Query 003937
Match_columns 785
No_of_seqs 873 out of 4955
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 08:51:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 9.9E-41 3.4E-45 379.4 37.3 500 89-645 63-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 3.7E-40 1.3E-44 374.7 26.2 516 56-628 61-596 (597)
3 4g26_A Pentatricopeptide repea 100.0 3E-27 1E-31 256.7 22.1 186 377-563 26-223 (501)
4 4g26_A Pentatricopeptide repea 99.9 1.4E-26 4.9E-31 251.4 21.7 201 394-595 7-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 8.1E-24 2.8E-28 226.0 40.5 370 251-631 8-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 4E-23 1.4E-27 220.5 38.9 352 286-645 7-368 (388)
7 2gw1_A Mitochondrial precursor 99.9 1.3E-20 4.3E-25 209.3 34.6 423 213-645 8-478 (514)
8 2gw1_A Mitochondrial precursor 99.9 1.5E-20 5.3E-25 208.6 35.1 443 112-622 8-489 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 1.6E-20 5.4E-25 204.8 32.8 322 312-641 25-405 (450)
10 3fp2_A TPR repeat-containing p 99.9 1.4E-19 4.8E-24 202.1 34.1 289 317-644 164-490 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 4.9E-19 1.7E-23 192.9 34.0 367 241-635 25-444 (450)
12 3fp2_A TPR repeat-containing p 99.9 1E-18 3.5E-23 195.1 35.8 431 110-620 25-500 (537)
13 1xi4_A Clathrin heavy chain; a 99.8 2.2E-15 7.5E-20 172.5 52.8 280 325-637 1088-1376(1630)
14 1xi4_A Clathrin heavy chain; a 99.8 7.8E-15 2.7E-19 168.0 56.9 513 77-640 723-1340(1630)
15 3ieg_A DNAJ homolog subfamily 99.8 4.5E-17 1.5E-21 171.1 30.3 304 315-626 5-350 (359)
16 1b89_A Protein (clathrin heavy 99.8 8.1E-18 2.8E-22 173.5 22.9 400 91-535 15-425 (449)
17 3ieg_A DNAJ homolog subfamily 99.8 3.9E-16 1.3E-20 163.9 35.8 295 345-645 2-335 (359)
18 3hym_B Cell division cycle pro 99.7 5.9E-16 2E-20 160.5 29.4 286 310-633 19-322 (330)
19 1b89_A Protein (clathrin heavy 99.7 1.9E-16 6.7E-21 163.3 24.2 342 225-639 17-366 (449)
20 3mkr_A Coatomer subunit epsilo 99.7 2.2E-15 7.6E-20 152.5 28.6 271 323-638 9-287 (291)
21 1fch_A Peroxisomal targeting s 99.7 6.8E-16 2.3E-20 162.9 25.2 258 378-641 65-355 (368)
22 2ooe_A Cleavage stimulation fa 99.7 3.5E-14 1.2E-18 157.8 39.9 209 430-644 256-491 (530)
23 3hym_B Cell division cycle pro 99.7 6E-15 2E-19 152.9 29.8 263 376-644 21-298 (330)
24 2xm6_A Protein corresponding t 99.7 7.3E-14 2.5E-18 153.5 39.2 321 291-628 92-452 (490)
25 2ooe_A Cleavage stimulation fa 99.7 1.4E-13 4.9E-18 152.8 39.7 398 209-615 11-496 (530)
26 1fch_A Peroxisomal targeting s 99.7 3.4E-15 1.2E-19 157.6 24.1 272 314-610 65-358 (368)
27 2xm6_A Protein corresponding t 99.7 3E-13 1E-17 148.6 40.6 338 291-647 56-434 (490)
28 3spa_A Mtrpol, DNA-directed RN 99.7 6.2E-17 2.1E-21 179.7 8.9 133 443-576 123-262 (1134)
29 4eqf_A PEX5-related protein; a 99.7 2.1E-15 7.2E-20 159.1 20.1 258 378-641 66-352 (365)
30 4eqf_A PEX5-related protein; a 99.7 4.1E-15 1.4E-19 156.8 20.9 232 411-645 64-310 (365)
31 3spa_A Mtrpol, DNA-directed RN 99.6 1E-16 3.6E-21 177.9 7.8 150 377-564 127-286 (1134)
32 3mkr_A Coatomer subunit epsilo 99.6 1.5E-14 5E-19 146.4 21.8 193 444-645 62-264 (291)
33 3cv0_A Peroxisome targeting si 99.6 2.7E-14 9.4E-19 147.7 23.6 257 347-642 22-312 (327)
34 4g1t_A Interferon-induced prot 99.6 2.6E-13 8.8E-18 148.5 31.8 363 242-655 51-469 (472)
35 3cv0_A Peroxisome targeting si 99.6 1.6E-13 5.4E-18 141.9 25.7 223 314-541 22-267 (327)
36 4g1t_A Interferon-induced prot 99.6 1.3E-12 4.5E-17 142.8 28.9 381 211-622 51-470 (472)
37 2pl2_A Hypothetical conserved 99.5 3.3E-13 1.1E-17 130.2 19.3 195 444-643 2-212 (217)
38 3uq3_A Heat shock protein STI1 99.5 8.4E-13 2.9E-17 131.1 22.0 220 378-645 6-236 (258)
39 3uq3_A Heat shock protein STI1 99.5 1.4E-12 4.8E-17 129.5 21.5 237 346-624 5-255 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.5E-12 8.6E-17 129.2 21.9 241 390-639 18-269 (275)
41 3e4b_A ALGK; tetratricopeptide 99.4 1.8E-11 6E-16 132.3 26.6 237 361-643 160-419 (452)
42 3u4t_A TPR repeat-containing p 99.4 3.5E-12 1.2E-16 128.0 19.7 246 347-630 4-269 (272)
43 4e6h_A MRNA 3'-END-processing 99.4 3.8E-10 1.3E-14 125.9 36.5 217 395-616 327-575 (679)
44 1ouv_A Conserved hypothetical 99.4 8.1E-11 2.8E-15 118.1 27.1 223 377-613 6-253 (273)
45 1ouv_A Conserved hypothetical 99.4 9E-11 3.1E-15 117.7 27.4 225 411-647 5-253 (273)
46 2ho1_A Type 4 fimbrial biogene 99.4 2.4E-11 8.1E-16 120.3 22.8 196 447-645 37-238 (252)
47 3e4b_A ALGK; tetratricopeptide 99.4 1.8E-11 6E-16 132.4 23.5 214 348-575 178-417 (452)
48 2vq2_A PILW, putative fimbrial 99.4 3.5E-11 1.2E-15 116.5 23.3 197 446-645 7-211 (225)
49 2ho1_A Type 4 fimbrial biogene 99.4 9.6E-11 3.3E-15 115.8 25.3 205 377-619 37-246 (252)
50 2q7f_A YRRB protein; TPR, prot 99.4 1.1E-11 3.7E-16 121.8 17.8 196 446-645 22-222 (243)
51 3vtx_A MAMA; tetratricopeptide 99.4 2.7E-11 9.3E-16 113.3 18.6 164 478-645 4-170 (184)
52 2vq2_A PILW, putative fimbrial 99.4 1.8E-10 6.3E-15 111.3 24.4 209 376-622 7-222 (225)
53 2h6f_A Protein farnesyltransfe 99.4 5.7E-11 2E-15 124.2 22.1 243 378-628 98-365 (382)
54 2q7f_A YRRB protein; TPR, prot 99.3 2.6E-11 8.9E-16 119.1 17.8 214 376-628 22-239 (243)
55 3sf4_A G-protein-signaling mod 99.3 5.2E-11 1.8E-15 127.0 21.2 197 448-644 88-335 (406)
56 4a1s_A PINS, partner of inscut 99.3 1.6E-11 5.6E-16 131.4 17.1 198 447-644 126-371 (411)
57 3ro2_A PINS homolog, G-protein 99.3 5.1E-11 1.7E-15 123.2 20.3 199 447-645 83-332 (338)
58 3u4t_A TPR repeat-containing p 99.3 9.9E-11 3.4E-15 117.2 21.7 239 313-589 3-262 (272)
59 2pl2_A Hypothetical conserved 99.3 5.8E-11 2E-15 114.3 18.9 204 311-541 3-212 (217)
60 1xnf_A Lipoprotein NLPI; TPR, 99.3 5E-11 1.7E-15 119.6 18.6 244 122-399 17-268 (275)
61 4abn_A Tetratricopeptide repea 99.3 3.1E-11 1.1E-15 131.3 16.9 194 445-642 100-318 (474)
62 2h6f_A Protein farnesyltransfe 99.3 6.5E-11 2.2E-15 123.8 18.6 224 414-644 99-347 (382)
63 3sf4_A G-protein-signaling mod 99.3 3.7E-11 1.3E-15 128.1 17.0 291 313-634 9-365 (406)
64 4e6h_A MRNA 3'-END-processing 99.3 4.2E-08 1.4E-12 109.6 39.1 443 29-507 48-569 (679)
65 4gyw_A UDP-N-acetylglucosamine 99.2 8.9E-11 3E-15 132.8 17.4 162 478-644 8-173 (723)
66 4a1s_A PINS, partner of inscut 99.2 1.1E-10 3.7E-15 125.0 17.0 267 316-613 51-374 (411)
67 3vtx_A MAMA; tetratricopeptide 99.2 2.1E-10 7.1E-15 107.3 16.5 167 446-616 4-175 (184)
68 3ro2_A PINS homolog, G-protein 99.2 1.8E-10 6.2E-15 119.0 17.0 263 320-613 12-334 (338)
69 2ond_A Cleavage stimulation fa 99.2 4.6E-09 1.6E-13 107.2 27.0 184 429-616 81-275 (308)
70 3nf1_A KLC 1, kinesin light ch 99.2 4.9E-11 1.7E-15 122.0 10.4 237 376-644 26-306 (311)
71 3ulq_A Response regulator aspa 99.2 9.3E-10 3.2E-14 116.4 19.8 158 384-541 110-291 (383)
72 3ulq_A Response regulator aspa 99.2 8.2E-10 2.8E-14 116.8 19.2 226 418-644 109-367 (383)
73 3nf1_A KLC 1, kinesin light ch 99.2 9.1E-11 3.1E-15 120.0 11.3 241 345-614 26-310 (311)
74 2ond_A Cleavage stimulation fa 99.2 2.8E-09 9.5E-14 108.8 22.4 212 430-646 34-271 (308)
75 3as5_A MAMA; tetratricopeptide 99.2 1.1E-09 3.7E-14 102.0 17.2 160 482-645 11-173 (186)
76 1hz4_A MALT regulatory protein 99.1 2.3E-08 7.9E-13 105.1 28.5 259 386-644 23-321 (373)
77 4i17_A Hypothetical protein; T 99.1 4.3E-09 1.5E-13 102.1 20.3 204 411-626 6-224 (228)
78 4abn_A Tetratricopeptide repea 99.1 1.1E-09 3.6E-14 119.2 15.7 178 463-645 84-287 (474)
79 3q15_A PSP28, response regulat 99.1 2.3E-08 7.8E-13 105.4 25.4 159 383-541 107-288 (378)
80 3as5_A MAMA; tetratricopeptide 99.1 5.3E-09 1.8E-13 97.3 17.5 167 448-618 9-180 (186)
81 4i17_A Hypothetical protein; T 99.0 4.7E-09 1.6E-13 101.8 16.2 189 445-645 5-209 (228)
82 3q15_A PSP28, response regulat 99.0 1.4E-08 4.7E-13 107.1 19.3 224 420-644 109-364 (378)
83 3edt_B KLC 2, kinesin light ch 98.9 9.7E-09 3.3E-13 102.9 15.2 222 423-644 12-280 (283)
84 1hz4_A MALT regulatory protein 98.9 2.2E-07 7.4E-12 97.7 26.2 193 420-613 101-324 (373)
85 4gyw_A UDP-N-acetylglucosamine 98.9 8.3E-09 2.8E-13 116.7 15.3 163 446-613 8-176 (723)
86 1qqe_A Vesicular transport pro 98.9 6.3E-08 2.2E-12 97.8 19.4 164 449-614 79-272 (292)
87 3mv2_B Coatomer subunit epsilo 98.9 2E-07 6.9E-12 92.2 20.7 175 466-645 85-282 (310)
88 1qqe_A Vesicular transport pro 98.9 2.8E-08 9.7E-13 100.3 15.0 228 395-642 3-266 (292)
89 4ga2_A E3 SUMO-protein ligase 98.8 4.9E-09 1.7E-13 93.9 7.3 138 489-631 7-149 (150)
90 2fo7_A Synthetic consensus TPR 98.8 7.4E-08 2.5E-12 83.9 14.5 129 481-644 3-131 (136)
91 3edt_B KLC 2, kinesin light ch 98.8 1.1E-07 3.7E-12 95.2 17.6 217 361-611 23-281 (283)
92 3rjv_A Putative SEL1 repeat pr 98.8 3.6E-07 1.2E-11 87.2 20.2 174 465-647 4-199 (212)
93 3qky_A Outer membrane assembly 98.8 1.1E-07 3.7E-12 94.3 17.2 184 446-634 14-250 (261)
94 3qky_A Outer membrane assembly 98.8 2.7E-07 9.1E-12 91.4 19.8 189 478-691 14-247 (261)
95 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.6E-07 8.8E-12 89.2 18.8 182 447-648 4-216 (225)
96 2fo7_A Synthetic consensus TPR 98.8 1.6E-07 5.4E-12 81.8 15.3 124 449-575 3-128 (136)
97 3qou_A Protein YBBN; thioredox 98.8 1.3E-07 4.5E-12 95.1 16.0 161 478-643 116-282 (287)
98 2pzi_A Probable serine/threoni 98.7 2.6E-08 8.9E-13 113.3 10.6 147 479-631 433-583 (681)
99 3mv2_B Coatomer subunit epsilo 98.7 1.2E-06 4E-11 86.7 21.0 180 431-618 85-289 (310)
100 2uy1_A Cleavage stimulation fa 98.7 3.6E-05 1.2E-09 83.3 32.6 125 480-610 287-412 (493)
101 4ga2_A E3 SUMO-protein ligase 98.7 4.6E-08 1.6E-12 87.5 8.1 122 520-644 3-128 (150)
102 2vsy_A XCC0866; transferase, g 98.6 1.8E-07 6E-12 104.5 14.4 160 460-623 2-169 (568)
103 3gyz_A Chaperone protein IPGC; 98.6 1.5E-07 5E-12 83.9 11.0 101 545-645 30-133 (151)
104 2r5s_A Uncharacterized protein 98.6 1.4E-07 4.6E-12 87.1 11.2 156 484-644 11-172 (176)
105 3urz_A Uncharacterized protein 98.6 5.1E-07 1.7E-11 85.8 15.0 154 455-614 12-189 (208)
106 2pzi_A Probable serine/threoni 98.6 1.1E-06 3.7E-11 99.9 18.6 189 423-617 402-608 (681)
107 4gco_A Protein STI-1; structur 98.6 3.7E-07 1.3E-11 78.6 10.8 108 516-625 15-124 (126)
108 2ifu_A Gamma-SNAP; membrane fu 98.6 2.1E-06 7.3E-11 87.1 18.2 221 390-638 4-254 (307)
109 2vsy_A XCC0866; transferase, g 98.5 6.9E-07 2.4E-11 99.7 15.4 147 425-576 2-154 (568)
110 3urz_A Uncharacterized protein 98.5 5.3E-07 1.8E-11 85.7 12.4 160 481-645 6-186 (208)
111 2vgx_A Chaperone SYCD; alterna 98.5 2.7E-07 9.3E-12 82.2 9.6 96 550-645 21-118 (148)
112 4gco_A Protein STI-1; structur 98.5 3.7E-07 1.3E-11 78.6 10.1 100 546-645 8-110 (126)
113 2qfc_A PLCR protein; TPR, HTH, 98.5 3.5E-06 1.2E-10 84.9 18.7 164 480-643 76-264 (293)
114 2yhc_A BAMD, UPF0169 lipoprote 98.5 2.3E-06 7.9E-11 82.4 16.5 183 414-617 6-219 (225)
115 2uy1_A Cleavage stimulation fa 98.5 2E-05 7E-10 85.2 25.7 169 464-642 196-380 (493)
116 3u3w_A Transcriptional activat 98.5 1.5E-05 5E-10 80.3 22.0 159 485-643 81-264 (293)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2.7E-06 9.1E-11 81.0 15.5 125 517-646 9-151 (213)
118 3rjv_A Putative SEL1 repeat pr 98.5 9.7E-06 3.3E-10 77.1 18.9 173 431-613 5-199 (212)
119 2c2l_A CHIP, carboxy terminus 98.4 7E-07 2.4E-11 89.4 10.7 191 446-644 3-198 (281)
120 2r5s_A Uncharacterized protein 98.4 1.5E-06 5.2E-11 79.9 12.0 155 451-610 10-172 (176)
121 2xcb_A PCRH, regulatory protei 98.4 2.3E-06 8E-11 75.4 12.3 96 550-645 18-115 (142)
122 3dra_A Protein farnesyltransfe 98.4 3.8E-05 1.3E-09 76.7 21.8 179 462-644 84-286 (306)
123 1na0_A Designed protein CTPR3; 98.4 3.7E-06 1.3E-10 71.7 12.6 113 516-630 11-125 (125)
124 1a17_A Serine/threonine protei 98.4 4.6E-06 1.6E-10 75.5 13.7 124 518-643 17-144 (166)
125 3qou_A Protein YBBN; thioredox 98.4 8.1E-06 2.8E-10 81.8 16.6 123 449-573 153-278 (287)
126 1hh8_A P67PHOX, NCF-2, neutrop 98.4 8.4E-06 2.9E-10 77.5 16.0 144 450-615 9-154 (213)
127 2ifu_A Gamma-SNAP; membrane fu 98.4 1.8E-06 6.1E-11 87.7 11.6 196 425-643 4-222 (307)
128 1p5q_A FKBP52, FK506-binding p 98.3 2.6E-06 8.8E-11 87.7 12.3 144 478-643 146-292 (336)
129 2lni_A Stress-induced-phosphop 98.3 5.4E-06 1.9E-10 71.7 12.5 113 517-631 19-133 (133)
130 2vyi_A SGTA protein; chaperone 98.3 5.3E-06 1.8E-10 71.4 12.3 115 516-632 14-130 (131)
131 3u3w_A Transcriptional activat 98.3 7.7E-05 2.6E-09 74.9 22.7 159 453-611 81-266 (293)
132 3upv_A Heat shock protein STI1 98.3 3.5E-06 1.2E-10 72.5 10.0 95 551-645 5-101 (126)
133 1wao_1 Serine/threonine protei 98.3 5.5E-06 1.9E-10 89.6 13.5 117 523-641 15-135 (477)
134 3dra_A Protein farnesyltransfe 98.3 0.00036 1.2E-08 69.6 25.4 224 394-624 50-301 (306)
135 3gyz_A Chaperone protein IPGC; 98.3 2.6E-06 8.9E-11 75.7 8.7 103 510-615 31-137 (151)
136 4f3v_A ESX-1 secretion system 98.2 5.4E-06 1.8E-10 80.9 11.5 182 459-645 18-237 (282)
137 1hxi_A PEX5, peroxisome target 98.2 2.9E-06 9.8E-11 72.4 8.5 94 552-645 19-114 (121)
138 2vgx_A Chaperone SYCD; alterna 98.2 3.1E-06 1E-10 75.2 8.9 107 510-618 16-125 (148)
139 2kck_A TPR repeat; tetratricop 98.2 8.1E-06 2.8E-10 68.0 11.1 98 550-647 6-108 (112)
140 2e2e_A Formate-dependent nitri 98.2 3.8E-06 1.3E-10 77.3 9.6 120 525-646 21-145 (177)
141 2qfc_A PLCR protein; TPR, HTH, 98.2 3.5E-05 1.2E-09 77.4 17.1 163 449-611 77-266 (293)
142 3sz7_A HSC70 cochaperone (SGT) 98.2 6.3E-06 2.2E-10 74.7 10.0 94 551-644 12-107 (164)
143 3q49_B STIP1 homology and U bo 98.2 1.7E-05 5.8E-10 69.1 12.0 98 548-645 7-106 (137)
144 4gcn_A Protein STI-1; structur 98.2 6.8E-06 2.3E-10 70.7 9.1 93 552-644 10-111 (127)
145 1na0_A Designed protein CTPR3; 98.1 2E-05 6.7E-10 67.0 11.7 96 550-645 9-106 (125)
146 3gw4_A Uncharacterized protein 98.1 3.1E-05 1.1E-09 72.7 14.2 61 584-644 109-175 (203)
147 4f3v_A ESX-1 secretion system 98.1 5.9E-05 2E-09 73.6 16.1 127 316-442 105-238 (282)
148 2lni_A Stress-induced-phosphop 98.1 1.6E-05 5.5E-10 68.6 10.9 98 548-645 14-113 (133)
149 1elw_A TPR1-domain of HOP; HOP 98.1 2.3E-05 7.8E-10 65.8 11.4 95 551-645 5-101 (118)
150 2xcb_A PCRH, regulatory protei 98.1 1.1E-05 3.6E-10 71.1 9.5 105 516-622 20-126 (142)
151 2e2e_A Formate-dependent nitri 98.1 1.2E-05 4E-10 73.9 10.2 126 490-619 21-152 (177)
152 3gw4_A Uncharacterized protein 98.1 2.3E-05 7.8E-10 73.6 12.5 153 459-611 4-176 (203)
153 2dba_A Smooth muscle cell asso 98.1 2.9E-05 1E-09 68.5 12.4 95 550-644 28-127 (148)
154 2fbn_A 70 kDa peptidylprolyl i 98.1 2.4E-05 8.2E-10 73.4 12.1 169 456-645 13-186 (198)
155 1elw_A TPR1-domain of HOP; HOP 98.1 4.8E-05 1.6E-09 63.8 12.6 107 517-625 7-115 (118)
156 1wao_1 Serine/threonine protei 98.0 1.7E-05 5.9E-10 85.7 11.3 114 456-574 15-134 (477)
157 3upv_A Heat shock protein STI1 98.0 2.9E-05 9.7E-10 66.6 10.6 107 517-625 7-121 (126)
158 3sz7_A HSC70 cochaperone (SGT) 98.0 3.1E-05 1.1E-09 70.0 11.1 106 516-623 13-120 (164)
159 1a17_A Serine/threonine protei 98.0 6.6E-05 2.3E-09 67.7 13.3 127 480-610 14-145 (166)
160 2dba_A Smooth muscle cell asso 98.0 9E-05 3.1E-09 65.2 13.8 77 551-627 66-144 (148)
161 2hr2_A Hypothetical protein; a 98.0 2.3E-05 7.9E-10 68.8 9.3 62 583-644 58-130 (159)
162 2vyi_A SGTA protein; chaperone 98.0 3.2E-05 1.1E-09 66.3 10.3 97 549-645 11-109 (131)
163 3rkv_A Putative peptidylprolyl 98.0 5.6E-05 1.9E-09 68.1 12.0 64 582-645 63-126 (162)
164 2xev_A YBGF; tetratricopeptide 97.9 3.7E-05 1.3E-09 66.0 9.8 91 555-645 7-105 (129)
165 1p5q_A FKBP52, FK506-binding p 97.9 5.3E-05 1.8E-09 77.7 11.7 119 446-569 146-283 (336)
166 3k9i_A BH0479 protein; putativ 97.9 1.1E-05 3.8E-10 68.2 5.4 83 563-645 3-90 (117)
167 3q49_B STIP1 homology and U bo 97.9 5.4E-05 1.8E-09 65.8 9.9 98 515-614 10-109 (137)
168 2kck_A TPR repeat; tetratricop 97.9 5.6E-05 1.9E-09 62.7 9.6 99 516-616 8-111 (112)
169 3q7a_A Farnesyltransferase alp 97.9 0.0012 4.1E-08 66.6 20.2 179 462-644 104-330 (349)
170 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 8.4E-05 2.9E-09 79.9 12.5 144 478-643 267-413 (457)
171 1elr_A TPR2A-domain of HOP; HO 97.8 5.9E-05 2E-09 64.7 9.3 95 551-645 5-108 (131)
172 2c2l_A CHIP, carboxy terminus 97.8 7E-05 2.4E-09 74.7 11.1 106 513-620 3-110 (281)
173 4gcn_A Protein STI-1; structur 97.8 5.8E-05 2E-09 64.8 9.1 107 480-617 9-117 (127)
174 2fbn_A 70 kDa peptidylprolyl i 97.8 3.7E-05 1.3E-09 72.1 8.4 94 552-645 40-151 (198)
175 3dss_A Geranylgeranyl transfer 97.8 0.0035 1.2E-07 62.9 22.7 117 388-507 40-173 (331)
176 4b4t_Q 26S proteasome regulato 97.8 0.00024 8.4E-09 75.8 15.5 189 455-643 12-243 (434)
177 1elr_A TPR2A-domain of HOP; HO 97.8 6E-05 2.1E-09 64.6 8.5 114 480-626 5-122 (131)
178 3ro3_A PINS homolog, G-protein 97.8 0.00014 4.8E-09 64.9 10.8 135 481-644 11-157 (164)
179 3q7a_A Farnesyltransferase alp 97.7 0.0097 3.3E-07 60.0 24.8 226 391-623 68-344 (349)
180 1hxi_A PEX5, peroxisome target 97.7 8.2E-05 2.8E-09 63.1 8.3 94 520-615 23-118 (121)
181 2xev_A YBGF; tetratricopeptide 97.7 0.00031 1.1E-08 60.0 12.0 98 522-622 10-116 (129)
182 2hr2_A Hypothetical protein; a 97.7 6.7E-05 2.3E-09 65.9 7.4 109 480-619 12-139 (159)
183 1ihg_A Cyclophilin 40; ppiase 97.7 0.00013 4.5E-09 75.7 11.1 137 479-637 223-362 (370)
184 1dce_A Protein (RAB geranylger 97.7 0.0012 4.1E-08 72.6 19.2 171 460-634 42-244 (567)
185 3dss_A Geranylgeranyl transfer 97.7 0.0053 1.8E-07 61.6 22.0 210 430-644 48-303 (331)
186 2if4_A ATFKBP42; FKBP-like, al 97.7 8.3E-05 2.9E-09 76.3 9.1 146 480-645 180-328 (338)
187 3k9i_A BH0479 protein; putativ 97.7 3.7E-05 1.3E-09 64.8 5.2 91 527-618 3-97 (117)
188 2if4_A ATFKBP42; FKBP-like, al 97.7 6.5E-05 2.2E-09 77.1 7.9 113 516-645 181-293 (338)
189 3ro3_A PINS homolog, G-protein 97.7 0.00019 6.5E-09 64.0 10.0 136 447-611 9-158 (164)
190 3n71_A Histone lysine methyltr 97.6 0.00033 1.1E-08 75.0 13.0 121 525-645 320-464 (490)
191 3rkv_A Putative peptidylprolyl 97.6 0.00011 3.7E-09 66.2 8.0 120 479-623 11-139 (162)
192 3ma5_A Tetratricopeptide repea 97.6 0.00031 1.1E-08 57.1 9.2 65 581-645 6-70 (100)
193 4b4t_Q 26S proteasome regulato 97.5 0.0006 2.1E-08 72.7 13.6 158 487-644 12-203 (434)
194 2kat_A Uncharacterized protein 97.5 0.00033 1.1E-08 58.6 9.0 77 568-644 3-81 (115)
195 1zu2_A Mitochondrial import re 97.5 6.7E-05 2.3E-09 65.7 4.3 85 561-645 13-120 (158)
196 2l6j_A TPR repeat-containing p 97.5 0.00017 5.9E-09 59.7 6.8 91 549-639 3-101 (111)
197 1ihg_A Cyclophilin 40; ppiase 97.5 0.00054 1.8E-08 71.1 11.8 111 516-645 225-336 (370)
198 1kt0_A FKBP51, 51 kDa FK506-bi 97.5 0.00051 1.7E-08 73.7 11.6 64 582-645 317-380 (457)
199 1na3_A Designed protein CTPR2; 97.5 0.0006 2.1E-08 53.8 9.2 81 550-630 9-91 (91)
200 3lvg_A Clathrin heavy chain 1; 97.4 3.3E-06 1.1E-10 85.9 -6.0 258 81-365 56-323 (624)
201 3bee_A Putative YFRE protein; 97.3 0.0013 4.5E-08 52.2 9.4 68 580-647 4-74 (93)
202 3n71_A Histone lysine methyltr 97.2 0.0011 3.9E-08 70.9 10.9 114 559-690 318-449 (490)
203 3qwp_A SET and MYND domain-con 97.2 0.0012 4E-08 69.7 10.6 116 557-690 294-427 (429)
204 2l6j_A TPR repeat-containing p 97.2 0.0013 4.4E-08 54.2 8.6 66 580-645 2-67 (111)
205 3ly7_A Transcriptional activat 97.1 0.014 4.9E-07 58.7 16.2 45 478-524 193-243 (372)
206 1klx_A Cysteine rich protein B 97.1 0.0061 2.1E-07 52.7 12.1 88 558-647 33-128 (138)
207 1zu2_A Mitochondrial import re 97.0 0.00044 1.5E-08 60.5 4.3 99 490-616 13-125 (158)
208 1dce_A Protein (RAB geranylger 97.0 0.0066 2.3E-07 66.6 14.5 148 493-644 43-220 (567)
209 1na3_A Designed protein CTPR2; 97.0 0.0027 9.3E-08 49.9 8.2 64 582-645 9-72 (91)
210 1klx_A Cysteine rich protein B 96.9 0.024 8.4E-07 48.8 14.4 110 392-509 10-127 (138)
211 2kat_A Uncharacterized protein 96.8 0.0041 1.4E-07 51.7 8.0 80 533-614 4-85 (115)
212 3qww_A SET and MYND domain-con 96.7 0.0019 6.5E-08 67.9 7.1 82 563-644 311-410 (433)
213 3ma5_A Tetratricopeptide repea 96.6 0.0048 1.6E-07 49.8 7.2 63 478-542 6-69 (100)
214 3lvg_A Clathrin heavy chain 1; 96.6 0.0042 1.4E-07 63.7 7.7 212 10-233 80-326 (624)
215 3qww_A SET and MYND domain-con 96.5 0.01 3.6E-07 62.3 11.0 69 551-619 341-424 (433)
216 3qwp_A SET and MYND domain-con 96.4 0.02 6.7E-07 60.3 12.4 70 552-621 331-415 (429)
217 3ly7_A Transcriptional activat 96.4 0.03 1E-06 56.3 12.7 133 510-646 190-340 (372)
218 2kc7_A BFR218_protein; tetratr 96.3 0.0099 3.4E-07 47.6 7.4 61 558-618 8-71 (99)
219 2kc7_A BFR218_protein; tetratr 96.2 0.021 7.2E-07 45.6 9.0 85 521-615 7-94 (99)
220 1wy6_A Hypothetical protein ST 96.2 0.44 1.5E-05 39.4 17.3 141 489-648 17-157 (172)
221 1pc2_A Mitochondria fission pr 96.0 0.047 1.6E-06 47.1 10.3 65 580-644 30-99 (152)
222 3mkq_A Coatomer beta'-subunit; 95.9 0.39 1.3E-05 55.5 21.3 100 222-339 663-762 (814)
223 3u64_A Protein TP_0956; tetrat 95.9 0.028 9.7E-07 54.1 9.1 87 566-652 179-276 (301)
224 3mkq_A Coatomer beta'-subunit; 95.6 0.26 8.9E-06 57.0 18.1 102 456-576 661-762 (814)
225 2v5f_A Prolyl 4-hydroxylase su 94.9 0.15 5.1E-06 41.2 9.3 69 554-622 9-86 (104)
226 3mkq_B Coatomer subunit alpha; 94.9 0.84 2.9E-05 40.4 14.4 130 454-608 12-141 (177)
227 3bee_A Putative YFRE protein; 94.7 0.12 4.1E-06 40.7 7.9 67 548-614 4-75 (93)
228 1pc2_A Mitochondria fission pr 94.0 0.19 6.4E-06 43.4 8.0 71 548-618 30-107 (152)
229 3mkq_B Coatomer subunit alpha; 93.5 2 6.7E-05 38.0 13.9 21 454-474 96-116 (177)
230 4gns_B Protein CSD3, chitin bi 92.8 0.32 1.1E-05 54.3 9.6 52 591-642 346-397 (754)
231 4ady_A RPN2, 26S proteasome re 92.6 17 0.00059 41.4 30.6 254 322-584 383-663 (963)
232 1nzn_A CGI-135 protein, fissio 92.4 0.85 2.9E-05 37.7 9.2 65 580-644 33-102 (126)
233 3u64_A Protein TP_0956; tetrat 91.9 0.21 7E-06 48.2 5.7 77 495-576 179-266 (301)
234 2v5f_A Prolyl 4-hydroxylase su 91.8 0.74 2.5E-05 36.9 8.4 65 581-645 4-75 (104)
235 1y8m_A FIS1; mitochondria, unk 90.0 7.9 0.00027 32.6 13.8 66 579-644 36-105 (144)
236 1qsa_A Protein (soluble lytic 88.9 30 0.001 37.7 27.8 115 493-610 228-347 (618)
237 1nzn_A CGI-135 protein, fissio 87.7 3.3 0.00011 34.2 9.0 34 585-618 77-110 (126)
238 1wy6_A Hypothetical protein ST 86.4 13 0.00045 30.9 15.0 55 486-541 98-152 (172)
239 2ff4_A Probable regulatory pro 85.7 1.8 6.3E-05 44.5 8.2 68 585-652 174-246 (388)
240 1qsa_A Protein (soluble lytic 84.9 49 0.0017 36.1 37.4 171 14-207 8-181 (618)
241 3lpz_A GET4 (YOR164C homolog); 84.7 32 0.0011 33.9 21.5 167 450-644 38-215 (336)
242 4h7y_A Dual specificity protei 84.1 9.2 0.00032 32.6 10.0 54 391-445 74-127 (161)
243 4h7y_A Dual specificity protei 82.6 3.7 0.00012 35.0 7.0 53 596-648 74-126 (161)
244 3o48_A Mitochondria fission 1 81.1 9.1 0.00031 31.8 8.7 65 580-644 38-106 (134)
245 1v54_E Cytochrome C oxidase po 81.0 5.9 0.0002 30.9 7.0 62 495-558 26-87 (109)
246 2p58_C Putative type III secre 79.4 16 0.00055 28.4 8.8 82 51-149 26-107 (116)
247 2uwj_G Type III export protein 79.1 15 0.00051 28.5 8.5 82 51-149 25-106 (115)
248 4gns_B Protein CSD3, chitin bi 77.9 6.1 0.00021 44.1 9.0 57 317-373 341-398 (754)
249 3ltj_A Alpharep-4; protein eng 77.6 39 0.0013 30.2 18.7 133 55-195 35-167 (201)
250 3ltm_A Alpha-REP4; protein eng 76.3 44 0.0015 30.2 17.3 17 47-63 32-48 (211)
251 1v54_E Cytochrome C oxidase po 76.2 16 0.00054 28.6 8.0 55 569-623 32-86 (109)
252 4fhn_B Nucleoporin NUP120; pro 75.5 26 0.00089 41.8 14.3 165 216-397 817-991 (1139)
253 3ffl_A Anaphase-promoting comp 74.8 10 0.00036 32.8 7.7 55 453-507 26-91 (167)
254 3ffl_A Anaphase-promoting comp 74.7 15 0.00053 31.8 8.7 21 621-641 127-147 (167)
255 4b4t_P 26S proteasome regulato 74.2 87 0.003 32.5 19.9 95 482-576 140-244 (445)
256 3txn_A 26S proteasome regulato 73.9 70 0.0024 32.5 14.9 23 485-507 105-127 (394)
257 4b4t_P 26S proteasome regulato 73.5 82 0.0028 32.7 16.0 56 520-575 143-202 (445)
258 1zbp_A Hypothetical protein VP 72.8 33 0.0011 32.5 11.2 122 489-617 7-135 (273)
259 1y8m_A FIS1; mitochondria, unk 72.2 39 0.0013 28.4 10.3 33 585-617 80-112 (144)
260 1wdy_A 2-5A-dependent ribonucl 72.1 36 0.0012 32.3 12.4 24 216-239 7-30 (285)
261 2uwj_G Type III export protein 71.9 30 0.001 26.9 8.5 59 456-518 48-106 (115)
262 2y69_E Cytochrome C oxidase su 71.9 13 0.00043 30.8 7.0 71 497-578 71-141 (152)
263 2ff4_A Probable regulatory pro 71.2 13 0.00046 37.9 9.2 67 485-553 177-248 (388)
264 3o48_A Mitochondria fission 1 69.6 21 0.00073 29.6 8.0 35 583-617 79-113 (134)
265 4fhn_B Nucleoporin NUP120; pro 69.6 73 0.0025 37.9 16.3 147 484-647 817-969 (1139)
266 3ltj_A Alpharep-4; protein eng 69.0 63 0.0022 28.8 17.6 82 76-161 25-106 (201)
267 3lpz_A GET4 (YOR164C homolog); 68.2 96 0.0033 30.5 23.0 127 56-204 20-160 (336)
268 3ltm_A Alpha-REP4; protein eng 66.4 74 0.0025 28.6 19.1 19 178-196 93-111 (211)
269 2wpv_A GET4, UPF0363 protein Y 64.1 1.1E+02 0.0038 29.8 21.4 167 450-643 36-215 (312)
270 1zbp_A Hypothetical protein VP 63.0 15 0.00052 34.8 6.7 56 559-614 6-63 (273)
271 2qx5_A Nucleoporin NIC96; mRNA 62.4 90 0.0031 34.2 13.7 28 615-642 532-564 (661)
272 2y69_E Cytochrome C oxidase su 62.3 38 0.0013 28.1 7.9 60 128-188 71-130 (152)
273 1wdy_A 2-5A-dependent ribonucl 61.7 1.1E+02 0.0037 28.8 15.2 58 83-144 6-66 (285)
274 3mv2_A Coatomer subunit alpha; 58.4 96 0.0033 30.2 11.5 60 573-646 196-257 (325)
275 2p58_C Putative type III secre 57.9 65 0.0022 25.1 9.6 52 160-213 22-73 (116)
276 1n11_A Ankyrin; clathrin, BAND 56.8 1.6E+02 0.0055 30.0 14.6 13 434-446 359-371 (437)
277 2wpv_A GET4, UPF0363 protein Y 55.5 1.6E+02 0.0053 28.8 23.3 167 349-542 36-216 (312)
278 4ady_A RPN2, 26S proteasome re 51.8 3.2E+02 0.011 31.3 35.0 252 353-609 381-656 (963)
279 4b4t_R RPN7, 26S proteasome re 49.1 62 0.0021 33.5 9.5 55 451-505 135-194 (429)
280 3esl_A Checkpoint serine/threo 47.9 1.5E+02 0.0053 26.5 10.4 65 584-649 82-148 (202)
281 4b4t_R RPN7, 26S proteasome re 47.5 82 0.0028 32.5 10.2 91 552-642 133-234 (429)
282 3eu9_A Huntingtin-interacting 45.6 80 0.0027 28.8 9.1 15 90-104 17-31 (240)
283 2l0z_A Glycoprotein G2; zinc-b 45.6 7.1 0.00024 24.2 0.9 17 768-784 12-29 (42)
284 3kea_A K1L; tropism, ANK repea 42.2 1.3E+02 0.0045 28.6 10.3 49 55-103 35-83 (285)
285 1n11_A Ankyrin; clathrin, BAND 41.6 3E+02 0.01 28.0 14.9 78 23-105 21-103 (437)
286 2b7e_A PRE-mRNA processing pro 40.6 31 0.0011 23.8 3.6 33 258-291 2-35 (59)
287 1k1a_A B-cell lymphoma 3-encod 40.3 1.2E+02 0.004 27.7 9.4 87 20-106 13-103 (241)
288 1k1a_A B-cell lymphoma 3-encod 37.7 1E+02 0.0035 28.1 8.5 13 501-513 198-210 (241)
289 2nsz_A Programmed cell death p 34.9 81 0.0028 26.0 6.2 57 355-411 16-77 (129)
290 3txn_A 26S proteasome regulato 34.7 3.7E+02 0.013 27.1 28.1 288 314-647 20-345 (394)
291 2lo3_A SAGA-associated factor 34.0 13 0.00045 23.2 0.8 10 741-750 16-25 (44)
292 2nsz_A Programmed cell death p 33.8 1.4E+02 0.0047 24.6 7.4 70 317-386 11-83 (129)
293 3eu9_A Huntingtin-interacting 33.7 2.6E+02 0.0089 25.0 10.7 16 89-104 49-64 (240)
294 3i5p_A Nucleoporin NUP170; hel 33.5 3.1E+02 0.011 28.9 11.7 68 579-646 175-247 (525)
295 3ygs_P Procaspase 9; apoptosis 33.1 43 0.0015 26.0 3.9 32 227-258 53-84 (97)
296 2r9g_A AAA ATPase, central reg 33.1 2.7E+02 0.0091 24.9 9.4 47 380-427 14-63 (204)
297 2k0q_A Putative uncharacterize 32.1 14 0.00048 26.2 0.8 22 761-782 8-29 (74)
298 3eiq_C Programmed cell death p 32.0 3.9E+02 0.013 26.5 16.5 197 184-389 58-296 (358)
299 3mkr_B Coatomer subunit alpha; 31.9 1.4E+02 0.0047 29.1 8.0 61 572-646 186-248 (320)
300 2qx5_A Nucleoporin NIC96; mRNA 31.9 5.4E+02 0.018 28.1 25.2 81 318-403 299-382 (661)
301 1oyz_A Hypothetical protein YI 31.9 3.2E+02 0.011 25.5 19.8 19 177-195 139-157 (280)
302 3hra_A Ankyrin repeat family p 31.8 2E+02 0.0069 25.1 9.2 15 397-411 158-172 (201)
303 2y1l_E Darpin-8.4; hydrolase-i 31.2 1.1E+02 0.0037 26.1 7.0 52 18-73 16-69 (169)
304 3ljn_A Hypothetical protein; a 31.0 1.7E+02 0.0056 29.0 9.3 23 388-410 92-114 (364)
305 3ygs_P Procaspase 9; apoptosis 30.9 43 0.0015 26.0 3.6 35 94-128 52-86 (97)
306 3esl_A Checkpoint serine/threo 29.9 3E+02 0.01 24.6 9.4 55 493-548 93-148 (202)
307 2zu6_B Programmed cell death p 29.9 1.4E+02 0.0047 29.1 7.8 62 349-410 169-235 (307)
308 2zu6_B Programmed cell death p 29.8 1.8E+02 0.006 28.3 8.6 60 214-274 169-233 (307)
309 2ion_A PDCD4, programmed cell 28.0 72 0.0024 27.3 4.8 23 317-339 13-35 (152)
310 3jxi_A Vanilloid receptor-rela 27.9 1.4E+02 0.0047 27.7 7.6 53 119-171 11-72 (260)
311 3jxi_A Vanilloid receptor-rela 27.7 1E+02 0.0034 28.8 6.5 86 154-240 11-119 (260)
312 3kea_A K1L; tropism, ANK repea 27.4 2.1E+02 0.0072 27.1 9.0 179 457-650 38-222 (285)
313 2r9g_A AAA ATPase, central reg 27.0 2.9E+02 0.01 24.6 8.5 45 484-529 16-63 (204)
314 4gq2_M Nucleoporin NUP120; bet 27.0 3.8E+02 0.013 30.9 12.3 128 485-629 816-949 (950)
315 1qc6_A EVH1 domain from ENA/VA 26.5 21 0.00073 29.6 1.2 41 732-780 43-87 (130)
316 2ion_A PDCD4, programmed cell 26.3 1.3E+02 0.0043 25.7 6.1 64 348-411 11-79 (152)
317 2pk8_A Uncharacterized protein 26.2 50 0.0017 24.9 2.9 63 673-743 13-78 (103)
318 2d2s_A Exocyst complex compone 25.9 1.7E+02 0.0058 27.1 7.3 89 116-207 24-118 (235)
319 4a1g_A Mitotic checkpoint seri 25.0 3.2E+02 0.011 23.2 9.5 50 600-649 83-134 (152)
320 1ug3_A EIF4GI, eukaryotic prot 24.9 4.3E+02 0.015 25.9 10.7 26 317-342 15-40 (339)
321 3b7b_A Euchromatic histone-lys 24.8 3.5E+02 0.012 24.2 9.8 22 419-440 214-235 (237)
322 2etb_A Transient receptor pote 24.6 1.3E+02 0.0046 27.7 6.8 57 117-173 6-71 (256)
323 2dod_A Transcription elongatio 23.7 98 0.0033 23.1 4.2 35 258-293 16-50 (82)
324 1ug3_A EIF4GI, eukaryotic prot 23.5 3.1E+02 0.011 27.0 9.3 70 184-253 15-88 (339)
325 2d2s_A Exocyst complex compone 22.9 3.7E+02 0.013 24.8 9.0 23 383-405 24-46 (235)
326 3ctd_A Putative ATPase, AAA fa 22.2 4.3E+02 0.015 23.8 8.9 51 376-426 31-84 (213)
327 4ets_A Ferric uptake regulatio 22.1 2.2E+02 0.0075 24.4 6.9 70 258-328 13-84 (162)
328 3bge_A Predicted ATPase; struc 22.1 3.4E+02 0.012 24.2 7.9 45 382-426 9-56 (201)
329 3bqo_A Telomeric repeat-bindin 21.9 4.3E+02 0.015 23.6 8.4 60 566-625 94-160 (211)
330 1uzc_A Hypothetical protein FL 21.4 1.2E+02 0.0041 21.9 4.2 36 257-293 13-48 (71)
331 3bge_A Predicted ATPase; struc 21.4 3.1E+02 0.01 24.5 7.5 46 484-529 9-57 (201)
332 2p1h_A APAF-1, apoptotic prote 21.0 75 0.0025 24.3 3.3 31 95-125 52-82 (94)
333 3b7b_A Euchromatic histone-lys 21.0 4.5E+02 0.015 23.5 9.9 20 286-305 215-234 (237)
334 2p1h_A APAF-1, apoptotic prote 20.5 98 0.0034 23.6 3.9 59 164-226 24-82 (94)
335 2wvi_A Mitotic checkpoint seri 20.2 4.2E+02 0.014 22.8 9.4 49 601-649 79-129 (164)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.9e-41 Score=379.41 Aligned_cols=500 Identities=12% Similarity=0.001 Sum_probs=351.1
Q ss_pred HHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHH
Q 003937 89 YAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVH 168 (785)
Q Consensus 89 ~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 168 (785)
+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|++++|.+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 44567777888888888888999999999999999999999999999984 5678889999999999999999999999
Q ss_pred HHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHH
Q 003937 169 SFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSM 248 (785)
Q Consensus 169 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~l 248 (785)
+.+... +++..+++.++.+|.++|++++|.++|+++...+... .++.+.+. ++.-...+..+|+.+
T Consensus 141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~-------~~~~~~~~~~~~~~l 206 (597)
T 2xpi_A 141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLM-------QDGGIKLEASMCYLR 206 (597)
T ss_dssp HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------C-------CCSSCCHHHHHHHHH
T ss_pred HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----cccccccc-------cccccchhHHHHHHH
Confidence 887644 6788999999999999999999999999654222100 00001110 111123367899999
Q ss_pred HHHHhhCCCchHHHHHHHHhhhcCCCCCChhhH-HHHHHHHhcccchhh--HHHH-HHHHHHhcCCCCcchHHHHHHHHH
Q 003937 249 IAGYSQNGYDFEALGMFANMLKDSSLKPDKFTL-ASTLSACANLEKLKL--GKQI-HAYIIRTEFDATGPVGNALISCYA 324 (785)
Q Consensus 249 i~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~-~~ll~~~~~~~~~~~--a~~~-~~~~~~~g~~~~~~~~~~li~~y~ 324 (785)
+.+|.+.|++++|+++|++|+.. .|+..+. ..+...+...+..+. ...+ +..+...+......+
T Consensus 207 ~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------- 274 (597)
T 2xpi_A 207 GQVYTNLSNFDRAKECYKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL--------- 274 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHH---------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHH---------
Confidence 99999999999999999999543 3544333 223222222211111 1111 222222222222233
Q ss_pred hcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHHcCChhHHHHHHHH
Q 003937 325 KVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRD--RDVVAWTAMLVGYEQNGLNKDAVELFRS 402 (785)
Q Consensus 325 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~ 402 (785)
|+.++..|.+.|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|++
T Consensus 275 ------------------------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 330 (597)
T 2xpi_A 275 ------------------------YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTK 330 (597)
T ss_dssp ------------------------HHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ------------------------HHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 33444444455567777777776665 5677777777777777777777777777
Q ss_pred HHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChh
Q 003937 403 MVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETV 480 (785)
Q Consensus 403 m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~ 480 (785)
|.+.+. .+..++..++.++...|+.++|..++..+.+.. +.+..+++.++.+|.++|++++|.++|+++.. +.+..
T Consensus 331 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 408 (597)
T 2xpi_A 331 ILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP 408 (597)
T ss_dssp HHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH
Confidence 776542 255667777777777777777777777777543 45677778888888888888888888887642 23577
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHH
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLL 560 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 560 (785)
+|+.++.+|.+.|++++|+++|++|.+.+ +.+..++..++.+|.+.|++++|.++|+++.+. .+.+..+|+.++.+|
T Consensus 409 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (597)
T 2xpi_A 409 AWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVA 485 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 88888888888888888888888888742 335678888888888888888888888888762 234577888888888
Q ss_pred hhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 561 GRAGLLQEAYNFIENM-------PLEPD--VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 561 ~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|...++++++.+|+++.+|..++.+|.+.|+
T Consensus 486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 8888888888888887 44676 67888888888888888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHHHhC
Q 003937 632 WEDAANIRKSMKYV 645 (785)
Q Consensus 632 ~~~a~~~~~~m~~~ 645 (785)
+++|.++++++.+.
T Consensus 566 ~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 566 PGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888888764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-40 Score=374.67 Aligned_cols=516 Identities=9% Similarity=-0.014 Sum_probs=332.6
Q ss_pred HHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHhhCCC--CCccHHHHHHHHHHhCCChhHHHHHH
Q 003937 56 NFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPN--RDSVSWTTIIVTYNEIGRFKNAIRMF 133 (785)
Q Consensus 56 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~a~~~~ 133 (785)
..+.+.|.+..++..|+.++.++...|+.++..|.+.|++++|..+|++|.. |+..+|+.++.+|.+.|++++|+.+|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 3456778888899999999989999999999999999999999999999863 78889999999999999999999999
Q ss_pred HHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcch
Q 003937 134 VEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSS 213 (785)
Q Consensus 134 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 213 (785)
+.+.. ..++..+++.++.++.+.|++++|.++++.+ .|+... ...+.+.++. +.-...++.+
T Consensus 141 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~----~~~~~~~~~~-------~~~~~~~~~~ 202 (597)
T 2xpi_A 141 TKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGET-----NPFRKD----EKNANKLLMQ-------DGGIKLEASM 202 (597)
T ss_dssp HHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSS-----CTTC--------------CC-------CSSCCHHHHH
T ss_pred HHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhcc-----CCcccc----cccccccccc-------ccccchhHHH
Confidence 99864 3678899999999999999999999999852 121100 0000000000 0001223445
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhcCCC---CcccHHHHHHHHhhCCCchHHHH--H-HHHhhhcCCCCCChhhHHHHHHH
Q 003937 214 WNVVVSLHIHSGRLDLARAQFDQMIER---DVVTWNSMIAGYSQNGYDFEALG--M-FANMLKDSSLKPDKFTLASTLSA 287 (785)
Q Consensus 214 ~~~li~~~~~~g~~~~A~~l~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~--l-~~~ml~~~g~~p~~~t~~~ll~~ 287 (785)
|+.++.+|.+.|++++|.++|++|.+. +...|..+...+...+..+.+.. + +..+ ...+..+...+|..++..
T Consensus 203 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~ 281 (597)
T 2xpi_A 203 CYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTY-SKEDAAFLRSLYMLKLNK 281 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHH-HGGGHHHHHHHHHTTSCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCccc-ccchHHHHHHHHHHHHHH
Confidence 555666666666666666666555332 23344444443333322221111 1 2333 222222233333333444
Q ss_pred HhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHH
Q 003937 288 CANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARR 367 (785)
Q Consensus 288 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 367 (785)
+.+.|+++.|.+++..+.+. +++..+++.++.+|.+.| ++++|..
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g---------------------------------~~~~A~~ 326 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRS---------------------------------RFIDVLA 326 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTT---------------------------------CHHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhc---------------------------------CHHHHHH
Confidence 44444444444444443332 233444444444444444 5555555
Q ss_pred HHHhcCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCC
Q 003937 368 IFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEA 444 (785)
Q Consensus 368 ~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 444 (785)
+|+++.+ .+..+|+.++.+|.+.|++++|..+|++|.... ..+..++..+...+.+.|++++|.+++..+.+.. +
T Consensus 327 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 404 (597)
T 2xpi_A 327 ITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-P 404 (597)
T ss_dssp HHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-C
Confidence 5544431 234455555555555555555555555555321 2234455555555555555555555555555432 3
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 003937 445 SSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLT 522 (785)
Q Consensus 445 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 522 (785)
.+..+++.++.+|.+.|++++|.++|+++.. +++..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..++.
T Consensus 405 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 483 (597)
T 2xpi_A 405 QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGV 483 (597)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3566778888888888999999988887742 2377889999999999999999999999998742 335678999999
Q ss_pred HhhccCCHHHHHHHHHHhhhcC---CCCCC--chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVH---KIKPT--PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH 595 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~---~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 595 (785)
+|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++++ ...| +..+|..+...|...
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK 563 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 9999999999999999887621 55777 678999999999999999999999987 3345 788999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 003937 596 KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS 628 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 628 (785)
|++++|...++++++++|+++.++..|.++|..
T Consensus 564 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 564 KIPGLAITHLHESLAISPNEIMASDLLKRALEE 596 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence 999999999999999999999999999988753
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=3e-27 Score=256.72 Aligned_cols=186 Identities=12% Similarity=0.152 Sum_probs=175.4
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCc---------hHHHHHHHHHHHHhCCCCch
Q 003937 377 VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLAS---------LDHGKQIHASALRSGEASSL 447 (785)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~---------~~~a~~~~~~~~~~g~~~~~ 447 (785)
...++.+|.+|++.|+.++|+++|++|.+.|++||.+||+++|.+|++.+. ++.|.++|+.|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346888999999999999999999999999999999999999999987654 68899999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhccc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 003937 448 SVSNALITMYSKAGNINAARRVFNLIHW---RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTAC 524 (785)
Q Consensus 448 ~~~~~li~~y~~~g~~~~A~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 524 (785)
.+||+||++|++.|++++|.++|++|.. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||++||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999974 4899999999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc
Q 003937 525 THGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA 563 (785)
Q Consensus 525 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 563 (785)
++.|++++|.+++++|.+ .+..|+..+|+.+++.|...
T Consensus 186 ~~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999987 79999999999999998764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.4e-26 Score=251.40 Aligned_cols=201 Identities=14% Similarity=0.149 Sum_probs=173.7
Q ss_pred hHHHHHHHHHHHcCCCCCH-hhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC---------H
Q 003937 394 KDAVELFRSMVREGPKPNN-YTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGN---------I 463 (785)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---------~ 463 (785)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|+.|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 3456677788877776543 45888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHHhccc---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHh
Q 003937 464 NAARRVFNLIHW---RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMM 540 (785)
Q Consensus 464 ~~A~~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m 540 (785)
++|.++|++|.. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999964 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 003937 541 KNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM---PLEPDVVAWGSLLSACRVH 595 (785)
Q Consensus 541 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~ll~~~~~~ 595 (785)
.+ .|+.||..+|++||++|++.|++++|.+++++| +..|+..||+.++..++..
T Consensus 167 ~~-~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VE-SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hh-cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 97 799999999999999999999999999999999 7899999999999998754
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=8.1e-24 Score=225.96 Aligned_cols=370 Identities=15% Similarity=0.146 Sum_probs=258.8
Q ss_pred HHhhCCCchHHHHHHHHhhhcCCCCCChh-hHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCh
Q 003937 251 GYSQNGYDFEALGMFANMLKDSSLKPDKF-TLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGV 329 (785)
Q Consensus 251 ~~~~~g~~~~A~~l~~~ml~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~ 329 (785)
.+.+.|++++|+..+.+++.. .|+.. .+..+...+...++++.+...+...++.. +.+...+..+...|.+.|++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 344555555555555555322 23322 22233333344555555555555544432 33445566666667777777
Q ss_pred HHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC--C-CHhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 003937 330 EIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD--R-DVVAWTAMLVGYEQNGLNKDAVELFRSMVR 405 (785)
Q Consensus 330 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 405 (785)
++|...|+++....| +..+|..++..+.+.|++++|...|+++.+ | +...+..+...+...|++++|++.|+++..
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 777777766554444 445667777777777777777777766543 2 334556666667777777777777777766
Q ss_pred cCCCC-CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc-cCC-ChhHH
Q 003937 406 EGPKP-NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIH-WRQ-ETVSW 482 (785)
Q Consensus 406 ~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~p-~~~~~ 482 (785)
. .| +..++..+...+...|+++.|...+..+++.. +.+...+..+...+...|++++|...|++.. ..| +..+|
T Consensus 164 ~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 240 (388)
T 1w3b_A 164 T--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH 240 (388)
T ss_dssp H--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence 4 23 34556666667777777777777777777654 3345667778888888888888888887653 223 56788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHh
Q 003937 483 TSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLG 561 (785)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 561 (785)
..+...|...|++++|++.|+++.+ ..|+ ..++..+..++...|++++|...++++.+. .+++...+..+...|.
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHH
Confidence 8888889999999999999999888 4564 457888888888899999999999888762 3456778888888999
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 562 RAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 562 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
+.|++++|.+.++++ ...|+ ..+|..+...+.+.|++++|...++++++++|+++..|..++.+|...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999988887 45554 67888888889999999999999999999999888888888888877663
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.93 E-value=4e-23 Score=220.54 Aligned_cols=352 Identities=15% Similarity=0.135 Sum_probs=305.3
Q ss_pred HHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHH
Q 003937 286 SACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGP 364 (785)
Q Consensus 286 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 364 (785)
..+.+.|+++.|.+.+..+.+.. +.+...+..+...+...|++++|...++......| +..+|..++..|.+.|++++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 44567899999999998888764 34456677788899999999999999998665555 78899999999999999999
Q ss_pred HHHHHHhcCC--C-CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhccCchHHHHHHHHHHHH
Q 003937 365 ARRIFDSLRD--R-DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYT-LSAMLSVSSSLASLDHGKQIHASALR 440 (785)
Q Consensus 365 A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~ 440 (785)
|...|+++.. | +..+|..+...+.+.|++++|+..|+++.+. .|+... +..+...+...|++++|...+..+.+
T Consensus 86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999998763 3 5668999999999999999999999999875 466544 55566678889999999999999998
Q ss_pred hCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHH
Q 003937 441 SGEASSLSVSNALITMYSKAGNINAARRVFNLIHW-RQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITY 517 (785)
Q Consensus 441 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 517 (785)
.. +.+...++.+...|.+.|++++|...|+++.. .| +...|..+...+...|++++|+..|++..+ +.|+ ..++
T Consensus 164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~ 240 (388)
T 1w3b_A 164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVH 240 (388)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHH
Confidence 74 44578889999999999999999999998742 23 567899999999999999999999999988 5675 5688
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc
Q 003937 518 VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLE-PDVVAWGSLLSACRVH 595 (785)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~ 595 (785)
..+..++...|++++|...|+++.+. -+.+...|..+...|.+.|++++|.+.++++ ... ++..+|..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc
Confidence 99999999999999999999999862 2334678999999999999999999999998 333 4688999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 596 KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
|++++|...++++++..|++..++..++.+|.+.|++++|...++++.+.
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999763
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.3e-20 Score=209.32 Aligned_cols=423 Identities=10% Similarity=0.007 Sum_probs=283.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHhhhcC--CCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCC-hhhHHHHHHHHh
Q 003937 213 SWNVVVSLHIHSGRLDLARAQFDQMI--ERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPD-KFTLASTLSACA 289 (785)
Q Consensus 213 ~~~~li~~~~~~g~~~~A~~l~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~-~~t~~~ll~~~~ 289 (785)
.|......+.+.|++++|.+.|+++. .|+..+|..+..+|.+.|++++|+..|++++.. .|+ ...+..+..++.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALEL---KPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc---ChHHHHHHHHHHHHHH
Confidence 44455556666666666666666552 245556666666666666666666666665332 132 234555555555
Q ss_pred cccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCC--CchHhHHHH---HHHHHhcCCHHH
Q 003937 290 NLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISY--LNVIAFTTL---LDGYIKIGDIGP 364 (785)
Q Consensus 290 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l---i~~~~~~g~~~~ 364 (785)
..|+++.|...+..+.+.+. ++......++..+.+......+.+.+..+.... ++...+... ............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 55555555555555555442 222333333333333332222222221111000 000000000 000000011111
Q ss_pred HHHHHHhcCC---------C-CHhHHHHHHHHHHH---cCChhHHHHHHHHHHH-----cCCCC--------CHhhHHHH
Q 003937 365 ARRIFDSLRD---------R-DVVAWTAMLVGYEQ---NGLNKDAVELFRSMVR-----EGPKP--------NNYTLSAM 418 (785)
Q Consensus 365 A~~~f~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~l 418 (785)
....+..... + +...|......+.. .|++++|+..|+++.. ....| +..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 1111111111 1 24444444444554 8999999999999987 32222 23456677
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChH
Q 003937 419 LSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGE 496 (785)
Q Consensus 419 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~ 496 (785)
...+...|+++.|...+..+.+.... ...+..+...|...|++++|...|++.... .+...|..+...|...|+++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHH
Confidence 77888999999999999999988644 888889999999999999999999987532 36778999999999999999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHh
Q 003937 497 EAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIEN 575 (785)
Q Consensus 497 ~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 575 (785)
+|+..|++..+. .|+ ..++..+...+...|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.+++
T Consensus 322 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 322 QAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp HHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999984 454 568888999999999999999999998863 234577888999999999999999999988
Q ss_pred C----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 576 M----PLEPD----VVAWGSLLSACRV---HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 576 ~----~~~p~----~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+ +-.|+ ..+|..+...+.. .|++++|...++++++..|+++.++..++.+|...|++++|...+++..+
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 7 22232 4488999999999 99999999999999999999999999999999999999999999999876
Q ss_pred C
Q 003937 645 V 645 (785)
Q Consensus 645 ~ 645 (785)
.
T Consensus 478 ~ 478 (514)
T 2gw1_A 478 L 478 (514)
T ss_dssp H
T ss_pred h
Confidence 4
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=1.5e-20 Score=208.61 Aligned_cols=443 Identities=11% Similarity=0.015 Sum_probs=281.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 003937 112 SWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYA 191 (785)
Q Consensus 112 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~ 191 (785)
.|......+.+.|++++|+..|+++.+.. |+..+|..+..++...|+++.|.+.++.+++.. +.+..++..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 45666677778888888888888887754 677788888888888888888888888888775 455667777788888
Q ss_pred hCCChHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHhhhcCC----CCcccHHHHHHHHhhCCCchHHHHH
Q 003937 192 KVGDEMMAKAVFDGMRLKN---VSSWNVVVSLHIHSGRLDLARAQFDQMIE----RDVVTWNSMIAGYSQNGYDFEALGM 264 (785)
Q Consensus 192 ~~g~~~~A~~~~~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l 264 (785)
+.|++++|...|+++...+ ......++..+.+......+.+.+..+.. ++...++.-..
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------------- 150 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE-------------- 150 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH--------------
Confidence 8888888888877664221 11122222222221111111111111100 00000000000
Q ss_pred HHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC
Q 003937 265 FANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL 344 (785)
Q Consensus 265 ~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~ 344 (785)
.. ......|+.......+..+....... ....+.
T Consensus 151 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------~~~~~~ 184 (514)
T 2gw1_A 151 --RK-DKQENLPSVTSMASFFGIFKPELTFA-------------------------------------------NYDESN 184 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCCS-------------------------------------------SCCSSC
T ss_pred --HH-hhccCCchhHHHHHHHhhcCHHHHHH-------------------------------------------HhcCCc
Confidence 00 00111122211111111110000000 000011
Q ss_pred chHhHHHHHHHHHh---cCCHHHHHHHHHhcCC-----------------CCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003937 345 NVIAFTTLLDGYIK---IGDIGPARRIFDSLRD-----------------RDVVAWTAMLVGYEQNGLNKDAVELFRSMV 404 (785)
Q Consensus 345 ~~~~~~~li~~~~~---~g~~~~A~~~f~~~~~-----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 404 (785)
+...+......+.. .|++++|...|+.+.+ .+..+|..+...+...|++++|+..|+++.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l 264 (514)
T 2gw1_A 185 EADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAI 264 (514)
T ss_dssp HHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 12223333332222 4445555554444322 124566677777777888888888887777
Q ss_pred HcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHH
Q 003937 405 REGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSW 482 (785)
Q Consensus 405 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~ 482 (785)
... |+...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|++... +.+...|
T Consensus 265 ~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 341 (514)
T 2gw1_A 265 ELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPY 341 (514)
T ss_dssp HHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHH
T ss_pred hhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHH
Confidence 654 336666677777777888888888877776653 33566778888899999999999999987642 2267788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC----chhHHHHH
Q 003937 483 TSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT----PSHFASMV 557 (785)
Q Consensus 483 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li 557 (785)
..+...|...|++++|+..|+++.+. .| +..++..+...+...|++++|...++.+.+...-.++ ...+..+.
T Consensus 342 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 419 (514)
T 2gw1_A 342 IQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA 419 (514)
T ss_dssp HHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHH
Confidence 88999999999999999999999884 44 4568888888999999999999999988753222222 33788899
Q ss_pred HHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 558 DLLGR---AGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 558 ~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
..|.+ .|++++|.+.++++ ...| +..+|..+...+...|++++|...+++++++.|+++..+..+
T Consensus 420 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 420 TLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 99999 99999999999887 3345 577888999999999999999999999999999877766555
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=1.6e-20 Score=204.79 Aligned_cols=322 Identities=13% Similarity=0.075 Sum_probs=258.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHH
Q 003937 312 TGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGY 387 (785)
Q Consensus 312 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 387 (785)
+...+..+...|.+.|++++|..+|+++....| +..+|..++..|.+.|++++|...|+.+.+ .+..+|..+...|
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 104 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 345566777778888888888888887655444 677788888888888888888888887653 3567788888888
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCH----hhHHHH------------HHHHhccCchHHHHHHHHHHHHhCCCCchHHHH
Q 003937 388 EQNGLNKDAVELFRSMVREGPKPNN----YTLSAM------------LSVSSSLASLDHGKQIHASALRSGEASSLSVSN 451 (785)
Q Consensus 388 ~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 451 (785)
.+.|++++|+..|+++... .|+. ..+..+ ...+...|+++.|...+..+.+.. +.+..++.
T Consensus 105 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 8888888888888888764 4443 333333 334778899999999999888764 45678889
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHHH--------
Q 003937 452 ALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVGV-------- 520 (785)
Q Consensus 452 ~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l-------- 520 (785)
.+..+|.+.|++++|.+.|+++.. +.+..+|..+...|...|++++|+..|+++.+ ..|+.. .+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHH
Confidence 999999999999999999998752 34788999999999999999999999999997 566654 34333
Q ss_pred ----HHHhhccCCHHHHHHHHHHhhhcCCCCCC-----chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 003937 521 ----LTACTHGGLVEQGQRYYNMMKNVHKIKPT-----PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLL 589 (785)
Q Consensus 521 ----l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll 589 (785)
..+|.+.|++++|..+|+++.+ +.|+ ..++..+...|.+.|++++|.+.++++ ...| +..+|..+.
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMK---TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH---HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 7789999999999999999986 3454 457889999999999999999999987 4455 588999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH------------HHHHhcC-----ChHHHHHHHHH
Q 003937 590 SACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALC------------NLYSSCG-----KWEDAANIRKS 641 (785)
Q Consensus 590 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 641 (785)
.+|...|++++|...++++++++|+++.++..+. +.|...| +.+++.+.+++
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999998 4566666 55566666665
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.4e-19 Score=202.12 Aligned_cols=289 Identities=11% Similarity=0.057 Sum_probs=142.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhCCCCCch-HhHHHHHHHHHh--------cCCHHHHHHHHHhcCCC---C-------H
Q 003937 317 NALISCYAKVGGVEIAQKIVEQSGISYLNV-IAFTTLLDGYIK--------IGDIGPARRIFDSLRDR---D-------V 377 (785)
Q Consensus 317 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~--------~g~~~~A~~~f~~~~~~---~-------~ 377 (785)
...+..|....+.+.+...+.+.....+.. .....+...+.. .|++++|..+|+.+.+. + .
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~ 243 (537)
T 3fp2_A 164 NTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAA 243 (537)
T ss_dssp HHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHH
T ss_pred HhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHH
Confidence 444555666676666665555544444322 222222222221 13555666666555432 1 1
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003937 378 VAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY 457 (785)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 457 (785)
.+|..+...+...|++++|+..|++.... .|+...+..+...+...|+++.|...+..+.+.. +.
T Consensus 244 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~------------ 308 (537)
T 3fp2_A 244 LALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PE------------ 308 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TT------------
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CC------------
Confidence 13444445555556666666666665553 2334444444445555555555555555544432 22
Q ss_pred HhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHH
Q 003937 458 SKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRY 536 (785)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 536 (785)
+..+|..+...|...|++++|+..|++..+. .|+ ..++..+..++...|++++|..+
T Consensus 309 --------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~ 366 (537)
T 3fp2_A 309 --------------------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAF 366 (537)
T ss_dssp --------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444444555555555555555554442 232 23444444455555555555555
Q ss_pred HHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC----CCCC----CHHHHHHHHHHHHhc----------CCH
Q 003937 537 YNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM----PLEP----DVVAWGSLLSACRVH----------KNL 598 (785)
Q Consensus 537 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p----~~~~~~~ll~~~~~~----------g~~ 598 (785)
++++.+. .+.+...+..+...|.+.|++++|.+.++++ +..+ ....+..+...+... |++
T Consensus 367 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 444 (537)
T 3fp2_A 367 FNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444 (537)
T ss_dssp HHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHH
T ss_pred HHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHH
Confidence 5544431 1222334444555555555555555555443 0001 111223333444444 666
Q ss_pred HHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 599 DLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 599 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
++|...++++++..|+++.++..++.+|...|++++|...+++..+
T Consensus 445 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666654
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=4.9e-19 Score=192.90 Aligned_cols=367 Identities=11% Similarity=-0.006 Sum_probs=239.3
Q ss_pred CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHH
Q 003937 241 DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALI 320 (785)
Q Consensus 241 ~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 320 (785)
+...|..+...+.+.|++++|+.+|++++.. .+.+..++..+..++...|+++.|...+..+++.+ +.+..++..+.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 5677888999999999999999999998543 22356667777777777788888888887777765 33456677777
Q ss_pred HHHHhcCChHHHHHHHHHhCCCCC-ch---HhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHH
Q 003937 321 SCYAKVGGVEIAQKIVEQSGISYL-NV---IAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDA 396 (785)
Q Consensus 321 ~~y~~~g~~~~A~~~~~~~~~~~~-~~---~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 396 (785)
..|.+.|++++|.+.|+++....| +. .+|..++..+... .+..+...+.+.|++++|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------------------~~~~~a~~~~~~~~~~~A 162 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-------------------RLRSQALNAFGSGDYTAA 162 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-------------------HHHHHHHHHHHcCCHHHH
Confidence 777777777777777777655555 33 4555554432111 111223335556666666
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc-c
Q 003937 397 VELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIH-W 475 (785)
Q Consensus 397 ~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~ 475 (785)
+..|+++.... +.+...+..+..++...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. .
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 163 IAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666665532 2244455555666666666666666666665542 3345666777777777777777777777653 2
Q ss_pred CC-ChhHHHHH------------HHHHHHcCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHhhccCCHHHHHHHH
Q 003937 476 RQ-ETVSWTSM------------IVALAQHGLGEEAIQLFERMLELGIKPD-----HITYVGVLTACTHGGLVEQGQRYY 537 (785)
Q Consensus 476 ~p-~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~t~~~ll~a~~~~g~~~~a~~~~ 537 (785)
.| +...|..+ ...+...|++++|+..|+++.+ +.|+ ...+..+..++.+.|++++|...+
T Consensus 241 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 241 DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 22 33344443 6777888888888888888877 4555 236677777888888888888888
Q ss_pred HHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-----CH
Q 003937 538 NMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSA------------CRVHK-----NL 598 (785)
Q Consensus 538 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~------------~~~~g-----~~ 598 (785)
+.+.+. .+.+...+..+..+|.+.|++++|.+.++++ .+.|+ ...|..+..+ |...| +.
T Consensus 319 ~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~ 396 (450)
T 2y4t_A 319 SEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKK 396 (450)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCT
T ss_pred HHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCH
Confidence 887652 2335677888888888888888888888877 55664 4455555422 22333 56
Q ss_pred HHHHHHHHH-HHhhCCCCch----------hHHHHHHHHHhcCChHHH
Q 003937 599 DLGKIAAEK-LLLIEPDNSG----------AYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 599 ~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~a 635 (785)
+++.+.+++ +++..|++.. .+..+..+|...|+.++.
T Consensus 397 ~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 397 QEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp THHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 677888886 6777775321 455566666666655543
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=1e-18 Score=195.11 Aligned_cols=431 Identities=12% Similarity=0.071 Sum_probs=273.4
Q ss_pred ccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 003937 110 SVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNM 189 (785)
Q Consensus 110 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 189 (785)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|.+.++.+++.. +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 3456777778888888888888888887643 2356677777778888888888888888888775 4566777777788
Q ss_pred HHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhh
Q 003937 190 YAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANML 269 (785)
Q Consensus 190 ~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml 269 (785)
|...|++++|...|+.+. . +....+..+..+...+...+|+..+++++
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~-------------------------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~l 150 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-L-------------------------------NGDFDGASIEPMLERNLNKQAMKVLNENL 150 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC-------------------------------------------CHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHh-c-------------------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888776432 1 11111222333444444566666666663
Q ss_pred hc-----CCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhc--------CChHHHH
Q 003937 270 KD-----SSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGP---VGNALISCYAKV--------GGVEIAQ 333 (785)
Q Consensus 270 ~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~---~~~~li~~y~~~--------g~~~~A~ 333 (785)
.. ....|+...+...+ ...+.+.+...+ ......+.. ....+...|... |++++|.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~ 222 (537)
T 3fp2_A 151 SKDEGRGSQVLPSNTSLASFF----GIFDSHLEVSSV----NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKST 222 (537)
T ss_dssp C-------CCCCCHHHHHHHH----HTSCHHHHHHTS----CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHH
T ss_pred HhCccccccccchHhHHHHHH----HhcChHHHHHHH----hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 21 12233333332222 222222211111 011122222 444555444433 4889999
Q ss_pred HHHHHhCCCCCc--------hHhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHHcCChhHHHHHHHHH
Q 003937 334 KIVEQSGISYLN--------VIAFTTLLDGYIKIGDIGPARRIFDSLRD--RDVVAWTAMLVGYEQNGLNKDAVELFRSM 403 (785)
Q Consensus 334 ~~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 403 (785)
.+|+++....|+ ..++..+...+...|++++|...|+...+ |+...|..+...|...|++++|+..|+++
T Consensus 223 ~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 302 (537)
T 3fp2_A 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKA 302 (537)
T ss_dssp HHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999998777664 33577888899999999999999998864 56788888999999999999999999999
Q ss_pred HHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhH
Q 003937 404 VREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVS 481 (785)
Q Consensus 404 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~ 481 (785)
..... .+..++.. +...|...|++++|...|++... +.+...
T Consensus 303 ~~~~~-~~~~~~~~-----------------------------------l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 346 (537)
T 3fp2_A 303 VDLNP-EYPPTYYH-----------------------------------RGQMYFILQDYKNAKEDFQKAQSLNPENVYP 346 (537)
T ss_dssp HHHCT-TCHHHHHH-----------------------------------HHHHHHHTTCHHHHHHHHHHHHHHCTTCSHH
T ss_pred hccCC-CCHHHHHH-----------------------------------HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 87532 23344433 34445555555555555554421 114556
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC----CchhHHHH
Q 003937 482 WTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP----TPSHFASM 556 (785)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~l 556 (785)
|..+...|...|++++|+..|+++.+. .|+ ..++..+...+...|++++|...++++.+...-.+ ....+..+
T Consensus 347 ~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (537)
T 3fp2_A 347 YIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 666677777777777777777777663 343 34666666677777777777777776654211111 12223344
Q ss_pred HHHHhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 003937 557 VDLLGRA----------GLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYS 620 (785)
Q Consensus 557 i~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 620 (785)
...|.+. |++++|.+.+++. ...| +..+|..+...+...|+.++|...+++++++.|++.....
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 5666666 8899999888887 3345 5678888999999999999999999999999997665433
No 13
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=2.2e-15 Score=172.52 Aligned_cols=280 Identities=13% Similarity=0.159 Sum_probs=224.7
Q ss_pred hcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 003937 325 KVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELFRSMV 404 (785)
Q Consensus 325 ~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 404 (785)
..|++++|.++.++.. +..+|..+..++.+.|++++|...|... .|...|..++..+.+.|++++|++.|...+
T Consensus 1088 ~i~nldrAiE~Aervn----~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred HHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7788889888888663 3678999999999999999999999764 677788889999999999999999998877
Q ss_pred HcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHH
Q 003937 405 REGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTS 484 (785)
Q Consensus 405 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~ 484 (785)
+.. ++....+.+..+|++.++++....+. + .++...+..+.+.|...|++++|...|... ..|..
T Consensus 1162 k~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA------~ny~r 1226 (1630)
T 1xi4_A 1162 KKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------SNFGR 1226 (1630)
T ss_pred hhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh------hHHHH
Confidence 654 44433445888899998888644442 1 345566677999999999999999999975 48999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcC
Q 003937 485 MIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAG 564 (785)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 564 (785)
+...|.+.|++++|++.+++. -+..+|..+..+|...|.+..|...... +..+...+..++..|.+.|
T Consensus 1227 LA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G 1294 (1630)
T 1xi4_A 1227 LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRG 1294 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcC
Confidence 999999999999999999876 4457899999999999999999887643 3345667889999999999
Q ss_pred CHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh--cCCHHHHHHHHHHHHhhCC-----CCchhHHHHHHHHHhcCChHHH
Q 003937 565 LLQEAYNFIENM-PLEPD-VVAWGSLLSACRV--HKNLDLGKIAAEKLLLIEP-----DNSGAYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 565 ~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~a 635 (785)
.+++|..+++.. +++|. ...|.-|...+.+ -+++.++.+.|..-..+.| .+...|.-+.-.|.+.|.|+.|
T Consensus 1295 ~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA 1374 (1630)
T 1xi4_A 1295 YFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 1374 (1630)
T ss_pred CHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHH
Confidence 999999999776 55553 4466555555544 4566677777777666666 5677899999999999999999
Q ss_pred HH
Q 003937 636 AN 637 (785)
Q Consensus 636 ~~ 637 (785)
..
T Consensus 1375 ~~ 1376 (1630)
T 1xi4_A 1375 II 1376 (1630)
T ss_pred HH
Confidence 85
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.82 E-value=7.8e-15 Score=168.02 Aligned_cols=513 Identities=10% Similarity=0.060 Sum_probs=350.6
Q ss_pred CChhhHHHHHHHHHccCChhHHHHHHhhCC---------------CCCc----------------cH------HHHHHHH
Q 003937 77 KTLCSWNTILSAYAKQGRLDLACEVFNLMP---------------NRDS----------------VS------WTTIIVT 119 (785)
Q Consensus 77 ~~~~~~~~li~~~~~~g~~~~A~~~f~~m~---------------~~~~----------------~~------~~~li~~ 119 (785)
.|.......|.+.++.|.+.+..++-++-. -+|. +. ....|..
T Consensus 723 ~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~ 802 (1630)
T 1xi4_A 723 QDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEI 802 (1630)
T ss_pred CChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHH
Confidence 466677888888888888777766655421 1111 00 1234555
Q ss_pred HHhCCChhHHHHHHHHhHHCCCCCChhhHH-------------HHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHH
Q 003937 120 YNEIGRFKNAIRMFVEMVQDQVLPTQFTVT-------------SVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSL 186 (785)
Q Consensus 120 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~-------------~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 186 (785)
|.+.-++..+-.+...++..+ -+..... -|+..+-+.+++......++.-+..| ..++.++|+|
T Consensus 803 yv~~vnp~~~p~Vvg~lld~d--~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnal 879 (1630)
T 1xi4_A 803 YVQKVNPSRLPVVIGGLLDVD--CSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNAL 879 (1630)
T ss_pred HHhccCCcccchhhhhhhcCC--CCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHH
Confidence 555544444444444443322 1222222 33344445555555666677777777 6789999999
Q ss_pred HHHHHhCCChHHHHHHHhcCC------------CCCcc----------hHHHHHHHHHhcCChHH-HHHHhhhc------
Q 003937 187 LNMYAKVGDEMMAKAVFDGMR------------LKNVS----------SWNVVVSLHIHSGRLDL-ARAQFDQM------ 237 (785)
Q Consensus 187 i~~~~~~g~~~~A~~~~~~m~------------~~~~~----------~~~~li~~~~~~g~~~~-A~~l~~~~------ 237 (785)
...|...++-.+. .+.+=+ .+|+. .-..||...-+++.++. |+-+.++.
T Consensus 880 akiyid~n~npe~--fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~ 957 (1630)
T 1xi4_A 880 AKIYIDSNNNPER--FLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWG 957 (1630)
T ss_pred HHHHhccCCCHHH--HhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHH
Confidence 9999976653332 221111 12221 12234444444444432 33333322
Q ss_pred --C---------------------CCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCC-CCCChhhHHHHHHHHhcccc
Q 003937 238 --I---------------------ERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSS-LKPDKFTLASTLSACANLEK 293 (785)
Q Consensus 238 --~---------------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g-~~p~~~t~~~ll~~~~~~~~ 293 (785)
. ..|+.--...+.+|...|.+.+|++++++.+.... +.-+...-+.++.+..+. +
T Consensus 958 ~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D 1036 (1630)
T 1xi4_A 958 SVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-D 1036 (1630)
T ss_pred HHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-C
Confidence 0 01222234567888999999999999999842211 011122223344444444 4
Q ss_pred hhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003937 294 LKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLR 373 (785)
Q Consensus 294 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 373 (785)
...+.++....- ......+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++..
T Consensus 1037 ~~Rv~eyI~kLd-------~~d~~eIA~Iai~lglyEEAf~IYkKa~~---~~~A~~VLie---~i~nldrAiE~Aervn 1103 (1630)
T 1xi4_A 1037 RTRVMEYINRLD-------NYDAPDIANIAISNELFEEAFAIFRKFDV---NTSAVQVLIE---HIGNLDRAYEFAERCN 1103 (1630)
T ss_pred hhhHHHHHHHhh-------hccHHHHHHHHHhCCCHHHHHHHHHHcCC---HHHHHHHHHH---HHhhHHHHHHHHHhcC
Confidence 454444444332 22245577888899999999999999742 1222333322 7789999999999774
Q ss_pred CCCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHH
Q 003937 374 DRDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNAL 453 (785)
Q Consensus 374 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 453 (785)
+..+|..+..++.+.|++++|++.|.+. -|...|..+..+|.+.|+++++.+.+...++.. ++..+.+.+
T Consensus 1104 --~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~L 1173 (1630)
T 1xi4_A 1104 --EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETEL 1173 (1630)
T ss_pred --CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHH
Confidence 4678999999999999999999999653 466778889999999999999999999888765 444444569
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHH
Q 003937 454 ITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 533 (785)
+..|++.+++++..... ..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|
T Consensus 1174 afaYAKl~rleele~fI----~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1174 IFALAKTNRLAELEEFI----NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HHHHHhhcCHHHHHHHH----hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence 99999999998644443 3447778888999999999999999999985 3799999999999999999
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
.+.+++.. +..+|..+..++...|++..|....... .-++..+..++..|...|.+++|+.++++.+.++|
T Consensus 1241 IEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Ler 1311 (1630)
T 1xi4_A 1241 VDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLER 1311 (1630)
T ss_pred HHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCh
Confidence 99998763 4578888888999999999999887654 34555667899999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhc--CChHHHHHHHH
Q 003937 614 DNSGAYSALCNLYSSC--GKWEDAANIRK 640 (785)
Q Consensus 614 ~~~~~~~~l~~~~~~~--g~~~~a~~~~~ 640 (785)
.+.+.|.-|..+|++. ++..|+.++|.
T Consensus 1312 aH~gmftELaiLyaKy~peklmEhlk~f~ 1340 (1630)
T 1xi4_A 1312 AHMGMFTELAILYSKFKPQKMREHLELFW 1340 (1630)
T ss_pred hHhHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999998888888765 46666666655
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=4.5e-17 Score=171.14 Aligned_cols=304 Identities=13% Similarity=0.059 Sum_probs=179.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHc
Q 003937 315 VGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQN 390 (785)
Q Consensus 315 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 390 (785)
.+..+...|.+.|++++|...|++.....| +..+|..+...+...|++++|...|+.+.+ .+...|..+...|.+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 84 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQ 84 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHc
Confidence 445666777888888888888887655544 567788888888888888888888887653 3567788888888888
Q ss_pred CChhHHHHHHHHHHHcCCCC---CHh-hHHHH------------HHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHH
Q 003937 391 GLNKDAVELFRSMVREGPKP---NNY-TLSAM------------LSVSSSLASLDHGKQIHASALRSGEASSLSVSNALI 454 (785)
Q Consensus 391 g~~~~A~~~~~~m~~~g~~p---~~~-t~~~l------------l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 454 (785)
|++++|+..|++.... .| +.. .+..+ ...+...|+++.|...+..+.+.. +.+...+..+.
T Consensus 85 ~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~ 161 (359)
T 3ieg_A 85 GKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRA 161 (359)
T ss_dssp TCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 8888888888888764 44 222 22222 244555566666666666555543 23445555566
Q ss_pred HHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHH------------H
Q 003937 455 TMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYV------------G 519 (785)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~------------~ 519 (785)
..|...|++++|...|++.... .+...|..+...|...|++++|+..|++..+ ..|+.. ++. .
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~ 239 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIE 239 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHH
Confidence 6666666666666666654321 2455566666666666666666666666655 233322 111 1
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCCCCc-----hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIKPTP-----SHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSAC 592 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 592 (785)
+...+...|++++|...++.+.+. .|+. ..+..+...|.+.|++++|.+.+++. ...| +..+|..+...+
T Consensus 240 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 240 SAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 133455555666666655555441 1221 12333445555555666665555554 2233 344555555555
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY 626 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 626 (785)
...|++++|...++++++++|+++.....+..++
T Consensus 317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 5556666666666666655555555555444443
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.79 E-value=8.1e-18 Score=173.51 Aligned_cols=400 Identities=15% Similarity=0.120 Sum_probs=185.0
Q ss_pred ccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 003937 91 KQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSF 170 (785)
Q Consensus 91 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 170 (785)
+.|++++|.+++++++.|+ +|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..+++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5677888888888886654 7888888888888888888888652 5777888888888889999999998887
Q ss_pred HHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHH
Q 003937 171 VVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIA 250 (785)
Q Consensus 171 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~ 250 (785)
..+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|...|..+ ..|..++.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 7774 45678889999999999999998888864 66679999999999999999999999987 48999999
Q ss_pred HHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChH
Q 003937 251 GYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVE 330 (785)
Q Consensus 251 ~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 330 (785)
++.+.|++++|++.++++ .+..||..++.+|...|+++.|...... +..++.-...++..|.+.|+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHH
Confidence 999999999999999887 3678999999999999999998543332 2233333457889999999999
Q ss_pred HHHHHHHHhCCCCC-chHhHHHHHHHHHh--cCCHHHHHHHHHhcCC--------CCHhHHHHHHHHHHHcCChhHHHHH
Q 003937 331 IAQKIVEQSGISYL-NVIAFTTLLDGYIK--IGDIGPARRIFDSLRD--------RDVVAWTAMLVGYEQNGLNKDAVEL 399 (785)
Q Consensus 331 ~A~~~~~~~~~~~~-~~~~~~~li~~~~~--~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~ 399 (785)
+|.+++++....++ ....|+-+.-.|++ -+++.+..+.|..-.. .+...|..+...|.+.++++.|...
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 99999999655544 56677777766665 4677788888875443 2567899999999999999999864
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCCh
Q 003937 400 FRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQET 479 (785)
Q Consensus 400 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~ 479 (785)
|.+. .|+...-..+.....+..+.+.--+....-+.. .|. ..|-|+......=+...+.++|+....-|=+
T Consensus 305 ---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p~--~l~~ll~~l~~~ld~~r~v~~~~~~~~l~l~ 375 (449)
T 1b89_A 305 ---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLV 375 (449)
T ss_dssp ---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTTTT
T ss_pred ---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CHH--HHHHHHHHHHhccCcHHHHHHHHHcCCcHHH
Confidence 4443 233333333344444445444433333333321 222 2455555555555666666666655433333
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQR 535 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 535 (785)
..|-.- .+..+....-+.+.++.- -.-|-.+...-+.+|-.-....-|.+
T Consensus 376 ~~yl~~----v~~~n~~~vnealn~l~i--eeed~~~lr~si~~~~nfd~~~l~~~ 425 (449)
T 1b89_A 376 KPYLRS----VQNHNNKSVNESLNNLFI--TEEDYQALRTSIDAYDNFDNISLAQR 425 (449)
T ss_dssp HHHHHH----HHTTCCHHHHHHHHHHHH--HTTCHHHHHHHHHHCCCSCHHHHHHH
T ss_pred HHHHHH----HHHhhHHHHHHHHHHHHH--hhhhHHHHHHHHHHhcCcCHHHHHHH
Confidence 322211 112222222222333221 13345555555556655555554444
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.78 E-value=3.9e-16 Score=163.93 Aligned_cols=295 Identities=15% Similarity=0.084 Sum_probs=245.6
Q ss_pred chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 003937 345 NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSV 421 (785)
Q Consensus 345 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a 421 (785)
++..+..+...+.+.|++++|...|+.+.+ .+...|..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 456788899999999999999999998764 467889999999999999999999999998763 2255678888889
Q ss_pred HhccCchHHHHHHHHHHHHhCCC--CchHHHHHH------------HHHHHhcCCHHHHHHHHHhccc--CCChhHHHHH
Q 003937 422 SSSLASLDHGKQIHASALRSGEA--SSLSVSNAL------------ITMYSKAGNINAARRVFNLIHW--RQETVSWTSM 485 (785)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l------------i~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~l 485 (785)
+...|+++.|...+..+.+.... .+...+..+ ...+...|++++|.+.|+++.. +.+...|..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999876421 234444444 5788999999999999998742 2367789999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHH---------
Q 003937 486 IVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFA--------- 554 (785)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~--------- 554 (785)
...|...|++++|+..++++.+. .| +..++..+...+...|++++|...++...+. .|+ ...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHH
Confidence 99999999999999999999984 45 4568889999999999999999999998762 344 23222
Q ss_pred ---HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 555 ---SMVDLLGRAGLLQEAYNFIENM-PLEPD-VV----AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 555 ---~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
.+...+.+.|++++|.+.+++. ...|+ .. .|..+...+...|++++|...++++++.+|+++.++..++.+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 2366789999999999999987 33454 32 345567788999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 003937 626 YSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 626 ~~~~g~~~~a~~~~~~m~~~ 645 (785)
|...|++++|...+++..+.
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999999764
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.75 E-value=5.9e-16 Score=160.53 Aligned_cols=286 Identities=10% Similarity=0.052 Sum_probs=193.0
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHH
Q 003937 310 DATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLV 385 (785)
Q Consensus 310 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~ 385 (785)
+.+..+...+...+...|++++|.++|+++....| +...+..++..+.+.|++++|...|+++.+ .+...|..+..
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGC 98 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 44555566666667777766666666666444333 344455555555555555555555555432 23445555555
Q ss_pred HHHHcC-ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHH
Q 003937 386 GYEQNG-LNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNIN 464 (785)
Q Consensus 386 ~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 464 (785)
.+...| ++++|+..|++.... . +.+...+..+...|...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~-----------------------------------~-~~~~~~~~~l~~~~~~~~~~~ 142 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTL-----------------------------------E-KTYGPAWIAYGHSFAVESEHD 142 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTT-----------------------------------C-TTCTHHHHHHHHHHHHHTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHh-----------------------------------C-CccHHHHHHHHHHHHHccCHH
Confidence 555555 555555555555432 1 223444566777777777777
Q ss_pred HHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 465 AARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 465 ~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
+|...|++... +.+...|..+...|...|++++|++.|++..+. .|+ ..++..+...+...|++++|...++++.
T Consensus 143 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 143 QAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 77777776542 224566777778888888888888888888773 444 4577777778888888888888887776
Q ss_pred hcC-------CCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Q 003937 542 NVH-------KIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIE 612 (785)
Q Consensus 542 ~~~-------~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 612 (785)
+.. ..+.....+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 521 11334667888889999999999999988887 3334 56788889999999999999999999999999
Q ss_pred CCCchhHHHHHHHH-HhcCChH
Q 003937 613 PDNSGAYSALCNLY-SSCGKWE 633 (785)
Q Consensus 613 p~~~~~~~~l~~~~-~~~g~~~ 633 (785)
|+++..+..++.++ ...|+.+
T Consensus 301 p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 301 RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp SCCHHHHHHHHHHHHTTTTC--
T ss_pred CCchHHHHHHHHHHHHHhCchh
Confidence 99999999999888 4555543
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.9e-16 Score=163.26 Aligned_cols=342 Identities=14% Similarity=0.091 Sum_probs=127.1
Q ss_pred CChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHH
Q 003937 225 GRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYI 304 (785)
Q Consensus 225 g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 304 (785)
|++++|.+.++++..| .+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|+++.+...+...
T Consensus 17 ~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 17 GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3344444444444244 37777777777777777777777543 56667777777777777887777777766
Q ss_pred HHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHH
Q 003937 305 IRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAML 384 (785)
Q Consensus 305 ~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li 384 (785)
++. .+++.+.+.|+.+|.++|+++++.++++ .|+..+|+.+++.|...|.+++|...|..+ ..|..++
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA 155 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA 155 (449)
T ss_dssp -----------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence 663 4557788899999999999998887775 356678888889999999999999999877 3688888
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHH
Q 003937 385 VGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNIN 464 (785)
Q Consensus 385 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 464 (785)
.++.+.|++++|++.++++ .+..||..++.+|...|+++.|...... +...+.-...++..|.+.|.++
T Consensus 156 ~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHH
Confidence 8888888888888888877 2667777777777777777777332221 1112222223444444444444
Q ss_pred HHHHHHHhcc--cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 465 AARRVFNLIH--WRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 465 ~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
+|..+++... .+.....|+-|.-.|++ .+.+.+.+..+.|..
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~k---------------------------------y~p~k~~ehl~~~~~--- 268 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSK---------------------------------FKPQKMREHLELFWS--- 268 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHT---------------------------------TCHHHHHHHHHHHST---
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHh---------------------------------cCHHHHHHHHHHHHH---
Confidence 4444444332 11123333333333333 233333333333321
Q ss_pred cCCCCC------CchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 543 VHKIKP------TPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 543 ~~~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
.-.++| +..+|.-++-.|...++++.|...+-+-+ |+..--..+.....+-.+.|.-.++..-.++..|
T Consensus 269 ~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p--- 343 (449)
T 1b89_A 269 RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKP--- 343 (449)
T ss_dssp TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCH---
Confidence 123333 35567777788888888888777554432 2322223333344455555544444444443333
Q ss_pred hhHHHHHHHHHhcCChHHHHHHH
Q 003937 617 GAYSALCNLYSSCGKWEDAANIR 639 (785)
Q Consensus 617 ~~~~~l~~~~~~~g~~~~a~~~~ 639 (785)
...+.|+.++...=+...+.+++
T Consensus 344 ~~l~~ll~~l~~~ld~~r~v~~~ 366 (449)
T 1b89_A 344 LLLNDLLMVLSPRLDHTRAVNYF 366 (449)
T ss_dssp GGHHHHHHHHGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHH
Confidence 23444444444433444333333
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=2.2e-15 Score=152.52 Aligned_cols=271 Identities=9% Similarity=-0.005 Sum_probs=196.4
Q ss_pred HHhcCChHHHHHHHHHhCCCCCch--HhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHHH
Q 003937 323 YAKVGGVEIAQKIVEQSGISYLNV--IAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVELF 400 (785)
Q Consensus 323 y~~~g~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 400 (785)
....|++..|+..+++.....|+. .....+.++|...|++++|...++....++..++..+...+...|+.++|++.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l 88 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL 88 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 445677777777766665555532 344555666666666666666665543344555555666666666666666666
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChh
Q 003937 401 RSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETV 480 (785)
Q Consensus 401 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~ 480 (785)
+++...+..|+. ...+..+...|...|++++|.+.|++ ..+..
T Consensus 89 ~~ll~~~~~P~~----------------------------------~~~~~~la~~~~~~g~~~~Al~~l~~---~~~~~ 131 (291)
T 3mkr_A 89 DREMSRSVDVTN----------------------------------TTFLLMAASIYFYDQNPDAALRTLHQ---GDSLE 131 (291)
T ss_dssp HHHHHSCCCCSC----------------------------------HHHHHHHHHHHHHTTCHHHHHHHHTT---CCSHH
T ss_pred HHHHhcccCCCC----------------------------------HHHHHHHHHHHHHCCCHHHHHHHHhC---CCCHH
Confidence 666655444543 33345566788899999999999988 34788
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHH---HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHH
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITY---VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMV 557 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 557 (785)
.+..++..|.+.|+.++|++.|+++.+. .|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+.
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la 207 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQA 207 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 8999999999999999999999999984 5765421 22334445668999999999999873 456788899999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDL-GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 634 (785)
..|.+.|++++|.+.+++. ...| +..+|..++..+...|+.++ +..+++++++++|+++.+ .+...+.+.+++
T Consensus 208 ~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~ 283 (291)
T 3mkr_A 208 ACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDR 283 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHH
Confidence 9999999999999999987 4556 57789999999999998865 678999999999988754 345666666666
Q ss_pred HHHH
Q 003937 635 AANI 638 (785)
Q Consensus 635 a~~~ 638 (785)
+..-
T Consensus 284 ~~~~ 287 (291)
T 3mkr_A 284 LVLQ 287 (291)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.72 E-value=6.8e-16 Score=162.95 Aligned_cols=258 Identities=13% Similarity=0.024 Sum_probs=191.1
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003937 378 VAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY 457 (785)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 457 (785)
..|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|+++.|...+..+.+.. +.+..++..+...|
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSF 142 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555566666666666666666665542 2234445555555666666666666666665553 33556666777777
Q ss_pred HhcCCHHHHHHHHHhcccC-C-ChhHHHH---------------HHHHHHHcCChHHHHHHHHHHHHCCCCCC---HHHH
Q 003937 458 SKAGNINAARRVFNLIHWR-Q-ETVSWTS---------------MIVALAQHGLGEEAIQLFERMLELGIKPD---HITY 517 (785)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~~-p-~~~~~~~---------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~ 517 (785)
...|++++|.+.|+++... | +...+.. .+..+...|++++|+..|+++.+. .|+ ..++
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~ 220 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL--DPTSIDPDVQ 220 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH--STTSCCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh--CcCcccHHHH
Confidence 7777777777777765422 2 2222211 233344889999999999999984 555 6788
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 003937 518 VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH 595 (785)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 595 (785)
..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 298 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL 298 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 88999999999999999999998762 2334678899999999999999999999987 3445 577899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCC-----------chhHHHHHHHHHhcCChHHHHHHHHH
Q 003937 596 KNLDLGKIAAEKLLLIEPDN-----------SGAYSALCNLYSSCGKWEDAANIRKS 641 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~ 641 (785)
|++++|...+++++++.|++ ..+|..++.+|...|++++|..++++
T Consensus 299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 99999999999999998877 78999999999999999999998764
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.72 E-value=3.5e-14 Score=157.76 Aligned_cols=209 Identities=9% Similarity=0.027 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHh-------cCCHH-------HHHHHHHhccc--CC-ChhHHHHHHHHHHHc
Q 003937 430 HGKQIHASALRSGEASSLSVSNALITMYSK-------AGNIN-------AARRVFNLIHW--RQ-ETVSWTSMIVALAQH 492 (785)
Q Consensus 430 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-------~g~~~-------~A~~~~~~~~~--~p-~~~~~~~li~~~~~~ 492 (785)
.+..+++.++.. .+.+..+|..+...+.+ .|+++ +|..+|++... .| +...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 444455555554 23345555566665554 56665 67777776542 23 456677777777777
Q ss_pred CChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHH-HhhcCCHHH
Q 003937 493 GLGEEAIQLFERMLELGIKPDH--ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDL-LGRAGLLQE 568 (785)
Q Consensus 493 g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~-~~~~g~~~~ 568 (785)
|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|..+|++..+. .|. ...|.....+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence 777777777777777 45543 35666666666777777777777777642 222 2222222222 235677777
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch----hHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 569 AYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG----AYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 569 A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
|.++|++. ...| +...|..++......|+.+.|..+++++++..|.++. .|...+......|+.+.+..+.+++
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77777765 2334 4667777777777777777777777777776654443 5666666667777777777777776
Q ss_pred Hh
Q 003937 643 KY 644 (785)
Q Consensus 643 ~~ 644 (785)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 23
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.71 E-value=6e-15 Score=152.90 Aligned_cols=263 Identities=13% Similarity=0.072 Sum_probs=214.5
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003937 376 DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALIT 455 (785)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 455 (785)
+...+..+...+...|++++|+.+|+++.... +.+...+..+...+...|++++|...+..+.+.. +.+...+..+..
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 44455666677777777777777777776643 2233445556666777778888888877777753 345667788889
Q ss_pred HHHhcC-CHHHHHHHHHhcccC-C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHH
Q 003937 456 MYSKAG-NINAARRVFNLIHWR-Q-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVE 531 (785)
Q Consensus 456 ~y~~~g-~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~ 531 (785)
.|...| ++++|...|++.... | +...|..+...|...|++++|+..|+++.+. .|+ ...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHhhHH
Confidence 999999 999999999987532 3 5778999999999999999999999999984 454 457777888999999999
Q ss_pred HHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCHHH
Q 003937 532 QGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PL----------EPDVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 532 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~ll~~~~~~g~~~~ 600 (785)
+|...++++.+ ..+.+...+..+...|.+.|++++|.+.+++. .. ..+..+|..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999986 23445778899999999999999999999877 11 2346789999999999999999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
|...+++++++.|+++..+..++.+|...|++++|...+++..+
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999998754
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.70 E-value=7.3e-14 Score=153.49 Aligned_cols=321 Identities=9% Similarity=-0.014 Sum_probs=230.3
Q ss_pred ccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChHHHHHHHHHhCCCCCchHhHHHHHHHHHh----cCCH
Q 003937 291 LEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAK----VGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIK----IGDI 362 (785)
Q Consensus 291 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 362 (785)
.++.+.|...+....+.| +...+..|..+|.. .+++++|.+.|++....+ +..++..+...|.. .++.
T Consensus 92 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-RDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCH
Confidence 444455555554444433 33444455556665 566777777776644332 45666666666766 6677
Q ss_pred HHHHHHHHhcCC-CCHhHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc----cCchHHHHH
Q 003937 363 GPARRIFDSLRD-RDVVAWTAMLVGYEQ----NGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSS----LASLDHGKQ 433 (785)
Q Consensus 363 ~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~ 433 (785)
++|...|+...+ .+..++..+...|.. .++.++|+..|++..+.| +...+..+...+.. .++.++|..
T Consensus 168 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~ 244 (490)
T 2xm6_A 168 VMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRV 244 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 888877776544 466677777777777 788888888888877754 34445555555543 678888888
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcccCCChhHHHHHHHHHHHc-----CChHHHHHHHHH
Q 003937 434 IHASALRSGEASSLSVSNALITMYSK----AGNINAARRVFNLIHWRQETVSWTSMIVALAQH-----GLGEEAIQLFER 504 (785)
Q Consensus 434 ~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~ 504 (785)
.+....+.| +...+..|..+|.. .++.++|...|++.....+...+..+...|... ++.++|+..|++
T Consensus 245 ~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 245 LFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 888877664 34556677777877 889999999999887665778888888888887 899999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHhhccC---CHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhh----cCCHHHHHHHHHhCC
Q 003937 505 MLELGIKPDHITYVGVLTACTHGG---LVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGR----AGLLQEAYNFIENMP 577 (785)
Q Consensus 505 m~~~g~~p~~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~ 577 (785)
..+.| +...+..+...+...| ++++|.++|++..+ . .+...+..|..+|.. .++.++|.+.|++.-
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 98864 3455666666666656 78899999998876 2 456778888888888 889999999998873
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCC---CchhHHHHHHHHHh
Q 003937 578 LEPDVVAWGSLLSACRV----HKNLDLGKIAAEKLLLIEPD---NSGAYSALCNLYSS 628 (785)
Q Consensus 578 ~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~ 628 (785)
-..+...+..|...|.. .++.++|...++++.+.+|+ ++.....|..++..
T Consensus 395 ~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 395 EQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred hCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 23467788888888887 89999999999999998853 56666666555543
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=1.4e-13 Score=152.77 Aligned_cols=398 Identities=10% Similarity=0.076 Sum_probs=272.8
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHhhhcCC--C-CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHH
Q 003937 209 KNVSSWNVVVSLHIHSGRLDLARAQFDQMIE--R-DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTL 285 (785)
Q Consensus 209 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll 285 (785)
.+...|..++. +.+.|++++|..+|+++.+ | +...|..++..+.+.|++++|..+|++.+.. .|+...+...+
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p~~~lw~~~~ 86 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VLHIDLWKCYL 86 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CCCHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCChHHHHHHH
Confidence 36778999998 5789999999999999854 3 5567999999999999999999999999432 47766655555
Q ss_pred HHH-hcccchhhHHH----HHHHHHHh-cCCC-CcchHHHHHHHHHh---------cCChHHHHHHHHHhCCCCCc--hH
Q 003937 286 SAC-ANLEKLKLGKQ----IHAYIIRT-EFDA-TGPVGNALISCYAK---------VGGVEIAQKIVEQSGISYLN--VI 347 (785)
Q Consensus 286 ~~~-~~~~~~~~a~~----~~~~~~~~-g~~~-~~~~~~~li~~y~~---------~g~~~~A~~~~~~~~~~~~~--~~ 347 (785)
... ...++.+.+++ +++..++. |..| +..+|...+....+ .|+++.|.++|++....+.+ ..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 422 34566666655 66666554 5544 45677888877665 78899999999997764322 23
Q ss_pred hHHHHHHHH-------------HhcCCHHHHHHHHHh-------cC------CCC--------HhHHHHHHHHHHHc---
Q 003937 348 AFTTLLDGY-------------IKIGDIGPARRIFDS-------LR------DRD--------VVAWTAMLVGYEQN--- 390 (785)
Q Consensus 348 ~~~~li~~~-------------~~~g~~~~A~~~f~~-------~~------~~~--------~~~~~~li~~~~~~--- 390 (785)
.|....... .+.++++.|..++.. +. .|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 444333311 124456677766654 11 111 24566555433332
Q ss_pred -CCh----hHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc-------cCchH-------HHHHHHHHHHHhCCCCchHHHH
Q 003937 391 -GLN----KDAVELFRSMVREGPKPNNYTLSAMLSVSSS-------LASLD-------HGKQIHASALRSGEASSLSVSN 451 (785)
Q Consensus 391 -g~~----~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~g~~~~~~~~~ 451 (785)
++. ++|+.+|++.+... +-+...|......+.+ .|+++ .|..++...++.-.+.+..++.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 222 36777888877642 2234455555555553 67776 7888888877633455678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcccC-CC-h-hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-hhc
Q 003937 452 ALITMYSKAGNINAARRVFNLIHWR-QE-T-VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTA-CTH 526 (785)
Q Consensus 452 ~li~~y~~~g~~~~A~~~~~~~~~~-p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a-~~~ 526 (785)
.++..+.+.|++++|..+|++.... |+ . ..|..++..+.+.|+.++|.++|++..+. .|+ ...|...... +..
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~ 403 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYC 403 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHH
Confidence 8888888888999998888876433 33 2 47888888888888888899888888874 343 2233322222 235
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHH
Q 003937 527 GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM----PLEPD--VVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~--~~~~~~ll~~~~~~g~~~~ 600 (785)
.|++++|..+|+...+.. +.+...|..+++.+.+.|+.++|..+|++. +..|+ ...|...+.....+|+.+.
T Consensus 404 ~~~~~~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~ 481 (530)
T 2ooe_A 404 SKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS 481 (530)
T ss_dssp TCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH
T ss_pred cCChhHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 788888988888877622 234677888888888888998898888887 22332 4478888888888888888
Q ss_pred HHHHHHHHHhhCCCC
Q 003937 601 GKIAAEKLLLIEPDN 615 (785)
Q Consensus 601 a~~~~~~~~~~~p~~ 615 (785)
+..+.+++.+..|++
T Consensus 482 ~~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 482 ILKVEKRRFTAFREE 496 (530)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHCchh
Confidence 888888888888843
No 26
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=3.4e-15 Score=157.58 Aligned_cols=272 Identities=14% Similarity=0.068 Sum_probs=163.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHH
Q 003937 314 PVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQ 389 (785)
Q Consensus 314 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 389 (785)
..+..+...|.+.|++++|...|+++....| +..+|..+...|.+.|++++|...|+.+.+ .+..+|..+...|..
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 144 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 144 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3445566667777777777777777555444 566777777888888888888888876643 467788888888999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003937 390 NGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRV 469 (785)
Q Consensus 390 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 469 (785)
.|++++|+..|+++.... |+.......+ +.... ...+ ......+...+ ..|++++|...
T Consensus 145 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~------~~~~~-----------~~~~-~~~~~~~~~~~-~~~~~~~A~~~ 203 (368)
T 1fch_A 145 ESLQRQACEILRDWLRYT--PAYAHLVTPA------EEGAG-----------GAGL-GPSKRILGSLL-SDSLFLEVKEL 203 (368)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTGGGCC---------------------------------CTTHHHH-HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--cCcHHHHHHH------HHHhh-----------hhcc-cHHHHHHHHHh-hcccHHHHHHH
Confidence 999999999999888753 3322211100 00000 0000 00001112222 55666666666
Q ss_pred HHhcc-cCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcC
Q 003937 470 FNLIH-WRQ---ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVH 544 (785)
Q Consensus 470 ~~~~~-~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 544 (785)
|+++. ..| +...|..+...|...|++++|+..|+++.+. .|+ ..++..+...+...|++++|...++++.+.
T Consensus 204 ~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~- 280 (368)
T 1fch_A 204 FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL- 280 (368)
T ss_dssp HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 66543 112 3455666666666666666666666666652 343 346666666666666666666666666541
Q ss_pred CCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 545 KIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP------------DVVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 545 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
.+.+...+..+...|.+.|++++|.+.++++ ...| ...+|..+..++...|+.++|..++++.++
T Consensus 281 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 281 -QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 1223555666666666667776666666655 1111 156777777777788888877777765544
No 27
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.68 E-value=3e-13 Score=148.55 Aligned_cols=338 Identities=14% Similarity=0.034 Sum_probs=275.0
Q ss_pred ccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCChHHHHHHHHHhCCCCCchHhHHHHHHHHHh----cCCH
Q 003937 291 LEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAK----VGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIK----IGDI 362 (785)
Q Consensus 291 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~ 362 (785)
.++++.|...+....+.| +...+..|...|.. .++.++|.+.|++....+ +..++..|...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-LPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCH
Confidence 445555555555555442 34456677788888 899999999999865543 67788889999998 8899
Q ss_pred HHHHHHHHhcCCC-CHhHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc----cCchHHHHH
Q 003937 363 GPARRIFDSLRDR-DVVAWTAMLVGYEQ----NGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSS----LASLDHGKQ 433 (785)
Q Consensus 363 ~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~ 433 (785)
++|...|+...+. +...+..+...|.. .++.++|++.|++..+.| +...+..+-..+.. .++.++|..
T Consensus 132 ~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 132 AESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 9999999987654 67788888888887 789999999999998875 55666666666666 789999999
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcccCCChhHHHHHHHHHHH----cCChHHHHHHHHHH
Q 003937 434 IHASALRSGEASSLSVSNALITMYSK----AGNINAARRVFNLIHWRQETVSWTSMIVALAQ----HGLGEEAIQLFERM 505 (785)
Q Consensus 434 ~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m 505 (785)
.+....+.| +......|..+|.. .+++++|...|++.....+...+..+...|.. .++.++|++.|++.
T Consensus 209 ~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a 285 (490)
T 2xm6_A 209 WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKS 285 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence 999998876 55677788888886 89999999999988766688888888888888 89999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHhhcc-----CCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcC---CHHHHHHHHHhCC
Q 003937 506 LELGIKPDHITYVGVLTACTHG-----GLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAG---LLQEAYNFIENMP 577 (785)
Q Consensus 506 ~~~g~~p~~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~ 577 (785)
.+.| +...+..+...+... +++++|..++++..+ . .+...+..|..+|.+.| +.++|.++|++.-
T Consensus 286 ~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~ 358 (490)
T 2xm6_A 286 AEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-Q---GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAA 358 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-c---CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 8764 445666677777766 899999999999886 2 24566777888887767 8899999999883
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 003937 578 LEPDVVAWGSLLSACRV----HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS----CGKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 578 ~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~g~ 647 (785)
-..+...+..|...|.. .++.++|...++++.+.. ++..+..|+.+|.. .+++++|..++++..+.|.
T Consensus 359 ~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 359 AKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 23578888999988888 899999999999998864 57889999999998 8999999999999988764
No 28
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=6.2e-17 Score=179.67 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=98.0
Q ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc------cCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHH
Q 003937 443 EASSLSVSNALITMYSKAGNINAARRVFNLIH------WRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHIT 516 (785)
Q Consensus 443 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 516 (785)
...-..+||+||++|+++|++++|.++|++|. ..||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34445677888888888888888888886653 247888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhccCC-HHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC
Q 003937 517 YVGVLTACTHGGL-VEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM 576 (785)
Q Consensus 517 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 576 (785)
|+++|.++++.|. .++|.++|++|.+ .|+.||..+|++++....+.+-++...++..++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 8888888887776 4677788888876 678888888888777776665555554443333
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.66 E-value=2.1e-15 Score=159.07 Aligned_cols=258 Identities=10% Similarity=-0.016 Sum_probs=186.9
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003937 378 VAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY 457 (785)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 457 (785)
..|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...+..+++.. +.+...+..+...|
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345556666666666666666666665542 2234455555666666666666666666666553 33456677777888
Q ss_pred HhcCCHHHHHHHHHhcccC-CC-----------hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 003937 458 SKAGNINAARRVFNLIHWR-QE-----------TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP---DHITYVGVLT 522 (785)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~~-p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~ll~ 522 (785)
.+.|++++|...|+++... |+ ...+..+...+...|++++|+..|+++.+. .| +..++..+..
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHHH
Confidence 8888888888888776421 11 223345577888999999999999999984 45 4678888999
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 600 (785)
.+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999998762 2345778999999999999999999999887 4455 47889999999999999999
Q ss_pred HHHHHHHHHhhCCC------------CchhHHHHHHHHHhcCChHHHHHHHHH
Q 003937 601 GKIAAEKLLLIEPD------------NSGAYSALCNLYSSCGKWEDAANIRKS 641 (785)
Q Consensus 601 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 641 (785)
|...+++++++.|+ +...+..|..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998876 367899999999999999998877654
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.65 E-value=4.1e-15 Score=156.81 Aligned_cols=232 Identities=11% Similarity=0.025 Sum_probs=195.6
Q ss_pred CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHH
Q 003937 411 NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVA 488 (785)
Q Consensus 411 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~ 488 (785)
+...+......+.+.|++++|...+..+++.. +.+...+..+...|.+.|++++|...|++... +.+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788889999999999999999999875 45688899999999999999999999998742 2367899999999
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHH-HH----------HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHH
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPDHI-TY----------VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMV 557 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~----------~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 557 (785)
|...|++++|+..|+++.+ +.|+.. .+ ..+...+...|++++|..+++++.+...-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999998 455543 22 3347788999999999999999987432223678899999
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHH
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 635 (785)
..|.+.|++++|.+.++++ ...| +..+|..+...+...|++++|+..+++++++.|+++.++..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3445 5889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 003937 636 ANIRKSMKYV 645 (785)
Q Consensus 636 ~~~~~~m~~~ 645 (785)
...++++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999754
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=1e-16 Score=177.88 Aligned_cols=150 Identities=11% Similarity=0.131 Sum_probs=105.1
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003937 377 VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITM 456 (785)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 456 (785)
..+||++|.+|++.|+.++|.++|.+|.+. .+.|+.||+.+||+||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m--------------------------------~~kG~~PdvvTYNtLI~G 174 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ--------------------------------RQKRKLLTLDMYNAVMLG 174 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHS--------------------------------HHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------------------------------hhcCCCCCHhHHHHHHHH
Confidence 357777777777777777777777666532 122344555555667777
Q ss_pred HHhcCCHHHHHHHHHhcc---cCCChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHH
Q 003937 457 YSKAGNINAARRVFNLIH---WRQETVSWTSMIVALAQHGLG-EEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQ 532 (785)
Q Consensus 457 y~~~g~~~~A~~~~~~~~---~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~ 532 (785)
|++.|++++|.++|++|. .+||++|||+||.++++.|+. ++|.++|++|.+.|+.||.+||++++.++.+.+-++.
T Consensus 175 lck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~ 254 (1134)
T 3spa_A 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254 (1134)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH
Confidence 777777777777777775 337888888888888988874 7889999999999999999999999877766544333
Q ss_pred HHHHHHHhhhcCCCCCC------chhHHHHHHHHhhcC
Q 003937 533 GQRYYNMMKNVHKIKPT------PSHFASMVDLLGRAG 564 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p~------~~~~~~li~~~~~~g 564 (785)
.+++.. ++.|+ +.+..-|.+.|.+.+
T Consensus 255 ----Vrkv~P--~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 255 ----VHKVKP--TFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp ----HGGGCC--CCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred ----HHHhCc--ccCCCCCCcccccchHHHHHHHccCC
Confidence 344432 34443 455566778888766
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.64 E-value=1.5e-14 Score=146.45 Aligned_cols=193 Identities=10% Similarity=0.056 Sum_probs=159.8
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhccc---CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 003937 444 ASSLSVSNALITMYSKAGNINAARRVFNLIHW---RQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVG 519 (785)
Q Consensus 444 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 519 (785)
+|+...+..+...|...|+.++|.+.++++.. .| +...+..+...|.+.|++++|++.|++ ..+...+..
T Consensus 62 ~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~ 135 (291)
T 3mkr_A 62 APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAM 135 (291)
T ss_dssp CHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHH
T ss_pred ChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHH
Confidence 34455567788889999999999999998642 24 455677777899999999999999987 456678888
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhH---HHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHh
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHF---ASMVDLLGRAGLLQEAYNFIENM-P-LEPDVVAWGSLLSACRV 594 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~ll~~~~~ 594 (785)
+...+.+.|++++|.+.++.+.+. .|+.... .+++..+...|++++|..+|+++ . .+.+...|+.+..++..
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999863 4664321 23445555669999999999998 2 23468899999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH-HHHHHHHHHhC
Q 003937 595 HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED-AANIRKSMKYV 645 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 645 (785)
.|++++|+..++++++.+|+++.++..++.++...|++++ +.++++++.+.
T Consensus 213 ~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999987 56888888764
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.63 E-value=2.7e-14 Score=147.66 Aligned_cols=257 Identities=11% Similarity=0.033 Sum_probs=180.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 003937 347 IAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSS 423 (785)
Q Consensus 347 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 423 (785)
..|..+...+...|++++|...|+++.+ .+...|..+...+.+.|++++|+..|+++.+
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------------------ 83 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARM------------------ 83 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------------------
Confidence 3445555555555555555555555432 2344455555555555555555555555544
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-C-ChhHHHHH--------------HH
Q 003937 424 SLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-Q-ETVSWTSM--------------IV 487 (785)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p-~~~~~~~l--------------i~ 487 (785)
.. +.+...+..+...|...|++++|.+.|+++... | +...+..+ ..
T Consensus 84 -----------------~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (327)
T 3cv0_A 84 -----------------LD-PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSED 145 (327)
T ss_dssp -----------------HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------
T ss_pred -----------------cC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHh
Confidence 32 223445556666667777777777777665322 2 22223222 22
Q ss_pred -HHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCH
Q 003937 488 -ALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLL 566 (785)
Q Consensus 488 -~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~ 566 (785)
.+...|++++|+..++++.+.. +.+..++..+...+...|++++|..+++++.+. .+.+...+..+...|.+.|++
T Consensus 146 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 146 FFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRP 222 (327)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCH
Confidence 3667788999999999998842 235568888888999999999999999988762 234467888999999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------------CchhHHHHHHHHHhcCCh
Q 003937 567 QEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD------------NSGAYSALCNLYSSCGKW 632 (785)
Q Consensus 567 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~ 632 (785)
++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+ ++..+..++.+|...|++
T Consensus 223 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 302 (327)
T 3cv0_A 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP 302 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence 9999999887 3344 5778999999999999999999999999999998 688999999999999999
Q ss_pred HHHHHHHHHH
Q 003937 633 EDAANIRKSM 642 (785)
Q Consensus 633 ~~a~~~~~~m 642 (785)
++|..++++.
T Consensus 303 ~~A~~~~~~~ 312 (327)
T 3cv0_A 303 DLVELTYAQN 312 (327)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 34
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=2.6e-13 Score=148.51 Aligned_cols=363 Identities=12% Similarity=0.040 Sum_probs=206.9
Q ss_pred cccHHHHHHHHhhCCCchHHHHHHHHhhhc----CC--CCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcch
Q 003937 242 VVTWNSMIAGYSQNGYDFEALGMFANMLKD----SS--LKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPV 315 (785)
Q Consensus 242 ~~~~~~li~~~~~~g~~~~A~~l~~~ml~~----~g--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 315 (785)
...||.|...+...|++++|++.|++.+.- .+ ..|+ ...+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~----------------------------------~~~~ 96 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR----------------------------------SLVT 96 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT----------------------------------THHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH----------------------------------HHHH
Confidence 456777878888888888888888776321 00 1111 1123
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhCC-------C-CC-chHhHHHHHHHHHhc--CCHHHHHHHHHhcCC--C-CHhHHH
Q 003937 316 GNALISCYAKVGGVEIAQKIVEQSGI-------S-YL-NVIAFTTLLDGYIKI--GDIGPARRIFDSLRD--R-DVVAWT 381 (785)
Q Consensus 316 ~~~li~~y~~~g~~~~A~~~~~~~~~-------~-~~-~~~~~~~li~~~~~~--g~~~~A~~~f~~~~~--~-~~~~~~ 381 (785)
++.+...|...|++++|...+++... . .+ ...++..+..++.+. +++++|...|++..+ | ++..+.
T Consensus 97 ~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~ 176 (472)
T 4g1t_A 97 WGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTS 176 (472)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 44444555555555555555443211 0 11 233444444444433 356677777766542 2 344444
Q ss_pred HHHHH---HHHcCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHh----ccCchHHHHHHHHHHHHhCCCCchHHHHHH
Q 003937 382 AMLVG---YEQNGLNKDAVELFRSMVREGPKPN-NYTLSAMLSVSS----SLASLDHGKQIHASALRSGEASSLSVSNAL 453 (785)
Q Consensus 382 ~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~----~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 453 (785)
.+... +...++.++|++.|++..+. .|+ ...+..+...+. ..++.+.|.+.+....... +.+..++..+
T Consensus 177 ~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~l 253 (472)
T 4g1t_A 177 GLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSA 253 (472)
T ss_dssp HHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHH
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHH
Confidence 44333 33456667777777776654 333 333333333332 3456677777777776653 3455666777
Q ss_pred HHHHHhcCCHHHHHHHHHhcc-cCC-ChhHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHCCCCC
Q 003937 454 ITMYSKAGNINAARRVFNLIH-WRQ-ETVSWTSMIVALAQ-------------------HGLGEEAIQLFERMLELGIKP 512 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~p 512 (785)
...|.+.|++++|...|++.. ..| +..+|..+...|.. .+..++|+..|++..+ ..|
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~ 331 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--AND 331 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCC
Confidence 788888888888888887653 223 44556555554432 2235678888888877 455
Q ss_pred CH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCch----hHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCHHHH
Q 003937 513 DH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPS----HFASMVD-LLGRAGLLQEAYNFIENM-PLEPDVVAW 585 (785)
Q Consensus 513 ~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~ 585 (785)
+. .++..+...+...|++++|...|++..+ +.|+.. .+..+.. .+...|+.++|++.+++. .+.|+...+
T Consensus 332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~ 408 (472)
T 4g1t_A 332 NLFRVCSILASLHALADQYEEAEYYFQKEFS---KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408 (472)
T ss_dssp TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH---SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred chhhhhhhHHHHHHHhccHHHHHHHHHHHHh---cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH
Confidence 54 4788888899999999999999998875 233322 2223332 234678999999998876 567775544
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeE
Q 003937 586 GSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSW 655 (785)
Q Consensus 586 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~ 655 (785)
... .+.+..++++.++.+|+++.+|..|+.+|...|++++|.+.+++..+.|-......+|
T Consensus 409 ~~~---------~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 409 EKM---------KDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHH---------HHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHH---------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 333 2445677888889999999999999999999999999999999998766543333333
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.60 E-value=1.6e-13 Score=141.89 Aligned_cols=223 Identities=13% Similarity=0.100 Sum_probs=134.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHH
Q 003937 314 PVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQ 389 (785)
Q Consensus 314 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 389 (785)
..+..+...+...|++++|..+|+++....| +..+|..+...+.+.|++++|...|+++.+ .+..+|..+...|..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 3455667778888888888888888655544 677888888888889999999998887753 467788889999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHH--------------HH--HhccCchHHHHHHHHHHHHhCCCCchHHHHHH
Q 003937 390 NGLNKDAVELFRSMVREGPKPNNYTLSAML--------------SV--SSSLASLDHGKQIHASALRSGEASSLSVSNAL 453 (785)
Q Consensus 390 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll--------------~a--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 453 (785)
.|++++|+..|+++... .|+.......+ .. +...|++++|...+..+.+.. +.+..++..+
T Consensus 102 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 102 EHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp TTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 99999999999999875 33332222221 21 444555555555555555443 2234444555
Q ss_pred HHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCH
Q 003937 454 ITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLV 530 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~ 530 (785)
...|.+.|++++|.+.|++... +.+...|..+...|...|++++|+..|+++.+. .|+ ..++..+..++...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI--NPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhccH
Confidence 5555555555555555554321 113444555555555555555555555555442 222 33444444455555555
Q ss_pred HHHHHHHHHhh
Q 003937 531 EQGQRYYNMMK 541 (785)
Q Consensus 531 ~~a~~~~~~m~ 541 (785)
++|...++++.
T Consensus 257 ~~A~~~~~~a~ 267 (327)
T 3cv0_A 257 DLAAKQLVRAI 267 (327)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.55 E-value=1.3e-12 Score=142.82 Aligned_cols=381 Identities=12% Similarity=-0.014 Sum_probs=227.1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHhhhcC-----------C-CCcccHHHHHHHHhhCCCchHHHHHHHHhhhc---C--C
Q 003937 211 VSSWNVVVSLHIHSGRLDLARAQFDQMI-----------E-RDVVTWNSMIAGYSQNGYDFEALGMFANMLKD---S--S 273 (785)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~A~~l~~~~~-----------~-~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~---~--g 273 (785)
...||.|...+...|++++|++.|++.. . ...++|+.+...|...|++++|...+++.+.- . .
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 5679999999999999999999998752 1 24568999999999999999999999887431 1 1
Q ss_pred CCCC-hhhHHHHHHHHh--cccchhhHHHHHHHHHHhcCCCCcchHHHHHHH---HHhcCChHHHHHHHHHhCCCCC-ch
Q 003937 274 LKPD-KFTLASTLSACA--NLEKLKLGKQIHAYIIRTEFDATGPVGNALISC---YAKVGGVEIAQKIVEQSGISYL-NV 346 (785)
Q Consensus 274 ~~p~-~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~---y~~~g~~~~A~~~~~~~~~~~~-~~ 346 (785)
..++ ..++...-.++. ..++++.|...|+.+++.. +.+...+..+... +...++.++|.+.+++.....| +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1222 233433333333 3457888999998888764 2233444444444 3456777788888877554444 55
Q ss_pred HhHHHHHHHHHh----cCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHh-hHHHH
Q 003937 347 IAFTTLLDGYIK----IGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNY-TLSAM 418 (785)
Q Consensus 347 ~~~~~li~~~~~----~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~l 418 (785)
.++..+...+.. .|+.++|...++.... .+...|..+...|.+.|++++|+..|++..+. .|+.. ++..+
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHH
Confidence 666666555544 4567788888876543 45677888888888888888888888888764 45433 33333
Q ss_pred HHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcc--cCCChhHHHHHHHHHHHcCChH
Q 003937 419 LSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIH--WRQETVSWTSMIVALAQHGLGE 496 (785)
Q Consensus 419 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~ 496 (785)
...+...+. .. .... . ..........+..+.|...|+... .+.+..+|..+...|...|+++
T Consensus 288 g~~y~~~~~-----~~----~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 288 GCCYRAKVF-----QV----MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHHHHHHH-----HH----HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHH-----Hh----hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHH
Confidence 222211100 00 0000 0 001111112234577788887653 2235678899999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHH-HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHH
Q 003937 497 EAIQLFERMLELGIKPDHI--TYVGVLT-ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFI 573 (785)
Q Consensus 497 ~A~~~~~~m~~~g~~p~~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 573 (785)
+|++.|++..+....|... .+..+.. .....|+.++|...|.+..+ +.|+........ +.+.+++
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~ 419 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHH
Confidence 9999999999854333221 2333332 34578999999999998875 456543332222 2333444
Q ss_pred HhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 574 ENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 574 ~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
++. ...| +..+|..|...+...|+.++|+..+++++++.|.+|.+..-+
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 333 2244 577899999999999999999999999999998877665544
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=3.3e-13 Score=130.25 Aligned_cols=195 Identities=16% Similarity=0.060 Sum_probs=156.7
Q ss_pred CCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 003937 444 ASSLSVSNALITMYSKAGNINAARRVFNLIHW-R-QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGV 520 (785)
Q Consensus 444 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 520 (785)
+++...+..+...+.+.|++++|...|++... . .+...|..+...+.+.|++++|+..|++..+ +.|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 45667778888999999999999999998643 2 3677899999999999999999999999998 56765 588888
Q ss_pred HHHhhcc-----------CCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHH
Q 003937 521 LTACTHG-----------GLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVVAWGS 587 (785)
Q Consensus 521 l~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~ 587 (785)
..++... |++++|...+++..+ +.|+ ...+..+...|...|++++|.+.|++. .+..+...|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER---VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 999999999999886 3454 677888999999999999999999987 22267889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 588 LLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 588 ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
+...+...|++++|+..++++++++|+++..+..++.+|...|++++|...+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999887653
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=8.4e-13 Score=131.12 Aligned_cols=220 Identities=11% Similarity=0.001 Sum_probs=161.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003937 378 VAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY 457 (785)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 457 (785)
..|..+...+...|++++|+..|++..+.. ++ ...+..+...|
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~-----------------------------------~~~~~~~~~~~ 48 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KD-----------------------------------ITYLNNRAAAE 48 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CC-----------------------------------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--cc-----------------------------------HHHHHHHHHHH
Confidence 345556666666666666666666665543 33 34445556666
Q ss_pred HhcCCHHHHHHHHHhcccC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC
Q 003937 458 SKAGNINAARRVFNLIHWR-----QE----TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGG 528 (785)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~~-----p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g 528 (785)
...|++++|...|++.... |+ ...|..+...|...|++++|+..|++..+ +.|+.. .+...|
T Consensus 49 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~ 119 (258)
T 3uq3_A 49 YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLR 119 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHH
T ss_pred HHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHh
Confidence 6666666666666654311 11 46677788888888888888888888887 456533 345567
Q ss_pred CHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003937 529 LVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAE 606 (785)
Q Consensus 529 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 606 (785)
++++|...++.+.. ..+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|++++|...++
T Consensus 120 ~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 120 NAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 78888888888775 22233566778888888889999998888887 3334 57788889999999999999999999
Q ss_pred HHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 607 KLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 607 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
++++..|+++.++..++.+|...|++++|...+++..+.
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988653
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.50 E-value=1.4e-12 Score=129.52 Aligned_cols=237 Identities=10% Similarity=0.029 Sum_probs=175.5
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHhcCC--CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCCHhhHHHHHHH
Q 003937 346 VIAFTTLLDGYIKIGDIGPARRIFDSLRD--RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGP--KPNNYTLSAMLSV 421 (785)
Q Consensus 346 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~a 421 (785)
...|..+...+...|++++|...|+...+ .+...|..+...|...|++++|+..|++...... .|+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------- 76 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK-------- 76 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH--------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH--------
Confidence 56789999999999999999999987643 6778899999999999999999999999876321 11110
Q ss_pred HhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-CCChhHHHHHHHHHHHcCChHHHHH
Q 003937 422 SSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW-RQETVSWTSMIVALAQHGLGEEAIQ 500 (785)
Q Consensus 422 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~ 500 (785)
....++..+...|.+.|++++|...|++... .|+. ..+...|++++|+.
T Consensus 77 -----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~ 126 (258)
T 3uq3_A 77 -----------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELK 126 (258)
T ss_dssp -----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHH
Confidence 0123445666677777777777777776542 2332 34555677888888
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 003937 501 LFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PL 578 (785)
Q Consensus 501 ~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 578 (785)
.++++.. ..|+. ..+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.+++. ..
T Consensus 127 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 127 KAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888877 45544 46777777888888888888888887752 2334667788888888888888888888877 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCchhHHHHHH
Q 003937 579 EP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIE------PDNSGAYSALCN 624 (785)
Q Consensus 579 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~ 624 (785)
.| +..+|..+...+...|+.++|...+++++++. |++...+..+..
T Consensus 203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 44 47788888888999999999999999999988 766655554443
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.48 E-value=2.5e-12 Score=129.16 Aligned_cols=241 Identities=11% Similarity=-0.074 Sum_probs=176.4
Q ss_pred cCChhHHHHHHHHHHHcCCC--C-CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHH
Q 003937 390 NGLNKDAVELFRSMVREGPK--P-NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAA 466 (785)
Q Consensus 390 ~g~~~~A~~~~~~m~~~g~~--p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 466 (785)
.|++++|+..|+++.+.... | +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 35566666666666654211 1 23445555556666666666666666666653 33566778888889999999999
Q ss_pred HHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcC
Q 003937 467 RRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVH 544 (785)
Q Consensus 467 ~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 544 (785)
.+.|++... +.+...|..+...|...|++++|+..|+++.+ ..|+.......+..+...|++++|...++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 999987642 23678899999999999999999999999998 5676665555556667779999999999877652
Q ss_pred CCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 545 KIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 545 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
.+++...+ .++..+...++.++|.+.+++. ...|+ ..+|..+...+...|++++|...++++++++|++...
T Consensus 174 -~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 -SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp -SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred -CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 33444444 4777888888899999998887 33332 5688889999999999999999999999999977554
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 003937 619 YSALCNLYSSCGKWEDAANIR 639 (785)
Q Consensus 619 ~~~l~~~~~~~g~~~~a~~~~ 639 (785)
+ ..++...|++++|.+.+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 66778889999987765
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.45 E-value=1.8e-11 Score=132.35 Aligned_cols=237 Identities=8% Similarity=0.045 Sum_probs=135.7
Q ss_pred CHHHHHHHHHhcCCCCHhHHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHH
Q 003937 361 DIGPARRIFDSLRDRDVVAWTAMLVGYEQNG---LNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHAS 437 (785)
Q Consensus 361 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 437 (785)
..+++..++......++..+..+...|.+.| +.++|+..|++....|.. +...+
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~---------------------- 216 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRV---------------------- 216 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHH----------------------
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHH----------------------
Confidence 4455666666666666667777877888888 777888888877776522 22221
Q ss_pred HHHhCCCCchHHHHHHHHHHHhc----CCHHHHHHHHHhcccCCChhHHHHHHHH-H--HHcCChHHHHHHHHHHHHCCC
Q 003937 438 ALRSGEASSLSVSNALITMYSKA----GNINAARRVFNLIHWRQETVSWTSMIVA-L--AQHGLGEEAIQLFERMLELGI 510 (785)
Q Consensus 438 ~~~~g~~~~~~~~~~li~~y~~~----g~~~~A~~~~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~ 510 (785)
..|..+|... +++++|.+.|++.. +.+...+..|... | ...++.++|++.|++..+.|
T Consensus 217 -------------~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g- 281 (452)
T 3e4b_A 217 -------------DSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD- 281 (452)
T ss_dssp -------------HHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-
T ss_pred -------------HHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-
Confidence 2233333322 46666666666655 4355566666555 3 34667777777777776655
Q ss_pred CCCHHHHHHHHHHhhccC-----CHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhh----cCCHHHHHHHHHhCCCCCC
Q 003937 511 KPDHITYVGVLTACTHGG-----LVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGR----AGLLQEAYNFIENMPLEPD 581 (785)
Q Consensus 511 ~p~~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~ 581 (785)
+...+..+...|. .| ++++|..+|++.. .-+...+..|..+|.. ..+.++|.++|++.--.-+
T Consensus 282 --~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 282 --QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp --CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred --CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 4444445555444 33 6777777776553 2344555556655554 2377777777777622223
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 582 VVAWGSLLSACRV----HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 582 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
......|...|.. ..+.++|...++++.+..+.+.......+......++.++|..+.++..
T Consensus 354 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 354 NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4444455554442 4577888888888777654332222222222223345566666665543
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=3.5e-12 Score=127.95 Aligned_cols=246 Identities=11% Similarity=0.012 Sum_probs=128.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 003937 347 IAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSS 423 (785)
Q Consensus 347 ~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~ 423 (785)
..+......+.+.|++++|...|+...+ .+...|..+...|.+.|++++|+..|++....+ ++...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~--------- 72 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKA--------- 72 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTC---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhH---------
Confidence 3445556666666777777776666543 234466666666666666666666666666532 12111
Q ss_pred ccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHH
Q 003937 424 SLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQL 501 (785)
Q Consensus 424 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~ 501 (785)
....+..+...|...|++++|.+.|++... +.+...|..+...|...|++++|+..
T Consensus 73 ----------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 73 ----------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 111233444444445555555555544321 11334455555555555555555555
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCC---HHHHHHHHHhC
Q 003937 502 FERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGL---LQEAYNFIENM 576 (785)
Q Consensus 502 ~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~---~~~A~~~~~~~ 576 (785)
|++..+. .|+. ..+..+...+...+++++|...|+++.+. .|+ ...+..+...+...|+ .++|...+++.
T Consensus 131 ~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 131 MEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 5555442 3322 23333331222333555555555555431 222 3344444444444444 44444444333
Q ss_pred ----CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 003937 577 ----PLEPD------VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCG 630 (785)
Q Consensus 577 ----~~~p~------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 630 (785)
...|+ ..+|..+...+...|++++|...++++++++|+++.+...+..+....+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2467778888889999999999999999999988887777766654443
No 43
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.43 E-value=3.8e-10 Score=125.95 Aligned_cols=217 Identities=7% Similarity=-0.030 Sum_probs=161.8
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHH-HHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc
Q 003937 395 DAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGK-QIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI 473 (785)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 473 (785)
.+..+|++.+.. ..-+...|.....-+...|+.+.|. .++...+.. ++.+..++-.++..+-+.|+++.|.++|+.+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 455677777664 2224555666666667778888886 999988864 4566777788888899999999999999876
Q ss_pred ccC------------CC------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHhhc-c
Q 003937 474 HWR------------QE------------TVSWTSMIVALAQHGLGEEAIQLFERMLEL-GIKPDHITYVGVLTACTH-G 527 (785)
Q Consensus 474 ~~~------------p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~a~~~-~ 527 (785)
... |+ ...|...+....+.|..+.|..+|.+.++. +. +....|......-.+ .
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhC
Confidence 431 32 236888888888889999999999999885 21 122233322222223 3
Q ss_pred CCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHH
Q 003937 528 GLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP----DVVAWGSLLSACRVHKNLDLGK 602 (785)
Q Consensus 528 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~ll~~~~~~g~~~~a~ 602 (785)
++.+.|..+|+...+. .+.+...+...++.....|+.+.|..+|++. ...| ....|...+.--..+|+.+.+.
T Consensus 484 ~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp SCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred CCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5589999999998873 3445666778899999999999999999997 2233 2468999999889999999999
Q ss_pred HHHHHHHhhCCCCc
Q 003937 603 IAAEKLLLIEPDNS 616 (785)
Q Consensus 603 ~~~~~~~~~~p~~~ 616 (785)
.+.+++.+..|+++
T Consensus 562 ~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 562 TLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHSTTCC
T ss_pred HHHHHHHHhCCCCc
Confidence 99999999999765
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.41 E-value=8.1e-11 Score=118.06 Aligned_cols=223 Identities=11% Similarity=-0.041 Sum_probs=105.1
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc----cCchHHHHHHHHHHHHhCCCCchHHHHH
Q 003937 377 VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSS----LASLDHGKQIHASALRSGEASSLSVSNA 452 (785)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 452 (785)
..++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|...+....+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 3445555555555666666666666555421 22223333333333 444444444444444333 3334444
Q ss_pred HHHHHHh----cCCHHHHHHHHHhcccCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh
Q 003937 453 LITMYSK----AGNINAARRVFNLIHWRQETVSWTSMIVALAQ----HGLGEEAIQLFERMLELGIKPDHITYVGVLTAC 524 (785)
Q Consensus 453 li~~y~~----~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~ 524 (785)
+..+|.. .|++++|...|++.....+..++..+...|.. .+++++|++.|++..+.+ +...+..+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 5555555 55555555555554433355555555555555 555666666665555543 233344444444
Q ss_pred hc----cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-
Q 003937 525 TH----GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGR----AGLLQEAYNFIENM-PLEPDVVAWGSLLSACRV- 594 (785)
Q Consensus 525 ~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~- 594 (785)
.. .+++++|..+|++..+ . .+...+..+..+|.+ .+++++|.+.+++. ... +...+..+...+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTT
T ss_pred HcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcC
Confidence 44 5555555555555443 1 123334444444444 44555555444443 111 13334444444444
Q ss_pred ---cCCHHHHHHHHHHHHhhCC
Q 003937 595 ---HKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 595 ---~g~~~~a~~~~~~~~~~~p 613 (785)
.++.++|...++++.+.+|
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCcccCHHHHHHHHHHHHHcCC
Confidence 4444555555555544444
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.41 E-value=9e-11 Score=117.72 Aligned_cols=225 Identities=12% Similarity=-0.007 Sum_probs=193.4
Q ss_pred CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCCHHHHHHHHHhcccCCChhHHHHHH
Q 003937 411 NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSK----AGNINAARRVFNLIHWRQETVSWTSMI 486 (785)
Q Consensus 411 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~~p~~~~~~~li 486 (785)
+..++..+-..+...+++++|...+....+. .+...+..+...|.. .|++++|...|++.....+...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3445666667788889999999999999983 456777889999999 999999999999886665888999999
Q ss_pred HHHHH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH
Q 003937 487 VALAQ----HGLGEEAIQLFERMLELGIKPDHITYVGVLTACTH----GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD 558 (785)
Q Consensus 487 ~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 558 (785)
..|.. .+++++|++.|++..+.+ +...+..+...+.. .+++++|..+|++..+ .+ +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-LN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-cC---cHHHHHHHHH
Confidence 99999 999999999999999865 66788888888888 9999999999999886 33 5667778888
Q ss_pred HHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh--
Q 003937 559 LLGR----AGLLQEAYNFIENMPLEPDVVAWGSLLSACRV----HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS-- 628 (785)
Q Consensus 559 ~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 628 (785)
.|.. .++.++|.+.+++.--..+...+..+...+.. .++.++|...++++.+.+| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8888 99999999999987222356788888888988 9999999999999999876 6788999999999
Q ss_pred --cCChHHHHHHHHHHHhCCC
Q 003937 629 --CGKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 629 --~g~~~~a~~~~~~m~~~g~ 647 (785)
.|++++|.+++++..+.|.
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTC
T ss_pred CcccCHHHHHHHHHHHHHcCC
Confidence 9999999999999987664
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=2.4e-11 Score=120.25 Aligned_cols=196 Identities=10% Similarity=-0.030 Sum_probs=150.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTA 523 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a 523 (785)
...+..+...|...|++++|.+.|+++.. +.+...|..+...|...|++++|++.|+++.+. .| +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHH
Confidence 34556677777888888888888876642 225667788888888888888888888888774 34 45577777778
Q ss_pred hhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 003937 524 CTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 524 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 600 (785)
+...|++++|..+++++.+ .+..| +...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+.++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888765 33344 3556777788888888888888888776 2334 46778888888888888888
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
|...++++++..|++...+..++.+|...|++++|.++++++.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888664
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.41 E-value=1.8e-11 Score=132.35 Aligned_cols=214 Identities=9% Similarity=0.049 Sum_probs=112.2
Q ss_pred hHHHHHHHHHhcC---CHHHHHHHHHhcCC---CCHhHHHHHHHHHHHc----CChhHHHHHHHHHHHcCCCCCHhhHHH
Q 003937 348 AFTTLLDGYIKIG---DIGPARRIFDSLRD---RDVVAWTAMLVGYEQN----GLNKDAVELFRSMVREGPKPNNYTLSA 417 (785)
Q Consensus 348 ~~~~li~~~~~~g---~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~t~~~ 417 (785)
++..+...|.+.| +.++|...|+...+ ++...+..+...|... +++++|+..|++.. .|. ...+..
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~---~~a~~~ 253 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGY---PASWVS 253 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGS---THHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCC---HHHHHH
Confidence 5555555555555 55555555554432 2222223444444332 45666666666655 221 122222
Q ss_pred HHHH-H--hccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcC-----CHHHHHHHHHhcccCCChhHHHHHHHHH
Q 003937 418 MLSV-S--SSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAG-----NINAARRVFNLIHWRQETVSWTSMIVAL 489 (785)
Q Consensus 418 ll~a-~--~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g-----~~~~A~~~~~~~~~~p~~~~~~~li~~~ 489 (785)
+-.. + ...++.++|...+....+.| +......|..+|. .| ++++|.+.|++.. ..+...+..|...|
T Consensus 254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 254 LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIY 328 (452)
T ss_dssp HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 2222 1 33566666666666666655 4445555666665 44 7777777777766 54666677766666
Q ss_pred HH----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc----cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHh
Q 003937 490 AQ----HGLGEEAIQLFERMLELGIKPDHITYVGVLTACTH----GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLG 561 (785)
Q Consensus 490 ~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 561 (785)
.. ..+.++|+..|++..+.|. |+ ....+...|.. ..+.++|..+|+...+ .|.. +....-..+....
T Consensus 329 ~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~-~g~~-~a~~~l~~l~~~~ 403 (452)
T 3e4b_A 329 RRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA-QDTP-EANDLATQLEAPL 403 (452)
T ss_dssp HTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT-TCCH-HHHHHHHHHHTTC
T ss_pred HCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH-CCCH-HHHHHHHHHHHhC
Confidence 55 3377778877777777552 22 23333334432 4567777777777765 3322 2111111122222
Q ss_pred hcCCHHHHHHHHHh
Q 003937 562 RAGLLQEAYNFIEN 575 (785)
Q Consensus 562 ~~g~~~~A~~~~~~ 575 (785)
..++..+|..+.++
T Consensus 404 ~~~~~~~a~~~~~~ 417 (452)
T 3e4b_A 404 TPAQRAEGQRLVQQ 417 (452)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 33455566665554
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.41 E-value=3.5e-11 Score=116.47 Aligned_cols=197 Identities=11% Similarity=0.035 Sum_probs=157.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 003937 446 SLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLT 522 (785)
Q Consensus 446 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 522 (785)
+...+..+...|...|++++|.+.|++... +.+...|..+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI--KPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCChHHHHHHHH
Confidence 455667778888888888888888887642 225677888888888899999999999888874 44 4567788888
Q ss_pred Hhhcc-CCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 003937 523 ACTHG-GLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNL 598 (785)
Q Consensus 523 a~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~ 598 (785)
.+... |++++|..+++.+.+ .+..|+ ...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 88888 999999999988876 333343 567778888888999999999888877 3344 477888888888999999
Q ss_pred HHHHHHHHHHHhhCC-CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 599 DLGKIAAEKLLLIEP-DNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 599 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
++|...++++++..| +++..+..+...+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999888 88888888888889999999999988888653
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.39 E-value=9.6e-11 Score=115.84 Aligned_cols=205 Identities=16% Similarity=0.098 Sum_probs=151.9
Q ss_pred HhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003937 377 VVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITM 456 (785)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 456 (785)
...|..+...+...|++++|+..|+++.... | .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~----------------------------------~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--P----------------------------------SSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--C----------------------------------ChHHHHHHHHHH
Confidence 4567777777888888888888888776642 2 123344556666
Q ss_pred HHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHH
Q 003937 457 YSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 457 y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a 533 (785)
|.+.|++++|.+.|++... +.+...|..+...|...|++++|++.|+++.+.+..|+. ..+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 7777777777777776531 225667777888888888888888888888774445644 4677777788888888888
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
..+++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|+.++|...++++.+.
T Consensus 161 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8888887752 2334667788888889999999999888887 3344 5667888888889999999999999999999
Q ss_pred CCCCchhH
Q 003937 612 EPDNSGAY 619 (785)
Q Consensus 612 ~p~~~~~~ 619 (785)
.|+++...
T Consensus 239 ~p~~~~~~ 246 (252)
T 2ho1_A 239 YPGSLEYQ 246 (252)
T ss_dssp CTTSHHHH
T ss_pred CCCCHHHH
Confidence 99776544
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.38 E-value=1.1e-11 Score=121.82 Aligned_cols=196 Identities=13% Similarity=0.111 Sum_probs=142.1
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 003937 446 SLSVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLT 522 (785)
Q Consensus 446 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~ 522 (785)
....+..+...+...|++++|...|++.... .+...|..+...|...|++++|++.|+++.+. .| +..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL--DSSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCcchHHHHHHHH
Confidence 4455566777788888888888888876432 35677888888888888999999988888874 44 4567777888
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 600 (785)
.+...|++++|..+++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 888889999999888888762 2345667788888888999999999888877 3334 57788888888889999999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 601 GKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
|...++++++..|+++.++..++.+|...|++++|...++++.+.
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 999999999999988888999999999999999999999888764
No 51
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.36 E-value=2.7e-11 Score=113.32 Aligned_cols=164 Identities=16% Similarity=0.092 Sum_probs=130.3
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASM 556 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 556 (785)
+...|..+...|...|++++|++.|++.++ +.|+. .++..+..++...|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 456677788888888888888888888877 45654 47777777888888888888888777652 23335566667
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH
Q 003937 557 VDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 557 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 634 (785)
...+...+++++|.+.+.+. ...| +...|..+...+...|++++|+..++++++++|.++.++..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 77788888888888888776 3344 467788888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhC
Q 003937 635 AANIRKSMKYV 645 (785)
Q Consensus 635 a~~~~~~m~~~ 645 (785)
|.+.+++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999988764
No 52
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.35 E-value=1.8e-10 Score=111.33 Aligned_cols=209 Identities=12% Similarity=0.039 Sum_probs=151.8
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003937 376 DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALIT 455 (785)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 455 (785)
+...|..+...+...|++++|+..|+++.+.. |+ +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PK----------------------------------NELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--cc----------------------------------chHHHHHHHH
Confidence 44566677777777777777777777766532 22 2334455666
Q ss_pred HHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHH
Q 003937 456 MYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQH-GLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVE 531 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~ 531 (785)
.|...|++++|.+.|++... +.+...|..+...|... |++++|+..|+++.+.+..|+. ..+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 67777777777777776532 22566778888888888 8888888888888874344543 46777778888888888
Q ss_pred HHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003937 532 QGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP--DVVAWGSLLSACRVHKNLDLGKIAAEKL 608 (785)
Q Consensus 532 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 608 (785)
+|...++++.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+.+.+...++.+
T Consensus 131 ~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 131 LAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 888888887752 2234667788888888999999999888877 2233 5667777777788999999999999999
Q ss_pred HhhCCCCchhHHHH
Q 003937 609 LLIEPDNSGAYSAL 622 (785)
Q Consensus 609 ~~~~p~~~~~~~~l 622 (785)
.+..|+++.....+
T Consensus 209 ~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 209 QANFPYSEELQTVL 222 (225)
T ss_dssp HHHCTTCHHHHHHH
T ss_pred HHhCCCCHHHHHHh
Confidence 99999877655443
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.35 E-value=5.7e-11 Score=124.22 Aligned_cols=243 Identities=10% Similarity=0.068 Sum_probs=169.4
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHhccCc-hHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003937 378 VAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPN-NYTLSAMLSVSSSLAS-LDHGKQIHASALRSGEASSLSVSNALIT 455 (785)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~ 455 (785)
..|+.+...+.+.|++++|+..|++.+.. .|+ ...|..+..++...|+ +++|...+..+++.. +.+...|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 34555555555566666666666665553 333 2334444445555554 666666666555543 234566677777
Q ss_pred HHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhc-cCCHH
Q 003937 456 MYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTH-GGLVE 531 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~-~g~~~ 531 (785)
.|.+.|++++|...|+++.. ..+...|..+..++...|++++|+..|+++++ +.|+ ...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 78888888888888887642 22677888888888889999999999999988 5665 4578888888877 56656
Q ss_pred HH-----HHHHHHhhhcCCCCCC-chhHHHHHHHHhhcC--CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC------
Q 003937 532 QG-----QRYYNMMKNVHKIKPT-PSHFASMVDLLGRAG--LLQEAYNFIENMPLEPD-VVAWGSLLSACRVHK------ 596 (785)
Q Consensus 532 ~a-----~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g------ 596 (785)
+| ...+++..+ +.|+ ...|..+..+|.+.| ++++|.+.+.++...|+ ...+..+...+...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 66 477777765 3444 667888888888888 58889888887755564 667788888887763
Q ss_pred --C-HHHHHHHHHHH-HhhCCCCchhHHHHHHHHHh
Q 003937 597 --N-LDLGKIAAEKL-LLIEPDNSGAYSALCNLYSS 628 (785)
Q Consensus 597 --~-~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~ 628 (785)
+ .++|+.+++++ .+++|.....|..++..+..
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 2 58999999999 89999888888877776543
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.34 E-value=2.6e-11 Score=119.10 Aligned_cols=214 Identities=14% Similarity=0.075 Sum_probs=141.2
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003937 376 DVVAWTAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALIT 455 (785)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 455 (785)
....|..+...+.+.|++++|+..|+++.+. .| .+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~----------------------------------~~~~~~~~la~ 65 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NK----------------------------------EDAIPYINFAN 65 (243)
T ss_dssp --------------------CCTTHHHHHTT--CT----------------------------------TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Cc----------------------------------ccHHHHHHHHH
Confidence 3445666666677777777777777776652 22 22344455666
Q ss_pred HHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHH
Q 003937 456 MYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 533 (785)
.|.+.|++++|...|++... +.+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|
T Consensus 66 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 66 LLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 67777777777777776532 2256677778888888888888888888887742 23455777777788888888888
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
..+++++.+. .+.+...+..+...|.+.|++++|.+.++++ ...| +..+|..+...+...|+.++|...+++++++
T Consensus 145 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 145 LPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8888887652 2335667788888888999999998888877 2334 5778899999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHh
Q 003937 612 EPDNSGAYSALCNLYSS 628 (785)
Q Consensus 612 ~p~~~~~~~~l~~~~~~ 628 (785)
.|+++..+..+..+...
T Consensus 223 ~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 223 QPDHMLALHAKKLLGHH 239 (243)
T ss_dssp CTTCHHHHHHHTC----
T ss_pred CcchHHHHHHHHHHHhh
Confidence 99888877766555433
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.33 E-value=5.2e-11 Score=127.02 Aligned_cols=197 Identities=14% Similarity=0.058 Sum_probs=136.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccC----CC----hhHHHHHHHHHHHcCC--------------------hHHHH
Q 003937 448 SVSNALITMYSKAGNINAARRVFNLIHWR----QE----TVSWTSMIVALAQHGL--------------------GEEAI 499 (785)
Q Consensus 448 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~----p~----~~~~~~li~~~~~~g~--------------------~~~A~ 499 (785)
.++..+...|...|++++|...|++.... ++ ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 34556666777777777777777654211 12 3366777777777787 78888
Q ss_pred HHHHHHHHC----CCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC----chhHHHHHHHHhhcCCHHHHH
Q 003937 500 QLFERMLEL----GIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT----PSHFASMVDLLGRAGLLQEAY 570 (785)
Q Consensus 500 ~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 570 (785)
..+++..+. +-.|.. .++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 777766542 112222 36677777788888888888888777642111122 236777788888888888888
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCChHHHH
Q 003937 571 NFIENM----PLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN------SGAYSALCNLYSSCGKWEDAA 636 (785)
Q Consensus 571 ~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~ 636 (785)
+.+++. +-.++ ..++..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 888775 11112 4567778888889999999999999988864432 457888899999999999999
Q ss_pred HHHHHHHh
Q 003937 637 NIRKSMKY 644 (785)
Q Consensus 637 ~~~~~m~~ 644 (785)
..+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888754
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.33 E-value=1.6e-11 Score=131.36 Aligned_cols=198 Identities=13% Similarity=0.025 Sum_probs=139.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhccc-------CC-ChhHHHHHHHHHHHcCC-----------------hHHHHHH
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIHW-------RQ-ETVSWTSMIVALAQHGL-----------------GEEAIQL 501 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~p-~~~~~~~li~~~~~~g~-----------------~~~A~~~ 501 (785)
..++..+...|...|++++|...|++... .| ...+|..+...|...|+ +++|++.
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 34556666777777777777777765421 11 23457777777888888 7888887
Q ss_pred HHHHHHC----CCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC----chhHHHHHHHHhhcCCHHHHHHH
Q 003937 502 FERMLEL----GIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT----PSHFASMVDLLGRAGLLQEAYNF 572 (785)
Q Consensus 502 ~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~ 572 (785)
+++..+. +-.|.. .++..+...+...|++++|..++++..+...-.++ ...+..+...|...|++++|.+.
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 7776542 112222 36677777888888888888888877642111112 22677788888889999988888
Q ss_pred HHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCChHHHHHH
Q 003937 573 IENM-PL---EPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN------SGAYSALCNLYSSCGKWEDAANI 638 (785)
Q Consensus 573 ~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~ 638 (785)
+++. .. ..+ ..+|..+...+...|++++|...+++++++.+.. ..++..++.+|...|++++|...
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 8776 11 111 4577788888999999999999999998864422 34788899999999999999999
Q ss_pred HHHHHh
Q 003937 639 RKSMKY 644 (785)
Q Consensus 639 ~~~m~~ 644 (785)
+++..+
T Consensus 366 ~~~al~ 371 (411)
T 4a1s_A 366 AEQHLQ 371 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 57
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.33 E-value=5.1e-11 Score=123.21 Aligned_cols=199 Identities=14% Similarity=0.061 Sum_probs=142.2
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcc----cCCC----hhHHHHHHHHHHHcCC--------------------hHHH
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIH----WRQE----TVSWTSMIVALAQHGL--------------------GEEA 498 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~p~----~~~~~~li~~~~~~g~--------------------~~~A 498 (785)
..++..+...|...|++++|...|++.. ..++ ..++..+...|...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 3455667777777888888887777642 1122 2367777777888888 8888
Q ss_pred HHHHHHHHHC----CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC----chhHHHHHHHHhhcCCHHHH
Q 003937 499 IQLFERMLEL----GIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT----PSHFASMVDLLGRAGLLQEA 569 (785)
Q Consensus 499 ~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 569 (785)
++.+++.... +-.|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|.+.|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888776542 11222 236677777888888888888888877642111122 33677788888999999999
Q ss_pred HHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHHHHHHHHHhcCChHHH
Q 003937 570 YNFIENM----PLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN------SGAYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 570 ~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a 635 (785)
.+.+++. +-.++ ..++..+...+...|++++|...+++++++.|.. ..++..++.+|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 8888776 11122 4567788888999999999999999998864432 34788899999999999999
Q ss_pred HHHHHHHHhC
Q 003937 636 ANIRKSMKYV 645 (785)
Q Consensus 636 ~~~~~~m~~~ 645 (785)
...+++..+.
T Consensus 323 ~~~~~~a~~~ 332 (338)
T 3ro2_A 323 MHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 9999998753
No 58
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.33 E-value=9.9e-11 Score=117.23 Aligned_cols=239 Identities=13% Similarity=0.075 Sum_probs=181.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----HhHHHHHHH
Q 003937 313 GPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD--RD----VVAWTAMLV 385 (785)
Q Consensus 313 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~ 385 (785)
..+.......|...|++++|...|++.....| +...|..+...|.+.|++++|...|+...+ ++ ..+|..+..
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 34456677889999999999999999776665 566999999999999999999999998765 22 234888899
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHH
Q 003937 386 GYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINA 465 (785)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~ 465 (785)
.|...|++++|+..|++..+.. |+ +..++..+...|...|++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~--~~----------------------------------~~~~~~~l~~~~~~~~~~~~ 126 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD--TT----------------------------------RLDMYGQIGSYFYNKGNFPL 126 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--TT----------------------------------CTHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC--cc----------------------------------cHHHHHHHHHHHHHccCHHH
Confidence 9999999999999999887732 22 23445678888899999999
Q ss_pred HHHHHHhcccC-C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCC---HHHHHHHHHH
Q 003937 466 ARRVFNLIHWR-Q-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGL---VEQGQRYYNM 539 (785)
Q Consensus 466 A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~---~~~a~~~~~~ 539 (785)
|...|++.... | +...|..+...+...+++++|++.|++..+ ..|+ ...+..+..++...|. +++|...+++
T Consensus 127 A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 204 (272)
T 3u4t_A 127 AIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEK 204 (272)
T ss_dssp HHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHH
T ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHH
Confidence 99999887532 3 566777777344445699999999999988 4565 4567777777777777 7778888887
Q ss_pred hhhcCCCCCC------chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 003937 540 MKNVHKIKPT------PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLL 589 (785)
Q Consensus 540 m~~~~~~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll 589 (785)
..+...-.|+ ...|..+...|.+.|++++|.+.+++. .+.|+ ...+..+.
T Consensus 205 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhh
Confidence 7653323344 256778888999999999999999887 45564 44444443
No 59
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.33 E-value=5.8e-11 Score=114.34 Aligned_cols=204 Identities=15% Similarity=0.074 Sum_probs=111.4
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC---CCHhHHHHHHHH
Q 003937 311 ATGPVGNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD---RDVVAWTAMLVG 386 (785)
Q Consensus 311 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~ 386 (785)
++...+..+...+.+.|++++|...|++.....| +...|..+...+.+.|++++|...|++..+ .+...|..+...
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEA 82 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3444555566666666666666666666444443 455555566666666666666665555432 234445555555
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHH
Q 003937 387 YEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAA 466 (785)
Q Consensus 387 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A 466 (785)
+.+.+. . .++ .....|++++|...+..+++.. +.+...+..+...|...|++++|
T Consensus 83 ~~~~~~-------------~--~~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 83 YVALYR-------------Q--AED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHH-------------T--CSS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhhh-------------h--hhh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHH
Confidence 554400 0 000 0000155555555555555442 22445556677777888888888
Q ss_pred HHHHHhccc-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 467 RRVFNLIHW-RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 467 ~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
...|++... ..+...|..+...|...|++++|+..|++..+ ..|+ ...+..+..++...|++++|...+++..
T Consensus 138 ~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 138 EASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888876521 14677788888888888888888888888887 4554 4567777778888888888888877653
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.32 E-value=5e-11 Score=119.56 Aligned_cols=244 Identities=12% Similarity=0.012 Sum_probs=138.8
Q ss_pred hCCChhHHHHHHHHhHHCCCC--C-ChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHH
Q 003937 122 EIGRFKNAIRMFVEMVQDQVL--P-TQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMM 198 (785)
Q Consensus 122 ~~g~~~~a~~~~~~m~~~g~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~ 198 (785)
..|++++|+..|+++.+.... | +..++..+...+...|+++.|...++.+++.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346677777777777764321 1 34456666677777777777777777777764 4456667777777777777777
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCCh
Q 003937 199 AKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDK 278 (785)
Q Consensus 199 A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~ 278 (785)
|...|++....+ ..+..+|..+...|.+.|++++|+..|++++.. .|+.
T Consensus 96 A~~~~~~al~~~----------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~ 144 (275)
T 1xnf_A 96 AYEAFDSVLELD----------------------------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPND 144 (275)
T ss_dssp HHHHHHHHHHHC----------------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTC
T ss_pred HHHHHHHHHhcC----------------------------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCC
Confidence 777776554111 234566777777777777777777777777432 3444
Q ss_pred hhHHHHHHHHhcccchhhHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHhCCCCCc-----hHhHHHHH
Q 003937 279 FTLASTLSACANLEKLKLGKQIHAYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQSGISYLN-----VIAFTTLL 353 (785)
Q Consensus 279 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~li 353 (785)
......+..+...|+++.|...+....+.. +++... ..++..+...++.++|...+++.....++ ..+|..+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 222 (275)
T 1xnf_A 145 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLG 222 (275)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHH
Confidence 444444444455566666666666555543 222222 33556666666666666666665544431 34455555
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHH
Q 003937 354 DGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVEL 399 (785)
Q Consensus 354 ~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 399 (785)
..|.+.|++++|...|+...+.++..|.....++...|++++|++-
T Consensus 223 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 223 KYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDD 268 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHC---
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhHHH
Confidence 5555555555555555554443332233333344444444444443
No 61
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.30 E-value=3.1e-11 Score=131.27 Aligned_cols=194 Identities=6% Similarity=-0.046 Sum_probs=166.3
Q ss_pred CchHHHHHHHHHHHhcCCH-HHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 003937 445 SSLSVSNALITMYSKAGNI-NAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVL 521 (785)
Q Consensus 445 ~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 521 (785)
.+...+..+...|...|++ ++|.+.|++.. ..| +...|..+...|...|++++|++.|++..+ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 4566777788888888898 99998888763 223 577899999999999999999999999998 568878888888
Q ss_pred HHhhcc---------CCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc--------CCHHHHHHHHHhC-CCCC---
Q 003937 522 TACTHG---------GLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA--------GLLQEAYNFIENM-PLEP--- 580 (785)
Q Consensus 522 ~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~p--- 580 (785)
.++... |++++|...+++..+. -+.+...|..+..+|.+. |++++|.+.|++. .+.|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 899999 9999999999998762 233477888899999888 9999999999988 4456
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 581 -DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 581 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
+...|..+...+...|++++|...++++++++|+++.++..+..++...|++++|.+.+.++
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67889999999999999999999999999999999999999999999999999998765443
No 62
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.30 E-value=6.5e-11 Score=123.78 Aligned_cols=224 Identities=11% Similarity=0.072 Sum_probs=189.0
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC-HHHHHHHHHhccc-CC-ChhHHHHHHHHHH
Q 003937 414 TLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGN-INAARRVFNLIHW-RQ-ETVSWTSMIVALA 490 (785)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~~-~p-~~~~~~~li~~~~ 490 (785)
.|..+...+...|++++|...+..+++.. +.+...++.+...|.+.|+ +++|...|++... .| +...|+.+...+.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45556667788899999999999999875 4467888999999999997 9999999998742 23 6788999999999
Q ss_pred HcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhh-cCCHH
Q 003937 491 QHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGR-AGLLQ 567 (785)
Q Consensus 491 ~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~-~g~~~ 567 (785)
..|++++|+..|+++++ +.|+. ..|..+..++...|++++|...++++.+ +.| +...|+.+..+|.+ .|..+
T Consensus 178 ~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~---l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 178 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK---EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999 56754 5899999999999999999999999986 234 47788999999998 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC--------
Q 003937 568 EA-----YNFIENM-PLEP-DVVAWGSLLSACRVHK--NLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCG-------- 630 (785)
Q Consensus 568 ~A-----~~~~~~~-~~~p-~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 630 (785)
+| ++.+++. .+.| +...|+.+...+...| +.++|...++++ +.+|+++..+..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4667666 4566 4778999998888888 689999999998 899999999999999999975
Q ss_pred -ChHHHHHHHHHH-Hh
Q 003937 631 -KWEDAANIRKSM-KY 644 (785)
Q Consensus 631 -~~~~a~~~~~~m-~~ 644 (785)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999998 44
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.29 E-value=3.7e-11 Score=128.15 Aligned_cols=291 Identities=15% Similarity=0.025 Sum_probs=183.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHhCCCCC-c----hHhHHHHHHHHHhcCCHHHHHHHHHhcCC-----C----CHh
Q 003937 313 GPVGNALISCYAKVGGVEIAQKIVEQSGISYL-N----VIAFTTLLDGYIKIGDIGPARRIFDSLRD-----R----DVV 378 (785)
Q Consensus 313 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~f~~~~~-----~----~~~ 378 (785)
...+..+...+.+.|++++|...|++.....| + ..+|..+...|...|++++|...|+.... . ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 33445566677777777777777776444333 2 24566677777777777777776665431 1 133
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003937 379 AWTAMLVGYEQNGLNKDAVELFRSMVREGPK-PNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY 457 (785)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 457 (785)
+|..+...|...|++++|+..|++....... ++. .....++..+...|
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVY 137 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHHH
Confidence 5556666666667777777666665432100 010 00122344555556
Q ss_pred HhcCC--------------------HHHHHHHHHhcc----cCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCC
Q 003937 458 SKAGN--------------------INAARRVFNLIH----WRQ----ETVSWTSMIVALAQHGLGEEAIQLFERMLELG 509 (785)
Q Consensus 458 ~~~g~--------------------~~~A~~~~~~~~----~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 509 (785)
...|+ +++|...+++.. ..+ ...+|..+...|...|++++|+..|++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 66666 666666655432 111 13457777778888888888888888776521
Q ss_pred C-CCC----HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC----chhHHHHHHHHhhcCCHHHHHHHHHhC----
Q 003937 510 I-KPD----HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT----PSHFASMVDLLGRAGLLQEAYNFIENM---- 576 (785)
Q Consensus 510 ~-~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---- 576 (785)
. .++ ..++..+...+...|++++|..++++..+...-.++ ...+..+...|.+.|++++|.+.+++.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 112 126777777888888888888888876542111111 456777888888999999998888776
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------CCchhHHHHHHHHHhcCChHH
Q 003937 577 PLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP------DNSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 577 ~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~ 634 (785)
+..++ ..++..+...+...|++++|...+++++++.+ ....++..++.+|...|+...
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 11122 45777888889999999999999999988632 234567778888888877643
No 64
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.25 E-value=4.2e-08 Score=109.57 Aligned_cols=443 Identities=11% Similarity=0.050 Sum_probs=224.3
Q ss_pred cchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCC---CChhhHHHHHHHHHccCC---hhHHHHHH
Q 003937 29 PFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPV---KTLCSWNTILSAYAKQGR---LDLACEVF 102 (785)
Q Consensus 29 ~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~f 102 (785)
..+-...++..+..+ +.|...|..++..+.+.+.+..++.+|+.+.. .....|...+..-.+.|. ++.+..+|
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 444555566666665 46889999999999888999999999998763 355678888888888888 89999999
Q ss_pred hhCCC-----CCccHHHHHHHHHHhCCCh--------hHHHHHHHHhHH-CCC-CCCh-hhHHHHHHHHhc---------
Q 003937 103 NLMPN-----RDSVSWTTIIVTYNEIGRF--------KNAIRMFVEMVQ-DQV-LPTQ-FTVTSVLASCTA--------- 157 (785)
Q Consensus 103 ~~m~~-----~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~g~-~p~~-~t~~~ll~~~~~--------- 157 (785)
++... |++..|...+.-..+.++. +...++|+..+. .|. .|+. ..|..-+.....
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 87543 6677788877765554443 233467766543 465 5543 345444443321
Q ss_pred cCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhc
Q 003937 158 LGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQM 237 (785)
Q Consensus 158 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~ 237 (785)
.++++.++++|..++......-..+|......--..+ ...+.+++.+. ...++.|...+.++
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~-----------------~~~y~~Ar~~~~e~ 268 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL-----------------SAQYMNARSLYQDW 268 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh-----------------hHHHHHHHHHHHHH
Confidence 2345667777777764321111222322211111101 11122222111 01222222222211
Q ss_pred ------CCCC---c-ccHHHHHHHHhhCC-CchHHHHHHHHhh---hcCCCCCChhhHHHHHHHHhcccchhhHHHHHHH
Q 003937 238 ------IERD---V-VTWNSMIAGYSQNG-YDFEALGMFANML---KDSSLKPDKFTLASTLSACANLEKLKLGKQIHAY 303 (785)
Q Consensus 238 ------~~~~---~-~~~~~li~~~~~~g-~~~~A~~l~~~ml---~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 303 (785)
+.+. . .+.+ +...-..+ .....+.++...+ +..+...+.. ...+....+++.
T Consensus 269 ~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~------------~~~~Rv~~~Ye~ 334 (679)
T 4e6h_A 269 LNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDD------------LHKARMTYVYMQ 334 (679)
T ss_dssp HHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHH------------HHHHHHHHHHHH
T ss_pred HHHHHhHhhccccccccch--hccCCCCchhHHHHHHHHHHHHHHHHhCCccccch------------hhHHHHHHHHHH
Confidence 0000 0 0000 00000000 0011112221111 0111000000 001223344444
Q ss_pred HHHhcCCCCcchHHHHHHHHHhcCChHHHH-HHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcCC-------
Q 003937 304 IIRTEFDATGPVGNALISCYAKVGGVEIAQ-KIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLRD------- 374 (785)
Q Consensus 304 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~~------- 374 (785)
++.. ++....+|-..+..+...|+.++|. ++|++.....| +...|..++...-+.|+++.|+.+|+.+.+
T Consensus 335 aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~ 413 (679)
T 4e6h_A 335 AAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA 413 (679)
T ss_dssp HHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence 4443 2334555555666666666666664 66666433333 445566666666667777777777765542
Q ss_pred ------C------------CHhHHHHHHHHHHHcCChhHHHHHHHHHHHc-C-CCCCHhhHHHHHHHHhccCchHHHHHH
Q 003937 375 ------R------------DVVAWTAMLVGYEQNGLNKDAVELFRSMVRE-G-PKPNNYTLSAMLSVSSSLASLDHGKQI 434 (785)
Q Consensus 375 ------~------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g-~~p~~~t~~~ll~a~~~~~~~~~a~~~ 434 (785)
| ....|-..+....+.|..+.|..+|.+..+. + ..+......+.+... ..++.+.|+.+
T Consensus 414 ~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~i 492 (679)
T 4e6h_A 414 ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKV 492 (679)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHH
T ss_pred hhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHH
Confidence 1 1124555555555666677777777776654 1 111122222222211 12346666777
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003937 435 HASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-Q----ETVSWTSMIVALAQHGLGEEAIQLFERMLE 507 (785)
Q Consensus 435 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 507 (785)
|...++. ++.+...+...++.....|+.+.|..+|++.... | ....|...+.--.+.|+.+.+.++.+++.+
T Consensus 493 fe~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 493 LELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666665 3445555566666666666677777777665432 2 123566666666666666666666666666
No 65
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.24 E-value=8.9e-11 Score=132.76 Aligned_cols=162 Identities=20% Similarity=0.266 Sum_probs=134.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFAS 555 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 555 (785)
+..+|+.|...|.+.|++++|++.|++.++ +.|+. .++..+..++.+.|++++|...|++..+ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 355678888888888888888888888887 56764 4777888888888888888888887765 3444 667888
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChH
Q 003937 556 MVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWE 633 (785)
Q Consensus 556 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 633 (785)
+..+|.+.|++++|++.|++. .+.|+ ...|+.+...+...|++++|+..++++++++|+++..+..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888888888888888888876 45664 7789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 003937 634 DAANIRKSMKY 644 (785)
Q Consensus 634 ~a~~~~~~m~~ 644 (785)
+|.+.+++..+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888753
No 66
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.24 E-value=1.1e-10 Score=124.97 Aligned_cols=267 Identities=12% Similarity=0.017 Sum_probs=171.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhCCCCCc-h----HhHHHHHHHHHhcCCHHHHHHHHHhcCC---------CCHhHHH
Q 003937 316 GNALISCYAKVGGVEIAQKIVEQSGISYLN-V----IAFTTLLDGYIKIGDIGPARRIFDSLRD---------RDVVAWT 381 (785)
Q Consensus 316 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~li~~~~~~g~~~~A~~~f~~~~~---------~~~~~~~ 381 (785)
+..+...+...|++++|...|++.....|+ . ..|..+...|...|++++|...|++..+ ....+|.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 344556677777777777777765443332 2 3566677777777777777776665432 1234555
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhc
Q 003937 382 AMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSG-EASSLSVSNALITMYSKA 460 (785)
Q Consensus 382 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~~y~~~ 460 (785)
.+...|...|++++|+..|++...... +.+ .+....++..+...|...
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~ 179 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLAR-------------------------------QLGDRLSEGRALYNLGNVYHAK 179 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHH-------------------------------HhhchHHHHHHHHHHHHHHHHc
Confidence 666666666666666666666543200 000 011123445555666666
Q ss_pred CC-----------------HHHHHHHHHhcc-------cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC-
Q 003937 461 GN-----------------INAARRVFNLIH-------WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGI-KPD- 513 (785)
Q Consensus 461 g~-----------------~~~A~~~~~~~~-------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~- 513 (785)
|+ +++|.+.+++.. ..+ ....|..+...|...|++++|+..|++..+... .++
T Consensus 180 g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (411)
T 4a1s_A 180 GKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR 259 (411)
T ss_dssp HHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc
Confidence 66 666666665432 111 234677777888888888888888888765210 011
Q ss_pred ---HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC----CchhHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC-
Q 003937 514 ---HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP----TPSHFASMVDLLGRAGLLQEAYNFIENM-PL---EPD- 581 (785)
Q Consensus 514 ---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~- 581 (785)
..++..+...+...|++++|...+++..+...-.. ....+..+...|.+.|++++|.+.+++. .+ .++
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 260 AAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 12677777888888999999888887764211111 1456777888899999999999888876 11 112
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 582 ---VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 582 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
..++..+...+...|+.++|...+++++++.+
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 34777888889999999999999999998876
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.23 E-value=2.1e-10 Score=107.26 Aligned_cols=167 Identities=13% Similarity=0.057 Sum_probs=141.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 003937 446 SLSVSNALITMYSKAGNINAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLT 522 (785)
Q Consensus 446 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~ 522 (785)
+..+|..|...|.+.|++++|.+.|++.. ..| +..+|..+...|.+.|++++|+..+.+.... .|+ ...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence 56788899999999999999999999864 223 6778999999999999999999999999884 454 456777778
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 600 (785)
.+...++++.+...+.+..+. .+.+...+..+...|.+.|++++|++.|++. .+.| +..+|..+...+...|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 889999999999999988762 2344677888999999999999999999887 4456 57789999999999999999
Q ss_pred HHHHHHHHHhhCCCCc
Q 003937 601 GKIAAEKLLLIEPDNS 616 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~ 616 (785)
|+..++++++++|+++
T Consensus 160 A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 160 AVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhCCccCH
Confidence 9999999999999643
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.22 E-value=1.8e-10 Score=118.98 Aligned_cols=263 Identities=15% Similarity=0.046 Sum_probs=141.6
Q ss_pred HHHHHhcCChHHHHHHHHHhCCCCC-c----hHhHHHHHHHHHhcCCHHHHHHHHHhcCC---------CCHhHHHHHHH
Q 003937 320 ISCYAKVGGVEIAQKIVEQSGISYL-N----VIAFTTLLDGYIKIGDIGPARRIFDSLRD---------RDVVAWTAMLV 385 (785)
Q Consensus 320 i~~y~~~g~~~~A~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~f~~~~~---------~~~~~~~~li~ 385 (785)
...+...|++++|...|++.....| + ...+..+...|...|++++|...|+...+ ....+|..+..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 3445556666666666655433322 1 24455556666666666666666554331 12345666666
Q ss_pred HHHHcCChhHHHHHHHHHHHcCC-CCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC--
Q 003937 386 GYEQNGLNKDAVELFRSMVREGP-KPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGN-- 462 (785)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-- 462 (785)
.|...|++++|+..|++...... .++... ...++..+...|...|+
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------------------~~~~~~~l~~~~~~~~~~~ 140 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVG-------------------------------EARALYNLGNVYHAKGKSF 140 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-------------------------------HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchH-------------------------------HHHHHHHHHHHHHHcCccc
Confidence 67777777777777766543210 011000 01122333334444444
Q ss_pred ------------------HHHHHHHHHhcc-------cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC--
Q 003937 463 ------------------INAARRVFNLIH-------WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGI-KPD-- 513 (785)
Q Consensus 463 ------------------~~~A~~~~~~~~-------~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~-- 513 (785)
+++|.+.+++.. ..+ ....+..+...|...|++++|+..+++..+... .++
T Consensus 141 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 220 (338)
T 3ro2_A 141 GCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 220 (338)
T ss_dssp SSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred ccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChH
Confidence 444444443321 010 123455566666666666666666666553210 011
Q ss_pred --HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC----chhHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC
Q 003937 514 --HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT----PSHFASMVDLLGRAGLLQEAYNFIENM-------PLEP 580 (785)
Q Consensus 514 --~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p 580 (785)
..++..+...+...|++++|..++++..+...-.++ ...+..+...|.+.|++++|.+.+++. +..+
T Consensus 221 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 221 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 125555666666677777777666665431111111 445666777777777777777777665 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 581 -DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 581 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
...++..+...+...|++++|...+++++++.+
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 134677778888889999999999999888765
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.21 E-value=4.6e-09 Score=107.23 Aligned_cols=184 Identities=10% Similarity=0.053 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-CCC-hh-HHHHHHHHHHHcCChHHHHHHHHHH
Q 003937 429 DHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW-RQE-TV-SWTSMIVALAQHGLGEEAIQLFERM 505 (785)
Q Consensus 429 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m 505 (785)
++|..+++..++.-.+.+...+..++..+.+.|++++|.++|++... .|+ .. .|..+...+.+.|+.++|..+|++.
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 55555555555532233445666666667777777777777766532 232 32 6777777777777777777777777
Q ss_pred HHCCCCCC-HHHHHHHHHHh-hccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-C---CC
Q 003937 506 LELGIKPD-HITYVGVLTAC-THGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-P---LE 579 (785)
Q Consensus 506 ~~~g~~p~-~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~ 579 (785)
.+. .|+ ...|....... ...|++++|..+|+...+. .+.+...|..+++.+.+.|+.++|..+|++. . +.
T Consensus 161 ~~~--~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~ 236 (308)
T 2ond_A 161 RED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred Hhc--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC
Confidence 663 232 23333332222 1257777777777766542 1224556666677777777777777777666 1 24
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc
Q 003937 580 P--DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 580 p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~ 616 (785)
| ....|..++.....+|+.+.|..+++++++..|++.
T Consensus 237 p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 4 245666666666677777777777777777777543
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=4.9e-11 Score=122.00 Aligned_cols=237 Identities=16% Similarity=0.197 Sum_probs=113.6
Q ss_pred CHhHHHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHh------C
Q 003937 376 DVVAWTAMLVGYEQNGLNKDAVELFRSMVRE-------GPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRS------G 442 (785)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g 442 (785)
+..+|..+...|...|++++|+.+|+++.+. ........+..+...+...|++++|...+..+++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3467888888999999999999999888763 11112233444444555555555555555555443 1
Q ss_pred C-CCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHC------CCCCCH-
Q 003937 443 E-ASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLEL------GIKPDH- 514 (785)
Q Consensus 443 ~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~- 514 (785)
- +....++..+...|...|++++|.. .|++..+. +-.|+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~--------------------------------~~~~a~~~~~~~~~~~~~~~~ 153 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEP--------------------------------LCKRALEIREKVLGKDHPDVA 153 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHH--------------------------------HHHHHHHHHHHHHCTTCHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHH--------------------------------HHHHHHHHHHHhcCCCChHHH
Confidence 1 1123334444444444455554444 44444432 111221
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhhhcC-----CCCC-CchhHHHHHHHHhhcCCHHHHHHHHHhCC----------C
Q 003937 515 ITYVGVLTACTHGGLVEQGQRYYNMMKNVH-----KIKP-TPSHFASMVDLLGRAGLLQEAYNFIENMP----------L 578 (785)
Q Consensus 515 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~----------~ 578 (785)
.++..+...+...|++++|..+++++.+.. +..| ....+..+...|.+.|++++|.+.++++- .
T Consensus 154 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 233 (311)
T 3nf1_A 154 KQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSV 233 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 234444444445555555555444443310 0011 12234444455555555555555544430 1
Q ss_pred CCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 579 EPDV-------VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 579 ~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
.|.. ..+..+...+...+.+.++...++++....|.+..++..++.+|...|++++|.+++++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 234 DDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1111 11112222233444555566666666666676677777888888888888888887777653
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.17 E-value=9.3e-10 Score=116.41 Aligned_cols=158 Identities=11% Similarity=0.043 Sum_probs=69.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcC-CCCC----HhhHHHHHHHHhccCchHHHHHHHHHHHHhC--CC----CchHHHHH
Q 003937 384 LVGYEQNGLNKDAVELFRSMVREG-PKPN----NYTLSAMLSVSSSLASLDHGKQIHASALRSG--EA----SSLSVSNA 452 (785)
Q Consensus 384 i~~~~~~g~~~~A~~~~~~m~~~g-~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~----~~~~~~~~ 452 (785)
...+...|++++|+..|++....- -.|+ ..++..+...+...|+++.|...+....+.- .. ....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 344556666666666666665421 0122 1233333344444444444444444443320 00 01223444
Q ss_pred HHHHHHhcCCHHHHHHHHHhcc----cCCCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHH
Q 003937 453 LITMYSKAGNINAARRVFNLIH----WRQET----VSWTSMIVALAQHGLGEEAIQLFERMLEL----GIKPDH-ITYVG 519 (785)
Q Consensus 453 li~~y~~~g~~~~A~~~~~~~~----~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ 519 (785)
+...|...|++++|...|++.. ..++. .+|..+...|...|++++|++.|++..+. +..|+. .++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 4455555555555555554332 01111 23444555555555555555555554431 111222 24444
Q ss_pred HHHHhhccCCHHHHHHHHHHhh
Q 003937 520 VLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
+..++...|++++|..++++..
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555555555555554443
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.17 E-value=8.2e-10 Score=116.82 Aligned_cols=226 Identities=9% Similarity=-0.010 Sum_probs=171.0
Q ss_pred HHHHHhccCchHHHHHHHHHHHHh----CCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhcc----cCCC-----hhHHH
Q 003937 418 MLSVSSSLASLDHGKQIHASALRS----GEAS-SLSVSNALITMYSKAGNINAARRVFNLIH----WRQE-----TVSWT 483 (785)
Q Consensus 418 ll~a~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~p~-----~~~~~ 483 (785)
....+...|+++.|...+..+.+. +-++ ...++..+...|...|++++|...+++.. ..++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 334567889999999999999874 2122 34678889999999999999999998753 1222 34688
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhc---CCC-CCCchhHH
Q 003937 484 SMIVALAQHGLGEEAIQLFERMLEL----GIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNV---HKI-KPTPSHFA 554 (785)
Q Consensus 484 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~-~p~~~~~~ 554 (785)
.+...|...|++++|++.|++..+. +-.+.. .++..+...+...|++++|...+++..+. .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8899999999999999999998753 111111 37888899999999999999999987651 122 22356788
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHH
Q 003937 555 SMVDLLGRAGLLQEAYNFIENM-PL-----EPD-VVAWGSLLSACRVHKN---LDLGKIAAEKLLLIEPDNSGAYSALCN 624 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~ 624 (785)
.+...|.+.|++++|.+.+++. .+ .|. ...+..+...+...|+ .++|...+++. ...|.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8999999999999999999887 11 222 2235666666788888 77777777776 223334567889999
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 003937 625 LYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 625 ~~~~~g~~~~a~~~~~~m~~ 644 (785)
+|...|++++|...+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999864
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.16 E-value=9.1e-11 Score=119.98 Aligned_cols=241 Identities=11% Similarity=0.100 Sum_probs=150.2
Q ss_pred chHhHHHHHHHHHhcCCHHHHHHHHHhcCC--------C---CHhHHHHHHHHHHHcCChhHHHHHHHHHHHc------C
Q 003937 345 NVIAFTTLLDGYIKIGDIGPARRIFDSLRD--------R---DVVAWTAMLVGYEQNGLNKDAVELFRSMVRE------G 407 (785)
Q Consensus 345 ~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g 407 (785)
+..++..+...|...|++++|...|+++.+ . ...+|..+...|...|++++|+..|++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 567899999999999999999999988764 2 2457888899999999999999999998764 2
Q ss_pred CCC-CHhhHHHHHHHHhccCchHHHHHHHHHHHHh------CCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhccc----
Q 003937 408 PKP-NNYTLSAMLSVSSSLASLDHGKQIHASALRS------GEAS-SLSVSNALITMYSKAGNINAARRVFNLIHW---- 475 (785)
Q Consensus 408 ~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---- 475 (785)
-.| ...++..+...+...|++++|...+..+.+. +..+ ....+..+...|...|++++|.+.|++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 233 3456777888899999999999999888764 2112 234455566666666666666666654421
Q ss_pred -----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC
Q 003937 476 -----RQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT 549 (785)
Q Consensus 476 -----~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 549 (785)
.| ...+|..+...|...|++++|++.|+++.+. .|+.. + ....+.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~~~~~-~--------------------------~~~~~~ 236 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR--AHERE-F--------------------------GSVDDE 236 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHHH-H--------------------------C-----
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhc-C--------------------------CCCCcc
Confidence 11 1234555555556666666666666655542 11000 0 001111
Q ss_pred c-------hhHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003937 550 P-------SHFASMVDLLGRAGLLQEAYNFIENMP-LEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 550 ~-------~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
. ..+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|...+++++++.|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 111222233344445555555555552 234 3567888999999999999999999999988774
No 74
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.16 E-value=2.8e-09 Score=108.83 Aligned_cols=212 Identities=8% Similarity=0.027 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHH-------hcCCH-------HHHHHHHHhccc--CC-ChhHHHHHHHHHHHc
Q 003937 430 HGKQIHASALRSGEASSLSVSNALITMYS-------KAGNI-------NAARRVFNLIHW--RQ-ETVSWTSMIVALAQH 492 (785)
Q Consensus 430 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~--~p-~~~~~~~li~~~~~~ 492 (785)
.|..+++.+++.. +.+..+|..++..+. +.|++ ++|..+|++... .| +...|..++..+...
T Consensus 34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 3334444444331 334444555555443 45775 899999998754 35 456899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHh-hcCCHHHH
Q 003937 493 GLGEEAIQLFERMLELGIKPDHI--TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLG-RAGLLQEA 569 (785)
Q Consensus 493 g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~A 569 (785)
|++++|.++|++..+ +.|+.. .|..+...+.+.|++++|..+|++..+. .+++...|........ ..|+.++|
T Consensus 113 ~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 113 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred CCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998 677643 7888999999999999999999999862 2234445544443322 36999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---CCC-CchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 570 YNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLI---EPD-NSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 570 ~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
.++|++. ...| +...|..++..+...|+.++|..+++++++. .|+ ....+..++..+.+.|++++|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999987 3334 5788999999999999999999999999995 553 56788899999999999999999999987
Q ss_pred hCC
Q 003937 644 YVG 646 (785)
Q Consensus 644 ~~g 646 (785)
+..
T Consensus 269 ~~~ 271 (308)
T 2ond_A 269 TAF 271 (308)
T ss_dssp HHT
T ss_pred HHc
Confidence 653
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.15 E-value=1.1e-09 Score=102.03 Aligned_cols=160 Identities=14% Similarity=0.060 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHH
Q 003937 482 WTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLL 560 (785)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 560 (785)
|..+...+...|++++|+..|+++.+. .| +..++..+...+...|++++|..+++++.+. .+.+...+..+...|
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDA--DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCT--TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 333344444444444444444444331 22 2234444444444455555555555444431 122344455555556
Q ss_pred hhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHH
Q 003937 561 GRAGLLQEAYNFIENM-PLE-PDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANI 638 (785)
Q Consensus 561 ~~~g~~~~A~~~~~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 638 (785)
...|++++|.+.++++ ... .+...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666665554 122 34667777777788888888888888888888888888888888888888888888888
Q ss_pred HHHHHhC
Q 003937 639 RKSMKYV 645 (785)
Q Consensus 639 ~~~m~~~ 645 (785)
+++..+.
T Consensus 167 ~~~~~~~ 173 (186)
T 3as5_A 167 FKKANEL 173 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 8877643
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=2.3e-08 Score=105.14 Aligned_cols=259 Identities=14% Similarity=0.044 Sum_probs=162.1
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHh----hHHHHHHHHhccCchHHHHHHHHHHHHh----CCC-CchHHHHHHHHH
Q 003937 386 GYEQNGLNKDAVELFRSMVREGPKPNNY----TLSAMLSVSSSLASLDHGKQIHASALRS----GEA-SSLSVSNALITM 456 (785)
Q Consensus 386 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~-~~~~~~~~li~~ 456 (785)
.+...|++++|...+++........+.. .+..+...+...|+++.|...+....+. +.. ........+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444555555555555554432111111 2223333444555555555555554432 110 012234556777
Q ss_pred HHhcCCHHHHHHHHHhccc----C-----C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCC--C-C-HHHHHHHHH
Q 003937 457 YSKAGNINAARRVFNLIHW----R-----Q-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIK--P-D-HITYVGVLT 522 (785)
Q Consensus 457 y~~~g~~~~A~~~~~~~~~----~-----p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p-~-~~t~~~ll~ 522 (785)
|...|++++|...+++... . | ....+..+...+...|++++|...+++.....-. | . ..++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 8888888888888876531 1 1 1234566777888889999999999888763221 1 1 235667777
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHH-----HHHHHHhhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFA-----SMVDLLGRAGLLQEAYNFIENMP-LEPD-----VVAWGSLLSA 591 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~~ll~~ 591 (785)
.+...|++++|...+++......-......+. ..+..+...|++++|...+++.. ..|. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 88888999999999888764211111111122 23345778999999999998872 2221 2246677777
Q ss_pred HHhcCCHHHHHHHHHHHHhhCCC-----Cc-hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 592 CRVHKNLDLGKIAAEKLLLIEPD-----NS-GAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 592 ~~~~g~~~~a~~~~~~~~~~~p~-----~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+...|+.++|...++++....+. +. ..+..++.+|...|+.++|...+++..+
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 88999999999999998775332 11 3677788999999999999999988764
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.12 E-value=4.3e-09 Score=102.09 Aligned_cols=204 Identities=10% Similarity=0.070 Sum_probs=132.0
Q ss_pred CHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-CC-ChhHHHHHHHH
Q 003937 411 NNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHW-RQ-ETVSWTSMIVA 488 (785)
Q Consensus 411 ~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p-~~~~~~~li~~ 488 (785)
|...+......+...|++++|...+..+++...+++...+..+...|.+.|++++|.+.|++... .| +...|..+...
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 44556666667777788888888888777776545556666677777788888888887776542 23 44567777777
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC---chhHHHHH
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPDH--------ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT---PSHFASMV 557 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li 557 (785)
|...|++++|+..|++..+ ..|+. ..|..+...+...|++++|...|++..+ +.|+ ...+..+.
T Consensus 86 ~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 7788888888888887777 34542 2355666667777778888887777764 3444 44556666
Q ss_pred HHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 003937 558 DLLGRAGLLQEAYNFIENM-PL-EPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY 626 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 626 (785)
..|...|+. .++++ .+ ..+...|..+. ....+.+++|...++++++++|+++.+...+..+.
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 666554432 22222 01 12333333332 23445678999999999999998887776665543
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.08 E-value=1.1e-09 Score=119.17 Aligned_cols=178 Identities=11% Similarity=0.003 Sum_probs=156.2
Q ss_pred HHHHHHHHHhcccC--CChhHHHHHHHHHHHcCCh-HHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHH
Q 003937 463 INAARRVFNLIHWR--QETVSWTSMIVALAQHGLG-EEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYN 538 (785)
Q Consensus 463 ~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~ 538 (785)
++++...++..... .+...|..+...|...|++ ++|++.|++..+ ..|+ ...+..+..++...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56666667655422 2677899999999999999 999999999998 4666 5689999999999999999999999
Q ss_pred HhhhcCCCCCCchhHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCHH
Q 003937 539 MMKNVHKIKPTPSHFASMVDLLGRA---------GLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH--------KNLD 599 (785)
Q Consensus 539 ~m~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~--------g~~~ 599 (785)
+..+ +.|+...+..+...|... |++++|.+.+++. ...| +...|..+...+... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9985 458888899999999999 9999999999987 4456 578899999999888 9999
Q ss_pred HHHHHHHHHHhhCC---CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 600 LGKIAAEKLLLIEP---DNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 600 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+|+..++++++++| +++..|..++.+|...|++++|...+++..+.
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999 99999999999999999999999999998764
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.08 E-value=2.3e-08 Score=105.40 Aligned_cols=159 Identities=9% Similarity=0.024 Sum_probs=74.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHhccCchHHHHHHHHHHHHhC--C---CC-chHHHH
Q 003937 383 MLVGYEQNGLNKDAVELFRSMVREGP-KPN----NYTLSAMLSVSSSLASLDHGKQIHASALRSG--E---AS-SLSVSN 451 (785)
Q Consensus 383 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~---~~-~~~~~~ 451 (785)
....+...|++++|+..|++....-. .++ ..++..+...+...|+++.|...+..+.+.. . .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 33445677888888888877764311 122 1233444444555555555555555444321 0 00 123344
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccc----CCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC-HHHHHH
Q 003937 452 ALITMYSKAGNINAARRVFNLIHW----RQE----TVSWTSMIVALAQHGLGEEAIQLFERMLELG---IKPD-HITYVG 519 (785)
Q Consensus 452 ~li~~y~~~g~~~~A~~~~~~~~~----~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~-~~t~~~ 519 (785)
.+...|...|++++|.+.|++... .++ ..+++.+...|...|++++|++.|++..+.. -.|+ ..++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 455555555555555555543321 011 1234445555555555555555555544310 0111 234444
Q ss_pred HHHHhhccCCHHHHHHHHHHhh
Q 003937 520 VLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
+..++.+.|++++|..++++..
T Consensus 267 la~~~~~~g~~~~A~~~~~~al 288 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGL 288 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 4445555555555555555444
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.06 E-value=5.3e-09 Score=97.28 Aligned_cols=167 Identities=11% Similarity=-0.023 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHh
Q 003937 448 SVSNALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTAC 524 (785)
Q Consensus 448 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~ 524 (785)
..+..+...|...|++++|...|+++... .+...|..+...+...|++++|+..++++.+. .| +...+..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHH
Confidence 44566788899999999999999987533 36778899999999999999999999999884 44 456888888899
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 003937 525 THGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGK 602 (785)
Q Consensus 525 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 602 (785)
...|++++|..+++++.+. .+.+...+..+...|.+.|++++|.+.+++. ...| +..+|..+...+...|+.++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999998762 3445778888999999999999999999887 3334 5778899999999999999999
Q ss_pred HHHHHHHhhCCCCchh
Q 003937 603 IAAEKLLLIEPDNSGA 618 (785)
Q Consensus 603 ~~~~~~~~~~p~~~~~ 618 (785)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999998876543
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.03 E-value=4.7e-09 Score=101.84 Aligned_cols=189 Identities=13% Similarity=-0.004 Sum_probs=132.0
Q ss_pred CchHHHHHHHHHHHhcCCHHHHHHHHHhcc--cC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 003937 445 SSLSVSNALITMYSKAGNINAARRVFNLIH--WR-QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGV 520 (785)
Q Consensus 445 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l 520 (785)
.++..+..+...|.+.|++++|...|++.. .+ ++...|..+..++...|++++|++.|++..+ ..|+. ..+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHH
Confidence 345667777778888888888888888653 22 4666777778888888888888888888887 56665 467777
Q ss_pred HHHhhccCCHHHHHHHHHHhhhcCCCCCC-c-------hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHH
Q 003937 521 LTACTHGGLVEQGQRYYNMMKNVHKIKPT-P-------SHFASMVDLLGRAGLLQEAYNFIENM-PLEPD---VVAWGSL 588 (785)
Q Consensus 521 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l 588 (785)
..++...|++++|...+++..+. .|+ . ..|..+...+.+.|++++|.+.+++. ...|+ ...|..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHH
Confidence 77888888888888888887752 333 3 34666777777788888888888776 55665 3455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 589 LSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 589 l~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...+.. .+...++++..+.+.+...|..+. ....|.+++|...+++..+.
T Consensus 160 ~~~~~~-----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 160 GVLFYN-----NGADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 555543 345556677777665555544333 34556679999999988764
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.99 E-value=1.4e-08 Score=107.08 Aligned_cols=224 Identities=12% Similarity=0.016 Sum_probs=166.5
Q ss_pred HHHhccCchHHHHHHHHHHHHhC--CC---CchHHHHHHHHHHHhcCCHHHHHHHHHhcc----cCCC-----hhHHHHH
Q 003937 420 SVSSSLASLDHGKQIHASALRSG--EA---SSLSVSNALITMYSKAGNINAARRVFNLIH----WRQE-----TVSWTSM 485 (785)
Q Consensus 420 ~a~~~~~~~~~a~~~~~~~~~~g--~~---~~~~~~~~li~~y~~~g~~~~A~~~~~~~~----~~p~-----~~~~~~l 485 (785)
..+...|+++.|...+..+.+.. .. ....++..+...|...|+++.|...+++.. ..++ ..+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 34568899999999999988652 11 124577888999999999999999888653 1122 3468889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcC---CCCCCchhHHHHH
Q 003937 486 IVALAQHGLGEEAIQLFERMLEL----GIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVH---KIKPTPSHFASMV 557 (785)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li 557 (785)
...|...|++++|++.|++..+. +-.+. ..++..+..++...|++++|...+++..+.. +.+.....+..+.
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 268 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS 268 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence 99999999999999999988762 11111 2377888889999999999999999886511 2222366788889
Q ss_pred HHHhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 558 DLLGRAGLLQEAYNFIENM----PL--EPD-VVAWGSLLSACRVHKN---LDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
..|.+.|++++|.+.+++. +. .|. ...+..+...+...++ .++|...+++.. ..|.....+..++..|.
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHH
Confidence 9999999999999999886 11 233 3345555555667777 777777777632 22334457788999999
Q ss_pred hcCChHHHHHHHHHHHh
Q 003937 628 SCGKWEDAANIRKSMKY 644 (785)
Q Consensus 628 ~~g~~~~a~~~~~~m~~ 644 (785)
..|++++|...+++..+
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 99999999999998753
No 83
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.94 E-value=9.7e-09 Score=102.95 Aligned_cols=222 Identities=17% Similarity=0.206 Sum_probs=155.7
Q ss_pred hccCchHHHHHHHHHHHHh-------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc-------C--C-ChhHHHHH
Q 003937 423 SSLASLDHGKQIHASALRS-------GEASSLSVSNALITMYSKAGNINAARRVFNLIHW-------R--Q-ETVSWTSM 485 (785)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~--p-~~~~~~~l 485 (785)
...|+++.|...+...++. ..+....++..+...|...|++++|...|++... . | ...+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888877663 2233467788899999999999999999987631 1 1 34568889
Q ss_pred HHHHHHcCChHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcC-----CCCC-Cchh
Q 003937 486 IVALAQHGLGEEAIQLFERMLEL------GIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVH-----KIKP-TPSH 552 (785)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p-~~~~ 552 (785)
...|...|++++|++.|++..+. .-.|+ ..++..+...+...|++++|..++++..+.. .-.| ....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998874 11243 3478888889999999999999999887620 1122 2567
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHhhCCCC
Q 003937 553 FASMVDLLGRAGLLQEAYNFIENM----------PLEPD-VVAWGSLLSACRVHKN------LDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~~~~~----------~~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~p~~ 615 (785)
+..+...|.+.|++++|.+++++. ...+. ...|..+.......+. +..+...++......|..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 788899999999999999998876 12333 2344444333333332 223333333333334555
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 616 SGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 616 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
..++..++.+|...|++++|..++++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 67899999999999999999999998764
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.94 E-value=2.2e-07 Score=97.66 Aligned_cols=193 Identities=8% Similarity=-0.040 Sum_probs=114.7
Q ss_pred HHHhccCchHHHHHHHHHHHHh----CCC--C-chHHHHHHHHHHHhcCCHHHHHHHHHhccc-CC------ChhHHHHH
Q 003937 420 SVSSSLASLDHGKQIHASALRS----GEA--S-SLSVSNALITMYSKAGNINAARRVFNLIHW-RQ------ETVSWTSM 485 (785)
Q Consensus 420 ~a~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p------~~~~~~~l 485 (785)
..+...|+++.|...+....+. +.. | ....+..+...|...|++++|...+++... .+ ...+|..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 3344445555555544444332 111 1 233445566777777888888777775421 11 12456667
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHH-----HHHHHhhccCCHHHHHHHHHHhhhcCCCCCC---chhHHHH
Q 003937 486 IVALAQHGLGEEAIQLFERMLELGIKPDH-ITYV-----GVLTACTHGGLVEQGQRYYNMMKNVHKIKPT---PSHFASM 556 (785)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~-----~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 556 (785)
...+...|++++|...+++.....-.++. ..+. ..+..+...|++++|..+++..... ...+. ...+..+
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHH
Confidence 77788888888888888887653212211 1111 2223466788888888888777541 11111 1235567
Q ss_pred HHHHhhcCCHHHHHHHHHhC-------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 557 VDLLGRAGLLQEAYNFIENM-------PLEPDVV-AWGSLLSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 557 i~~~~~~g~~~~A~~~~~~~-------~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
...+...|+.++|.+.+++. +..++.. .+..+..++...|+.++|...+++++.+.+
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 77888888888888887765 1111222 455566667888999999999888887543
No 85
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.92 E-value=8.3e-09 Score=116.69 Aligned_cols=163 Identities=18% Similarity=0.218 Sum_probs=141.8
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 003937 446 SLSVSNALITMYSKAGNINAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLT 522 (785)
Q Consensus 446 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 522 (785)
+...++.|...|.+.|++++|.+.|++.. ..| +..+|+.+...|.+.|++++|++.|++.++ +.|+. ..|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 46678889999999999999999998764 333 578899999999999999999999999998 67875 58999999
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLD 599 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~ 599 (785)
++...|++++|.+.|++..+ +.|+ ...|..+..+|.+.|++++|++.|++. .+.|+ ...|..|...+...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999999876 3454 678999999999999999999999987 56675 778999999999999999
Q ss_pred HHHHHHHHHHhhCC
Q 003937 600 LGKIAAEKLLLIEP 613 (785)
Q Consensus 600 ~a~~~~~~~~~~~p 613 (785)
+|.+.+++++++.|
T Consensus 163 ~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSIVA 176 (723)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCh
Confidence 99999999988644
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.90 E-value=6.3e-08 Score=97.79 Aligned_cols=164 Identities=12% Similarity=-0.001 Sum_probs=88.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcc----cCCC----hhHHHHHHHHHHHc-CChHHHHHHHHHHHHCCCCCC------
Q 003937 449 VSNALITMYSKAGNINAARRVFNLIH----WRQE----TVSWTSMIVALAQH-GLGEEAIQLFERMLELGIKPD------ 513 (785)
Q Consensus 449 ~~~~li~~y~~~g~~~~A~~~~~~~~----~~p~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~------ 513 (785)
+++.+...|.+.|++++|...|++.. ...+ ..+|+.+...|... |++++|+..|++..+. .|+
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~ 156 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHH
Confidence 33445555555555555555554432 1111 23566666667765 7777777777776652 221
Q ss_pred -HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCc-----hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH---
Q 003937 514 -HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTP-----SHFASMVDLLGRAGLLQEAYNFIENM-PLEPDVV--- 583 (785)
Q Consensus 514 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~--- 583 (785)
..++..+...+...|++++|...|++..+...-.+.. ..|..+...+...|++++|...+++. .+.|+..
T Consensus 157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~ 236 (292)
T 1qqe_A 157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence 2356666667777777777777777666421111111 13455666666777777777777666 3444321
Q ss_pred ---HHHHHHHHHH--hcCCHHHHHHHHHHHHhhCCC
Q 003937 584 ---AWGSLLSACR--VHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 584 ---~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~p~ 614 (785)
.+..++.++. ..+++++|...++++..++|.
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 2333444443 345566677766666666663
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.86 E-value=2e-07 Score=92.18 Aligned_cols=175 Identities=9% Similarity=0.008 Sum_probs=112.3
Q ss_pred HHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 466 ARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 466 A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
|...|++... .++..++..+..++...|++++|++++.+.+..|-.++. ..+..++..+.+.|+++.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5566665432 235555556667777777777777777777664432333 3566666777777777777777777764
Q ss_pred cCCCCC-----CchhHHHHHHH--HhhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-
Q 003937 543 VHKIKP-----TPSHFASMVDL--LGRAG--LLQEAYNFIENM-PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLI- 611 (785)
Q Consensus 543 ~~~~~p-----~~~~~~~li~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~- 611 (785)
..| +..+...|..+ ....| +.++|..+|+++ ...|+..+-..|+.++.+.|++++|+..++.+.+.
T Consensus 165 ---~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 ---AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp ---HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred ---cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 344 23333444433 22223 777888888777 33355333344444677788888888888877665
Q ss_pred ---------CCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 612 ---------EPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 612 ---------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+|+|+.+...++..+...|+ +|.++++++++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 47777777777777777776 778888888764
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.85 E-value=2.8e-08 Score=100.34 Aligned_cols=228 Identities=11% Similarity=0.065 Sum_probs=156.7
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHhc--cCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHh
Q 003937 395 DAVELFRSMVREGPKPNNYTLSAMLSVSSS--LASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNL 472 (785)
Q Consensus 395 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 472 (785)
+|.+++++..+. .++....| .++ .. .+++++|...+..+ ...|...|++++|...|++
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~~---~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~ 62 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KLF---SGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLK 62 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HHH---SCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hhc---CCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHH
Confidence 466667666654 23221112 222 21 22477777777655 4568889999999999986
Q ss_pred ccc----CCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHhhcc-CCHHHHHHHHH
Q 003937 473 IHW----RQE----TVSWTSMIVALAQHGLGEEAIQLFERMLELGI---KPD--HITYVGVLTACTHG-GLVEQGQRYYN 538 (785)
Q Consensus 473 ~~~----~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~a~~~~-g~~~~a~~~~~ 538 (785)
... ..+ ..+|+.+...|...|++++|+..|++..+... .+. ..++..+..++... |++++|...|+
T Consensus 63 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~ 142 (292)
T 1qqe_A 63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE 142 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 531 112 45789999999999999999999999876211 111 24788888899996 99999999999
Q ss_pred HhhhcCCCCCC----chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH--------HHHHHHHHHHHhcCCHHHHHHHH
Q 003937 539 MMKNVHKIKPT----PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDV--------VAWGSLLSACRVHKNLDLGKIAA 605 (785)
Q Consensus 539 ~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~~~~ll~~~~~~g~~~~a~~~~ 605 (785)
+..+...-..+ ..++..+...|.+.|++++|.+.+++. ...|+. ..|..+...+...|+++.|...+
T Consensus 143 ~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 222 (292)
T 1qqe_A 143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL 222 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88752111111 346788899999999999999999987 233321 15677777888999999999999
Q ss_pred HHHHhhCCCCchh-----HHHHHHHHH--hcCChHHHHHHHHHH
Q 003937 606 EKLLLIEPDNSGA-----YSALCNLYS--SCGKWEDAANIRKSM 642 (785)
Q Consensus 606 ~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m 642 (785)
+++++++|+...+ +..++..|. ..+++++|...++++
T Consensus 223 ~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 223 QEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 9999999975443 344566664 457788888877654
No 89
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.83 E-value=4.9e-09 Score=93.94 Aligned_cols=138 Identities=12% Similarity=0.002 Sum_probs=93.3
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCCH
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGLL 566 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~ 566 (785)
+...|+.++|++.+++... ..|+. ..+..+...|...|++++|.+.|++..+ +.| +...|..+...|.+.|++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCch
Confidence 3344556666666665544 23333 2455556666666666666666666654 223 355666677777777777
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 567 QEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKI-AAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 567 ~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
++|...|++. .+.| +..+|..+...+...|+.++|.+ .++++++++|+++.+|.....++...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 7777777665 4456 46678888888888888876555 4689999999999999888888888775
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.81 E-value=7.4e-08 Score=83.89 Aligned_cols=129 Identities=21% Similarity=0.283 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHH
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLL 560 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 560 (785)
.|..+...+...|++++|+.+|+++.+.. +.+..++..+...+...|++++|..+++++.+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------- 64 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------- 64 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-----------------
Confidence 45555666666666666666666665531 122334444444555555555555555544331
Q ss_pred hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHH
Q 003937 561 GRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRK 640 (785)
Q Consensus 561 ~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 640 (785)
.+.+...|..+...+...|++++|...++++++..|.+...+..++.+|...|++++|...++
T Consensus 65 -----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 65 -----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 112345566666667777777777777777777777777777777777777777777777777
Q ss_pred HHHh
Q 003937 641 SMKY 644 (785)
Q Consensus 641 ~m~~ 644 (785)
++.+
T Consensus 128 ~~~~ 131 (136)
T 2fo7_A 128 KALE 131 (136)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 7654
No 91
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.81 E-value=1.1e-07 Score=95.15 Aligned_cols=217 Identities=13% Similarity=0.114 Sum_probs=120.6
Q ss_pred CHHHHHHHHHhcCCC----CHhHHHHHHHHHHHcCChhHHHHHHHHHHHc------CCCCCHhhHHHHHHHHhccCchHH
Q 003937 361 DIGPARRIFDSLRDR----DVVAWTAMLVGYEQNGLNKDAVELFRSMVRE------GPKPNNYTLSAMLSVSSSLASLDH 430 (785)
Q Consensus 361 ~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~t~~~ll~a~~~~~~~~~ 430 (785)
.+++|.++++.+..+ ...+|..+...|...|++++|+..|++.... +-.|
T Consensus 23 ~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-------------------- 82 (283)
T 3edt_B 23 LCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP-------------------- 82 (283)
T ss_dssp HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH--------------------
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch--------------------
Confidence 355555555554332 2445666777777777777777777766543 1111
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC---------C-ChhHHHHHHHHHHHcCChHHHHH
Q 003937 431 GKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR---------Q-ETVSWTSMIVALAQHGLGEEAIQ 500 (785)
Q Consensus 431 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------p-~~~~~~~li~~~~~~g~~~~A~~ 500 (785)
....++..+...|...|++++|.+.|++.... | ...+|..+...|...|++++|+.
T Consensus 83 --------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 83 --------------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEY 148 (283)
T ss_dssp --------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 12234455555666666666666666544211 1 23456666777777777777777
Q ss_pred HHHHHHHC------CCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcC------CCCCC-chhHHHHHHHHhh----
Q 003937 501 LFERMLEL------GIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVH------KIKPT-PSHFASMVDLLGR---- 562 (785)
Q Consensus 501 ~~~~m~~~------g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~~~~li~~~~~---- 562 (785)
.|++..+. +-.|+. .++..+..++...|++++|..++++..+.. ...+. ...+..+...+..
T Consensus 149 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (283)
T 3edt_B 149 YYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKR 228 (283)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCch
Confidence 77776653 113332 366667777777777777777777665420 11222 2223333333222
Q ss_pred --cCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 563 --AGLLQEAYNFIENMP-LEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 563 --~g~~~~A~~~~~~~~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
...+.++...++... ..|+ ..+|..+...+...|++++|...++++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 229 RDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 223455555555553 2233 457788888899999999999999998764
No 92
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.81 E-value=3.6e-07 Score=87.19 Aligned_cols=174 Identities=9% Similarity=-0.100 Sum_probs=135.4
Q ss_pred HHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccC----CHHHHHHHHHHh
Q 003937 465 AARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGG----LVEQGQRYYNMM 540 (785)
Q Consensus 465 ~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g----~~~~a~~~~~~m 540 (785)
+|.+.|++.....++.++..+...|...+++++|++.|++..+.| +...+..+...+.. + ++++|..+|++.
T Consensus 4 eA~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 455666665555578888888888888888888888888888754 45566666667776 6 788888888887
Q ss_pred hhcCCCCCCchhHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 003937 541 KNVHKIKPTPSHFASMVDLLGR----AGLLQEAYNFIENM-PLEPD---VVAWGSLLSACRV----HKNLDLGKIAAEKL 608 (785)
Q Consensus 541 ~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~ 608 (785)
.+ . -+...+..|..+|.. .+++++|.++|++. ...|+ +..+..|...|.. .++.++|...++++
T Consensus 80 ~~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 80 VE-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HH-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HH-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 65 2 355667777777776 78899999999887 33443 6788888888877 78999999999999
Q ss_pred HhhCCCCchhHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCCC
Q 003937 609 LLIEPDNSGAYSALCNLYSSC-G-----KWEDAANIRKSMKYVGV 647 (785)
Q Consensus 609 ~~~~p~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~g~ 647 (785)
.+. |.++..+..|+.+|... | ++++|..++++..+.|.
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 988 55778899999999765 3 89999999999887764
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.81 E-value=1.1e-07 Score=94.33 Aligned_cols=184 Identities=15% Similarity=0.022 Sum_probs=125.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcccC-CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHH
Q 003937 446 SLSVSNALITMYSKAGNINAARRVFNLIHWR-QE----TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD----HIT 516 (785)
Q Consensus 446 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t 516 (785)
+...+-.+...+.+.|++++|...|+++... |+ ...|..+..+|.+.|++++|+..|++..+. .|+ ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence 3445555666777888888888888876432 33 456777777888888888888888888773 342 235
Q ss_pred HHHHHHHhhc--------cCCHHHHHHHHHHhhhcCCCCCC-chhH-----------------HHHHHHHhhcCCHHHHH
Q 003937 517 YVGVLTACTH--------GGLVEQGQRYYNMMKNVHKIKPT-PSHF-----------------ASMVDLLGRAGLLQEAY 570 (785)
Q Consensus 517 ~~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~-~~~~-----------------~~li~~~~~~g~~~~A~ 570 (785)
+..+..++.. .|++++|...|+++.+.. |+ .... ..+...|.+.|++++|.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 168 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAA 168 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 5566666666 788888888888877532 33 2222 45577888999999999
Q ss_pred HHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhhCCCCch---hHHHHHHHHHhcCCh
Q 003937 571 NFIENM-PLEPD----VVAWGSLLSACRVH----------KNLDLGKIAAEKLLLIEPDNSG---AYSALCNLYSSCGKW 632 (785)
Q Consensus 571 ~~~~~~-~~~p~----~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~ 632 (785)
..|++. ...|+ ...+..+..++... |++++|...++++++..|+++. +...+..++...|++
T Consensus 169 ~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 169 VTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp HHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHh
Confidence 988887 22343 34666677777655 8889999999999999997754 344445555444444
Q ss_pred HH
Q 003937 633 ED 634 (785)
Q Consensus 633 ~~ 634 (785)
++
T Consensus 249 ~~ 250 (261)
T 3qky_A 249 EG 250 (261)
T ss_dssp HT
T ss_pred hh
Confidence 43
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.80 E-value=2.7e-07 Score=91.44 Aligned_cols=189 Identities=10% Similarity=0.052 Sum_probs=146.5
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chh
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD----HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSH 552 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~ 552 (785)
+...+-.+...+.+.|++++|+..|+++.+. .|+ ...+..+..++...|++++|...|+...+...-.|. ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 5667777888899999999999999999984 454 457788888999999999999999999874322223 445
Q ss_pred HHHHHHHHhh--------cCCHHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHhcCCHHHHHHHH
Q 003937 553 FASMVDLLGR--------AGLLQEAYNFIENM-PLEPD-VVAW-----------------GSLLSACRVHKNLDLGKIAA 605 (785)
Q Consensus 553 ~~~li~~~~~--------~g~~~~A~~~~~~~-~~~p~-~~~~-----------------~~ll~~~~~~g~~~~a~~~~ 605 (785)
+..+...|.+ .|++++|.+.|++. ...|+ ...+ ..+...+...|+++.|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 6677888888 99999999999887 23343 2333 44566789999999999999
Q ss_pred HHHHhhCCCCc---hhHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCC
Q 003937 606 EKLLLIEPDNS---GAYSALCNLYSSC----------GKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLH 672 (785)
Q Consensus 606 ~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (785)
+++++..|+++ ..+..++.+|... |++++|...+++..+... .+
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-----------------------~~ 228 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-----------------------DS 228 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----------------------TC
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----------------------CC
Confidence 99999999744 4788899999877 999999999999876422 13
Q ss_pred cchHHHHHHHHHHHHHHHH
Q 003937 673 PQRDAIYNKMAKIWDEIKE 691 (785)
Q Consensus 673 ~~~~~~~~~~~~l~~~~~~ 691 (785)
|...+....+.++...+.+
T Consensus 229 ~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 229 PLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666654
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.79 E-value=2.6e-07 Score=89.20 Aligned_cols=182 Identities=12% Similarity=-0.014 Sum_probs=122.4
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhccc-CCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH----HH
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIHW-RQE----TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI----TY 517 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~ 517 (785)
...+..+...+.+.|++++|...|+++.. .|+ ...+..+..+|.+.|++++|+..|++..+ ..|+.. .+
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~ 81 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVM 81 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHH
Confidence 34455667778889999999999988753 233 24677788889999999999999999887 355542 33
Q ss_pred HHHHHHhhc------------------cCCHHHHHHHHHHhhhcCCCCCCc-hhHHHHHHHHhhcCCHHHHHHHHHhCCC
Q 003937 518 VGVLTACTH------------------GGLVEQGQRYYNMMKNVHKIKPTP-SHFASMVDLLGRAGLLQEAYNFIENMPL 578 (785)
Q Consensus 518 ~~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~ 578 (785)
..+..++.. .|++++|...|+++.+. .|+. ..+.+... .+.+....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~----l~~~~~~~-------- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKR----LVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHH----HHHHHHHH--------
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHH----HHHHHHHH--------
Confidence 334444433 35566666666666542 2332 11111111 00000000
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 003937 579 EPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS---GAYSALCNLYSSCGKWEDAANIRKSMKYVGVK 648 (785)
Q Consensus 579 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 648 (785)
......+...+...|+++.|...++++++..|+++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00112445567899999999999999999999875 56889999999999999999999999876553
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.77 E-value=1.6e-07 Score=81.76 Aligned_cols=124 Identities=17% Similarity=0.234 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhc
Q 003937 449 VSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTH 526 (785)
Q Consensus 449 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~ 526 (785)
.+..+...|...|++++|..+|+++.. +.+...|..+...+...|++++|+..|+++.+.+ +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 467788999999999999999998742 2367789999999999999999999999998853 2345577777778888
Q ss_pred cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHh
Q 003937 527 GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIEN 575 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 575 (785)
.|++++|..+++.+.+. .+.+...+..+...|.+.|++++|.+.+++
T Consensus 82 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 88888888888777641 112233344444444444444444444433
No 97
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.76 E-value=1.3e-07 Score=95.07 Aligned_cols=161 Identities=8% Similarity=-0.052 Sum_probs=127.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASM 556 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 556 (785)
+...+..+...+...|++++|+..|++..+ ..|+. ..+..+..++...|++++|...++.+.. ..|+.......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~~ 190 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL---QDQDTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG---GGCSHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch---hhcchHHHHHH
Confidence 455666777778888999999999999888 46654 4777788888899999999999887764 34554433322
Q ss_pred H-HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCC
Q 003937 557 V-DLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN--SGAYSALCNLYSSCGK 631 (785)
Q Consensus 557 i-~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~ 631 (785)
. ..+.+.|+.++|.+.+++. ...| +...+..+...+...|+.++|...++++++.+|++ ...+..|+.+|...|+
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 2 2356677777788877776 3455 57788999999999999999999999999999987 7899999999999999
Q ss_pred hHHHHHHHHHHH
Q 003937 632 WEDAANIRKSMK 643 (785)
Q Consensus 632 ~~~a~~~~~~m~ 643 (785)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 999998887654
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.72 E-value=2.6e-08 Score=113.27 Aligned_cols=147 Identities=12% Similarity=-0.069 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHH
Q 003937 479 TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASM 556 (785)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 556 (785)
...|..+...|...|++++|++.|++..+ ..|+. ..+..+..++...|++++|...|++..+ +.| +...+..+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~~~~~l 507 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLD---TFPGELAPKLAL 507 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HSTTCSHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHHHH
Confidence 34455555555555555555555555555 23332 3455555555555555555555555543 122 24445555
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 557 VDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 557 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
...|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...++++++++|++..++..++.+|...|+
T Consensus 508 g~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 508 AATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 555555555555 5555544 2333 344555555555566666666666666666666555555555555544443
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.72 E-value=1.2e-06 Score=86.68 Aligned_cols=180 Identities=11% Similarity=0.014 Sum_probs=124.5
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhc-ccCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 003937 431 GKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLI-HWRQ---ETVSWTSMIVALAQHGLGEEAIQLFERML 506 (785)
Q Consensus 431 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 506 (785)
+...++..+..+ +++......+..+|...|++++|++++.+. ...| +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344444444433 344444457778888889999999998876 3222 45667778888999999999999999998
Q ss_pred HCCCCC-----CHHHHHHHHHH--hhc--cCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-
Q 003937 507 ELGIKP-----DHITYVGVLTA--CTH--GGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM- 576 (785)
Q Consensus 507 ~~g~~p-----~~~t~~~ll~a--~~~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~- 576 (785)
+ ..| +..+...+..+ ... .+.+.+|..+|+++... .|+......+..++.+.|++++|.+.++.+
T Consensus 164 ~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 N--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp H--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred h--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8 577 35555555555 222 34889999999998753 344333344555788899999999988765
Q ss_pred CC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 577 PL----------EP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 577 ~~----------~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
.. .| |+.+...++......|+ .|.++++++.+..|+++..
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 11 25 45566566666566676 8899999999999988754
No 100
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.66 E-value=3.6e-05 Score=83.29 Aligned_cols=125 Identities=10% Similarity=-0.008 Sum_probs=92.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHh-hccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTAC-THGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD 558 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~-~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 558 (785)
..|...+..+.+.+..+.|..+|++. +. ..++...|......- ...++.+.|..+|+...+..+ .+...+...++
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid 362 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFL 362 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHH
Confidence 45777777777788899999999998 32 112333443222211 123469999999999887442 23455677888
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 559 LLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
...+.|+.+.|..+|++.. .....|...+.--..+|+.+.+..++++..+
T Consensus 363 ~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 363 FLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8899999999999999983 3577899999888899999999999998875
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.66 E-value=4.6e-08 Score=87.54 Aligned_cols=122 Identities=11% Similarity=-0.031 Sum_probs=101.7
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHK 596 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g 596 (785)
|...+...|++++|+..+..... ..|+ ...+-.+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34456778899999999987754 3343 445667889999999999999999988 5566 5789999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHH-HHHHHh
Q 003937 597 NLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANI-RKSMKY 644 (785)
Q Consensus 597 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 644 (785)
++++|+..++++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987765 476654
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.65 E-value=1.8e-07 Score=104.51 Aligned_cols=160 Identities=13% Similarity=0.038 Sum_probs=123.5
Q ss_pred cCCHHHHHHHHHhcccC-C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHH
Q 003937 460 AGNINAARRVFNLIHWR-Q-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRY 536 (785)
Q Consensus 460 ~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~ 536 (785)
.|++++|.+.|++.... | +...|..+...|...|++++|++.|++..+ ..|+ ..++..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47899999999886432 3 577899999999999999999999999998 4665 46888899999999999999999
Q ss_pred HHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhh
Q 003937 537 YNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH---KNLDLGKIAAEKLLLI 611 (785)
Q Consensus 537 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~ 611 (785)
+++..+. -+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+... |+.++|...++++++.
T Consensus 80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9998862 2334678889999999999999999999987 4455 477888899999999 9999999999999999
Q ss_pred CCCCchhHHHHH
Q 003937 612 EPDNSGAYSALC 623 (785)
Q Consensus 612 ~p~~~~~~~~l~ 623 (785)
+|++...|..+.
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 998888887766
No 103
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.65 E-value=1.5e-07 Score=83.86 Aligned_cols=101 Identities=9% Similarity=-0.070 Sum_probs=89.2
Q ss_pred CCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHH
Q 003937 545 KIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSA 621 (785)
Q Consensus 545 ~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 621 (785)
.+.|+ ...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 34454 556777888899999999999999888 4556 57899999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 003937 622 LCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 622 l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
++.+|...|++++|...+++..+.
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.65 E-value=1.4e-07 Score=87.14 Aligned_cols=156 Identities=11% Similarity=0.045 Sum_probs=93.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHH-Hh
Q 003937 484 SMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDL-LG 561 (785)
Q Consensus 484 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~ 561 (785)
.+...+...|++++|+..|++..+ ..|+. ..+..+..++...|++++|...++...+ ..|+...+..+... +.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~---~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPL---EYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG---GGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh---ccCChHHHHHHHHHHHH
Confidence 333444455555555555555444 23332 3444444455555555555555554432 12222211111111 11
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC--chhHHHHHHHHHhcCChHHHHH
Q 003937 562 RAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN--SGAYSALCNLYSSCGKWEDAAN 637 (785)
Q Consensus 562 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~ 637 (785)
+.+...+|.+.+++. ...| +...|..+...+...|++++|...++++++.+|+. +..+..++.+|...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 111122345555554 3356 47788888889999999999999999999999864 5589999999999999999999
Q ss_pred HHHHHHh
Q 003937 638 IRKSMKY 644 (785)
Q Consensus 638 ~~~~m~~ 644 (785)
.+++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887643
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.63 E-value=5.1e-07 Score=85.82 Aligned_cols=154 Identities=11% Similarity=0.063 Sum_probs=111.6
Q ss_pred HHHHhcCCHHHHHHHHHhccc-CC-ChhHHHH----------------HHHHHHHcCChHHHHHHHHHHHHCCCCCCH-H
Q 003937 455 TMYSKAGNINAARRVFNLIHW-RQ-ETVSWTS----------------MIVALAQHGLGEEAIQLFERMLELGIKPDH-I 515 (785)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~~~~-~p-~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~ 515 (785)
..+...|++++|...|++... .| +...|.. +...|.+.|++++|+..|++..+ +.|+. .
T Consensus 12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 89 (208)
T 3urz_A 12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVD 89 (208)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHH
Confidence 345566777777777766532 22 2334444 88889999999999999999998 56754 5
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHhhcCC--HHHHHHHHHhCCCCCCHH--HHHHHHH
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLGRAGL--LQEAYNFIENMPLEPDVV--AWGSLLS 590 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~--~~~A~~~~~~~~~~p~~~--~~~~ll~ 590 (785)
.+..+..++...|++++|...|++..+ +.|+ ...+..+...|...|. .+++...++... .|+.. .|..+..
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHH
Confidence 888888899999999999999999886 3444 6678888888766654 445566666653 44433 4445555
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCC
Q 003937 591 ACRVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 591 ~~~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
++...|++++|+..+++++++.|+
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHccCHHHHHHHHHHHHHhCCC
Confidence 677789999999999999999994
No 106
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.58 E-value=1.1e-06 Score=99.93 Aligned_cols=189 Identities=12% Similarity=0.069 Sum_probs=143.3
Q ss_pred hccCchHHHHHHHHHHHH-------hCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhccc--CCChhHHHHHHHHHHHcC
Q 003937 423 SSLASLDHGKQIHASALR-------SGEASSLSVSNALITMYSKAGNINAARRVFNLIHW--RQETVSWTSMIVALAQHG 493 (785)
Q Consensus 423 ~~~~~~~~a~~~~~~~~~-------~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g 493 (785)
...+++++|.+.+..+.+ ...+.+...+..+...|.+.|++++|.+.|++... ..+...|..+...|...|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g 481 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG 481 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence 667777777777777761 12244566778888899999999999999988752 236778999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCCHHHHHH
Q 003937 494 LGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGLLQEAYN 571 (785)
Q Consensus 494 ~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~ 571 (785)
++++|++.|++..+ +.|+. ..+..+..++...|++++ ...|++..+ +.| +...|..+..+|.+.|++++|.+
T Consensus 482 ~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 482 DYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWS---TNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp CHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH---hCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998 56754 578888889999999999 999998876 234 46788899999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhhCCCCch
Q 003937 572 FIENM-PLEPD-VVAWGSLLSACRVHKN-----LDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 572 ~~~~~-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 617 (785)
.|++. .+.|+ ...|..+..++...++ .+...++.+.+..+.+.++.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 99998 57786 5577777777655554 34444455555555554444
No 107
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.56 E-value=3.7e-07 Score=78.63 Aligned_cols=108 Identities=14% Similarity=0.063 Sum_probs=65.2
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACR 593 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 593 (785)
.+......+.+.|++++|...|++..+. -+.+...|..+...|.+.|++++|++.+++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4555555566666666666666655541 1223445555566666666666666666554 3344 3556667777777
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 594 VHKNLDLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 594 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
..|++++|+..++++++++|++...+..|.++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 77777777777777777777776666555543
No 108
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.55 E-value=2.1e-06 Score=87.14 Aligned_cols=221 Identities=12% Similarity=0.043 Sum_probs=155.4
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHH
Q 003937 390 NGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRV 469 (785)
Q Consensus 390 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 469 (785)
.|++++|.+++++..+... .. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 5678899999988765321 11 0 11146777777776543 5568889999999998
Q ss_pred HHhccc----CCC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHhhccCCHHHHHHH
Q 003937 470 FNLIHW----RQE----TVSWTSMIVALAQHGLGEEAIQLFERMLELG---IKPD--HITYVGVLTACTHGGLVEQGQRY 536 (785)
Q Consensus 470 ~~~~~~----~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~--~~t~~~ll~a~~~~g~~~~a~~~ 536 (785)
|.+... ..+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...+.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 886531 112 3468888899999999999999999876521 1222 2477888888988 999999999
Q ss_pred HHHhhhcCCCCCC----chhHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 003937 537 YNMMKNVHKIKPT----PSHFASMVDLLGRAGLLQEAYNFIENM-PL---EPD----VVAWGSLLSACRVHKNLDLGKIA 604 (785)
Q Consensus 537 ~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~ 604 (785)
|++..+...-..+ ..++..+...|.+.|++++|.+.|++. .+ .++ ...|..+...+...|+++.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9987652211111 456788899999999999999999887 11 122 22566666677788999999999
Q ss_pred HHHHHhhCCCCchh-----HHHHHHHHHhcCChHHHHHH
Q 003937 605 AEKLLLIEPDNSGA-----YSALCNLYSSCGKWEDAANI 638 (785)
Q Consensus 605 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~~ 638 (785)
+++++ +.|....+ ...++..| ..|+.+++..+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 99865432 34455555 56777666553
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.54 E-value=6.9e-07 Score=99.66 Aligned_cols=147 Identities=12% Similarity=0.011 Sum_probs=91.2
Q ss_pred cCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccC-C-ChhHHHHHHHHHHHcCChHHHHHHH
Q 003937 425 LASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWR-Q-ETVSWTSMIVALAQHGLGEEAIQLF 502 (785)
Q Consensus 425 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~ 502 (785)
.|++++|...+..+.+.. +.+...+..+...|.+.|++++|.+.|++.... | +...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356777777777766542 334666777777788888888888888765422 2 4667777777788888888888888
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc---CCHHHHHHHHHhC
Q 003937 503 ERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA---GLLQEAYNFIENM 576 (785)
Q Consensus 503 ~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 576 (785)
++..+ ..|+ ...+..+..++...|++++|.+.+++..+. .+.+...+..+...|.+. |+.++|.+.+++.
T Consensus 81 ~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 88777 3454 457777777778888888888888777652 123355677777777777 8888888777766
No 110
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.54 E-value=5.3e-07 Score=85.69 Aligned_cols=160 Identities=13% Similarity=0.063 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH-HHHH----------------HHHHhhccCCHHHHHHHHHHhhhc
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI-TYVG----------------VLTACTHGGLVEQGQRYYNMMKNV 543 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~~ 543 (785)
.+-.....+...|++++|+..|++..+ ..|+.. .+.. +..++...|++++|...|++..+.
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344455667889999999999999998 577654 5666 788899999999999999998862
Q ss_pred CCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhhCCCCchhH
Q 003937 544 HKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKN--LDLGKIAAEKLLLIEPDNSGAY 619 (785)
Q Consensus 544 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~p~~~~~~ 619 (785)
-+.+...+..+...|...|++++|.+.|++. .+.| +..+|..+...+...|+ .+.+...++++....| ....+
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~ 160 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYAR 160 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHH
Confidence 2334778899999999999999999999988 4566 47788888888765543 3455566666554333 22345
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 620 SALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 620 ~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
..++.++...|++++|...+++..+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 66777888899999999999998754
No 111
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.54 E-value=2.7e-07 Score=82.15 Aligned_cols=96 Identities=10% Similarity=0.006 Sum_probs=84.3
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 455667778888999999999988887 3455 67788889999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 003937 628 SCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 628 ~~g~~~~a~~~~~~m~~~ 645 (785)
..|++++|...+++..+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988654
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.53 E-value=3.7e-07 Score=78.64 Aligned_cols=100 Identities=9% Similarity=0.106 Sum_probs=89.1
Q ss_pred CCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 546 IKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 546 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
+.|+ ...+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 4454 345677888999999999999999987 4556 578999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 003937 623 CNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 623 ~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998763
No 113
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.52 E-value=3.5e-06 Score=84.89 Aligned_cols=164 Identities=10% Similarity=-0.037 Sum_probs=118.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC----c
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-----ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT----P 550 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~ 550 (785)
..+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|...+++..+...-..+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34555677778888888888888887774322111 12334555667788899999888877642111111 3
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC------C
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM----PLEPD-----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD------N 615 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~------~ 615 (785)
..++.+...|...|++++|.+.+++. ...|+ ..+|..+...|...|++++|...+++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47788888899999999998888775 11222 257888888999999999999999999886432 1
Q ss_pred chhHHHHHHHHHhcCChHHH-HHHHHHHH
Q 003937 616 SGAYSALCNLYSSCGKWEDA-ANIRKSMK 643 (785)
Q Consensus 616 ~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 643 (785)
..+|..++.+|...|++++| ...+++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 56788999999999999999 77777764
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.52 E-value=2.3e-06 Score=82.41 Aligned_cols=183 Identities=13% Similarity=-0.005 Sum_probs=130.0
Q ss_pred hHHHHHHHHhccCchHHHHHHHHHHHHhCCCC--chHHHHHHHHHHHhcCCHHHHHHHHHhccc-CCChh----HHHHHH
Q 003937 414 TLSAMLSVSSSLASLDHGKQIHASALRSGEAS--SLSVSNALITMYSKAGNINAARRVFNLIHW-RQETV----SWTSMI 486 (785)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~p~~~----~~~~li 486 (785)
.+-.....+...|++++|...+..+++..... ....+..+...|.+.|++++|...|++... .|+.. .|..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 44455667888999999999999999874322 245677889999999999999999998742 34322 455555
Q ss_pred HHHHH------------------cCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCC
Q 003937 487 VALAQ------------------HGLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIK 547 (785)
Q Consensus 487 ~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 547 (785)
.++.. .|+.++|+..|++..+ ..|+.. ....... ...+...+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~----------l~~~~~~~~~----- 148 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKR----------LVFLKDRLAK----- 148 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHH----------HHHHHHHHHH-----
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHH----------HHHHHHHHHH-----
Confidence 55544 5789999999999998 467764 2222111 0011111111
Q ss_pred CCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 003937 548 PTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPDV----VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 548 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 617 (785)
..-.+...|.+.|++++|...|+++ ...|+. ..+..+..++.+.|+.++|...++++....|++..
T Consensus 149 ----~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 149 ----YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 1234667889999999999999887 334442 46888888999999999999999999998886543
No 115
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.52 E-value=2e-05 Score=85.23 Aligned_cols=169 Identities=13% Similarity=-0.005 Sum_probs=108.2
Q ss_pred HHHHHHHHhccc--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 464 NAARRVFNLIHW--RQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 464 ~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
+.+..+|++... +.+...|-..+.-+.+.|+.++|..+|++.... |+...+......+...+ +. ++.+.
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~~e~~---~~---~~~l~ 266 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLVMDEE---AV---YGDLK 266 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHTTCT---HH---HHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhhcchh---HH---HHHHH
Confidence 345667776542 235677888888888899999999999999985 65543222111111111 11 22222
Q ss_pred hcC---C-----C---CCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHH-HHhcCCHHHHHHHHHH
Q 003937 542 NVH---K-----I---KPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEP--DVVAWGSLLSA-CRVHKNLDLGKIAAEK 607 (785)
Q Consensus 542 ~~~---~-----~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p--~~~~~~~ll~~-~~~~g~~~~a~~~~~~ 607 (785)
+.. . . ......|...++.+.+.|.++.|.++|++.. .| +...|-..... +...++.+.|..+++.
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~-~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 267 RKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG-NEGVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp HHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhh-CCCCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 111 0 0 0112456667777777888999999998883 33 23344322222 2233468999999999
Q ss_pred HHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 608 LLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 608 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
+++..|+++..+...++...+.|+.+.|..++++.
T Consensus 346 al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99988877777777788888899999999988886
No 116
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.48 E-value=1.5e-05 Score=80.31 Aligned_cols=159 Identities=11% Similarity=-0.027 Sum_probs=114.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC----chhHHH
Q 003937 485 MIVALAQHGLGEEAIQLFERMLELG-IKPDHI----TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT----PSHFAS 555 (785)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 555 (785)
.+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...+++..+...-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4566778888888888888877632 122211 2334555667777888888888887752222222 225788
Q ss_pred HHHHHhhcCCHHHHHHHHHhCC-------C-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHH
Q 003937 556 MVDLLGRAGLLQEAYNFIENMP-------L-EPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN------SGAYS 620 (785)
Q Consensus 556 li~~~~~~g~~~~A~~~~~~~~-------~-~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 620 (785)
+...|...|++++|.+.++++- . .|. ..+|..+...|...|++++|...+++++++.+.. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8888888888888888877761 1 122 3378888889999999999999999999865432 56899
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHH
Q 003937 621 ALCNLYSSCGK-WEDAANIRKSMK 643 (785)
Q Consensus 621 ~l~~~~~~~g~-~~~a~~~~~~m~ 643 (785)
.++.+|.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999998875
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.47 E-value=2.7e-06 Score=81.02 Aligned_cols=125 Identities=10% Similarity=0.008 Sum_probs=97.5
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 003937 517 YVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRV 594 (785)
Q Consensus 517 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 594 (785)
+..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3344555666777777777776542 456667777777777777777777777766 2334 56788888888999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCc----------------hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 595 HKNLDLGKIAAEKLLLIEPDNS----------------GAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
.|++++|...++++++..|++. ..+..++.+|...|++++|...+++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999888777 889999999999999999999999987653
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.46 E-value=9.7e-06 Score=77.08 Aligned_cols=173 Identities=10% Similarity=-0.074 Sum_probs=129.3
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcC----ChHHHHHHHHHHH
Q 003937 431 GKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHG----LGEEAIQLFERML 506 (785)
Q Consensus 431 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 506 (785)
|.+.+....+.| +...+..|..+|...+++++|.+.|++.....+...+..|...|.. + +.++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344445555443 5556677778888888999999999887666678888888888877 6 8899999999987
Q ss_pred HCCCCCCHHHHHHHHHHhhc----cCCHHHHHHHHHHhhhcCCCCCC---chhHHHHHHHHhh----cCCHHHHHHHHHh
Q 003937 507 ELGIKPDHITYVGVLTACTH----GGLVEQGQRYYNMMKNVHKIKPT---PSHFASMVDLLGR----AGLLQEAYNFIEN 575 (785)
Q Consensus 507 ~~g~~p~~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~----~g~~~~A~~~~~~ 575 (785)
+.| +...+..+...+.. .+++++|..+|++..+ . .|. +..+..|..+|.. .++.++|.++|++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~--~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-D--SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-S--TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-c--CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 754 45566677777776 7889999999988875 2 332 6677788888887 7889999999988
Q ss_pred C-CCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhCC
Q 003937 576 M-PLEPDVVAWGSLLSACRVH-K-----NLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 576 ~-~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~~~~~~~~~~p 613 (785)
. ...++...+..|...|... | +.++|...++++.+...
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7 3334566777777776543 3 89999999999988754
No 119
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.43 E-value=7e-07 Score=89.36 Aligned_cols=191 Identities=8% Similarity=-0.044 Sum_probs=132.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 003937 446 SLSVSNALITMYSKAGNINAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLT 522 (785)
Q Consensus 446 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~ 522 (785)
+...+..+...|.+.|++++|...|++.. ..| +...|..+...|...|++++|+..+++..+ +.|+. ..+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 34556677788888999999999998764 233 677888899999999999999999999887 46654 57888888
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCc-hhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTP-SHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLG 601 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 601 (785)
++...|++++|...|+...+. .|+. ..+...+....+.+....... .......++......+ ..+. .|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l-~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYL-TRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHH-HHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHH-HHHH-HHHHHHH
Confidence 999999999999999887652 2221 111112222222221112112 2222333344443333 3333 6889999
Q ss_pred HHHHHHHHhhCCCCchhHHHHHHHHHhc-CChHHHHHHHHHHHh
Q 003937 602 KIAAEKLLLIEPDNSGAYSALCNLYSSC-GKWEDAANIRKSMKY 644 (785)
Q Consensus 602 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 644 (785)
...++++++++|++......+...+.+. +++++|.++|.++.+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999998877777777777776 789999999998864
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.43 E-value=1.5e-06 Score=79.95 Aligned_cols=155 Identities=9% Similarity=-0.049 Sum_probs=112.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-hhcc
Q 003937 451 NALITMYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTA-CTHG 527 (785)
Q Consensus 451 ~~li~~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a-~~~~ 527 (785)
..+...+.+.|++++|...|++.... .+...|..+...|...|++++|+..|++... ..|+...+...... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChHHHHHHHHHHHHhh
Confidence 45566788889999999999886522 3677888888999999999999999988876 34544322222111 1122
Q ss_pred CCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 003937 528 GLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD---VVAWGSLLSACRVHKNLDLGK 602 (785)
Q Consensus 528 g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~ 602 (785)
+...+|...+++..+ ..| +...+..+...|.+.|++++|.+.++++ ...|+ ...|..+...+...|+.++|.
T Consensus 88 ~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 88 AAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred cccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222346777777765 345 4677888889999999999999999887 45554 557888888999999999999
Q ss_pred HHHHHHHh
Q 003937 603 IAAEKLLL 610 (785)
Q Consensus 603 ~~~~~~~~ 610 (785)
..+++.+.
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988764
No 121
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=2.3e-06 Score=75.44 Aligned_cols=96 Identities=10% Similarity=-0.029 Sum_probs=83.1
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
...+..+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 444556677788889999999988887 3455 57788889899999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 003937 628 SCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 628 ~~g~~~~a~~~~~~m~~~ 645 (785)
..|++++|...+++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999988653
No 122
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.39 E-value=3.8e-05 Score=76.74 Aligned_cols=179 Identities=14% Similarity=0.143 Sum_probs=106.9
Q ss_pred CHHHHHHHHHhccc-CC-ChhHHHHHHHHH----HHc---CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHH
Q 003937 462 NINAARRVFNLIHW-RQ-ETVSWTSMIVAL----AQH---GLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVE 531 (785)
Q Consensus 462 ~~~~A~~~~~~~~~-~p-~~~~~~~li~~~----~~~---g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~ 531 (785)
+++++++.++.+.. .| +...|+.--..+ ... +++++++++++++.+ ..| |..+|..-...+.+.|.++
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~ 161 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHN 161 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTT
T ss_pred cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccC
Confidence 56666666655431 11 344455433333 333 566677777777766 334 3345555555555566665
Q ss_pred --HHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HH
Q 003937 532 --QGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGL------LQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNL-DL 600 (785)
Q Consensus 532 --~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~-~~ 600 (785)
++.++++.+.+. -.-|...|+.-..++.+.|. ++++++.++++ ...| |...|+-+...+.+.|+. +.
T Consensus 162 ~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~ 239 (306)
T 3dra_A 162 DAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQ 239 (306)
T ss_dssp CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGG
T ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHH
Confidence 666666666642 12334445444444555554 67777777665 3344 567777777777666663 34
Q ss_pred HHHHHHHHHhhC---CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 601 GKIAAEKLLLIE---PDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 601 a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
...+++++.+++ |.++.+...++.+|.+.|+.++|.++++.+.+
T Consensus 240 ~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 240 LEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 556667666655 66777777888888888888888888887764
No 123
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.38 E-value=3.7e-06 Score=71.69 Aligned_cols=113 Identities=19% Similarity=0.258 Sum_probs=72.3
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACR 593 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 593 (785)
++..+...+...|++++|..+++++.+. .+.+...+..+...|.+.|++++|..+++++ ...| +..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 3444444455555555555555554431 1223444555556666666666666666555 2223 5667778888888
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcC
Q 003937 594 VHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCG 630 (785)
Q Consensus 594 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 630 (785)
..|+++.|...++++++..|+++..+..+..++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8899999999999999989988888888877776544
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.37 E-value=4.6e-06 Score=75.55 Aligned_cols=124 Identities=10% Similarity=0.038 Sum_probs=82.3
Q ss_pred HHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 003937 518 VGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH 595 (785)
Q Consensus 518 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~ 595 (785)
..+...+...|++++|...|+...+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+...
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 33344444455555555555544431 1123444555555666666666666666554 2233 466788888888999
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHH--HHHHHhcCChHHHHHHHHHHH
Q 003937 596 KNLDLGKIAAEKLLLIEPDNSGAYSAL--CNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~~~~~~~l--~~~~~~~g~~~~a~~~~~~m~ 643 (785)
|++++|...+++++++.|++...+..+ +..+...|++++|...+....
T Consensus 95 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 95 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999999999999999888777444 444888899999999988764
No 125
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.37 E-value=8.1e-06 Score=81.84 Aligned_cols=123 Identities=11% Similarity=0.050 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccc-CCChhHHHHH-HHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhh
Q 003937 449 VSNALITMYSKAGNINAARRVFNLIHW-RQETVSWTSM-IVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACT 525 (785)
Q Consensus 449 ~~~~li~~y~~~g~~~~A~~~~~~~~~-~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~ 525 (785)
.+..|...|.+.|++++|...|+++.. .|+...+... ...+...++.++|+..|++..+ ..|+. ..+..+..++.
T Consensus 153 a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~ 230 (287)
T 3qou_A 153 IGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLH 230 (287)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 334445555555555555555555432 2332222111 1123444445555555555554 23332 34444445555
Q ss_pred ccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHH
Q 003937 526 HGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFI 573 (785)
Q Consensus 526 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 573 (785)
..|++++|...+..+.+...-..+...+..++..|...|+.++|...+
T Consensus 231 ~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~ 278 (287)
T 3qou_A 231 QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXY 278 (287)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHH
Confidence 555555555555554431111111233444444444444444444333
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.36 E-value=8.4e-06 Score=77.50 Aligned_cols=144 Identities=6% Similarity=-0.076 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccC
Q 003937 450 SNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGG 528 (785)
Q Consensus 450 ~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g 528 (785)
+..+...|...|++++|...|++.. .|+...|..+...|...|++++|+..|++..+. .|+ ...+..+..++...|
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcc
Confidence 3455666677777777777777765 336677777777777777777777777777763 343 346666666777777
Q ss_pred CHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 003937 529 LVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPD-VVAWGSLLSACRVHKNLDLGKIAAEK 607 (785)
Q Consensus 529 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 607 (785)
++++|...|+...+.. |+..... +...| +...|+ ...|..+...+...|++++|...+++
T Consensus 86 ~~~~A~~~~~~al~~~---~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQL---RGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp CHHHHHHHHHHHHHTT---TTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC---CCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 7777777777666421 2111000 00000 012343 46788888889999999999999999
Q ss_pred HHhhCCCC
Q 003937 608 LLLIEPDN 615 (785)
Q Consensus 608 ~~~~~p~~ 615 (785)
++++.|++
T Consensus 147 al~~~p~~ 154 (213)
T 1hh8_A 147 ATSMKSEP 154 (213)
T ss_dssp HHTTCCSG
T ss_pred HHHcCccc
Confidence 99999964
No 127
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.35 E-value=1.8e-06 Score=87.75 Aligned_cols=196 Identities=9% Similarity=-0.025 Sum_probs=146.1
Q ss_pred cCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 003937 425 LASLDHGKQIHASALRSGEASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFER 504 (785)
Q Consensus 425 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 504 (785)
.|++++|.+++....+..-. . .+...|++++|...|.+. ...|...|++++|+..|.+
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA------------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHH
Confidence 56778888888877764211 1 111157888888877654 4567889999999999998
Q ss_pred HHHC----CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcC---CCCC-CchhHHHHHHHHhhcCCHHHHHHHHHh
Q 003937 505 MLEL----GIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVH---KIKP-TPSHFASMVDLLGRAGLLQEAYNFIEN 575 (785)
Q Consensus 505 m~~~----g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 575 (785)
..+. |-.+. ..+|..+...|...|++++|...|++..+.. |-.+ ...++..+...|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7753 21111 2378888889999999999999998876421 1111 14567788889988 999999999987
Q ss_pred C-CCCC---C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc------hhHHHHHHHHHhcCChHHHHHHHHH
Q 003937 576 M-PLEP---D----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS------GAYSALCNLYSSCGKWEDAANIRKS 641 (785)
Q Consensus 576 ~-~~~p---~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 641 (785)
. .+.| + ..++..+...+...|++++|+..+++++++.|++. .++..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 1111 1 45788888899999999999999999999866443 2677778888899999999999998
Q ss_pred HH
Q 003937 642 MK 643 (785)
Q Consensus 642 m~ 643 (785)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 86
No 128
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.34 E-value=2.6e-06 Score=87.65 Aligned_cols=144 Identities=10% Similarity=0.071 Sum_probs=106.2
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMV 557 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 557 (785)
+...|..+...|.+.|++++|+..|++..+ +.|+...+ ..+.+.++-. -....|..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~-----------~~~~~~~~~~---------~~~~~~~nla 203 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF-----------SNEEAQKAQA---------LRLASHLNLA 203 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC-----------CSHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC-----------ChHHHHHHHH---------HHHHHHHHHH
Confidence 455677777777777888888888877776 34433110 0011111100 0134567778
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHH
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 635 (785)
..|.+.|++++|.+.+++. .+.| +...|..+..++...|++++|+..++++++++|++..++..+..++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888777 3455 5778899999999999999999999999999999999999999999999999999
Q ss_pred -HHHHHHHH
Q 003937 636 -ANIRKSMK 643 (785)
Q Consensus 636 -~~~~~~m~ 643 (785)
...++.|.
T Consensus 284 ~~~~~~~~~ 292 (336)
T 1p5q_A 284 EKKLYANMF 292 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 45666664
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.33 E-value=5.4e-06 Score=71.69 Aligned_cols=113 Identities=13% Similarity=0.034 Sum_probs=67.6
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 003937 517 YVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRV 594 (785)
Q Consensus 517 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 594 (785)
+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+..
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 96 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA 96 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 333334444444444444444443321 1112334444444555555555555555444 1223 45677777788888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCC
Q 003937 595 HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGK 631 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 631 (785)
.|++++|...++++++.+|.+...+..+..++...|+
T Consensus 97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 97 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8899999999999998888888888888888877664
No 130
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.32 E-value=5.3e-06 Score=71.38 Aligned_cols=115 Identities=15% Similarity=0.031 Sum_probs=77.0
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACR 593 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 593 (785)
.+..+...+...|++++|...+++..+. .+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 3444444555555555555555554431 1223444555556666666666666666554 2233 4667778888888
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCCh
Q 003937 594 VHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKW 632 (785)
Q Consensus 594 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 632 (785)
..|+++.|...++++++..|+++..+..++.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999998888888999988888875
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.32 E-value=7.7e-05 Score=74.93 Aligned_cols=159 Identities=9% Similarity=-0.073 Sum_probs=119.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcccC----CCh---h-HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH----HHHHH
Q 003937 453 LITMYSKAGNINAARRVFNLIHWR----QET---V-SWTSMIVALAQHGLGEEAIQLFERMLELGIK-PDH----ITYVG 519 (785)
Q Consensus 453 li~~y~~~g~~~~A~~~~~~~~~~----p~~---~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ 519 (785)
.+..+...|++++|...+++.... |+. . .+..+...+...|++++|+..|++..+.... ++. .+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 467788999999999999987543 121 1 2334666677778999999999999984322 222 26888
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcC----CCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVH----KIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-------PLEPD-VVAWG 586 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~ 586 (785)
+..++...|++++|..+|+++.+.. +..+. ..++..+...|.+.|++++|.+.+++. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 9999999999999999999887421 11222 346788999999999999999998876 22222 56888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHhh
Q 003937 587 SLLSACRVHKN-LDLGKIAAEKLLLI 611 (785)
Q Consensus 587 ~ll~~~~~~g~-~~~a~~~~~~~~~~ 611 (785)
.+...+...|+ .++|...+++++.+
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88888999994 69999999998764
No 132
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.28 E-value=3.5e-06 Score=72.46 Aligned_cols=95 Identities=11% Similarity=0.009 Sum_probs=80.5
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS 628 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 628 (785)
..+..+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34556677788888888888888776 3345 577888888889999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHhC
Q 003937 629 CGKWEDAANIRKSMKYV 645 (785)
Q Consensus 629 ~g~~~~a~~~~~~m~~~ 645 (785)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 99999999999988654
No 133
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.27 E-value=5.5e-06 Score=89.57 Aligned_cols=117 Identities=9% Similarity=0.004 Sum_probs=88.3
Q ss_pred HhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 003937 523 ACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDL 600 (785)
Q Consensus 523 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~ 600 (785)
.+...|++++|.+.+++..+. -+.+...+..+...|.+.|++++|.+.+++. .+.| +...|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 455667777777777776652 1223566777777788888888888877776 4455 46788899999999999999
Q ss_pred HHHHHHHHHhhCCCCchhHHHHHHH--HHhcCChHHHHHHHHH
Q 003937 601 GKIAAEKLLLIEPDNSGAYSALCNL--YSSCGKWEDAANIRKS 641 (785)
Q Consensus 601 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 641 (785)
|+..++++++++|++...+..+..+ +.+.|++++|.+.+++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999998888888 8899999999998874
No 134
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.26 E-value=0.00036 Score=69.62 Aligned_cols=224 Identities=10% Similarity=0.084 Sum_probs=149.0
Q ss_pred hHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhccC--chHHHHHHHHHHHHhCCCCchHHHHHHHHHH----Hhc---CCH
Q 003937 394 KDAVELFRSMVREGPKPNNYT-LSAMLSVSSSLA--SLDHGKQIHASALRSGEASSLSVSNALITMY----SKA---GNI 463 (785)
Q Consensus 394 ~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~~~---g~~ 463 (785)
++|+.++..++. +.|+..| ++.=-..+...+ .++++...+..++.... -+..+++---..+ .+. +++
T Consensus 50 ~~aL~~t~~~L~--~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGIN--ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHH--HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCH
Confidence 455555555554 2344333 222223333444 55555555555555432 1222232222222 333 788
Q ss_pred HHHHHHHHhcccC--CChhHHHHHHHHHHHcCChH--HHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCC------HHH
Q 003937 464 NAARRVFNLIHWR--QETVSWTSMIVALAQHGLGE--EAIQLFERMLELGIKP-DHITYVGVLTACTHGGL------VEQ 532 (785)
Q Consensus 464 ~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~------~~~ 532 (785)
++++++++.+... .+-.+|+--.-.+.+.|+++ ++++.++++.+. .| |...|+.-.....+.|. +++
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 8999999887422 37778888877788888888 999999999984 44 44567666666666665 889
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 003937 533 GQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQE-AYNFIENM-PL----EPDVVAWGSLLSACRVHKNLDLGKIAAE 606 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 606 (785)
+.++++.+.. --+-|...|+.+-.++.+.|+..+ +.++.++. .. ..+...+..+...+.+.|+.++|.++++
T Consensus 205 El~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 205 ELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999988876 234567788888888888887544 55577665 22 2367788999999999999999999999
Q ss_pred HHHh-hCCCCchhHHHHHH
Q 003937 607 KLLL-IEPDNSGAYSALCN 624 (785)
Q Consensus 607 ~~~~-~~p~~~~~~~~l~~ 624 (785)
.+.+ .+|.....+...++
T Consensus 283 ~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 283 LLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHTTCGGGHHHHHHHHH
T ss_pred HHHhccChHHHHHHHHHHh
Confidence 9997 89977766665443
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.25 E-value=2.6e-06 Score=75.67 Aligned_cols=103 Identities=12% Similarity=0.031 Sum_probs=67.9
Q ss_pred CCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 003937 510 IKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAW 585 (785)
Q Consensus 510 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 585 (785)
+.|+.. .+..+...+...|++++|...|+...+ +.| +...|..+..+|.+.|++++|.+.|++. .+.| ++..|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 344432 455555566666666666666666654 223 3555666666677777777777766666 3445 35677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhCCCC
Q 003937 586 GSLLSACRVHKNLDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 586 ~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~ 615 (785)
..+..++...|++++|+..+++++++.|++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 778888888888888888888888888743
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.24 E-value=5.4e-06 Score=80.86 Aligned_cols=182 Identities=10% Similarity=-0.036 Sum_probs=134.6
Q ss_pred hcCCHHHHHHHHHhccc-CC-ChhHHHHH-------HHHHHHcCChHHHHHHHHHHHHCCCCCCHH--------------
Q 003937 459 KAGNINAARRVFNLIHW-RQ-ETVSWTSM-------IVALAQHGLGEEAIQLFERMLELGIKPDHI-------------- 515 (785)
Q Consensus 459 ~~g~~~~A~~~~~~~~~-~p-~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------------- 515 (785)
..++...|.+.|.+... .| ....|+.+ ...+...++..+++..+++-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57899999999988752 23 56788888 4556666666666665555444 444332
Q ss_pred --------HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----H
Q 003937 516 --------TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDV----V 583 (785)
Q Consensus 516 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~----~ 583 (785)
....+..++...|++++|.+.|+.+.. ..|+....-.+...+.+.|++++|+..|+.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123355677889999999999988764 2354335556667889999999999999877434433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CC-CchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLIE--PD-NSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
.+..+..++...|++++|+..++++.... |. .+.....++.++.+.|+.++|...|+++...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67778888999999999999999998643 54 4457788999999999999999999999764
No 137
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.24 E-value=2.9e-06 Score=72.38 Aligned_cols=94 Identities=18% Similarity=0.077 Sum_probs=83.4
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc
Q 003937 552 HFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSC 629 (785)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 629 (785)
.+..+...+.+.|++++|...+++. ...| +...|..+...+...|+.++|+..++++++++|+++..+..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888999999999999888 4456 5778888988999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 003937 630 GKWEDAANIRKSMKYV 645 (785)
Q Consensus 630 g~~~~a~~~~~~m~~~ 645 (785)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998754
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.24 E-value=3.1e-06 Score=75.24 Aligned_cols=107 Identities=7% Similarity=-0.061 Sum_probs=75.0
Q ss_pred CCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 003937 510 IKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWG 586 (785)
Q Consensus 510 ~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 586 (785)
+.|+.. .+..+...+...|++++|...|+...+. -+.+...|..+...|.+.|++++|.+.|++. .+.| +...|.
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 93 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPF 93 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHH
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345433 5555666667777777777777766541 1234556666777777777777777777766 3345 466778
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 587 SLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 587 ~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
.+..++...|++++|+..+++++++.|+++..
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 88888889999999999999999998876654
No 139
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.23 E-value=8.1e-06 Score=67.96 Aligned_cols=98 Identities=17% Similarity=0.126 Sum_probs=81.7
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC--CchhHHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD--NSGAYSALCNL 625 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 625 (785)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++++..|+ +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 455666777788888888888888776 2334 5678888888899999999999999999999998 88999999999
Q ss_pred HHhc-CChHHHHHHHHHHHhCCC
Q 003937 626 YSSC-GKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 626 ~~~~-g~~~~a~~~~~~m~~~g~ 647 (785)
|... |++++|.+.++...+...
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999999876543
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.23 E-value=3.8e-06 Score=77.32 Aligned_cols=120 Identities=8% Similarity=0.005 Sum_probs=83.4
Q ss_pred hccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--H
Q 003937 525 THGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSA-CRVHKNL--D 599 (785)
Q Consensus 525 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~-~~~~g~~--~ 599 (785)
...|++++|...++...+. -+.+...+..+...|...|++++|.+.+++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 3455666666666665542 1234556666667777777777777777665 2233 45667777777 6678887 8
Q ss_pred HHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 600 LGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 600 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
+|...++++++.+|+++..+..++.+|...|++++|...+++..+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 89999999988888888888888999999999999999888887643
No 141
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.20 E-value=3.5e-05 Score=77.45 Aligned_cols=163 Identities=7% Similarity=-0.073 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcccC-CC-h------hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC---CCC--HH
Q 003937 449 VSNALITMYSKAGNINAARRVFNLIHWR-QE-T------VSWTSMIVALAQHGLGEEAIQLFERMLELGI---KPD--HI 515 (785)
Q Consensus 449 ~~~~li~~y~~~g~~~~A~~~~~~~~~~-p~-~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~ 515 (785)
.+...+..|...|++++|.+.+++.... +. . ..+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3345677888999999999998765322 11 1 1234455667788899999999999886321 122 23
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-----chhHHHHHHHHhhcCCHHHHHHHHHhC-CC------CCC-H
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-----PSHFASMVDLLGRAGLLQEAYNFIENM-PL------EPD-V 582 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~------~p~-~ 582 (785)
+++.+...|...|++++|..++++..+.....|+ ...+..+...|.+.|++++|.+.+++. .+ ... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999999988732112222 257888999999999999999998876 11 111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHHhh
Q 003937 583 VAWGSLLSACRVHKNLDLG-KIAAEKLLLI 611 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~ 611 (785)
.+|..+...+...|+.++| ...+++++.+
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 6788888899999999999 7878888763
No 142
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.18 E-value=6.3e-06 Score=74.68 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=60.9
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS 628 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 628 (785)
..+..+...|.+.|++++|.+.|++. ...| +...|..+...+...|++++|+..++++++++|++...|..++.+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34455555566666666666666555 2334 455666666666677777777777777777777666777777777777
Q ss_pred cCChHHHHHHHHHHHh
Q 003937 629 CGKWEDAANIRKSMKY 644 (785)
Q Consensus 629 ~g~~~~a~~~~~~m~~ 644 (785)
.|++++|...+++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 7777777777766654
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.16 E-value=1.7e-05 Score=69.09 Aligned_cols=98 Identities=10% Similarity=0.006 Sum_probs=83.1
Q ss_pred CCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 548 PTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 548 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
.+...+..+...+.+.|++++|...|++. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34566777778888888888888888776 3345 477888888889999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 003937 626 YSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 626 ~~~~g~~~~a~~~~~~m~~~ 645 (785)
|...|++++|...+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.16 E-value=6.8e-06 Score=70.72 Aligned_cols=93 Identities=11% Similarity=0.034 Sum_probs=78.4
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-------hHHHH
Q 003937 552 HFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG-------AYSAL 622 (785)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~l 622 (785)
.+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|+..++++++++|++.. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4556778888888999998888876 4556 4778899999999999999999999999999886543 67788
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 003937 623 CNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 623 ~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+.+|...|++++|.+.+++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 8999999999999999998765
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.13 E-value=2e-05 Score=67.03 Aligned_cols=96 Identities=21% Similarity=0.315 Sum_probs=86.3
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|++++|...++++++..|+++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456778889999999999999999987 3334 57788999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 003937 628 SCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 628 ~~g~~~~a~~~~~~m~~~ 645 (785)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.13 E-value=3.1e-05 Score=72.70 Aligned_cols=61 Identities=15% Similarity=0.063 Sum_probs=41.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC--CCc----hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLLIEP--DNS----GAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p--~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
.+..+...+...|++++|...+++++++.+ .++ .++..++.+|...|++++|...+++..+
T Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 455666667777777777777777765421 121 2356788888888888888888877653
No 147
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.13 E-value=5.9e-05 Score=73.56 Aligned_cols=127 Identities=11% Similarity=-0.078 Sum_probs=93.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCC-C----HhHHHHHHHHHHHc
Q 003937 316 GNALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDR-D----VVAWTAMLVGYEQN 390 (785)
Q Consensus 316 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~-~----~~~~~~li~~~~~~ 390 (785)
.-.+...+...|++++|.++|+.+....|+......+...+.+.+++++|+..|+..... + ...+..+-.++.+.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence 345677888999999999999998888775447777788899999999999999876643 2 23667778889999
Q ss_pred CChhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccCchHHHHHHHHHHHHhC
Q 003937 391 GLNKDAVELFRSMVREGPKPNN--YTLSAMLSVSSSLASLDHGKQIHASALRSG 442 (785)
Q Consensus 391 g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 442 (785)
|++++|+..|++.......|.. ......-.++.+.|+.++|..+++.+....
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999988743322542 233344455666777777777777766653
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.12 E-value=1.6e-05 Score=68.64 Aligned_cols=98 Identities=10% Similarity=0.091 Sum_probs=88.2
Q ss_pred CCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 548 PTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 548 p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
.+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34667788889999999999999999987 5556 577889999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 003937 626 YSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 626 ~~~~g~~~~a~~~~~~m~~~ 645 (785)
|...|++++|.+.+++..+.
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999998754
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.11 E-value=2.3e-05 Score=65.82 Aligned_cols=95 Identities=14% Similarity=0.125 Sum_probs=64.8
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS 628 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 628 (785)
..+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34455566666667777776666665 2233 456666666677777777777777777777777777777777777777
Q ss_pred cCChHHHHHHHHHHHhC
Q 003937 629 CGKWEDAANIRKSMKYV 645 (785)
Q Consensus 629 ~g~~~~a~~~~~~m~~~ 645 (785)
.|++++|...+++..+.
T Consensus 85 ~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp TTCHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHHHc
Confidence 77777777777776543
No 150
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.11 E-value=1.1e-05 Score=71.15 Aligned_cols=105 Identities=8% Similarity=-0.058 Sum_probs=70.7
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACR 593 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 593 (785)
.+..+...+...|++++|...|+...+. -+.+...|..+...|.+.|++++|.+.|++. .+.| +...|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4444555666667777777777666541 1224555666666777777777777777665 3344 4566777888888
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 594 VHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 594 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
..|++++|...+++++++.|+++......
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 88899999999999988888776654443
No 151
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.10 E-value=1.2e-05 Score=73.91 Aligned_cols=126 Identities=11% Similarity=0.094 Sum_probs=86.4
Q ss_pred HHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHH-HhhcCCH-
Q 003937 490 AQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDL-LGRAGLL- 566 (785)
Q Consensus 490 ~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~- 566 (785)
...|++++|+..|++..+. .| +...+..+...+...|++++|...|++..+.. +.+...+..+... |.+.|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcc
Confidence 3456677777777777663 34 34566777777777777888777777776521 2245566666666 6677887
Q ss_pred -HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 003937 567 -QEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAY 619 (785)
Q Consensus 567 -~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 619 (785)
++|.+.+++. ...| +...|..+...+...|+++.|...+++++++.|+++...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8888887776 3345 466788888888999999999999999999999775433
No 152
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.10 E-value=2.3e-05 Score=73.64 Aligned_cols=153 Identities=15% Similarity=0.025 Sum_probs=94.5
Q ss_pred hcCCHHHHHHHHHhcccCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHhhccCCHH
Q 003937 459 KAGNINAARRVFNLIHWRQ--ETVSWTSMIVALAQHGLGEEAIQLFERMLE----LGIKPDH-ITYVGVLTACTHGGLVE 531 (785)
Q Consensus 459 ~~g~~~~A~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-~t~~~ll~a~~~~g~~~ 531 (785)
..|++++|.+.++.+...| ....++.+...|...|++++|+..+++..+ .|..|.. .++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4567777777333332222 345667777777777777777777777654 1222222 35666666777778888
Q ss_pred HHHHHHHHhhhcCCCCC-C----chhHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCH
Q 003937 532 QGQRYYNMMKNVHKIKP-T----PSHFASMVDLLGRAGLLQEAYNFIENM----PLEPD----VVAWGSLLSACRVHKNL 598 (785)
Q Consensus 532 ~a~~~~~~m~~~~~~~p-~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~ll~~~~~~g~~ 598 (785)
+|...+++..+...-.+ + ...+..+...+...|++++|.+.+++. +..++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 87777776654211112 1 334666777778888888887777665 11112 23456777778888999
Q ss_pred HHHHHHHHHHHhh
Q 003937 599 DLGKIAAEKLLLI 611 (785)
Q Consensus 599 ~~a~~~~~~~~~~ 611 (785)
++|...+++++++
T Consensus 164 ~~A~~~~~~al~~ 176 (203)
T 3gw4_A 164 LEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888888764
No 153
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=2.9e-05 Score=68.45 Aligned_cols=95 Identities=12% Similarity=0.018 Sum_probs=61.1
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCN 624 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 624 (785)
...+..+...+.+.|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++++..|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 444555555666666666666666655 34454 4556666666666677777777777777777766666667777
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 003937 625 LYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 625 ~~~~~g~~~~a~~~~~~m~~ 644 (785)
+|...|++++|...+++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777666654
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.08 E-value=2.4e-05 Score=73.38 Aligned_cols=169 Identities=11% Similarity=-0.015 Sum_probs=104.4
Q ss_pred HHHhcCCHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHH
Q 003937 456 MYSKAGNINAARRVFNLIHWR--QETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 533 (785)
.....|++++|.+.|+..... .....|..+...+...|++++|+..|++..+ +.|+...+... ..+.-
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~--------~~~~~ 82 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ--------ILLDK 82 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------HHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------hHHHH
Confidence 344456666666666543211 1345677777888888888888888888887 33432211000 00000
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 611 (785)
. ..+ ....+..+...|.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++++++
T Consensus 83 ~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 83 K---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp H---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred H---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0 000 1245666777788888888888888776 3344 5678888889999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHhcCChHHHH-HHHHHHHhC
Q 003937 612 EPDNSGAYSALCNLYSSCGKWEDAA-NIRKSMKYV 645 (785)
Q Consensus 612 ~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~~ 645 (785)
+|++...+..+..++...|+.+++. ..+..|...
T Consensus 152 ~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 152 NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988888877 555555443
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.07 E-value=4.8e-05 Score=63.78 Aligned_cols=107 Identities=15% Similarity=0.090 Sum_probs=62.8
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 003937 517 YVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRV 594 (785)
Q Consensus 517 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 594 (785)
+..+...+...|++++|...++...+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 333444444444555555544444331 1123444445555555556666665555554 2233 45667777777888
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 595 HKNLDLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
.|++++|...++++++..|+++..+..+..+
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 8888888888888888888777666665554
No 156
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.03 E-value=1.7e-05 Score=85.65 Aligned_cols=114 Identities=15% Similarity=0.105 Sum_probs=63.5
Q ss_pred HHHhcCCHHHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHH
Q 003937 456 MYSKAGNINAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQ 532 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~ 532 (785)
.|.+.|++++|.+.|++.. ..| +...|..+..+|.+.|++++|++.+++..+ +.|+ ..++..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4556667777777666543 122 455666666667777777777777776666 3443 3456666666666666666
Q ss_pred HHHHHHHhhhcCCCCCC-chhHHHHHHH--HhhcCCHHHHHHHHH
Q 003937 533 GQRYYNMMKNVHKIKPT-PSHFASMVDL--LGRAGLLQEAYNFIE 574 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p~-~~~~~~li~~--~~~~g~~~~A~~~~~ 574 (785)
|.+.+++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 66666666542 222 2333333333 555566666666655
No 157
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.03 E-value=2.9e-05 Score=66.57 Aligned_cols=107 Identities=9% Similarity=-0.076 Sum_probs=62.7
Q ss_pred HHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 003937 517 YVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRV 594 (785)
Q Consensus 517 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~ 594 (785)
+......+...|++++|...|++..+. -+.+...|..+...|.+.|++++|.+.+++. .+.| +...|..+...+..
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 333444444555555555555544431 1122444555555555666666666555554 2344 35677777777888
Q ss_pred cCCHHHHHHHHHHHHhhC------CCCchhHHHHHHH
Q 003937 595 HKNLDLGKIAAEKLLLIE------PDNSGAYSALCNL 625 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 625 (785)
.|++++|...++++++++ |.+......+..+
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 888888888888888887 7666555555444
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.02 E-value=3.1e-05 Score=70.04 Aligned_cols=106 Identities=15% Similarity=0.043 Sum_probs=73.0
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACR 593 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~ 593 (785)
.+..+...+...|++++|...|++..+. .+.+...|..+...|.+.|++++|++.+++. .+.| +...|..+...+.
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4455555556666666666666655541 1223555666666677777777777776665 3345 4778888888999
Q ss_pred hcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 003937 594 VHKNLDLGKIAAEKLLLIEPDNSGAYSALC 623 (785)
Q Consensus 594 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 623 (785)
..|++++|...++++++++|++...+....
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999998887554443
No 159
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.01 E-value=6.6e-05 Score=67.67 Aligned_cols=127 Identities=14% Similarity=0.026 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD 558 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 558 (785)
..|..+...+...|++++|+..|++..+. .| +..++..+..++...|++++|...+++..+. .+.+...+..+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~ 89 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAA 89 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 34555666666677777777777766663 33 3445666666666777777777777666542 1233556666667
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 003937 559 LLGRAGLLQEAYNFIENM-PLEP-DVVAWGSL--LSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~ 610 (785)
.|.+.|++++|.+.+++. ...| +...+..+ ...+...|++++|...+++..+
T Consensus 90 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 90 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 777777777777777665 2233 33444333 3335666777777777776654
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.01 E-value=9e-05 Score=65.24 Aligned_cols=77 Identities=17% Similarity=0.036 Sum_probs=52.1
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
..+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|++...+..+..+..
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 34444555555555666665555544 2234 45677777888888899999999999999999987777666665543
No 161
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.00 E-value=2.3e-05 Score=68.80 Aligned_cols=62 Identities=16% Similarity=0.092 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-------CCCCchhH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 583 VAWGSLLSACRVHKNLDLGKIAAEKLLLI-------EPDNSGAY----SALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
..|..+..++...|++++|+..+++++++ +|++...| ...+.++...|++++|...+++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 38888888999999999999999999999 99999999 9999999999999999999999864
No 162
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.99 E-value=3.2e-05 Score=66.32 Aligned_cols=97 Identities=19% Similarity=0.158 Sum_probs=86.5
Q ss_pred CchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 003937 549 TPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY 626 (785)
Q Consensus 549 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 626 (785)
+...+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|...++++++..|+++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3556777888999999999999999987 3344 5778889999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 003937 627 SSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 627 ~~~g~~~~a~~~~~~m~~~ 645 (785)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998764
No 163
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.97 E-value=5.6e-05 Score=68.14 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 582 VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 582 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...|..+..++...|+++.|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4578888888999999999999999999999999999999999999999999999999988653
No 164
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.94 E-value=3.7e-05 Score=66.02 Aligned_cols=91 Identities=16% Similarity=0.096 Sum_probs=68.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---chhHHHHHHHH
Q 003937 555 SMVDLLGRAGLLQEAYNFIENM-PLEPDV----VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN---SGAYSALCNLY 626 (785)
Q Consensus 555 ~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 626 (785)
.+...+.+.|++++|.+.|++. ...|+. ..|..+...+...|++++|...++++++..|++ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455667777888887777766 223332 366677777888888888888888888888877 66688888888
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 003937 627 SSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 627 ~~~g~~~~a~~~~~~m~~~ 645 (785)
...|++++|...++...+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888888887653
No 165
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.90 E-value=5.3e-05 Score=77.75 Aligned_cols=119 Identities=13% Similarity=0.082 Sum_probs=77.7
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHHhcc-cCCC----------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHC
Q 003937 446 SLSVSNALITMYSKAGNINAARRVFNLIH-WRQE----------------TVSWTSMIVALAQHGLGEEAIQLFERMLEL 508 (785)
Q Consensus 446 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-~~p~----------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 508 (785)
+...+..+...|.+.|++++|...|++.. ..|+ ...|..+..+|.+.|++++|+..|++.++
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~- 224 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE- 224 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence 45677888999999999999999998764 2233 35677777777777777777777777776
Q ss_pred CCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHHHHHhhcCCHHHH
Q 003937 509 GIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMVDLLGRAGLLQEA 569 (785)
Q Consensus 509 g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A 569 (785)
+.|+ ...+..+..++...|++++|...|++..+ +.| +...+..+..++.+.|+.++|
T Consensus 225 -~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 -LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ---LYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp -HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3443 34666666666666666666666666654 122 233444444444444444444
No 166
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.90 E-value=1.1e-05 Score=68.22 Aligned_cols=83 Identities=13% Similarity=0.107 Sum_probs=61.4
Q ss_pred cCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHH
Q 003937 563 AGLLQEAYNFIENM-PL---EPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAAN 637 (785)
Q Consensus 563 ~g~~~~A~~~~~~~-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 637 (785)
.|++++|+..|++. .. .|+ ...|..+...+...|++++|+..++++++++|+++.++..++.+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666777777666 33 243 45677777778888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhC
Q 003937 638 IRKSMKYV 645 (785)
Q Consensus 638 ~~~~m~~~ 645 (785)
.+++..+.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88877653
No 167
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.89 E-value=5.4e-05 Score=65.81 Aligned_cols=98 Identities=8% Similarity=-0.095 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 003937 515 ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSAC 592 (785)
Q Consensus 515 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~ 592 (785)
..+..+...+...|++++|...|+...+. .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 34444445555555555555555554431 1122444555555555666666666555554 2234 456677777777
Q ss_pred HhcCCHHHHHHHHHHHHhhCCC
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
...|+++.|...+++++++.|+
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHChh
Confidence 7888888888888888887775
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.89 E-value=5.6e-05 Score=62.70 Aligned_cols=99 Identities=11% Similarity=0.012 Sum_probs=58.7
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP---DVVAWGSLLSA 591 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~ll~~ 591 (785)
.+..+...+...|++++|...+++..+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3444444555555555555555555431 1223444555556666666666666666555 2233 35667777777
Q ss_pred HHhc-CCHHHHHHHHHHHHhhCCCCc
Q 003937 592 CRVH-KNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 592 ~~~~-g~~~~a~~~~~~~~~~~p~~~ 616 (785)
+... |+.++|...+++++...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777 888888888888887777543
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.85 E-value=0.0012 Score=66.60 Aligned_cols=179 Identities=16% Similarity=0.092 Sum_probs=105.2
Q ss_pred CHHHHHHHHHhcccC--CChhHHHHHHHHHHHc-C-ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHH-----
Q 003937 462 NINAARRVFNLIHWR--QETVSWTSMIVALAQH-G-LGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVE----- 531 (785)
Q Consensus 462 ~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~-g-~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~----- 531 (785)
.++++++.++.+... .+..+|+.-...+... + ++++++++++++.+ ..| |..+|..-.....+.|.++
T Consensus 104 ~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~ 181 (349)
T 3q7a_A 104 SLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEA 181 (349)
T ss_dssp CHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred hHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchh
Confidence 366666666655322 2455566655555554 5 66777777777766 334 3345544444444444443
Q ss_pred ---HHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-
Q 003937 532 ---QGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGL-------LQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNL- 598 (785)
Q Consensus 532 ---~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~- 598 (785)
++.++++++.+. -.-|...|+....++.+.|+ ++++++.++++ ...| |...|+-+-..+.+.|+.
T Consensus 182 ~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~ 259 (349)
T 3q7a_A 182 QWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPL 259 (349)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCS
T ss_pred hHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCc
Confidence 677777766652 23345556666666666665 67777777665 3445 577787776666665543
Q ss_pred -------------------HHHHHHHHHHHhhC------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 599 -------------------DLGKIAAEKLLLIE------PDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 599 -------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
..-......+.... +.++-+...|+++|...|+.++|.++++.+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 260 VPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222222222222 34666788899999999999999999999864
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.85 E-value=8.4e-05 Score=79.87 Aligned_cols=144 Identities=10% Similarity=0.032 Sum_probs=102.6
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHH
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMV 557 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li 557 (785)
....|..+...|.+.|++++|+..|++.++ +.|+...+ . .+...+. .. -....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~~-~~--------~~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKAS-ES--------FLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHHH-HH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHHH-HH--------HHHHHHHHHH
Confidence 345677778888888888888888888876 33432110 0 0111100 00 0134567778
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHH
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 635 (785)
.+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..++++++++|++..++..+..++.+.|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877 3445 5778899999999999999999999999999999999999999999999999988
Q ss_pred HH-HHHHHH
Q 003937 636 AN-IRKSMK 643 (785)
Q Consensus 636 ~~-~~~~m~ 643 (785)
.+ .++.|.
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 75 455554
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.85 E-value=5.9e-05 Score=64.66 Aligned_cols=95 Identities=14% Similarity=0.121 Sum_probs=78.7
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-------chhHHH
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN-------SGAYSA 621 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~ 621 (785)
..+..+...+...|++++|...+++. ...| +...|..+...+...|++++|...++++++..|++ ..++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34566777788888888888888776 2234 56778888888999999999999999999987765 778999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC
Q 003937 622 LCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 622 l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
++.+|...|++++|...+++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 999999999999999999998764
No 172
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.85 E-value=7e-05 Score=74.67 Aligned_cols=106 Identities=8% Similarity=-0.083 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 003937 513 DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLS 590 (785)
Q Consensus 513 ~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~ 590 (785)
+...+..+...+...|++++|...|++..+. .+.+...|..+...|.+.|++++|.+.+++. .+.|+ ...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3456666777777888888888888777652 1224666777777778888888888877775 45553 567777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHH
Q 003937 591 ACRVHKNLDLGKIAAEKLLLIEPDNSGAYS 620 (785)
Q Consensus 591 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 620 (785)
++...|++++|...++++++++|+++..+.
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~ 110 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHH
Confidence 777888888888888888877776544433
No 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.84 E-value=5.8e-05 Score=64.79 Aligned_cols=107 Identities=11% Similarity=0.065 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCC-chhHHHHH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPT-PSHFASMV 557 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li 557 (785)
..|..+...+.+.|++++|++.|++.++ +.|+. .+|..+..++...|++++|+..+++..+. .|+ ...+..+
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~- 82 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLI- 82 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHH-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHH-
Confidence 4566677777777777777777777776 45543 46666677777777777777777666541 111 1111111
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 003937 558 DLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 617 (785)
..+|..+...+...|++++|+..++++++..| ++.
T Consensus 83 ------------------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~-~~~ 117 (127)
T 4gcn_A 83 ------------------------AKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPE 117 (127)
T ss_dssp ------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-CHH
T ss_pred ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CHH
Confidence 12455566667777788888888888777776 443
No 174
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.84 E-value=3.7e-05 Score=72.11 Aligned_cols=94 Identities=15% Similarity=0.014 Sum_probs=75.6
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Q 003937 552 HFASMVDLLGRAGLLQEAYNFIENM-PLEP-D----------------VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP 613 (785)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p 613 (785)
.+..+...+.+.|++++|.+.|++. ...| + ...|..+...+...|++++|+..++++++++|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 3445555666666666666666655 1122 1 26788888889999999999999999999999
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 614 DNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 614 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+++.++..++.+|...|++++|...+++..+.
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998754
No 175
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.81 E-value=0.0035 Score=62.91 Aligned_cols=117 Identities=15% Similarity=0.127 Sum_probs=53.0
Q ss_pred HHcCChh-HHHHHHHHHHHcCCCCCHhhHHH----HHHHHhccC-------chHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003937 388 EQNGLNK-DAVELFRSMVREGPKPNNYTLSA----MLSVSSSLA-------SLDHGKQIHASALRSGEASSLSVSNALIT 455 (785)
Q Consensus 388 ~~~g~~~-~A~~~~~~m~~~g~~p~~~t~~~----ll~a~~~~~-------~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 455 (785)
.+.|.++ +|+.++..++. +.|+..|.-. ++....... .++.+..++..++... +-+..+|+--.-
T Consensus 40 ~~~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3445444 67777777765 3555544211 111111100 1334444444444332 223334433333
Q ss_pred HHHhcC--CHHHHHHHHHhcccC--CChhHHHHHHHHHHHcCC-hHHHHHHHHHHHH
Q 003937 456 MYSKAG--NINAARRVFNLIHWR--QETVSWTSMIVALAQHGL-GEEAIQLFERMLE 507 (785)
Q Consensus 456 ~y~~~g--~~~~A~~~~~~~~~~--p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~ 507 (785)
.+.+.| .++++..+++.+... .|..+|+--.-.+...|. .+++++.++++.+
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~ 173 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT 173 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 344444 255555555554311 144555555444555555 3556666666655
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00024 Score=75.76 Aligned_cols=189 Identities=9% Similarity=-0.083 Sum_probs=131.1
Q ss_pred HHHHhcCCHHHHHHHHHhcccC-C---Ch---------------hHHHHHHHHHHHcCChHHHHHHHHHHHHC-CCCCCH
Q 003937 455 TMYSKAGNINAARRVFNLIHWR-Q---ET---------------VSWTSMIVALAQHGLGEEAIQLFERMLEL-GIKPDH 514 (785)
Q Consensus 455 ~~y~~~g~~~~A~~~~~~~~~~-p---~~---------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~ 514 (785)
..+.+.|++++|.+.|..+... | +. .++..+...|...|++++|.+.+.++... +..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 3456678888888887765321 1 10 13677888899999999999988887652 111222
Q ss_pred H----HHHHHHHHhhccCCHHHHHHHHHHhhhc---CCCCCC-chhHHHHHHHHhhcCCHHHHHHHHHhC-----C--CC
Q 003937 515 I----TYVGVLTACTHGGLVEQGQRYYNMMKNV---HKIKPT-PSHFASMVDLLGRAGLLQEAYNFIENM-----P--LE 579 (785)
Q Consensus 515 ~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~---~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~-----~--~~ 579 (785)
. +.+.+-..+...|.++++..++...... .+..+. ...+..+...|...|++++|.+++++. + -+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 2333344556678899998888776431 122222 456778889999999999999988876 1 12
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC---CCC----chhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 580 PD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIE---PDN----SGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 580 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
|. ..+|..++..|...|++++|...++++.... |.+ ...+..++..+...|++++|...+....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 32 4477888888999999999999999988753 222 2456777888899999999998887764
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.80 E-value=6e-05 Score=64.59 Aligned_cols=114 Identities=8% Similarity=-0.036 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDL 559 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 559 (785)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+++...+.. |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE---------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc----------
Confidence 345555555666666666666666655531 1223344445555555555555555555443310 00
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH
Q 003937 560 LGRAGLLQEAYNFIENMPLEPD----VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY 626 (785)
Q Consensus 560 ~~~~g~~~~A~~~~~~~~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 626 (785)
..++ ..+|..+...+...|+++.|...++++++..| ++.....+..+.
T Consensus 71 ------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 71 ------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp ------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 0112 44566677777778888888888888888777 555555554443
No 178
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.76 E-value=0.00014 Score=64.95 Aligned_cols=135 Identities=17% Similarity=0.142 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHH
Q 003937 481 SWTSMIVALAQHGLGEEAIQLFERMLELGIK-PDH----ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFAS 555 (785)
Q Consensus 481 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 555 (785)
++..+...|...|++++|+..+++..+.... ++. .++..+...+...|++++|..++++..+.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~------------ 78 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL------------ 78 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------------
Confidence 4566666666777777777777666542100 111 13444444444555555555544443320
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC------CCchhHHHHHHHHHh
Q 003937 556 MVDLLGRAGLLQEAYNFIENMPLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEP------DNSGAYSALCNLYSS 628 (785)
Q Consensus 556 li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~ 628 (785)
....+..+ ...++..+...+...|++++|...+++++++.+ .....+..++.+|..
T Consensus 79 -----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 79 -----------------ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp -----------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------------HHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 00001001 133556666667778888888888887776421 123467788888999
Q ss_pred cCChHHHHHHHHHHHh
Q 003937 629 CGKWEDAANIRKSMKY 644 (785)
Q Consensus 629 ~g~~~~a~~~~~~m~~ 644 (785)
.|++++|.+.+++..+
T Consensus 142 ~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 9999999998887753
No 179
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.75 E-value=0.0097 Score=59.99 Aligned_cols=226 Identities=15% Similarity=0.085 Sum_probs=135.2
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhh-HHHHHHHHhccC-chHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhc-C-CHHHH
Q 003937 391 GLNKDAVELFRSMVREGPKPNNYT-LSAMLSVSSSLA-SLDHGKQIHASALRSGEASSLSVSNALITMYSKA-G-NINAA 466 (785)
Q Consensus 391 g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g-~~~~A 466 (785)
+..++|++++.+++.. .|+..| ++.--..+...+ .++++...+..++... +-+..+++--...+.+. + +++++
T Consensus 68 e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 68 EKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3444566666665552 343333 222222333344 3555666665555443 23344444444444444 5 67888
Q ss_pred HHHHHhcccC--CChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCC------
Q 003937 467 RRVFNLIHWR--QETVSWTSMIVALAQHGLGE--------EAIQLFERMLELGIKP-DHITYVGVLTACTHGGL------ 529 (785)
Q Consensus 467 ~~~~~~~~~~--p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~------ 529 (785)
+++++.+... .|..+|+--.-.+.+.|..+ ++++.++++.+. .| |...|+.....+.+.+.
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchH
Confidence 8888877533 25667776555555555555 889999999884 44 45577777777777665
Q ss_pred -HHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCH--------------------HHHHHHHHhC-CC-------CC
Q 003937 530 -VEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLL--------------------QEAYNFIENM-PL-------EP 580 (785)
Q Consensus 530 -~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~-~~-------~p 580 (785)
++++.++++++.. --+-|...|+.+-..+.+.|+. .+..++..++ .. .+
T Consensus 223 ~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 223 SLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred HHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 6788888887765 2234566677777777666653 3444555554 11 25
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhCCCCchhHHHHH
Q 003937 581 DVVAWGSLLSACRVHKNLDLGKIAAEKLL-LIEPDNSGAYSALC 623 (785)
Q Consensus 581 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~l~ 623 (785)
....+..|...|...|+.++|.++++.+. +.+|-....+.-.+
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~ 344 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR 344 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence 67788889999999999999999999996 57886555544433
No 180
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.74 E-value=8.2e-05 Score=63.15 Aligned_cols=94 Identities=11% Similarity=0.028 Sum_probs=52.4
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKN 597 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~ 597 (785)
+...+...|++++|...|+...+. -+.+...+..+..++.+.|++++|+..+++. .+.| +...|..+...+...|+
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~ 100 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 100 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 334445555555555555555431 1123444555555566666666666666555 3344 35566777777777777
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 003937 598 LDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 598 ~~~a~~~~~~~~~~~p~~ 615 (785)
.++|...++++++++|++
T Consensus 101 ~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 101 ANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhCcCC
Confidence 777888888777777754
No 181
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.73 E-value=0.00031 Score=60.02 Aligned_cols=98 Identities=9% Similarity=-0.011 Sum_probs=57.9
Q ss_pred HHhhccCCHHHHHHHHHHhhhcCCCCCC-c---hhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHH
Q 003937 522 TACTHGGLVEQGQRYYNMMKNVHKIKPT-P---SHFASMVDLLGRAGLLQEAYNFIENM-PLEPD----VVAWGSLLSAC 592 (785)
Q Consensus 522 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~ll~~~ 592 (785)
..+...|++++|...|+.+.+. .|+ . ..+..+...|.+.|++++|.+.+++. ...|+ ...+..+...+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444455555555555554431 122 1 24445555566666666666666554 22232 44566677777
Q ss_pred HhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 593 RVHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
...|+.++|...++++++..|+++......
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~ 116 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDAARVAQ 116 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChHHHHHH
Confidence 888888888888888888888766544433
No 182
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.72 E-value=6.7e-05 Score=65.87 Aligned_cols=109 Identities=15% Similarity=0.019 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCH-------------HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCC
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDH-------------ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKI 546 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 546 (785)
..|......+.+.|++++|+..|++.++ +.|+. ..|..+..++.+.|++++|+..+++..+
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~---- 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH---- 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----
Confidence 3455566667777788888888877777 45541 1444444444444444444444443332
Q ss_pred CCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhH
Q 003937 547 KPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAW----GSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAY 619 (785)
Q Consensus 547 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 619 (785)
+|++. .+.|+ ...| .....++...|++++|+..|+++++++|+|.+.+
T Consensus 86 -------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 86 -------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp -------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred -------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 11111 34786 5588 8999999999999999999999999999877653
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.72 E-value=0.00013 Score=75.69 Aligned_cols=137 Identities=13% Similarity=0.062 Sum_probs=103.4
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC-CchhHHHHH
Q 003937 479 TVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP-TPSHFASMV 557 (785)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 557 (785)
...|..+...+.+.|++++|++.|++.++. .|+.. .....++ .. ...| +...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~-------~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDAD-------GA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHH-------HG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHH-------HH---HHHHHHHHHHHHHH
Confidence 345777788888888888888888887761 11110 0001111 11 0112 355677888
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHH
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDA 635 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 635 (785)
..|.+.|++++|++.+++. .+.| +...|..+..++...|++++|+..++++++++|++...+..+..++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998887 5666 4778889999999999999999999999999999999999999999999888887
Q ss_pred HH
Q 003937 636 AN 637 (785)
Q Consensus 636 ~~ 637 (785)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.72 E-value=0.0012 Score=72.56 Aligned_cols=171 Identities=9% Similarity=0.001 Sum_probs=135.9
Q ss_pred cCCHHHHHHHHHhcc-cCC-ChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhc
Q 003937 460 AGNINAARRVFNLIH-WRQ-ETVSWTSMIVALAQHGL----------GEEAIQLFERMLELGIKPDH-ITYVGVLTACTH 526 (785)
Q Consensus 460 ~g~~~~A~~~~~~~~-~~p-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~ 526 (785)
...-++|.+.++.+. ..| +...|+.--..+...|+ ++++++.++++.+ ..|+. .+|..-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 344567788888764 233 45668877777766666 8999999999998 56654 578887778888
Q ss_pred cC--CHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc------
Q 003937 527 GG--LVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAG-LLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH------ 595 (785)
Q Consensus 527 ~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~------ 595 (785)
.| +++++.+.++++.+. -+-+...|+.-..++.+.| ..+++++.++++ ...| |...|+.....+...
T Consensus 120 l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 88 779999999999872 2345667777777888888 899999999988 5566 678898887776652
Q ss_pred --------CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHH
Q 003937 596 --------KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWED 634 (785)
Q Consensus 596 --------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 634 (785)
+.++++.+.+++++.++|+|..+|.-+..++.+.|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999999999999999999999999999998665
No 185
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.70 E-value=0.0053 Score=61.56 Aligned_cols=210 Identities=12% Similarity=0.073 Sum_probs=144.2
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCC----------HHHHHHHHHhccc--CCChhHHHHHHHHHHHcCC--h
Q 003937 430 HGKQIHASALRSGEASSLSVSNALITMYSKAGN----------INAARRVFNLIHW--RQETVSWTSMIVALAQHGL--G 495 (785)
Q Consensus 430 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~~--~p~~~~~~~li~~~~~~g~--~ 495 (785)
+|......++..+ +-+..+++.--..+...|. ++++..+++.+.. +.+..+|+--.-.+...|+ +
T Consensus 48 eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~ 126 (331)
T 3dss_A 48 SVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNW 126 (331)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCH
T ss_pred HHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccH
Confidence 5666666666543 1223333332222222222 5778888877642 2377889888777777774 8
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCC-HHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc----------
Q 003937 496 EEAIQLFERMLELGIKP-DHITYVGVLTACTHGGL-VEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA---------- 563 (785)
Q Consensus 496 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---------- 563 (785)
++++..++++.+. .| |...|+.-..++...|. ++++.++++.+.+. -+-|...|+....++.+.
T Consensus 127 ~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 127 ARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcccccccc
Confidence 9999999999984 45 45577776667777787 68999999998862 244566677666666554
Q ss_pred ----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCCchhHHHHHHH-
Q 003937 564 ----GLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVH-----------KNLDLGKIAAEKLLLIEPDNSGAYSALCNL- 625 (785)
Q Consensus 564 ----g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~- 625 (785)
+.++++++++.+. ...| |...|+-+-..+... +.++++++.++++++++|++.-.+..++..
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 5688899988887 4456 688888776665554 457899999999999999886655554433
Q ss_pred --HHhcCChHHHHHHHHHHHh
Q 003937 626 --YSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 626 --~~~~g~~~~a~~~~~~m~~ 644 (785)
....|..++...++.++.+
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHH
T ss_pred HhhcccccHHHHHHHHHHHHH
Confidence 2346788888888888875
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.70 E-value=8.3e-05 Score=76.31 Aligned_cols=146 Identities=14% Similarity=-0.001 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHH
Q 003937 480 VSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDL 559 (785)
Q Consensus 480 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 559 (785)
..|..+...+.+.|++++|+..|++... +.|+... +...|..+++...+. ...|..+...
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 3456666777778888888888888776 4565442 223344444333221 1256677778
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHH-HhcCChHHHH
Q 003937 560 LGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLY-SSCGKWEDAA 636 (785)
Q Consensus 560 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~ 636 (785)
|.+.|++++|.+.+++. .+.| +...|..+..++...|++++|+..++++++++|++...+..|..+. ...+..+++.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887776 3445 4667888888888888888888888888888888888888777773 4456777777
Q ss_pred HHHHHHHhC
Q 003937 637 NIRKSMKYV 645 (785)
Q Consensus 637 ~~~~~m~~~ 645 (785)
..+++|...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 888877654
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.68 E-value=3.7e-05 Score=64.85 Aligned_cols=91 Identities=14% Similarity=0.049 Sum_probs=57.9
Q ss_pred cCCHHHHHHHHHHhhhcCC--CCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 003937 527 GGLVEQGQRYYNMMKNVHK--IKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGK 602 (785)
Q Consensus 527 ~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 602 (785)
.|++++|...|++..+ .+ -+.+...+..+...|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 3555666666666554 11 1122445566666677777777777777665 3344 3667777777888888888888
Q ss_pred HHHHHHHhhCCCCchh
Q 003937 603 IAAEKLLLIEPDNSGA 618 (785)
Q Consensus 603 ~~~~~~~~~~p~~~~~ 618 (785)
..++++++..|+++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888877654
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.67 E-value=6.5e-05 Score=77.13 Aligned_cols=113 Identities=12% Similarity=-0.030 Sum_probs=90.0
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVH 595 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~ 595 (785)
.+..+...+...|++++|...|++..+ +.|+.. .+...|+.+++...+. ...|..+...+...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~---~~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIA---YMGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHH---HSCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---Hhccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHHc
Confidence 455677788899999999999998765 234322 2334455555554442 23788888899999
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 596 KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
|++++|+..++++++++|++..+|..++.+|...|++++|...+++..+.
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998654
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.66 E-value=0.00019 Score=64.03 Aligned_cols=136 Identities=18% Similarity=0.017 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHhcccC----CCh----hHHHHHHHHHHHcCChHHHHHHHHHHHHCCC-CCC----
Q 003937 447 LSVSNALITMYSKAGNINAARRVFNLIHWR----QET----VSWTSMIVALAQHGLGEEAIQLFERMLELGI-KPD---- 513 (785)
Q Consensus 447 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~~----p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~---- 513 (785)
..++..+...|...|++++|...+++.... ++. .++..+...|...|++++|++.+++..+..- .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 456778888999999999999999876421 232 3678888999999999999999999875210 111
Q ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 003937 514 HITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEP-DVVAWGSLLSAC 592 (785)
Q Consensus 514 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~ 592 (785)
..++..+...+...|++++|...+++..+. ..+.+..+ ...++..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----------------------------~~~~~~~~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAI-----------------------------AQELKDRIGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-----------------------------HHHccchHhHHHHHHHHHHHH
Confidence 235556666677777777777777655431 01111001 123455556666
Q ss_pred HhcCCHHHHHHHHHHHHhh
Q 003937 593 RVHKNLDLGKIAAEKLLLI 611 (785)
Q Consensus 593 ~~~g~~~~a~~~~~~~~~~ 611 (785)
...|+.++|...+++++++
T Consensus 140 ~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHH
Confidence 6777777777777776654
No 190
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.64 E-value=0.00033 Score=75.04 Aligned_cols=121 Identities=10% Similarity=0.006 Sum_probs=82.5
Q ss_pred hccCCHHHHHHHHHHhhhcC--CCCCC----chhHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHH
Q 003937 525 THGGLVEQGQRYYNMMKNVH--KIKPT----PSHFASMVDLLGRAGLLQEAYNFIENM---------PLEPD-VVAWGSL 588 (785)
Q Consensus 525 ~~~g~~~~a~~~~~~m~~~~--~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l 588 (785)
...|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +-.|+ ..+++.|
T Consensus 320 ~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 399 (490)
T 3n71_A 320 RSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRA 399 (490)
T ss_dssp HTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 34455555555554443211 11121 345566666666666666666666554 23455 4578889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh-----hCCCCchh---HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 589 LSACRVHKNLDLGKIAAEKLLL-----IEPDNSGA---YSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 589 l~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...|...|++++|+.+++++++ +.|+++.+ ...|..++...|++++|..++.++++.
T Consensus 400 a~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 400 GLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987 46776654 457778888999999999999999864
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.64 E-value=0.00011 Score=66.21 Aligned_cols=120 Identities=18% Similarity=0.031 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHCC------CCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchh
Q 003937 479 TVSWTSMIVALAQHGLGEEAIQLFERMLELG------IKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSH 552 (785)
Q Consensus 479 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 552 (785)
...|......+.+.|++++|+..|++.+..- -.|+...+ ..+ -+.+...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~~-----~~~~~~~ 65 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VEL-----DRKNIPL 65 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HHH-----HHTHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HHH-----HHHHHHH
Confidence 3456666677777777777777777766520 01111000 000 0112456
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCc-hhHHHHH
Q 003937 553 FASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNS-GAYSALC 623 (785)
Q Consensus 553 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~ 623 (785)
|..+...|.+.|++++|...+++. .+.| +...|..+..++...|++++|...++++++++|+++ .....+.
T Consensus 66 ~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~ 139 (162)
T 3rkv_A 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMK 139 (162)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 777788888888888888888776 4455 477888899999999999999999999999999877 3333333
No 192
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.58 E-value=0.00031 Score=57.07 Aligned_cols=65 Identities=25% Similarity=0.241 Sum_probs=60.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 581 DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 581 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+...|..+...+...|++++|+..++++++++|+++.+|..++.+|...|++++|...+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57788999999999999999999999999999999999999999999999999999999988653
No 193
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.0006 Score=72.67 Aligned_cols=158 Identities=9% Similarity=-0.046 Sum_probs=117.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCc
Q 003937 487 VALAQHGLGEEAIQLFERMLELGIKPDH----------------ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTP 550 (785)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 550 (785)
..+.+.|++++|++.|.+..+....... ..+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4567889999999999999885322111 136778899999999999999998876533222222
Q ss_pred ----hhHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh------C
Q 003937 551 ----SHFASMVDLLGRAGLLQEAYNFIENM-------PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLI------E 612 (785)
Q Consensus 551 ----~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~ 612 (785)
.+.+.+...+...|..++|.+++++. +..+. ..++..|...+...|++++|...++++... .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 22334445556778999999888765 22333 457788888899999999999999998763 1
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 613 PDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 613 p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
|....++..++.+|...|++++|..++++...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 22345788999999999999999999988753
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.53 E-value=0.00033 Score=58.59 Aligned_cols=77 Identities=17% Similarity=0.083 Sum_probs=65.2
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 568 EAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 568 ~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
+|.+.+++. ...| +...|..+...+...|++++|+..++++++++|++...+..++.+|...|++++|...+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555554 3455 5778888888999999999999999999999999999999999999999999999999998865
No 195
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.50 E-value=6.7e-05 Score=65.72 Aligned_cols=85 Identities=19% Similarity=0.151 Sum_probs=67.6
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhCCCCchhHHHHHHHHHh
Q 003937 561 GRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKN----------LDLGKIAAEKLLLIEPDNSGAYSALCNLYSS 628 (785)
Q Consensus 561 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 628 (785)
.|.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..++++++++|++..+|..++++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3555677777777666 3455 46677767666666554 5699999999999999999999999999998
Q ss_pred cC-----------ChHHHHHHHHHHHhC
Q 003937 629 CG-----------KWEDAANIRKSMKYV 645 (785)
Q Consensus 629 ~g-----------~~~~a~~~~~~m~~~ 645 (785)
.| ++++|.+.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 75 899999999999764
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.50 E-value=0.00017 Score=59.68 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=71.8
Q ss_pred CchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------chhHH
Q 003937 549 TPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDN------SGAYS 620 (785)
Q Consensus 549 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 620 (785)
+...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|+..++++++++|++ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3445667777888888888888888776 3345 57788888888999999999999999999999987 66777
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 003937 621 ALCNLYSSCGKWEDAANIR 639 (785)
Q Consensus 621 ~l~~~~~~~g~~~~a~~~~ 639 (785)
.++.++...|++++|...+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 7888887777777665443
No 197
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.49 E-value=0.00054 Score=71.08 Aligned_cols=111 Identities=11% Similarity=0.021 Sum_probs=81.6
Q ss_pred HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 003937 516 TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEP-DVVAWGSLLSACRV 594 (785)
Q Consensus 516 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~ 594 (785)
.+..+...+.+.|++++|...|++..+.. |.. ...-..+++. ...| +...|..+...+.+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~~~ 285 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACKLK 285 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHHHh
Confidence 45666666777777777777776665410 000 0000111111 1234 35688889999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 595 HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 595 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
.|++++|+..++++++++|+++.++..++.+|...|++++|...+++..+.
T Consensus 286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999998764
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.47 E-value=0.00051 Score=73.72 Aligned_cols=64 Identities=13% Similarity=0.025 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 582 VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 582 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...|..+..++.+.|++++|+..++++++++|++..+|..++.+|...|++++|...+++..+.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4688889999999999999999999999999999999999999999999999999999999764
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.46 E-value=0.0006 Score=53.85 Aligned_cols=81 Identities=22% Similarity=0.292 Sum_probs=61.6
Q ss_pred chhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHH
Q 003937 550 PSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYS 627 (785)
Q Consensus 550 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 627 (785)
...+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345566667777777777777777766 2334 46677888888888899999999999999999988888888888876
Q ss_pred hcC
Q 003937 628 SCG 630 (785)
Q Consensus 628 ~~g 630 (785)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 200
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.40 E-value=3.3e-06 Score=85.94 Aligned_cols=258 Identities=11% Similarity=0.084 Sum_probs=109.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCC
Q 003937 81 SWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGD 160 (785)
Q Consensus 81 ~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 160 (785)
.|+.|..+..+.+++.+|.+.| +...|+..|..+|.+..+.|.+++-+..+...++..-.| ..=+.|+-++++.++
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~~r 131 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKTNR 131 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTSCS
T ss_pred HHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhhCc
Confidence 4555555555555555554443 222344445555555555555555555544333321111 222334444444444
Q ss_pred hhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHhhhcCCC
Q 003937 161 LSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGRLDLARAQFDQMIER 240 (785)
Q Consensus 161 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 240 (785)
+.+-.++.. .|+..-...+-+-+...|.++.|.-+|..+. -|.-|...+.+.|++..|.+.-++ ..
T Consensus 132 L~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArK--An 197 (624)
T 3lvg_A 132 LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARK--AN 197 (624)
T ss_dssp SSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTT--CC
T ss_pred HHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHh--cC
Confidence 433322221 2333333333444444444444444443333 122233333333433333332221 23
Q ss_pred CcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHhcC-CCCcchHHHH
Q 003937 241 DVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRTEF-DATGPVGNAL 319 (785)
Q Consensus 241 ~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l 319 (785)
++.||-.+-.+|...+.+.-|.-.--..+....--++ ++.-|-..|.+++-..+++.-+ |+ .....+++.|
T Consensus 198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~e------lv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTEL 269 (624)
T 3lvg_A 198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEE------LINYYQDRGYFEELITMLEAAL--GLERAHMGMFTEL 269 (624)
T ss_dssp SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSG------GGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHH
T ss_pred ChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHH------HHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHH
Confidence 5556666666666666555443333333222111122 2333455555555544444332 22 2344455556
Q ss_pred HHHHHhcCChHHHHHHHHHhCCC----CC-----chHhHHHHHHHHHhcCCHHHH
Q 003937 320 ISCYAKVGGVEIAQKIVEQSGIS----YL-----NVIAFTTLLDGYIKIGDIGPA 365 (785)
Q Consensus 320 i~~y~~~g~~~~A~~~~~~~~~~----~~-----~~~~~~~li~~~~~~g~~~~A 365 (785)
.-.|+|- ++++-.+.++..-.+ .. ....|.-++-.|.+-.+++.|
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHH
Confidence 5556554 234333333321111 00 333455555555555555544
No 201
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.31 E-value=0.0013 Score=52.22 Aligned_cols=68 Identities=15% Similarity=0.052 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003937 580 PDVVAWGSLLSACRVHKN---LDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 580 p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 647 (785)
+|+..|..+..++...++ .++|..+++++++++|+++.+...++..+...|++++|...|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467778888888755544 69999999999999999999999999999999999999999999987654
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.24 E-value=0.0011 Score=70.89 Aligned_cols=114 Identities=11% Similarity=-0.030 Sum_probs=86.5
Q ss_pred HHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCc---hhHH
Q 003937 559 LLGRAGLLQEAYNFIENM---------PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLL-----IEPDNS---GAYS 620 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~ 620 (785)
.+...|++++|+.++++. +-.|+ ..+++.|...|...|++++|+.+++++++ +.|+++ .++.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999888775 23344 45789999999999999999999999987 356555 4688
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHH
Q 003937 621 ALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIK 690 (785)
Q Consensus 621 ~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 690 (785)
.|+.+|..+|++++|..++++..+.-.. . . ...||...+....+.....++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~----------------l-G~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-T----------------H-GPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-H----------------T-CTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-H----------------h-CCCChHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999998642110 0 1 1358888887776666665554
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.22 E-value=0.0012 Score=69.71 Aligned_cols=116 Identities=9% Similarity=0.023 Sum_probs=85.7
Q ss_pred HHHHhhcCCHHHHHHHHHhC------CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCc---hh
Q 003937 557 VDLLGRAGLLQEAYNFIENM------PLEP---D-VVAWGSLLSACRVHKNLDLGKIAAEKLLL-----IEPDNS---GA 618 (785)
Q Consensus 557 i~~~~~~g~~~~A~~~~~~~------~~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~ 618 (785)
+.-+.+.|++++|++++++. -+.| + ..+++.|...|...|++++|+.+++++++ +.|+++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455677788887777655 1223 2 34788888899999999999999999986 345554 46
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHH
Q 003937 619 YSALCNLYSSCGKWEDAANIRKSMKYVGVKKTQGFSWVQIQNKVHVFGVEDWLHPQRDAIYNKMAKIWDEIK 690 (785)
Q Consensus 619 ~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 690 (785)
+..|+.+|...|++++|..++++..+--. +. -...||...+.+..+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~-~~-----------------lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR-VT-----------------HGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HH-----------------TCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH-Hh-----------------cCCCChHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999998864211 00 12368999998888888887775
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.0013 Score=54.23 Aligned_cols=66 Identities=11% Similarity=0.025 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 580 PDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 580 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
++...|..+...+...|++++|...++++++++|+++..+..++.+|...|++++|...+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356678888899999999999999999999999999999999999999999999999999998764
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.07 E-value=0.014 Score=58.67 Aligned_cols=45 Identities=16% Similarity=0.121 Sum_probs=29.5
Q ss_pred ChhHHHHHHHHHH--HcCC---hHHHHHHHHHHHHCCCCCCHH-HHHHHHHHh
Q 003937 478 ETVSWTSMIVALA--QHGL---GEEAIQLFERMLELGIKPDHI-TYVGVLTAC 524 (785)
Q Consensus 478 ~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~ 524 (785)
+...|...+.+.. ..++ ..+|+.+|++..+ +.|+.. .+..+.-++
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~ 243 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVD 243 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 6677777776643 3333 5789999999998 688753 454444444
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.07 E-value=0.0061 Score=52.74 Aligned_cols=88 Identities=9% Similarity=-0.080 Sum_probs=48.5
Q ss_pred HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHh----c
Q 003937 558 DLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRV----HKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSS----C 629 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~ 629 (785)
.+|...+..++|.++|++.--.-+...+..|...|.. .++.++|...++++.+. .++..+..|+.+|.. .
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~ 110 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVV 110 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCC
Confidence 3333333444444444443112234444444444444 55666666666666554 355666777777776 6
Q ss_pred CChHHHHHHHHHHHhCCC
Q 003937 630 GKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 630 g~~~~a~~~~~~m~~~g~ 647 (785)
+++++|.+++++..+.|.
T Consensus 111 ~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 111 KNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp CCHHHHHHHHHHHHHTTC
T ss_pred cCHHHHHHHHHHHHHCCC
Confidence 777777777777766554
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.04 E-value=0.00044 Score=60.51 Aligned_cols=99 Identities=18% Similarity=0.047 Sum_probs=59.0
Q ss_pred HHcCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHH
Q 003937 490 AQHGLGEEAIQLFERMLELGIKPDH-ITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQE 568 (785)
Q Consensus 490 ~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (785)
.+.+.+++|++.+++..+ +.|+. ..|..+..++...++++.+.... +.+++
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------~~~~e 64 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAK--------------------------QMIQE 64 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------HHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhH--------------------------hHHHH
Confidence 344556666666666666 34533 45555555555554433111111 01345
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhhCCCCc
Q 003937 569 AYNFIENM-PLEPD-VVAWGSLLSACRVH-----------KNLDLGKIAAEKLLLIEPDNS 616 (785)
Q Consensus 569 A~~~~~~~-~~~p~-~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~ 616 (785)
|+..|++. .+.|+ ..+|..+..+|... |++++|+..|+++++++|++.
T Consensus 65 Ai~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 65 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 55555555 44553 45666666666554 589999999999999999664
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.01 E-value=0.0066 Score=66.63 Aligned_cols=148 Identities=11% Similarity=0.074 Sum_probs=119.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCC----------HHHHHHHHHHhhhcCCCCCCchhHHHHHHHHh
Q 003937 493 GLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGL----------VEQGQRYYNMMKNVHKIKPTPSHFASMVDLLG 561 (785)
Q Consensus 493 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 561 (785)
...++|++.++++.+ +.|+.. .|+.--.++.+.|. ++++.+.++.+.+. -+-+...|..-..++.
T Consensus 43 ~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 43 ELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS 118 (567)
T ss_dssp CCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 346789999999999 678765 56655555666666 89999999999862 2344667777777888
Q ss_pred hcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhc-------
Q 003937 562 RAG--LLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHK-NLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSC------- 629 (785)
Q Consensus 562 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 629 (785)
+.| ++++|+++++++ ...| +...|+.-.......| ..+++.+.++++++.+|.|..+|.....++.+.
T Consensus 119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 889 779999999998 4455 6889998888888888 899999999999999999999999999988774
Q ss_pred -------CChHHHHHHHHHHHh
Q 003937 630 -------GKWEDAANIRKSMKY 644 (785)
Q Consensus 630 -------g~~~~a~~~~~~m~~ 644 (785)
++++++.+++++...
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHh
Confidence 567888888877754
No 209
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.96 E-value=0.0027 Score=49.90 Aligned_cols=64 Identities=23% Similarity=0.300 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 582 VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 582 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
...|..+...+...|++++|...++++++..|+++..+..++.+|...|++++|...+++..+.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 5578888888999999999999999999999999999999999999999999999999998764
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.90 E-value=0.024 Score=48.85 Aligned_cols=110 Identities=15% Similarity=0.052 Sum_probs=54.8
Q ss_pred ChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh----cCCHHHHH
Q 003937 392 LNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMYSK----AGNINAAR 467 (785)
Q Consensus 392 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~----~g~~~~A~ 467 (785)
++++|++.|++..+.| .|+.. +-..+.....+++|.+.+....+.| +......|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666665554 22222 3333344444555555555555543 33444445555554 45555555
Q ss_pred HHHHhcccCCChhHHHHHHHHHHH----cCChHHHHHHHHHHHHCC
Q 003937 468 RVFNLIHWRQETVSWTSMIVALAQ----HGLGEEAIQLFERMLELG 509 (785)
Q Consensus 468 ~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 509 (785)
+.|++.....+..++..|...|.. .++.++|++.|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 555554433355555555555554 455555555555555543
No 211
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.76 E-value=0.0041 Score=51.72 Aligned_cols=80 Identities=13% Similarity=0.015 Sum_probs=50.4
Q ss_pred HHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 533 GQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 533 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
+...|+...+ .-+.+...+..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+.++|...++++++
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444544443 11223455566666666667777776666665 2334 356777777778888888888888888887
Q ss_pred hCCC
Q 003937 611 IEPD 614 (785)
Q Consensus 611 ~~p~ 614 (785)
+.|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 7663
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.75 E-value=0.0019 Score=67.93 Aligned_cols=82 Identities=10% Similarity=-0.019 Sum_probs=62.8
Q ss_pred cCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCc---hhHHHHHH
Q 003937 563 AGLLQEAYNFIENM---------PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLL-----IEPDNS---GAYSALCN 624 (785)
Q Consensus 563 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~ 624 (785)
.|++++|+.++++. +-.|+ ..+++.|...|...|++++|+.+++++++ +.|+++ .+++.|+.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 35666666665553 22344 35788888999999999999999999986 355554 46888999
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 003937 625 LYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 625 ~~~~~g~~~~a~~~~~~m~~ 644 (785)
+|..+|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 99999999999999998864
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.62 E-value=0.0048 Score=49.85 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=37.4
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 478 ETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPD-HITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 478 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
+...|..+...|...|++++|+..|++..+ ..|+ ...|..+..++...|++++|...+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 445566666666666666666666666665 3343 23555566666666666666666665543
No 214
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.58 E-value=0.0042 Score=63.71 Aligned_cols=212 Identities=13% Similarity=0.085 Sum_probs=145.6
Q ss_pred CCChHHHHHHHHHhhcCCCcchHHHHHHHHHHcCCCCchhHHHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHH
Q 003937 10 ISPLEFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSVFLKNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAY 89 (785)
Q Consensus 10 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~ 89 (785)
.-|+..|..++.++.+.|.+++....+.-..+. .-++.+-+.|+-+|++.+++.+-.++.. .||+.--..+..-+
T Consensus 80 A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrc 154 (624)
T 3lvg_A 80 ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRC 154 (624)
T ss_dssp CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHH
Confidence 346678888999999999998888877665544 3455677889999999998765443332 35666666677778
Q ss_pred HccCChhHHHHHHhhCCC------------------------CCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCCh
Q 003937 90 AKQGRLDLACEVFNLMPN------------------------RDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQ 145 (785)
Q Consensus 90 ~~~g~~~~A~~~f~~m~~------------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 145 (785)
...|.++.|.-+|..+.. .++.+|-.+-.+|...+.+.-|.-.--.+. +.||
T Consensus 155 f~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad- 230 (624)
T 3lvg_A 155 YDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD- 230 (624)
T ss_dssp HHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS-
T ss_pred HHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH-
Confidence 888888888888877653 356688888888888888877765544444 2222
Q ss_pred hhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCC----CC-------CcchH
Q 003937 146 FTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMR----LK-------NVSSW 214 (785)
Q Consensus 146 ~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~-------~~~~~ 214 (785)
....++..|-..|.+++-..+++..+... .....+++-|.-.|+|- +.++-.+-++... -| ....|
T Consensus 231 -eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW 307 (624)
T 3lvg_A 231 -ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLW 307 (624)
T ss_dssp -CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCH
T ss_pred -HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhH
Confidence 23345566777788888777777665322 45677888888888886 3444444443322 22 34578
Q ss_pred HHHHHHHHhcCChHHHHHH
Q 003937 215 NVVVSLHIHSGRLDLARAQ 233 (785)
Q Consensus 215 ~~li~~~~~~g~~~~A~~l 233 (785)
..++-.|++-..+|.|...
T Consensus 308 ~ElvfLY~~ydE~DnA~lt 326 (624)
T 3lvg_A 308 AELVFLYDKYEEYDNAIIT 326 (624)
T ss_dssp HHHHHHHHHHTCHHHHHHT
T ss_pred HHHHHHHhcchhHHHHHHH
Confidence 8888888888888876543
No 215
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.55 E-value=0.01 Score=62.30 Aligned_cols=69 Identities=12% Similarity=0.017 Sum_probs=47.3
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCC
Q 003937 551 SHFASMVDLLGRAGLLQEAYNFIENM---------PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLL-----IEPDN 615 (785)
Q Consensus 551 ~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~ 615 (785)
.+++.|..+|...|++++|+.++++. +-.|+ ..+++.|...|...|++++|+.+++++++ +.|++
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~H 420 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDH 420 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 34555555666666666665555554 23455 45788888889999999999999999877 46776
Q ss_pred chhH
Q 003937 616 SGAY 619 (785)
Q Consensus 616 ~~~~ 619 (785)
+.+-
T Consensus 421 p~~~ 424 (433)
T 3qww_A 421 PYIS 424 (433)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 6543
No 216
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.45 E-value=0.02 Score=60.31 Aligned_cols=70 Identities=13% Similarity=-0.076 Sum_probs=46.8
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----hCCCCc
Q 003937 552 HFASMVDLLGRAGLLQEAYNFIENM---------PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLL-----IEPDNS 616 (785)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~p~~~ 616 (785)
+++.|..+|...|++++|+.++++. +..|+ ..+++.|...|...|++++|+.+++++++ +.|+++
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 4455555555555555555555543 23454 45788888889999999999999998877 477776
Q ss_pred hhHHH
Q 003937 617 GAYSA 621 (785)
Q Consensus 617 ~~~~~ 621 (785)
.+-.+
T Consensus 411 ~~~~~ 415 (429)
T 3qwp_A 411 LIEDL 415 (429)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.39 E-value=0.03 Score=56.34 Aligned_cols=133 Identities=12% Similarity=0.010 Sum_probs=92.6
Q ss_pred CCCCHHHHHHHHHHhhc-----cCCHHHHHHHHHHhhhcCCCCCC-chhHHHHHHHHh----hcC-------CHHHHHHH
Q 003937 510 IKPDHITYVGVLTACTH-----GGLVEQGQRYYNMMKNVHKIKPT-PSHFASMVDLLG----RAG-------LLQEAYNF 572 (785)
Q Consensus 510 ~~p~~~t~~~ll~a~~~-----~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~----~~g-------~~~~A~~~ 572 (785)
.+.+...|...+.+... .....+|..+|++..+ +.|+ ...|..+..+|. ..+ .+..|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 45566778887776432 2345789999999886 4676 234443333331 111 12233333
Q ss_pred HHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 573 IENMPLE-PDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 573 ~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
...+... .++.+|.++...+...|+++.|...++++++++| +...|..++.++.-.|++++|...+++.....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3333333 4677888887777778999999999999999998 67788999999999999999999999887643
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.33 E-value=0.0099 Score=47.61 Aligned_cols=61 Identities=18% Similarity=0.179 Sum_probs=29.5
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 558 DLLGRAGLLQEAYNFIENM-PLEP-DVV-AWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 558 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
..+.+.|++++|.+.+++. ...| +.. .|..+...+...|++++|...++++++++|++..+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 3444555555555555444 2223 233 44444444555555555555555555555544443
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.24 E-value=0.021 Score=45.59 Aligned_cols=85 Identities=14% Similarity=0.047 Sum_probs=48.7
Q ss_pred HHHhhccCCHHHHHHHHHHhhhcCCCCCCch-hHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 003937 521 LTACTHGGLVEQGQRYYNMMKNVHKIKPTPS-HFASMVDLLGRAGLLQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKN 597 (785)
Q Consensus 521 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~ 597 (785)
...+...|++++|...+++..+. .+.+.. .+..+...|.+.|++++|.+.|++. ...|+ ...|.. +.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 44556667777777777776642 122344 5666667777777777777777665 33443 222211 34
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 003937 598 LDLGKIAAEKLLLIEPDN 615 (785)
Q Consensus 598 ~~~a~~~~~~~~~~~p~~ 615 (785)
+.++...+++....+|++
T Consensus 77 ~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHhccCccc
Confidence 455666666665555543
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.18 E-value=0.44 Score=39.45 Aligned_cols=141 Identities=10% Similarity=0.009 Sum_probs=95.7
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHH
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQE 568 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 568 (785)
+.-.|..++..++..+.... .+..-|+-++--....-+-+-..+.++.+-+.+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 44567777777777777652 22233333333333334445555555555432222 34666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 003937 569 AYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVK 648 (785)
Q Consensus 569 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 648 (785)
...-+-.++ .+......-+......|.-++-..+...++..+|.++....-++++|.+.|+..+|.+++.+.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 666666664 244445666778889999999999999876666668999999999999999999999999999999985
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.03 E-value=0.047 Score=47.10 Aligned_cols=65 Identities=12% Similarity=-0.024 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhC-C-CCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 580 PDVVAWGSLLSACRVHK---NLDLGKIAAEKLLLIE-P-DNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 580 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
++..+...+..++.+.+ +.++|+.+++.+++.+ | ++...+..|+-+|.+.|++++|.++++...+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 56666667777777766 5567888888877776 6 3466777777778888888888888887765
No 222
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.94 E-value=0.39 Score=55.46 Aligned_cols=100 Identities=19% Similarity=0.165 Sum_probs=54.2
Q ss_pred HhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHH
Q 003937 222 IHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIH 301 (785)
Q Consensus 222 ~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 301 (785)
.+.|++++|.++.+.+ .+...|..+...+.+.|+++.|.+.|..+ .. |..+...+...++.+....+-
T Consensus 663 l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~-~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNA-HD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHH-TC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHc-cC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 4445555555554443 24567777777777777777777777776 32 333333444445555444443
Q ss_pred HHHHHhcCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 003937 302 AYIIRTEFDATGPVGNALISCYAKVGGVEIAQKIVEQS 339 (785)
Q Consensus 302 ~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 339 (785)
......| -++.-...|.++|++++|.+++.++
T Consensus 731 ~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 731 KDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3333332 1233444566667666666655543
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.89 E-value=0.028 Score=54.11 Aligned_cols=87 Identities=10% Similarity=0.061 Sum_probs=70.2
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhCCCC-chhHHHHHHHHHhc-CChHH
Q 003937 566 LQEAYNFIENM-PLEPD---VVAWGSLLSACRV-----HKNLDLGKIAAEKLLLIEPDN-SGAYSALCNLYSSC-GKWED 634 (785)
Q Consensus 566 ~~~A~~~~~~~-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 634 (785)
..+|...+++. .+.|+ -..|..|...|.+ -|+.++|++.|++++++.|+. ..+++.++..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 44555555555 45676 4577888877877 599999999999999999974 99999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 003937 635 AANIRKSMKYVGVKKTQG 652 (785)
Q Consensus 635 a~~~~~~m~~~g~~~~~~ 652 (785)
|.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999998876664454
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.61 E-value=0.26 Score=56.97 Aligned_cols=102 Identities=16% Similarity=0.081 Sum_probs=55.4
Q ss_pred HHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 003937 456 MYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQR 535 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 535 (785)
....+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...+
T Consensus 661 ~~l~~~~~~~A~~~~~~~~---~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES---AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred hhhhcCCHHHHHHHHHhhC---cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 3455677777777765553 556777777777777777777777776643 2233333344455444443
Q ss_pred HHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC
Q 003937 536 YYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM 576 (785)
Q Consensus 536 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 576 (785)
+-+.... .| .++.-...|.+.|++++|.+++.++
T Consensus 729 ~~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 729 LAKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3333322 11 1233333444555555555555544
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.92 E-value=0.15 Score=41.19 Aligned_cols=69 Identities=17% Similarity=0.142 Sum_probs=47.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHH
Q 003937 554 ASMVDLLGRAGLLQEAYNFIENM-----P----LEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSAL 622 (785)
Q Consensus 554 ~~li~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 622 (785)
-.|...+.+.|+++.|...++.. + -.+...++..|..++.+.|+++.|...++++++++|++..+...+
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 34445555555555555555443 0 123456788888999999999999999999999999887654433
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.86 E-value=0.84 Score=40.40 Aligned_cols=130 Identities=14% Similarity=0.145 Sum_probs=87.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHH
Q 003937 454 ITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a 533 (785)
.+....+|+++.|.++.+.+. +...|..|......+|+.+-|.+.|.+... |..+.-.|...|+.+.-
T Consensus 12 F~LAL~lg~l~~A~e~a~~l~---~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKLN---DSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHhC---CHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 445567899999999888773 678899999999999999999999887654 34454555666776665
Q ss_pred HHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 003937 534 QRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKL 608 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 608 (785)
..+-+.... .| -++.-...+.-.|+++++.+++.+.+.-|.... ..+.+|-.+.|.++.+.+
T Consensus 80 ~kla~iA~~-~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQT-RE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHH-Cc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 554443332 11 144455556678999999999888763332221 124467777777776655
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.70 E-value=0.12 Score=40.69 Aligned_cols=67 Identities=16% Similarity=0.024 Sum_probs=48.9
Q ss_pred CCchhHHHHHHHHhhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003937 548 PTPSHFASMVDLLGRAGL---LQEAYNFIENM-PLEPD-VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 548 p~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
++...+..+..++...++ .++|..++++. ...|+ +..+..+...+.+.|++++|+..++++++.+|+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 455666666666654443 67888888777 45664 556666777788889999999999999888886
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.98 E-value=0.19 Score=43.35 Aligned_cols=71 Identities=18% Similarity=0.055 Sum_probs=44.8
Q ss_pred CCchhHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 548 PTPSHFASMVDLLGRAG---LLQEAYNFIENM-PLE-P--DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 548 p~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
++..+.-.+..++.+++ +.+++..++++. ... | +...+-.|.-+|.+.|++++|.+.++++++++|+|..+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 107 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 34444444444555544 334555554444 112 3 23455567777899999999999999999999976543
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.52 E-value=2 Score=38.03 Aligned_cols=21 Identities=5% Similarity=-0.096 Sum_probs=12.0
Q ss_pred HHHHHhcCCHHHHHHHHHhcc
Q 003937 454 ITMYSKAGNINAARRVFNLIH 474 (785)
Q Consensus 454 i~~y~~~g~~~~A~~~~~~~~ 474 (785)
...+.-.|+++++.++|.+..
T Consensus 96 f~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 96 LLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHCC
Confidence 334445566666666665554
No 230
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.81 E-value=0.32 Score=54.26 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=49.6
Q ss_pred HHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHH
Q 003937 591 ACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 591 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 642 (785)
-|...|+++.|+.+++++...-|.+-.+|..|+.+|.+.|+|+.|.-.++.+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3678999999999999999999999999999999999999999999999988
No 231
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.61 E-value=17 Score=41.43 Aligned_cols=254 Identities=10% Similarity=0.025 Sum_probs=134.4
Q ss_pred HHHhcCChHHHHHHHHHhCCC----CCchHhHHHHHHHHHhcCCHHHHHHHHHhcCC-CC----------HhHHHHHHHH
Q 003937 322 CYAKVGGVEIAQKIVEQSGIS----YLNVIAFTTLLDGYIKIGDIGPARRIFDSLRD-RD----------VVAWTAMLVG 386 (785)
Q Consensus 322 ~y~~~g~~~~A~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~-~~----------~~~~~~li~~ 386 (785)
+....|+.++++.++++.... .+.+..-..+.-+....|..+++...+..... .+ +..-.++.-|
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 455678888888888775442 22334444555666666666666665554332 22 1122233334
Q ss_pred HHHcCCh-hHHHHHHHHHHHcCCCCCHhh--HHH--HHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH--Hh
Q 003937 387 YEQNGLN-KDAVELFRSMVREGPKPNNYT--LSA--MLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY--SK 459 (785)
Q Consensus 387 ~~~~g~~-~~A~~~~~~m~~~g~~p~~~t--~~~--ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y--~~ 459 (785)
.+-.|.. +++.+.+..+.... +... ... +-..+...|+-+....++..+.... +..+...+..++ .-
T Consensus 463 la~~GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 4444432 46677777766532 2111 111 1222345567777777777666532 223333333333 36
Q ss_pred cCCHHHHHHHHHhcccCCChhH-HHH---HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHH
Q 003937 460 AGNINAARRVFNLIHWRQETVS-WTS---MIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQR 535 (785)
Q Consensus 460 ~g~~~~A~~~~~~~~~~p~~~~-~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~ 535 (785)
.|+.+.+..+.+.+....|... |.+ +.-+|+..|+.....++++.+... ...+......+.-+....|..+.+.+
T Consensus 537 ~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 537 YGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 6888888888877764434433 432 334567777876666688888763 12222222222224445666666667
Q ss_pred HHHHhhhcCCCCCCchhHHHHHHHHhhcCCH-HHHHHHHHhCCCCCCHHH
Q 003937 536 YYNMMKNVHKIKPTPSHFASMVDLLGRAGLL-QEAYNFIENMPLEPDVVA 584 (785)
Q Consensus 536 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~p~~~~ 584 (785)
+++.+.+ ...|.+..-.++.-+..-.|.. .+|.+.+..+.-.+|..+
T Consensus 616 lv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~V 663 (963)
T 4ady_A 616 IVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFV 663 (963)
T ss_dssp HTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHH
T ss_pred HHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHH
Confidence 7765554 2345555444444444444433 567777777744555443
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.35 E-value=0.85 Score=37.73 Aligned_cols=65 Identities=12% Similarity=-0.059 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhhC-C-CCchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 580 PDVVAWGSLLSACRVHKNLDL---GKIAAEKLLLIE-P-DNSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 580 p~~~~~~~ll~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
|+..+-..+..++.+..+... ++.+++.+...+ | ........|+-++.+.|++++|.++.+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444443333 555555555443 3 2333444555555555666666555555543
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.86 E-value=0.21 Score=48.20 Aligned_cols=77 Identities=14% Similarity=0.205 Sum_probs=41.5
Q ss_pred hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhhc-----cCCHHHHHHHHHHhhhcCCCCC--CchhHHHHHHHHhhc-
Q 003937 495 GEEAIQLFERMLELGIKPD---HITYVGVLTACTH-----GGLVEQGQRYYNMMKNVHKIKP--TPSHFASMVDLLGRA- 563 (785)
Q Consensus 495 ~~~A~~~~~~m~~~g~~p~---~~t~~~ll~a~~~-----~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~- 563 (785)
...|...+++.++ +.|+ ...|..+...|.. .|+.++|.+.|++..+ +.| +..++..+.+.|++.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhc
Confidence 3455566666666 5565 2355555555555 2666666666666554 334 244455555555553
Q ss_pred CCHHHHHHHHHhC
Q 003937 564 GLLQEAYNFIENM 576 (785)
Q Consensus 564 g~~~~A~~~~~~~ 576 (785)
|+.++|.+.+++.
T Consensus 254 gd~~~a~~~L~kA 266 (301)
T 3u64_A 254 NNRAGFDEALDRA 266 (301)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5555555555544
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.81 E-value=0.74 Score=36.92 Aligned_cols=65 Identities=12% Similarity=-0.008 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-------CCCchhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 003937 581 DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIE-------PDNSGAYSALCNLYSSCGKWEDAANIRKSMKYV 645 (785)
Q Consensus 581 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 645 (785)
+..-...|...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 34455678888999999999999999998852 234567899999999999999999999998753
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=90.03 E-value=7.9 Score=32.62 Aligned_cols=66 Identities=8% Similarity=-0.071 Sum_probs=43.3
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 579 EPDVVAWGSLLSACRVHK---NLDLGKIAAEKLLLIEPD-NSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 579 ~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
.|+..+--.+..++.+.. +..+++.+++.+....|. .......|+-++.+.|++++|.++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 355555555555555444 345677777777777664 335566677778888888888888777765
No 236
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=88.87 E-value=30 Score=37.74 Aligned_cols=115 Identities=11% Similarity=0.073 Sum_probs=70.2
Q ss_pred CChHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHH
Q 003937 493 GLGEEAIQLFERMLELG-IKPDHI--TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEA 569 (785)
Q Consensus 493 g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 569 (785)
.+.+.|..+|......+ +.+... ....+.......+...++...+..... ..++.....-.+..-.+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM---RSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH---TCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc---cCCChHHHHHHHHHHHHCCCHHHH
Confidence 37889999998886543 322222 233333344455535566666665443 123333344455555578999999
Q ss_pred HHHHHhCCCCC-CHHHHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 570 YNFIENMPLEP-DVVAWG-SLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 570 ~~~~~~~~~~p-~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
...|+.|+-.+ +..-|. =+..+....|+.++|..+++++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999996433 223232 233356678999999999999875
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=87.73 E-value=3.3 Score=34.23 Aligned_cols=34 Identities=24% Similarity=0.074 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchh
Q 003937 585 WGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGA 618 (785)
Q Consensus 585 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 618 (785)
.-.|.-++.+.|+++.|.+.++.+++.+|+|..+
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence 3445667889999999999999999999977644
No 238
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=86.38 E-value=13 Score=30.90 Aligned_cols=55 Identities=11% Similarity=0.041 Sum_probs=22.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhh
Q 003937 486 IVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMK 541 (785)
Q Consensus 486 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 541 (785)
++.+...|+-++-.+++..+.. +.+|++.....+..||.+.|+..++.+++.+.-
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3334444444444444444222 123344444444444444444444444444443
No 239
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.73 E-value=1.8 Score=44.48 Aligned_cols=68 Identities=15% Similarity=0.095 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCccCCc
Q 003937 585 WGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK-----YVGVKKTQG 652 (785)
Q Consensus 585 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~g~~~~~~ 652 (785)
...++..+...|+.+++...++.++..+|-+...+..|+.+|.++|+..+|.+.|+... +.|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 34566677888999999999999999999998999999999999999999999988875 458876554
No 240
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=84.93 E-value=49 Score=36.10 Aligned_cols=171 Identities=10% Similarity=0.009 Sum_probs=92.1
Q ss_pred HHHHHHHHHhhcCCCcchHHHHHHHHHHcCCCCch-hHHHHHHHHHHhcCChhHHHHHhhcCCCC--ChhhHHHHHHHHH
Q 003937 14 EFYAHLLQSNLKSRNPFVGKLVHARIIKCGLHLSV-FLKNSLMNFYAKTESISYAKKVFDEMPVK--TLCSWNTILSAYA 90 (785)
Q Consensus 14 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~ 90 (785)
..|....++. +.|+...+..+-..+. +.+... ..|..|...+ ......+....+..-+.. ....-+..+..+.
T Consensus 8 ~~~~~a~~a~-~~~~~~~~~~l~~~l~--~~pL~~yl~y~~l~~~l-~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~ 83 (618)
T 1qsa_A 8 SRYAQIKQAW-DNRQMDVVEQMMPGLK--DYPLYPYLEYRQITDDL-MNQPAVTVTNFVRANPTLPPARTLQSRFVNELA 83 (618)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHSGGGT--TSTTHHHHHHHHHHHTG-GGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHhhc--CCCcHHHHHHHHHHhCc-ccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHH
Confidence 3445544443 4577766655544332 111111 1233332222 223556666666665532 1223455667777
Q ss_pred ccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHH
Q 003937 91 KQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSF 170 (785)
Q Consensus 91 ~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 170 (785)
+.+++.....++.. +..+...--....+....|+..+|......+-..|-. ..... ..++..
T Consensus 84 ~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c----------------~~l~~~ 145 (618)
T 1qsa_A 84 RREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNAC----------------DKLFSV 145 (618)
T ss_dssp HTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHH----------------HHHHHH
T ss_pred hCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHH----------------HHHHHH
Confidence 88888888887766 4334444444566777788888888877777655521 22223 334444
Q ss_pred HHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCC
Q 003937 171 VVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMR 207 (785)
Q Consensus 171 ~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 207 (785)
..+.|.-.+..++.. +......|+...|..+...++
T Consensus 146 ~~~~g~lt~~~~~~R-~~~al~~~~~~~a~~l~~~l~ 181 (618)
T 1qsa_A 146 WRASGKQDPLAYLER-IRLAMKAGNTGLVTVLAGQMP 181 (618)
T ss_dssp HHHTTCSCHHHHHHH-HHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHCCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhCC
Confidence 444443322233333 355556678888888877774
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=84.71 E-value=32 Score=33.88 Aligned_cols=167 Identities=15% Similarity=0.121 Sum_probs=97.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHCCCCCCHHHHHHHHHHhh
Q 003937 450 SNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQL----FERMLELGIKPDHITYVGVLTACT 525 (785)
Q Consensus 450 ~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~ 525 (785)
|.++..-|.+.+++++|.+++-.-. ..+.++|+...|.++ ++-..+.++++|..+...++..+.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3566677888899998888765432 124445554444333 344555677777777666666655
Q ss_pred ccCCHH-HHHHHHHHhhh---cCC--CCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 003937 526 HGGLVE-QGQRYYNMMKN---VHK--IKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLD 599 (785)
Q Consensus 526 ~~g~~~-~a~~~~~~m~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 599 (785)
....-+ .=..+.+.+.+ +.| -.-|+.....+...|.+.|++.+|+.-|- .+-++.+..+..++.-+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 443211 11112222211 122 23456666778899999999999998874 3434445677666666554443
Q ss_pred HHHHHHHHHHhhCCCCchhHHH-HHHHHHhcCChHHHHHHHHHHHh
Q 003937 600 LGKIAAEKLLLIEPDNSGAYSA-LCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 600 ~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
|.....|.+ .+--|...|+...|..+++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 222223322 23346778899999888777654
No 242
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=84.13 E-value=9.2 Score=32.56 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=22.9
Q ss_pred CChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCC
Q 003937 391 GLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEAS 445 (785)
Q Consensus 391 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 445 (785)
++.++|.++|+.++..+-+- ...+......-.+.|++..|+++++..+..+..|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 45555555555554432111 2222222222334455555555555555444333
No 243
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=82.63 E-value=3.7 Score=34.97 Aligned_cols=53 Identities=8% Similarity=-0.100 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 003937 596 KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVK 648 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~ 648 (785)
+|.++|..+|+.++.+...=+..+...+.--.++|+...|.+++.+....+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 67777777777776663333445555566667778888888888877765543
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=81.13 E-value=9.1 Score=31.78 Aligned_cols=65 Identities=8% Similarity=-0.072 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhCCC-CchhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 003937 580 PDVVAWGSLLSACRVHK---NLDLGKIAAEKLLLIEPD-NSGAYSALCNLYSSCGKWEDAANIRKSMKY 644 (785)
Q Consensus 580 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 644 (785)
|+..+--.+..++.+.. +..+|+.+++.+...+|. .......|+-++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44444444444444433 334566666666666663 244566666667777777777777766654
No 245
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=80.99 E-value=5.9 Score=30.93 Aligned_cols=62 Identities=15% Similarity=0.228 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHH
Q 003937 495 GEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVD 558 (785)
Q Consensus 495 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 558 (785)
.-+..+-++.+....+-|++....+.|.||-+.+++.-|.++|+.++. ...+...+|..+++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~--K~~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD--KAGPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH--HhcCchhhHHHHHH
Confidence 445666677777778899999999999999999999999999998875 34444556777764
No 246
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=79.44 E-value=16 Score=28.37 Aligned_cols=82 Identities=16% Similarity=0.143 Sum_probs=54.8
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHH
Q 003937 51 KNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAI 130 (785)
Q Consensus 51 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~ 130 (785)
-+++.+.+...+. +++..+ .-+..+...|++++|..+.+.+..||...|-+|-.. +.|..+++.
T Consensus 26 A~tIAdwL~~~~~-~E~v~l-------------IR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le 89 (116)
T 2p58_C 26 ANCIAEWLHLKGE-EEAVQL-------------IRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALE 89 (116)
T ss_dssp HHHHHHHHHHTTC-HHHHHH-------------HHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHH-------------HHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHH
Confidence 3455555555555 544433 223556788999999999999999999999887653 567777777
Q ss_pred HHHHHhHHCCCCCChhhHH
Q 003937 131 RMFVEMVQDQVLPTQFTVT 149 (785)
Q Consensus 131 ~~~~~m~~~g~~p~~~t~~ 149 (785)
.-+.++-.+| .|...+|.
T Consensus 90 ~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 90 SRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 7777776665 44444443
No 247
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=79.11 E-value=15 Score=28.48 Aligned_cols=82 Identities=15% Similarity=0.121 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHH
Q 003937 51 KNSLMNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAI 130 (785)
Q Consensus 51 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~ 130 (785)
-+++.+.+...+. +++..+ .-+..+...|++++|..+.+.+..||...|-+|-. .+.|..+++.
T Consensus 25 A~tIAdwL~~~~~-~E~v~l-------------IR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le 88 (115)
T 2uwj_G 25 ALCIAEWLERLGQ-DEAARL-------------IRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALD 88 (115)
T ss_dssp HHHHHHHHHHTTC-HHHHHH-------------HHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHH-------------HHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHH
Confidence 3455555555555 544433 22455778899999999999999999999987755 4678888888
Q ss_pred HHHHHhHHCCCCCChhhHH
Q 003937 131 RMFVEMVQDQVLPTQFTVT 149 (785)
Q Consensus 131 ~~~~~m~~~g~~p~~~t~~ 149 (785)
.-+.++-.+| .|...+|.
T Consensus 89 ~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 89 RRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 8777777666 44444443
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=77.92 E-value=6.1 Score=44.11 Aligned_cols=57 Identities=19% Similarity=0.117 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCCHHHHHHHHHhcC
Q 003937 317 NALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGDIGPARRIFDSLR 373 (785)
Q Consensus 317 ~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~f~~~~ 373 (785)
..-.+.+...|+++-|+++-++.....| +..+|..|..+|.+.|+++.|+-.++.++
T Consensus 341 ~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 341 NIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3345667778999999999998776666 67899999999999999999999999987
No 249
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=77.62 E-value=39 Score=30.23 Aligned_cols=133 Identities=12% Similarity=0.103 Sum_probs=65.6
Q ss_pred HHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHH
Q 003937 55 MNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFV 134 (785)
Q Consensus 55 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 134 (785)
+..+.+.+.......+.+.+..++...-...+.++.+.|..+....+.+.+..++...-...+.++.+.++.+ +...+.
T Consensus 35 ~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~ 113 (201)
T 3ltj_A 35 AYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER-AVEPLI 113 (201)
T ss_dssp HHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHH
T ss_pred HHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHH-HHHHHH
Confidence 3333333433333333444444555555555566666666555555555555666655566666666666543 333333
Q ss_pred HhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC
Q 003937 135 EMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGD 195 (785)
Q Consensus 135 ~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~ 195 (785)
.+.. .++...-...+.+++..++.+....+ ..+.+ .++..+-...+.++.+.|.
T Consensus 114 ~~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L-~~~l~---d~~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 114 KALK---DEDWFVRIAAAFALGEIGDERAVEPL-IKALK---DEDGWVRQSAADALGEIGG 167 (201)
T ss_dssp HHTT---CSSHHHHHHHHHHHHHHTCGGGHHHH-HHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHc---CCCHHHHHHHHHHHHHhCCHHHHHHH-HHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 3332 34554445555555555543322222 22221 3455555666666666554
No 250
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=76.35 E-value=44 Score=30.17 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=6.9
Q ss_pred chhHHHHHHHHHHhcCC
Q 003937 47 SVFLKNSLMNFYAKTES 63 (785)
Q Consensus 47 ~~~~~~~ll~~~~~~g~ 63 (785)
+..+-...+..+.+.|.
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333334444444443
No 251
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=76.16 E-value=16 Score=28.58 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=40.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHH
Q 003937 569 AYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALC 623 (785)
Q Consensus 569 A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 623 (785)
++.-+-.+.+-|++.+..+-+.+|++-+++..|.++++-+...-.+....|--++
T Consensus 32 glN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 32 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3333344467899999999999999999999999999988765433344455443
No 252
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.52 E-value=26 Score=41.81 Aligned_cols=165 Identities=9% Similarity=-0.038 Sum_probs=102.8
Q ss_pred HHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchh
Q 003937 216 VVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLK 295 (785)
Q Consensus 216 ~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~ 295 (785)
.++..+.+.+..+.+.++..-.. .+...--.+...|...|++++|.+.|.+. ..|+.++......+ .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-~~~~~~yl~g~~~L~~ge~~~A~~~F~ka--a~~~~~~~~l~~~~----------~ 883 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFAVL----------R 883 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCSCTTCCCSCSSH----------H
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-CCcHHHHHHHHHHHhcCCHHHHHHHHHHH--hhhhcccchhhhhh----------c
Confidence 45566667788887777666554 34444445667888999999999999886 33443332211000 0
Q ss_pred hHHHHHHHHHHhcC--CCCcchHHHHHHHHHhcCChHHHHHHHHH----hCCCCCch--HhHHHHHHHHHhcCCHHHHHH
Q 003937 296 LGKQIHAYIIRTEF--DATGPVGNALISCYAKVGGVEIAQKIVEQ----SGISYLNV--IAFTTLLDGYIKIGDIGPARR 367 (785)
Q Consensus 296 ~a~~~~~~~~~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~----~~~~~~~~--~~~~~li~~~~~~g~~~~A~~ 367 (785)
. ...+..... ..-..-|.-++..+.+.+.++.+.++-.. ....+++. ..|..+.+.+.+.|++++|..
T Consensus 884 ---~-~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 ---E-FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp ---H-HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred ---c-cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 011111110 11123456677788888888887776543 22233322 358899999999999999999
Q ss_pred HHHhcCCC--CHhHHHHHHHHHHHcCChhHHH
Q 003937 368 IFDSLRDR--DVVAWTAMLVGYEQNGLNKDAV 397 (785)
Q Consensus 368 ~f~~~~~~--~~~~~~~li~~~~~~g~~~~A~ 397 (785)
.+-.+++. -......+|...+..|..+.-+
T Consensus 960 aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 960 ALMVLSTTPLKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp HHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHhCCChhhhh
Confidence 99877643 2456777888888888765543
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=74.78 E-value=10 Score=32.84 Aligned_cols=55 Identities=15% Similarity=0.048 Sum_probs=31.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhcc----cCCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 003937 453 LITMYSKAGNINAARRVFNLIH----WRQET-------VSWTSMIVALAQHGLGEEAIQLFERMLE 507 (785)
Q Consensus 453 li~~y~~~g~~~~A~~~~~~~~----~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 507 (785)
-++.+...|.++.|.-+.+.+. ..|++ .+...+.+++...|++.+|...|++.++
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3455666677777776655432 22332 1334455666777777777777777543
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=74.67 E-value=15 Score=31.80 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=10.3
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 003937 621 ALCNLYSSCGKWEDAANIRKS 641 (785)
Q Consensus 621 ~l~~~~~~~g~~~~a~~~~~~ 641 (785)
-+...|.+.|++++|..+++.
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHCCHHHHHHHHhc
Confidence 344445555555555554443
No 255
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.17 E-value=87 Score=32.51 Aligned_cols=95 Identities=9% Similarity=0.042 Sum_probs=68.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHhhccCCHHHHHHHHHHhhhc-CCCC--CC--ch
Q 003937 482 WTSMIVALAQHGLGEEAIQLFERMLEL--GIKPDH---ITYVGVLTACTHGGLVEQGQRYYNMMKNV-HKIK--PT--PS 551 (785)
Q Consensus 482 ~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~--p~--~~ 551 (785)
...|...|...|++.+|..++.++... |..+.. ..+...+..|...+++.+|..+..++... .... |+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677888999999999999998753 222221 25666677899999999999998887421 1122 22 34
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC
Q 003937 552 HFASMVDLLGRAGLLQEAYNFIENM 576 (785)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~~~~~~ 576 (785)
.+.+++..+...+++.+|.+.|.+.
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5778888888999999998877665
No 256
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=73.86 E-value=70 Score=32.50 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=11.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 003937 485 MIVALAQHGLGEEAIQLFERMLE 507 (785)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~ 507 (785)
++..|...|++.+|++++.++.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 34445555555555555555544
No 257
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.53 E-value=82 Score=32.71 Aligned_cols=56 Identities=7% Similarity=-0.000 Sum_probs=24.9
Q ss_pred HHHHhhccCCHHHHHHHHHHhhhc-CCCCCC---chhHHHHHHHHhhcCCHHHHHHHHHh
Q 003937 520 VLTACTHGGLVEQGQRYYNMMKNV-HKIKPT---PSHFASMVDLLGRAGLLQEAYNFIEN 575 (785)
Q Consensus 520 ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~ 575 (785)
|...+...|++.+|..++..+... ++..+. +..+..-+.+|...+++.+|..++.+
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~k 202 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRK 202 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334445555555555555544321 111111 23344444455555555555554444
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=72.84 E-value=33 Score=32.48 Aligned_cols=122 Identities=15% Similarity=0.089 Sum_probs=59.6
Q ss_pred HHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHH
Q 003937 489 LAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQ 567 (785)
Q Consensus 489 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 567 (785)
+.+.|..++|++....-++. .| |...-..++.-++-.|+|++|.+-++...+ +.|+...-..+...+.++....
T Consensus 7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~aE~~R 81 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQAR 81 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHHHHHH
Confidence 44566666666666666663 34 333444455566666777777666665543 2343222211111111111111
Q ss_pred HHHHHHHhC--C-CCCCHHHH-HHHHHHH--HhcCCHHHHHHHHHHHHhhCCCCch
Q 003937 568 EAYNFIENM--P-LEPDVVAW-GSLLSAC--RVHKNLDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 568 ~A~~~~~~~--~-~~p~~~~~-~~ll~~~--~~~g~~~~a~~~~~~~~~~~p~~~~ 617 (785)
.++|..- | +--.+..| ..|+.+. ...|+.+.|..+-+++++.-|..++
T Consensus 82 --~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 82 --KDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp --HHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred --HHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1223222 1 11112224 3444443 3457888888888888777775554
No 259
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=72.18 E-value=39 Score=28.40 Aligned_cols=33 Identities=18% Similarity=0.152 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 003937 585 WGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 585 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 617 (785)
.--|.-++.+.|+++.|.+..+.+++.+|+|..
T Consensus 80 LYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 80 LYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 345666789999999999999999999997653
No 260
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.09 E-value=36 Score=32.34 Aligned_cols=24 Identities=8% Similarity=0.163 Sum_probs=15.3
Q ss_pred HHHHHHHhcCChHHHHHHhhhcCC
Q 003937 216 VVVSLHIHSGRLDLARAQFDQMIE 239 (785)
Q Consensus 216 ~li~~~~~~g~~~~A~~l~~~~~~ 239 (785)
+.+...++.|+++....+++.-..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~ 30 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGAN 30 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCC
Confidence 455566667777777777765433
No 261
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=71.95 E-value=30 Score=26.88 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=39.3
Q ss_pred HHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHH
Q 003937 456 MYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHITYV 518 (785)
Q Consensus 456 ~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 518 (785)
.+...|++++|..+.+... -||.+.|-+|-. .+.|..+++..-+.++-.+| .|....|.
T Consensus 48 SLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGNP-WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHTTCHHHHHGGGTTCC-CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCCC-CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 3456788888887777766 458888877654 45677777777776776665 45444443
No 262
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.89 E-value=13 Score=30.84 Aligned_cols=71 Identities=14% Similarity=0.246 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhC
Q 003937 497 EAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENM 576 (785)
Q Consensus 497 ~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~ 576 (785)
+..+-++.+....+-|++......|.+|-+.+++.-|.++|+-++. ...+...+|..+++ |-.-.++++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~--K~~~~~~iY~y~lq---------ElkPtl~EL 139 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD--KAGPHKEIYPYVIQ---------ELRPTLNEL 139 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTTCTTHHHHHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hcCCchhhHHHHHH---------HHhhHHHHh
Confidence 4555666777778899999999999999999999999999998875 44555667877765 445555665
Q ss_pred CC
Q 003937 577 PL 578 (785)
Q Consensus 577 ~~ 578 (785)
++
T Consensus 140 GI 141 (152)
T 2y69_E 140 GI 141 (152)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 263
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=71.21 E-value=13 Score=37.93 Aligned_cols=67 Identities=18% Similarity=0.133 Sum_probs=34.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHhhccCCHHHHHHHHHHhhh----cCCCCCCchhH
Q 003937 485 MIVALAQHGLGEEAIQLFERMLELGIKP-DHITYVGVLTACTHGGLVEQGQRYYNMMKN----VHKIKPTPSHF 553 (785)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 553 (785)
++..+...|++++|+..+..+... .| +...+..++.++...|+..+|.+.|+...+ ..|+.|...+-
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 344445555555555555555442 23 344555555555555555555555554332 24666765543
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=69.60 E-value=21 Score=29.58 Aligned_cols=35 Identities=17% Similarity=0.130 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch
Q 003937 583 VAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG 617 (785)
Q Consensus 583 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 617 (785)
..+--|.-|+.+.|+++.|.+..+.+++.+|+|..
T Consensus 79 d~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 79 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 34455666788888888888888888888887653
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.56 E-value=73 Score=37.93 Aligned_cols=147 Identities=10% Similarity=-0.012 Sum_probs=78.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhc
Q 003937 484 SMIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRA 563 (785)
Q Consensus 484 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 563 (785)
.++..+...+.++-|.++..- ++-+...--.+..++...|++++|.++|.+... |+.++....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~---------- 879 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQF---------- 879 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSC----------
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhh----------
Confidence 355566666776666554322 233333323345567777888888888876642 443332111
Q ss_pred CCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCch-----hHHHHHHHHHhcCChHHHHH
Q 003937 564 GLLQEAYNFIENMPLE-PDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSG-----AYSALCNLYSSCGKWEDAAN 637 (785)
Q Consensus 564 g~~~~A~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~~g~~~~a~~ 637 (785)
....+...+...-+.. .-..-|.-++..+.++|.++.+.+..+.+++..+.+.. .|..+.+.+.+.|++++|..
T Consensus 880 ~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 880 AVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp SSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred hhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 1111111122211111 12233555666677777777777777777764432221 45566677777777777777
Q ss_pred HHHHHHhCCC
Q 003937 638 IRKSMKYVGV 647 (785)
Q Consensus 638 ~~~~m~~~g~ 647 (785)
.+-.+.+...
T Consensus 960 aL~~~pd~~~ 969 (1139)
T 4fhn_B 960 ALMVLSTTPL 969 (1139)
T ss_dssp HHHHHHHSSS
T ss_pred HHHhCCCHHH
Confidence 7766654433
No 266
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=69.00 E-value=63 Score=28.77 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=37.7
Q ss_pred CCChhhHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCChhhHHHHHHHH
Q 003937 76 VKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPTQFTVTSVLASC 155 (785)
Q Consensus 76 ~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~ll~~~ 155 (785)
.++...-...+..+.+.|..+....+.+.+..+|...-...+.++.+.|..+ +...+..+.. .++...-...+.++
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 3444444445555555555444444455555555544444455555555432 2333333332 24444444444455
Q ss_pred hccCCh
Q 003937 156 TALGDL 161 (785)
Q Consensus 156 ~~~g~~ 161 (785)
...++.
T Consensus 101 ~~~~~~ 106 (201)
T 3ltj_A 101 GQIGDE 106 (201)
T ss_dssp HHHCCG
T ss_pred HHhCcH
Confidence 444443
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=68.16 E-value=96 Score=30.53 Aligned_cols=127 Identities=13% Similarity=0.063 Sum_probs=75.6
Q ss_pred HHHHhcCCh---hHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhHHHHH
Q 003937 56 NFYAKTESI---SYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKNAIRM 132 (785)
Q Consensus 56 ~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~a~~~ 132 (785)
..-...|++ =+|.+. |.++..-|.+.+++++|.+++.. -...+.+.|+...|-++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~-----------~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQE-----------TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHH-----------HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHH
Confidence 334456776 566554 45566777778888888777522 23344556666665554
Q ss_pred H----HHhHHCCCCCChhhHHHHHHHHhccCChh-HHHHHHH----HHHHhC--CCCChhHHHHHHHHHHhCCChHHHHH
Q 003937 133 F----VEMVQDQVLPTQFTVTSVLASCTALGDLS-AGKKVHS----FVVKTG--LSGCVNVTNSLLNMYAKVGDEMMAKA 201 (785)
Q Consensus 133 ~----~~m~~~g~~p~~~t~~~ll~~~~~~g~~~-~a~~~~~----~~~~~g--~~~~~~~~~~li~~~~~~g~~~~A~~ 201 (785)
- +-..+.++++|..+...++..+.....-+ .=..+.. +-.+.| -..|+.....+...|.+.+++.+|+.
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 4 44445677888877777777776554321 1122222 333333 23466677777777777777777777
Q ss_pred HHh
Q 003937 202 VFD 204 (785)
Q Consensus 202 ~~~ 204 (785)
-|-
T Consensus 158 H~i 160 (336)
T 3lpz_A 158 HLV 160 (336)
T ss_dssp HHT
T ss_pred HHH
Confidence 663
No 268
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=66.45 E-value=74 Score=28.59 Aligned_cols=19 Identities=26% Similarity=0.176 Sum_probs=8.5
Q ss_pred CChhHHHHHHHHHHhCCCh
Q 003937 178 GCVNVTNSLLNMYAKVGDE 196 (785)
Q Consensus 178 ~~~~~~~~li~~~~~~g~~ 196 (785)
++..+....+.++.+.|+.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~ 111 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDE 111 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG
T ss_pred CCHHHHHHHHHHHHHhCcH
Confidence 3444444444444444443
No 269
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=64.07 E-value=1.1e+02 Score=29.79 Aligned_cols=167 Identities=12% Similarity=0.033 Sum_probs=96.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHhh
Q 003937 450 SNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQ----LFERMLELGIKPDHITYVGVLTACT 525 (785)
Q Consensus 450 ~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~p~~~t~~~ll~a~~ 525 (785)
|.++..-|.+.+++++|.+++..-. ..+.++|+...|-+ +.+-..+.++++|......++..+.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGA------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 3566777888888888888765432 12445566555444 3455556677787777666666554
Q ss_pred ccCCHH-HHHHHHHHhhh---cCC--CCCCchhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C
Q 003937 526 HGGLVE-QGQRYYNMMKN---VHK--IKPTPSHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVH---K 596 (785)
Q Consensus 526 ~~g~~~-~a~~~~~~m~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~---g 596 (785)
....-+ .=.++.+.+.+ +.| -.-++.....+...|.+.|++.+|+.-|-- +-+-|...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCC
Confidence 422111 11122222211 111 223567778888999999999999987752 2111455666666655544 4
Q ss_pred CHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHH
Q 003937 597 NLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMK 643 (785)
Q Consensus 597 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 643 (785)
...++-...-+ .+--|...|+...|..+++...
T Consensus 183 ~~~e~dlf~~R--------------aVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 183 EDSTVAEFFSR--------------LVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp CHHHHHHHHHH--------------HHHHHHHTTBHHHHHHHHHHHH
T ss_pred CcchHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHHH
Confidence 43332221111 1223667889999999888764
No 270
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=62.95 E-value=15 Score=34.76 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=38.8
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC
Q 003937 559 LLGRAGLLQEAYNFIENM-PLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPD 614 (785)
Q Consensus 559 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~ 614 (785)
.+.+.|.+++|++....- .-+| |...-..|+.-++..|++++|..-++...+++|+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 455777888777655444 3455 4555566777778888888888888888888774
No 271
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=62.37 E-value=90 Score=34.20 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=20.0
Q ss_pred CchhHHHHHHH-----HHhcCChHHHHHHHHHH
Q 003937 615 NSGAYSALCNL-----YSSCGKWEDAANIRKSM 642 (785)
Q Consensus 615 ~~~~~~~l~~~-----~~~~g~~~~a~~~~~~m 642 (785)
+..++..|.++ +.+.|+|++|.+.++++
T Consensus 532 ~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 532 NKEICMLLLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 44456655554 48899999999887765
No 272
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=62.33 E-value=38 Score=28.11 Aligned_cols=60 Identities=12% Similarity=0.252 Sum_probs=42.2
Q ss_pred HHHHHHHHhHHCCCCCChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHH
Q 003937 128 NAIRMFVEMVQDQVLPTQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLN 188 (785)
Q Consensus 128 ~a~~~~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 188 (785)
+..+-+..+....+.|++....+.|++|.+.+|+..|.++++-+...- .+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 344555566666788888888888888888888888888888776543 233445665543
No 273
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=61.71 E-value=1.1e+02 Score=28.81 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=28.5
Q ss_pred HHHHHHHHccCChhHHHHHHhhCCCCCcc---HHHHHHHHHHhCCChhHHHHHHHHhHHCCCCCC
Q 003937 83 NTILSAYAKQGRLDLACEVFNLMPNRDSV---SWTTIIVTYNEIGRFKNAIRMFVEMVQDQVLPT 144 (785)
Q Consensus 83 ~~li~~~~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 144 (785)
++.+...++.|+++....+++.-...+.. .-.+.+...++.|+.+ +++.+.+.|..|+
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~ 66 (285)
T 1wdy_A 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPV 66 (285)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTT
T ss_pred chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCc
Confidence 34555566777777777777654433211 1112333334455543 3444445555443
No 274
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=58.43 E-value=96 Score=30.21 Aligned_cols=60 Identities=22% Similarity=0.190 Sum_probs=44.0
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 573 IENMPLEPD--VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 573 ~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
|...+++|. ..+..+-+..+.+++|+..|..+.++++++.|... ..++|.+++..-.+.+
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~ 257 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMA 257 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCC
Confidence 444466664 44667777778999999999999999999998422 3566778877776543
No 275
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=57.94 E-value=65 Score=25.10 Aligned_cols=52 Identities=12% Similarity=0.013 Sum_probs=26.1
Q ss_pred ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcch
Q 003937 160 DLSAGKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSS 213 (785)
Q Consensus 160 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~ 213 (785)
.-++|..|-+.+...|- ...+--.-+..+...|++++|..+.+.+.-||..+
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlep 73 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEP 73 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHH
Confidence 44556555555555542 22222222333455666666666666666333333
No 276
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=56.80 E-value=1.6e+02 Score=30.03 Aligned_cols=13 Identities=23% Similarity=0.409 Sum_probs=6.0
Q ss_pred HHHHHHHhCCCCc
Q 003937 434 IHASALRSGEASS 446 (785)
Q Consensus 434 ~~~~~~~~g~~~~ 446 (785)
+.+.+.+.|..++
T Consensus 359 iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 359 IVTLLLKNGASPN 371 (437)
T ss_dssp HHHHHHHTTCCSC
T ss_pred HHHHHHHCcCCCC
Confidence 3334445555544
No 277
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=55.54 E-value=1.6e+02 Score=28.75 Aligned_cols=167 Identities=8% Similarity=0.081 Sum_probs=92.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHHcCChhHHHHH----HHHHHHcCCCCCHhhHHHHHHHHhc
Q 003937 349 FTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQNGLNKDAVEL----FRSMVREGPKPNNYTLSAMLSVSSS 424 (785)
Q Consensus 349 ~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~a~~~ 424 (785)
|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.+++++..+...++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44566666777778887777543 22345556666555544 3444556778887777777766654
Q ss_pred cCchH-HHHHHHHHHH----HhCC--CCchHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHc---CC
Q 003937 425 LASLD-HGKQIHASAL----RSGE--ASSLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQH---GL 494 (785)
Q Consensus 425 ~~~~~-~a~~~~~~~~----~~g~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~---g~ 494 (785)
...-+ .-..+...++ +.|- .-++.....+...|.+.|++.+|+..|-.-... |...+..|+.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~-s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHD-SMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHH-HHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCc-cHHHHHHHHHHHHHhcCCCC
Confidence 33211 1223333333 2322 236677788888888888888888877633222 345555555444433 33
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhh
Q 003937 495 GEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKN 542 (785)
Q Consensus 495 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 542 (785)
..++-- ..-..++ -|.-.|++..|..+++...+
T Consensus 184 ~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHH
Confidence 332211 1111222 23456778888888776553
No 278
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=51.78 E-value=3.2e+02 Score=31.29 Aligned_cols=252 Identities=12% Similarity=0.050 Sum_probs=130.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC----CCH--hHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CC---CH-hhHHHHH-
Q 003937 353 LDGYIKIGDIGPARRIFDSLRD----RDV--VAWTAMLVGYEQNGLNKDAVELFRSMVREGP--KP---NN-YTLSAML- 419 (785)
Q Consensus 353 i~~~~~~g~~~~A~~~f~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~-~t~~~ll- 419 (785)
.-+....|+.+++..+++.... .+. ..-..+.-|....|..++++.++...+...- .- +. ....+.+
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 4456778899999999987664 222 2233344566777777788888877665321 00 01 1111111
Q ss_pred HHHhccCc-hHHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCHHHHHHHHHhcccCCChhHHHHH--HHHHHHcCCh
Q 003937 420 SVSSSLAS-LDHGKQIHASALRSGEAS-SLSVSNALITMYSKAGNINAARRVFNLIHWRQETVSWTSM--IVALAQHGLG 495 (785)
Q Consensus 420 ~a~~~~~~-~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~p~~~~~~~l--i~~~~~~g~~ 495 (785)
-+.+-.|. -+.+...+..++...-.. .....-+|.-.|.-.|+.+....++..+....+......+ .-|+..-|+.
T Consensus 461 LGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 461 IGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 12222332 234444444444422110 0112223444455678888777777765433232222223 3345577898
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHH---HHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHH
Q 003937 496 EEAIQLFERMLELGIKPDHI-TYV---GVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYN 571 (785)
Q Consensus 496 ~~A~~~~~~m~~~g~~p~~~-t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 571 (785)
+.+..+.+.+... .|.. -|. ++.-+|+..|+.....+++..+..+ ...++.-...+.-++.-.|+.+.+.+
T Consensus 541 e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 541 ELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp GGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence 8888888888773 3332 333 3345788889988888899888762 22233333333333334565555566
Q ss_pred HHHhCCCCCCHHHH--HHHHHHHHhcCCH-HHHHHHHHHHH
Q 003937 572 FIENMPLEPDVVAW--GSLLSACRVHKNL-DLGKIAAEKLL 609 (785)
Q Consensus 572 ~~~~~~~~p~~~~~--~~ll~~~~~~g~~-~~a~~~~~~~~ 609 (785)
+++.+.-..|..+- .++.-|....|+. ..+...++.+.
T Consensus 616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 66544212233222 2222233323332 45555666554
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.05 E-value=62 Score=33.47 Aligned_cols=55 Identities=9% Similarity=-0.042 Sum_probs=24.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcccC-----CChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 003937 451 NALITMYSKAGNINAARRVFNLIHWR-----QETVSWTSMIVALAQHGLGEEAIQLFERM 505 (785)
Q Consensus 451 ~~li~~y~~~g~~~~A~~~~~~~~~~-----p~~~~~~~li~~~~~~g~~~~A~~~~~~m 505 (785)
..+.+.|.++|+++.|.+.|.++... --+..|-.+|..+...+++..+...+.+.
T Consensus 135 ~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 135 INLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp HHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34445555555555555555444311 01223333444444444444444444443
No 280
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=47.95 E-value=1.5e+02 Score=26.51 Aligned_cols=65 Identities=11% Similarity=0.086 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 003937 584 AWGSLLSACRVHKNLDLGKIAAEKLLL--IEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKK 649 (785)
Q Consensus 584 ~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 649 (785)
.|-..+..| ..++...+..+|..+.. +.-.-+..|...+..+...|++++|..+++.=.+++-+|
T Consensus 82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 454444443 24446678888888876 445566788899999999999999999999887776654
No 281
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.46 E-value=82 Score=32.51 Aligned_cols=91 Identities=7% Similarity=-0.051 Sum_probs=54.6
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCCchh----HH
Q 003937 552 HFASMVDLLGRAGLLQEAYNFIENM-----PLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLLIE--PDNSGA----YS 620 (785)
Q Consensus 552 ~~~~li~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~----~~ 620 (785)
....+.+.|.+.|++++|.+.+.++ ...--...+-.++..+...+++..+....+++..+. ..++.. ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4556677777777777777777766 111224456666777777777777777777775531 112221 12
Q ss_pred HHHHHHHhcCChHHHHHHHHHH
Q 003937 621 ALCNLYSSCGKWEDAANIRKSM 642 (785)
Q Consensus 621 ~l~~~~~~~g~~~~a~~~~~~m 642 (785)
.-+-++...++|.+|.+.|-..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2233445667777777766654
No 282
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.62 E-value=80 Score=28.77 Aligned_cols=15 Identities=13% Similarity=0.193 Sum_probs=8.2
Q ss_pred HccCChhHHHHHHhh
Q 003937 90 AKQGRLDLACEVFNL 104 (785)
Q Consensus 90 ~~~g~~~~A~~~f~~ 104 (785)
++.|+++....+++.
T Consensus 17 ~~~g~~~~~~~Ll~~ 31 (240)
T 3eu9_A 17 TQYGIYERCRELVEA 31 (240)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHcCChHHHHHHHHc
Confidence 445555555555554
No 283
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=45.56 E-value=7.1 Score=24.18 Aligned_cols=17 Identities=29% Similarity=0.657 Sum_probs=11.8
Q ss_pred CCccccc-CCCccCCCCC
Q 003937 768 ATRFHHF-KKGLCSCRDY 784 (785)
Q Consensus 768 ~~~~h~~-~~g~csc~~~ 784 (785)
|=.=|.. .+|.||||-|
T Consensus 12 CPkPHRL~~~~~C~CG~y 29 (42)
T 2l0z_A 12 CPLPHRLNSLGGCRCGKY 29 (42)
T ss_dssp CCTTSCCCTTSSBTTTTB
T ss_pred CCCCceecCCceeccccc
Confidence 3344555 5899999976
No 284
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=42.17 E-value=1.3e+02 Score=28.58 Aligned_cols=49 Identities=8% Similarity=0.023 Sum_probs=20.9
Q ss_pred HHHHHhcCChhHHHHHhhcCCCCChhhHHHHHHHHHccCChhHHHHHHh
Q 003937 55 MNFYAKTESISYAKKVFDEMPVKTLCSWNTILSAYAKQGRLDLACEVFN 103 (785)
Q Consensus 55 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~ 103 (785)
+...+..|+++-++.+++.-...+...-.+.+...+..|+.+-+..+++
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKILLF 83 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 3344455666655555554322111111223333344455554444444
No 285
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=41.63 E-value=3e+02 Score=27.96 Aligned_cols=78 Identities=12% Similarity=0.046 Sum_probs=38.3
Q ss_pred hhcCCCcchHHHHHHHHHHcCCCCchh--HHHHHHHHHHhcCChhHHHHHhhcCCCC---ChhhHHHHHHHHHccCChhH
Q 003937 23 NLKSRNPFVGKLVHARIIKCGLHLSVF--LKNSLMNFYAKTESISYAKKVFDEMPVK---TLCSWNTILSAYAKQGRLDL 97 (785)
Q Consensus 23 ~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~ 97 (785)
.+..|+.+.. +.+++.|..++.. ...+.+...+..|+.+-++.+++.-... +..- .+.+...++.|+.+-
T Consensus 21 Aa~~g~~~~v----~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A~~~g~~~~ 95 (437)
T 1n11_A 21 ASFMGHLPIV----KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-QTPLHCAARIGHTNM 95 (437)
T ss_dssp HHHHTCHHHH----HHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS-CCHHHHHHHHTCHHH
T ss_pred HHHCCCHHHH----HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHHCCCHHH
Confidence 3344554433 3344455444322 1223455555677777777766654322 1111 123344456666666
Q ss_pred HHHHHhhC
Q 003937 98 ACEVFNLM 105 (785)
Q Consensus 98 A~~~f~~m 105 (785)
+.-+++.-
T Consensus 96 v~~Ll~~g 103 (437)
T 1n11_A 96 VKLLLENN 103 (437)
T ss_dssp HHHHHHHT
T ss_pred HHHHHhCC
Confidence 66666553
No 286
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=40.62 E-value=31 Score=23.84 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=25.6
Q ss_pred chHHHHHHHHhhhcCCCCCChhhHHHHHHHH-hcc
Q 003937 258 DFEALGMFANMLKDSSLKPDKFTLASTLSAC-ANL 291 (785)
Q Consensus 258 ~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~-~~~ 291 (785)
.++|.+.|.+||+..++.|+ .||..++..+ ++.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~-wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDST-WSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSS-CCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCC-CcHHHHHHHhccCC
Confidence 47899999999888888776 6787777777 443
No 287
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=40.33 E-value=1.2e+02 Score=27.71 Aligned_cols=87 Identities=9% Similarity=0.009 Sum_probs=46.7
Q ss_pred HHHhhcCCCcchHHHHHHHHHHcCCCCchh--HHHHHHHHHHhcCChhHHHHHhhcCCCCChh--hHHHHHHHHHccCCh
Q 003937 20 LQSNLKSRNPFVGKLVHARIIKCGLHLSVF--LKNSLMNFYAKTESISYAKKVFDEMPVKTLC--SWNTILSAYAKQGRL 95 (785)
Q Consensus 20 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~li~~~~~~g~~ 95 (785)
|...+..|+.+....+.+.+.+.|..++.. ...+.+...+..|+.+-++.+++.-..++.. .-.+.+...++.|+.
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 92 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSP 92 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence 334445677777777777666666544332 1223455555677777776666654332211 111233344556666
Q ss_pred hHHHHHHhhCC
Q 003937 96 DLACEVFNLMP 106 (785)
Q Consensus 96 ~~A~~~f~~m~ 106 (785)
+-+..+++...
T Consensus 93 ~~~~~Ll~~~~ 103 (241)
T 1k1a_A 93 TCLRALLDSAA 103 (241)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHcCC
Confidence 66666666543
No 288
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=37.67 E-value=1e+02 Score=28.09 Aligned_cols=13 Identities=15% Similarity=0.371 Sum_probs=6.5
Q ss_pred HHHHHHHCCCCCC
Q 003937 501 LFERMLELGIKPD 513 (785)
Q Consensus 501 ~~~~m~~~g~~p~ 513 (785)
+++.+.+.|..|+
T Consensus 198 ~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 198 LVRTLVRSGADSS 210 (241)
T ss_dssp HHHHHHHTTCCTT
T ss_pred HHHHHHhcCCCCC
Confidence 3444445565554
No 289
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=34.87 E-value=81 Score=26.01 Aligned_cols=57 Identities=21% Similarity=0.321 Sum_probs=25.4
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCC
Q 003937 355 GYIKIGDIGPARRIFDSLRDRD---VVAWTAMLVGYEQNGL--NKDAVELFRSMVREGPKPN 411 (785)
Q Consensus 355 ~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 411 (785)
-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+.
T Consensus 16 EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 16 EYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 3333335555555555554431 1223333333333321 2345566666665554443
No 290
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=34.69 E-value=3.7e+02 Score=27.10 Aligned_cols=288 Identities=12% Similarity=0.089 Sum_probs=146.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHhCCCCC------chHhHHHHHHHHHhc-CCHHHHHHHHHhcCC---CCHhHH---
Q 003937 314 PVGNALISCYAKVGGVEIAQKIVEQSGISYL------NVIAFTTLLDGYIKI-GDIGPARRIFDSLRD---RDVVAW--- 380 (785)
Q Consensus 314 ~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~------~~~~~~~li~~~~~~-g~~~~A~~~f~~~~~---~~~~~~--- 380 (785)
.....|...|.+.|+.++..+++.....--. ....-..+++.+... +..+.-..+..+..+ .+-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888899988888888877543211 233345556655543 223333333333221 111223
Q ss_pred ---HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003937 381 ---TAMLVGYEQNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLASLDHGKQIHASALRSGEASSLSVSNALITMY 457 (785)
Q Consensus 381 ---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 457 (785)
.-++..|...|++.+|++++.++.+.--+.|..++ + ..++-.-+.+|
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~--l----------------------------lev~lle~~~~ 149 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNL--L----------------------------VEVQLLESKTY 149 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHH--H----------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchh--H----------------------------HHHHHHHHHHH
Confidence 13566677777777777777776654222221111 1 12233445566
Q ss_pred HhcCCHHHHHHHHHhcccC-----CChhHHHH--HH--HHHH-HcCChHHHHHHHHHHHHC---CCCCC---HHHHHHHH
Q 003937 458 SKAGNINAARRVFNLIHWR-----QETVSWTS--MI--VALA-QHGLGEEAIQLFERMLEL---GIKPD---HITYVGVL 521 (785)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~~-----p~~~~~~~--li--~~~~-~~g~~~~A~~~~~~m~~~---g~~p~---~~t~~~ll 521 (785)
...|++.++...+.....- +++..-.. .. -.+. ..+++.+|...|-+..+. -..|. ...|..+.
T Consensus 150 ~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~ 229 (394)
T 3txn_A 150 HALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC 229 (394)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 6666766666666544211 12221111 11 1244 567777777777665421 01121 12333332
Q ss_pred HHhhccCCHHHHHHHHH-HhhhcCCCCCCchhHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHH---HHHHHHHHHhc
Q 003937 522 TACTHGGLVEQGQRYYN-MMKNVHKIKPTPSHFASMVDLLGRAGLLQEAYNFIENMP--LEPDVVA---WGSLLSACRVH 595 (785)
Q Consensus 522 ~a~~~~g~~~~a~~~~~-~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~---~~~ll~~~~~~ 595 (785)
. ... ++..+-..++. .....+ ..|....+..++.+| +.+++.+..++++... +..|... |..|....+.
T Consensus 230 a-Ll~-~~r~el~~~l~~~~~~~~-~~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~- 304 (394)
T 3txn_A 230 K-IML-GQSDDVNQLVSGKLAITY-SGRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLE- 304 (394)
T ss_dssp H-HHT-TCGGGHHHHHHSHHHHTT-CSHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHH-
T ss_pred H-HHc-CCHHHHHHHhcccccccc-CCccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-
Confidence 2 222 22222222222 111112 346666666677665 5678877777777662 4445542 2222221111
Q ss_pred CCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 003937 596 KNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGV 647 (785)
Q Consensus 596 g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~ 647 (785)
..+.++ ..|-...++..++..+.- ..+++...+.+|...|.
T Consensus 305 -------~~L~~i--~~pYsrIsl~~iA~~l~l--s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 305 -------QNLCRI--IEPYSRVQVAHVAESIQL--PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp -------HHHHHH--HTTCSEEEHHHHHHHHTC--CHHHHHHHHHHHHHTTS
T ss_pred -------HHHHHH--hHhhceeeHHHHHHHHCc--CHHHHHHHHHHHHHCCC
Confidence 111111 467777888888887754 68899999999987765
No 291
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=33.97 E-value=13 Score=23.22 Aligned_cols=10 Identities=40% Similarity=1.062 Sum_probs=8.7
Q ss_pred ccccccchhH
Q 003937 741 NLRVCNDCHS 750 (785)
Q Consensus 741 nl~~c~dch~ 750 (785)
+-|+|.+||.
T Consensus 16 ~YRvC~~Cgk 25 (44)
T 2lo3_A 16 QYRVCEKCGK 25 (44)
T ss_dssp CEEECTTTCC
T ss_pred cchhhcccCC
Confidence 7899999984
No 292
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=33.81 E-value=1.4e+02 Score=24.58 Aligned_cols=70 Identities=13% Similarity=0.242 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcCC--HHHHHHHHHhcCCCCHhHHHHHHHH
Q 003937 317 NALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIGD--IGPARRIFDSLRDRDVVAWTAMLVG 386 (785)
Q Consensus 317 ~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~--~~~A~~~f~~~~~~~~~~~~~li~~ 386 (785)
+.++.-|...|+.++|.+.++++..... .......+..++-+.++ .+....++..+...+..+-+.+..|
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~G 83 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 83 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 5667777777777777777777654322 22333444444444322 2344445544444444444444443
No 293
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=33.69 E-value=2.6e+02 Score=25.05 Aligned_cols=16 Identities=25% Similarity=0.183 Sum_probs=7.1
Q ss_pred HHccCChhHHHHHHhh
Q 003937 89 YAKQGRLDLACEVFNL 104 (785)
Q Consensus 89 ~~~~g~~~~A~~~f~~ 104 (785)
.++.|+++-+..+++.
T Consensus 49 A~~~~~~~~v~~Ll~~ 64 (240)
T 3eu9_A 49 AAINNRIDLVKYYISK 64 (240)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHc
Confidence 3444444444444443
No 294
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=33.46 E-value=3.1e+02 Score=28.93 Aligned_cols=68 Identities=12% Similarity=-0.058 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHH----HHH-HHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 579 EPDVVAWGSLLSACRVHKNLDLGKIA----AEK-LLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 579 ~p~~~~~~~ll~~~~~~g~~~~a~~~----~~~-~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
.+|......|-..+..+|..++-.++ .+. +.+..|++......|-.-|.+.|++-+|.+++..+...+
T Consensus 175 s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 175 YNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 45666666777777777755432221 111 112345555566777777899999999999999997664
No 295
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.09 E-value=43 Score=26.02 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=15.3
Q ss_pred hHHHHHHhhhcCCCCcccHHHHHHHHhhCCCc
Q 003937 227 LDLARAQFDQMIERDVVTWNSMIAGYSQNGYD 258 (785)
Q Consensus 227 ~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~ 258 (785)
.+.|.++++.++.+...+|..++.++...|+.
T Consensus 53 ~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~ 84 (97)
T 3ygs_P 53 RDQARQLIIDLETRGSQALPLFISCLEDTGQD 84 (97)
T ss_dssp HHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHHHHcCcH
Confidence 33444444444455555555555555444443
No 296
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.06 E-value=2.7e+02 Score=24.91 Aligned_cols=47 Identities=9% Similarity=0.130 Sum_probs=34.5
Q ss_pred HHHHHHHHH---HcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCc
Q 003937 380 WTAMLVGYE---QNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLAS 427 (785)
Q Consensus 380 ~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 427 (785)
.-.+|+++. +..+++.|+-.+-+|++.| .|....-..++.+....|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 334566664 4688999999999999999 7777766666666655553
No 297
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=32.07 E-value=14 Score=26.18 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=18.2
Q ss_pred eeEEEecCCcccccCCCccCCC
Q 003937 761 REIVVRDATRFHHFKKGLCSCR 782 (785)
Q Consensus 761 ~~~~~~~~~~~h~~~~g~csc~ 782 (785)
..|-+.|....|+|+||+-+-+
T Consensus 8 k~v~LkDGstvyiFKDGKMamE 29 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMGME 29 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEEEE
T ss_pred eeEecCCCcEEEEEcCCceehh
Confidence 4677899999999999986544
No 298
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=31.97 E-value=3.9e+02 Score=26.51 Aligned_cols=197 Identities=11% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCChHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChHHHHHHhhhcCCCCcccHHHHHHHHhhCCCchH
Q 003937 184 NSLLNMYAKVGDEMMAKAVFDGMRLK---NVSSWNVVVSLHIHSGRLDLARAQFDQMIERDVVTWNSMIAGYSQNGYDFE 260 (785)
Q Consensus 184 ~~li~~~~~~g~~~~A~~~~~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~~~~~~~~~~~~li~~~~~~g~~~~ 260 (785)
..+|.-|...|+.++|...++++..+ ....-..+..++-+...-.+....+=.....+..+-..+..||.. -.+.
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~--lle~ 135 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTNDVEKSFDK--LLKD 135 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTTTSCCHHHHHHHHHH--HHHT
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHh
Q ss_pred HHHHHHHhhhcCCCCCChhhHHHHHHHHhccc---------------chhhHHHHHHHHHHh------------------
Q 003937 261 ALGMFANMLKDSSLKPDKFTLASTLSACANLE---------------KLKLGKQIHAYIIRT------------------ 307 (785)
Q Consensus 261 A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~---------------~~~~a~~~~~~~~~~------------------ 307 (785)
+-++--.. |+...+...+-+.+-.. .-+.+.++.......
T Consensus 136 ldDl~lDi-------P~a~~~la~flaRaV~d~~l~~~~l~~~~~~~~~~~~~~~l~~a~~~L~~~~~~~~~~~~WG~g~ 208 (358)
T 3eiq_C 136 LPELALDT-------PRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGG 208 (358)
T ss_dssp HHHHHHHC-------TTHHHHHHHHHHHHHHTTCSCSSTTGGGC---CCHHHHHHHHHHHHHHTC---------CCCCCC
T ss_pred hhhhcccc-------ccHHHHHHHHHHHHHHhCCCCHHHHHHHhhcccchHHHHHHHHHHHHHhccchHHHHHHhcCCCC
Q ss_pred cCCCCcch---HHHHHHHHHhcCChHHHHHHHHHhCCCCC-chHhHHHHHHHHHhcC--CHHHHHHHHHhcCCCCHhHHH
Q 003937 308 EFDATGPV---GNALISCYAKVGGVEIAQKIVEQSGISYL-NVIAFTTLLDGYIKIG--DIGPARRIFDSLRDRDVVAWT 381 (785)
Q Consensus 308 g~~~~~~~---~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g--~~~~A~~~f~~~~~~~~~~~~ 381 (785)
|..|...+ .+.++.-|...|+.++|.+.++++..... .......+..++-+.+ ..+...+++..+...+..+-+
T Consensus 209 ~~~~veelkkki~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 209 GQQPVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred CCccHHHHHHHHHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Q ss_pred HHHHHHHH
Q 003937 382 AMLVGYEQ 389 (785)
Q Consensus 382 ~li~~~~~ 389 (785)
.+..|+.+
T Consensus 289 q~~~Gf~~ 296 (358)
T 3eiq_C 289 QMKRGYER 296 (358)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
No 299
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=31.93 E-value=1.4e+02 Score=29.06 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=44.1
Q ss_pred HHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 003937 572 FIENMPLEPD--VVAWGSLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVG 646 (785)
Q Consensus 572 ~~~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g 646 (785)
+|...+++|. ..+..+-+..+.+++|+..|..+.++++++.|+ +. ..++|.+++..-.+.+
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~-~~-------------~~~qArkil~~ce~~~ 248 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK-PE-------------VAQQTRKILSACEKNP 248 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC-HH-------------HHHHHHHHHHHHHHSC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-HH-------------HHHHHHHHHHHHhcCC
Confidence 3444456664 346677777789999999999999999999883 21 3466788877776554
No 300
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=31.90 E-value=5.4e+02 Score=28.10 Aligned_cols=81 Identities=11% Similarity=0.057 Sum_probs=41.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHhCCCCCchHhHHHHHHHHHhcCCHHHHHHHHHhcCCCCHhHHHHHHHHHHH---cCChh
Q 003937 318 ALISCYAKVGGVEIAQKIVEQSGISYLNVIAFTTLLDGYIKIGDIGPARRIFDSLRDRDVVAWTAMLVGYEQ---NGLNK 394 (785)
Q Consensus 318 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~---~g~~~ 394 (785)
....++.-+|++|.|.+.+-+. ...+.+-+...+..| |-+.....++..-......-+..||..|.+ ..++.
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~--~~vdAVH~AIaL~~~---gLL~~~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~ 373 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF--SEMDAVHLAIGLASL---KLFKIDSSTRLTKKPKRDIRFANILANYTKSFRYSDPR 373 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT--CHHHHHHHHHHHHHT---TC-----------------CHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHhhHHHHHHHHHhc--CchhHHHHHHHHHHc---CCccCCCcccccCCCcccccHHHHHHHHHHHhhcCCHH
Confidence 3556677789999999988765 222333333333332 222211111111001112336678888765 57888
Q ss_pred HHHHHHHHH
Q 003937 395 DAVELFRSM 403 (785)
Q Consensus 395 ~A~~~~~~m 403 (785)
+|++.|--+
T Consensus 374 ~Al~Y~~li 382 (661)
T 2qx5_A 374 VAVEYLVLI 382 (661)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHHHH
Confidence 888887766
No 301
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=31.88 E-value=3.2e+02 Score=25.51 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=9.6
Q ss_pred CCChhHHHHHHHHHHhCCC
Q 003937 177 SGCVNVTNSLLNMYAKVGD 195 (785)
Q Consensus 177 ~~~~~~~~~li~~~~~~g~ 195 (785)
.++..+-...+.+..+.|+
T Consensus 139 d~~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 139 DKSTNVRRATAFAISVIND 157 (280)
T ss_dssp CSCHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHhcCC
Confidence 4555555555555555554
No 302
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=31.77 E-value=2e+02 Score=25.07 Aligned_cols=15 Identities=7% Similarity=0.412 Sum_probs=7.3
Q ss_pred HHHHHHHHHcCCCCC
Q 003937 397 VELFRSMVREGPKPN 411 (785)
Q Consensus 397 ~~~~~~m~~~g~~p~ 411 (785)
.++.+.+.+.|..|+
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 444445555555444
No 303
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=31.23 E-value=1.1e+02 Score=26.11 Aligned_cols=52 Identities=6% Similarity=0.050 Sum_probs=25.4
Q ss_pred HHHHHhhcCCCcchHHHHHHHHHHcCCCCchh--HHHHHHHHHHhcCChhHHHHHhhc
Q 003937 18 HLLQSNLKSRNPFVGKLVHARIIKCGLHLSVF--LKNSLMNFYAKTESISYAKKVFDE 73 (785)
Q Consensus 18 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~ 73 (785)
..+...+..|+.+.... +++.|..++.. ...+.+...+..|+.+-++.+++.
T Consensus 16 ~~l~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 69 (169)
T 2y1l_E 16 KKLLEAARAGRDDEVRI----LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN 69 (169)
T ss_dssp HHHHHHHHHTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred chHHHHHHcCCHHHHHH----HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 33444445577655544 44455443321 122334444566666665555554
No 304
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=31.05 E-value=1.7e+02 Score=29.02 Aligned_cols=23 Identities=17% Similarity=0.169 Sum_probs=10.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCC
Q 003937 388 EQNGLNKDAVELFRSMVREGPKP 410 (785)
Q Consensus 388 ~~~g~~~~A~~~~~~m~~~g~~p 410 (785)
+..|+.+-+..+++.-...|..|
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~~ 114 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQMP 114 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHcCCHHHHHHHHHhccccCCCH
Confidence 34555554444444433334333
No 305
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.89 E-value=43 Score=26.04 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=22.0
Q ss_pred ChhHHHHHHhhCCCCCccHHHHHHHHHHhCCChhH
Q 003937 94 RLDLACEVFNLMPNRDSVSWTTIIVTYNEIGRFKN 128 (785)
Q Consensus 94 ~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~ 128 (785)
..+.|+++++.++.+...+|..++.++...|+..-
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~L 86 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDML 86 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHH
Confidence 45666666666666666666666666655554433
No 306
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=29.95 E-value=3e+02 Score=24.62 Aligned_cols=55 Identities=13% Similarity=0.146 Sum_probs=34.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCC
Q 003937 493 GLGEEAIQLFERMLELGIKPDHI-TYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKP 548 (785)
Q Consensus 493 g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p 548 (785)
+...++.++|..|...|+--... -|......+...|++.+|.++|+.-.+ .+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~-~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAE-NNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCcc
Confidence 33557777777777776655543 555566666667777777777766554 34444
No 307
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.92 E-value=1.4e+02 Score=29.08 Aligned_cols=62 Identities=23% Similarity=0.364 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCC
Q 003937 349 FTTLLDGYIKIGDIGPARRIFDSLRDRD---VVAWTAMLVGYEQNGL--NKDAVELFRSMVREGPKP 410 (785)
Q Consensus 349 ~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 410 (785)
...++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+....++..+...|+-+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 4556666666777777777777776552 2233333333333322 233455666666555443
No 308
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=29.80 E-value=1.8e+02 Score=28.29 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCChHHHHHHhhhcCCCC---cccHHHHHHHHhhCCC--chHHHHHHHHhhhcCCC
Q 003937 214 WNVVVSLHIHSGRLDLARAQFDQMIERD---VVTWNSMIAGYSQNGY--DFEALGMFANMLKDSSL 274 (785)
Q Consensus 214 ~~~li~~~~~~g~~~~A~~l~~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~ml~~~g~ 274 (785)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+....++..+ ...|+
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L-~~~~~ 233 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSL-WKSST 233 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHH-HHHCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHH-HHCCC
Confidence 4466777777778888888877776552 2233444444444322 23455666666 44343
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=27.95 E-value=72 Score=27.26 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=11.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHh
Q 003937 317 NALISCYAKVGGVEIAQKIVEQS 339 (785)
Q Consensus 317 ~~li~~y~~~g~~~~A~~~~~~~ 339 (785)
+.++.-|...|+.++|.+.++++
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL 35 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKEL 35 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh
Confidence 34555555556444444444444
No 310
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=27.86 E-value=1.4e+02 Score=27.74 Aligned_cols=53 Identities=8% Similarity=-0.060 Sum_probs=30.0
Q ss_pred HHHhCCChhHHHHHHHHhHHCCCCCChhh-------HHHHHHHHh--ccCChhHHHHHHHHH
Q 003937 119 TYNEIGRFKNAIRMFVEMVQDQVLPTQFT-------VTSVLASCT--ALGDLSAGKKVHSFV 171 (785)
Q Consensus 119 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~g~~~~a~~~~~~~ 171 (785)
..++.|+.+....+++.+.+.|..++... .+.|..++. +.|+.+-++.+++.-
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34456777777777776666665555332 234444432 456666666655544
No 311
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=27.73 E-value=1e+02 Score=28.76 Aligned_cols=86 Identities=8% Similarity=-0.000 Sum_probs=52.5
Q ss_pred HHhccCChhHHHHHHHHHHHhCCCCChhH-------HHHHHHHHH--hCCChHHHHHHHhcCCC--------------CC
Q 003937 154 SCTALGDLSAGKKVHSFVVKTGLSGCVNV-------TNSLLNMYA--KVGDEMMAKAVFDGMRL--------------KN 210 (785)
Q Consensus 154 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-------~~~li~~~~--~~g~~~~A~~~~~~m~~--------------~~ 210 (785)
..+..|+.+..+.+++.+.+.|...+... .+.|..+.. +.|+.+-+..+++.-.. .|
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 34467889988889998888886655332 233433322 56888877777764321 11
Q ss_pred cchHHHHHHHHHhcCChHHHHHHhhhcCCC
Q 003937 211 VSSWNVVVSLHIHSGRLDLARAQFDQMIER 240 (785)
Q Consensus 211 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~~ 240 (785)
..-+ +.+...+..|+.+-+.-+++.-...
T Consensus 91 ~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~~ 119 (260)
T 3jxi_A 91 YRGQ-TALHIAIERRCKHYVELLVEKGADV 119 (260)
T ss_dssp EESB-CHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred cCCC-CHHHHHHHcCCHHHHHHHHhCCCCc
Confidence 1222 3444556678888888777765443
No 312
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=27.44 E-value=2.1e+02 Score=27.07 Aligned_cols=179 Identities=8% Similarity=0.015 Sum_probs=82.8
Q ss_pred HHhcCCHHHHHHHHHhcccCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHCCCCCCHH---HHHHHHHHhhccCCHHHH
Q 003937 457 YSKAGNINAARRVFNLIHWRQETVSWTSMIVALAQHGLGEEAIQLFERMLELGIKPDHI---TYVGVLTACTHGGLVEQG 533 (785)
Q Consensus 457 y~~~g~~~~A~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~a~~~~g~~~~a 533 (785)
.+..|+.+-+..+++.-... +...-.+.+...+..|+.+ +++.+.+.|..|+.. -.+.+. ..+..|..+-.
T Consensus 38 A~~~g~~~~v~~Ll~~g~~~-~~~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~~~~d~~g~t~L~-~A~~~g~~~~v 111 (285)
T 3kea_A 38 AIADNNVRLVCTLLNAGALK-NLLENEFPLHQAATLEDTK----IVKILLFSGLDDSQFDDKGNTALY-YAVDSGNMQTV 111 (285)
T ss_dssp HHHTTCHHHHHHHHHTTGGG-SCCTTCCHHHHHTTSSSCH----HHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCC-CCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCcHHH-HHHHcCCHHHH
Confidence 34455555555555432110 1111112233334456554 334444556655432 122232 23345666555
Q ss_pred HHHHHHhhhcCCCCCCc---hhHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 003937 534 QRYYNMMKNVHKIKPTP---SHFASMVDLLGRAGLLQEAYNFIENMPLEPDVVAWGSLLSACRVHKNLDLGKIAAEKLLL 610 (785)
Q Consensus 534 ~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 610 (785)
..+++. |..++. .-+.+.+...+..|+.+-+.-+++.-....+...-.+.+......|+.+....+++.-..
T Consensus 112 ~~Ll~~-----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad 186 (285)
T 3kea_A 112 KLFVKK-----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTS 186 (285)
T ss_dssp HHHHHH-----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhc-----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCC
Confidence 544443 333331 111233444556777766666665543222321233444555678888888888877665
Q ss_pred hCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 003937 611 IEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKKT 650 (785)
Q Consensus 611 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~~ 650 (785)
.+..+..-....+..-+..|+. ++.+.+.+.|..+.
T Consensus 187 ~n~~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~ 222 (285)
T 3kea_A 187 TNTNNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIY 222 (285)
T ss_dssp TCTTCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCST
T ss_pred CCcccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCC
Confidence 5433322222212223345554 34555666676543
No 313
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.98 E-value=2.9e+02 Score=24.63 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=34.4
Q ss_pred HHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC
Q 003937 484 SMIVALA---QHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGL 529 (785)
Q Consensus 484 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 529 (785)
-+|+++. +..+.+.|+-.+-+|++.| .|..+.-..++.+....|.
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 3455553 4578999999999999999 8877777777777766664
No 314
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=26.95 E-value=3.8e+02 Score=30.92 Aligned_cols=128 Identities=12% Similarity=-0.024 Sum_probs=62.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHhhhcCCCCCCchhHHHHHHHHhhcC
Q 003937 485 MIVALAQHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGLVEQGQRYYNMMKNVHKIKPTPSHFASMVDLLGRAG 564 (785)
Q Consensus 485 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 564 (785)
++..+...|.++-|.++. . -++-+...--.+..+|...|++++|..+|+++. .|+.++......
T Consensus 816 l~~~L~~~~~~~~a~eL~----~-~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA--~gl~~~~~~~~~--------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G-WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQFAV--------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G-GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CTTCSSCCSCGG---------
T ss_pred HHHHHHHhcHHHHHHHHH----h-hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh--hhcccCcccccc---------
Confidence 445555566655443322 1 123333322234456666777777777776654 244332211100
Q ss_pred CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hCCCCch----hHHHHHHHHHhc
Q 003937 565 LLQEAYNFIENMPLEP-DVVAWGSLLSACRVHKNLDLGKIAAEKLLL-IEPDNSG----AYSALCNLYSSC 629 (785)
Q Consensus 565 ~~~~A~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~p~~~~----~~~~l~~~~~~~ 629 (785)
......++...+.+. ...-|..++.-+.+++-++.+.++.+.+++ ..++|+. .+..+.++.+..
T Consensus 880 -~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 880 -LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp -GHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred -hhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 011112222221111 122456777777888888888888888887 3444443 344444444433
No 315
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=26.48 E-value=21 Score=29.61 Aligned_cols=41 Identities=15% Similarity=0.285 Sum_probs=29.0
Q ss_pred CCCcEEEEc----ccccccchhHHHHHHhhhcCeeEEEecCCcccccCCCccC
Q 003937 732 ENTTLRIMK----NLRVCNDCHSAIKFICKLVDREIVVRDATRFHHFKKGLCS 780 (785)
Q Consensus 732 ~~~~~~~~~----nl~~c~dch~~~~~~s~~~~~~~~~~~~~~~h~~~~g~cs 780 (785)
....+||+. +.++|-+| .+...-..-.+.-+||+|+++.|-
T Consensus 43 ~~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 43 ASSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CCcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 356778873 57788777 333344445689999999999874
No 316
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=26.27 E-value=1.3e+02 Score=25.68 Aligned_cols=64 Identities=22% Similarity=0.333 Sum_probs=40.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhcCCCC---HhHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCC
Q 003937 348 AFTTLLDGYIKIGDIGPARRIFDSLRDRD---VVAWTAMLVGYEQNGL--NKDAVELFRSMVREGPKPN 411 (785)
Q Consensus 348 ~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p~ 411 (785)
..+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+.+..++..+...|+-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 35567777888888888888888887652 2333444444444322 3446677777776665443
No 317
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=26.21 E-value=50 Score=24.95 Aligned_cols=63 Identities=19% Similarity=0.192 Sum_probs=38.0
Q ss_pred cchHHHHHHHHHHHHHHHHcCcccCCCcccccCchhhHhhhhhhchHHHHHHHhhcC---CCCCCcEEEEcccc
Q 003937 673 PQRDAIYNKMAKIWDEIKEMGFVPDTASVLHDVEEDVKEQMLRHHSEKLAIAFGLIS---TPENTTLRIMKNLR 743 (785)
Q Consensus 673 ~~~~~~~~~~~~l~~~~~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~---~~~~~~~~~~~nl~ 743 (785)
+...++.+.+++...+++..||.||...+- . +...+.+|.+-.-||=-- ...+..|++++-|.
T Consensus 13 gdlirIl~~ieekinELk~dG~ePDIiL~G----~----eayef~~e~v~~e~g~e~~~l~~s~LkV~~ieELG 78 (103)
T 2pk8_A 13 GDLIRILGEIEEKMNELKMDGFNPDIILFG----R----EAYNFLSNLLKKEMEEEGPFTHVSNIKIEILEELG 78 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEEEC----H----HHHHHHHHHHHHHHTCCCCCCEETTEEEEECGGGT
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCeEEEc----H----HHHHHHHHHHhHhhccccchhhccCceEEEHHhcC
Confidence 345677888889999999999999986542 1 222334444444454321 22445556665543
No 318
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=25.88 E-value=1.7e+02 Score=27.12 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=48.1
Q ss_pred HHHHHHhCCChhHHHHHHHHhHHC--CCCC----ChhhHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 003937 116 IIVTYNEIGRFKNAIRMFVEMVQD--QVLP----TQFTVTSVLASCTALGDLSAGKKVHSFVVKTGLSGCVNVTNSLLNM 189 (785)
Q Consensus 116 li~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 189 (785)
-+..+....++++|++++++..+. ++++ +.......++.-.....-..+..+.+.+ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 456677778888888887765431 2221 1122222333333323333344444444 22 4445555666677
Q ss_pred HHhCCChHHHHHHHhcCC
Q 003937 190 YAKVGDEMMAKAVFDGMR 207 (785)
Q Consensus 190 ~~~~g~~~~A~~~~~~m~ 207 (785)
+.+.|+.+.|..+|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 778888888888875543
No 319
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=25.02 E-value=3.2e+02 Score=23.20 Aligned_cols=50 Identities=16% Similarity=-0.017 Sum_probs=38.8
Q ss_pred HHHHHHHHHHh--hCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 003937 600 LGKIAAEKLLL--IEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKK 649 (785)
Q Consensus 600 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 649 (785)
.+..+|+.+.. +.-.-+..|...+..+...|++++|.++++.-.+++-+|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 36777887766 445566788889999999999999999998877766554
No 320
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=24.90 E-value=4.3e+02 Score=25.95 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=19.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhCCC
Q 003937 317 NALISCYAKVGGVEIAQKIVEQSGIS 342 (785)
Q Consensus 317 ~~li~~y~~~g~~~~A~~~~~~~~~~ 342 (785)
..++.-|...|+.++|.+.++++...
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 56777788888777777777777644
No 321
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=24.85 E-value=3.5e+02 Score=24.22 Aligned_cols=22 Identities=14% Similarity=0.019 Sum_probs=11.2
Q ss_pred HHHHhccCchHHHHHHHHHHHH
Q 003937 419 LSVSSSLASLDHGKQIHASALR 440 (785)
Q Consensus 419 l~a~~~~~~~~~a~~~~~~~~~ 440 (785)
+......++...+.++.+.+.+
T Consensus 214 l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 214 LQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3334455555555555555443
No 322
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=24.63 E-value=1.3e+02 Score=27.74 Aligned_cols=57 Identities=7% Similarity=-0.060 Sum_probs=32.0
Q ss_pred HHHHHhCCChhHHHHHHHHhHHCCCCCCh-------hhHHHHHHHHhc--cCChhHHHHHHHHHHH
Q 003937 117 IVTYNEIGRFKNAIRMFVEMVQDQVLPTQ-------FTVTSVLASCTA--LGDLSAGKKVHSFVVK 173 (785)
Q Consensus 117 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~t~~~ll~~~~~--~g~~~~a~~~~~~~~~ 173 (785)
+...++.|+.+....+++.+...|..++. .-.+.+..++.. .|+.+-++.+++.-..
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc
Confidence 34445677887777777777776765543 333444444432 2666666555554443
No 323
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=23.70 E-value=98 Score=23.12 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=27.2
Q ss_pred chHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccc
Q 003937 258 DFEALGMFANMLKDSSLKPDKFTLASTLSACANLEK 293 (785)
Q Consensus 258 ~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~ 293 (785)
.++|...|.+||...++.|+ .||...+..+.....
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~-~tWe~~~~~i~~DpR 50 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAF-STWEKELHKIVFDPR 50 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSS-SCHHHHHHHHHTCSG
T ss_pred HHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCCc
Confidence 57899999999999998887 577777776655443
No 324
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.46 E-value=3.1e+02 Score=27.00 Aligned_cols=70 Identities=11% Similarity=0.072 Sum_probs=41.7
Q ss_pred HHHHHHHHhCCChHHHHHHHhcCCCCCc---chHHHHHHHHHhcC-ChHHHHHHhhhcCCCCcccHHHHHHHHh
Q 003937 184 NSLLNMYAKVGDEMMAKAVFDGMRLKNV---SSWNVVVSLHIHSG-RLDLARAQFDQMIERDVVTWNSMIAGYS 253 (785)
Q Consensus 184 ~~li~~~~~~g~~~~A~~~~~~m~~~~~---~~~~~li~~~~~~g-~~~~A~~l~~~~~~~~~~~~~~li~~~~ 253 (785)
..++.-|...|+.++|.+.++++..|.- .....+..++-+.. .-+.+..++..+.+.+..+-..+..||.
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~ 88 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLY 88 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence 5677778888888888888888875531 12222233332221 2234555566665667777777776653
No 325
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=22.88 E-value=3.7e+02 Score=24.79 Aligned_cols=23 Identities=13% Similarity=-0.159 Sum_probs=16.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHH
Q 003937 383 MLVGYEQNGLNKDAVELFRSMVR 405 (785)
Q Consensus 383 li~~~~~~g~~~~A~~~~~~m~~ 405 (785)
-++.+....++++|++++++...
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 35667777788888877776543
No 326
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=22.20 E-value=4.3e+02 Score=23.76 Aligned_cols=51 Identities=12% Similarity=0.182 Sum_probs=36.4
Q ss_pred CHhHHHHHHHHHH---HcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC
Q 003937 376 DVVAWTAMLVGYE---QNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLA 426 (785)
Q Consensus 376 ~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 426 (785)
+-..+..+|+++. +..+++.|+-.+-+|++.|-.|....-..++-+....|
T Consensus 31 ~Gd~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 31 NGQNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3334445666665 46889999999999999998888777777776665554
No 327
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.07 E-value=2.2e+02 Score=24.42 Aligned_cols=70 Identities=11% Similarity=0.024 Sum_probs=50.2
Q ss_pred chHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccchhhHHHHHHHHHHh--cCCCCcchHHHHHHHHHhcCC
Q 003937 258 DFEALGMFANMLKDSSLKPDKFTLASTLSACANLEKLKLGKQIHAYIIRT--EFDATGPVGNALISCYAKVGG 328 (785)
Q Consensus 258 ~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~~~g~ 328 (785)
.+++++-+.+.+++.|++++..- ..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 35666667776688888886543 45667777777777899999999888 766676666666677777773
No 328
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.05 E-value=3.4e+02 Score=24.19 Aligned_cols=45 Identities=9% Similarity=0.183 Sum_probs=34.1
Q ss_pred HHHHHHH---HcCChhHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC
Q 003937 382 AMLVGYE---QNGLNKDAVELFRSMVREGPKPNNYTLSAMLSVSSSLA 426 (785)
Q Consensus 382 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~~ 426 (785)
.+|+++. +..+++.|+-.+-+|++.|-.|....-..++-+....|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 4566664 46889999999999999998888777666666655544
No 329
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.88 E-value=4.3e+02 Score=23.55 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCCCCCHH--HHH-----HHHHHHHhcCCHHHHHHHHHHHHhhCCCCchhHHHHHHH
Q 003937 566 LQEAYNFIENMPLEPDVV--AWG-----SLLSACRVHKNLDLGKIAAEKLLLIEPDNSGAYSALCNL 625 (785)
Q Consensus 566 ~~~A~~~~~~~~~~p~~~--~~~-----~ll~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 625 (785)
++.|+.+++.+.-.-|.. .-. ..+..|.+.|.+++|.+++++.++-.|.+...-.-|..+
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 455666666663222211 111 223448888888888888888877666555444444443
No 330
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=21.45 E-value=1.2e+02 Score=21.87 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=27.6
Q ss_pred CchHHHHHHHHhhhcCCCCCChhhHHHHHHHHhcccc
Q 003937 257 YDFEALGMFANMLKDSSLKPDKFTLASTLSACANLEK 293 (785)
Q Consensus 257 ~~~~A~~l~~~ml~~~g~~p~~~t~~~ll~~~~~~~~ 293 (785)
..++|...|.+||.+.++.|+ .||...+..+....+
T Consensus 13 t~eea~~~F~~LL~e~~V~~~-~tWe~~~~~i~~DpR 48 (71)
T 1uzc_A 13 TKEEAKQAFKELLKEKRVPSN-ASWEQAMKMIINDPR 48 (71)
T ss_dssp SHHHHHHHHHHHHHHTTCCTT-CCHHHHHHHHHTSGG
T ss_pred CHHHHHHHHHHHHHHcCcCCC-CCHHHHHHHHccCcc
Confidence 357899999999999998776 577777776665443
No 331
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.36 E-value=3.1e+02 Score=24.46 Aligned_cols=46 Identities=22% Similarity=0.239 Sum_probs=34.9
Q ss_pred HHHHHHH---HcCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHhhccCC
Q 003937 484 SMIVALA---QHGLGEEAIQLFERMLELGIKPDHITYVGVLTACTHGGL 529 (785)
Q Consensus 484 ~li~~~~---~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~a~~~~g~ 529 (785)
-+|+++. +..+++.|+-.+-+|++.|..|..+.-..++.+....|.
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGl 57 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGN 57 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccC
Confidence 3555554 457899999999999999988888877777766665553
No 332
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.99 E-value=75 Score=24.33 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=16.8
Q ss_pred hhHHHHHHhhCCCCCccHHHHHHHHHHhCCC
Q 003937 95 LDLACEVFNLMPNRDSVSWTTIIVTYNEIGR 125 (785)
Q Consensus 95 ~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 125 (785)
.+.|+++++.++.+...+|..++.++.+.+.
T Consensus 52 ~~kar~Lld~l~~kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 52 QQRAAMLIKMILKKDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHcCH
Confidence 4555555555555555555555555555443
No 333
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=20.97 E-value=4.5e+02 Score=23.45 Aligned_cols=20 Identities=5% Similarity=-0.065 Sum_probs=9.4
Q ss_pred HHHhcccchhhHHHHHHHHH
Q 003937 286 SACANLEKLKLGKQIHAYII 305 (785)
Q Consensus 286 ~~~~~~~~~~~a~~~~~~~~ 305 (785)
......++...+.++.+.+.
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33344455555555544443
No 334
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=20.53 E-value=98 Score=23.62 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHHHhCCChHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 003937 164 GKKVHSFVVKTGLSGCVNVTNSLLNMYAKVGDEMMAKAVFDGMRLKNVSSWNVVVSLHIHSGR 226 (785)
Q Consensus 164 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~~~~li~~~~~~g~ 226 (785)
...+++.+.+.|+-.+.. +..+- ......+.|+++++.++.++...+..++.++.+.+.
T Consensus 24 v~~lld~L~~~~vlt~~~-~e~I~---~~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~ 82 (94)
T 2p1h_A 24 TSYIMDHMISDGFLTISE-EEKVR---NEPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGY 82 (94)
T ss_dssp HHHHHHHHHHHTSSCHHH-HHHHH---TSSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCCCHHH-HHHHH---cCCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCH
Confidence 445666666666432221 11111 124555666666666665555555555555544443
No 335
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=20.17 E-value=4.2e+02 Score=22.80 Aligned_cols=49 Identities=12% Similarity=-0.031 Sum_probs=37.5
Q ss_pred HHHHHHHHHh--hCCCCchhHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 003937 601 GKIAAEKLLL--IEPDNSGAYSALCNLYSSCGKWEDAANIRKSMKYVGVKK 649 (785)
Q Consensus 601 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~g~~~ 649 (785)
...+|..+.. +.-.-+..|...+..|...|++.+|.++++.-.+++-+|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 5667777765 445566778888889999999999999998887776554
Done!