BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003938
(785 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2KCJ|A Chain A, Solution Structure Of Fapp1 Ph Domain
Length = 108
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 41/128 (32%)
Query: 87 ILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKAN 146
+LYKW NY GW+ RWFVL++G+LSYY +D +
Sbjct: 12 VLYKWTNYLTGWQPRWFVLDNGILSYYD--------------------SQDDV------- 44
Query: 147 WSSHRLGFAARQCK-PFGEIHLKVSSVRASKSDDKRL-TIFTGTKTLHLRCISREDRTVW 204
CK G I + V ++ +D+ R+ I G + +++ ++ +R W
Sbjct: 45 ------------CKGSKGSIKMAVCEIKVHSADNTRMELIIPGEQHFYMKAVNAAERQRW 92
Query: 205 IDALQAAK 212
+ AL ++K
Sbjct: 93 LVALGSSK 100
>pdb|3RCP|A Chain A, Crystal Structure Of The Fapp1 Pleckstrin Homology Domain
Length = 103
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 87 ILYKWVNYGKGWRSRWFVLEDGVLSYY 113
+LYKW NY GW+ RWFVL++G+LSYY
Sbjct: 4 VLYKWTNYLTGWQPRWFVLDNGILSYY 30
>pdb|2RSG|A Chain A, Solution Structure Of The Cert Ph Domain
Length = 94
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 38/126 (30%)
Query: 87 ILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKAN 146
+L KW NY GW+ RW VL++ LSYYK ED +
Sbjct: 6 VLSKWTNYIHGWQDRWVVLKNNALSYYK--------------------SEDETEY----- 40
Query: 147 WSSHRLGFAARQCKPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWID 206
C+ G I L + + D+ R I +LR + R WID
Sbjct: 41 -----------GCR--GSICLSKAVITPHDFDECRFDISVNDSVWYLRAQDPDHRQQWID 87
Query: 207 ALQAAK 212
A++ K
Sbjct: 88 AIEQHK 93
>pdb|1ZI7|A Chain A, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|B Chain B, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|C Chain C, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
Length = 406
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 476 DLMRILNVAAFAVSGYAS-------TEGRQCKPFNPLLGETY-----EADYPDKG-LRFF 522
+L R+L V + +S S + G + KP NP LGE + ++P+ G
Sbjct: 53 ELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLL 112
Query: 523 SEKVSHHPMIVA 534
SE+VSHHP + A
Sbjct: 113 SEQVSHHPPVTA 124
>pdb|3SPW|A Chain A, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
pdb|3SPW|B Chain B, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
Length = 436
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 476 DLMRILNVAAFAVSGYAS-------TEGRQCKPFNPLLGETY-----EADYPDKG-LRFF 522
+L R+L V + +S S + G + KP NP LGE + ++P+ G
Sbjct: 80 ELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLL 139
Query: 523 SEKVSHHPMIVA 534
SE+VSHHP + A
Sbjct: 140 SEQVSHHPPVTA 151
>pdb|1ZHT|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 7-Hydroxycholesterol
pdb|1ZHW|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 20-hydroxycholesterol
pdb|1ZHX|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 25-Hydroxycholesterol
pdb|1ZHY|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Cholesterol
pdb|1ZHZ|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Ergosterol
Length = 438
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 13/72 (18%)
Query: 476 DLMRILNVAAFAVSGYAS-------TEGRQCKPFNPLLGETY-----EADYPDKG-LRFF 522
+L R+L V + +S S + G + KP NP LGE + ++P+ G
Sbjct: 82 ELARMLAVTKWFISTLKSQYCSRNESLGSEKKPLNPFLGELFVGKWENKEHPEFGETVLL 141
Query: 523 SEKVSHHPMIVA 534
SE+VSHHP + A
Sbjct: 142 SEQVSHHPPVTA 153
>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Family A Member 6 From Human
Length = 122
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 88 LYKWVNYG-KGWRSRWFVLEDGVLSYYKIHGPDKILMS 124
L+K + G K W RWFVL D L YYK + IL S
Sbjct: 28 LFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGS 65
>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human
Length = 117
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 88 LYKWVNYG-KGWRSRWFVLEDGVLSYYKIHGPDKILMS 124
L+K + G K W RWFVL D L YYK + IL S
Sbjct: 17 LFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGS 54
>pdb|1IO0|A Chain A, Crystal Structure Of Tropomodulin C-Terminal Half
Length = 185
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 10/87 (11%)
Query: 392 GVENEIRPIQYPYVKRRDTLPEPKEKEKPVGLWSIIK--DNIGKDLSGVCLPVYFNEPLS 449
G+ + I+P +Y P P E+ + +K N DL V L N P+
Sbjct: 1 GLNSVIKPTKYK--------PVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVP 52
Query: 450 SLQKCFEDLEYSYLVDQASAWGKQGND 476
+L+ C E L+ + V + S G + ND
Sbjct: 53 TLKACAEALKTNTYVKKFSIVGTRSND 79
>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology
Domain-Containing Protein Family A Member 5 From Human
Length = 128
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 88 LYKWVNYG-KGWRSRWFVLEDGVLSYYKIHGPDKILMS 124
LYK + G K W+ RWFVL D L YY+ + IL S
Sbjct: 27 LYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGS 64
>pdb|2DN6|A Chain A, Solution Structure Of The Ph Domain Of Kiaa0640 Protein
From Human
Length = 115
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 96 KGWRSRWFVLEDGVLSYY 113
K W RWFVL+ ++SYY
Sbjct: 22 KNWTERWFVLKPNIISYY 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,819,302
Number of Sequences: 62578
Number of extensions: 1001831
Number of successful extensions: 1964
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1946
Number of HSP's gapped (non-prelim): 20
length of query: 785
length of database: 14,973,337
effective HSP length: 107
effective length of query: 678
effective length of database: 8,277,491
effective search space: 5612138898
effective search space used: 5612138898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)