999999999988877776654
No 349
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=65.29 E-value=45 Score=23.45 Aligned_cols=26 Identities=15% Similarity=0.034 Sum_probs=21.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 619 YSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 619 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
...++-++.+.|++++|.++.+.+.+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45677788999999999999999875
No 350
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=65.11 E-value=29 Score=31.62 Aligned_cols=45 Identities=22% Similarity=0.201 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC----hHHHHHHHHHH
Q 003937 598 LDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK----WEDAANIRKSM 642 (785)
Q Consensus 598 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~~a~~~~~~m 642 (785)
+++|+.-+++++.++|+...++..++++|...|. -.+|..+|++.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 4567777788888999999999999999988764 33444444444
No 351
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.39 E-value=24 Score=34.63 Aligned_cols=59 Identities=12% Similarity=0.058 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 585 WGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 585 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
++-....|...|.+.+|.++.++++.++|-+...+-.|.+.|+..|+--+|.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34445568899999999999999999999999999999999999999888888888885
No 352
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=63.84 E-value=46 Score=31.08 Aligned_cols=73 Identities=16% Similarity=0.161 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHhcCCHHHHH
Q 003937 394 KDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRS---GEASSLSVSNALITMYSKAGNINAAR 467 (785)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---g~~~~~~~~~~li~~y~~~g~~~~A~ 467 (785)
++|.+.|-++...+.- +....-..+..+....+.+++.+++-.+... +-.+|+.++.+|+..|.+.|+.+.|.
T Consensus 123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 4566666666655433 3333444444444456666666666665553 22556666777777777777766664
No 353
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=62.76 E-value=36 Score=31.03 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 003937 598 LDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKK 649 (785)
Q Consensus 598 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 649 (785)
+++|...|+++.+.+|+| ..|..-+.+. ++|-++..+..+++...
T Consensus 96 F~kA~~~FqkAv~~~P~n-e~Y~ksLe~~------~kap~lh~e~~~~~~~~ 140 (186)
T PF06552_consen 96 FEKATEYFQKAVDEDPNN-ELYRKSLEMA------AKAPELHMEIHKQGLGQ 140 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHH------HTHHHHHHHHHHSSS--
T ss_pred HHHHHHHHHHHHhcCCCc-HHHHHHHHHH------HhhHHHHHHHHHHHhhh
Confidence 567888888888899954 5666555554 45778888887776643
No 354
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.33 E-value=25 Score=27.61 Aligned_cols=35 Identities=11% Similarity=0.156 Sum_probs=19.3
Q ss_pred cCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChh
Q 003937 92 QGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFK 127 (785)
Q Consensus 92 ~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~ 127 (785)
.|+.+.|+++++.++ +.+-.|...+.++-..|...
T Consensus 49 ~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 49 HGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred cCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 355555555555555 55555555555555555443
No 355
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=60.69 E-value=1.3e+02 Score=27.98 Aligned_cols=54 Identities=19% Similarity=0.039 Sum_probs=29.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 487 VALAQHGLGEEAIQLFERMLELGIKPDHI-----TYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-----t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
.-+..+|++++|..-|.+.++. ++|... .|..-..+..+.+.++.|+.-..+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai 161 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI 161 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH
Confidence 3467788888888888887773 222221 23333334455555555555444443
No 356
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=60.27 E-value=3.1e+02 Score=31.32 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=15.3
Q ss_pred HhhcCCHHHHHHHHHhCCCCC
Q 003937 560 LGRAGLLQEAYNFIENMPLEP 580 (785)
Q Consensus 560 ~~~~g~~~~A~~~~~~~~~~p 580 (785)
+...|++++|++.++++++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 467889999999999998777
No 357
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.22 E-value=1.6e+02 Score=28.20 Aligned_cols=56 Identities=18% Similarity=0.329 Sum_probs=35.6
Q ss_pred HHhhcCCHHHHHHHHHhC---CCCCCHHHHH---HHHHH--HHh-cCCHHHHHHHHHHHHhhCCC
Q 003937 559 LLGRAGLLQEAYNFIENM---PLEPDVVAWG---SLLSA--CRV-HKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~---~~~p~~~~~~---~ll~~--~~~-~g~~~~a~~~~~~~~~~~p~ 614 (785)
.-+..|++.+|.++|++. .+..+..-|. -++.+ |.- ..+.-.+...+++..+++|.
T Consensus 163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence 335667888899998887 2333333332 22222 332 36777788889999999996
No 358
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=59.29 E-value=25 Score=28.02 Aligned_cols=44 Identities=25% Similarity=0.259 Sum_probs=33.0
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 602 KIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 602 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...+++.++.+|+|...-..++..|...|++++|.+.+-.+.+.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 44566667788888888888888888889999888887777654
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=59.26 E-value=1.6e+02 Score=27.88 Aligned_cols=124 Identities=17% Similarity=0.145 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhc-CCCCCCchhHHHHHH
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNV-HKIKPTPSHFASMVD 558 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~ 558 (785)
|.+..++.+.+.+...+|+...++-.+. +|.. .+-..++..++-.|+|++|..-++...+. ....+....|..+|+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3455677788888889999888887774 5544 46667777888899999988777655430 112223444544443
Q ss_pred HHhhcCCHHHHH-HHHHhC--C---CCCCHHHHH-HHHHHHH--hcCCHHHHHHHHHHHHhhCCC
Q 003937 559 LLGRAGLLQEAY-NFIENM--P---LEPDVVAWG-SLLSACR--VHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 559 ~~~~~g~~~~A~-~~~~~~--~---~~p~~~~~~-~ll~~~~--~~g~~~~a~~~~~~~~~~~p~ 614 (785)
. +.+. ++|..- | ..| ...|- .|+.+.. ..|.-+....+-++.++..|.
T Consensus 81 ~-------ea~R~evfag~~~Pgflg~p-~p~wva~L~aala~h~dg~gea~~alreqal~aa~~ 137 (273)
T COG4455 81 C-------EAARNEVFAGGAVPGFLGGP-SPEWVAALLAALALHSDGAGEARTALREQALKAAPV 137 (273)
T ss_pred H-------HHHHHHHhccCCCCCCcCCC-CHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCC
Confidence 2 2222 344433 1 113 33454 4444433 334455566667777776664
No 360
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=59.26 E-value=49 Score=34.85 Aligned_cols=129 Identities=18% Similarity=0.208 Sum_probs=83.8
Q ss_pred HhcCCHHHHH-HHHHhcc---cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHH
Q 003937 458 SKAGNINAAR-RVFNLIH---WRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 458 ~~~g~~~~A~-~~~~~~~---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 533 (785)
...|++-.|. ++|+.+. ..|+.+..-+.| +...|+++.+.+.+...... +-....+..+++......|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 3467776664 4555554 335555555444 45679999999988776553 455667889999999999999999
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PL-EPDVVAWGSLLSA 591 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~ 591 (785)
...-..|..+ .++ +.+....-...--..|.++++.-.+++. .+ .|...-|-.+++.
T Consensus 377 ~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~ 434 (831)
T PRK15180 377 LSTAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSS 434 (831)
T ss_pred HHHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeecc
Confidence 9998888752 332 2222222222233457889998888887 33 3445556666665
No 361
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=59.19 E-value=54 Score=31.29 Aligned_cols=62 Identities=13% Similarity=-0.034 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhcCCHHH-------HHHHHHHHHhhC--CC----CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 584 AWGSLLSACRVHKNLDL-------GKIAAEKLLLIE--PD----NSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~-------a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
.+.-+.+.|+..|+.+. |...|+++.+.+ |. .......++.++.+.|+.++|.+++.++...
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 45555666777787554 444555555433 22 2346678899999999999999999998754
No 362
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=59.15 E-value=29 Score=27.28 Aligned_cols=65 Identities=14% Similarity=0.156 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 003937 164 GKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLA 230 (785)
Q Consensus 164 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A 230 (785)
+.++++.+.+.|+- +......+-.+-...|+.+.|+++++.++ ++...+..++.++-..|.-+-|
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 44556666666532 11222222222224466666666666666 5555555555555555554443
No 363
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=57.81 E-value=18 Score=24.27 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 620 SALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 620 ~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
..|+.+|...|+.+.|.++++.....|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357889999999999999999887543
No 364
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=57.80 E-value=97 Score=26.82 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHh-hCCCC-chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 597 NLDLGKIAAEKLLL-IEPDN-SGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 597 ~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+..+++.+++.+.+ -.|.. .....-|.-++.+.|+++++.++.+...+
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 34455555555554 22322 12333344455566666666666555543
No 365
>PF15161 Neuropep_like: Neuropeptide-like
Probab=57.68 E-value=5.4 Score=27.50 Aligned_cols=18 Identities=33% Similarity=0.695 Sum_probs=13.3
Q ss_pred cccccccchhHHHHHHhhh
Q 003937 740 KNLRVCNDCHSAIKFICKL 758 (785)
Q Consensus 740 ~nl~~c~dch~~~~~~s~~ 758 (785)
-.-|-|.|||.|- |+.+.
T Consensus 11 aesRPCVDCHAFe-fmqRA 28 (65)
T PF15161_consen 11 AESRPCVDCHAFE-FMQRA 28 (65)
T ss_pred CCCCCchhhHHHH-HHHHH
Confidence 4578899999876 66543
No 366
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=57.29 E-value=22 Score=37.63 Aligned_cols=83 Identities=14% Similarity=0.108 Sum_probs=53.1
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHH
Q 003937 561 GRAGLLQEAYNFIENM-PLEPDVVAWGSLL-SACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANI 638 (785)
Q Consensus 561 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 638 (785)
.+.+.++.|..++.+. .++||...|-+.- .++.+.+++..|..-+.++++++|.....|+.=+.++.+.+++.+|...
T Consensus 15 l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 15 LKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred cccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHH
Confidence 3445555555555554 4566655443333 4566677777777777777777777666777777777777777777777
Q ss_pred HHHHH
Q 003937 639 RKSMK 643 (785)
Q Consensus 639 ~~~m~ 643 (785)
++...
T Consensus 95 l~~~~ 99 (476)
T KOG0376|consen 95 LEKVK 99 (476)
T ss_pred HHHhh
Confidence 66654
No 367
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.97 E-value=2.8e+02 Score=29.79 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 003937 378 VAWTAMLVGYEQ---NGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSS 424 (785)
Q Consensus 378 ~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 424 (785)
..+..++.++.+ .++.+.|+..+..|.+.|..|....-..+..++..
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 344555666655 47899999999999999988886655555544433
No 368
>PF13934 ELYS: Nuclear pore complex assembly
Probab=56.39 E-value=1.3e+02 Score=29.04 Aligned_cols=15 Identities=33% Similarity=0.660 Sum_probs=7.2
Q ss_pred hcCCHHHHHHHHHhC
Q 003937 562 RAGLLQEAYNFIENM 576 (785)
Q Consensus 562 ~~g~~~~A~~~~~~~ 576 (785)
.+|.+.||..+.+..
T Consensus 152 a~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 152 ANGLVTEAFSFQRSY 166 (226)
T ss_pred HcCCHHHHHHHHHhC
Confidence 334555555544444
No 369
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=56.12 E-value=3.5e+02 Score=30.76 Aligned_cols=152 Identities=16% Similarity=0.270 Sum_probs=81.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCCChhH----------HHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCHHHH-
Q 003937 451 NALITMYSKAGNINAARRVFNLIHWRQETVS----------WTSMIVALAQHGLGEEAIQLFERMLEL--GIKPDHITY- 517 (785)
Q Consensus 451 ~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~----------~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~- 517 (785)
..++-.|....+++.-.++.+.++.-||..- |.--++---+-|+-++|+...-.|.+. .+.||..+.
T Consensus 205 ~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~ 284 (1226)
T KOG4279|consen 205 SNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLC 284 (1226)
T ss_pred HHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeee
Confidence 3444455566666666666666654443321 222222223445667777766666543 255665432
Q ss_pred ----HHH--HHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHH------------------------HHHhhcCCHH
Q 003937 518 ----VGV--LTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMV------------------------DLLGRAGLLQ 567 (785)
Q Consensus 518 ----~~l--l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li------------------------~~~~~~g~~~ 567 (785)
.-+ -+.|...+..+.|.++|++.- .++|+...--.+. .+++|.|.++
T Consensus 285 GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~le 361 (1226)
T KOG4279|consen 285 GRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGALE 361 (1226)
T ss_pred chhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccchHH
Confidence 211 123445566677777777654 3455533322222 2334444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 003937 568 EAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 568 ~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 615 (785)
.-.++++ + .+.+.+-.-.+++.+|.++.++|.++.|..
T Consensus 362 klq~YWd-------V---~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 362 KLQEYWD-------V---ATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHHh-------H---HHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 4333332 1 234455566789999999999999998853
No 370
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=54.96 E-value=24 Score=21.02 Aligned_cols=29 Identities=10% Similarity=0.138 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 003937 596 KNLDLGKIAAEKLLLIEPDNSGAYSALCN 624 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 624 (785)
|+.+.+..++++++...|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 46778888888888888877777666554
No 371
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=54.60 E-value=1.5e+02 Score=32.36 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=36.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccCC-Chh---HHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 003937 451 NALITMYSKAGNINAARRVFNLIHWRQ-ETV---SWTSMIVALAQHGLGEEAIQLFERMLEL 508 (785)
Q Consensus 451 ~~li~~y~~~g~~~~A~~~~~~~~~~p-~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 508 (785)
..|+.-|.+++++++|..++..|.... ... +.+.+.+.+.+..-.++....++.+...
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 357778999999999999999887441 122 2344445555554445555555555543
No 372
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=54.49 E-value=3.1e+02 Score=29.64 Aligned_cols=102 Identities=11% Similarity=0.130 Sum_probs=77.9
Q ss_pred CCCCHHHHH-HHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHH---hhcCCHHHHHHHHHhC--CCCCCHH
Q 003937 510 IKPDHITYV-GVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLL---GRAGLLQEAYNFIENM--PLEPDVV 583 (785)
Q Consensus 510 ~~p~~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~---~~~g~~~~A~~~~~~~--~~~p~~~ 583 (785)
..|+..|+. .++.-+-..|-..+|...+..+.. --+|+...|..+|..= ..+| +.-+.++++.| .+-.|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 578887764 467777888999999999999875 4466788888888643 3444 77788888888 2336788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCC
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLL-IEPD 614 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~ 614 (785)
.|...+.--..+|..+.+-.++.++.+ ++|.
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 898888887899999988888888876 5664
No 373
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=53.18 E-value=2.5e+02 Score=28.08 Aligned_cols=60 Identities=10% Similarity=0.195 Sum_probs=38.5
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc----CCChhHHHHHHHHHHHcCChHHHHHHH
Q 003937 443 EASSLSVSNALITMYSKAGNINAARRVFNLIHW----RQETVSWTSMIVALAQHGLGEEAIQLF 502 (785)
Q Consensus 443 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~p~~~~~~~li~~~~~~g~~~~A~~~~ 502 (785)
-.++..+...+++.+++.+++.+-.++++.... ..|...|...|......|+..-...+.
T Consensus 198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 345555556677777777777777777765431 126677888888877777765444433
No 374
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=53.17 E-value=96 Score=25.78 Aligned_cols=27 Identities=15% Similarity=0.464 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLE 507 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 507 (785)
-|..++.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 478888888888888899988888776
No 375
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.07 E-value=3.8e+02 Score=30.15 Aligned_cols=209 Identities=12% Similarity=0.099 Sum_probs=89.5
Q ss_pred chHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh---cCCHHHHHHHHHhcccCCChhHHHHHHHHHH----HcCChHHHH
Q 003937 427 SLDHGKQIHASALRSGEASSLSVSNALITMYSK---AGNINAARRVFNLIHWRQETVSWTSMIVALA----QHGLGEEAI 499 (785)
Q Consensus 427 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~---~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~ 499 (785)
+.+.|..++....+.|.+..... |...|.. ..+...|.++|.....+..+.+.-.+..+|. ...+...|.
T Consensus 308 d~~~A~~~~~~aA~~g~~~a~~~---lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGNPDAQYL---LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred cHHHHHHHHHHHHhcCCchHHHH---HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHH
Confidence 34455666655555553332211 2222222 2345666666666654434444333333322 223466677
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHH-----hh--cCCHHHHHHH
Q 003937 500 QLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLL-----GR--AGLLQEAYNF 572 (785)
Q Consensus 500 ~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~-----~~--~g~~~~A~~~ 572 (785)
.++.+.-+.| .|-..--...+..+.. +.++.+.-.+..+.. .|.+--...-..+.+.. .+ ..+.+.+..+
T Consensus 385 ~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~-~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (552)
T KOG1550|consen 385 AYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE-LGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSL 461 (552)
T ss_pred HHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH-hhhhHHhhHHHHHHHhccccccccccccchhHHHHH
Confidence 7777776666 3332222222333333 555555444444433 22221111111111111 00 1244445555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc-C--ChHHHHHHHHHHHh
Q 003937 573 IENMPLEPDVVAWGSLLSACRVH----KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSC-G--KWEDAANIRKSMKY 644 (785)
Q Consensus 573 ~~~~~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~m~~ 644 (785)
+.+...+-+......|-..|... .+.+.|...+.++-+.. +.....|..++-+. | .+..|.++++...+
T Consensus 462 ~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 462 YSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 55553333344333343333221 24555666555554443 34444455544332 1 14566666666544
No 376
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=52.09 E-value=56 Score=31.28 Aligned_cols=68 Identities=12% Similarity=0.110 Sum_probs=51.0
Q ss_pred CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 577 PLEPDVVAW-GSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 577 ~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
-+.|++.+| ..=+-.+.+..+++....-..+++++.|+.......|.........+++|+..+++..+
T Consensus 38 ~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 38 CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 456776544 34444456677888888888888888887777888888888888888888888888743
No 377
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=52.02 E-value=11 Score=37.88 Aligned_cols=114 Identities=11% Similarity=0.096 Sum_probs=50.4
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHH
Q 003937 526 HGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVV-AWGSLLSACRVHKNLDLGKI 603 (785)
Q Consensus 526 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~ll~~~~~~g~~~~a~~ 603 (785)
..|.++.|++.|...++ --.|....|..=...+.+.++...|.+=+... .+.||.. -|-.=-.+-+..|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34556666666655543 11222333333334444455555554443333 3344422 22222333344555555555
Q ss_pred HHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 604 AAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 604 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
.++.+.+++- +..+-..|-...-+.+..++-...+++.
T Consensus 204 dl~~a~kld~-dE~~~a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 204 DLALACKLDY-DEANSATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHhccc-cHHHHHHHHHhccchhhhhhchhHHHHH
Confidence 5555555544 3333334444444444444444444443
No 378
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=51.96 E-value=79 Score=27.86 Aligned_cols=51 Identities=10% Similarity=0.110 Sum_probs=36.2
Q ss_pred CCccHHHHHHHHHHhCCC-hhHHHHHHHHhHHCCCCCChhhHHHHHHHHhcc
Q 003937 108 RDSVSWTTIIVTYNEIGR-FKNAIRMFVEMVQDQVLPTQFTVTSVLASCTAL 158 (785)
Q Consensus 108 ~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 158 (785)
.+..+|++++.+.++... ---+..+|..|.+.+.+++..-|..++++|.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 355678888888765554 344567777777777788888888888887654
No 379
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=50.94 E-value=1.7e+02 Score=30.62 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=49.5
Q ss_pred CHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhhCCC-CchhHHHHHHHHH-hcCChHHHHHHHHHHHh
Q 003937 581 DVVAWGSL---LSACRVHKNLDLGKIAAEKLLLIEPD-NSGAYSALCNLYS-SCGKWEDAANIRKSMKY 644 (785)
Q Consensus 581 ~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 644 (785)
|...|.+| +..+.+.|-+.-|.+..+-++.++|. |+-.-...++.|+ +++.++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 44455555 44578899999999999999999998 8877777888874 66788777777777654
No 380
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=50.51 E-value=29 Score=23.29 Aligned_cols=24 Identities=21% Similarity=0.523 Sum_probs=14.2
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHC
Q 003937 116 IIVTYNEIGRFKNAIRMFVEMVQD 139 (785)
Q Consensus 116 li~~~~~~g~~~~a~~~~~~m~~~ 139 (785)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445566666666666666665543
No 381
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=50.50 E-value=34 Score=32.08 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=17.7
Q ss_pred HHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 606 EKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 606 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
++.....| ++..|..++.++...|+.++|.++++++.
T Consensus 135 ~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 135 ERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33333444 44445555555555555555555444443
No 382
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=49.58 E-value=2.1e+02 Score=30.19 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=32.0
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhh--ccCCHHHHHHHHHHhhh
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPDHI--TYVGVLTACT--HGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~ 542 (785)
+...+++..|.++|+++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33567777888888877775 555444 2333333332 35566777777776654
No 383
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.42 E-value=4.4e+02 Score=31.16 Aligned_cols=25 Identities=20% Similarity=0.506 Sum_probs=12.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhH
Q 003937 113 WTTIIVTYNEIGRFKNAIRMFVEMV 137 (785)
Q Consensus 113 ~~~li~~~~~~g~~~~a~~~~~~m~ 137 (785)
|..|+-.|...|.+++|++++.+..
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~ 531 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLV 531 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHh
Confidence 4444555555555555555554443
No 384
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=48.27 E-value=3.5e+02 Score=28.37 Aligned_cols=90 Identities=18% Similarity=0.232 Sum_probs=50.9
Q ss_pred HHHhhccCCHHHHHHHHHHhhhcCCCCC--CchhHHHHHHHHh-hcCCHHHHHHHHHhCCC--CCC------HHHHHHHH
Q 003937 521 LTACTHGGLVEQGQRYYNMMKNVHKIKP--TPSHFASMVDLLG-RAGLLQEAYNFIENMPL--EPD------VVAWGSLL 589 (785)
Q Consensus 521 l~a~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~--~p~------~~~~~~ll 589 (785)
+..+.+.|.+..|.++.+-+.. +.| |+...-.+||.|+ ++++++--.++.+.... ..+ ...|+.-+
T Consensus 110 i~~L~~RG~~rTAlE~~KlLls---Ldp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aL 186 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLS---LDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIAL 186 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHh---cCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHH
Confidence 3456677777777777766653 333 3444445566653 56666666666665421 111 12333333
Q ss_pred HHHHhcCC--------------HHHHHHHHHHHHhhCC
Q 003937 590 SACRVHKN--------------LDLGKIAAEKLLLIEP 613 (785)
Q Consensus 590 ~~~~~~g~--------------~~~a~~~~~~~~~~~p 613 (785)
.-+...+. .+.|...+.+++..-|
T Consensus 187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 33333222 3788888888888877
No 385
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=48.18 E-value=33 Score=26.92 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=26.5
Q ss_pred ChhhHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCCh
Q 003937 78 TLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRF 126 (785)
Q Consensus 78 ~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~ 126 (785)
++.+....-...+...+.+.|.++++.++.+...+|.++..++-..|..
T Consensus 29 ~Vlt~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~ 77 (84)
T cd08326 29 GVFTPDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQT 77 (84)
T ss_pred CCCCHHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCch
Confidence 3333333333334444456666666666666666666666666555543
No 386
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=47.52 E-value=5.2e+02 Score=30.22 Aligned_cols=187 Identities=17% Similarity=0.120 Sum_probs=100.8
Q ss_pred hcCCHHHHHHHHHhccc---CCCh-------hHHHHHHHH-HHHcCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHH
Q 003937 459 KAGNINAARRVFNLIHW---RQET-------VSWTSMIVA-LAQHGLGEEAIQLFERMLEL----GIKPDHITYVGVLTA 523 (785)
Q Consensus 459 ~~g~~~~A~~~~~~~~~---~p~~-------~~~~~li~~-~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a 523 (785)
-..++++|..++.+... .|+. ..|+.+-.- ....|++++|+++.+..... -..+..+.+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 35678888877776531 1121 246655433 34567888888888777653 112233455666667
Q ss_pred hhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHH-----HHHhhcCCHHHHH--HHHHhC-----CCCCC----HHHHHH
Q 003937 524 CTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMV-----DLLGRAGLLQEAY--NFIENM-----PLEPD----VVAWGS 587 (785)
Q Consensus 524 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-----~~~~~~g~~~~A~--~~~~~~-----~~~p~----~~~~~~ 587 (785)
..-.|++++|..+.....+ ..-.-++.++...+ ..+-..|+...|. ..|... +-+|- .-+...
T Consensus 507 ~~~~G~~~~Al~~~~~a~~-~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 507 AHIRGELTQALALMQQAEQ-MARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHhchHHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7778888888887766554 22223444443322 2345556333222 222222 11221 223444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh----hCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 003937 588 LLSACRVHKNLDLGKIAAEKLLL----IEPDNS---GAYSALCNLYSSCGKWEDAANIRKSMKYVGVKK 649 (785)
Q Consensus 588 ll~~~~~~g~~~~a~~~~~~~~~----~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 649 (785)
++.++.+ .+.+..-+...++ ..|... ..+..|+..+...|+.++|...+..+..-....
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~ 651 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG 651 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence 4444333 4444444444433 233221 123478888899999999999999887654443
No 387
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=47.02 E-value=3.3e+02 Score=27.78 Aligned_cols=150 Identities=18% Similarity=0.139 Sum_probs=81.6
Q ss_pred CHHHHHHHHHhc-ccCCChhHHHHHHHHHHHcC-----ChHHHH--------HHHHHH-HHCCCCCC--H----HHHHH-
Q 003937 462 NINAARRVFNLI-HWRQETVSWTSMIVALAQHG-----LGEEAI--------QLFERM-LELGIKPD--H----ITYVG- 519 (785)
Q Consensus 462 ~~~~A~~~~~~~-~~~p~~~~~~~li~~~~~~g-----~~~~A~--------~~~~~m-~~~g~~p~--~----~t~~~- 519 (785)
.++.+.++...+ ...++...|..++..+..-. ..+... +++..+ .+.|..+. . .....
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~ 134 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRAL 134 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHH
Confidence 455666677766 55557777777665433211 111111 122222 22355554 1 22222
Q ss_pred HHH-HhhccCCHHHHHHHHHHhhhcCCC---CCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003937 520 VLT-ACTHGGLVEQGQRYYNMMKNVHKI---KPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVH 595 (785)
Q Consensus 520 ll~-a~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 595 (785)
++. +|...+-.++|.+.|+.......- ..++.....+.....+.|..++-..+++.....++...-..++.+.+..
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~ 214 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACS 214 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhcc
Confidence 233 342333467788888887762111 3455556667777788888766556665555456777888899998888
Q ss_pred CCHHHHHHHHHHHHhh
Q 003937 596 KNLDLGKIAAEKLLLI 611 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~ 611 (785)
.+.+.-.++++.++.-
T Consensus 215 ~d~~~~~~~l~~~l~~ 230 (324)
T PF11838_consen 215 PDPELLKRLLDLLLSN 230 (324)
T ss_dssp S-HHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHcCC
Confidence 8888888888888874
No 388
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=46.35 E-value=57 Score=20.74 Aligned_cols=30 Identities=10% Similarity=-0.150 Sum_probs=18.0
Q ss_pred HHHHHHHHHhcCCHHHHHHH--HHHHHhhCCC
Q 003937 585 WGSLLSACRVHKNLDLGKIA--AEKLLLIEPD 614 (785)
Q Consensus 585 ~~~ll~~~~~~g~~~~a~~~--~~~~~~~~p~ 614 (785)
|-.+...+...|+.++|..+ ++-+..++|.
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 44555556777777777777 3366656553
No 389
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=46.09 E-value=93 Score=27.34 Aligned_cols=66 Identities=15% Similarity=0.123 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH
Q 003937 566 LQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 566 ~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 634 (785)
-+.|.++.+-|+ .....-.........|++..|.++.+.++..+|+|...-...+++|...|.-.+
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 457778888885 223333445556789999999999999999999999888888888776665443
No 390
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=45.47 E-value=27 Score=29.98 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=25.5
Q ss_pred hCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHH
Q 003937 122 EIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASC 155 (785)
Q Consensus 122 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 155 (785)
..|.-.+|..+|.+|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 446677899999999999999985 66777654
No 391
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=44.98 E-value=4.1e+02 Score=28.25 Aligned_cols=334 Identities=15% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhC
Q 003937 114 TTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKV 193 (785)
Q Consensus 114 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~ 193 (785)
|-++.-|...|+..+|.+..+++ ..+.+.-..+=+++...+.-..+..+.-.+.+.+...+...-+.+..++.+.
T Consensus 218 n~~l~eyv~~getrea~rciR~L-----~vsffhhe~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~ 292 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIREL-----GVSFFHHEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRK 292 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHh-----CCCchhhHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhh
Q ss_pred CC--------hHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCc--------ccHHHHHHHHhhCCC
Q 003937 194 GD--------EMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDV--------VTWNSMIAGYSQNGY 257 (785)
Q Consensus 194 g~--------~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~--------~~~~~li~~~~~~g~ 257 (785)
+. +..|...|+.+..+.+ +|.+.++-.+.+....+.. .....+|.-|...|+
T Consensus 293 ~~slddl~ldiP~a~~~~esiv~Ka~------------s~gwl~e~s~k~~s~~~g~~e~~r~Fkk~~~~IIqEYFlsgD 360 (645)
T KOG0403|consen 293 GGSLDDLVLDIPSARYDFESIVPKAP------------SGGWLDENSFKETSVLPGDSENLRAFKKDLTPIIQEYFLSGD 360 (645)
T ss_pred ccccccccccCcchhhhhhhhcccCC------------CCCccchhhhcccccCCCcchHHHHHHHhhHHHHHHHHhcCC
Q ss_pred chHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 003937 258 DFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVE 337 (785)
Q Consensus 258 ~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~ 337 (785)
..+..+.++.+ ......|-..-+..-+..=.+...-+.+-.++..+ +...=..+...+-|.
T Consensus 361 t~Evi~~L~DL-n~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L------------------~~e~fsteDv~~~F~ 421 (645)
T KOG0403|consen 361 TPEVIRSLRDL-NLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDL------------------HGEVFSTEDVEKGFD 421 (645)
T ss_pred hHHHHHHHHHc-CCccccchHHHHHHHHHhccchhHHHHHHHHHHHh------------------hcccCCHHHHHHHHH
Q ss_pred HhCCCCC----chHhHHHHHHHHHhcCCHHHHHHHHHhcCCC-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 003937 338 QSGISYL----NVIAFTTLLDGYIKIGDIGPARRIFDSLRDR-DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNN 412 (785)
Q Consensus 338 ~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 412 (785)
.+.+..+ |...-...+..|. |+.+.+.+..| +...+..-+..-.+....-+.-+.+-.|...|
T Consensus 422 mLLesaedtALD~p~a~~elalFl-------ARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aG----- 489 (645)
T KOG0403|consen 422 MLLESAEDTALDIPRASQELALFL-------ARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAG----- 489 (645)
T ss_pred HHHhcchhhhccccccHHHHHHHH-------HHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcc-----
Q ss_pred hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHH
Q 003937 413 YTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALA 490 (785)
Q Consensus 413 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~ 490 (785)
..+++....-|.-......-+.+ ..|+.-|.-.|++.+|.+.++++.-+ -..+.+.+++.+.-
T Consensus 490 ---eRllr~WGgGG~g~sVed~kdkI------------~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mE 554 (645)
T KOG0403|consen 490 ---ERLLRVWGGGGGGWSVEDAKDKI------------DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVME 554 (645)
T ss_pred ---cchhheecCCCCcchHHHHHHHH------------HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Q ss_pred HcCChHHHHHHHHHHHHCCC
Q 003937 491 QHGLGEEAIQLFERMLELGI 510 (785)
Q Consensus 491 ~~g~~~~A~~~~~~m~~~g~ 510 (785)
+.|+...-+.++++....|+
T Consensus 555 kk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 555 KKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred hcCcHHHHHHHHHHHHhcCc
No 392
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=44.92 E-value=5.6e+02 Score=29.83 Aligned_cols=321 Identities=13% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHH-HHHHHhcCCHHHHHHHHHhcCCC---------------------
Q 003937 318 ALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTL-LDGYIKIGDIGPARRIFDSLRDR--------------------- 375 (785)
Q Consensus 318 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~f~~~~~~--------------------- 375 (785)
+++..+.+||+.+.|.+++++.+...+-...|... ..+|.++-+...-.++-.++...
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~~~~~l~~~f~~y~~A~~~~~~~~le~qlrl~~~~~l~~~~~DpyK~AvY~iig~cd 409 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKDFFEKLAELFPTYFNAYAKNLSSKLEKQLRLRLRSELGRNSTDPYKLAVYKIIGGCD 409 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcCCCccccHHHHHHHHHHhccccCChHHHHHHHHHhcCc
Q ss_pred ------------CHhHHHHHHHHHHHcC----------ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHH
Q 003937 376 ------------DVVAWTAMLVGYEQNG----------LNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQ 433 (785)
Q Consensus 376 ------------~~~~~~~li~~~~~~g----------~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 433 (785)
+-..|--|+-.....+ ..+.-..++..--..-..++.........++.-.|.++.|..
T Consensus 410 ~~~~~~ev~~tiED~LW~kL~~ir~~~~~sds~~~~~~~~~~~~~il~~YG~sYFt~ng~~p~~Yf~~LlLsgqfe~AI~ 489 (835)
T KOG2168|consen 410 LRRDLPEVADTIEDFLWFKLSLIRVDDQGSDSPTDELFLLEDQKDILEAYGESYFTNNGSQPLLYFQVLLLSGQFERAIE 489 (835)
T ss_pred cccccHHHHhHHHHHHHHHHHheeecCCCCcchHHhhhhHHHHHHHHHHhHHHhhccCCCChHHHHHHHHHHHhHHHHHH
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCCh--hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC
Q 003937 434 IHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQET--VSWTSMIVALAQHGLGEEAIQLFERMLELGIK 511 (785)
Q Consensus 434 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 511 (785)
.+......++..-.......=-.+.+.+.-....-+.-.+..+|.. .-+.-||.+|.+.=....+...++-..--...
T Consensus 490 fL~~~~~~~~dAVH~AI~l~~lglL~~~~s~~~~ll~~d~~d~~k~~~lnf~rLi~~Ytk~fe~~d~~~al~y~~~lr~~ 569 (835)
T KOG2168|consen 490 FLHREEPNRIDAVHVAIALAELGLLRTSSSTSQELLSIDPNDPPKSRRLNFARLIIAYTKSFEYTDTRVALQYYYLLRLN 569 (835)
T ss_pred HHHhhcCCcchhHHHHHHHHHhhhhccCCCCCCcccccCCCCCcccccccHHHHHHHHHHHHHhccchhhhheeeeeccc
Q ss_pred CCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhh------------------cCCHHHHHHHH
Q 003937 512 PDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGR------------------AGLLQEAYNFI 573 (785)
Q Consensus 512 p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~------------------~g~~~~A~~~~ 573 (785)
+|..--+..+.+.+..=...+ +-|..+.- .+.||-.-...+++-|.. .|++++|..++
T Consensus 570 ~d~q~~~l~l~~v~~lVl~t~--~~f~~iLG--~i~~dG~r~~G~l~~f~~~~~~~~~i~~~vA~~a~~~G~~~~sI~LY 645 (835)
T KOG2168|consen 570 KDPQGSNLFLKCVCELVLETE--EEFDLILG--KIKPDGSREPGLLDEFLPLIEDLQKIILEVASEADEDGLFEDAILLY 645 (835)
T ss_pred CChhHHHHHHHHHHHHHHhcc--ccHHHHhc--ccCCCCCCCcchHhhhccchhhHHHHHHHHHHHHHhcCCHHHHHHHH
Q ss_pred HhCCCCCCHH--HHHHHHHHHHhcC-----CHHHHHHHHHHHHhh--------CCCCchhHHHHHHH-----HHhcCChH
Q 003937 574 ENMPLEPDVV--AWGSLLSACRVHK-----NLDLGKIAAEKLLLI--------EPDNSGAYSALCNL-----YSSCGKWE 633 (785)
Q Consensus 574 ~~~~~~p~~~--~~~~ll~~~~~~g-----~~~~a~~~~~~~~~~--------~p~~~~~~~~l~~~-----~~~~g~~~ 633 (785)
.-.+ ++|.+ +.|.+++--...- +.+.-..+...+.++ ++....|+..|++. ..+.|.|+
T Consensus 646 ~lag-~yd~al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~~~~~~t~~lLl~~~~~f~~y~~~~~e 724 (835)
T KOG2168|consen 646 HLAG-DYDKALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSAKVVVKTLSLLLDLVSFFDLYHNGEWE 724 (835)
T ss_pred HHhh-hhhHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHhhhHHH
Q ss_pred HHHHHHHHHH
Q 003937 634 DAANIRKSMK 643 (785)
Q Consensus 634 ~a~~~~~~m~ 643 (785)
+|.+.++...
T Consensus 725 ~aL~~le~l~ 734 (835)
T KOG2168|consen 725 EALSILEHLD 734 (835)
T ss_pred HHHHHHHHHh
No 393
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=44.89 E-value=41 Score=26.42 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=16.4
Q ss_pred CChHHHHHHhhhcCCCCcccHHHHHHHHhhCCC
Q 003937 225 GRLDLARAQFDQMIERDVVTWNSMIAGYSQNGY 257 (785)
Q Consensus 225 g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~ 257 (785)
.+.+++.++++..+.++..+|.++..++-..|.
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 334444444444445555555555555555443
No 394
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.01 E-value=42 Score=33.40 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=37.0
Q ss_pred CChhH-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003937 477 QETVS-WTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLT 522 (785)
Q Consensus 477 p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 522 (785)
||..+ ||..|..-.+.||.++|+.+++|..+.|+.--..||...++
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 34444 67899999999999999999999999998777777765543
No 395
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.13 E-value=41 Score=38.38 Aligned_cols=98 Identities=17% Similarity=0.231 Sum_probs=65.0
Q ss_pred HHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 003937 519 GVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNL 598 (785)
Q Consensus 519 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 598 (785)
++|.-+.+.|-++-|+.+.+.=... .++...+|+++.|++.-.+.. |..+|..|.......|+.
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~ 688 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNH 688 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcch
Confidence 3444556677777776665432221 133457899999999888775 678899999999999999
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 003937 599 DLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRK 640 (785)
Q Consensus 599 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 640 (785)
+.|+..|++....+ -|.-+|.-.|+.++-.++.+
T Consensus 689 ~IaEm~yQ~~knfe--------kLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 689 QIAEMCYQRTKNFE--------KLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred HHHHHHHHHhhhhh--------heeEEEEEeCCHHHHHHHHH
Confidence 99999988765432 34444555565555444433
No 396
>PHA02875 ankyrin repeat protein; Provisional
Probab=42.17 E-value=4.6e+02 Score=27.99 Aligned_cols=230 Identities=14% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCchhH--HHHHHHHHHhcCChhHHHHHhhcCCCCChh--hHHHHHHHHHccCChhHHHHHHhhCCCC
Q 003937 33 KLVHARIIKCGLHLSVFL--KNSLMNFYAKTESISYAKKVFDEMPVKTLC--SWNTILSAYAKQGRLDLACEVFNLMPNR 108 (785)
Q Consensus 33 ~~~~~~~~~~g~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~m~~~ 108 (785)
.++.+.+++.|..++... ..+.+...++.|+.+-++-+++.-..++.. ...+-+...++.|+.+.+..+++.-...
T Consensus 15 ~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~ 94 (413)
T PHA02875 15 LDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA 94 (413)
T ss_pred HHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcc
Q ss_pred CccHHH---HHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHH--HHHHHHhccCChhHHHHHHHHHHHhCCCCChhHH
Q 003937 109 DSVSWT---TIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVT--SVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVT 183 (785)
Q Consensus 109 ~~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 183 (785)
+..... +.+...+..|+. ++++.+.+.|..|+..... +.+...+..|+.+..+.+++. ...+.......
T Consensus 95 ~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g 168 (413)
T PHA02875 95 DDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH--KACLDIEDCCG 168 (413)
T ss_pred cccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCC
Q ss_pred HHHHHHHHhCCChHHHHHHHhcCCCCCcchHH---HHHHHHHhcCChHHHHHHhhhcCCCCcc--------cHHHHHHHH
Q 003937 184 NSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWN---VVVSLHIHSGRLDLARAQFDQMIERDVV--------TWNSMIAGY 252 (785)
Q Consensus 184 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~~~~~~~~--------~~~~li~~~ 252 (785)
.+.+...+..|+.+-+..+++.-..++...-+ +.+...++.|+.+-+.-+++.-..++.. +.-.++.-+
T Consensus 169 ~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~ 248 (413)
T PHA02875 169 CTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNM 248 (413)
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhh
Q ss_pred hhCCCchHHHHHHHHh
Q 003937 253 SQNGYDFEALGMFANM 268 (785)
Q Consensus 253 ~~~g~~~~A~~l~~~m 268 (785)
+.....+....+....
T Consensus 249 ~~~~~~~~~~~li~~i 264 (413)
T PHA02875 249 CTNLESEAIDALIADI 264 (413)
T ss_pred cCCcccHHHHHHHHHH
No 397
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=41.82 E-value=50 Score=31.37 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=42.6
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 559 LLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
+..+.|+.+.|.+++.+. ...| ....|--+...--+.|+++.|.+.+++.++++|+|.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 445667777777777776 4445 466787777777788888888888888888887654
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=41.52 E-value=73 Score=29.82 Aligned_cols=35 Identities=11% Similarity=0.084 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 579 EPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 579 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
.|++.++..++.++...|+.++|.+..+++..+-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34444444444444444444444444444444444
No 399
>PRK10941 hypothetical protein; Provisional
Probab=40.99 E-value=1.6e+02 Score=29.32 Aligned_cols=65 Identities=8% Similarity=-0.008 Sum_probs=47.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 554 ASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 554 ~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
+.+-..|.+.++++.|+...+.+ .+.|+ +.-|.--.-.|.+-|....|..-++..++.-|+++.+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a 251 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS 251 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH
Confidence 34556677788888888887777 45554 5556666666788888888888888888888877654
No 400
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=40.67 E-value=4.5e+02 Score=27.49 Aligned_cols=107 Identities=15% Similarity=0.284 Sum_probs=74.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhh---CCC----C
Q 003937 555 SMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSL------------LSACRVHKNLDLGKIAAEKLLLI---EPD----N 615 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~---~p~----~ 615 (785)
.|...+-.+|++++|..++.+.++ .||+++ +..|...+|+-.|.-+.+++... +|+ -
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lK 211 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELK 211 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHH
Confidence 456777888999999888888752 233332 44577888888888888877542 232 1
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEE
Q 003937 616 SGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVF 665 (785)
Q Consensus 616 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~ 665 (785)
...|..++.+..+.+.+=++-+.++..-+.|-.+...--|+.+-..+-.|
T Consensus 212 lkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f 261 (439)
T KOG1498|consen 212 LKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSF 261 (439)
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeE
Confidence 23688999999999999999999999887766555334465544333333
No 401
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=39.94 E-value=33 Score=29.47 Aligned_cols=34 Identities=32% Similarity=0.531 Sum_probs=25.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTAC 524 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 524 (785)
....|.-.+|-.+|++|++.|-+||. |+.|+.++
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456677899999999999999986 55666544
No 402
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.82 E-value=1.1e+02 Score=20.91 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=24.4
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPDHITYVGVLT 522 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 522 (785)
..+.|-.+++..++++|.+.|+.-+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456777778888888888887777777666654
No 403
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.49 E-value=3.2e+02 Score=25.42 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=36.8
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHhC--------------CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 003937 417 AMLSVSSSLASLDHGKQIHASALRSG--------------EASSLSVSNALITMYSKAGNINAARRVFNLIH 474 (785)
Q Consensus 417 ~ll~a~~~~~~~~~a~~~~~~~~~~g--------------~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 474 (785)
+++-.|-+..++.+++.+++.+-+.. ..+--.+.|.-...+.++|.++-|..++++-.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLrese 208 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRESE 208 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhccc
Confidence 34445555566666666666555432 23444566777788888888888888887543
No 404
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=39.33 E-value=18 Score=19.31 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=9.4
Q ss_pred cchhHHHHHHhh
Q 003937 746 NDCHSAIKFICK 757 (785)
Q Consensus 746 ~dch~~~~~~s~ 757 (785)
...|+++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 457899999874
No 405
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.84 E-value=7e+02 Score=29.22 Aligned_cols=300 Identities=14% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHH
Q 003937 56 NFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVE 135 (785)
Q Consensus 56 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 135 (785)
..|...|.++.|.+.-..-|..-...+-.--..|...+++..|-+++.++ ..++-.+.--+....+.+ ++..|-.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~L~~~L~ 440 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-ALRTFLD 440 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-HHHHHHH
Q ss_pred hHHCCCCCChhhHHHHHHHHh------ccCChh------------HHHHHHHHHHHhC-CCCChhHHHHHHHHHHhCCCh
Q 003937 136 MVQDQVLPTQFTVTSVLASCT------ALGDLS------------AGKKVHSFVVKTG-LSGCVNVTNSLLNMYAKVGDE 196 (785)
Q Consensus 136 m~~~g~~p~~~t~~~ll~~~~------~~g~~~------------~a~~~~~~~~~~g-~~~~~~~~~~li~~~~~~g~~ 196 (785)
=+-..++|...+-..++.... +.++++ .-..+-+.+.+.- ..-+.....+........|+.
T Consensus 441 KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~~~ 520 (911)
T KOG2034|consen 441 KKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHGRQ 520 (911)
T ss_pred HHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHccCH
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCC
Q 003937 197 MMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKP 276 (785)
Q Consensus 197 ~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p 276 (785)
+.+..+-.-|. .|..++.-+++.+.+++|.+++..- ++....-..--.+...- +.+....+..+ +-.-
T Consensus 521 e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~~--~~~el~yk~ap~Li~~~-p~~tV~~wm~~----~d~~ 588 (911)
T KOG2034|consen 521 EELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLNQ--RNPELFYKYAPELITHS-PKETVSAWMAQ----KDLD 588 (911)
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc--cchhhHHHhhhHHHhcC-cHHHHHHHHHc----cccC
Q ss_pred ChhhHHHHHHHHhcc---cchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHH
Q 003937 277 DKFTLASTLSACANL---EKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLL 353 (785)
Q Consensus 277 ~~~t~~~ll~~~~~~---~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li 353 (785)
...-...+++-+.+. .....+....+.....-...+..+.|.++..|++..+-+.-..+-...........-...-+
T Consensus 589 ~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~~~ll~~le~~~~~~~~~~YDl~~al 668 (911)
T KOG2034|consen 589 PNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHERDDLLLYLEIIKFMKSRVHYDLDYAL 668 (911)
T ss_pred chhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCccchHHHHHHHhhccccceecHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHhc
Q 003937 354 DGYIKIGDIGPARRIFDSL 372 (785)
Q Consensus 354 ~~~~~~g~~~~A~~~f~~~ 372 (785)
+.|.+.+.-..+..++..|
T Consensus 669 Rlc~~~~~~ra~V~l~~~l 687 (911)
T KOG2034|consen 669 RLCLKFKKTRACVFLLCML 687 (911)
T ss_pred HHHHHhCccceeeeHHHHH
No 406
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=38.73 E-value=3.7e+02 Score=25.94 Aligned_cols=38 Identities=21% Similarity=0.363 Sum_probs=29.2
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH
Q 003937 477 QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI 515 (785)
Q Consensus 477 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 515 (785)
|.+.....|+..+. .++.++|.+++.++.+.|..|...
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 56666667776654 467899999999999999888764
No 407
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=38.42 E-value=1.4e+02 Score=33.27 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=25.6
Q ss_pred HHHHHHHhCCChHHHHHHHhcCCCCC------cchHHHHHHHHHhcCC
Q 003937 185 SLLNMYAKVGDEMMAKAVFDGMRLKN------VSSWNVVVSLHIHSGR 226 (785)
Q Consensus 185 ~li~~~~~~g~~~~A~~~~~~m~~~~------~~~~~~li~~~~~~g~ 226 (785)
+|+.+|...|++-.+.++++.....+ ...+|..|+...+.|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~s 80 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGS 80 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCC
Confidence 77788888888888888777665322 2234444444444444
No 408
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=38.42 E-value=1.7e+02 Score=24.94 Aligned_cols=71 Identities=14% Similarity=0.236 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC
Q 003937 497 EAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM 576 (785)
Q Consensus 497 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 576 (785)
+..+-++....-.+-|++......+.||-+.+++..|.++|+-++. .+.+....|-.+++ +-.-+++++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v~---------elkpvl~EL 135 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYVK---------ELKPVLNEL 135 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHHH---------HHHHHHHHh
Confidence 3444555666667899999999999999999999999999998875 44444445666553 445566666
Q ss_pred CC
Q 003937 577 PL 578 (785)
Q Consensus 577 ~~ 578 (785)
++
T Consensus 136 GI 137 (149)
T KOG4077|consen 136 GI 137 (149)
T ss_pred CC
Confidence 53
No 409
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=38.05 E-value=7.3e+02 Score=29.15 Aligned_cols=140 Identities=13% Similarity=0.084 Sum_probs=65.2
Q ss_pred HHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHH----HHHHHcCChhH
Q 003937 320 ISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAML----VGYEQNGLNKD 395 (785)
Q Consensus 320 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li----~~~~~~g~~~~ 395 (785)
|+--.+.|+++.|..++++....= ...+++.--....+.++.+-......++ .......++++
T Consensus 367 I~hAlaA~d~~~aa~lle~~~~~L-------------~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~e 433 (894)
T COG2909 367 IDHALAAGDPEMAADLLEQLEWQL-------------FNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAE 433 (894)
T ss_pred HHHHHhCCCHHHHHHHHHhhhhhh-------------hcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHH
Confidence 444556777777777776542110 1111344444444444432222222221 22334566777
Q ss_pred HHHHHHHHHHcCCCCCHh-------hHHHHHH-HHhccCchHHHHHHHHHHHHh----CCCCchHHHHHHHHHHHhcCCH
Q 003937 396 AVELFRSMVREGPKPNNY-------TLSAMLS-VSSSLASLDHGKQIHASALRS----GEASSLSVSNALITMYSKAGNI 463 (785)
Q Consensus 396 A~~~~~~m~~~g~~p~~~-------t~~~ll~-a~~~~~~~~~a~~~~~~~~~~----g~~~~~~~~~~li~~y~~~g~~ 463 (785)
|..+..+....-..|+.. .+..+-. .....++++.+..+-+..... -..+....+..+..+..-.|++
T Consensus 434 a~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~ 513 (894)
T COG2909 434 AETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGEL 513 (894)
T ss_pred HHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchH
Confidence 777766655432222211 1222211 112345566666655555443 2233445555555666666777
Q ss_pred HHHHHHHHh
Q 003937 464 NAARRVFNL 472 (785)
Q Consensus 464 ~~A~~~~~~ 472 (785)
++|..+...
T Consensus 514 ~~Al~~~~~ 522 (894)
T COG2909 514 TQALALMQQ 522 (894)
T ss_pred HHHHHHHHH
Confidence 777666543
No 410
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=37.26 E-value=1.1e+02 Score=20.94 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=16.8
Q ss_pred hCCChhHHHHHHHHhHHCCCCCChhhHHHHH
Q 003937 122 EIGRFKNAIRMFVEMVQDQVLPTQFTVTSVL 152 (785)
Q Consensus 122 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll 152 (785)
+.|-..++..++++|.+.|+.-+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4455555555555565555555555554444
No 411
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=37.07 E-value=63 Score=24.90 Aligned_cols=13 Identities=15% Similarity=0.171 Sum_probs=4.9
Q ss_pred HHHHHhhcCCHHH
Q 003937 556 MVDLLGRAGLLQE 568 (785)
Q Consensus 556 li~~~~~~g~~~~ 568 (785)
|+.+|+..|++.+
T Consensus 49 l~qA~~e~Gkyr~ 61 (80)
T PF10579_consen 49 LIQAHMEWGKYRE 61 (80)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 412
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=36.98 E-value=93 Score=24.02 Aligned_cols=46 Identities=13% Similarity=0.103 Sum_probs=26.7
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHH
Q 003937 491 QHGLGEEAIQLFERMLELGIKPDH--ITYVGVLTACTHGGLVEQGQRY 536 (785)
Q Consensus 491 ~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~ 536 (785)
...+.++|+..|...++.-..|.. .++..++.+++..|.+.+.+.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677777666654333222 2566666677777776666554
No 413
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=36.86 E-value=1.1e+02 Score=24.49 Aligned_cols=52 Identities=13% Similarity=0.055 Sum_probs=34.8
Q ss_pred HhcCCHHHHHHHHHHHHhhCCC----C-----chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPD----N-----SGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~----~-----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
.+.|++..|.+.+.+.++.... . ..+...++.+....|++++|...+++..+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4567777777777666653221 1 12344567778888999999998888753
No 414
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=36.58 E-value=4.8e+02 Score=26.60 Aligned_cols=61 Identities=15% Similarity=0.073 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLE 507 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 507 (785)
+..-..+.....+.|..+.-..+++.....++......++.+++...+.+...++++....
T Consensus 169 ~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 169 PDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 3333444444444555444444444443333444445555555555555544455555444
No 415
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=35.88 E-value=2.6e+02 Score=23.97 Aligned_cols=43 Identities=14% Similarity=0.249 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHH
Q 003937 497 EAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNM 539 (785)
Q Consensus 497 ~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~ 539 (785)
.+.++|..|...|+--... -|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 7777777777776655543 555566666667777777777653
No 416
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.98 E-value=3.1e+02 Score=29.42 Aligned_cols=46 Identities=13% Similarity=0.033 Sum_probs=32.6
Q ss_pred chhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCC
Q 003937 293 KLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGI 341 (785)
Q Consensus 293 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~ 341 (785)
.+++-.++++.+.+.| .+| +...-|+.|.+.+++++|..-+++-.+
T Consensus 69 ~~~e~i~lL~~l~~~g-~ad--~lp~TIDSyTR~n~y~~A~~~l~~s~~ 114 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG-GAD--FLPSTIDAYTRQNRYDEAAVGIKESIK 114 (480)
T ss_pred cHHHHHHHHHHHHHcc-CCC--ccceeeecccccccHHHHHHHHHhhhh
Confidence 4556666777766665 222 445678999999999999999887543
No 417
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.88 E-value=72 Score=23.30 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=21.0
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 615 NSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 615 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
|-.....++.+|...|++++|.++.+.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34455667888888888888888887774
No 418
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=34.81 E-value=75 Score=25.37 Aligned_cols=37 Identities=19% Similarity=0.351 Sum_probs=22.9
Q ss_pred HHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCC
Q 003937 88 AYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIG 124 (785)
Q Consensus 88 ~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g 124 (785)
..+...+.+.+.++++.++.+...+|..+..++-..+
T Consensus 43 I~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~ 79 (90)
T cd08332 43 IMAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETS 79 (90)
T ss_pred HHcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcC
Confidence 3334445666677777777766667777776665443
No 419
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.72 E-value=4.7e+02 Score=26.00 Aligned_cols=49 Identities=18% Similarity=0.139 Sum_probs=32.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCHHH-------HHHHHHHhhccCCHHHHHH
Q 003937 487 VALAQHGLGEEAIQLFERMLELGIKPDHIT-------YVGVLTACTHGGLVEQGQR 535 (785)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~a~~~~g~~~~a~~ 535 (785)
+-..+.+++++|+..+.+....|+..|..+ ...+...|...|+...-.+
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHH
Confidence 345567788888888888888887766543 4445556666666544333
No 420
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=34.56 E-value=1.7e+02 Score=31.95 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=14.6
Q ss_pred HHHHHHHhhCCCchHHHHHHHHh
Q 003937 246 NSMIAGYSQNGYDFEALGMFANM 268 (785)
Q Consensus 246 ~~li~~~~~~g~~~~A~~l~~~m 268 (785)
..++.-|.+.++.++|+.++..|
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~sm 434 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSM 434 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhC
Confidence 34556666666666666666666
No 421
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=34.15 E-value=4.9e+02 Score=26.04 Aligned_cols=189 Identities=12% Similarity=-0.006 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHH----cCChHHHHH
Q 003937 426 ASLDHGKQIHASALRSGEA-SSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQ----HGLGEEAIQ 500 (785)
Q Consensus 426 ~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~ 500 (785)
+++..+...+......+.. .................+..+|..+|..............|...|.. ..+..+|..
T Consensus 55 ~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~ 134 (292)
T COG0790 55 PDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALK 134 (292)
T ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHH
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHhhcc-----CCHH--HHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHH
Q 003937 501 LFERMLELGIKPDHITYVGVLTACTHG-----GLVE--QGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFI 573 (785)
Q Consensus 501 ~~~~m~~~g~~p~~~t~~~ll~a~~~~-----g~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 573 (785)
.|++..+.|..+...+...+...+... -..+ .|...+..+.......-....-..+...++-..+.++|...|
T Consensus 135 ~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy 214 (292)
T COG0790 135 YYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWY 214 (292)
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHH
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcC---------------CHHHHHHHHHHHHhhCCCC
Q 003937 574 ENMPLEPDVVAWGSLLSACRVHK---------------NLDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 574 ~~~~~~p~~~~~~~ll~~~~~~g---------------~~~~a~~~~~~~~~~~p~~ 615 (785)
...-..-+ ..-...+..+...| +...|...+.......+..
T Consensus 215 ~~Aa~~g~-~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 215 KKAAEQGD-GAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHCCC-HHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
No 422
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=33.68 E-value=2.4e+02 Score=28.65 Aligned_cols=86 Identities=14% Similarity=0.058 Sum_probs=64.2
Q ss_pred HHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 003937 557 VDLLGRAGLLQEAYNFIENM----PLEPD--VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCG 630 (785)
Q Consensus 557 i~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 630 (785)
.+-|.+..++..|.+.|.+- --.|| .+.|+.=..+-.-.||+..++.-..+++.++|.+.-.|..=+.++....
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe 167 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELE 167 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHH
Confidence 34567777888888887665 12343 5667666666667789999999999999999998888888888888888
Q ss_pred ChHHHHHHHHHH
Q 003937 631 KWEDAANIRKSM 642 (785)
Q Consensus 631 ~~~~a~~~~~~m 642 (785)
++++|..+.++-
T Consensus 168 ~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 168 RFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHhhh
Confidence 877777665544
No 423
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=33.64 E-value=2.8e+02 Score=23.01 Aligned_cols=47 Identities=13% Similarity=-0.039 Sum_probs=21.8
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCC
Q 003937 160 DLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMR 207 (785)
Q Consensus 160 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 207 (785)
..++|..|.+.+...+- ....+.-.-+..+.+.|++++|...=....
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~ 67 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHC 67 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCC
Confidence 45566666666665552 223333333344555666666643333334
No 424
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=33.45 E-value=3.4e+02 Score=23.99 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=37.6
Q ss_pred ChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhcc
Q 003937 478 ETVSWTSMIVALAQHGL-GEEAIQLFERMLELGIKPDHITYVGVLTACTHG 527 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~ 527 (785)
+..+|.+++.+..+..- ---+..+|.-|++.+.+++..-|..++.+|.+.
T Consensus 78 ~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 78 DNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred ccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 66678888888865554 334677888888877888888888888887765
No 425
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.34 E-value=7e+02 Score=29.24 Aligned_cols=131 Identities=15% Similarity=0.140 Sum_probs=88.6
Q ss_pred HHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHH
Q 003937 455 TMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQ 534 (785)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~ 534 (785)
+....||+++.|++.-.++. |...|..|...-..+|+.+-|...|++... |..|--.|.-.|+.++-.
T Consensus 651 ~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~ 718 (1202)
T KOG0292|consen 651 ELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLS 718 (1202)
T ss_pred eeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHH
Confidence 34557899999888776664 677899999999999999999988888765 233333456678888776
Q ss_pred HHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 535 RYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 535 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
++.+.... ..|... -.+..+ -.|++++-.++++..+.-|- .|.+ -..||.-++|.++.++.-.
T Consensus 719 Km~~iae~----r~D~~~-~~qnal--Yl~dv~ervkIl~n~g~~~l--aylt----a~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 719 KMMKIAEI----RNDATG-QFQNAL--YLGDVKERVKILENGGQLPL--AYLT----AAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHh----hhhhHH-HHHHHH--HhccHHHHHHHHHhcCcccH--HHHH----HhhcCcHHHHHHHHHhhcc
Confidence 66554432 223211 111122 36889999999988875442 2211 2468888999999888866
No 426
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=32.83 E-value=9.6e+02 Score=28.99 Aligned_cols=254 Identities=11% Similarity=-0.041 Sum_probs=114.4
Q ss_pred HHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC
Q 003937 366 RRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEAS 445 (785)
Q Consensus 366 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 445 (785)
..+...+.++|+..--..+..+.+.+. +++...+.+.+. .+|...-...+.++...+........+..+.+. +
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~-~~~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~ 696 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTP-PGFGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---P 696 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcc-hhHHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---C
Confidence 344555556666666666666666664 334444444443 233333334444443332211111222222222 4
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhh
Q 003937 446 SLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACT 525 (785)
Q Consensus 446 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 525 (785)
|..+-.+.++.+...+.- ....+...+..+ |...-...+.++.+.+..+. +.... -.+|...-.....++.
T Consensus 697 d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~-d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 697 DPVVRAAALDVLRALRAG-DAALFAAALGDP-DHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CHHHHHHHHHHHHhhccC-CHHHHHHHhcCC-CHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHH
Confidence 444444555555543311 122233333333 55555555556555444322 11222 2455555455555555
Q ss_pred ccCCHHH-HHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 003937 526 HGGLVEQ-GQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIA 604 (785)
Q Consensus 526 ~~g~~~~-a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 604 (785)
..+..+. +...+..+.+ .++...-...+..+++.|..+.+...+..+-..+|..+-..-+.++...+. +++...
T Consensus 768 ~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~ 842 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPA 842 (897)
T ss_pred HhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHH
Confidence 5554332 2333334333 345556666677777777655443333333224555555555555555554 234444
Q ss_pred HHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 605 AEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 605 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
+..+++ +| +...-...+.++.+.+.-.++...+...
T Consensus 843 L~~~L~-D~-~~~VR~~A~~aL~~~~~~~~a~~~L~~a 878 (897)
T PRK13800 843 LVEALT-DP-HLDVRKAAVLALTRWPGDPAARDALTTA 878 (897)
T ss_pred HHHHhc-CC-CHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 333332 33 3444444455555542223444444443
No 427
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=32.60 E-value=2.2e+02 Score=24.37 Aligned_cols=46 Identities=9% Similarity=0.301 Sum_probs=34.7
Q ss_pred HHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 003937 129 AIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKT 174 (785)
Q Consensus 129 a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~ 174 (785)
..+.+..+....+.|++...-..+++|.+.+|+..|.++++-+...
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555556677888888888888888888888888888876543
No 428
>PRK13342 recombination factor protein RarA; Reviewed
Probab=31.82 E-value=6.7e+02 Score=26.87 Aligned_cols=48 Identities=29% Similarity=0.298 Sum_probs=35.0
Q ss_pred HHHHHHHHHHH---cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 003937 481 SWTSMIVALAQ---HGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGG 528 (785)
Q Consensus 481 ~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 528 (785)
.+..+++++.+ .++.+.|+..+.+|.+.|..|..+.-..+..++...|
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 34555666655 4789999999999999998888776666655555444
No 429
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=31.63 E-value=7.2e+02 Score=27.16 Aligned_cols=218 Identities=16% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHH
Q 003937 286 SACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPA 365 (785)
Q Consensus 286 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 365 (785)
..++..++--.|.-+-..+.-+.-..|.....++++.+...-+..-.+.+..++...+.+-..|-.++..|.+. .-+.-
T Consensus 39 ~hl~~~k~si~~lyisg~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l 117 (711)
T COG1747 39 EHLAHSKNSIIALYISGIISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQL 117 (711)
T ss_pred HHHHHhhhhhHHHHHHHHHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-Cchhh
Q ss_pred HHHHHhcCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CCHhhHHHHHHHHhc--cCchHHHHHHHHHHH
Q 003937 366 RRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPK-PNNYTLSAMLSVSSS--LASLDHGKQIHASAL 439 (785)
Q Consensus 366 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~ 439 (785)
..+++++.+ .|++.-..+..-|-+ ++...+...|.+....=+. .......-+=.-.-. ..+.+....+...+.
T Consensus 118 ~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiq 196 (711)
T COG1747 118 YSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQ 196 (711)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHH
Q ss_pred Hh-CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc---cCCChhHHHHHHHHHHH--------------------cCCh
Q 003937 440 RS-GEASSLSVSNALITMYSKAGNINAARRVFNLIH---WRQETVSWTSMIVALAQ--------------------HGLG 495 (785)
Q Consensus 440 ~~-g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~p~~~~~~~li~~~~~--------------------~g~~ 495 (785)
.. |...-...+.-+-.-|....++++|.+++..+. .+ |+-+-..++.-+.. -.++
T Consensus 197 t~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf 275 (711)
T COG1747 197 TKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNF 275 (711)
T ss_pred HhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccH
Q ss_pred HHHHHHHHHHH
Q 003937 496 EEAIQLFERML 506 (785)
Q Consensus 496 ~~A~~~~~~m~ 506 (785)
.+++.=|+...
T Consensus 276 ~~~l~dFek~m 286 (711)
T COG1747 276 FEALNDFEKLM 286 (711)
T ss_pred HHHHHHHHHHh
No 430
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=31.40 E-value=72 Score=31.63 Aligned_cols=57 Identities=25% Similarity=0.276 Sum_probs=29.2
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 562 RAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 562 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
+.|+.++|..+|+.. .+.|+ +....-+..-.-.++++-+|-+++-+++.+.|.+..+
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 456666666666544 34443 2222222222334455566666666666666655543
No 431
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=31.02 E-value=2e+02 Score=30.58 Aligned_cols=42 Identities=26% Similarity=0.334 Sum_probs=28.7
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003937 573 IENMPLEPD--VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 573 ~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
|....++|. ..++.+-+..+.+++|+..|-.+.++++++.|.
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 333355554 335666677788999999999999999999884
No 432
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=30.86 E-value=2.4e+02 Score=22.58 Aligned_cols=24 Identities=17% Similarity=0.111 Sum_probs=17.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 588 LLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 588 ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
+.......|+.++|...+++++++
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 334466778888888888888774
No 433
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=30.69 E-value=76 Score=23.18 Aligned_cols=44 Identities=23% Similarity=0.390 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCC--CCHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003937 362 IGPARRIFDSLRD--RDVVAWTAMLVGYEQNGLNKDAVELFRSMVR 405 (785)
Q Consensus 362 ~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 405 (785)
++....+.+.+.. .|-.-.-.+|.||.+.|++++|.+..+++..
T Consensus 6 ~~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344444444432 2333344578899999999999998888764
No 434
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=30.62 E-value=1.1e+02 Score=24.42 Aligned_cols=29 Identities=7% Similarity=0.150 Sum_probs=14.0
Q ss_pred ChHHHHHHhhhcCCCCcccHHHHHHHHhh
Q 003937 226 RLDLARAQFDQMIERDVVTWNSMIAGYSQ 254 (785)
Q Consensus 226 ~~~~A~~l~~~~~~~~~~~~~~li~~~~~ 254 (785)
+.+++.++++.++.++..+|..+..++-.
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 33444444444445555555555555543
No 435
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=30.38 E-value=4.5e+02 Score=24.47 Aligned_cols=56 Identities=11% Similarity=0.157 Sum_probs=33.4
Q ss_pred HHHHHHhcccchhhHHHHHHHHHHhcC--------------CCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 003937 283 STLSACANLEKLKLGKQIHAYIIRTEF--------------DATGPVGNALISCYAKVGGVEIAQKIVEQ 338 (785)
Q Consensus 283 ~ll~~~~~~~~~~~a~~~~~~~~~~g~--------------~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 338 (785)
+++-.|-+..++.++++++..+-+..+ .+.-.+.|.-...+.++|.+|.|..++++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 344555556666666666665554322 22234556677777788877777777764
No 436
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=30.32 E-value=3.2e+02 Score=27.89 Aligned_cols=72 Identities=11% Similarity=0.146 Sum_probs=46.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhccc------CCChhHH--HHHHHHHHHcCChHHHHHHHHHHHH-----CCCCCCHH-HHH
Q 003937 453 LITMYSKAGNINAARRVFNLIHW------RQETVSW--TSMIVALAQHGLGEEAIQLFERMLE-----LGIKPDHI-TYV 518 (785)
Q Consensus 453 li~~y~~~g~~~~A~~~~~~~~~------~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~-t~~ 518 (785)
++...-++++.++|.+.++++.. .||.+.| ..+...+...|+..++.+++++... .|++|+.. .|.
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 33344455677777777777642 2566554 3455667778888888888887776 57777654 455
Q ss_pred HHHHHh
Q 003937 519 GVLTAC 524 (785)
Q Consensus 519 ~ll~a~ 524 (785)
.+-+-|
T Consensus 161 ~lssqY 166 (380)
T KOG2908|consen 161 SLSSQY 166 (380)
T ss_pred HHHHHH
Confidence 555443
No 437
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=30.31 E-value=8.7e+02 Score=27.70 Aligned_cols=186 Identities=13% Similarity=0.132 Sum_probs=104.2
Q ss_pred ChHHHHHHHHHhhcCCCcchHHHHHHHHH-HcCCCCc--hhHHHHHHHHHH-hcCChhHHHHHhhcCCC---CChh----
Q 003937 12 PLEFYAHLLQSNLKSRNPFVGKLVHARII-KCGLHLS--VFLKNSLMNFYA-KTESISYAKKVFDEMPV---KTLC---- 80 (785)
Q Consensus 12 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~g~~~~--~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~---~~~~---- 80 (785)
....|..+|.. |...++.+. +..+.|. ..++-.+...|. ...+++.|+..+++... ++..
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 34556666654 344555555 3333333 345566677665 67889999998887531 1111
Q ss_pred --hHHHHHHHHHccCChhHHHHHHhhCCC----CCccHHHH----H-HHHHHhCCChhHHHHHHHHhHHCC---CCCChh
Q 003937 81 --SWNTILSAYAKQGRLDLACEVFNLMPN----RDSVSWTT----I-IVTYNEIGRFKNAIRMFVEMVQDQ---VLPTQF 146 (785)
Q Consensus 81 --~~~~li~~~~~~g~~~~A~~~f~~m~~----~~~~~~~~----l-i~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~ 146 (785)
.-..++..|.+.+.-. |.+..++..+ .....|.- + +..+...+++..|++.++.....- ..|-..
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~ 178 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF 178 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence 2234555666666544 7777766442 11222322 2 222223479999999998876532 344455
Q ss_pred hHHHHHHHHh--ccCChhHHHHHHHHHHHhCC---------CCChhHHHHHHHHH--HhCCChHHHHHHHhcCC
Q 003937 147 TVTSVLASCT--ALGDLSAGKKVHSFVVKTGL---------SGCVNVTNSLLNMY--AKVGDEMMAKAVFDGMR 207 (785)
Q Consensus 147 t~~~ll~~~~--~~g~~~~a~~~~~~~~~~g~---------~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~ 207 (785)
.+..++.+.. ..+..+.+.+..+.+..... .|...++..+++.+ ...|+++.+...++++.
T Consensus 179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6666666654 34445666666666543322 23455666666554 45677777776665554
No 438
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=30.22 E-value=4e+02 Score=26.50 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=9.6
Q ss_pred HHHHHhCCChhHHHHHHHHhH
Q 003937 117 IVTYNEIGRFKNAIRMFVEMV 137 (785)
Q Consensus 117 i~~~~~~g~~~~a~~~~~~m~ 137 (785)
|-.|.+.+.+..+.++-...+
T Consensus 125 ILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 125 ILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 334444444444444444444
No 439
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=30.16 E-value=90 Score=31.20 Aligned_cols=39 Identities=15% Similarity=0.161 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHH
Q 003937 378 VAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLS 416 (785)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 416 (785)
.-||..|....+.|+.++|+.++++..+.|+.--..||.
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 346789999999999999999999999988765555554
No 440
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=29.86 E-value=3.6e+02 Score=30.68 Aligned_cols=27 Identities=11% Similarity=-0.107 Sum_probs=19.0
Q ss_pred cccchhHHHHHHhhhcCeeEEEecCCc
Q 003937 744 VCNDCHSAIKFICKLVDREIVVRDATR 770 (785)
Q Consensus 744 ~c~dch~~~~~~s~~~~~~~~~~~~~~ 770 (785)
.|..-|++.--.|++-+-.+--||-|.
T Consensus 490 ~~k~ih~w~F~assIk~Vs~sKrddRc 516 (1226)
T KOG4279|consen 490 KLKGIHRWHFAASSIKGVSESKRDDRC 516 (1226)
T ss_pred hhcCceeeeeehhceecccccccccce
Confidence 467777777777777777777776554
No 441
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=29.85 E-value=5.2e+02 Score=25.78 Aligned_cols=17 Identities=0% Similarity=0.057 Sum_probs=10.5
Q ss_pred HHHHHHcCChhHHHHHH
Q 003937 384 LVGYEQNGLNKDAVELF 400 (785)
Q Consensus 384 i~~~~~~g~~~~A~~~~ 400 (785)
|.+++..|++.+++...
T Consensus 90 IQALAEmnrWreVLsWv 106 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWV 106 (309)
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 56666666666665543
No 442
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=29.85 E-value=61 Score=24.89 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHcCcccCCCcc
Q 003937 675 RDAIYNKMAKIWDEIKEMGFVPDTASV 701 (785)
Q Consensus 675 ~~~~~~~~~~l~~~~~~~g~~pd~~~~ 701 (785)
..++.+.+++...+++..||.||...+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 345677788889999999999997554
No 443
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=29.78 E-value=19 Score=26.38 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=17.1
Q ss_pred eeEEEecCCcccccCCCccCCC
Q 003937 761 REIVVRDATRFHHFKKGLCSCR 782 (785)
Q Consensus 761 ~~~~~~~~~~~h~~~~g~csc~ 782 (785)
..|-+.|....|+|+||+-+-.
T Consensus 8 ksi~LkDGstvyiFKDGKMamE 29 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMAME 29 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EEEE
T ss_pred eeEecCCCCEEEEEcCCceehh
Confidence 4577899999999999986543
No 444
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=29.75 E-value=6.9e+02 Score=26.40 Aligned_cols=54 Identities=6% Similarity=-0.040 Sum_probs=30.6
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHh--hHHHHHHHHh--ccCchHHHHHHHHHHHHh
Q 003937 387 YEQNGLNKDAVELFRSMVREGPKPNNY--TLSAMLSVSS--SLASLDHGKQIHASALRS 441 (785)
Q Consensus 387 ~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~--~~~~~~~a~~~~~~~~~~ 441 (785)
+.+.+++..|.++|.++... +.++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34667888888888888776 444444 2333333333 233455666666555443
No 445
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=29.68 E-value=8.5e+02 Score=27.44 Aligned_cols=73 Identities=12% Similarity=-0.004 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHH
Q 003937 365 ARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASAL 439 (785)
Q Consensus 365 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 439 (785)
...++.+.+-++...-.-++..|.+.|..+.|.++.+.+-..-. ...-|...+.-+.+.++......+-..+.
T Consensus 393 i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 393 IEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344444444444445566667777777777777666543321 12345555666666666655555544443
No 446
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.37 E-value=7e+02 Score=26.34 Aligned_cols=111 Identities=13% Similarity=0.060 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCCCC------CcchHHHHHHHHHhcCChHHHHHHhhhcCC-------------CC
Q 003937 181 NVTNSLLNMYAKVGDEMMAKAVFDGMRLK------NVSSWNVVVSLHIHSGRLDLARAQFDQMIE-------------RD 241 (785)
Q Consensus 181 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-------------~~ 241 (785)
..+.-+.+.|..||+++.|.+.+-+.++- -+..|..+|..-.-.|++......-.+... +.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 35677788899999999999999886522 123455555555556666554444443311 11
Q ss_pred cccHHHHHHHHhhCCCchHHHHHHHHhhhcCC-----CCCChhhHHHHHHHHhcccc
Q 003937 242 VVTWNSMIAGYSQNGYDFEALGMFANMLKDSS-----LKPDKFTLASTLSACANLEK 293 (785)
Q Consensus 242 ~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g-----~~p~~~t~~~ll~~~~~~~~ 293 (785)
...+..+.. ...+++..|...|-....... +.|...+.-..+.+.+-.+.
T Consensus 231 l~C~agLa~--L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr 285 (466)
T KOG0686|consen 231 LKCAAGLAN--LLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDR 285 (466)
T ss_pred hHHHHHHHH--HHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCH
Confidence 222222222 223466677666654412211 34444444455555554443
No 447
>PRK14700 recombination factor protein RarA; Provisional
Probab=29.19 E-value=5.8e+02 Score=25.80 Aligned_cols=53 Identities=13% Similarity=0.177 Sum_probs=39.2
Q ss_pred CCHhHHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCc
Q 003937 375 RDVVAWTAMLVGYEQ---NGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLAS 427 (785)
Q Consensus 375 ~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 427 (785)
++...+..+|+++.+ -.+++.|+-.+.+|++.|-.|....-..++-+....|.
T Consensus 121 k~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGl 176 (300)
T PRK14700 121 REGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGN 176 (300)
T ss_pred CCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 333344456777765 46889999999999999999988877777777666553
No 448
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=29.11 E-value=6.4e+02 Score=25.88 Aligned_cols=72 Identities=13% Similarity=0.000 Sum_probs=36.7
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHh---cCCHHHHHHHHH
Q 003937 298 KQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIK---IGDIGPARRIFD 370 (785)
Q Consensus 298 ~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~---~g~~~~A~~~f~ 370 (785)
..+++.+++.. +.+..+...++..+.+..+.++..+.++++....| +...|...++.... .-.++....+|.
T Consensus 51 lsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 51 LSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34445544442 34444555566666666666666666666555544 44555555554433 223444444443
No 449
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=28.84 E-value=5e+02 Score=25.24 Aligned_cols=82 Identities=9% Similarity=-0.012 Sum_probs=52.9
Q ss_pred HHhcCCHHHHHHHHHhc-ccCCChhH-HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHhhccCCHHHH
Q 003937 457 YSKAGNINAARRVFNLI-HWRQETVS-WTSMIVALAQHGLGEEAIQLFERMLELGIKPDHIT-YVGVLTACTHGGLVEQG 533 (785)
Q Consensus 457 y~~~g~~~~A~~~~~~~-~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~g~~~~a 533 (785)
|.....++.|...+.+. ...|.+.+ |+.-+-++.+..+++.+.+=-.+.++ +.||.+- ...+..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 33445667777766543 34566644 56667777777888887777777766 6787763 33344455666677777
Q ss_pred HHHHHHh
Q 003937 534 QRYYNMM 540 (785)
Q Consensus 534 ~~~~~~m 540 (785)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 7777655
No 450
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=28.57 E-value=18 Score=25.50 Aligned_cols=12 Identities=25% Similarity=0.722 Sum_probs=8.9
Q ss_pred ccccccchhHHH
Q 003937 741 NLRVCNDCHSAI 752 (785)
Q Consensus 741 nl~~c~dch~~~ 752 (785)
-.-+|||||.--
T Consensus 19 miYiCgdC~~en 30 (62)
T KOG3507|consen 19 MIYICGDCGQEN 30 (62)
T ss_pred EEEEeccccccc
Confidence 346899999643
No 451
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=28.23 E-value=2e+02 Score=30.44 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=31.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhc-----------CCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003937 351 TLLDGYIKIGDIGPARRIFDSL-----------RDRDVVAWTAMLVGYEQNGLNKDAVELFRSMV 404 (785)
Q Consensus 351 ~li~~~~~~g~~~~A~~~f~~~-----------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 404 (785)
.|++.++-.|++..|.++++.+ +.-.+.++--+.-+|.-.+++.+|++.|...+
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444555555544443 23344555666667777788888888877654
No 452
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=28.14 E-value=3.8e+02 Score=22.93 Aligned_cols=42 Identities=14% Similarity=0.101 Sum_probs=31.9
Q ss_pred HHHHHHHHHHh--hCCCCchhHHHHHHHHHhcCChHHHHHHHHH
Q 003937 600 LGKIAAEKLLL--IEPDNSGAYSALCNLYSSCGKWEDAANIRKS 641 (785)
Q Consensus 600 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 641 (785)
.+..+|+.+.. +.-.-+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67778887766 4455667788888888999999999888865
No 453
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=27.37 E-value=1.1e+02 Score=30.40 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=41.7
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 592 CRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 592 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
.++.|+.++|..+|+.++.+.|.++....-++...-...+.-+|-.++-+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~A 176 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKA 176 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhhee
Confidence 468899999999999999999999988877777766666777776666554
No 454
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.19 E-value=4.1e+02 Score=25.85 Aligned_cols=53 Identities=11% Similarity=-0.034 Sum_probs=43.1
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...|++-++++....++..+|.|..+|..-+.+.+..=+.++|..=+....+.
T Consensus 241 L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 241 LKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 46678888888888889999999999988888877777788888877777653
No 455
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=27.12 E-value=5.8e+02 Score=24.67 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=20.2
Q ss_pred HHHcCChHHHHHHHHHHHHCCCC-CCH
Q 003937 489 LAQHGLGEEAIQLFERMLELGIK-PDH 514 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~-p~~ 514 (785)
....|+++.|+++.+-.++.|.. |+.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~ 119 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQ 119 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCcc
Confidence 35678999999999999988854 443
No 456
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=26.77 E-value=3.3e+02 Score=21.69 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHHHHhcCChH-HHHHHHHHH
Q 003937 581 DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD--NSGAYSALCNLYSSCGKWE-DAANIRKSM 642 (785)
Q Consensus 581 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~-~a~~~~~~m 642 (785)
|....-.+...+...|+++.|...+-.+++.+|+ +...-..|+.++.-.|.-+ -+.+++++|
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 4566677777888889999888888888887654 4667777888887777743 555666655
No 457
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=25.92 E-value=1.7e+02 Score=23.13 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=14.2
Q ss_pred hHHHHHHhhhcCCCCcccHHHHHHHHhhCC
Q 003937 227 LDLARAQFDQMIERDVVTWNSMIAGYSQNG 256 (785)
Q Consensus 227 ~~~A~~l~~~~~~~~~~~~~~li~~~~~~g 256 (785)
.++|..+++.++.++..+|.....++-..|
T Consensus 44 ~~qa~~Lld~L~trG~~Af~~F~~aL~~~~ 73 (86)
T cd08323 44 KEKAVMLINMILTKDNHAYVSFYNALLHEG 73 (86)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 344444444444555555555555544443
No 458
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=25.71 E-value=1.6e+02 Score=18.26 Aligned_cols=24 Identities=17% Similarity=0.409 Sum_probs=16.5
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHH
Q 003937 597 NLDLGKIAAEKLLLIEPDNSGAYSA 621 (785)
Q Consensus 597 ~~~~a~~~~~~~~~~~p~~~~~~~~ 621 (785)
.++.|..++++.+...| ++.++.-
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~Wik 25 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIK 25 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHH
Confidence 46778888888887777 5555543
No 459
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=24.75 E-value=3.9e+02 Score=22.91 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHH-HHHHHHHcCChHHHHHHHHHH
Q 003937 446 SLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTS-MIVALAQHGLGEEAIQLFERM 505 (785)
Q Consensus 446 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~m 505 (785)
-..+..++.-++.-+|..++|.++++..+.-++-...|. ++..|++..+.++.+++=++.
T Consensus 65 kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 65 KLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344556777777778888888888888776544444443 678888887777766655443
No 460
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=24.61 E-value=2.4e+02 Score=27.62 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=10.7
Q ss_pred HHHHHhCCChhHHHHHHHH
Q 003937 117 IVTYNEIGRFKNAIRMFVE 135 (785)
Q Consensus 117 i~~~~~~g~~~~a~~~~~~ 135 (785)
++.|...|++.+|+.-|+.
T Consensus 17 ~rl~l~~~~~~~Av~q~~~ 35 (247)
T PF11817_consen 17 CRLYLWLNQPTEAVRQFRA 35 (247)
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 3555555666666555544
No 461
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.01 E-value=8.3e+02 Score=25.39 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=13.7
Q ss_pred HhccCChhHHHHHHHHHHH
Q 003937 155 CTALGDLSAGKKVHSFVVK 173 (785)
Q Consensus 155 ~~~~g~~~~a~~~~~~~~~ 173 (785)
|...++++.|+-++...+.
T Consensus 193 ciglk~fe~Al~~~e~~v~ 211 (422)
T KOG2582|consen 193 CIGLKRFERALYLLEICVT 211 (422)
T ss_pred eeccccHHHHHHHHHHHHh
Confidence 4566778888888777664
No 462
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=23.88 E-value=3.2e+02 Score=27.60 Aligned_cols=51 Identities=16% Similarity=0.178 Sum_probs=30.1
Q ss_pred HHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHh
Q 003937 216 VVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANM 268 (785)
Q Consensus 216 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 268 (785)
.++..+.+.+++....+.+..+ ..+..-...+..+...|++..|+++..+.
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i--~~v~~~~~~l~~ll~~~dy~~Al~li~~~ 153 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQI--KTVQQTQSRLQELLEEGDYPGALDLIEEC 153 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3344444444444444444443 23334445677778888888888888776
No 463
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=23.50 E-value=4.6e+02 Score=22.29 Aligned_cols=68 Identities=21% Similarity=0.279 Sum_probs=0.0
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHH---hcCCCCHhHHHHHHH---
Q 003937 312 TGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFD---SLRDRDVVAWTAMLV--- 385 (785)
Q Consensus 312 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~---~~~~~~~~~~~~li~--- 385 (785)
|...+..|-.++.+.|++++++. ..+.|+..|+ ++.+..-..|-+.+-
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~--------------------------sA~~aL~YFNRRGEL~qdeGklWIaaVfsra 107 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQ--------------------------SADRALRYFNRRGELHQDEGKLWIAAVFSRA 107 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHH--------------------------HHHHHHHHHHHH--TTSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHH--------------------------HHHHHHHHHhhccccccccchhHHHHHHHHH
Q ss_pred -HHHHcCChhHHHHHHHHHHH
Q 003937 386 -GYEQNGLNKDAVELFRSMVR 405 (785)
Q Consensus 386 -~~~~~g~~~~A~~~~~~m~~ 405 (785)
++-..|+.++|+.-|+..-+
T Consensus 108 ~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 108 VALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhcCChHHHHHHHHHHHH
No 464
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=23.39 E-value=8.2e+02 Score=25.10 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhh---cCCHHHHH
Q 003937 495 GEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGR---AGLLQEAY 570 (785)
Q Consensus 495 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~ 570 (785)
.+.-+.++++.++. .|+. .-...++..+.+....++..+-++.+... .+-+...|...++.... .-.+++..
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~--~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK--NPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 35566778887775 5554 35666777777777777777777777752 22245566666654432 12344444
Q ss_pred HHHHhC-------C--C------CCC--HHHHHHH---HHHHHhcCCHHHHHHHHHHHHhhC
Q 003937 571 NFIENM-------P--L------EPD--VVAWGSL---LSACRVHKNLDLGKIAAEKLLLIE 612 (785)
Q Consensus 571 ~~~~~~-------~--~------~p~--~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~ 612 (785)
++|.+. . . .|+ ......+ ..-+++.|..+.|..+++-+++++
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 444332 1 0 011 1122222 223478899999999999998853
No 465
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.37 E-value=3.3e+02 Score=24.85 Aligned_cols=41 Identities=10% Similarity=-0.053 Sum_probs=17.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHH
Q 003937 115 TIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASC 155 (785)
Q Consensus 115 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 155 (785)
.++..+...+.+-.|.++++.+.+.+..++..|.-..|..+
T Consensus 30 ~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L 70 (169)
T PRK11639 30 EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFL 70 (169)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHH
Confidence 33333333344444444444444444444443333333333
No 466
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=23.34 E-value=2.9e+02 Score=30.85 Aligned_cols=48 Identities=15% Similarity=0.139 Sum_probs=29.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc--CCCCCHhhHHHHHHHHhccCchH
Q 003937 382 AMLVGYEQNGLNKDAVELFRSMVRE--GPKPNNYTLSAMLSVSSSLASLD 429 (785)
Q Consensus 382 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~ 429 (785)
++..+|..+|++..+..+++..... |-+.=...|+..|+...+.|.++
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~ 82 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFE 82 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCcc
Confidence 6777788888887777777776543 22222334555566666666543
No 467
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=23.30 E-value=2.6e+02 Score=25.48 Aligned_cols=60 Identities=10% Similarity=0.156 Sum_probs=27.5
Q ss_pred HHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHH
Q 003937 506 LELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQ 567 (785)
Q Consensus 506 ~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 567 (785)
...|++++..-. .++......+..-.|.++++.+.+ .+...+..|.---++.+.+.|-+.
T Consensus 18 ~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~-~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 18 AQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLRE-AEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHh-hCCCCCcchHHHHHHHHHHCCCEE
Confidence 344555544322 222223233444456666666654 333334333333345666666554
No 468
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=23.13 E-value=5.4e+02 Score=23.85 Aligned_cols=31 Identities=13% Similarity=0.227 Sum_probs=18.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccCCChhHHH
Q 003937 453 LITMYSKAGNINAARRVFNLIHWRQETVSWT 483 (785)
Q Consensus 453 li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~ 483 (785)
.+-.|.+.|.+++|.+++++.-..|+.....
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r 147 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFSDPESQKLR 147 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhcCCCchhHH
Confidence 3445667777777777777665554444433
No 469
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=22.79 E-value=2e+02 Score=22.70 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=14.0
Q ss_pred ChhHHHHHHhhCCCCCccHHHHHHHHHHh
Q 003937 94 RLDLACEVFNLMPNRDSVSWTTIIVTYNE 122 (785)
Q Consensus 94 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~ 122 (785)
+.+.|..+++-++.+...+|.....++-.
T Consensus 43 ~~~qa~~Lld~L~trG~~Af~~F~~aL~~ 71 (86)
T cd08323 43 QKEKAVMLINMILTKDNHAYVSFYNALLH 71 (86)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34445555555555544445554444443
No 470
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=22.71 E-value=5e+02 Score=22.35 Aligned_cols=110 Identities=10% Similarity=0.146 Sum_probs=67.7
Q ss_pred hhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHH---HHHHHHhccC-------ChhHH
Q 003937 95 LDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVT---SVLASCTALG-------DLSAG 164 (785)
Q Consensus 95 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~g-------~~~~a 164 (785)
+.-|..++-+....+ .....++.+.+..-.-.++++..++....-.|..+.-. .-++.|-... .....
T Consensus 5 p~IA~~~l~~l~~s~--~~~~yld~lv~~~~sl~s~EvVn~L~~~~~~p~efl~~yI~~cI~~ce~~kd~~~q~R~VRlv 82 (126)
T PF10155_consen 5 PNIAIEILVKLINSP--NFKEYLDVLVSMDMSLHSMEVVNRLTTSFSLPQEFLHMYISNCIKSCESIKDKYMQNRLVRLV 82 (126)
T ss_pred HHHHHHHHHHHcCCc--hHHHHHHHHHcCCCchhHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHhhcccccccchhhhH
Confidence 444555555444322 26666777777777777778887777666555554322 2244443222 23344
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcC
Q 003937 165 KKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGM 206 (785)
Q Consensus 165 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 206 (785)
-.+.+.+++.++......+..+=..+.+..++.+|..+|+-+
T Consensus 83 cvfl~sLir~~i~~~~~l~~evq~FClefs~i~Ea~~L~kll 124 (126)
T PF10155_consen 83 CVFLQSLIRNKIIDVEDLFIEVQAFCLEFSRIKEASALFKLL 124 (126)
T ss_pred HHHHHHHHHcCCCchHHHHhhHHHHHHHHccHHHHHHHHHHH
Confidence 456677777777666667777777777778888888888754
No 471
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.50 E-value=3.4e+02 Score=23.98 Aligned_cols=32 Identities=22% Similarity=0.140 Sum_probs=13.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 003937 485 MIVALAQHGLGEEAIQLFERMLELGIKPDHIT 516 (785)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 516 (785)
++..+.+.++.-.|.++++++.+.+...+..|
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaT 57 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLAT 57 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhH
Confidence 33444444444444455555544443333333
No 472
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=22.42 E-value=1.8e+02 Score=29.22 Aligned_cols=75 Identities=12% Similarity=0.119 Sum_probs=43.8
Q ss_pred CCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 548 PTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGS-LLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 548 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
.|+..|...+.--.+.|.+.+...++.+. ...| |+..|-. --.-+..+++++.+..++.+.+.++|++|..|...
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 34444444444334444555555555554 3344 4445532 22225678888888888888888888888765543
No 473
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.42 E-value=1.4e+03 Score=27.34 Aligned_cols=26 Identities=12% Similarity=0.279 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhcCC
Q 003937 214 WNVVVSLHIHSGRLDLARAQFDQMIE 239 (785)
Q Consensus 214 ~~~li~~~~~~g~~~~A~~l~~~~~~ 239 (785)
|..|+-.|...|+.++|.+++.+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhc
Confidence 55566666666666666666655533
No 474
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=22.21 E-value=7.7e+02 Score=24.37 Aligned_cols=159 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred HhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCCHhhHHHHHHHHhccCchH-HH
Q 003937 357 IKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVRE----GPKPNNYTLSAMLSVSSSLASLD-HG 431 (785)
Q Consensus 357 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~ll~a~~~~~~~~-~a 431 (785)
.+++++++|.+++.. =...+.+.|+..-|-++-.-|++- +.++|......++..+.....-+ .-
T Consensus 1 v~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r 69 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPER 69 (260)
T ss_dssp HHTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTH
T ss_pred CccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchH
Q ss_pred HHHHHHHHHh-----CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003937 432 KQIHASALRS-----GEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERML 506 (785)
Q Consensus 432 ~~~~~~~~~~-----g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 506 (785)
..+...+++. .-.-++.....+...|.+.|++.+|+..|-.-... +...+..++.-....|...++
T Consensus 70 ~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~-~~~~~~~ll~~~~~~~~~~e~-------- 140 (260)
T PF04190_consen 70 KKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDP-SAFAYVMLLEEWSTKGYPSEA-------- 140 (260)
T ss_dssp HHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HH-HHHHHHHHHHHHHHHTSS--H--------
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCCh-hHHHHHHHHHHHHHhcCCcch--------
Q ss_pred HCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 507 ELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 507 ~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
..-..-.+--|...+++..|...++...+
T Consensus 141 -------dlfi~RaVL~yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 141 -------DLFIARAVLQYLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp -------HHHHHHHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHhcCHHHHHHHHHHHHH
No 475
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=21.79 E-value=2.3e+02 Score=23.40 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=10.5
Q ss_pred HHHHHHHcCChhHHHHHHHHH
Q 003937 383 MLVGYEQNGLNKDAVELFRSM 403 (785)
Q Consensus 383 li~~~~~~g~~~~A~~~~~~m 403 (785)
++..|...|+.++|...++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 444555555555555555544
No 476
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=20.97 E-value=8.9e+02 Score=24.64 Aligned_cols=103 Identities=13% Similarity=0.168 Sum_probs=55.4
Q ss_pred cCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-CChhHHH--HHHHHHHHcCChHHHHHH
Q 003937 425 LASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-QETVSWT--SMIVALAQHGLGEEAIQL 501 (785)
Q Consensus 425 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~~~~~~--~li~~~~~~g~~~~A~~~ 501 (785)
..-+.+|+.+++.+.+.+- .. |.+..+...--...+.+..+ .++.+|- .+..+-.+.|+..+|.+.
T Consensus 229 a~Ti~~AE~l~k~ALka~e----~~-------yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~ 297 (556)
T KOG3807|consen 229 ATTIVDAERLFKQALKAGE----TI-------YRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKI 297 (556)
T ss_pred hhhHHHHHHHHHHHHHHHH----HH-------HhhHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 3446667777777766531 11 22222222111222333333 2344442 344455578999999999
Q ss_pred HHHHHHCCCCCCHH---HHHHHHHHhhccCCHHHHHHHHHHh
Q 003937 502 FERMLELGIKPDHI---TYVGVLTACTHGGLVEQGQRYYNMM 540 (785)
Q Consensus 502 ~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a~~~~~~m 540 (785)
|+.+.+. .|=.. .-..++.+|.....+.+...++.+.
T Consensus 298 ~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 298 MRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9888763 34222 3345777777777676666666544
No 477
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=20.79 E-value=4.6e+02 Score=23.15 Aligned_cols=61 Identities=10% Similarity=0.031 Sum_probs=29.3
Q ss_pred HHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 003937 134 VEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGD 195 (785)
Q Consensus 134 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 195 (785)
..+.+.|++++..- ..++..+...++.-.|..+|+.+.+.+...+..+--.-++.+...|-
T Consensus 10 ~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 10 ERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 33444554443321 23444444444445666666666665544433333333455555554
No 478
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=20.51 E-value=1.7e+02 Score=28.00 Aligned_cols=55 Identities=11% Similarity=0.143 Sum_probs=49.7
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 647 (785)
.+.++.+-+-+++.+++++-|+....|..+...--++|+.+.|.+.+++..+...
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 4678889999999999999999999999999999999999999999999876543
No 479
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=20.46 E-value=7.9e+02 Score=23.83 Aligned_cols=113 Identities=12% Similarity=0.193 Sum_probs=66.9
Q ss_pred hcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHH
Q 003937 289 ANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRI 368 (785)
Q Consensus 289 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 368 (785)
.+..+.+.-.++.+.....++.-+..-..+++ +...|+..+|+.-++.-.... .+-.+..+
T Consensus 170 sklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~-----------------g~Vn~enV 230 (333)
T KOG0991|consen 170 SKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGF-----------------GLVNQENV 230 (333)
T ss_pred cccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccc-----------------cccchhhh
Confidence 33444333344444444444444443333333 455677777766655433322 34455677
Q ss_pred HHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 003937 369 FDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVS 422 (785)
Q Consensus 369 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 422 (785)
|+-..+|.+.....|+..+ ..++.++|.+++.++-+.|..|.... +++..++
T Consensus 231 fKv~d~PhP~~v~~ml~~~-~~~~~~~A~~il~~lw~lgysp~Dii-~~~FRv~ 282 (333)
T KOG0991|consen 231 FKVCDEPHPLLVKKMLQAC-LKRNIDEALKILAELWKLGYSPEDII-TTLFRVV 282 (333)
T ss_pred hhccCCCChHHHHHHHHHH-HhccHHHHHHHHHHHHHcCCCHHHHH-HHHHHHH
Confidence 7777778887777777654 45678999999999988888886542 3344443
No 480
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=20.38 E-value=5e+02 Score=28.63 Aligned_cols=22 Identities=23% Similarity=0.644 Sum_probs=18.2
Q ss_pred CCchhHHHHHHHHHhcCChHHH
Q 003937 614 DNSGAYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 614 ~~~~~~~~l~~~~~~~g~~~~a 635 (785)
+|+..|..|+..|-...+|||+
T Consensus 405 ~Dpecfa~lLrFYDgIC~WEEG 426 (618)
T PF05053_consen 405 RDPECFANLLRFYDGICKWEEG 426 (618)
T ss_dssp G-HHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHhhceecccC
Confidence 4788899999999999999885
No 481
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.03 E-value=1.7e+03 Score=27.43 Aligned_cols=177 Identities=11% Similarity=0.052 Sum_probs=92.3
Q ss_pred HhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCC-----cchHHHHHHHHHhc
Q 003937 252 YSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDAT-----GPVGNALISCYAKV 326 (785)
Q Consensus 252 ~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~y~~~ 326 (785)
|...|...+|+..|.+. . .|+.-+..-...+....-...++ ..|-.|. ..-|-..+..+-+.
T Consensus 930 yl~tge~~kAl~cF~~a-~-Sg~ge~~aL~~lv~~~~p~~~sv-----------~dG~t~s~e~t~lhYYlkv~rlle~h 996 (1480)
T KOG4521|consen 930 YLGTGEPVKALNCFQSA-L-SGFGEGNALRKLVYFLLPKRFSV-----------ADGKTPSEELTALHYYLKVVRLLEEH 996 (1480)
T ss_pred eecCCchHHHHHHHHHH-h-hccccHHHHHHHHHHhcCCCCch-----------hcCCCCCchHHHHHHHHHHHHHHHHh
Confidence 66778888999999887 2 33333322222222111111111 1121111 12345566777777
Q ss_pred CChHHHHHH----HHHhCCCCCc-hHhHHHHHHHHHhcCCHHHHHHHHHhcCCC--CHhHHHHHHHHHHHcCChh-----
Q 003937 327 GGVEIAQKI----VEQSGISYLN-VIAFTTLLDGYIKIGDIGPARRIFDSLRDR--DVVAWTAMLVGYEQNGLNK----- 394 (785)
Q Consensus 327 g~~~~A~~~----~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~----- 394 (785)
+-.|.+.++ ++++....|. ..+++++.+-....|.+-+|....-+.++. -.....-++..++++|..+
T Consensus 997 n~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLfecg~l~~L~~f 1076 (1480)
T KOG4521|consen 997 NHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLFECGELEALATF 1076 (1480)
T ss_pred ccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhccchHHHhhC
Confidence 777776665 4455555554 356778888888889998888888766652 2234555666666666543
Q ss_pred -------HHHH-HHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHH-HHHHHHHh
Q 003937 395 -------DAVE-LFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQ-IHASALRS 441 (785)
Q Consensus 395 -------~A~~-~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~-~~~~~~~~ 441 (785)
+... +++..-+....-...-|..+-..+...+++.+|-. +++...+.
T Consensus 1077 pfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl 1132 (1480)
T KOG4521|consen 1077 PFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRL 1132 (1480)
T ss_pred CccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHh
Confidence 3333 22222222211122234444444556666666544 34444443
Done!