Query 003938
Match_columns 785
No_of_seqs 508 out of 2120
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 14:39:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003938.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003938hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1737 Oxysterol-binding prot 100.0 2E-120 5E-125 1050.1 39.7 664 80-772 75-799 (799)
2 KOG2209 Oxysterol-binding prot 100.0 3E-103 7E-108 809.3 15.7 361 404-772 25-445 (445)
3 PF01237 Oxysterol_BP: Oxyster 100.0 1.3E-91 2.7E-96 772.3 22.2 326 422-758 1-353 (354)
4 KOG2210 Oxysterol-binding prot 100.0 4.2E-59 9.1E-64 507.2 20.1 314 418-757 32-377 (392)
5 cd01247 PH_GPBP Goodpasture an 99.9 5.9E-23 1.3E-27 184.5 12.2 89 84-210 1-90 (91)
6 cd01265 PH_PARIS-1 PARIS-1 ple 99.8 1.4E-20 3E-25 170.4 10.9 89 84-212 1-94 (95)
7 PF15413 PH_11: Pleckstrin hom 99.8 3.1E-20 6.7E-25 173.1 8.8 110 84-211 1-112 (112)
8 cd01251 PH_centaurin_alpha Cen 99.8 3.2E-19 7E-24 163.8 11.8 90 84-213 1-101 (103)
9 cd01233 Unc104 Unc-104 pleckst 99.8 7.4E-19 1.6E-23 160.5 12.3 91 82-212 2-98 (100)
10 cd01264 PH_melted Melted pleck 99.8 2.4E-18 5.3E-23 156.9 11.2 90 83-211 1-100 (101)
11 cd01238 PH_Tec Tec pleckstrin 99.7 6.5E-18 1.4E-22 156.0 11.0 91 83-211 1-106 (106)
12 cd01235 PH_SETbf Set binding f 99.7 9.1E-18 2E-22 152.3 11.7 88 85-212 2-101 (101)
13 cd01246 PH_oxysterol_bp Oxyste 99.7 4.2E-17 9E-22 144.3 12.0 90 84-211 1-91 (91)
14 cd01260 PH_CNK Connector enhan 99.7 3.2E-17 7E-22 148.0 11.4 88 84-211 2-96 (96)
15 cd01236 PH_outspread Outspread 99.7 9.5E-17 2.1E-21 147.5 11.0 88 84-210 1-102 (104)
16 PF15409 PH_8: Pleckstrin homo 99.7 1.2E-16 2.6E-21 142.2 10.0 86 86-212 1-89 (89)
17 cd01266 PH_Gab Gab (Grb2-assoc 99.7 1.6E-16 3.5E-21 147.0 10.7 88 84-211 1-107 (108)
18 cd01252 PH_cytohesin Cytohesin 99.7 3.9E-16 8.5E-21 148.1 13.1 92 84-215 2-116 (125)
19 cd01257 PH_IRS Insulin recepto 99.7 3.9E-16 8.4E-21 142.9 12.0 90 82-210 2-100 (101)
20 cd01250 PH_centaurin Centaurin 99.6 1E-15 2.2E-20 136.2 10.9 90 84-211 1-94 (94)
21 cd01241 PH_Akt Akt pleckstrin 99.6 1.8E-15 3.9E-20 138.8 11.7 93 82-211 1-101 (102)
22 cd01245 PH_RasGAP_CG5898 RAS G 99.5 1.5E-14 3.2E-19 131.6 8.9 85 85-210 2-97 (98)
23 cd01244 PH_RasGAP_CG9209 RAS_G 99.5 5.7E-14 1.2E-18 127.9 10.7 85 86-211 5-98 (98)
24 PF00169 PH: PH domain; Inter 99.5 1.7E-13 3.6E-18 121.9 13.1 93 83-212 2-103 (104)
25 KOG0690 Serine/threonine prote 99.5 2E-15 4.4E-20 159.8 -0.5 173 80-291 13-206 (516)
26 cd01219 PH_FGD FGD (faciogenit 99.5 3.4E-13 7.4E-18 123.5 12.5 96 83-213 3-100 (101)
27 cd01263 PH_anillin Anillin Ple 99.4 6.7E-13 1.4E-17 125.4 9.9 92 83-211 2-122 (122)
28 cd01237 Unc112 Unc-112 pleckst 99.4 2E-12 4.4E-17 118.3 9.7 80 95-212 17-103 (106)
29 KOG0930 Guanine nucleotide exc 99.3 2.7E-12 5.8E-17 133.0 9.8 96 81-216 259-379 (395)
30 cd01254 PH_PLD Phospholipase D 99.3 5.6E-12 1.2E-16 119.3 9.8 75 97-211 32-121 (121)
31 smart00233 PH Pleckstrin homol 99.3 4.3E-11 9.4E-16 104.4 12.8 93 83-212 2-101 (102)
32 cd01253 PH_beta_spectrin Beta- 99.2 4.5E-11 9.7E-16 109.5 10.5 92 84-211 1-104 (104)
33 cd00821 PH Pleckstrin homology 99.1 3E-10 6.5E-15 98.2 9.3 91 84-211 1-96 (96)
34 KOG1739 Serine/threonine prote 99.1 2.5E-10 5.5E-15 125.8 10.4 97 80-214 22-118 (611)
35 cd01220 PH_CDEP Chondrocyte-de 99.1 1E-09 2.2E-14 100.4 12.2 93 83-213 3-98 (99)
36 KOG1090 Predicted dual-specifi 99.0 9.3E-11 2E-15 136.8 2.9 95 78-212 1630-1731(1732)
37 cd00900 PH-like Pleckstrin hom 99.0 3.9E-09 8.5E-14 91.9 11.6 87 85-211 2-99 (99)
38 cd01230 PH_EFA6 EFA6 Pleckstri 98.9 1.3E-08 2.8E-13 95.8 12.0 88 96-216 24-115 (117)
39 PF14593 PH_3: PH domain; PDB: 98.8 1.7E-08 3.6E-13 93.0 9.9 93 78-215 9-102 (104)
40 cd01234 PH_CADPS CADPS (Ca2+-d 98.7 3.1E-08 6.8E-13 89.6 5.9 90 83-213 3-111 (117)
41 cd01256 PH_dynamin Dynamin ple 98.6 2.1E-07 4.6E-12 83.6 10.1 89 83-211 2-104 (110)
42 cd01218 PH_phafin2 Phafin2 Pl 98.6 5.5E-07 1.2E-11 83.2 11.8 94 83-215 5-101 (104)
43 cd01249 PH_oligophrenin Oligop 98.4 1.1E-06 2.4E-11 80.6 9.0 47 163-209 52-102 (104)
44 PF15410 PH_9: Pleckstrin homo 98.4 3E-06 6.5E-11 80.1 11.4 103 84-212 2-118 (119)
45 cd01243 PH_MRCK MRCK (myotonic 98.3 6.7E-06 1.4E-10 77.0 11.9 99 81-213 1-120 (122)
46 cd01262 PH_PDK1 3-Phosphoinosi 98.2 7E-06 1.5E-10 73.2 8.4 86 83-212 2-88 (89)
47 cd01261 PH_SOS Son of Sevenles 98.1 2.1E-05 4.5E-10 73.6 11.2 103 82-213 4-110 (112)
48 cd01242 PH_ROK Rok (Rho- assoc 98.1 2.9E-05 6.3E-10 71.8 10.9 91 84-211 2-109 (112)
49 KOG0521 Putative GTPase activa 98.1 1.3E-06 2.7E-11 105.6 2.4 97 80-216 272-372 (785)
50 KOG0248 Cytoplasmic protein Ma 97.8 8.4E-06 1.8E-10 93.8 3.1 98 80-215 247-344 (936)
51 cd01239 PH_PKD Protein kinase 97.8 0.00014 3.1E-09 67.7 9.5 88 84-211 2-117 (117)
52 cd01259 PH_Apbb1ip Apbb1ip (Am 97.8 0.00013 2.8E-09 67.6 9.2 32 84-115 2-33 (114)
53 PTZ00267 NIMA-related protein 97.7 8.3E-05 1.8E-09 85.9 8.1 98 81-213 376-477 (478)
54 KOG3640 Actin binding protein 97.7 6E-05 1.3E-09 89.7 6.5 98 80-214 988-1108(1116)
55 PLN00188 enhanced disease resi 97.5 0.00032 7E-09 82.9 10.3 97 81-215 3-112 (719)
56 cd01258 PH_syntrophin Syntroph 97.5 0.00028 6.1E-09 65.6 6.8 95 86-210 3-107 (108)
57 KOG2059 Ras GTPase-activating 97.4 0.0003 6.4E-09 82.1 6.7 98 79-217 561-669 (800)
58 KOG3723 PH domain protein Melt 97.3 0.00011 2.4E-09 83.5 2.2 97 82-217 735-841 (851)
59 KOG1117 Rho- and Arf-GTPase ac 97.2 0.0002 4.3E-09 84.6 3.7 122 80-242 85-208 (1186)
60 PF12814 Mcp5_PH: Meiotic cell 97.2 0.003 6.5E-08 60.1 11.1 33 180-212 89-121 (123)
61 cd01222 PH_clg Clg (common-sit 97.2 0.0037 8.1E-08 57.2 11.0 87 83-212 5-95 (97)
62 PLN02866 phospholipase D 97.1 0.0029 6.2E-08 77.9 11.9 111 80-215 180-310 (1068)
63 cd01221 PH_ephexin Ephexin Ple 97.0 0.0022 4.8E-08 61.2 7.3 79 98-209 27-119 (125)
64 cd01224 PH_Collybistin Collybi 96.9 0.011 2.3E-07 55.2 11.2 93 83-212 3-107 (109)
65 cd01240 PH_beta-ARK Beta adren 96.5 0.0021 4.6E-08 59.3 3.1 97 82-216 3-102 (116)
66 KOG1451 Oligophrenin-1 and rel 96.4 0.0056 1.2E-07 70.3 6.9 98 81-212 264-367 (812)
67 PF15406 PH_6: Pleckstrin homo 96.4 0.0073 1.6E-07 55.9 6.1 49 161-210 63-111 (112)
68 KOG3751 Growth factor receptor 96.2 0.0073 1.6E-07 68.8 6.3 37 79-115 314-350 (622)
69 KOG0932 Guanine nucleotide exc 96.1 0.0042 9.2E-08 71.0 3.3 107 79-217 503-622 (774)
70 KOG4424 Predicted Rho/Rac guan 95.9 0.01 2.2E-07 68.5 5.6 106 76-216 266-373 (623)
71 KOG0705 GTPase-activating prot 95.5 0.0066 1.4E-07 69.7 2.2 35 180-214 446-481 (749)
72 PF15404 PH_4: Pleckstrin homo 95.3 0.11 2.5E-06 52.9 10.0 32 84-115 1-32 (185)
73 cd01232 PH_TRIO Trio pleckstri 95.2 0.3 6.5E-06 46.1 11.9 99 83-213 6-113 (114)
74 PTZ00283 serine/threonine prot 95.2 0.056 1.2E-06 63.1 8.5 35 179-213 455-490 (496)
75 KOG0248 Cytoplasmic protein Ma 95.1 0.014 3E-07 68.3 2.8 92 78-212 256-348 (936)
76 KOG3543 Ca2+-dependent activat 94.9 0.0081 1.8E-07 69.2 0.5 93 82-215 464-568 (1218)
77 cd01226 PH_exo84 Exocyst compl 94.9 0.26 5.6E-06 45.5 10.1 52 162-213 45-99 (100)
78 cd01228 PH_BCR-related BCR (br 94.9 0.14 3.1E-06 46.5 8.2 90 83-212 4-94 (96)
79 KOG3531 Rho guanine nucleotide 93.4 0.016 3.4E-07 69.2 -1.3 95 80-214 922-1021(1036)
80 cd01227 PH_Dbs Dbs (DBL's big 91.7 2 4.3E-05 41.8 10.9 53 162-214 62-117 (133)
81 KOG1117 Rho- and Arf-GTPase ac 91.1 0.21 4.6E-06 60.1 4.3 94 78-214 188-281 (1186)
82 cd01248 PH_PLC Phospholipase C 90.6 1.3 2.8E-05 41.5 8.3 34 177-210 77-114 (115)
83 PF15408 PH_7: Pleckstrin homo 90.3 0.13 2.8E-06 45.8 1.2 32 85-118 1-32 (104)
84 cd01225 PH_Cool_Pix Cool (clon 89.2 2.3 5.1E-05 39.9 8.5 79 96-211 26-108 (111)
85 cd01223 PH_Vav Vav pleckstrin 88.7 4 8.7E-05 38.7 9.8 33 182-214 79-113 (116)
86 KOG4807 F-actin binding protei 82.5 0.019 4.2E-07 63.1 -9.9 79 97-212 34-114 (593)
87 KOG1170 Diacylglycerol kinase 76.6 0.12 2.7E-06 61.7 -6.6 90 84-214 4-96 (1099)
88 KOG3551 Syntrophins (type beta 74.2 2.1 4.5E-05 47.9 2.4 101 84-211 294-400 (506)
89 KOG1738 Membrane-associated gu 73.1 2.3 5E-05 50.3 2.5 37 82-118 562-601 (638)
90 KOG3520 Predicted guanine nucl 67.5 6.2 0.00013 50.0 4.6 56 162-217 667-726 (1167)
91 KOG4424 Predicted Rho/Rac guan 66.3 7.1 0.00015 46.0 4.5 95 80-214 495-597 (623)
92 PF15405 PH_5: Pleckstrin homo 64.4 8.3 0.00018 37.5 4.0 34 83-116 2-35 (135)
93 KOG3727 Mitogen inducible gene 64.2 1.2 2.7E-05 51.7 -2.0 53 161-213 400-459 (664)
94 KOG0592 3-phosphoinositide-dep 63.2 18 0.00038 42.8 6.9 92 80-216 449-541 (604)
95 KOG3523 Putative guanine nucle 55.6 16 0.00035 43.4 4.9 21 189-209 571-591 (695)
96 KOG3531 Rho guanine nucleotide 50.8 7.8 0.00017 47.4 1.5 101 79-218 747-850 (1036)
97 cd01231 PH_Lnk LNK-family Plec 46.6 80 0.0017 29.5 6.9 41 170-210 65-106 (107)
98 cd01255 PH_TIAM TIAM Pleckstri 45.7 1.2E+02 0.0026 30.1 8.3 28 187-214 129-156 (160)
99 PF08458 PH_2: Plant pleckstri 39.0 49 0.0011 31.3 4.5 33 181-213 72-104 (110)
100 KOG0517 Beta-spectrin [Cytoske 34.5 1.3 2.7E-05 57.7 -8.6 102 79-214 2296-2411(2473)
101 PF14254 DUF4348: Domain of un 32.9 49 0.0011 35.8 3.9 40 566-605 225-266 (273)
102 KOG2070 Guanine nucleotide exc 30.2 76 0.0017 37.1 5.0 77 98-211 325-405 (661)
103 KOG4047 Docking protein 1 (p62 30.1 29 0.00062 40.1 1.8 31 80-110 6-38 (429)
104 KOG4797 Transcriptional regula 28.2 1.2E+02 0.0027 28.4 5.1 36 266-301 66-101 (123)
105 PF09783 Vac_ImportDeg: Vacuol 27.6 2E+02 0.0043 29.4 7.1 55 567-638 22-77 (176)
106 cd05135 RasGAP_RASAL Ras GTPas 27.0 18 0.00039 40.5 -0.5 25 82-106 303-333 (333)
107 PF10504 DUF2452: Protein of u 25.3 56 0.0012 32.8 2.6 25 499-523 85-109 (159)
108 PF10146 zf-C4H2: Zinc finger- 25.3 2.1E+02 0.0045 30.5 7.0 33 261-293 47-79 (230)
109 cd05394 RasGAP_RASA2 RASA2 (or 23.3 17 0.00036 40.3 -1.6 26 82-107 283-313 (313)
110 cd05134 RasGAP_RASA3 RASA3 (or 22.9 23 0.00049 39.3 -0.7 27 81-107 279-310 (310)
111 cd05128 RasGAP_GAP1_like The G 22.2 22 0.00047 39.5 -1.0 27 80-106 284-315 (315)
112 KOG3551 Syntrophins (type beta 20.5 1.4E+02 0.003 34.1 4.7 53 162-214 215-273 (506)
No 1
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.2e-120 Score=1050.12 Aligned_cols=664 Identities=40% Similarity=0.605 Sum_probs=528.3
Q ss_pred CCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccc-hhhhhhcccccccccc----c
Q 003938 80 VSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGED-SIRFMRKANWSSHRLG----F 154 (785)
Q Consensus 80 ~~~~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~-~~~~~~~~~~~~~~~~----~ 154 (785)
.+..++|||+||++++++|++|||+|.+|.|+||++++..+..+..+..+..+.|+.. ...++..... ....+ .
T Consensus 75 ~~~~~~g~l~k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~~~~~~~a~i~~~~~~~~~~~~~~-~q~~~~~~~~ 153 (799)
T KOG1737|consen 75 SGASLEGILLKWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCGGGINLVTAWIQNGERMDICSVDGS-CQIYLVELSK 153 (799)
T ss_pred ccccccceeeccccccCCcccceEEecCcceeeeccCCccccCCCCcccccccccccCCCcccchhhcc-cchhhhhhhH
Confidence 3457899999999999999999999999999999999998888776666666777743 3233322211 11111 1
Q ss_pred cccCCCcceeEEcc-ceEEEecCCCCCceEEEeCCeEEEEEcCC---H-HHHHHHHHHHHHHHHHccccccCC--CCCCC
Q 003938 155 AARQCKPFGEIHLK-VSSVRASKSDDKRLTIFTGTKTLHLRCIS---R-EDRTVWIDALQAAKDLFPRLLTST--DFSPS 227 (785)
Q Consensus 155 ~~~~~~p~G~I~L~-~~si~~s~~d~~~F~I~t~~Rt~~L~A~S---~-edr~~WI~AL~~a~~~~~~~~~~~--~~~~~ 227 (785)
........+.++|. ...+... ++..++.+.+.+.+.+++.+. . +++..|+.+++.+..++++..... ...+.
T Consensus 154 ~~~~~~~~~~~~l~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~~~ 232 (799)
T KOG1737|consen 154 KLQRQGWLHALELAPLIAVEQT-SEYENENKSVMTKRIPLSIAVISVAQETREINVDVLRLLSSLPNLTGQLLLRELNAL 232 (799)
T ss_pred HHhhcchhhhhhhccchhhhcc-ccccccccccccccccchhhhhcccccchhhhhhhhhhccccccchhhhhhhhhccc
Confidence 12233455666676 5556655 677788888888888887764 3 789999999999999887743221 11111
Q ss_pred cc-----------cccchHHHHHHHhhcccchhhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 003938 228 ED-----------VVVSTERLRLRLLQEGVGDSVIKDCESIMLSEHSDLQNQLNALQRKHIMLLGTLRQLETEKMELEAT 296 (785)
Q Consensus 228 ~~-----------~~~s~e~lr~rL~e~~~~e~~ik~~e~i~~~e~s~l~~~l~~l~~~~~~ll~~l~~Le~ek~~le~t 296 (785)
.+ +...++++.++++.++.+...+++||+++++++...+.++....+++..|.++++||++++.+||.+
T Consensus 233 ~~~~~~~s~s~~k~~~~~e~~~~k~~~s~~s~~a~~~~e~~~~s~~~~~s~~s~~~~~q~~~l~~~l~~le~q~~~le~a 312 (799)
T KOG1737|consen 233 LEDKKEQSSSKSKLQERTERIALKVLTSLASVFAECDDEAELLSQSRIESDASHSESEQRIRLQEALSALENQNTDLEVA 312 (799)
T ss_pred cccccccccchhhhHHHHHHHHHHHhhhhHHHHhHHHHHHHHHHHhHhhhhhhcchhhhhhhhhhHHHHHHhhhhhHHHH
Confidence 11 2334788889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccccCCCCccccCccccccCCCCCCCCcccccCCCCCCCCCCCCccccccccccCc--ccccc---------
Q 003938 297 VVDETKERDSYCGQGNRRYSDFYSVMSEGSASDSDAENESQDGADVETDEDDGIFFDTNDFLSS--EALRS--------- 365 (785)
Q Consensus 297 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~f~da~~~~~~--~~~~~--------- 365 (785)
++.....+........ +.. +. + ......+..+++++||||.+.++. ....+
T Consensus 313 ~~~~~~~~~~~~~~~~-------------~~~-~~-~---~~~~~~~~~~e~~e~~da~s~~s~~~~~~~s~~~~e~~~s 374 (799)
T KOG1737|consen 313 LRRAHAAQAALDLSKV-------------TRL-SL-L---HEEESFSESDELTEQFDAESSLSDAQESLDSNSESENEGS 374 (799)
T ss_pred HhHhhhhhhccCcccc-------------ccc-cc-c---ccccccccccccccccccccccchhhhccCCccccccccc
Confidence 8664443322211111 000 11 1 111334445666889999886541 00000
Q ss_pred cccccc-ccccccccc---ccccchhccccCccCcccccCCCCccccCCCCCCccCCCCchhHHHhhcccCCCCCccccc
Q 003938 366 VSYRSR-EAMGHACIY---DKELLFSDRLRGVENEIRPIQYPYVKRRDTLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLP 441 (785)
Q Consensus 366 ~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~rR~~lP~~~~~~~~~slwsilK~~iGkDLskIslP 441 (785)
....+. ++++..+-. ..+... ....+..+. .....+..+||++||+|..++.+++||+|||++||||||+|+||
T Consensus 375 ~~~~s~~s~~~~~~~~~~~~~d~~~-~~~~~~~~~-~~~~~~~~~rr~~lp~~~~~~~~islw~~~k~~iGkDlskv~~P 452 (799)
T KOG1737|consen 375 EDEESYTSDISDNGSSDALSADGDK-SSQALNEKV-PSGSGAEVARRTNLPAPSKPSSSISLWSILRNNIGKDLSKVSMP 452 (799)
T ss_pred ccccccccccccCCCcccccccccc-ccccccccc-cccccccccccccCCCCcCcCCCccHHHHHhhcccccccccccc
Confidence 000000 000000000 000000 000011100 00114457899999999888999999999999999999999999
Q ss_pred cccccccChHHhhhhcccchHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcccccCCcCCCCCCCCCCeEEEEcCCCCeEE
Q 003938 442 VYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRF 521 (785)
Q Consensus 442 v~~~EP~S~LQr~~e~~ey~~lLd~Aa~~~~~~d~~eR~~~V~aF~vS~y~~~~~r~~KPfNPlLGETfe~~~~d~g~r~ 521 (785)
|+||||+|+|||++|+|||++|||+|+++ .||++||++|+||++|+|+.+..|.+|||||||||||||+++|+|+||
T Consensus 453 V~~nEP~S~LQr~~EdlEYs~LLd~A~~~---~d~~~R~~~vaafavS~Ya~t~~r~~KPFNPlLgETyE~~r~dkg~rf 529 (799)
T KOG1737|consen 453 VEFNEPLSLLQRVAEDLEYSELLDKAANY---EDPLERMVYVAAFAVSSYSSTSRRTAKPFNPLLGETYEMDRPDKGLRF 529 (799)
T ss_pred eecCCcchHHHHhhhhccchhhhHHHHhc---CCcHHHHHHHHHHHhhhcchhcccccCCCCcccccceEeeccCCceee
Confidence 99999999999999999999999999996 789999999999999999999999999999999999999999999999
Q ss_pred EEeecccCCCeeEEE-----E----------EEEeeEEEEEeceEEEEEecC-CceEEEeeeeeeeeeeeeceeeEeecc
Q 003938 522 FSEKVSHHPMIVACH-----W----------KFWGRSIQLDPVGVLTLQFDD-GETFQWSKVTTSIYNIILGKIYCDHYG 585 (785)
Q Consensus 522 iaEQVSHHPPIsA~~-----w----------kF~G~Si~i~~~G~~~l~f~~-ge~Y~~~~p~~~i~nii~G~~~~e~~G 585 (785)
|+|||||||||+||| | ||||+||+|.|.|.++|+|++ |++|+|.+|++.|+|||+|++|||++|
T Consensus 530 ~sEqVSHhPPi~A~h~es~~w~~~~ds~~~sKF~Gksi~v~P~G~l~l~~~~~G~~~~w~kvtt~v~nii~Gk~~~D~~g 609 (799)
T KOG1737|consen 530 FSEQVSHHPPISACHAESNNWTFWGDSKVKSKFWGKSIEVPPLGILHVTLKNIGEHYSWAKVTTTVHNIILGKLWVDHYG 609 (799)
T ss_pred eeeeeccCCCcccccccCCCceeeccccccccccccceeecCCceEEEEEcCCCccccccCccceecceeeccccccccc
Confidence 999999999999999 3 999999999999999999996 999999999999999999999999999
Q ss_pred eEEEEcCC-C-ceEEEEEeecCccCCCCceEEEEEEeCCCCcEEEEEEEEEcceEEEEeCCCCCCCCCCCCCCCcEEEEe
Q 003938 586 TMRIRGSG-N-YSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLVGKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWE 663 (785)
Q Consensus 586 ~~~I~~~t-g-~~~~l~F~~~~~~~~~~~~V~G~V~~~~~g~~~~~i~G~Wd~~l~~~~~~~~~k~~~~~~~~~~~~lW~ 663 (785)
.|.|+|++ + .+|.|+|++.|||+++.++|.|.|++ .+|++++++.|+|++.|++..++..+ ...+.....++|+
T Consensus 610 e~~i~n~~~~~~~c~L~F~~~~~~~~~~~ev~g~V~~-~s~~~~~~l~GkW~e~~~~~~~~~~~---~~~~~~~~~~iWk 685 (799)
T KOG1737|consen 610 EMEITNHTTGSDKCKLKFVKAGYFSRNAREVEGSVRN-KSGKKVEVLTGKWDESLYYFKVDKVG---LPEPETSEKLIWK 685 (799)
T ss_pred cEEEecCCCCcceeEEEEeeecccCCCcceeEEEEeC-CCCceeEEEeeeehhhhhhccccccc---cccCCccceeeee
Confidence 99999964 5 56999999999999999999999999 99999999999999999987666432 3445567899999
Q ss_pred cCCCCcccccCcccccccccCCCccccCCCCCCCCcchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhc---CCCCCc
Q 003938 664 RGKTVTKTRYNLTPFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELANAEKLRLEQLQRQARQLQE---SGWQPS 740 (785)
Q Consensus 664 ~~~~~~~~~y~ft~fa~~LNe~~~~~~~~l~pTDSR~RpD~raLe~Gd~d~A~~eK~rLEe~QR~~Rk~re---~~w~P~ 740 (785)
+++.|+..+|+||.||++||+++|.+.+.|||||||+|||||+||+|+|++|+.||.||||+||++|+.|+ ..|+|+
T Consensus 686 ~~~~Pkn~~y~ft~fai~LNel~p~l~~~lpPTDSRlRPDqr~lE~G~~~~a~~EK~rlEe~QR~~r~~re~~~~~~~pr 765 (799)
T KOG1737|consen 686 ANDLPKNNKYNFTGFAIELNELTPHLKKLLPPTDSRLRPDQRALENGEYDEANAEKLRLEEKQRARRRKREENGEEYEPR 765 (799)
T ss_pred cCCCCCCcccccchhheecccCCchhhccCCCCCcccCcchhhhhccChhhhhhhhHhHHHHHHHHHHHHHhhccccccc
Confidence 99988768999999999999999999999999999999999999999999999999999999999988765 359999
Q ss_pred eeEeCCCC--ceEEcCChhhhhccCCCCCCCccc
Q 003938 741 WFCKDEDG--CYRYMGGYWEAREKGDWGDIAEIF 772 (785)
Q Consensus 741 ~F~~~~~~--~~~y~g~Ywe~r~~~~w~~~~dif 772 (785)
||.++.+. .|+|+|+||++|++.+|..|+|||
T Consensus 766 wF~~~~~~~~~~~~ng~Ywe~r~~~d~~~~~~if 799 (799)
T KOG1737|consen 766 WFEKVKDPSTYWVYNGGYWEAREKQDWKDCPDIF 799 (799)
T ss_pred cccccCCCcceEEecCchheeecccCccccccCC
Confidence 99999433 699999999999999999999998
No 2
>KOG2209 consensus Oxysterol-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-103 Score=809.33 Aligned_cols=361 Identities=42% Similarity=0.753 Sum_probs=333.9
Q ss_pred CccccCCCCCCccCCCCchhHHHhhcccCCCCCccccccccccccChHHhhhhcccchHHHHHHHhcCCCCCHHHHHHHH
Q 003938 404 YVKRRDTLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNV 483 (785)
Q Consensus 404 ~~~rR~~lP~~~~~~~~~slwsilK~~iGkDLskIslPv~~~EP~S~LQr~~e~~ey~~lLd~Aa~~~~~~d~~eR~~~V 483 (785)
..+.||.||+|+-....+|||+|||+||||||++|+|||.||||+|||||++|+|+|.+||.+|+.+ .||+|||.+|
T Consensus 25 ~hk~RT~LPa~m~sr~d~SIW~Ilr~ciGkelSkiTmPV~~NEPLSFLQRltEyme~~yLi~kAs~~---~~p~eRmqyV 101 (445)
T KOG2209|consen 25 IHKHRTSLPAPMFSRNDFSIWSILRKCIGKELSKITMPVIFNEPLSFLQRLTEYMEHTYLIHKASSQ---SDPVERMQYV 101 (445)
T ss_pred hhhhcccCCccccccccccHHHHHHhhhchhhhheeeeeeeCCcHHHHHHHHHHHHHHHHHHHHhhC---CChHHHHHHH
Confidence 3469999999999999999999999999999999999999999999999999999999999999985 8999999999
Q ss_pred HHHHhhhcccccCCcCCCCCCCCCCeEEEEcCCCCeEEEEeecccCCCeeEEE-------E----------EEEeeEEEE
Q 003938 484 AAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACH-------W----------KFWGRSIQL 546 (785)
Q Consensus 484 ~aF~vS~y~~~~~r~~KPfNPlLGETfe~~~~d~g~r~iaEQVSHHPPIsA~~-------w----------kF~G~Si~i 546 (785)
+|||||..++...|..||||||||||||+.+.|-|+||||||||||||||||| | ||||+||++
T Consensus 102 AAFAvsavas~weR~gKPFNPLl~et~el~r~dlg~R~i~EQVSHHPPiSAfhaEgl~~dF~fhGsi~PklkFWgksvea 181 (445)
T KOG2209|consen 102 AAFAVSAVASQWERTGKPFNPLLGETYELEREDLGFRFISEQVSHHPPISAFHAEGLNNDFIFHGSIYPKLKFWGKSVEA 181 (445)
T ss_pred HHHHHHHHHHhHHHhcCCCcchhhhhhhheecccceEEeehhhccCCChhHhhhcccCcceEEeeeecccceeccceeec
Confidence 99999999999899999999999999999999999999999999999999999 2 999999999
Q ss_pred EeceEEEEEec-CCceEEEeeeeeeeeeeeeceeeEeecceEEEEcC-CCceEEEEEeecCccCCCCceEEEEEEeCCCC
Q 003938 547 DPVGVLTLQFD-DGETFQWSKVTTSIYNIILGKIYCDHYGTMRIRGS-GNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTG 624 (785)
Q Consensus 547 ~~~G~~~l~f~-~ge~Y~~~~p~~~i~nii~G~~~~e~~G~~~I~~~-tg~~~~l~F~~~~~~~~~~~~V~G~V~~~~~g 624 (785)
.|.|.++|+|. .||.|+|+.|++.|||||+|++||+++|+|.|.|+ ||+.|++.|++.|+||++.|+|+|+|+| ++.
T Consensus 182 ~Pkgtitle~~k~nEaYtWtnp~CcvhNiIvGklwieqyg~~eI~nh~Tg~~~vl~Fk~~G~~gk~lHkVEG~i~d-~~k 260 (445)
T KOG2209|consen 182 EPKGTITLELLKHNEAYTWTNPTCCVHNIIVGKLWIEQYGNVEIINHKTGHKCVLNFKPCGLFGKELHKVEGHIQD-KSK 260 (445)
T ss_pred CCCceEEEEecccCcceeccCCcceeeeehhhhhhHhhcCcEEEEecCccceeEEecccccccccchhheeehhhc-ccc
Confidence 99999999998 59999999999999999999999999999999995 8999999999999999999999999999 889
Q ss_pred cEEEEEEEEEcceEEEEeCCCC-----------C-----CC------CC---------CCCCCCcEEEEecCCCCc--cc
Q 003938 625 EKVAMLVGKWDEAMYYVLGDPT-----------T-----KP------KG---------YDPMTEAVLLWERGKTVT--KT 671 (785)
Q Consensus 625 ~~~~~i~G~Wd~~l~~~~~~~~-----------~-----k~------~~---------~~~~~~~~~lW~~~~~~~--~~ 671 (785)
++++.|.|+|++.|+.+..... . +. .+ +...++.++||.+++.|+ ..
T Consensus 261 ~kl~~lYGkWTe~l~~cd~esf~~~~Kq~~r~~~~r~~s~~~~~see~dd~P~~ds~~v~~iPgSk~LW~~n~rP~n~~~ 340 (445)
T KOG2209|consen 261 KKLCALYGKWTECLYSCDPESFDAFKKQDKRNTEERKNSKQMSTSEELDDMPVPDSESVFIIPGSKLLWRINPRPPNSAQ 340 (445)
T ss_pred ccchhhhccHHHHHhcCCHHHHHHHHHhhhhcchhhhhhccCCchhhccCCCCCCcceeEecCCCeEEEEecCCCCCHHH
Confidence 9999999999999987532110 0 00 00 111457799999999888 89
Q ss_pred ccCcccccccccCCCccccCCCCCCCCcchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHhh---cCCCCCceeEeCCCC
Q 003938 672 RYNLTPFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELANAEKLRLEQLQRQARQLQ---ESGWQPSWFCKDEDG 748 (785)
Q Consensus 672 ~y~ft~fa~~LNe~~~~~~~~l~pTDSR~RpD~raLe~Gd~d~A~~eK~rLEe~QR~~Rk~r---e~~w~P~~F~~~~~~ 748 (785)
+|+||.||+.|||+.+++..-+||||||+|||+|+||+|++|.|.+||.||||+||++||.| +..|+|+||++.+++
T Consensus 341 ~y~FT~FalsLNem~~~M~~tl~pTD~RlRpDi~~mE~G~~D~AseeK~rlEEkQRe~Rk~rs~~~~dw~~rWF~~~~np 420 (445)
T KOG2209|consen 341 MYNFTSFALSLNEMDKGMESTLPPTDCRLRPDIRAMENGNIDQASEEKKRLEEKQREARKNRSKSEEDWKTRWFHQGPNP 420 (445)
T ss_pred hhchhhheeehhhhccCcccccCCcccccCchhhhhhcCCcchhHHHHHHHHHHHHHHHhhcccccccCcchhcccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999988 457999999998443
Q ss_pred -----ceEEcCChhhhhccCCCCCCCccc
Q 003938 749 -----CYRYMGGYWEAREKGDWGDIAEIF 772 (785)
Q Consensus 749 -----~~~y~g~Ywe~r~~~~w~~~~dif 772 (785)
.|.|.||||+ +++++|||||
T Consensus 421 ~t~~~dWlYsGgYwd----R~ysn~~~i~ 445 (445)
T KOG2209|consen 421 YTGAQDWLYSGGYWD----RNYSNCPDIY 445 (445)
T ss_pred CCCcccceeecCccc----cccccCcccC
Confidence 4999999998 6899999998
No 3
>PF01237 Oxysterol_BP: Oxysterol-binding protein ; InterPro: IPR000648 A number of eukaryotic proteins that seem to be involved with sterol synthesis and/or its regulation have been found [] to be evolutionary related. These include mammalian oxysterol-binding protein (OSBP), a protein of about 800 amino-acid residues that binds a variety of oxysterols (oxygenated derivatives of cholesterol); yeast OSH1, a protein of 859 residues that also plays a role in ergosterol synthesis; yeast proteins HES1 and KES1, highly related proteins of 434 residues that seem to play a role in ergosterol synthesis; and yeast hypothetical proteins YHR001w, YHR073w and YKR003w.; PDB: 3SPW_A 1ZI7_C 1ZHW_A 1ZHX_A 1ZHY_A 1ZHZ_A 1ZHT_A.
Probab=100.00 E-value=1.3e-91 Score=772.31 Aligned_cols=326 Identities=48% Similarity=0.858 Sum_probs=250.2
Q ss_pred hhHHHhhcccCCCCCccccccccccccChHHhhhhcccchHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcccccCCcCCC
Q 003938 422 GLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGYASTEGRQCKP 501 (785)
Q Consensus 422 slwsilK~~iGkDLskIslPv~~~EP~S~LQr~~e~~ey~~lLd~Aa~~~~~~d~~eR~~~V~aF~vS~y~~~~~r~~KP 501 (785)
|||++||+++||||++|+|||+||||+|+|||++++|+|++||++|+. .+||++||++|++|+||+|+.+..|++||
T Consensus 1 s~w~~lK~~~G~dLs~islPv~~~eP~S~Lqr~~~~~~y~~lL~~Aa~---~~d~~eR~~~V~~f~~S~~~~~~~~~~KP 77 (354)
T PF01237_consen 1 SIWSFLKQKIGKDLSRISLPVFFNEPRSFLQRLAEDFEYPDLLDKAAE---EDDPLERMLYVAAFALSSYSSTPGRTKKP 77 (354)
T ss_dssp HHHHHHHHT--S-GGGS---GGGEEEEEGGGGGGGGSSSHHHHHGGGG---S-HHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CHHHHhhhcCCCChhcCccCceecCCCcHHHhhhhhhhChHHHhccCC---CCCHHHHHHHHHHHHHhhhhhhcCCCCcC
Confidence 699999999999999999999999999999999999999999999987 49999999999999999999988788999
Q ss_pred CCCCCCCeEEEEcCCCCeEEEEeecccCCCeeEEE-----E----------EEEeeEEEEEeceEEEEEecC-CceEEEe
Q 003938 502 FNPLLGETYEADYPDKGLRFFSEKVSHHPMIVACH-----W----------KFWGRSIQLDPVGVLTLQFDD-GETFQWS 565 (785)
Q Consensus 502 fNPlLGETfe~~~~d~g~r~iaEQVSHHPPIsA~~-----w----------kF~G~Si~i~~~G~~~l~f~~-ge~Y~~~ 565 (785)
||||||||||+.++ +|++|+||||||||||+||| | +|+|+||++.+.|.++|+|.+ ||+|+|+
T Consensus 78 fNPiLGETfe~~~~-~~~~~~aEQVSHHPPisa~~~~~~~~~~~g~~~~~~kf~g~sv~~~~~G~~~i~f~~~~e~Y~~~ 156 (354)
T PF01237_consen 78 FNPILGETFELVRP-DGTRFIAEQVSHHPPISAFHAEGRGWKFYGHIEPKSKFWGNSVEVNPIGKVTITFPDGGETYTWT 156 (354)
T ss_dssp E---TT-EE--TT--T-EEEEEEEEETTTTEEEEEEEETTEEEEEEEEEEEEE-TT-EEEEEEEEEEEEET--TEEEEEE
T ss_pred cCCCCcceeeeccC-ceEEEEEecccCCCCceEEEEEcCCEEEEEEEeeeEEEeceEEEEEECCcEEEEEcCCceEEEEe
Confidence 99999999999988 79999999999999999999 3 999999999999999999996 7999999
Q ss_pred eeeeeeeeeeeceeeEeecceEEEEcC-CCceEEEEEeecCccCCCCceEEEEEEeCCCCcEEEEEEEEEcceEEEEeCC
Q 003938 566 KVTTSIYNIILGKIYCDHYGTMRIRGS-GNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLVGKWDEAMYYVLGD 644 (785)
Q Consensus 566 ~p~~~i~nii~G~~~~e~~G~~~I~~~-tg~~~~l~F~~~~~~~~~~~~V~G~V~~~~~g~~~~~i~G~Wd~~l~~~~~~ 644 (785)
+|++.|+||++|++|+|++|+|+|+|. +|++|+|+|+++|||+++.+.|+|.|++ .+|++++.|.|+||+.|++...+
T Consensus 157 ~p~~~i~gi~~G~~~~e~~G~~~i~~~~tg~~~~i~f~~~~~f~~~~~~v~G~I~~-~~~~~~~~i~G~W~~~i~~~~~~ 235 (354)
T PF01237_consen 157 KPTTYIRGIIFGKRYIEHVGKMVITCHKTGLKAEIEFKPKGWFSGKSNEVEGKIYD-SKGKPIYKISGKWDEEIYIKDVK 235 (354)
T ss_dssp --SEEEESTTTTS-EEEEESEEEEEET-TS-EEEEEEETSSSTSSSTTEEEEEEES-SGGG-SEEEEEETTSEEEEEETT
T ss_pred cCcEEEeeeecccEEEEecCCEEEEcCCcceEEEEEEecCCcccccceeeEEEEEE-ccCceeEEeeeeeCCeEEEEecc
Confidence 999999999999999999999999995 8999999999999999999999999999 89999999999999999998765
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCc--ccccCcccccccccCCCccccCCCCCCCCcchhhHHHHhcCCHHHHHHHHHHH
Q 003938 645 PTTKPKGYDPMTEAVLLWERGKTVT--KTRYNLTPFAISLNELTPGLLDKLPPTDSRLRPDQRYLENGEYELANAEKLRL 722 (785)
Q Consensus 645 ~~~k~~~~~~~~~~~~lW~~~~~~~--~~~y~ft~fa~~LNe~~~~~~~~l~pTDSR~RpD~raLe~Gd~d~A~~eK~rL 722 (785)
... ..++..++|++++.+. ..+|+||.||++|||+++++.+.++|||||+|||+|||++||+++|+++|.+|
T Consensus 236 ~~~------~~~~~~~lw~~~~~~~~~~~~~~ft~fa~~LNe~~~~~~~~~~ptDSr~R~d~~al~~gd~~~A~~eK~~l 309 (354)
T PF01237_consen 236 NDS------DTGESKLLWDANPLPPNPKKYYGFTQFAIPLNELTPELEEKLPPTDSRWRPDQRALENGDIDKAQEEKKRL 309 (354)
T ss_dssp ----------GGGEEEEEETTTS-SS--B----------G-------G-GS-TTBHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred ccc------cCCCceEEEECCCCcccccceecccccccccccccccccccCCchhccchHHHHHHHcCCHHHHHHHHHHH
Confidence 210 1135789999998776 67899999999999999987789999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc---CCCCCceeEeC-----CCCceEEcCChhh
Q 003938 723 EQLQRQARQLQE---SGWQPSWFCKD-----EDGCYRYMGGYWE 758 (785)
Q Consensus 723 Ee~QR~~Rk~re---~~w~P~~F~~~-----~~~~~~y~g~Ywe 758 (785)
||+||++||+|+ ..|+|+||+++ +...|+|+||||+
T Consensus 310 Ee~QR~~rk~R~~~~~~w~Pr~F~~~~d~~~~~~~w~~~g~YW~ 353 (354)
T PF01237_consen 310 EEKQRADRKERKEKGEEWKPRWFEKVEDPSTEEEEWVYKGGYWE 353 (354)
T ss_dssp HHHHHHHHHHHHHCT--GGGSSEEEEE-SSS--T----------
T ss_pred HHHHHHHHHHHHHcCCCccCCeEEECCCCCCccccccccccccC
Confidence 999999999875 46999999988 3357999999997
No 4
>KOG2210 consensus Oxysterol-binding protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.2e-59 Score=507.21 Aligned_cols=314 Identities=26% Similarity=0.376 Sum_probs=268.9
Q ss_pred CCCchhHHHhhc-ccCCCCCccccccccccccChHHhhhhcccchHHHHHHHhcCCCCCHHHHHHHHHHHHhhhcccccC
Q 003938 418 EKPVGLWSIIKD-NIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSYLVDQASAWGKQGNDLMRILNVAAFAVSGYASTEG 496 (785)
Q Consensus 418 ~~~~slwsilK~-~iGkDLskIslPv~~~EP~S~LQr~~e~~ey~~lLd~Aa~~~~~~d~~eR~~~V~aF~vS~y~~~~~ 496 (785)
+.+..||.++++ .+|+|||+|+||.|++||+|+||++++.+.+.+||-.+.. .+||++||+.|++|++|+|+....
T Consensus 32 ~~~s~i~~L~sq~rpg~DLs~v~LPtfile~rs~Le~~~~~~~~~dll~~~~~---~~~p~~R~~~VvkwylS~~~~~~~ 108 (392)
T KOG2210|consen 32 EGKSIILDLLSQLRPGMDLSRVVLPTFILEPRSLLEKYTDFSYHPDLLLEASS---EADPLERMLAVVKWYLSGFHAGPK 108 (392)
T ss_pred hccceeecHhhhccCCCCcccccchhhhhhhHHHHHHhhhhhhccchhccccc---CCCHHHHhhhheeeeehhcccccc
Confidence 445668999998 8999999999999999999999999999988888877765 589999999999999999999988
Q ss_pred CcCCCCCCCCCCeEEEEcC-----C-CCeEEEEeecccCCCeeEEE--------------E---EEEeeEEEEEeceEEE
Q 003938 497 RQCKPFNPLLGETYEADYP-----D-KGLRFFSEKVSHHPMIVACH--------------W---KFWGRSIQLDPVGVLT 553 (785)
Q Consensus 497 r~~KPfNPlLGETfe~~~~-----d-~g~r~iaEQVSHHPPIsA~~--------------w---kF~G~Si~i~~~G~~~ 553 (785)
...|||||||||||.|.|. + ..+.|+|||||||||||||| | ||.|+||.|.+.|..+
T Consensus 109 ~~~~PyNPILGEtF~~~w~~~~~p~~~~~~~iAEQVSHHPPvSAf~~~~~~~~i~v~g~v~~kSkF~G~s~~V~~~G~~~ 188 (392)
T KOG2210|consen 109 GRKKPYNPILGETFTCHWKYPPHPSKGDTVFVAEQVSHHPPVSAFYVTCPKKGIQVDGHVWAKSKFLGNSIAVAMIGKGV 188 (392)
T ss_pred cccCCCCccchhhcccccccCCCCCCceEEEEeecccCCCCcceeeEEccccCeEEEEEEeecccccccceeEEEcCCcE
Confidence 8888999999999999982 2 35899999999999999999 2 9999999999999999
Q ss_pred EEecC-CceEEEeeeeeeeeeeeeceeeEeecceEEEEc-CCCceEEEEEeecCccCCCCceEEEEEEeCCCCcEEEEEE
Q 003938 554 LQFDD-GETFQWSKVTTSIYNIILGKIYCDHYGTMRIRG-SGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLV 631 (785)
Q Consensus 554 l~f~~-ge~Y~~~~p~~~i~nii~G~~~~e~~G~~~I~~-~tg~~~~l~F~~~~~~~~~~~~V~G~V~~~~~g~~~~~i~ 631 (785)
|+|.+ +|+|.++.|..+++|+++|.+|+|+.|+++|.| ++++.+.+.|+.++|+|+..+.+.|.|+.+...+..+.|.
T Consensus 189 l~ll~~~E~Y~~t~P~~~~rg~~~~~p~velggkv~I~c~kt~~~a~~~~~~~~f~g~~~s~~~~~ik~~~~~~~~~~i~ 268 (392)
T KOG2210|consen 189 LKLLDHDETYLITFPNAYARGILLGAPWVELGGKVVIECPKTGLSAILESILKPFLGGKNSFNARSIKGPIDKKDFCSIS 268 (392)
T ss_pred EEEEecCcceeeccCCceeeeeeeccceEecCceEEEEcCCcceeeeEeeccCcccccccccceEEEEcccccccccccc
Confidence 99885 999999999999999999999999999999999 6899999999999999999999999999855566778899
Q ss_pred EEEcceEEEEeCCCCCCCCCCCCCCCcEEEEecCCCCcccccCcccccccccCCCccccCCCCCCCCcc--hhhHHHHhc
Q 003938 632 GKWDEAMYYVLGDPTTKPKGYDPMTEAVLLWERGKTVTKTRYNLTPFAISLNELTPGLLDKLPPTDSRL--RPDQRYLEN 709 (785)
Q Consensus 632 G~Wd~~l~~~~~~~~~k~~~~~~~~~~~~lW~~~~~~~~~~y~ft~fa~~LNe~~~~~~~~l~pTDSR~--RpD~raLe~ 709 (785)
|+||+.|+++..+.. +...+-+....+.. .....+.++|-|.+||+ +++++||..
T Consensus 269 G~W~~~~~~k~~~~~----------~~~~~~d~~~~~~~-------------~~~v~pLeEQ~e~ESrrlWk~Vt~ai~~ 325 (392)
T KOG2210|consen 269 GEWDGVMYAKYAKSG----------ESRNFVDCKKLPVT-------------KPKVRPLEEQGEYESRRLWKEVTEAILA 325 (392)
T ss_pred eeecccEEEEEcCCC----------ceeecccccccCcC-------------CCCcCChHHcCcHHHHHHHHHHHHHHHh
Confidence 999999999876541 11222222222210 01111345678999997 689999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhc---CCCCCceeEeC-CCCceEEcCChh
Q 003938 710 GEYELANAEKLRLEQLQRQARQLQE---SGWQPSWFCKD-EDGCYRYMGGYW 757 (785)
Q Consensus 710 Gd~d~A~~eK~rLEe~QR~~Rk~re---~~w~P~~F~~~-~~~~~~y~g~Yw 757 (785)
||++.|+++|..|||+||++||.|+ ..|+|+||..+ .++.|.|...-|
T Consensus 326 ~d~~~Ate~K~~iEe~QR~~ak~ree~g~~W~pk~F~~~~~~~~~~~~~~~~ 377 (392)
T KOG2210|consen 326 GDIEQATEEKFELEEKQRELAKKREESGEEWKPKLFKVDEDGGDWDYRNYLP 377 (392)
T ss_pred ccHHHHhHHHhHHHHHHHHHHHHHHHhCCcceecceeEcCCCCCcccccccc
Confidence 9999999999999999999988775 46999999999 445799875544
No 5
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.89 E-value=5.9e-23 Score=184.49 Aligned_cols=89 Identities=35% Similarity=0.652 Sum_probs=78.7
Q ss_pred eEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcce
Q 003938 84 VAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFG 163 (785)
Q Consensus 84 ~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G 163 (785)
++|||+||||++|+||+|||||++|.|+||+++.+. ...|+|
T Consensus 1 ~~G~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~--------------------------------------~~~~~G 42 (91)
T cd01247 1 TNGVLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEK--------------------------------------SHGCRG 42 (91)
T ss_pred CceEEEEeccccCCCceEEEEEECCEEEEEecCccC--------------------------------------cCCCcE
Confidence 479999999999999999999999999999986531 113789
Q ss_pred eEEccceEEEecCCCCCceEEEeCC-eEEEEEcCCHHHHHHHHHHHHH
Q 003938 164 EIHLKVSSVRASKSDDKRLTIFTGT-KTLHLRCISREDRTVWIDALQA 210 (785)
Q Consensus 164 ~I~L~~~si~~s~~d~~~F~I~t~~-Rt~~L~A~S~edr~~WI~AL~~ 210 (785)
.|+|+.|.+...+.+..+|.|.++. |+|+|+|+|++||++||+||+.
T Consensus 43 ~I~L~~~~i~~~~~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 43 SIFLKKAIIAAHEFDENRFDISVNENVVWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEECcccEEEcCCCCCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHhh
Confidence 9999999998777777899997666 9999999999999999999985
No 6
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.83 E-value=1.4e-20 Score=170.42 Aligned_cols=89 Identities=30% Similarity=0.549 Sum_probs=76.8
Q ss_pred eEEEEEeecC--CCCCceeeEEEEeC--CeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCC
Q 003938 84 VAGILYKWVN--YGKGWRSRWFVLED--GVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (785)
Q Consensus 84 ~~G~L~K~g~--~~K~Wk~RWFVL~~--g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (785)
++|||+|+|+ .+|+||+|||||++ +.|+||+++.+ .
T Consensus 1 l~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d----------------------------------------~ 40 (95)
T cd01265 1 LCGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQD----------------------------------------A 40 (95)
T ss_pred CcccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCc----------------------------------------c
Confidence 4799999986 57999999999974 58999997542 2
Q ss_pred CcceeEEccceEEEecCCC-CCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 003938 160 KPFGEIHLKVSSVRASKSD-DKRLTIFTGTKTLHLRCISREDRTVWIDALQAAK 212 (785)
Q Consensus 160 ~p~G~I~L~~~si~~s~~d-~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~ 212 (785)
+|+|.|+|..+++.....+ +..|.|.|++|+|+|+|+|++||+.||+||+.++
T Consensus 41 ~p~G~I~L~~~~~~~~~~~~~~~F~i~t~~r~y~l~A~s~~e~~~Wi~al~~~~ 94 (95)
T cd01265 41 KPLGRVDLSGAAFTYDPREEKGRFEIHSNNEVIALKASSDKQMNYWLQALQSKR 94 (95)
T ss_pred cccceEECCccEEEcCCCCCCCEEEEEcCCcEEEEECCCHHHHHHHHHHHHhhc
Confidence 4899999999888755444 6789999999999999999999999999999875
No 7
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.81 E-value=3.1e-20 Score=173.11 Aligned_cols=110 Identities=53% Similarity=0.890 Sum_probs=60.4
Q ss_pred eEEEEEeecCC-CCCceeeEEEEe-CCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCc
Q 003938 84 VAGILYKWVNY-GKGWRSRWFVLE-DGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (785)
Q Consensus 84 ~~G~L~K~g~~-~K~Wk~RWFVL~-~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (785)
++|||+||+++ +++||+|||||+ ||+|+|||+..+ ..+++|+|+.+.+.+............ .
T Consensus 1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~------~ 65 (112)
T PF15413_consen 1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRD---------KKDVRIIGEESSRVIRKGDWSISRRSS------R 65 (112)
T ss_dssp EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS----------------------TT-SB-SEEEE---GGG------T
T ss_pred CCceEEEecCCCCcCccccEEEEEeCCEEEEeecccc---------cccccccccchhceEeecccCcccccc------c
Confidence 68999999999 999999999999 999999998332 455677776655444333222221110 0
Q ss_pred ceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003938 162 FGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 162 ~G~I~L~~~si~~s~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
...++.. -.....+.+.|.|+|++|+|||+|+|.+|+.+||+||++|
T Consensus 66 ~~~~~~~---~~~~~~~~~~~~i~T~~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 66 IQGIKDK---NPFGEIHLKVFSIFTPTKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp -EEEES----T--SS-SSEEEEEE-SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred ccccccC---CcccCcCCCCcEEECCCcEEEEEECCHHHHHHHHHHHHhC
Confidence 0111111 0112345577889999999999999999999999999986
No 8
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.80 E-value=3.2e-19 Score=163.82 Aligned_cols=90 Identities=28% Similarity=0.470 Sum_probs=73.7
Q ss_pred eEEEEEeecCC-CCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcc
Q 003938 84 VAGILYKWVNY-GKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (785)
Q Consensus 84 ~~G~L~K~g~~-~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (785)
++|||.|+|+. .|+||+|||||+++.|+||+++.+ ..|.
T Consensus 1 KeG~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d----------------------------------------~~~~ 40 (103)
T cd01251 1 KEGFMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPLD----------------------------------------AFAK 40 (103)
T ss_pred CceeEEecCCCCCCCceeEEEEEeCCEEEEECCCCC----------------------------------------cCcC
Confidence 48999999986 699999999999999999997542 1378
Q ss_pred eeEEccce----EEEecC-----CCC-CceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003938 163 GEIHLKVS----SVRASK-----SDD-KRLTIFTGTKTLHLRCISREDRTVWIDALQAAKD 213 (785)
Q Consensus 163 G~I~L~~~----si~~s~-----~d~-~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~ 213 (785)
|+|.|..+ +|.... .+. ..|.|.|++|||+|+|+|++||.+||+||+.|..
T Consensus 41 G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~t~~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 41 GEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLVTPERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred cEEEeeccccceeEeccCCccccccccceEEEEeCCeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 99999743 343221 111 3799999999999999999999999999999965
No 9
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.79 E-value=7.4e-19 Score=160.49 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=78.6
Q ss_pred cceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCc
Q 003938 82 ASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (785)
Q Consensus 82 ~~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (785)
+.++|||.|+|+..|+|++|||||+++.|+||+++.+ ..+
T Consensus 2 v~k~G~L~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~----------------------------------------~~~ 41 (100)
T cd01233 2 VSKKGYLNFPEETNSGWTRRFVVVRRPYLHIYRSDKD----------------------------------------PVE 41 (100)
T ss_pred cceeEEEEeeCCCCCCcEEEEEEEECCEEEEEccCCC----------------------------------------ccE
Confidence 4689999999999999999999999999999998543 137
Q ss_pred ceeEEccceEEEecCC------CCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 003938 162 FGEIHLKVSSVRASKS------DDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAK 212 (785)
Q Consensus 162 ~G~I~L~~~si~~s~~------d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~ 212 (785)
.|.|.|..+.+..... .++.|.|.++.|+|+|+|+|++||+.||+||+...
T Consensus 42 ~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~t~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 42 RGVINLSTARVEHSEDQAAMVKGPNTFAVCTKHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred eeEEEecccEEEEccchhhhcCCCcEEEEECCCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 8999999887765433 34689999999999999999999999999998764
No 10
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.76 E-value=2.4e-18 Score=156.91 Aligned_cols=90 Identities=24% Similarity=0.364 Sum_probs=75.5
Q ss_pred ceEEEEEeecC---CCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCC
Q 003938 83 SVAGILYKWVN---YGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (785)
Q Consensus 83 ~~~G~L~K~g~---~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (785)
.++|||.|+|+ .+|+||+|||||+++.|+|||.+... .
T Consensus 1 ~~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~---------------------------------------~ 41 (101)
T cd01264 1 LIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKD---------------------------------------D 41 (101)
T ss_pred CcceEEeecCccceeeecceeEEEEEeCCEEEEEeccCcc---------------------------------------C
Confidence 36899999999 89999999999999999999975421 1
Q ss_pred CcceeEEccceEEEecCCC-------CCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003938 160 KPFGEIHLKVSSVRASKSD-------DKRLTIFTGTKTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 160 ~p~G~I~L~~~si~~s~~d-------~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
.+.|.|+|..+..+....+ ++.|.|.|+.|||+|+|+|++++++||++|+.|
T Consensus 42 ~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~tp~rt~~l~A~se~e~e~WI~~i~~a 100 (101)
T cd01264 42 PDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIA 100 (101)
T ss_pred CCCceEEcccceEEeeccccccccccCcEEEEEcCCceEEEEeCCHHHHHHHHHHHHhh
Confidence 1459999998886544222 357899999999999999999999999999987
No 11
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.75 E-value=6.5e-18 Score=155.99 Aligned_cols=91 Identities=24% Similarity=0.280 Sum_probs=73.2
Q ss_pred ceEEEEEeecCCC-----CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhcccccccccccccc
Q 003938 83 SVAGILYKWVNYG-----KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAAR 157 (785)
Q Consensus 83 ~~~G~L~K~g~~~-----K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~ 157 (785)
+++|||+|++..- ++||+|||||+++.|+||+++.+.
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~-------------------------------------- 42 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEK-------------------------------------- 42 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccc--------------------------------------
Confidence 4689999997322 489999999999999999975421
Q ss_pred CCCcceeEEccceEEEecC----------CCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003938 158 QCKPFGEIHLKVSSVRASK----------SDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 158 ~~~p~G~I~L~~~si~~s~----------~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
...|+|+|+|..+...+.. .+...|.|+++.|+|+|.|+|.+||++||+||+.+
T Consensus 43 ~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 43 RGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHDEGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred ccCcceeEECCcceEEEEecCCcCcccccccCccEEEEeCCCeEEEEcCCHHHHHHHHHHHHhC
Confidence 1238899999987655431 12457899999999999999999999999999864
No 12
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.75 E-value=9.1e-18 Score=152.34 Aligned_cols=88 Identities=26% Similarity=0.421 Sum_probs=71.8
Q ss_pred EEEEEeecCCCCCceeeEEEEe--CCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcc
Q 003938 85 AGILYKWVNYGKGWRSRWFVLE--DGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (785)
Q Consensus 85 ~G~L~K~g~~~K~Wk~RWFVL~--~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (785)
+|||.|+|+..|+||+|||||+ ++.|.||+++.+ .+|.
T Consensus 2 ~G~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~----------------------------------------~~~~ 41 (101)
T cd01235 2 EGYLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFED----------------------------------------TAEK 41 (101)
T ss_pred eEEEEEcCCCCCCccceEEEEECCCCEEEEecCCCC----------------------------------------Cccc
Confidence 7999999999999999999998 469999997532 2378
Q ss_pred eeEEccceEEEec-C---------CCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 003938 163 GEIHLKVSSVRAS-K---------SDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAK 212 (785)
Q Consensus 163 G~I~L~~~si~~s-~---------~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~ 212 (785)
|.|+|..+..... . .....|.|.++.|+|+|+|+|.+|+++||.||+.++
T Consensus 42 g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~t~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 42 GCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLKTSKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred eEEEcceeEEEeecCCCCCCCCCCCCceEEEEEeCCceEEEECCCHHHHHHHHHHHHhhC
Confidence 9999997654432 1 112346788999999999999999999999999863
No 13
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.72 E-value=4.2e-17 Score=144.28 Aligned_cols=90 Identities=53% Similarity=0.892 Sum_probs=78.7
Q ss_pred eEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcce
Q 003938 84 VAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFG 163 (785)
Q Consensus 84 ~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G 163 (785)
|+|||+|+++..++|++|||||+++.|+||+++.... ..|.|
T Consensus 1 ~~G~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~--------------------------------------~~~~~ 42 (91)
T cd01246 1 VEGWLLKWTNYLKGWQKRWFVLDNGLLSYYKNKSSMR--------------------------------------GKPRG 42 (91)
T ss_pred CeEEEEEecccCCCceeeEEEEECCEEEEEecCccCC--------------------------------------CCceE
Confidence 6899999998889999999999999999999854310 13789
Q ss_pred eEEccceEEEecCCCCCceEEEeCC-eEEEEEcCCHHHHHHHHHHHHHH
Q 003938 164 EIHLKVSSVRASKSDDKRLTIFTGT-KTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 164 ~I~L~~~si~~s~~d~~~F~I~t~~-Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
.|.|..+.+.....+...|.|.++. ++|+|+|+|.+|+..||.||+.|
T Consensus 43 ~i~l~~~~~~~~~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 43 TILLSGAVISEDDSDDKCFTIDTGGDKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred EEEeceEEEEECCCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence 9999999887766667889999887 99999999999999999999875
No 14
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.72 E-value=3.2e-17 Score=147.98 Aligned_cols=88 Identities=25% Similarity=0.469 Sum_probs=73.0
Q ss_pred eEEEEEeecCCC----CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCC
Q 003938 84 VAGILYKWVNYG----KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (785)
Q Consensus 84 ~~G~L~K~g~~~----K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (785)
++|||+|++..+ |.|++|||||.++.|+||+++.+ .
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~----------------------------------------~ 41 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQD----------------------------------------E 41 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCC----------------------------------------C
Confidence 689999997644 49999999999999999997543 1
Q ss_pred CcceeEEccceEEEecC--CCCCceEEEeCC-eEEEEEcCCHHHHHHHHHHHHHH
Q 003938 160 KPFGEIHLKVSSVRASK--SDDKRLTIFTGT-KTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 160 ~p~G~I~L~~~si~~s~--~d~~~F~I~t~~-Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
.|.|.|.|..+.+.... .....|.|.++. |+|+|+|+|.+|++.||.||+.|
T Consensus 42 ~~~~~I~L~~~~v~~~~~~~k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 42 KAEGLIFLSGFTIESAKEVKKKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred ccceEEEccCCEEEEchhcCCceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 37799999988776442 234468888887 99999999999999999999875
No 15
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.69 E-value=9.5e-17 Score=147.53 Aligned_cols=88 Identities=24% Similarity=0.455 Sum_probs=70.1
Q ss_pred eEEEEEeecC---------CCCCceeeEEEEe-CCeEEEEeecCCCccccCcccCCCceeeccchhhhhhcccccccccc
Q 003938 84 VAGILYKWVN---------YGKGWRSRWFVLE-DGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLG 153 (785)
Q Consensus 84 ~~G~L~K~g~---------~~K~Wk~RWFVL~-~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~ 153 (785)
.+|||+|.+. ..|+||+|||||+ ++.|+||+.+..
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~----------------------------------- 45 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMP----------------------------------- 45 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCC-----------------------------------
Confidence 3799999752 4699999999997 578888875321
Q ss_pred ccccCCCcceeEEccceEEEecCCC----CCceEEEeCCeEEEEEcCCHHHHHHHHHHHHH
Q 003938 154 FAARQCKPFGEIHLKVSSVRASKSD----DKRLTIFTGTKTLHLRCISREDRTVWIDALQA 210 (785)
Q Consensus 154 ~~~~~~~p~G~I~L~~~si~~s~~d----~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~ 210 (785)
..+|+|+|+|..|..+....+ ...|.|.|+.|+|+|.|+|++|++.||++|..
T Consensus 46 ----~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~tp~R~f~l~Aete~E~~~Wi~~l~~ 102 (104)
T cd01236 46 ----TTLPQGTIDMNQCTDVVDAEARTGQKFSICILTPDKEHFIKAETKEEISWWLNMLMV 102 (104)
T ss_pred ----CcccceEEEccceEEEeecccccCCccEEEEECCCceEEEEeCCHHHHHHHHHHHHh
Confidence 234889999998887654322 35689999999999999999999999999964
No 16
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.69 E-value=1.2e-16 Score=142.16 Aligned_cols=86 Identities=38% Similarity=0.644 Sum_probs=75.4
Q ss_pred EEEEee-cCCCCCceeeEEEE--eCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcc
Q 003938 86 GILYKW-VNYGKGWRSRWFVL--EDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (785)
Q Consensus 86 G~L~K~-g~~~K~Wk~RWFVL--~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (785)
|||.|+ .+..|||++||||| .+|+|+||+++.. .+++
T Consensus 1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~----------------------------------------~~~r 40 (89)
T PF15409_consen 1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNS----------------------------------------GKLR 40 (89)
T ss_pred CcceeeccccCCCceeEEEEEEcCCcEEEEEecCCC----------------------------------------CeeE
Confidence 788776 78899999999999 8999999997532 1378
Q ss_pred eeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 003938 163 GEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAK 212 (785)
Q Consensus 163 G~I~L~~~si~~s~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~ 212 (785)
|+|++..+.|... .+.++|.|.+++.+|||+|.|.+|.+.|+.||+.|+
T Consensus 41 Gsi~v~~a~is~~-~~~~~I~idsg~~i~hLKa~s~~~f~~Wv~aL~~a~ 89 (89)
T PF15409_consen 41 GSIDVSLAVISAN-KKSRRIDIDSGDEIWHLKAKSQEDFQRWVSALQKAK 89 (89)
T ss_pred eEEEccceEEEec-CCCCEEEEEcCCeEEEEEcCCHHHHHHHHHHHHhcC
Confidence 9999999988654 477899999999999999999999999999999874
No 17
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.68 E-value=1.6e-16 Score=147.00 Aligned_cols=88 Identities=28% Similarity=0.361 Sum_probs=70.9
Q ss_pred eEEEEEeecCCCC----CceeeEEEEeCCe-------EEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccc
Q 003938 84 VAGILYKWVNYGK----GWRSRWFVLEDGV-------LSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRL 152 (785)
Q Consensus 84 ~~G~L~K~g~~~K----~Wk~RWFVL~~g~-------L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~ 152 (785)
.+|||.|++...+ +||+|||||+++. |.||+++..
T Consensus 1 ~eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~---------------------------------- 46 (108)
T cd01266 1 LEGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRK---------------------------------- 46 (108)
T ss_pred CceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCC----------------------------------
Confidence 3799999998654 9999999999865 699997432
Q ss_pred cccccCCCcceeEEccceEEEecC----CCCC----ceEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003938 153 GFAARQCKPFGEIHLKVSSVRASK----SDDK----RLTIFTGTKTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 153 ~~~~~~~~p~G~I~L~~~si~~s~----~d~~----~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
.+|.|.|.|..+.+.... .... .|.|.++.|+|+|.|+|++||+.||.||+.+
T Consensus 47 ------~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~t~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 47 ------FKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIETIVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred ------CccceEEECCccEEEcccccccccCcccceEEEEEeCCccEEEEECCHHHHHHHHHHHHhh
Confidence 248899999987765331 1222 3889999999999999999999999999754
No 18
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.68 E-value=3.9e-16 Score=148.06 Aligned_cols=92 Identities=25% Similarity=0.458 Sum_probs=75.9
Q ss_pred eEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcce
Q 003938 84 VAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFG 163 (785)
Q Consensus 84 ~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G 163 (785)
++|||+|+++..++|++|||||.++.|+||++..+ ..|.|
T Consensus 2 k~G~L~K~~~~~~~WkkRwfvL~~~~L~yyk~~~~----------------------------------------~~~~g 41 (125)
T cd01252 2 REGWLLKQGGRVKTWKRRWFILTDNCLYYFEYTTD----------------------------------------KEPRG 41 (125)
T ss_pred cEEEEEEeCCCCCCeEeEEEEEECCEEEEEcCCCC----------------------------------------CCceE
Confidence 68999999999999999999999999999997432 23789
Q ss_pred eEEccceEEEecCC--CCCceEEEeCC---------------------eEEEEEcCCHHHHHHHHHHHHHHHHHc
Q 003938 164 EIHLKVSSVRASKS--DDKRLTIFTGT---------------------KTLHLRCISREDRTVWIDALQAAKDLF 215 (785)
Q Consensus 164 ~I~L~~~si~~s~~--d~~~F~I~t~~---------------------Rt~~L~A~S~edr~~WI~AL~~a~~~~ 215 (785)
.|+|..+.|..... ....|.|.+++ ++|+|+|+|.+|++.||.||+.+...-
T Consensus 42 ~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~ 116 (125)
T cd01252 42 IIPLENVSIREVEDPSKPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPN 116 (125)
T ss_pred EEECCCcEEEEcccCCCCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcC
Confidence 99999888765533 33457776543 689999999999999999999997653
No 19
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.67 E-value=3.9e-16 Score=142.87 Aligned_cols=90 Identities=21% Similarity=0.321 Sum_probs=73.0
Q ss_pred cceEEEEEeecCCCCCceeeEEEEeCC------eEEEEeecCCCccccCcccCCCceeeccchhhhhhcccccccccccc
Q 003938 82 ASVAGILYKWVNYGKGWRSRWFVLEDG------VLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFA 155 (785)
Q Consensus 82 ~~~~G~L~K~g~~~K~Wk~RWFVL~~g------~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~ 155 (785)
+.++|||.|+ |.||+|||||+++ .|.||+++..-.
T Consensus 2 v~k~GyL~K~----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~----------------------------------- 42 (101)
T cd01257 2 VRKSGYLRKQ----KSMHKRFFVLRAESSGGPARLEYYENEKKFL----------------------------------- 42 (101)
T ss_pred ccEEEEEeEe----cCcEeEEEEEecCCCCCCceEEEECChhhcc-----------------------------------
Confidence 5789999998 8999999999887 899999854200
Q ss_pred ccCCCcceeEEccceEEEecCCCC---CceEEEeCCeEEEEEcCCHHHHHHHHHHHHH
Q 003938 156 ARQCKPFGEIHLKVSSVRASKSDD---KRLTIFTGTKTLHLRCISREDRTVWIDALQA 210 (785)
Q Consensus 156 ~~~~~p~G~I~L~~~si~~s~~d~---~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~ 210 (785)
.....|.|+|+|..|..+....+. ..|.|.|+.|+|+|.|+|++|++.||+||..
T Consensus 43 ~~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~t~dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 43 QKGSAPKRVIPLESCFNINKRADAKHRHLIALYTRDEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred ccCCCceEEEEccceEEEeeccccccCeEEEEEeCCceEEEEeCCHHHHHHHHHHHhh
Confidence 011459999999999866443332 4678999999999999999999999999964
No 20
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.64 E-value=1e-15 Score=136.16 Aligned_cols=90 Identities=33% Similarity=0.555 Sum_probs=73.6
Q ss_pred eEEEEEeecCC-CCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcc
Q 003938 84 VAGILYKWVNY-GKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (785)
Q Consensus 84 ~~G~L~K~g~~-~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (785)
++|||.|++.. .++|++|||||.++.|.||++.... ...+.
T Consensus 1 k~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~--------------------------------------~~~~~ 42 (94)
T cd01250 1 KQGYLYKRSSKSNKEWKKRWFVLKNGQLTYHHRLKDY--------------------------------------DNAHV 42 (94)
T ss_pred CcceEEEECCCcCCCceEEEEEEeCCeEEEEcCCccc--------------------------------------ccccc
Confidence 58999999865 7899999999999999999975321 11266
Q ss_pred eeEEccceEEEecCC---CCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003938 163 GEIHLKVSSVRASKS---DDKRLTIFTGTKTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 163 G~I~L~~~si~~s~~---d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
+.|.|..+++..... ....|.|.++.|+|+|+|+|.++++.||.||+.+
T Consensus 43 ~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~f~a~s~~~~~~Wi~al~~~ 94 (94)
T cd01250 43 KEIDLRRCTVRHNGKQPDRRFCFEVISPTKTWHFQADSEEERDDWISAIQES 94 (94)
T ss_pred eEEeccceEEecCccccCCceEEEEEcCCcEEEEECCCHHHHHHHHHHHhcC
Confidence 889998777664433 2457889999999999999999999999999863
No 21
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.63 E-value=1.8e-15 Score=138.80 Aligned_cols=93 Identities=27% Similarity=0.408 Sum_probs=68.0
Q ss_pred cceEEEEEeecCCCCCceeeEEEEe-CCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCC
Q 003938 82 ASVAGILYKWVNYGKGWRSRWFVLE-DGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCK 160 (785)
Q Consensus 82 ~~~~G~L~K~g~~~K~Wk~RWFVL~-~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (785)
+.++|||.|+|+..|+||+|||||+ ++.|.||+.+..+. . ....
T Consensus 1 v~k~G~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~-~----------------------------------~~~i 45 (102)
T cd01241 1 VVKEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDG-D----------------------------------PFLP 45 (102)
T ss_pred CcEEEEEEeecCCCCCCeeEEEEEeCCCeEEEEecCCCcc-C----------------------------------cccc
Confidence 3689999999999999999999998 78999999754211 0 0112
Q ss_pred cceeEEccceEEEec-CCCCCceEEE------eCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003938 161 PFGEIHLKVSSVRAS-KSDDKRLTIF------TGTKTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 161 p~G~I~L~~~si~~s-~~d~~~F~I~------t~~Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
+.+.+.+..|.+... ......|.|. +..|+| .|+|++||+.||+||+.+
T Consensus 46 ~l~~~~v~~~~~~~~~~~~~~~F~i~~~~~~~~~~r~f--~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 46 PLNNFSVAECQLMKTERPRPNTFIIRCLQWTTVIERTF--HVESPEEREEWIHAIQTV 101 (102)
T ss_pred ccCCeEEeeeeeeeccCCCcceEEEEeccCCcccCEEE--EeCCHHHHHHHHHHHHhh
Confidence 445556666655422 2334578886 345766 489999999999999987
No 22
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.55 E-value=1.5e-14 Score=131.58 Aligned_cols=85 Identities=26% Similarity=0.304 Sum_probs=71.8
Q ss_pred EEEEEeecCC-CCCceeeEEEEeC----CeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCC
Q 003938 85 AGILYKWVNY-GKGWRSRWFVLED----GVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (785)
Q Consensus 85 ~G~L~K~g~~-~K~Wk~RWFVL~~----g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (785)
.|||.|+|+. .|.||+|||+|.+ +.|+||+.+.+ .
T Consensus 2 ~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~----------------------------------------~ 41 (98)
T cd01245 2 KGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKK----------------------------------------T 41 (98)
T ss_pred CCccccCCCCcccccceeEEEEecCCCCceEEEEcCCCC----------------------------------------C
Confidence 5999999988 8999999999986 99999997543 2
Q ss_pred CcceeEEccceEEEecCC----CCCceEEEeCCe--EEEEEcCCHHHHHHHHHHHHH
Q 003938 160 KPFGEIHLKVSSVRASKS----DDKRLTIFTGTK--TLHLRCISREDRTVWIDALQA 210 (785)
Q Consensus 160 ~p~G~I~L~~~si~~s~~----d~~~F~I~t~~R--t~~L~A~S~edr~~WI~AL~~ 210 (785)
+|+|.|+|..+.|..... .+..|.|.++.+ +|+++|++ +||++||++|+.
T Consensus 42 ~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 42 KPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CccceeeccccEEEEccccccCCCeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 388999999998876433 235688988875 99999999 999999999985
No 23
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.52 E-value=5.7e-14 Score=127.95 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=66.8
Q ss_pred EEEEeec----CCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCc
Q 003938 86 GILYKWV----NYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (785)
Q Consensus 86 G~L~K~g----~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (785)
|.|.|+. -..++||+|||+|+++.|+||++.. ..|
T Consensus 5 ~~~~kr~~~~~~~~~n~KkRwF~Lt~~~L~Y~k~~~-----------------------------------------~~~ 43 (98)
T cd01244 5 LQQVDRSRLAWKKVLHFKKRYFQLTTTHLSWAKDVQ-----------------------------------------CKK 43 (98)
T ss_pred cEEEEcccCCCccCcCCceeEEEECCCEEEEECCCC-----------------------------------------Cce
Confidence 4556653 1237899999999999999999632 238
Q ss_pred ceeEEccceEEEecCC-----CCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003938 162 FGEIHLKVSSVRASKS-----DDKRLTIFTGTKTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 162 ~G~I~L~~~si~~s~~-----d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
.|+|+|.....++... ....|.|+++.|+|+|.|+|.+||++||.||+.+
T Consensus 44 ~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~~r~~yi~a~s~~E~~~Wi~al~k~ 98 (98)
T cd01244 44 SALIKLAAIKGTEPLSDKSFVNVDIITIVCEDDTMQLQFEAPVEATDWLNALEKQ 98 (98)
T ss_pred eeeEEccceEEEEEcCCcccCCCceEEEEeCCCeEEEECCCHHHHHHHHHHHhcC
Confidence 8999998776554321 1246899999999999999999999999999864
No 24
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.52 E-value=1.7e-13 Score=121.93 Aligned_cols=93 Identities=34% Similarity=0.494 Sum_probs=78.5
Q ss_pred ceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcc
Q 003938 83 SVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (785)
Q Consensus 83 ~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (785)
.++|||.|++...+.|++|||||.++.|.||++... .....+.
T Consensus 2 ~~~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~~-------------------------------------~~~~~~~ 44 (104)
T PF00169_consen 2 IKEGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSKD-------------------------------------KSDSKPK 44 (104)
T ss_dssp EEEEEEEEEESSSSSEEEEEEEEETTEEEEESSTTT-------------------------------------TTESSES
T ss_pred EEEEEEEEECCCCCCeEEEEEEEECCEEEEEecCcc-------------------------------------ccceeee
Confidence 589999999988899999999999999999998542 0123488
Q ss_pred eeEEccceEEEecCC--------CCCceEEEeCCe-EEEEEcCCHHHHHHHHHHHHHHH
Q 003938 163 GEIHLKVSSVRASKS--------DDKRLTIFTGTK-TLHLRCISREDRTVWIDALQAAK 212 (785)
Q Consensus 163 G~I~L~~~si~~s~~--------d~~~F~I~t~~R-t~~L~A~S~edr~~WI~AL~~a~ 212 (785)
+.|.|..+.+..... ....|.|.++.+ +|+|+|+|.+++..||+||+.|.
T Consensus 45 ~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 45 GSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp EEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EEEEecCceEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 999999998876533 345688988875 99999999999999999999985
No 25
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.50 E-value=2e-15 Score=159.82 Aligned_cols=173 Identities=18% Similarity=0.212 Sum_probs=119.4
Q ss_pred CCcceEEEEEeecCCCCCceeeEEEE-eCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccC
Q 003938 80 VSASVAGILYKWVNYGKGWRSRWFVL-EDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQ 158 (785)
Q Consensus 80 ~~~~~~G~L~K~g~~~K~Wk~RWFVL-~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~ 158 (785)
+.++++|||+|+|.++|+||+|||+| .||.|.-|+++..+. . ..
T Consensus 13 ~~vvkEgWlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~-~----------------------------------~~ 57 (516)
T KOG0690|consen 13 EDVVKEGWLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEV-Q----------------------------------PT 57 (516)
T ss_pred hhhHHhhhHhhcchhhhcccceEEEEeeCCceEeeccCCccC-C----------------------------------CC
Confidence 45689999999999999999999999 679999999865421 1 11
Q ss_pred CCcceeEEccceEEEec-CCCCCceEEEeC------CeEEEEEcCCHHHHHHHHHHHHHHHHHccccc----cCCC--CC
Q 003938 159 CKPFGEIHLKVSSVRAS-KSDDKRLTIFTG------TKTLHLRCISREDRTVWIDALQAAKDLFPRLL----TSTD--FS 225 (785)
Q Consensus 159 ~~p~G~I~L~~~si~~s-~~d~~~F~I~t~------~Rt~~L~A~S~edr~~WI~AL~~a~~~~~~~~----~~~~--~~ 225 (785)
..|...+.++.|.+... +..++.|.|.+- .|||| ++|.++|+.|++|||++....++.- +... ..
T Consensus 58 p~pLNnF~v~~cq~m~~erPrPntFiiRcLQWTTVIERTF~--ves~~eRq~W~~AIq~vsn~l~q~e~~~tn~~p~~~~ 135 (516)
T KOG0690|consen 58 PEPLNNFMVRDCQTMKTERPRPNTFIIRCLQWTTVIERTFY--VESAEERQEWIEAIQAVSNRLKQEELMDTNGNPEGEM 135 (516)
T ss_pred cccccchhhhhhhhhhccCCCCceEEEEeeeeeeeeeeeee--cCCHHHHHHHHHHHHHHhhhhhhhhhcccCCCccccc
Confidence 12556666666665433 455677877653 48888 7999999999999999987765421 1111 11
Q ss_pred CCcccccchHHHHHHHhhcccchhhHHHHHHHHhhhhhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Q 003938 226 PSEDVVVSTERLRLRLLQEGVGDSVIKDCESIMLSEHSDLQ-------NQLNALQRKHIMLLGTLRQLETEKM 291 (785)
Q Consensus 226 ~~~~~~~s~e~lr~rL~e~~~~e~~ik~~e~i~~~e~s~l~-------~~l~~l~~~~~~ll~~l~~Le~ek~ 291 (785)
..+..+.++.-...-+.-.+..++ +.-..+.+++|..|+ ++++++++|....+++++.|.+|.|
T Consensus 136 d~~~~s~s~d~~~e~m~i~~t~~~--~~~~kvTm~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKevi 206 (516)
T KOG0690|consen 136 DVNMGSPSDDFGSEEMSIAETEEA--KRKNKVTMEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVI 206 (516)
T ss_pred cccCCCCCccccceeeeecccccc--cccceeccchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhhe
Confidence 112233333222233333333322 222478889999988 8999999999999999999987765
No 26
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.48 E-value=3.4e-13 Score=123.52 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=79.3
Q ss_pred ceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcc
Q 003938 83 SVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (785)
Q Consensus 83 ~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (785)
+++|||.|.+...++||+|||+|-++.|.|++.+... .....+.+
T Consensus 3 ikeG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~-----------------------------------~~~~y~~~ 47 (101)
T cd01219 3 LKEGSVLKISSTTEKTEERYLFLFNDLLLYCVPRKMI-----------------------------------GGSKFKVR 47 (101)
T ss_pred ccceEEEEEecCCCCceeEEEEEeCCEEEEEEccccc-----------------------------------CCCcEEEE
Confidence 6799999999999999999999999999999964210 00122367
Q ss_pred eeEEccceEEEecC--CCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003938 163 GEIHLKVSSVRASK--SDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKD 213 (785)
Q Consensus 163 G~I~L~~~si~~s~--~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~ 213 (785)
+.|+|....|.... ...+.|.|.+..|+|+|.|+|++||.+||+||+.|++
T Consensus 48 ~~i~l~~~~v~~~~~~~~~~~F~I~~~~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 48 ARIDVSGMQVCEGDNLERPHSFLVSGKQRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred EEEecccEEEEeCCCCCcCceEEEecCCcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 89999988887542 2457899999999999999999999999999999975
No 27
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.42 E-value=6.7e-13 Score=125.39 Aligned_cols=92 Identities=21% Similarity=0.408 Sum_probs=68.7
Q ss_pred ceEEEEEe-e-cCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCC
Q 003938 83 SVAGILYK-W-VNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCK 160 (785)
Q Consensus 83 ~~~G~L~K-~-g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (785)
...|||.- + .+.+|.|++|||||+++.|+||+...+. ....
T Consensus 2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~-------------------------------------~~~~ 44 (122)
T cd01263 2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDE-------------------------------------KRKG 44 (122)
T ss_pred ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCcc-------------------------------------ccCC
Confidence 35799984 3 5678999999999999999999964431 1234
Q ss_pred cceeEEccceEEEec-------CCCCCceEEEe--CC-----------------eE-EEEEcCCHHHHHHHHHHHHHH
Q 003938 161 PFGEIHLKVSSVRAS-------KSDDKRLTIFT--GT-----------------KT-LHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 161 p~G~I~L~~~si~~s-------~~d~~~F~I~t--~~-----------------Rt-~~L~A~S~edr~~WI~AL~~a 211 (785)
|.|.|+|..|.+... ....+.|.|.+ ++ |+ +.|.|+|.+||+.||.||+.|
T Consensus 45 Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 45 PTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred ceEEEEhhhCcccccccCChhhcCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 899999999887543 23345677632 21 44 458999999999999999864
No 28
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.37 E-value=2e-12 Score=118.30 Aligned_cols=80 Identities=26% Similarity=0.556 Sum_probs=63.9
Q ss_pred CCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcceeEEccceEEEe
Q 003938 95 GKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVRA 174 (785)
Q Consensus 95 ~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G~I~L~~~si~~ 174 (785)
.|+||+|||+|+|+.|+|||++++. ...|.+.|.|.+|.|..
T Consensus 17 ~K~~KrrwF~lk~~~L~YyK~kee~--------------------------------------~~~p~i~lnl~gcev~~ 58 (106)
T cd01237 17 LKGYKQYWFTFRDTSISYYKSKEDS--------------------------------------NGAPIGQLNLKGCEVTP 58 (106)
T ss_pred hhhheeEEEEEeCCEEEEEccchhc--------------------------------------CCCCeEEEecCceEEcc
Confidence 6899999999999999999986531 12377888999999875
Q ss_pred cC-CCCCceE--EEeCC----eEEEEEcCCHHHHHHHHHHHHHHH
Q 003938 175 SK-SDDKRLT--IFTGT----KTLHLRCISREDRTVWIDALQAAK 212 (785)
Q Consensus 175 s~-~d~~~F~--I~t~~----Rt~~L~A~S~edr~~WI~AL~~a~ 212 (785)
.. .....|. +.++. |+|+|+|+|+++++.||.|++.|.
T Consensus 59 dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rlas 103 (106)
T cd01237 59 DVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLAS 103 (106)
T ss_pred cccccccceEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHhh
Confidence 43 1234566 45554 999999999999999999999884
No 29
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2.7e-12 Score=133.03 Aligned_cols=96 Identities=26% Similarity=0.490 Sum_probs=75.8
Q ss_pred CcceEEEEEeecC-CCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCC
Q 003938 81 SASVAGILYKWVN-YGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (785)
Q Consensus 81 ~~~~~G~L~K~g~-~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (785)
....+|||.|+|+ ..|.||+|||+|.+++|+||.-..+ .
T Consensus 259 npdREGWLlKlgg~rvktWKrRWFiLtdNCLYYFe~tTD----------------------------------------K 298 (395)
T KOG0930|consen 259 NPDREGWLLKLGGNRVKTWKRRWFILTDNCLYYFEYTTD----------------------------------------K 298 (395)
T ss_pred CccccceeeeecCCcccchhheeEEeecceeeeeeeccC----------------------------------------C
Confidence 4568999999986 7799999999999999999986332 2
Q ss_pred CcceeEEccceEEEecCCCCCc--eEEEeC----------------------CeEEEEEcCCHHHHHHHHHHHHHHHHHc
Q 003938 160 KPFGEIHLKVSSVRASKSDDKR--LTIFTG----------------------TKTLHLRCISREDRTVWIDALQAAKDLF 215 (785)
Q Consensus 160 ~p~G~I~L~~~si~~s~~d~~~--F~I~t~----------------------~Rt~~L~A~S~edr~~WI~AL~~a~~~~ 215 (785)
.|+|.|.|..-+|+......+. |.|+.+ .-.|.++|.|.+|+..||++|++++..-
T Consensus 299 EPrGIIpLeNlsir~VedP~kP~cfEly~ps~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~ 378 (395)
T KOG0930|consen 299 EPRGIIPLENLSIREVEDPKKPNCFELYIPSNKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRD 378 (395)
T ss_pred CCCcceeccccceeeccCCCCCCeEEEecCCCCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccC
Confidence 3889999998888866444333 444321 2469999999999999999999998764
Q ss_pred c
Q 003938 216 P 216 (785)
Q Consensus 216 ~ 216 (785)
|
T Consensus 379 P 379 (395)
T KOG0930|consen 379 P 379 (395)
T ss_pred c
Confidence 4
No 30
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.32 E-value=5.6e-12 Score=119.29 Aligned_cols=75 Identities=23% Similarity=0.536 Sum_probs=56.7
Q ss_pred CceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcceeEEccceE-EEec
Q 003938 97 GWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSS-VRAS 175 (785)
Q Consensus 97 ~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G~I~L~~~s-i~~s 175 (785)
+|++|||||+++.|.||++... .++.|+|.+.... |...
T Consensus 32 ~w~kRWFvlr~s~L~Y~~~~~~----------------------------------------~~~~~vil~D~~f~v~~~ 71 (121)
T cd01254 32 RWQKRWFIVKESFLAYMDDPSS----------------------------------------AQILDVILFDVDFKVNGG 71 (121)
T ss_pred CCcceeEEEeCCEEEEEcCCCC----------------------------------------CceeeEEEEcCCccEEeC
Confidence 6999999999999999997432 1255666654322 2111
Q ss_pred --------------CCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003938 176 --------------KSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 176 --------------~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
......|.|.|++|+|.|.|+|..++++||+||+.|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~i~t~~R~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 72 GKEDISLAVELKDITGLRHGLKITNSNRSLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred CcccccccccccccCCCceEEEEEcCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 122346889999999999999999999999999875
No 31
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.29 E-value=4.3e-11 Score=104.42 Aligned_cols=93 Identities=34% Similarity=0.548 Sum_probs=76.7
Q ss_pred ceEEEEEeecC-CCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCc
Q 003938 83 SVAGILYKWVN-YGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (785)
Q Consensus 83 ~~~G~L~K~g~-~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (785)
.++|||++++. ....|++|||+|.++.|.||+..... ....+
T Consensus 2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~-------------------------------------~~~~~ 44 (102)
T smart00233 2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKAK-------------------------------------KDYKP 44 (102)
T ss_pred ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCcc-------------------------------------ccCCC
Confidence 57999999987 66789999999999999999975321 01236
Q ss_pred ceeEEccceEEEecCC-----CCCceEEEeCCe-EEEEEcCCHHHHHHHHHHHHHHH
Q 003938 162 FGEIHLKVSSVRASKS-----DDKRLTIFTGTK-TLHLRCISREDRTVWIDALQAAK 212 (785)
Q Consensus 162 ~G~I~L~~~si~~s~~-----d~~~F~I~t~~R-t~~L~A~S~edr~~WI~AL~~a~ 212 (785)
.+.|.|..+.+..... ....|.|.++.+ +|+|+|+|.++++.|+.+|+.+.
T Consensus 45 ~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 45 KGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ceEEECCcCEEEeCCCCccCCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 7899999988776543 356788988887 99999999999999999999875
No 32
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.24 E-value=4.5e-11 Score=109.54 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=64.3
Q ss_pred eEEEEE-eec-------CCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhcccccccccccc
Q 003938 84 VAGILY-KWV-------NYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFA 155 (785)
Q Consensus 84 ~~G~L~-K~g-------~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~ 155 (785)
++|+|. |+. ...+.|++|||||+++.|+||+++......
T Consensus 1 ~~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~--------------------------------- 47 (104)
T cd01253 1 MEGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAEN--------------------------------- 47 (104)
T ss_pred CCceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccC---------------------------------
Confidence 478887 432 235789999999999999999975421000
Q ss_pred ccCCCcceeEEccceEEEecC---CCCCceEEE-eCCeEEEEEcCCHHHHHHHHHHHHHH
Q 003938 156 ARQCKPFGEIHLKVSSVRASK---SDDKRLTIF-TGTKTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 156 ~~~~~p~G~I~L~~~si~~s~---~d~~~F~I~-t~~Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
. .....|+|..+.+.... .....|.|. +++++|+|+|+|.++++.||.||+++
T Consensus 48 -~--~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~~ 104 (104)
T cd01253 48 -V--HGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDGAEFLFQAPDEEEMSSWVRALKSA 104 (104)
T ss_pred -C--CCCCcEeccCCEEEecCCcccCceEEEEEecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 0 01125677666554432 234568885 45699999999999999999999864
No 33
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.12 E-value=3e-10 Score=98.19 Aligned_cols=91 Identities=40% Similarity=0.618 Sum_probs=74.4
Q ss_pred eEEEEEeecCCC-CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcc
Q 003938 84 VAGILYKWVNYG-KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (785)
Q Consensus 84 ~~G~L~K~g~~~-K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (785)
++|||+++.... ..|++|||+|.++.|.||+...... ...+.
T Consensus 1 ~~G~l~~~~~~~~~~w~~~~~~L~~~~l~~~~~~~~~~-------------------------------------~~~~~ 43 (96)
T cd00821 1 KEGYLLKKTGKLRKGWKRRWFVLFNDLLLYYKKKSSKK-------------------------------------SYKPK 43 (96)
T ss_pred CcchhhhhhChhhCCccEEEEEEECCEEEEEECCCCCc-------------------------------------CCCCc
Confidence 479999988665 7899999999999999999643210 12377
Q ss_pred eeEEccceEEEecCCC---CCceEEEeCC-eEEEEEcCCHHHHHHHHHHHHHH
Q 003938 163 GEIHLKVSSVRASKSD---DKRLTIFTGT-KTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 163 G~I~L~~~si~~s~~d---~~~F~I~t~~-Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
+.|.|..+.+...... ...|.|.+.. +.|+|+|+|.+|+..|+.+|+.|
T Consensus 44 ~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~~ 96 (96)
T cd00821 44 GSIPLSGAEVEESPDDSGRKNCFEIRTPDGRSYLLQAESEEEREEWIEALQSA 96 (96)
T ss_pred ceEEcCCCEEEECCCcCCCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhcC
Confidence 9999999888766443 5789998877 99999999999999999999864
No 34
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=99.11 E-value=2.5e-10 Score=125.79 Aligned_cols=97 Identities=34% Similarity=0.554 Sum_probs=87.7
Q ss_pred CCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCC
Q 003938 80 VSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (785)
Q Consensus 80 ~~~~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (785)
...-++|+|.||+||+.+|+.|||||.+|.|+||++... ...
T Consensus 22 gw~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E--------------------------------------~~h 63 (611)
T KOG1739|consen 22 GWVERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDE--------------------------------------TEH 63 (611)
T ss_pred CchhhcceeeeeecccccccceEEEEcccchhhhhhhhh--------------------------------------hhc
Confidence 345689999999999999999999999999999998543 222
Q ss_pred CcceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003938 160 KPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDL 214 (785)
Q Consensus 160 ~p~G~I~L~~~si~~s~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~ 214 (785)
.++|.|.|+.+.|.....|.++|.|.++.-..+|+|.+...++.|+++|+-.+..
T Consensus 64 GcRgsi~l~ka~i~ahEfDe~rfdIsvn~nv~~lra~~~~hr~~w~d~L~wmk~e 118 (611)
T KOG1739|consen 64 GCRGSICLSKAVITAHEFDECRFDISVNDNVWYLRAQDPDHRQQWIDALEWMKTE 118 (611)
T ss_pred ccceeeEeccCCcccccchhheeeeEeccceeeehhcCcHHHHHHHHHHHHHhhc
Confidence 3889999999999999999999999999999999999999999999999998873
No 35
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.09 E-value=1e-09 Score=100.41 Aligned_cols=93 Identities=23% Similarity=0.343 Sum_probs=69.0
Q ss_pred ceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcc
Q 003938 83 SVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (785)
Q Consensus 83 ~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (785)
+.+|+|.|.... +-++|+|.|=++.|.|+.....+ ...-+++
T Consensus 3 ikEG~L~K~~~k--~~~~R~~FLFnD~LlY~~~~~~~------------------------------------~~~y~~~ 44 (99)
T cd01220 3 IRQGCLLKLSKK--GLQQRMFFLFSDLLLYTSKSPTD------------------------------------QNSFRIL 44 (99)
T ss_pred eeEEEEEEEeCC--CCceEEEEEccceEEEEEeecCC------------------------------------CceEEEE
Confidence 579999998763 34445666655577777642110 0112367
Q ss_pred eeEEccceEEEecCC---CCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003938 163 GEIHLKVSSVRASKS---DDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKD 213 (785)
Q Consensus 163 G~I~L~~~si~~s~~---d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~ 213 (785)
|.|+|....|..... ..+.|.|.++.|+|.|.|.|++|+++||++|+.|++
T Consensus 45 ~~i~L~~~~V~~~~~~~~~~~~F~I~~~~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 45 GHLPLRGMLTEESEHEWGVPHCFTIFGGQCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred EEEEcCceEEeeccCCcCCceeEEEEcCCeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 999999988875543 247899999999999999999999999999999975
No 36
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=99.03 E-value=9.3e-11 Score=136.75 Aligned_cols=95 Identities=26% Similarity=0.409 Sum_probs=77.1
Q ss_pred CCCCcceEEEEEeecCCCCCceeeEEEEeC--CeEEEEeecCCCccccCcccCCCceeeccchhhhhhcccccccccccc
Q 003938 78 GGVSASVAGILYKWVNYGKGWRSRWFVLED--GVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFA 155 (785)
Q Consensus 78 ~~~~~~~~G~L~K~g~~~K~Wk~RWFVL~~--g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~ 155 (785)
+....+-+|+|||+|...|+|++|||||+. ..|.||....+
T Consensus 1630 ~teNr~~eG~LyKrGA~lK~Wk~RwFVLd~~khqlrYYd~~ed------------------------------------- 1672 (1732)
T KOG1090|consen 1630 PTENRIPEGYLYKRGAKLKLWKPRWFVLDPDKHQLRYYDDFED------------------------------------- 1672 (1732)
T ss_pred cccccCcccchhhcchhhcccccceeEecCCccceeeeccccc-------------------------------------
Confidence 356778899999999999999999999965 89999997543
Q ss_pred ccCCCcceeEEccceE-E---EecCCCCCc-eEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 003938 156 ARQCKPFGEIHLKVSS-V---RASKSDDKR-LTIFTGTKTLHLRCISREDRTVWIDALQAAK 212 (785)
Q Consensus 156 ~~~~~p~G~I~L~~~s-i---~~s~~d~~~-F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~ 212 (785)
.+|+|.|+|.... + .....|.+. |.+.|..|+|.|+|.+.-..++|++.||++.
T Consensus 1673 ---t~pkG~IdLaevesv~~~~~k~vdekgffdlktt~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1673 ---TKPKGCIDLAEVESVALIGPKTVDEKGFFDLKTTNRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred ---ccccchhhhhhhhhhcccCccccCccceeeeehhhHHHHHHhccchHHHHHHHHHHHhh
Confidence 3488999986322 2 223445555 5699999999999999999999999999874
No 37
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=99.00 E-value=3.9e-09 Score=91.86 Aligned_cols=87 Identities=32% Similarity=0.492 Sum_probs=68.8
Q ss_pred EEEEEeecCCC----CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCC
Q 003938 85 AGILYKWVNYG----KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCK 160 (785)
Q Consensus 85 ~G~L~K~g~~~----K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (785)
+|||.+++... +.|++|||+|.++.|.||+......
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~---------------------------------------- 41 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKE---------------------------------------- 41 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCc----------------------------------------
Confidence 69999998664 7899999999999999999754311
Q ss_pred cc-eeEEccceEEEecCC---CCCceEEEeC---CeEEEEEcCCHHHHHHHHHHHHHH
Q 003938 161 PF-GEIHLKVSSVRASKS---DDKRLTIFTG---TKTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 161 p~-G~I~L~~~si~~s~~---d~~~F~I~t~---~Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
.. +.+.+....+..... .+..|.|.+. .+.++|+|+|.++++.||.||+.|
T Consensus 42 ~~~~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 42 IKPGSIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred CCCCEEEccceEEEECCCCCCCCceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHhcC
Confidence 11 567777666544432 3578999887 899999999999999999999864
No 38
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.91 E-value=1.3e-08 Score=95.83 Aligned_cols=88 Identities=13% Similarity=0.195 Sum_probs=63.8
Q ss_pred CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcceeEEccceEEEec
Q 003938 96 KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVRAS 175 (785)
Q Consensus 96 K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G~I~L~~~si~~s 175 (785)
+.|++||+||+++.|+.||++....... ........|.|..+.....
T Consensus 24 R~Wk~~y~vL~g~~L~~yKDe~~~~~~~---------------------------------~~~~~~~~Isi~~a~~~ia 70 (117)
T cd01230 24 RSWKMFYGILRGLVLYLQKDEHKPGKSL---------------------------------SETELKNAISIHHALATRA 70 (117)
T ss_pred CcceEEEEEEECCEEEEEccCccccccc---------------------------------ccccccceEEeccceeEee
Confidence 5799999999999999999864211000 0001234566766663333
Q ss_pred ---CCCCCceEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHHHcc
Q 003938 176 ---KSDDKRLTIFTG-TKTLHLRCISREDRTVWIDALQAAKDLFP 216 (785)
Q Consensus 176 ---~~d~~~F~I~t~-~Rt~~L~A~S~edr~~WI~AL~~a~~~~~ 216 (785)
......|.|.++ ++.|.|+|.+.+||+.||.+|+.|.+.++
T Consensus 71 ~dy~Kr~~VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~~~s 115 (117)
T cd01230 71 SDYSKKPHVFRLRTADWREFLFQTSSLKELQSWIERINVVAAAFS 115 (117)
T ss_pred ccccCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHHhcc
Confidence 233456889887 49999999999999999999999998764
No 39
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.84 E-value=1.7e-08 Score=93.04 Aligned_cols=93 Identities=22% Similarity=0.212 Sum_probs=69.4
Q ss_pred CCCCcceEEEEEeecCCCCCceeeEEEEeCC-eEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccc
Q 003938 78 GGVSASVAGILYKWVNYGKGWRSRWFVLEDG-VLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAA 156 (785)
Q Consensus 78 ~~~~~~~~G~L~K~g~~~K~Wk~RWFVL~~g-~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~ 156 (785)
+|....++|+|.|+.+.+ +|+|||+|.++ .|.|+.....
T Consensus 9 ~ge~Il~~g~v~K~kgl~--~kkR~liLTd~PrL~Yvdp~~~-------------------------------------- 48 (104)
T PF14593_consen 9 PGELILKQGYVKKRKGLF--AKKRQLILTDGPRLFYVDPKKM-------------------------------------- 48 (104)
T ss_dssp -T--EEEEEEEEEEETTE--EEEEEEEEETTTEEEEEETTTT--------------------------------------
T ss_pred CCCeEEEEEEEEEeeceE--EEEEEEEEccCCEEEEEECCCC--------------------------------------
Confidence 367789999999998887 99999999997 9999885321
Q ss_pred cCCCcceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHc
Q 003938 157 RQCKPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLF 215 (785)
Q Consensus 157 ~~~~p~G~I~L~~~si~~s~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~~ 215 (785)
..+|+|.+....-.+ ..+.+.|.|+|++|+|+|.. ...+...|++||+.++..+
T Consensus 49 ---~~KGeI~~~~~l~v~-~k~~~~F~I~tp~RtY~l~d-~~~~A~~W~~~I~~~~~~~ 102 (104)
T PF14593_consen 49 ---VLKGEIPWSKELSVE-VKSFKTFFIHTPKRTYYLED-PEGNAQQWVEAIEEVKKQY 102 (104)
T ss_dssp ---EEEEEE--STT-EEE-ECSSSEEEEEETTEEEEEE--TTS-HHHHHHHHHHHHHHH
T ss_pred ---eECcEEecCCceEEE-EccCCEEEEECCCcEEEEEC-CCCCHHHHHHHHHHHHHHh
Confidence 156999998554333 35567999999999999977 4566888999999998753
No 40
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.67 E-value=3.1e-08 Score=89.55 Aligned_cols=90 Identities=22% Similarity=0.385 Sum_probs=64.1
Q ss_pred ceEEEEEeecC-CCCCceeeEEEEeCC-----eEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccc
Q 003938 83 SVAGILYKWVN-YGKGWRSRWFVLEDG-----VLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAA 156 (785)
Q Consensus 83 ~~~G~L~K~g~-~~K~Wk~RWFVL~~g-----~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~ 156 (785)
..+|||+|.|+ .+|.||+|||||.+- .|.=|+.
T Consensus 3 k~sGyL~k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~e----------------------------------------- 41 (117)
T cd01234 3 KHCGYLYAIGKNVWKKWKKRFFVLVQVSQYTFAMCSYRE----------------------------------------- 41 (117)
T ss_pred ceeEEEEeccchhhhhhheeEEEEEchhHHHHHHHhhhh-----------------------------------------
Confidence 47999999998 789999999999841 2222332
Q ss_pred cCCCcceeEEccceEEEecCCCC-------------CceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003938 157 RQCKPFGEIHLKVSSVRASKSDD-------------KRLTIFTGTKTLHLRCISREDRTVWIDALQAAKD 213 (785)
Q Consensus 157 ~~~~p~G~I~L~~~si~~s~~d~-------------~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~ 213 (785)
+...|...|.|.+.+|...+..+ .-|..+-.+-++.|.++++.||.-||+||-.|-.
T Consensus 42 kks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~avkegd~~~fa~~de~~r~lwvqa~yratg 111 (117)
T cd01234 42 KKAEPTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNAVKEGDELKFATDDENERHLWVQAMYRATG 111 (117)
T ss_pred hcCCchhheeecceEEeccCCCCCCcccccccccchhhhheeccCcEEEEeccchHHHHHHHHHHHHHcC
Confidence 22236667777777776543222 1234555677899999999999999999988754
No 41
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.64 E-value=2.1e-07 Score=83.64 Aligned_cols=89 Identities=25% Similarity=0.330 Sum_probs=67.9
Q ss_pred ceEEEEEeec-CCCC-CceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCC
Q 003938 83 SVAGILYKWV-NYGK-GWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCK 160 (785)
Q Consensus 83 ~~~G~L~K~g-~~~K-~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (785)
+..|||.-.. +.+| |=|.|||||.+.+|+|||...+ ..
T Consensus 2 irkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~ee----------------------------------------KE 41 (110)
T cd01256 2 IRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEE----------------------------------------KE 41 (110)
T ss_pred eeeeeEEeeccceecCCCcceEEEEecceeeeeccccc----------------------------------------cc
Confidence 5689998764 3334 4899999999999999997543 12
Q ss_pred cceeEEccceEEEecCC----CCCceEEEeC--------CeEEEEEcCCHHHHHHHHHHHHHH
Q 003938 161 PFGEIHLKVSSVRASKS----DDKRLTIFTG--------TKTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 161 p~G~I~L~~~si~~s~~----d~~~F~I~t~--------~Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
++|.|.|....++.... ....|.++.+ .|++.|.|+|.++.+.|...+-.|
T Consensus 42 ~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 42 KKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred ccceeeccccEEEeecccccCCCcEEEEEcCcccccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 77999998888775433 2345667654 489999999999999999877655
No 42
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.59 E-value=5.5e-07 Score=83.16 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=74.2
Q ss_pred ceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcc
Q 003938 83 SVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (785)
Q Consensus 83 ~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (785)
+.+|-|.|.. .|+-++|+|.|=++.|.|-+.-.. .+.-+..
T Consensus 5 i~eG~L~K~~--rk~~~~R~ffLFnD~LvY~~~~~~-------------------------------------~~~~~~~ 45 (104)
T cd01218 5 VGEGVLTKMC--RKKPKQRQFFLFNDILVYGNIVIS-------------------------------------KKKYNKQ 45 (104)
T ss_pred EecCcEEEee--cCCCceEEEEEecCEEEEEEeecC-------------------------------------CceeeEe
Confidence 5699999987 577999999999999999653100 0112245
Q ss_pred eeEEccceEEEecCCC---CCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHc
Q 003938 163 GEIHLKVSSVRASKSD---DKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLF 215 (785)
Q Consensus 163 G~I~L~~~si~~s~~d---~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~~ 215 (785)
+.|+|....|.....+ .+.|.|.++.|+|.+.|+|++|+.+||++|+.|++..
T Consensus 46 ~~i~L~~~~v~~~~d~~~~~n~f~I~~~~kSf~v~A~s~~eK~eWl~~i~~ai~~~ 101 (104)
T cd01218 46 HILPLEGVQVESIEDDGIERNGWIIKTPTKSFAVYAATETEKREWMLHINKCVTDL 101 (104)
T ss_pred eEEEccceEEEecCCcccccceEEEecCCeEEEEEcCCHHHHHHHHHHHHHHHHHH
Confidence 7888888877644332 4789999999999999999999999999999998763
No 43
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.42 E-value=1.1e-06 Score=80.60 Aligned_cols=47 Identities=32% Similarity=0.575 Sum_probs=41.5
Q ss_pred eeEEccceEEEecCCCCCceE--EEeCCe--EEEEEcCCHHHHHHHHHHHH
Q 003938 163 GEIHLKVSSVRASKSDDKRLT--IFTGTK--TLHLRCISREDRTVWIDALQ 209 (785)
Q Consensus 163 G~I~L~~~si~~s~~d~~~F~--I~t~~R--t~~L~A~S~edr~~WI~AL~ 209 (785)
-.|.|..|+++..+..++||+ |.+.+| ++.|+|+|++++..||+|+.
T Consensus 52 e~~~l~sc~~r~~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 52 ETLTLKSCSRRKTESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred eEEeeeeccccccCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhc
Confidence 457899999999999999976 777777 89999999999999999985
No 44
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=98.38 E-value=3e-06 Score=80.07 Aligned_cols=103 Identities=21% Similarity=0.320 Sum_probs=60.0
Q ss_pred eEEEEEeec-----C-----CCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhcccccccccc
Q 003938 84 VAGILYKWV-----N-----YGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLG 153 (785)
Q Consensus 84 ~~G~L~K~g-----~-----~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~ 153 (785)
++|||+.+. + ..++|+.-|.||++++|..||++....... +. ..
T Consensus 2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~-~~-------------------------~~ 55 (119)
T PF15410_consen 2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASST-PP-------------------------DI 55 (119)
T ss_dssp -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT--BS---------------------------
T ss_pred ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCC-cc-------------------------cc
Confidence 589998752 1 235699999999999999999843100000 00 00
Q ss_pred ccccCCCcceeEEccceEEEecC---CCCCceEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHH
Q 003938 154 FAARQCKPFGEIHLKVSSVRASK---SDDKRLTIFTG-TKTLHLRCISREDRTVWIDALQAAK 212 (785)
Q Consensus 154 ~~~~~~~p~G~I~L~~~si~~s~---~d~~~F~I~t~-~Rt~~L~A~S~edr~~WI~AL~~a~ 212 (785)
......+|.+.|.|..+...... ..++-|.+.++ +..|.|+|.|.+||+.||.+|+.+.
T Consensus 56 ~~~~~~~p~~~i~L~~a~a~~a~dY~Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 56 QSVENAKPDSSISLHHALAEIASDYTKRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp -SS--E-----EE-TT-EEEEETTBTTCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred cccccCcceeEEEecceEEEeCcccccCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 00122346788999888766532 23456888876 6899999999999999999999875
No 45
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.32 E-value=6.7e-06 Score=77.00 Aligned_cols=99 Identities=21% Similarity=0.237 Sum_probs=63.6
Q ss_pred CcceEEEEEe--ecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccC
Q 003938 81 SASVAGILYK--WVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQ 158 (785)
Q Consensus 81 ~~~~~G~L~K--~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~ 158 (785)
|+.++|||.- .++..|||+++|.||.+..|+.|....+..-. |.
T Consensus 1 gt~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~--p~-------------------------------- 46 (122)
T cd01243 1 GTAYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQ--PS-------------------------------- 46 (122)
T ss_pred CccceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCC--cc--------------------------------
Confidence 4678999954 45566899999999999999999975432100 00
Q ss_pred CCcceeEEcc-----ceEEEec-------CCCCCceEEEe-------CCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003938 159 CKPFGEIHLK-----VSSVRAS-------KSDDKRLTIFT-------GTKTLHLRCISREDRTVWIDALQAAKD 213 (785)
Q Consensus 159 ~~p~G~I~L~-----~~si~~s-------~~d~~~F~I~t-------~~Rt~~L~A~S~edr~~WI~AL~~a~~ 213 (785)
..+.=.|+|+ +++|.++ +.-++-|.|.+ +..+.+|-|+|..|+++|+.||.....
T Consensus 47 ~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l~~ 120 (122)
T cd01243 47 VVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIFRVTTSQISASSSKCSTLMLADTEEEKSKWVGALSELHK 120 (122)
T ss_pred CceeEEEEcCCCCEEEEEecHHHccccCcccCCeEEEEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHHHh
Confidence 0011222221 1122211 12234566544 358999999999999999999987654
No 46
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.18 E-value=7e-06 Score=73.23 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=67.6
Q ss_pred ceEEEEEeecCCCCCceeeEEEEeC-CeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCc
Q 003938 83 SVAGILYKWVNYGKGWRSRWFVLED-GVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (785)
Q Consensus 83 ~~~G~L~K~g~~~K~Wk~RWFVL~~-g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (785)
.+.|.+.|+.+.+ +|+|=|+|.| ..|.|+.... ...
T Consensus 2 l~~g~v~Kr~glf--~kkR~LiLTd~PrL~yvdp~~-----------------------------------------~~~ 38 (89)
T cd01262 2 LKIGAVKKRKGLF--AKKRQLILTNGPRLIYVDPVK-----------------------------------------KVV 38 (89)
T ss_pred ceeeeeeehhccc--cceeeEEEecCceEEEEcCCc-----------------------------------------CeE
Confidence 4689999998864 8999999987 6888887422 126
Q ss_pred ceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 003938 162 FGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAK 212 (785)
Q Consensus 162 ~G~I~L~~~si~~s~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~ 212 (785)
+|+|.+...+........+.|.|+|++|+|+|. +.....+.|++||..+.
T Consensus 39 KgeIp~s~~~l~v~~~~~~~F~I~Tp~rty~le-D~~~~a~~W~~~I~~~~ 88 (89)
T cd01262 39 KGEIPWSDVELRVEVKNSSHFFVHTPNKVYSFE-DPKGRASQWKKAIEDLQ 88 (89)
T ss_pred EeEecccccceEEEEecCccEEEECCCceEEEE-CCCCCHHHHHHHHHHHh
Confidence 799999884444444556899999999999994 55688999999998874
No 47
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.15 E-value=2.1e-05 Score=73.65 Aligned_cols=103 Identities=15% Similarity=0.225 Sum_probs=74.1
Q ss_pred cceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCc
Q 003938 82 ASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (785)
Q Consensus 82 ~~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (785)
-+.+|-|.|-+..-+.++.|+|.|=|+.|.|-|..... .++.|.. ...-.-
T Consensus 4 lI~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~-----------~~~~g~~------------------~~~y~~ 54 (112)
T cd01261 4 FIMEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHGQ-----------PRLPGAS------------------SAEYRL 54 (112)
T ss_pred ccccCcEEEEecccCCcceEEEEEecCeEEEEEeccCc-----------ccccccc------------------cceEEE
Confidence 36789999987555789999999999999999964320 0111110 001224
Q ss_pred ceeEEccceEEEecCC---CCCceEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003938 162 FGEIHLKVSSVRASKS---DDKRLTIFTG-TKTLHLRCISREDRTVWIDALQAAKD 213 (785)
Q Consensus 162 ~G~I~L~~~si~~s~~---d~~~F~I~t~-~Rt~~L~A~S~edr~~WI~AL~~a~~ 213 (785)
++.|.|....|...+. ..+.|.|.+. ++.|.|+|.|++++.+||+||..+..
T Consensus 55 k~~~~l~~~~V~d~~d~~~~knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~~ 110 (112)
T cd01261 55 KEKFFMRKVDINDKPDSSEYKNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQT 110 (112)
T ss_pred EEEEeeeeeEEEEcCCCcccCceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHhc
Confidence 5777777766653322 2478999885 78999999999999999999999864
No 48
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.10 E-value=2.9e-05 Score=71.78 Aligned_cols=91 Identities=19% Similarity=0.317 Sum_probs=60.1
Q ss_pred eEEEEEee--cCC--CCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCC
Q 003938 84 VAGILYKW--VNY--GKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (785)
Q Consensus 84 ~~G~L~K~--g~~--~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (785)
++|||.-- ++. .+||+++|.||.+..|+.|....+..-.
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~------------------------------------- 44 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENS------------------------------------- 44 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCC-------------------------------------
Confidence 68999654 333 3699999999999999999975432100
Q ss_pred CcceeEEccc----eE------EEec-CCCCCceEEEeC--CeEEEEEcCCHHHHHHHHHHHHHH
Q 003938 160 KPFGEIHLKV----SS------VRAS-KSDDKRLTIFTG--TKTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 160 ~p~G~I~L~~----~s------i~~s-~~d~~~F~I~t~--~Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
.|.-+++|.. .+ +... +.-++-|.|..+ .++.+|-|+|..|++.|+.||..-
T Consensus 45 ~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~~~ 109 (112)
T cd01242 45 TPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLVKK 109 (112)
T ss_pred CcEEEEEccceeeeecccHHHeeecCcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHHHh
Confidence 0222233221 11 1111 222456777654 499999999999999999999764
No 49
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.09 E-value=1.3e-06 Score=105.58 Aligned_cols=97 Identities=29% Similarity=0.438 Sum_probs=77.9
Q ss_pred CCcceEEEEEeecC-CCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccC
Q 003938 80 VSASVAGILYKWVN-YGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQ 158 (785)
Q Consensus 80 ~~~~~~G~L~K~g~-~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~ 158 (785)
.+..+.|+|+|+.+ ..+.|.+|||-.+++.|.|+.-... .
T Consensus 272 ~~~~~~~~l~~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~--------------------------------------~- 312 (785)
T KOG0521|consen 272 LGYRMEGYLRKKASNASKTWKRRWFSIQDGQLGYQHRGAD--------------------------------------A- 312 (785)
T ss_pred chhhhhhhhhhhcccchhhHHhhhhhhhcccccccccccc--------------------------------------c-
Confidence 45678899998875 4799999999999999999885221 0
Q ss_pred CCcceeEEccceEEEecCCC-CCc--eEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHcc
Q 003938 159 CKPFGEIHLKVSSVRASKSD-DKR--LTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFP 216 (785)
Q Consensus 159 ~~p~G~I~L~~~si~~s~~d-~~~--F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~~~ 216 (785)
.....++|..|+|...... +++ |.|++++|+|+|+|+|+.++++||.+|+..+...-
T Consensus 313 -~~~~~~dL~~csvk~~~~~~drr~CF~iiS~tks~~lQAes~~d~~~Wi~~i~nsi~s~l 372 (785)
T KOG0521|consen 313 -ENVLIEDLRTCSVKPDAEQRDRRFCFEIISPTKSYLLQAESEKDCQDWISALQNSILSAL 372 (785)
T ss_pred -cccccccchhccccCCcccccceeeEEEecCCcceEEecCchhHHHHHHHHHHHHHHHHH
Confidence 0156778999999876554 454 56999999999999999999999999999987643
No 50
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=97.85 E-value=8.4e-06 Score=93.78 Aligned_cols=98 Identities=17% Similarity=0.316 Sum_probs=82.0
Q ss_pred CCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCC
Q 003938 80 VSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (785)
Q Consensus 80 ~~~~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (785)
..-..+||+.|-+...|.|++||||+++|..+||+.++.. ..
T Consensus 247 e~~ekSgy~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~--------------------------------------~~ 288 (936)
T KOG0248|consen 247 ETMEKSGYWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNR--------------------------------------DE 288 (936)
T ss_pred chhhcccchhcchHHHHHHHhHheeeccceEEEEEcCCCc--------------------------------------cc
Confidence 4445789999999999999999999999999999987652 22
Q ss_pred CcceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHc
Q 003938 160 KPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLF 215 (785)
Q Consensus 160 ~p~G~I~L~~~si~~s~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~~ 215 (785)
+|.|.|++..-.+.+.......|..++.+.+|+|.++|.--..+|+..|++++...
T Consensus 289 ~p~s~~d~~s~~~~~~~~~s~~fqli~~t~~~~~~~~s~~lt~dw~~iL~~~iKv~ 344 (936)
T KOG0248|consen 289 EPASKIDIRSVTKLEQQGAAYAFQLITSTDKMNFMTESERTTHDWVTILSAAIKAT 344 (936)
T ss_pred cccCcccccccceeeccchhHHhhhhhhceeEEEeccChhhhhhhHHHHHHHHHHH
Confidence 36677777766666666666788899999999999999999999999999997654
No 51
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.78 E-value=0.00014 Score=67.69 Aligned_cols=88 Identities=16% Similarity=0.271 Sum_probs=63.8
Q ss_pred eEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcce
Q 003938 84 VAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFG 163 (785)
Q Consensus 84 ~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G 163 (785)
++||+.-.++.=+.|||+|++|+...|+||++.... ++--
T Consensus 2 kEGWmVHyT~~d~~rKRhYWrLDsK~Itlf~~e~~s----------------------------------------kyyK 41 (117)
T cd01239 2 KEGWMVHYTSSDNRRKKHYWRLDSKAITLYQEESGS----------------------------------------RYYK 41 (117)
T ss_pred ccceEEEEecCccceeeeEEEecCCeEEEEEcCCCC----------------------------------------eeeE
Confidence 689999999999999999999999999999985432 1333
Q ss_pred eEEccceE-EE-------ecCCCCCceEEEeCCeEEEEEcC--------------------CHHHHHHHHHHHHHH
Q 003938 164 EIHLKVSS-VR-------ASKSDDKRLTIFTGTKTLHLRCI--------------------SREDRTVWIDALQAA 211 (785)
Q Consensus 164 ~I~L~~~s-i~-------~s~~d~~~F~I~t~~Rt~~L~A~--------------------S~edr~~WI~AL~~a 211 (785)
+|.|..-. |. .....+..|.|.|...+|+...+ ..+..+.|-.||+.|
T Consensus 42 eIPLsEIl~V~~~~~~~~~~~~~~hcFEi~T~~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 42 EIPLAEILSVSSNNGDSVLAKHPPHCFEIRTTTNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EeehHHheEEeccCCCcCCCCCCCcEEEEEecCEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 44443211 11 11345678999999999999654 345568888888764
No 52
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.78 E-value=0.00013 Score=67.65 Aligned_cols=32 Identities=31% Similarity=0.590 Sum_probs=28.5
Q ss_pred eEEEEEeecCCCCCceeeEEEEeCCeEEEEee
Q 003938 84 VAGILYKWVNYGKGWRSRWFVLEDGVLSYYKI 115 (785)
Q Consensus 84 ~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~ 115 (785)
++|+||-+.-.-|.||+|||+|+..-|+|+..
T Consensus 2 ~~g~LylK~~gkKsWKk~~f~LR~SGLYy~~K 33 (114)
T cd01259 2 MEGPLYLKADGKKSWKKYYFVLRSSGLYYFPK 33 (114)
T ss_pred ccceEEEccCCCccceEEEEEEeCCeeEEccC
Confidence 68999998777799999999999999988875
No 53
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.69 E-value=8.3e-05 Score=85.86 Aligned_cols=98 Identities=20% Similarity=0.323 Sum_probs=63.1
Q ss_pred CcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCC
Q 003938 81 SASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCK 160 (785)
Q Consensus 81 ~~~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (785)
.....|||.|.+...+ |++|||.|.++.++.....++++-. ...+
T Consensus 376 Dv~~~G~l~k~~~~~~-wk~ry~~l~~~~l~~~~~~~~~~~~----------------------------------~~~~ 420 (478)
T PTZ00267 376 DVTHGGYLYKYSSDMR-WKKRYFYIGNGQLRISLSENPENDG----------------------------------VAPK 420 (478)
T ss_pred CcccceEEeccCCCcc-hhhheEEecCCceEEEeccccccCC----------------------------------CCCc
Confidence 4568999999998876 9999999998777766543332101 0001
Q ss_pred cceeEEccceEEE-e--cCCCCCceEEEe-CCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003938 161 PFGEIHLKVSSVR-A--SKSDDKRLTIFT-GTKTLHLRCISREDRTVWIDALQAAKD 213 (785)
Q Consensus 161 p~G~I~L~~~si~-~--s~~d~~~F~I~t-~~Rt~~L~A~S~edr~~WI~AL~~a~~ 213 (785)
+.....+..+... . ....+..|.|.+ ..+.+.|.|+|.++|+.||.+||.|..
T Consensus 421 ~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 421 SVNLETVNDVFPVPEVYSQKHPNQLVLWFNNGQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred cccHHHhcccccccHHhcCCCCceEEEEecCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence 1121122222211 1 123456677755 566777888999999999999999853
No 54
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.67 E-value=6e-05 Score=89.72 Aligned_cols=98 Identities=16% Similarity=0.370 Sum_probs=72.4
Q ss_pred CCcceEEEEEee--cCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhcccccccccccccc
Q 003938 80 VSASVAGILYKW--VNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAAR 157 (785)
Q Consensus 80 ~~~~~~G~L~K~--g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~ 157 (785)
..+...|+|+-. +..+..|.+||++|.+|++.|+|...++ +
T Consensus 988 idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDE-------------------------------------k 1030 (1116)
T KOG3640|consen 988 IDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDE-------------------------------------K 1030 (1116)
T ss_pred cceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchh-------------------------------------c
Confidence 344566999875 3445669999999999999999975432 3
Q ss_pred CCCcceeEEccceEEEecC-------CCCCceEEEeC-------------Ce-EEEEEcCCHHHHHHHHHHHHHHHHH
Q 003938 158 QCKPFGEIHLKVSSVRASK-------SDDKRLTIFTG-------------TK-TLHLRCISREDRTVWIDALQAAKDL 214 (785)
Q Consensus 158 ~~~p~G~I~L~~~si~~s~-------~d~~~F~I~t~-------------~R-t~~L~A~S~edr~~WI~AL~~a~~~ 214 (785)
...|.|.|+|..|+-.... ...+.|.|.+- .| ...|.|+|.++++.|+.+|+.+...
T Consensus 1031 rK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~~ 1108 (1116)
T KOG3640|consen 1031 RKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLKQ 1108 (1116)
T ss_pred ccCcceeeehhhhhccccccchhhhccCCceeEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHHH
Confidence 4458999999988744221 23456777631 24 6789999999999999999998654
No 55
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.55 E-value=0.00032 Score=82.95 Aligned_cols=97 Identities=14% Similarity=0.298 Sum_probs=63.6
Q ss_pred CcceEEEEEeecC-CC--CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhcccccccccccccc
Q 003938 81 SASVAGILYKWVN-YG--KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAAR 157 (785)
Q Consensus 81 ~~~~~G~L~K~g~-~~--K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~ 157 (785)
.+.++||||--|. .+ .--++|||||++..|.|||.+..++.
T Consensus 3 ~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~~------------------------------------ 46 (719)
T PLN00188 3 KVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDNQ------------------------------------ 46 (719)
T ss_pred cceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCcccc------------------------------------
Confidence 3579999999873 22 23899999999999999997554321
Q ss_pred CCCcceeEEccceEEEec----CCCCCceEEEe------CCeEEEEEcCCHHHHHHHHHHHHHHHHHc
Q 003938 158 QCKPFGEIHLKVSSVRAS----KSDDKRLTIFT------GTKTLHLRCISREDRTVWIDALQAAKDLF 215 (785)
Q Consensus 158 ~~~p~G~I~L~~~si~~s----~~d~~~F~I~t------~~Rt~~L~A~S~edr~~WI~AL~~a~~~~ 215 (785)
.|..+..+....-++. .-..+.|+|.+ ..+...|.|.|.+|..+||+||+.|++..
T Consensus 47 --~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 47 --VPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred --ccceeeccCCCceEeecCceEEcCceEEEEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 0111111222221111 11123344332 46889999999999999999999999863
No 56
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.47 E-value=0.00028 Score=65.59 Aligned_cols=95 Identities=18% Similarity=0.283 Sum_probs=59.2
Q ss_pred EEEEeecC----CCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCc
Q 003938 86 GILYKWVN----YGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (785)
Q Consensus 86 G~L~K~g~----~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (785)
|||..+.. ..+.||+|+++|.++.|..|++..-.+-.-+.+ . ..-+
T Consensus 3 GW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p----~--------------------------~~y~ 52 (108)
T cd01258 3 GWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRP----L--------------------------YVYK 52 (108)
T ss_pred eecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhCh----h--------------------------hhCh
Confidence 88888743 348899999999999999999743211000000 0 0001
Q ss_pred ceeEEccceEEEe----cCCCCCceEEEeCC--eEEEEEcCCHHHHHHHHHHHHH
Q 003938 162 FGEIHLKVSSVRA----SKSDDKRLTIFTGT--KTLHLRCISREDRTVWIDALQA 210 (785)
Q Consensus 162 ~G~I~L~~~si~~----s~~d~~~F~I~t~~--Rt~~L~A~S~edr~~WI~AL~~ 210 (785)
.-+|--++..... ....+..|.|.+++ .+.+|+.++..|+..|.+||+.
T Consensus 53 L~~~atrvv~~~~~~~~~~~~~~~F~irtg~~vesh~fsVEt~~dL~~W~raiv~ 107 (108)
T cd01258 53 LYDVATRLVKNSSTRRLNDQRDNCFLIRTGTQVENHYLRVETHRDLASWERALVR 107 (108)
T ss_pred hHHhhhheeccCCccCcCCCCceEEEEEcCCceeeEEEEecCHHHHHHHHHHHhc
Confidence 1100001100000 12445679999987 5899999999999999999974
No 57
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=97.36 E-value=0.0003 Score=82.08 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=70.8
Q ss_pred CCCcceEEEEEeecC-----CC-CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccc
Q 003938 79 GVSASVAGILYKWVN-----YG-KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRL 152 (785)
Q Consensus 79 ~~~~~~~G~L~K~g~-----~~-K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~ 152 (785)
-.++.++|.|+++.. .+ +..|+|||-|.+..|+|.|+.+.
T Consensus 561 ~~p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~---------------------------------- 606 (800)
T KOG2059|consen 561 QEPVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGK---------------------------------- 606 (800)
T ss_pred CCCceecccceEeccccccchhhhhhhheEEEeccceeEEecCCcc----------------------------------
Confidence 355566666655432 22 56899999999999999998543
Q ss_pred cccccCCCcceeEEccceEEEe-----cCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHccc
Q 003938 153 GFAARQCKPFGEIHLKVSSVRA-----SKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFPR 217 (785)
Q Consensus 153 ~~~~~~~~p~G~I~L~~~si~~-----s~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~~~~ 217 (785)
+|.+.|.|...-..+ +-...+-|.|++.+|+++|+|.+-.|...|+.||..+..+.+.
T Consensus 607 -------q~~~~Ipl~nI~avEklee~sF~~knv~qVV~~drtly~Q~~n~vEandWldaL~kvs~~N~~ 669 (800)
T KOG2059|consen 607 -------QPIYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTDRTLYVQAKNCVEANDWLDALRKVSCCNQN 669 (800)
T ss_pred -------CcccceeHHHHHHHHHhhhhccCCCceEEEEecCcceeEecCCchHHHHHHHHHHHHhccCcc
Confidence 366777665332221 1123466889888899999999999999999999999776543
No 58
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=97.29 E-value=0.00011 Score=83.46 Aligned_cols=97 Identities=27% Similarity=0.377 Sum_probs=69.9
Q ss_pred cceEEEEEee-c--CCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccC
Q 003938 82 ASVAGILYKW-V--NYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQ 158 (785)
Q Consensus 82 ~~~~G~L~K~-g--~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~ 158 (785)
..++|-|.-+ | ..+|.|+.|||.|.+-.|.|.|.+.+++.. .
T Consensus 735 p~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS~-----------------------------------~ 779 (851)
T KOG3723|consen 735 PLIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDSD-----------------------------------D 779 (851)
T ss_pred chhcchhhhhccchhhhhhhccceEEecchhhhcccCCCCCCCC-----------------------------------C
Confidence 4889999643 3 356999999999999999999876542211 0
Q ss_pred CCcceeEEccc-eEE------EecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHccc
Q 003938 159 CKPFGEIHLKV-SSV------RASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFPR 217 (785)
Q Consensus 159 ~~p~G~I~L~~-~si------~~s~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~~~~ 217 (785)
-.|+|.. -+| +..++-.+.|.|+|..+||.|+|.+++..++|++-|+-|.+...+
T Consensus 780 ----~~IDl~~IRSVk~v~~kr~~rslpKAFEIFTAD~T~ILKaKDeKNAEEWlqCL~IavAHa~~ 841 (851)
T KOG3723|consen 780 ----CPIDLSKIRSVKAVAKKRRDRSLPKAFEIFTADKTYILKAKDEKNAEEWLQCLNIAVAHAKE 841 (851)
T ss_pred ----CCccHHHhhhHHHHHhhhhhcccchhhheeecCceEEeecccccCHHHHHHHHHHHHHHHHH
Confidence 1122210 011 112344678999999999999999999999999999999876543
No 59
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=97.25 E-value=0.0002 Score=84.60 Aligned_cols=122 Identities=19% Similarity=0.287 Sum_probs=86.1
Q ss_pred CCcceEEEEEeecCCC-CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccC
Q 003938 80 VSASVAGILYKWVNYG-KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQ 158 (785)
Q Consensus 80 ~~~~~~G~L~K~g~~~-K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~ 158 (785)
.++.++|||.|-.--+ --.++||.-+.+..|.||.+..+
T Consensus 85 sp~~~~gwldk~~pqg~~~~qkr~vkf~~~s~~yf~~~k~---------------------------------------- 124 (1186)
T KOG1117|consen 85 SPVIKSGWLDKLSPQGEYPFQKRWVKFDGSSLEYFLSPKD---------------------------------------- 124 (1186)
T ss_pred CchhhcchhhccCcCcccccCccceecCCCCccccCCCCC----------------------------------------
Confidence 3478999999964332 23899999999999999997432
Q ss_pred CCcceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHccc-cccCCCCCCCcccccchHHH
Q 003938 159 CKPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFPR-LLTSTDFSPSEDVVVSTERL 237 (785)
Q Consensus 159 ~~p~G~I~L~~~si~~s~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~~~~-~~~~~~~~~~~~~~~s~e~l 237 (785)
.-+.|.|.+...+.+ ....+..|.++++.|+|.+++++..+|..|+.+|+++...-.. .......+|...........
T Consensus 125 py~k~~i~va~is~v-~~~gd~kfevitn~r~fvfr~e~~~~r~~w~s~l~s~~~~Q~l~~ap~pp~pP~raG~lelrg~ 203 (1186)
T KOG1117|consen 125 PYSKGPIPVAAISAV-RNFGDNKFEVITNQRTFVFRQESEGERFIWVSPLQSALKEQRLRSAPPPPVPPPRAGWLELRGF 203 (1186)
T ss_pred CCCCCceeeehhhhh-hhccCceEEEEecceEEEEecCCcccceeeechhhhcchhhhhccCCCCCCCCCCccchhcccc
Confidence 125577777665544 2467789999999999999999999999999999999654311 11112233555555555555
Q ss_pred HHHHh
Q 003938 238 RLRLL 242 (785)
Q Consensus 238 r~rL~ 242 (785)
+.|+.
T Consensus 204 kak~f 208 (1186)
T KOG1117|consen 204 KAKLF 208 (1186)
T ss_pred cccee
Confidence 55553
No 60
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=97.24 E-value=0.003 Score=60.15 Aligned_cols=33 Identities=33% Similarity=0.547 Sum_probs=29.0
Q ss_pred CceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 003938 180 KRLTIFTGTKTLHLRCISREDRTVWIDALQAAK 212 (785)
Q Consensus 180 ~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~ 212 (785)
..|.|.++.|++.|.|.|.++.+.|+.||+...
T Consensus 89 ~si~i~t~~R~L~l~a~s~~~~~~W~~aL~~L~ 121 (123)
T PF12814_consen 89 KSIIIVTPDRSLDLTAPSRERHEIWFNALRYLL 121 (123)
T ss_pred eEEEEEcCCeEEEEEeCCHHHHHHHHHHHHHHh
Confidence 345588999999999999999999999998754
No 61
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.22 E-value=0.0037 Score=57.20 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=65.4
Q ss_pred ceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcc
Q 003938 83 SVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (785)
Q Consensus 83 ~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (785)
.++|.|.-++. =+.|+..|=+..|.|.|..+. + -.-+
T Consensus 5 lleg~l~~~~~----~~eR~vFLFe~~ll~~K~~~~-~--------------------------------------y~~K 41 (97)
T cd01222 5 LLEGRFREHGG----GKPRLLFLFQTMLLIAKPRGD-K--------------------------------------YQFK 41 (97)
T ss_pred eeeceEEeecC----CCceEEEEecccEEEEEecCC-e--------------------------------------eEEE
Confidence 57888875543 347999999999999996442 1 1245
Q ss_pred eeEEccceEEEec-CCCCCceEEEeC---CeEEEEEcCCHHHHHHHHHHHHHHH
Q 003938 163 GEIHLKVSSVRAS-KSDDKRLTIFTG---TKTLHLRCISREDRTVWIDALQAAK 212 (785)
Q Consensus 163 G~I~L~~~si~~s-~~d~~~F~I~t~---~Rt~~L~A~S~edr~~WI~AL~~a~ 212 (785)
..|.+..-.+.++ ..|+++|.|... .++|.|+|.|.++++.||++|+.+.
T Consensus 42 ~~i~~~~l~i~e~~~~d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 42 AYIPCKNLMLVEHLPGEPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred EEEEecceEEecCCCCCCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 6676766666655 346899998654 3799999999999999999999874
No 62
>PLN02866 phospholipase D
Probab=97.12 E-value=0.0029 Score=77.89 Aligned_cols=111 Identities=20% Similarity=0.250 Sum_probs=69.7
Q ss_pred CCcceEEEEEeec-----C------C---------CCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchh
Q 003938 80 VSASVAGILYKWV-----N------Y---------GKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSI 139 (785)
Q Consensus 80 ~~~~~~G~L~K~g-----~------~---------~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~ 139 (785)
.+..+|||++|+. + . .-+|++|||||+++.|.|.+.....++. ++-++ |.
T Consensus 180 g~K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~~~~~~-------~v~lf--D~- 249 (1068)
T PLN02866 180 GPKLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPFDAKPL-------DIIVF--DV- 249 (1068)
T ss_pred CCCcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCCCCcee-------EEEEE--ec-
Confidence 4567899999992 1 1 1359999999999999999764432211 11111 10
Q ss_pred hhhhccccccccccccccCCCcceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHc
Q 003938 140 RFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLF 215 (785)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~p~G~I~L~~~si~~s~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~~ 215 (785)
.+ ....+--|.|.|..-. .+...-...|.|.+++|++.|+|.|......|+.||+.+....
T Consensus 250 ----~~----------~~~~~~~~~~~~~~~~-k~~~~~~~~~~i~~~~r~l~l~~~s~~~~~~w~~ai~~~~~~~ 310 (1068)
T PLN02866 250 ----LP----------ASNGNGEGQISLAKEI-KERNPLRFGFKVTCGNRSIRLRTKSSAKVKDWVAAINDAGLRP 310 (1068)
T ss_pred ----cc----------ccccCCCcceeecccc-cccCCCcceEEEecCceEEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 00 0001112333332211 1112234578899999999999999999999999999997543
No 63
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.97 E-value=0.0022 Score=61.18 Aligned_cols=79 Identities=16% Similarity=0.174 Sum_probs=50.0
Q ss_pred ceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcceeEEccceEEEe---
Q 003938 98 WRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVRA--- 174 (785)
Q Consensus 98 Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G~I~L~~~si~~--- 174 (785)
-++||+.|-+++|.|-|.+..++..+. +.-+++.|.+.......
T Consensus 27 ~~~vylfLFnDlLl~tkkK~~~~f~V~---------------------------------dy~~r~~l~V~~~e~~~~~~ 73 (125)
T cd01221 27 ARTIYLFLFNDLLLITKKKLGSTFVVF---------------------------------DYAPRSFLRVEKIEPDNQKI 73 (125)
T ss_pred CCcEEEEEecceEEEEEecCCCeEEEE---------------------------------eeccccceEEeecccccccc
Confidence 458899999999999997655443320 01133333333221110
Q ss_pred -----cCCCCCceEEE------eCCeEEEEEcCCHHHHHHHHHHHH
Q 003938 175 -----SKSDDKRLTIF------TGTKTLHLRCISREDRTVWIDALQ 209 (785)
Q Consensus 175 -----s~~d~~~F~I~------t~~Rt~~L~A~S~edr~~WI~AL~ 209 (785)
.......|.|. .-++.+.|+|+|+.||.+||+||.
T Consensus 74 ~~~~~~~~~~~~F~ltLl~N~~gk~~el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 74 PLGSNLVGRPNLFLLTLLRNADDKQAELLLSADSQSDRERWLSALA 119 (125)
T ss_pred cccccccCCCceEEEEeeccCCCCEEEEEEECCCHHHHHHHHHhcC
Confidence 01345667764 224789999999999999999984
No 64
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.93 E-value=0.011 Score=55.22 Aligned_cols=93 Identities=20% Similarity=0.253 Sum_probs=65.9
Q ss_pred ceEEEEEeecCCCCCc-eeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCc
Q 003938 83 SVAGILYKWVNYGKGW-RSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (785)
Q Consensus 83 ~~~G~L~K~g~~~K~W-k~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (785)
+++|-|.+-+. .++| +.|.|.|=|++|.|-|..-- . ...-.-
T Consensus 3 i~~Gel~~~s~-~~g~~q~R~~FLFD~~LI~CKkd~~---r---------------------------------~~~~~y 45 (109)
T cd01224 3 FLQGEATRQKQ-NKGWNSSRVLFLFDHQMVLCKKDLI---R---------------------------------RDHLYY 45 (109)
T ss_pred eEeeeEEEEec-ccCCcccEEEEEecceEEEEecccc---c---------------------------------CCcEEE
Confidence 57888988773 3444 57999999999999994210 0 001125
Q ss_pred ceeEEccceEEEecCCC---------CCceEEEeC--CeEEEEEcCCHHHHHHHHHHHHHHH
Q 003938 162 FGEIHLKVSSVRASKSD---------DKRLTIFTG--TKTLHLRCISREDRTVWIDALQAAK 212 (785)
Q Consensus 162 ~G~I~L~~~si~~s~~d---------~~~F~I~t~--~Rt~~L~A~S~edr~~WI~AL~~a~ 212 (785)
+|.|.|..+.|.-.+.. .+.|.|+.. .+.|.|+|.|+++.+.||+||..-+
T Consensus 46 Kgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~~er 107 (109)
T cd01224 46 KGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFALER 107 (109)
T ss_pred EEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHHHhh
Confidence 68899988888744221 234667654 4789999999999999999998654
No 65
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=96.47 E-value=0.0021 Score=59.31 Aligned_cols=97 Identities=22% Similarity=0.255 Sum_probs=61.5
Q ss_pred cceEEEEEeecCCC-CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCC
Q 003938 82 ASVAGILYKWVNYG-KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCK 160 (785)
Q Consensus 82 ~~~~G~L~K~g~~~-K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (785)
.++.||+.|.|+.+ ..|++|||-|-.+.|-.|...+..+.+ +|--+
T Consensus 3 cIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~~e----------Li~M~----------------------- 49 (116)
T cd01240 3 CIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANKPE----------LITMD----------------------- 49 (116)
T ss_pred eEEeeehhhhCCHHHHHHHHHHheeCcceeeecccccccCCc----------EEEee-----------------------
Confidence 47899999999987 569999999999999886432221111 11000
Q ss_pred cceeEEcc-ceE-EEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHcc
Q 003938 161 PFGEIHLK-VSS-VRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFP 216 (785)
Q Consensus 161 p~G~I~L~-~~s-i~~s~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~~~ 216 (785)
++. ++. ....+.+.|--...-+++.|.|++++.-+...|..-|+.+-....
T Consensus 50 -----~i~~V~~e~~~iK~~~CI~ik~k~~~k~vlt~~d~i~l~qW~~elr~a~r~Sq 102 (116)
T cd01240 50 -----QIEDVSVEFQQIKEENCILLKIRDEKKIVLTNSDEIELKQWKKELRDAHRESQ 102 (116)
T ss_pred -----hhhhcchhheeeccCceEEEEEcCCceEEEecCCcHHHHHHHHHHHHHHHHHH
Confidence 011 110 011122333222344678899999999999999999998855433
No 66
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=96.45 E-value=0.0056 Score=70.30 Aligned_cols=98 Identities=24% Similarity=0.463 Sum_probs=69.6
Q ss_pred CcceEEEEEee--cCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccC
Q 003938 81 SASVAGILYKW--VNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQ 158 (785)
Q Consensus 81 ~~~~~G~L~K~--g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~ 158 (785)
+.+++||||-| ...++.|-+-||+.+...-.+- |.|..++ .+..
T Consensus 264 p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~T---------Mvp~~qk-------------------------~g~k 309 (812)
T KOG1451|consen 264 PSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFT---------MVPANQK-------------------------TGTK 309 (812)
T ss_pred CcccceeeeehhhhhccchhhhheeEeecccceEE---------EeecccC-------------------------CCCc
Confidence 45899999987 4678999999999855321111 1111000 0111
Q ss_pred CCcceeEEccceEEEecCCCCCceE--EEeCCe--EEEEEcCCHHHHHHHHHHHHHHH
Q 003938 159 CKPFGEIHLKVSSVRASKSDDKRLT--IFTGTK--TLHLRCISREDRTVWIDALQAAK 212 (785)
Q Consensus 159 ~~p~G~I~L~~~si~~s~~d~~~F~--I~t~~R--t~~L~A~S~edr~~WI~AL~~a~ 212 (785)
.++...+.|+.|+-+..++-++||+ |-+..| ++.++|-|++||..||+|+-.+.
T Consensus 310 ~g~~~~~~lKsC~RRktdSIdKRFCFDve~~erpgviTmQALSE~drrlWmeAMDG~e 367 (812)
T KOG1451|consen 310 MGQTATFKLKSCSRRKTDSIDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGAE 367 (812)
T ss_pred CCCcceEEehhhccCcccccccceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCCC
Confidence 2256778899999888888899987 555554 89999999999999999998773
No 67
>PF15406 PH_6: Pleckstrin homology domain
Probab=96.40 E-value=0.0073 Score=55.87 Aligned_cols=49 Identities=22% Similarity=0.354 Sum_probs=41.2
Q ss_pred cceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHH
Q 003938 161 PFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQA 210 (785)
Q Consensus 161 p~G~I~L~~~si~~s~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~ 210 (785)
|.|.|+|..++-. .......|.+...+....|.|.|..||+.||.+|..
T Consensus 63 P~GiinLadase~-~~~g~~kF~f~~~G~khtF~A~s~aERD~Wv~~lk~ 111 (112)
T PF15406_consen 63 PSGIINLADASEP-EKDGSNKFHFKIKGHKHTFEAASAAERDNWVAQLKA 111 (112)
T ss_pred CcceEehhhcccc-ccCCCceEEEEeCCceeeeecCCHHHhccHHHHhhc
Confidence 8899999766644 245567899888999999999999999999999864
No 68
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=96.24 E-value=0.0073 Score=68.79 Aligned_cols=37 Identities=27% Similarity=0.497 Sum_probs=32.8
Q ss_pred CCCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEee
Q 003938 79 GVSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKI 115 (785)
Q Consensus 79 ~~~~~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~ 115 (785)
+....|.|+||-+...-|+||+-||||+..-|+|+..
T Consensus 314 ~~~pei~GfL~~K~dgkKsWKk~yf~LR~SGLYys~K 350 (622)
T KOG3751|consen 314 SSPPEIQGFLYLKEDGKKSWKKHYFVLRRSGLYYSTK 350 (622)
T ss_pred CCCccccceeeecccccccceeEEEEEecCcceEccC
Confidence 3567899999999988899999999999988998875
No 69
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.06 E-value=0.0042 Score=70.99 Aligned_cols=107 Identities=19% Similarity=0.318 Sum_probs=67.4
Q ss_pred CCCcceEEEEEeec---------CCC-CCceeeEEEEeCCeEEEEeecCC-CccccCcccCCCceeeccchhhhhhcccc
Q 003938 79 GVSASVAGILYKWV---------NYG-KGWRSRWFVLEDGVLSYYKIHGP-DKILMSPARDNNVRVIGEDSIRFMRKANW 147 (785)
Q Consensus 79 ~~~~~~~G~L~K~g---------~~~-K~Wk~RWFVL~~g~L~YYk~~~~-~~~~~~~~~~~~~r~ig~~~~~~~~~~~~ 147 (785)
++.+-+.|+|..+. -.+ +|||.=|-||++-+|++-|++-. .+... +.+ +
T Consensus 503 sa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~kals-----------e~~----l----- 562 (774)
T KOG0932|consen 503 SAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGKALS-----------ESD----L----- 562 (774)
T ss_pred CchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcccchh-----------hhh----h-----
Confidence 57778899997653 223 57999999999999988886432 11110 000 0
Q ss_pred ccccccccccCCCcceeEEccceEEEec-CCCCCceEEEeCC-eEEEEEcCCHHHHHHHHHHHHHHHHHccc
Q 003938 148 SSHRLGFAARQCKPFGEIHLKVSSVRAS-KSDDKRLTIFTGT-KTLHLRCISREDRTVWIDALQAAKDLFPR 217 (785)
Q Consensus 148 ~~~~~~~~~~~~~p~G~I~L~~~si~~s-~~d~~~F~I~t~~-Rt~~L~A~S~edr~~WI~AL~~a~~~~~~ 217 (785)
..+. .||-..++-..+ .....-|.+.|.. |.|.|+|.|.++|+.||..|+-|.+.|.-
T Consensus 563 -----------knav-svHHALAt~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA~fSa 622 (774)
T KOG0932|consen 563 -----------KNAV-SVHHALATPATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAAAFSA 622 (774)
T ss_pred -----------hhhh-hhhhhhcCCCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHHhccC
Confidence 0000 111111111000 1234568888864 99999999999999999999999998753
No 70
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=95.94 E-value=0.01 Score=68.54 Aligned_cols=106 Identities=15% Similarity=0.224 Sum_probs=76.7
Q ss_pred CCCCCCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhcccccccccccc
Q 003938 76 NGGGVSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFA 155 (785)
Q Consensus 76 ~~~~~~~~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~ 155 (785)
.++|-..+++|.|+|.......-+.||.+|-+..|.|-+-+.. +.|
T Consensus 266 V~PsreLiKEG~l~Kis~k~~~~qeRylfLFNd~~lyc~~r~~--------------~~~-------------------- 311 (623)
T KOG4424|consen 266 VSPSRELIKEGQLQKISAKNGTTQERYLFLFNDILLYCKPRKR--------------LPG-------------------- 311 (623)
T ss_pred cCcHHHHhhccceeeeeccCCCcceeEEEEehhHHHhhhhhhh--------------ccc--------------------
Confidence 3445667899999999977778999999999999999885321 101
Q ss_pred ccCCCcceeEEccceEEEecCCC--CCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHcc
Q 003938 156 ARQCKPFGEIHLKVSSVRASKSD--DKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFP 216 (785)
Q Consensus 156 ~~~~~p~G~I~L~~~si~~s~~d--~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~~~ 216 (785)
....++-.+.+....+.+.... ...|.+....|.+.|.|.|.++..+||++|+.+++.+.
T Consensus 312 -~k~~~r~~~s~~~~~v~~~~~~~~~~tF~~~G~~r~vel~a~t~~ek~eWv~~I~~~Id~~k 373 (623)
T KOG4424|consen 312 -SKYEVRARCSISHMQVQEDDNEELPHTFILTGKKRGVELQARTEQEKKEWVQAIQDAIDKHK 373 (623)
T ss_pred -ceeccceeeccCcchhcccccccCCceEEEecccceEEeecCchhhHHHHHHHHHHHHHHHH
Confidence 0111333344444444433333 46687777799999999999999999999999988764
No 71
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=95.53 E-value=0.0066 Score=69.71 Aligned_cols=35 Identities=23% Similarity=0.457 Sum_probs=29.8
Q ss_pred CceEEEeC-CeEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003938 180 KRLTIFTG-TKTLHLRCISREDRTVWIDALQAAKDL 214 (785)
Q Consensus 180 ~~F~I~t~-~Rt~~L~A~S~edr~~WI~AL~~a~~~ 214 (785)
..|.|+.. ..|+||.|.+-+||++||+||+.-+-.
T Consensus 446 e~F~IVs~tgqtWhFeAtt~EERdaWvQai~sqIla 481 (749)
T KOG0705|consen 446 ECFEIVSNTGQTWHFEATTYEERDAWVQAIQSQILA 481 (749)
T ss_pred ceEEEeccccchhhhhhcchhhHHHHHHHHHHHHHH
Confidence 35887776 489999999999999999999987643
No 72
>PF15404 PH_4: Pleckstrin homology domain
Probab=95.32 E-value=0.11 Score=52.87 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=29.8
Q ss_pred eEEEEEeecCCCCCceeeEEEEeCCeEEEEee
Q 003938 84 VAGILYKWVNYGKGWRSRWFVLEDGVLSYYKI 115 (785)
Q Consensus 84 ~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~ 115 (785)
|+|+||.+.+....++++++||..|.|.-|..
T Consensus 1 ~sG~LY~K~~khs~F~~~~vvL~~G~Li~f~~ 32 (185)
T PF15404_consen 1 MSGYLYQKPRKHSTFKKYFVVLIPGFLILFQL 32 (185)
T ss_pred CCceeeecCCCCCCceEEEEEEeCCEEEEEEE
Confidence 57999999988889999999999999999987
No 73
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.24 E-value=0.3 Score=46.12 Aligned_cols=99 Identities=13% Similarity=0.222 Sum_probs=62.3
Q ss_pred ceEEEEEeecCC---CCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCC
Q 003938 83 SVAGILYKWVNY---GKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (785)
Q Consensus 83 ~~~G~L~K~g~~---~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (785)
.+.|-+.-|.+. .+.=+.|-+.|-+..|.|.|...+.+-. + ...-
T Consensus 6 l~Q~~f~v~~~~~~~~~K~~eR~vFLFe~~lvfsk~~~~~~~~---------------------------~-----~~~Y 53 (114)
T cd01232 6 LLQDTFQVWDPKAGLIQKGRERRVFLFEQSIIFAKEVKKKKQF---------------------------G-----NPKY 53 (114)
T ss_pred EEEccEEEEeCCccccCCCceeEEEEeeceEEEEEEeccCCCC---------------------------C-----ceeE
Confidence 445555555443 2234566777777888888864321000 0 0001
Q ss_pred CcceeEEccceEEEec-CCCCCceEEEeCC-----eEEEEEcCCHHHHHHHHHHHHHHHH
Q 003938 160 KPFGEIHLKVSSVRAS-KSDDKRLTIFTGT-----KTLHLRCISREDRTVWIDALQAAKD 213 (785)
Q Consensus 160 ~p~G~I~L~~~si~~s-~~d~~~F~I~t~~-----Rt~~L~A~S~edr~~WI~AL~~a~~ 213 (785)
.-+..|.+..-.+.+. +.|+++|.|...+ .+|.|+|.|.+.+++||..|+.+.+
T Consensus 54 ~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il~ 113 (114)
T cd01232 54 IYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIREILQ 113 (114)
T ss_pred EEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHhh
Confidence 1235566655555554 5678999985543 6999999999999999999998743
No 74
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=95.21 E-value=0.056 Score=63.07 Aligned_cols=35 Identities=17% Similarity=0.438 Sum_probs=29.8
Q ss_pred CCceEE-EeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003938 179 DKRLTI-FTGTKTLHLRCISREDRTVWIDALQAAKD 213 (785)
Q Consensus 179 ~~~F~I-~t~~Rt~~L~A~S~edr~~WI~AL~~a~~ 213 (785)
..-|.+ ++++|.+-|.|.+.++|+.||.+||.+..
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 455 AHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 445665 56789999999999999999999999854
No 75
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=95.05 E-value=0.014 Score=68.29 Aligned_cols=92 Identities=7% Similarity=-0.234 Sum_probs=62.9
Q ss_pred CCCCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhcccccccccccccc
Q 003938 78 GGVSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAAR 157 (785)
Q Consensus 78 ~~~~~~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~ 157 (785)
..++ ...|+|.|+...+|.||.|||++.+|.+.||+++-+
T Consensus 256 ~~~~-s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d--------------------------------------- 295 (936)
T KOG0248|consen 256 TQLT-SRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKID--------------------------------------- 295 (936)
T ss_pred hcch-HHHHHHHhHheeeccceEEEEEcCCCccccccCccc---------------------------------------
Confidence 3455 778999999889999999999999999999998542
Q ss_pred CCCcceeEEccc-eEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 003938 158 QCKPFGEIHLKV-SSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAK 212 (785)
Q Consensus 158 ~~~p~G~I~L~~-~si~~s~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~ 212 (785)
++.|.+-+.. +++. -.....+-...+-+-+++|-++...-.++||++++..-
T Consensus 296 --~~s~~~~~~~~~s~~-fqli~~t~~~~~~~~s~~lt~dw~~iL~~~iKv~~~~~ 348 (936)
T KOG0248|consen 296 --IRSVTKLEQQGAAYA-FQLITSTDKMNFMTESERTTHDWVTILSAAIKATTLRE 348 (936)
T ss_pred --ccccceeeccchhHH-hhhhhhceeEEEeccChhhhhhhHHHHHHHHHHHhccc
Confidence 1223333322 1111 00111112234445678899999999999999998763
No 76
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=94.93 E-value=0.0081 Score=69.21 Aligned_cols=93 Identities=24% Similarity=0.385 Sum_probs=65.3
Q ss_pred cceEEEEEeec-CCCCCceeeEEEEeCC-----eEEEEeecCCCccccCcccCCCceeeccchhhhhhcccccccccccc
Q 003938 82 ASVAGILYKWV-NYGKGWRSRWFVLEDG-----VLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFA 155 (785)
Q Consensus 82 ~~~~G~L~K~g-~~~K~Wk~RWFVL~~g-----~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~ 155 (785)
-..+||||--| |.+|.||+|||||-.- .++-|+.+
T Consensus 464 mkhsgylyaig~nvwkrwkkrffvlvqvsqytfamcsyrek--------------------------------------- 504 (1218)
T KOG3543|consen 464 MKHSGYLYAIGRNVWKRWKKRFFVLVQVSQYTFAMCSYREK--------------------------------------- 504 (1218)
T ss_pred cccceeehhhhhHHHHHhHhhEEEEEEhhhhhhHhhhhhhc---------------------------------------
Confidence 34689999987 5679999999999431 22223321
Q ss_pred ccCCCcceeEEccceEEEecCCCC-----Cc-eEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHc
Q 003938 156 ARQCKPFGEIHLKVSSVRASKSDD-----KR-LTIFTGTKTLHLRCISREDRTVWIDALQAAKDLF 215 (785)
Q Consensus 156 ~~~~~p~G~I~L~~~si~~s~~d~-----~~-F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~~ 215 (785)
...|..-|.|.+.+|...+..+ +. |.-+..+.|..|..+++.||.-|++|+-.|....
T Consensus 505 --kaepqel~qldgytvdytdp~pglqgg~~ffnavkegdtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 505 --KAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVKEGDTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred --ccChHHHhhccCeeeccCCCCCccccchHHHHHhccCceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 2236677888888876553332 22 4445567789999999999999999999886553
No 77
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.92 E-value=0.26 Score=45.48 Aligned_cols=52 Identities=21% Similarity=0.295 Sum_probs=39.8
Q ss_pred ceeEEccceEEEe---cCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003938 162 FGEIHLKVSSVRA---SKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKD 213 (785)
Q Consensus 162 ~G~I~L~~~si~~---s~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~ 213 (785)
..++.|..-.+.- ++.-.+.|.|.++.+++.++|+|.++..+||..|+.|++
T Consensus 45 ~~~~~L~~i~V~ni~D~~~~kNafki~t~~~s~i~qaes~~~K~eWl~~le~a~~ 99 (100)
T cd01226 45 ESTYSLNSVAVVNVKDRENAKKVLKLLIFPESRIYQCESARIKTEWFEELEQAKR 99 (100)
T ss_pred EEEEehHHeEEEecCCCcCcCceEEEEeCCccEEEEeCCHHHHHHHHHHHHHHhc
Confidence 3555565444332 222357899999999999999999999999999999974
No 78
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.89 E-value=0.14 Score=46.49 Aligned_cols=90 Identities=20% Similarity=0.195 Sum_probs=62.2
Q ss_pred ceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcc
Q 003938 83 SVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (785)
Q Consensus 83 ~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (785)
+.+|+|.|-.. +.=|.|=|.|-+++|.|-+...... | ....-+..
T Consensus 4 v~eg~lvel~~--~~rK~R~~FLFnDlLvc~~ik~~~~--------------~-------------------k~~kY~~~ 48 (96)
T cd01228 4 VKDSFLVELVE--GSRKLRHLFLFTDVLLCAKLKKTSR--------------G-------------------KHQQYDCK 48 (96)
T ss_pred cccceeeeehh--CCCcceEEEeeccEEEEEEeeeccC--------------c-------------------ccccccee
Confidence 45789988763 4568899999999999988742100 0 00222344
Q ss_pred eeEEccceEEEecCCCCCceEE-EeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 003938 163 GEIHLKVSSVRASKSDDKRLTI-FTGTKTLHLRCISREDRTVWIDALQAAK 212 (785)
Q Consensus 163 G~I~L~~~si~~s~~d~~~F~I-~t~~Rt~~L~A~S~edr~~WI~AL~~a~ 212 (785)
=.|.|..-.+... .|.+ .+++|+|.+.|.|..|+.+||++|+.-.
T Consensus 49 w~IPL~dl~~~~~-----~~~~~~~~~KSf~~~asS~~Er~eW~~hI~~~~ 94 (96)
T cd01228 49 WYIPLADLSFPSE-----PFRIHNKNGKSYTFLLSSDYERSEWRESIQKLQ 94 (96)
T ss_pred EEEEhHHheecch-----hhhccccCCceEEEEecCHHHHHHHHHHHHHHh
Confidence 5677766555422 1444 5689999999999999999999997653
No 79
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=93.36 E-value=0.016 Score=69.19 Aligned_cols=95 Identities=21% Similarity=0.385 Sum_probs=68.5
Q ss_pred CCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCC
Q 003938 80 VSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQC 159 (785)
Q Consensus 80 ~~~~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~ 159 (785)
+...++|||..+-..-.||++=|.|..+-+|++||++.++-
T Consensus 922 ~e~qLsg~LlrkfknssgwqkLwvvft~fcl~fyKS~qD~~--------------------------------------- 962 (1036)
T KOG3531|consen 922 VENQLSGYLLRKFKNSSGWQKLWVVFTNFCLFFYKSHQDSE--------------------------------------- 962 (1036)
T ss_pred HHhhhhHHHHHHhhccccceeeeeeecceeeEeeccccccc---------------------------------------
Confidence 34558899976544445899999999999999999987521
Q ss_pred CcceeEEccceEEEec-C----CCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003938 160 KPFGEIHLKVSSVRAS-K----SDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDL 214 (785)
Q Consensus 160 ~p~G~I~L~~~si~~s-~----~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~ 214 (785)
+..++.|-+.++... . ..+.-|.+.-..-.|+|+|++.-.-+.||+.|+.+-..
T Consensus 963 -~laslPlLgysvs~P~~~d~i~K~~vfkl~fk~hvyffraes~yt~~rw~evi~~a~~s 1021 (1036)
T KOG3531|consen 963 -PLASLPLLGYSVSIPAEPDPIQKDYVFKLKFKSHVYFFRAESYYTFERWMEVITDAPSS 1021 (1036)
T ss_pred -ccccccccccccCCCCCCCCcchhheeeeehhhhHHHHhhhhhhhhhhHHHHhhcCCcc
Confidence 333444444443322 1 22345667777788999999999999999999988543
No 80
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.71 E-value=2 Score=41.78 Aligned_cols=53 Identities=13% Similarity=0.335 Sum_probs=40.7
Q ss_pred ceeEEccceEEEec-CCCCCceEEEeC--CeEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003938 162 FGEIHLKVSSVRAS-KSDDKRLTIFTG--TKTLHLRCISREDRTVWIDALQAAKDL 214 (785)
Q Consensus 162 ~G~I~L~~~si~~s-~~d~~~F~I~t~--~Rt~~L~A~S~edr~~WI~AL~~a~~~ 214 (785)
+..|.+..-.+.++ ..|+++|.|.+. ..+|.|+|.|.+.++.|++.|+.....
T Consensus 62 K~~ikls~lglte~v~gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~iL~~ 117 (133)
T cd01227 62 KQSLKMTAVGITENVKGDTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKVLTS 117 (133)
T ss_pred eeeEEeecccccccCCCCccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 45566655555554 456789998765 369999999999999999999988654
No 81
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=91.10 E-value=0.21 Score=60.10 Aligned_cols=94 Identities=20% Similarity=0.202 Sum_probs=71.0
Q ss_pred CCCCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhcccccccccccccc
Q 003938 78 GGVSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAAR 157 (785)
Q Consensus 78 ~~~~~~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~ 157 (785)
+.++...+|||.-+|..-| =|-+|.++.+--||+..+=+ +|.
T Consensus 188 pp~pP~raG~lelrg~kak----~f~~vsp~~vqL~knlq~f~-------------lgi--------------------- 229 (1186)
T KOG1117|consen 188 PPVPPPRAGWLELRGFKAK----LFVAVSPERVQLYKNLQSFP-------------LGI--------------------- 229 (1186)
T ss_pred CCCCCCCccchhccccccc----eeEEecCceeeeeccccccc-------------CCc---------------------
Confidence 3567788999988774332 34567899999999754311 111
Q ss_pred CCCcceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003938 158 QCKPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDL 214 (785)
Q Consensus 158 ~~~p~G~I~L~~~si~~s~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~ 214 (785)
-.-.|.+.++.+.+. +.+.|.+.|+-|.|-|.|++..+|+.|+.|+|.+.+.
T Consensus 230 ---git~I~m~~~nvk~v--dr~sfdl~Tp~r~fsftaese~erq~w~ea~q~siAe 281 (1186)
T KOG1117|consen 230 ---GITFIYMEVSNVKEV--DRRSFDLNTPYREFSFTAESETERQIWGEAPQPSIAE 281 (1186)
T ss_pred ---eeEEEeccccccccc--ccceeccCCceeeeeeeeccchhhhhhhhccCccccc
Confidence 234577888888644 4488999999999999999999999999999988764
No 82
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.56 E-value=1.3 Score=41.48 Aligned_cols=34 Identities=32% Similarity=0.593 Sum_probs=28.3
Q ss_pred CCCCceEEEeCC----eEEEEEcCCHHHHHHHHHHHHH
Q 003938 177 SDDKRLTIFTGT----KTLHLRCISREDRTVWIDALQA 210 (785)
Q Consensus 177 ~d~~~F~I~t~~----Rt~~L~A~S~edr~~WI~AL~~ 210 (785)
..++.|+|+-+. ++++|-|+|.++++.|+..|+.
T Consensus 77 ~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 77 LEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred ccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 456778876553 6999999999999999999974
No 83
>PF15408 PH_7: Pleckstrin homology domain
Probab=90.35 E-value=0.13 Score=45.78 Aligned_cols=32 Identities=22% Similarity=0.431 Sum_probs=25.4
Q ss_pred EEEEEeecCCCCCceeeEEEEeCCeEEEEeecCC
Q 003938 85 AGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGP 118 (785)
Q Consensus 85 ~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~ 118 (785)
+||||.--. ..-|+|+.+|++..|.+|..++.
T Consensus 1 EGYLY~~E~--~si~rRF~~L~~K~~~~~~~KGG 32 (104)
T PF15408_consen 1 EGYLYRDED--SSIQRRFVMLRSKQFNMYEDKGG 32 (104)
T ss_pred CCeEEEecc--chHHHHHHhhhhceeEEecccCC
Confidence 589987532 23789999999999999998764
No 84
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=89.16 E-value=2.3 Score=39.90 Aligned_cols=79 Identities=19% Similarity=0.232 Sum_probs=56.6
Q ss_pred CCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcceeEEccceEEEe-
Q 003938 96 KGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVRA- 174 (785)
Q Consensus 96 K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G~I~L~~~si~~- 174 (785)
..=+.|||||-.++|........ .. +-.-.|.+.|+.-+|..
T Consensus 26 qe~~eRyLvLFp~~LlilS~s~r---------~s----------------------------Gf~yqGkLPL~~i~v~~l 68 (111)
T cd01225 26 EEKRERYLVLFPNVLLMLSASPR---------MS----------------------------GFIYQGKLPLTGIIVTRL 68 (111)
T ss_pred cccceeEEEEcCceEEEEEcCCC---------cc----------------------------ceEEeeeecccccEEech
Confidence 34578999999999988774211 01 11245888888888773
Q ss_pred --cCCCCCceEEEeCC-eEEEEEcCCHHHHHHHHHHHHHH
Q 003938 175 --SKSDDKRLTIFTGT-KTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 175 --s~~d~~~F~I~t~~-Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
+....+.|.|..+. -+..+.|.+.+|.++||.-|+.-
T Consensus 69 Ed~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~~~ 108 (111)
T cd01225 69 EDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLNAN 108 (111)
T ss_pred HhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHHhh
Confidence 12334678887665 67888899999999999999873
No 85
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.68 E-value=4 Score=38.72 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=26.6
Q ss_pred eEEEe--CCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003938 182 LTIFT--GTKTLHLRCISREDRTVWIDALQAAKDL 214 (785)
Q Consensus 182 F~I~t--~~Rt~~L~A~S~edr~~WI~AL~~a~~~ 214 (785)
|.|.. +.-.|.|.|.|++++..||+||..|++-
T Consensus 79 f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~a~sn 113 (116)
T cd01223 79 FYLAHKQGKTGFTFYFKTEHLRKKWLKALEMAMSN 113 (116)
T ss_pred EEEEecCCCccEEEEeCCHHHHHHHHHHHHHHHhc
Confidence 44543 3367999999999999999999999753
No 86
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=82.51 E-value=0.019 Score=63.13 Aligned_cols=79 Identities=27% Similarity=0.482 Sum_probs=61.6
Q ss_pred CceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcceeEEccceEEE--e
Q 003938 97 GWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVR--A 174 (785)
Q Consensus 97 ~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G~I~L~~~si~--~ 174 (785)
.|++-||||.+..|.||........ ...-|+|+|..|.-. .
T Consensus 34 ~~~k~~~~~~~~~~~~~~d~~A~~~-------------------------------------~~L~~~~~LR~C~~v~e~ 76 (593)
T KOG4807|consen 34 QWKKHWFVLTDSSLKYYRDSTAEEA-------------------------------------DELDGEIDLRSCTDVTEY 76 (593)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhc-------------------------------------ccCCccccHHHHHHHHHH
Confidence 4999999999999999996432110 013388999888732 2
Q ss_pred cCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHH
Q 003938 175 SKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAK 212 (785)
Q Consensus 175 s~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~ 212 (785)
+...+..|.|++-+-.|.|.|-+.--+..||.|++...
T Consensus 77 a~q~nY~~~i~~~~~~~tL~~~~s~Ir~~~~~A~~kT~ 114 (593)
T KOG4807|consen 77 AVQRNYGFQIHTKDAVYTLSAMTSGIRRNWIEALRKTV 114 (593)
T ss_pred HHHhccceeecccchhhhhHHHHHHHHHHHHHHHHhcc
Confidence 24556789999999999999999999999999998553
No 87
>KOG1170 consensus Diacylglycerol kinase [Lipid transport and metabolism]
Probab=76.57 E-value=0.12 Score=61.66 Aligned_cols=90 Identities=17% Similarity=0.251 Sum_probs=67.1
Q ss_pred eEEEEEeecCCCCCceeeEEEEeCCe-EEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcc
Q 003938 84 VAGILYKWVNYGKGWRSRWFVLEDGV-LSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPF 162 (785)
Q Consensus 84 ~~G~L~K~g~~~K~Wk~RWFVL~~g~-L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~ 162 (785)
..|-+.++.|-.-.|+.|+|.+++.. +.|-++... ..+
T Consensus 4 ~rgl~~~~~ne~Ea~k~r~~~~k~~~~~~vakTa~g-----------------------------------------~~~ 42 (1099)
T KOG1170|consen 4 TRGLDNDVDNEREAWKQSILRAKDRMPEKVAKTASG-----------------------------------------PLF 42 (1099)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHHHHHhccCC-----------------------------------------ccH
Confidence 45677777777788999999998876 444443211 133
Q ss_pred eeEEccceEEEecC--CCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003938 163 GEIHLKVSSVRASK--SDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDL 214 (785)
Q Consensus 163 G~I~L~~~si~~s~--~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~ 214 (785)
..+.+..+.+.++. .....|+|+|+-|+..++|++..+|..||.|++.....
T Consensus 43 ~~~d~t~a~~~eSs~~n~~~sf~vi~~~rk~r~~adn~ke~e~wi~~~kt~q~~ 96 (1099)
T KOG1170|consen 43 ALLDLTSAHVAESSTNNPRPSFCVITPVRKHRLCADNRKEMEKWINQSKTPQHL 96 (1099)
T ss_pred HHHhcccccccccccCCCCCCeeEecccHHhhhhccchhHHHHhhccccchhhc
Confidence 55566666666553 34567999999999999999999999999999988654
No 88
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=74.22 E-value=2.1 Score=47.92 Aligned_cols=101 Identities=19% Similarity=0.224 Sum_probs=57.7
Q ss_pred eEEEEEeec--CCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCc
Q 003938 84 VAGILYKWV--NYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKP 161 (785)
Q Consensus 84 ~~G~L~K~g--~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p 161 (785)
.=|||.++. +..+.|++-+.+|.+.-|..|.+-...+-..+.+ .++...-.-|++... ..+
T Consensus 294 HiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~keaws~P----~~~ypLvaTRLvhsg---------~~~---- 356 (506)
T KOG3551|consen 294 HIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKEAWSRP----RHTYPLVATRLVHSG---------SGK---- 356 (506)
T ss_pred hhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHHHhcCh----hhhhhhhhhhheecC---------CCC----
Confidence 449999986 3346699999999998888888743211111110 000000000000000 000
Q ss_pred ceeEEccceEEEecCCCCCceEEEeCC----eEEEEEcCCHHHHHHHHHHHHHH
Q 003938 162 FGEIHLKVSSVRASKSDDKRLTIFTGT----KTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 162 ~G~I~L~~~si~~s~~d~~~F~I~t~~----Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
|.+ ...-+-.|.+.||+ +|+.|+++|..|+..|..+|-.-
T Consensus 357 -~s~---------~~g~~lsFa~RtGTrqGV~thlfrvEThrdLa~WtRslVqG 400 (506)
T KOG3551|consen 357 -GSV---------IKGLTLSFATRTGTRQGVETHLFRVETHRELAAWTRSLVQG 400 (506)
T ss_pred -CCC---------cCCceEEEEEecccccceEEEEEEeccHHHHHHHHHHHHHH
Confidence 100 01112358888887 58999999999999999987543
No 89
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=73.12 E-value=2.3 Score=50.34 Aligned_cols=37 Identities=30% Similarity=0.553 Sum_probs=30.1
Q ss_pred cceEEEEEeec--CCC-CCceeeEEEEeCCeEEEEeecCC
Q 003938 82 ASVAGILYKWV--NYG-KGWRSRWFVLEDGVLSYYKIHGP 118 (785)
Q Consensus 82 ~~~~G~L~K~g--~~~-K~Wk~RWFVL~~g~L~YYk~~~~ 118 (785)
..++|||++.. +++ ..|++=||||.|..|+.|.++..
T Consensus 562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~ 601 (638)
T KOG1738|consen 562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRV 601 (638)
T ss_pred chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhh
Confidence 45789999875 333 34999999999999999998764
No 90
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=67.48 E-value=6.2 Score=50.01 Aligned_cols=56 Identities=27% Similarity=0.398 Sum_probs=46.2
Q ss_pred ceeEEccceEEEecCCCCCceEEE-eC---CeEEEEEcCCHHHHHHHHHHHHHHHHHccc
Q 003938 162 FGEIHLKVSSVRASKSDDKRLTIF-TG---TKTLHLRCISREDRTVWIDALQAAKDLFPR 217 (785)
Q Consensus 162 ~G~I~L~~~si~~s~~d~~~F~I~-t~---~Rt~~L~A~S~edr~~WI~AL~~a~~~~~~ 217 (785)
.++|.|..-.+++...|.+.|.|+ +. -..|.|.|.|.+||+.||+-|+.++...++
T Consensus 667 spVisL~~livRevAtd~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~ 726 (1167)
T KOG3520|consen 667 SPVISLQKLIVREVATDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPR 726 (1167)
T ss_pred CCceehHHHHHHHHhccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCc
Confidence 467788777666667788887754 43 478999999999999999999999998876
No 91
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=66.28 E-value=7.1 Score=45.99 Aligned_cols=95 Identities=16% Similarity=0.112 Sum_probs=62.5
Q ss_pred CCcceEEEEEeecCCCCCceeeEEEE---eCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccc
Q 003938 80 VSASVAGILYKWVNYGKGWRSRWFVL---EDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAA 156 (785)
Q Consensus 80 ~~~~~~G~L~K~g~~~K~Wk~RWFVL---~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~ 156 (785)
.+..+.+.|.+--..+++|..-|++. ++-+++-|....+ +
T Consensus 495 ~~~~~~s~l~~~~~~~~~g~~a~~~vP~~d~~~~~~Yg~~qD--v----------------------------------- 537 (623)
T KOG4424|consen 495 KENVICSHLKYMEAAGKTGILAWSVVPKSDPLVDYSYGSPQD--V----------------------------------- 537 (623)
T ss_pred CCceehhhHHHHhhcCccceeeeeeccCCCCccccccCCccc--c-----------------------------------
Confidence 34466677766555678999999999 4467777775332 1
Q ss_pred cCCCcceeEEccceEEEec-----CCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003938 157 RQCKPFGEIHLKVSSVRAS-----KSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDL 214 (785)
Q Consensus 157 ~~~~p~G~I~L~~~si~~s-----~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~ 214 (785)
.....|.|.++.+... ..-...|.++.....+||.|+|++-.+.|++-|..|..-
T Consensus 538 ---~a~~~iPl~~~~v~~pe~~~~~D~~~~~k~~~s~~~~~~~a~~~q~qq~wl~~l~~A~~~ 597 (623)
T KOG4424|consen 538 ---RAQATIPLPGVEVTIPEFVRREDLFHVFKLVQSHLSWHLAADDEQLQQRWLEVLLLAVSG 597 (623)
T ss_pred ---ccccccccCccccCCCcccccchhcchhhhhhhcceeeeccCCHHHHHHHHHHHHhhhcc
Confidence 1234455555554311 111122345556789999999999999999999988643
No 92
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=64.44 E-value=8.3 Score=37.49 Aligned_cols=34 Identities=21% Similarity=0.077 Sum_probs=14.0
Q ss_pred ceEEEEEeecCCCCCceeeEEEEeCCeEEEEeec
Q 003938 83 SVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIH 116 (785)
Q Consensus 83 ~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~ 116 (785)
++.|-|.|++.....|-.=-+.|=|..|..-|.+
T Consensus 2 i~~G~L~Rk~~~~~~~~di~~~LFDh~Lll~K~k 35 (135)
T PF15405_consen 2 IYKGDLKRKGDNSFNWVDIHVYLFDHYLLLTKPK 35 (135)
T ss_dssp ---------------S-EEEEEEESSEEEEEEEE
T ss_pred ccccccccccccccccceeEEEeeccEEEEEEEE
Confidence 4689999999888889877778888888877764
No 93
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=64.18 E-value=1.2 Score=51.69 Aligned_cols=53 Identities=23% Similarity=0.331 Sum_probs=38.8
Q ss_pred cceeEEccceEEEecCCCC----CceEEE---eCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003938 161 PFGEIHLKVSSVRASKSDD----KRLTIF---TGTKTLHLRCISREDRTVWIDALQAAKD 213 (785)
Q Consensus 161 p~G~I~L~~~si~~s~~d~----~~F~I~---t~~Rt~~L~A~S~edr~~WI~AL~~a~~ 213 (785)
|.+.|.|++|.+.+...+. ..|.|. .++-.++|||++++.-.+||.|-+.|..
T Consensus 400 p~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~WMAaCrLASK 459 (664)
T KOG3727|consen 400 PAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARWMAACRLASK 459 (664)
T ss_pred CCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHHHHHhhHhhc
Confidence 6677888888776554332 234433 3578899999999999999999888743
No 94
>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]
Probab=63.25 E-value=18 Score=42.79 Aligned_cols=92 Identities=20% Similarity=0.190 Sum_probs=64.3
Q ss_pred CCcceEEEEEeecCCCCCceeeEEEEeC-CeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccC
Q 003938 80 VSASVAGILYKWVNYGKGWRSRWFVLED-GVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQ 158 (785)
Q Consensus 80 ~~~~~~G~L~K~g~~~K~Wk~RWFVL~~-g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~ 158 (785)
....+.|.|.|+.+.+ =|+|.|+|.+ +.|.|+.....
T Consensus 449 ~~i~k~~~l~k~~~lf--~rkr~lllTn~~rll~~~~~~~---------------------------------------- 486 (604)
T KOG0592|consen 449 SLILKEGALEKRQGLF--ARKRMLLLTNGPRLLYVDPQNL---------------------------------------- 486 (604)
T ss_pred hhHHhHHHHHhhhhhh--hceeEEEecCCCeEEEEecccc----------------------------------------
Confidence 5566788888876555 4679999966 77888873211
Q ss_pred CCcceeEEccceEEEecCCCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHcc
Q 003938 159 CKPFGEIHLKVSSVRASKSDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFP 216 (785)
Q Consensus 159 ~~p~G~I~L~~~si~~s~~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~~~ 216 (785)
..+|+|.++.+... .....+.|.|+|+.|+|+|-- =......|-+||..++...+
T Consensus 487 -~lk~eip~~~~~~~-e~~n~~~~~i~TP~k~~~l~d-~~~~as~w~~ai~~~~~~~~ 541 (604)
T KOG0592|consen 487 -VLKGEIPWSPDLRV-ELKNSSTFFIHTPNKVYYLED-PEQRASVWCKAIETVRKRYS 541 (604)
T ss_pred -eeccccccCcccce-eeccCcceEEECCccceeccC-cccchhHHHHhhhhhhhccc
Confidence 14577777663332 234567899999999999954 44567889999999955543
No 95
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=55.58 E-value=16 Score=43.35 Aligned_cols=21 Identities=43% Similarity=0.661 Sum_probs=19.6
Q ss_pred eEEEEEcCCHHHHHHHHHHHH
Q 003938 189 KTLHLRCISREDRTVWIDALQ 209 (785)
Q Consensus 189 Rt~~L~A~S~edr~~WI~AL~ 209 (785)
-.|.|+|+|..||++||.||.
T Consensus 571 ~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 571 TELLLSAESQSDRQRWISALR 591 (695)
T ss_pred eeeeecCCchHHHHHHHHhcC
Confidence 469999999999999999998
No 96
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=50.78 E-value=7.8 Score=47.36 Aligned_cols=101 Identities=27% Similarity=0.367 Sum_probs=72.8
Q ss_pred CCCcceEEEEEeecCCCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccC
Q 003938 79 GVSASVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQ 158 (785)
Q Consensus 79 ~~~~~~~G~L~K~g~~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~ 158 (785)
+-..+..|-|.|-.. |+=|+|-|.|-..+|.|-.. +++ -+ +.
T Consensus 747 ~rE~ir~g~llK~sk--kgLqqrmfFLfsdillytsk-~~~-------~~----------------------------~~ 788 (1036)
T KOG3531|consen 747 GREFIRSGCLLKLSK--KGLQQRMFFLFSDILLYTSK-GPD-------VQ----------------------------KC 788 (1036)
T ss_pred chhhhhcCCchhhcc--ccchhhhhhhhhhhheeccC-CCC-------hh----------------------------he
Confidence 556678899999875 77999999998888877543 321 01 11
Q ss_pred CCcceeEEccceEEEecC---CCCCceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHHHcccc
Q 003938 159 CKPFGEIHLKVSSVRASK---SDDKRLTIFTGTKTLHLRCISREDRTVWIDALQAAKDLFPRL 218 (785)
Q Consensus 159 ~~p~G~I~L~~~si~~s~---~d~~~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~~~~~~ 218 (785)
....|.|.+. -.+..+. +-+..|+|.++.++.+..|.++.+..+|+..++.++...++.
T Consensus 789 fri~g~lP~~-l~~en~en~~s~p~~~ti~~~qk~i~vsast~~~sk~~~~~r~~~i~~~~k~ 850 (1036)
T KOG3531|consen 789 FRINGDLPLT-LTMENSENEWSVPHCFTISGAQKQIYVSASTRRESKKWEFDRRKAIDLAPKK 850 (1036)
T ss_pred eEeccCCceE-eeeecccccccCCceEEEeccceEEEEeccchhhhhhhhhccchhhhhcccc
Confidence 2244666665 3333221 224789999999999999999999999999999998887753
No 97
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=46.65 E-value=80 Score=29.48 Aligned_cols=41 Identities=5% Similarity=0.110 Sum_probs=31.1
Q ss_pred eEEEecCCCCCceEEEe-CCeEEEEEcCCHHHHHHHHHHHHH
Q 003938 170 SSVRASKSDDKRLTIFT-GTKTLHLRCISREDRTVWIDALQA 210 (785)
Q Consensus 170 ~si~~s~~d~~~F~I~t-~~Rt~~L~A~S~edr~~WI~AL~~ 210 (785)
++--+-+...+.|.+.. +.-.|.|.|.+.++++.|+..|+.
T Consensus 65 tt~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q~~SWla~Ir~ 106 (107)
T cd01231 65 CTRLEMPDNLYTFVLKVDDNTDIIFEVGDEQQLNSWLAELRY 106 (107)
T ss_pred cccccccCcccEEEEEecCCceEEEEcCCHHHHHHHHHHHhc
Confidence 33333455678898765 445799999999999999999875
No 98
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=45.72 E-value=1.2e+02 Score=30.06 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003938 187 GTKTLHLRCISREDRTVWIDALQAAKDL 214 (785)
Q Consensus 187 ~~Rt~~L~A~S~edr~~WI~AL~~a~~~ 214 (785)
+.++|+||+.+.+-+...|+.++...+.
T Consensus 129 pE~vfqLCcS~~E~k~~flK~Irsilre 156 (160)
T cd01255 129 PEKVFVLCCSTAESRNAFLKTIRSILRE 156 (160)
T ss_pred CcceEEEecCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999998664
No 99
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=39.05 E-value=49 Score=31.27 Aligned_cols=33 Identities=15% Similarity=0.375 Sum_probs=29.1
Q ss_pred ceEEEeCCeEEEEEcCCHHHHHHHHHHHHHHHH
Q 003938 181 RLTIFTGTKTLHLRCISREDRTVWIDALQAAKD 213 (785)
Q Consensus 181 ~F~I~t~~Rt~~L~A~S~edr~~WI~AL~~a~~ 213 (785)
-|-|.|..+.+.|.|+|..+.+.|+++|+..-.
T Consensus 72 yfgL~T~~G~vEfec~~~~~~k~W~~gI~~mL~ 104 (110)
T PF08458_consen 72 YFGLKTAQGVVEFECDSQREYKRWVQGIQHMLS 104 (110)
T ss_pred EEEEEecCcEEEEEeCChhhHHHHHHHHHHHHH
Confidence 356899999999999999999999999987644
No 100
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=34.48 E-value=1.3 Score=57.69 Aligned_cols=102 Identities=16% Similarity=0.286 Sum_probs=64.8
Q ss_pred CCCcceEEEEEee---cC-----CCCCceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccc
Q 003938 79 GVSASVAGILYKW---VN-----YGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSH 150 (785)
Q Consensus 79 ~~~~~~~G~L~K~---g~-----~~K~Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~ 150 (785)
+....++|+||.+ +. ..+.|..=|++|..+.|.+||+.+.+...+- .+
T Consensus 2296 ~~w~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve-------~~----------------- 2351 (2473)
T KOG0517|consen 2296 SAWRQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVE-------LL----------------- 2351 (2473)
T ss_pred cHHHHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccch-------hh-----------------
Confidence 5566789999764 21 2367999999999999999998654321100 00
Q ss_pred cccccccCCCcceeE--EccceEEEec---CCCCCceEEEe-CCeEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003938 151 RLGFAARQCKPFGEI--HLKVSSVRAS---KSDDKRLTIFT-GTKTLHLRCISREDRTVWIDALQAAKDL 214 (785)
Q Consensus 151 ~~~~~~~~~~p~G~I--~L~~~si~~s---~~d~~~F~I~t-~~Rt~~L~A~S~edr~~WI~AL~~a~~~ 214 (785)
.+|+. .+..+.|... ......|.+.. +++-|.|+|.+.++|+.|+.++..++..
T Consensus 2352 ----------~r~e~~lel~~a~i~~a~dy~kkk~v~~l~~~~gae~llq~k~ee~m~sWL~~~a~~~~~ 2411 (2473)
T KOG0517|consen 2352 ----------VRGEPPLELDMAAIEVASDYHKKKHVFLLQLPPGAEHLLQAKDEEEMESWLRALAVKRAE 2411 (2473)
T ss_pred ----------ccCCcchhcchhHHHHHHHHHHHhHhhhhcCCchHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 11222 2223332211 11223455544 5789999999999999999999888764
No 101
>PF14254 DUF4348: Domain of unknown function (DUF4348); PDB: 3SBU_A.
Probab=32.91 E-value=49 Score=35.81 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=24.8
Q ss_pred eeeeeeeeeeeceeeEeecceEE-EEc-CCCceEEEEEeecC
Q 003938 566 KVTTSIYNIILGKIYCDHYGTMR-IRG-SGNYSCKLKFKEQS 605 (785)
Q Consensus 566 ~p~~~i~nii~G~~~~e~~G~~~-I~~-~tg~~~~l~F~~~~ 605 (785)
.|.-.|+||+.|+.|.+-..++. |++ .+|+.-+|.|+.+|
T Consensus 225 lP~~~i~NI~YGQky~~s~~KIl~~rGi~NG~e~~l~Fk~~~ 266 (273)
T PF14254_consen 225 LPKGKIYNINYGQKYTESNQKILVFRGIANGLETELYFKKRG 266 (273)
T ss_dssp --SSEEEEEESS----T-SEEEEEEEESSS--EEEEEEEEET
T ss_pred CCccceeeeecccccCCCCceEEEEEeecCceeEEEEEEEcC
Confidence 58899999999999999555543 456 78999999998753
No 102
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=30.22 E-value=76 Score=37.12 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=49.4
Q ss_pred ceeeEEEEeCCeEEEEeecCCCccccCcccCCCceeeccchhhhhhccccccccccccccCCCcceeEEccceEEEec--
Q 003938 98 WRSRWFVLEDGVLSYYKIHGPDKILMSPARDNNVRVIGEDSIRFMRKANWSSHRLGFAARQCKPFGEIHLKVSSVRAS-- 175 (785)
Q Consensus 98 Wk~RWFVL~~g~L~YYk~~~~~~~~~~~~~~~~~r~ig~~~~~~~~~~~~~~~~~~~~~~~~~p~G~I~L~~~si~~s-- 175 (785)
=+-|||+|-..+|.++.-..+ |+ ...-.|.+.+.+..|...
T Consensus 325 ~~dRy~~LF~~~llflsvs~r----Ms---------------------------------~fIyegKlp~tG~iV~klEd 367 (661)
T KOG2070|consen 325 EKDRYLLLFPNVLLFLSVSPR----MS---------------------------------GFIYEGKLPTTGMIVTKLED 367 (661)
T ss_pred hhhheeeeccceeeeeEeccc----cc---------------------------------hhhhccccccceeEEeehhh
Confidence 569999999988888774221 10 001224555555555432
Q ss_pred -CCCCCceEEEeCC-eEEEEEcCCHHHHHHHHHHHHHH
Q 003938 176 -KSDDKRLTIFTGT-KTLHLRCISREDRTVWIDALQAA 211 (785)
Q Consensus 176 -~~d~~~F~I~t~~-Rt~~L~A~S~edr~~WI~AL~~a 211 (785)
....++|.|...+ -.....+....|.++|+++|+.-
T Consensus 368 te~~~nafeis~~ti~rIv~~c~~~~~l~~wve~ln~~ 405 (661)
T KOG2070|consen 368 TENHRNAFEISGSTIERIVVSCNNQQDLQEWVEHLNKQ 405 (661)
T ss_pred hhcccccccccccchhheeeccCChHHHHHHHHHhhhc
Confidence 2334678776554 33556789999999999999864
No 103
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=30.08 E-value=29 Score=40.08 Aligned_cols=31 Identities=19% Similarity=0.043 Sum_probs=24.5
Q ss_pred CCcceEEEEEeecCCCC--CceeeEEEEeCCeE
Q 003938 80 VSASVAGILYKWVNYGK--GWRSRWFVLEDGVL 110 (785)
Q Consensus 80 ~~~~~~G~L~K~g~~~K--~Wk~RWFVL~~g~L 110 (785)
....+.|+++-+.+.++ .|+++|.+|..|.+
T Consensus 6 ~~~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs~ 38 (429)
T KOG4047|consen 6 SCLVKDGVPDNHRNKFKVKNVRDDGAELGSGSM 38 (429)
T ss_pred CcccccCccchhhhhhccccccccceeeecccc
Confidence 34578899988877764 89999999987653
No 104
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=28.21 E-value=1.2e+02 Score=28.43 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccc
Q 003938 266 QNQLNALQRKHIMLLGTLRQLETEKMELEATVVDET 301 (785)
Q Consensus 266 ~~~l~~l~~~~~~ll~~l~~Le~ek~~le~t~~~e~ 301 (785)
++.+..|+++...|.+...+||.|+.=|-+++..|.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~ 101 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTLASPEQ 101 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHH
Confidence 466777788888888888999988876666664433
No 105
>PF09783 Vac_ImportDeg: Vacuolar import and degradation protein; InterPro: IPR018618 Members of this family are involved in the negative regulation of gluconeogenesis. They are required for both proteosome-dependent and vacuolar catabolite degradation of fructose-1,6-bisphosphatase (FBPase), where they probably regulate FBPase targeting from the FBPase-containing vesicles to the vacuole [, ].
Probab=27.63 E-value=2e+02 Score=29.44 Aligned_cols=55 Identities=22% Similarity=0.275 Sum_probs=33.6
Q ss_pred eeeeeeeeeeceeeEeecceEEEEcCC-CceEEEEEeecCccCCCCceEEEEEEeCCCCcEEEEEEEEEcceE
Q 003938 567 VTTSIYNIILGKIYCDHYGTMRIRGSG-NYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLVGKWDEAM 638 (785)
Q Consensus 567 p~~~i~nii~G~~~~e~~G~~~I~~~t-g~~~~l~F~~~~~~~~~~~~V~G~V~~~~~g~~~~~i~G~Wd~~l 638 (785)
+.+.|++|=+-.++ +.|.|.|.+-+ ...-..+| ++|+|.+ .++...+.++|....
T Consensus 22 V~V~i~~VDl~~~~--l~G~l~i~glt~~~p~itTf------------FeGEII~---~~~~~F~T~~W~a~~ 77 (176)
T PF09783_consen 22 VKVTIKTVDLPNSH--LCGYLEIKGLTDDHPEITTF------------FEGEIIG---FNKHSFLTEKWGANE 77 (176)
T ss_pred EEEEEEEecCCcCE--EEEEEEEecCCCCCCcEEEE------------EeeEEec---CCCCceeccccCCCc
Confidence 34455555443333 67999999844 44444455 7888886 345556666887654
No 106
>cd05135 RasGAP_RASAL Ras GTPase activating-like protein (RASAL) or RASAL1 is a member of the GAP1 family, and a Ca2+ sensor responding in-phase to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. It contains a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. RASAL, like Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), is a cytosolic protein that undergoes a rapid translocation to the plasma membrane in response to receptor-mediated elevation in the concentration of intracellular free Ca2+, a translocation that activates its ability to function as a RasGAP. However, unlike RASAL4, RASAL undergoes an oscillatory translocation to the plasma membrane that occurs in synchrony with repetitive Ca2+ spikes.
Probab=26.98 E-value=18 Score=40.49 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=18.8
Q ss_pred cceEEEEEeecC-----CCC-CceeeEEEEe
Q 003938 82 ASVAGILYKWVN-----YGK-GWRSRWFVLE 106 (785)
Q Consensus 82 ~~~~G~L~K~g~-----~~K-~Wk~RWFVL~ 106 (785)
..++|+++|+.. ..+ +||+|||.|.
T Consensus 303 ~~~eg~~~~r~~~~~~~~~~~~fkk~~f~l~ 333 (333)
T cd05135 303 TVKEGYLHKRKTEGPQLLTRFAFKKRYFWLS 333 (333)
T ss_pred hhhhhHhhhccccCCCCcccccccceeeecC
Confidence 468899999752 223 6999999883
No 107
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=25.30 E-value=56 Score=32.78 Aligned_cols=25 Identities=24% Similarity=0.484 Sum_probs=20.2
Q ss_pred CCCCCCCCCCeEEEEcCCCCeEEEE
Q 003938 499 CKPFNPLLGETYEADYPDKGLRFFS 523 (785)
Q Consensus 499 ~KPfNPlLGETfe~~~~d~g~r~ia 523 (785)
+==|.|+.|+||.+..-++|..|++
T Consensus 85 ~cnF~pipG~iYhLY~r~~G~~ylS 109 (159)
T PF10504_consen 85 KCNFEPIPGQIYHLYRRENGQDYLS 109 (159)
T ss_pred ccCceecCCCEEEEEECCCCCEEEE
Confidence 3458999999999987667877776
No 108
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=25.27 E-value=2.1e+02 Score=30.52 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 003938 261 EHSDLQNQLNALQRKHIMLLGTLRQLETEKMEL 293 (785)
Q Consensus 261 e~s~l~~~l~~l~~~~~~ll~~l~~Le~ek~~l 293 (785)
|-....+.|..+++++..|-..|++++.++.+.
T Consensus 47 Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~ 79 (230)
T PF10146_consen 47 ERMAHVEELRQINQDINTLENIIKQAESERNKR 79 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444777777777777777777776665544
No 109
>cd05394 RasGAP_RASA2 RASA2 (or GAP1(m)) is a member of the GAP1 family of Ras GTPase-activating proteins that includes GAP1_IP4BP (or RASA3), CAPRI, and RASAL. In vitro, RASA2 has been shown to bind inositol 1,3,4,5-tetrakisphosphate (IP4), the water soluble inositol head group of the lipid second messenger phosphatidylinositol 3,4,5-trisphosphate (PIP3). In vivo studies also demonstrated that RASA2 binds PIP3, and it is recruited to the plasma membrane following agonist stimulation of PI 3-kinase. Furthermore, the membrane translocation is a consequence of the ability of its pleckstrin homology (PH) domain to bind PIP3.
Probab=23.34 E-value=17 Score=40.34 Aligned_cols=26 Identities=31% Similarity=0.652 Sum_probs=19.9
Q ss_pred cceEEEEEeecC----C-CCCceeeEEEEeC
Q 003938 82 ASVAGILYKWVN----Y-GKGWRSRWFVLED 107 (785)
Q Consensus 82 ~~~~G~L~K~g~----~-~K~Wk~RWFVL~~ 107 (785)
..++|+|.|+.. . .|.||+|||.|.+
T Consensus 283 ~~~e~~~~~r~~~~~~~~~~~~kkr~~~l~~ 313 (313)
T cd05394 283 HLKEGEMYKRAQGRTRIGKKNFKKRWFCLTS 313 (313)
T ss_pred hhHHHHHHhhccCCCccccccchhheeecCC
Confidence 568999999751 1 2579999999863
No 110
>cd05134 RasGAP_RASA3 RASA3 (or GAP1_IP4BP) is a member of the GAP1 family and has been shown to specifically bind 1,3,4,5-tetrakisphosphate (IP4). Thus, RASA3 may function as an IP4 receptor. The members of GAP1 family are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin-homology domain that is associated with a Bruton's tyrosine kinase motif. Purified RASA3 stimulates GAP activity on Ras with about a five-fold lower potency than p120RasGAP, but shows no GAP-stimulating activity at all against Rac or Rab3A.
Probab=22.87 E-value=23 Score=39.30 Aligned_cols=27 Identities=26% Similarity=0.576 Sum_probs=19.6
Q ss_pred CcceEEEEEeec-C---C-CCCceeeEEEEeC
Q 003938 81 SASVAGILYKWV-N---Y-GKGWRSRWFVLED 107 (785)
Q Consensus 81 ~~~~~G~L~K~g-~---~-~K~Wk~RWFVL~~ 107 (785)
.+.++|.|.|+. + . .|.||+|||.|.+
T Consensus 279 ~~~~~~~~~~r~~~~~~~~~~~~k~r~~~lt~ 310 (310)
T cd05134 279 ILLKEGFMIKRAQGRKRFGMKNFKKRWFRLTN 310 (310)
T ss_pred chhhhhhHHHhcccCCcccccchhheeeecCC
Confidence 356889999853 1 1 2579999999964
No 111
>cd05128 RasGAP_GAP1_like The GAP1 family of Ras GTPase-activating proteins includes GAP1(m) (or RASA2), GAP1_IP4BP (or RASA3), Ca2+ -promoted Ras inactivator (CAPRI, or RASAL4), and Ras GTPase activating-like proteins (RASAL) or RASAL1. The members are characterized by a conserved domain structure comprising N-terminal tandem C2 domains, a highly conserved central RasGAP domain, and a C-terminal pleckstrin homology domain that is associated with a Bruton's tyrosine kinase motif. While this domain structure is conserved, a small change in the function of each individual domain and the interaction between domains has a marked effect on the regulation of each protein.
Probab=22.20 E-value=22 Score=39.52 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=20.2
Q ss_pred CCcceEEEEEeec-C----CCCCceeeEEEEe
Q 003938 80 VSASVAGILYKWV-N----YGKGWRSRWFVLE 106 (785)
Q Consensus 80 ~~~~~~G~L~K~g-~----~~K~Wk~RWFVL~ 106 (785)
..+.++|++.|+. + ..+.||+|||.|.
T Consensus 284 ~~~~k~g~~~~~~~~~~~~~~~~~k~r~~~lt 315 (315)
T cd05128 284 PVVLKEGFMIKRAQGRGRLGRKNFKKRYFRLT 315 (315)
T ss_pred chhhhhhhhHhhcccCCCccccchhheeeecC
Confidence 3467899998875 2 2357999999984
No 112
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=20.48 E-value=1.4e+02 Score=34.09 Aligned_cols=53 Identities=25% Similarity=0.418 Sum_probs=40.0
Q ss_pred ceeEEccceEEEec----CCCCCceEEEeCC--eEEEEEcCCHHHHHHHHHHHHHHHHH
Q 003938 162 FGEIHLKVSSVRAS----KSDDKRLTIFTGT--KTLHLRCISREDRTVWIDALQAAKDL 214 (785)
Q Consensus 162 ~G~I~L~~~si~~s----~~d~~~F~I~t~~--Rt~~L~A~S~edr~~WI~AL~~a~~~ 214 (785)
...|.|+-|-+... +..++-|.|+++. -|+.|||.+.++...|..||.++...
T Consensus 215 ~k~IpLKm~yvaR~~~~~DpEnR~lEihSpdg~~tliLR~kdsa~A~~Wf~AiHa~v~~ 273 (506)
T KOG3551|consen 215 RKTIPLKMAYVARNLIDADPENRQLEIHSPDGRHTLILRAKDSAEADSWFEAIHANVNT 273 (506)
T ss_pred ccccchhhHHHHhhCCCCCcccceeeeeCCCCcceEEEEccCcHHHHHHHHHHHHHHhh
Confidence 45677776654322 3445668898874 68999999999999999999998643
Done!