Query 003940
Match_columns 784
No_of_seqs 387 out of 1867
Neff 6.1
Searched_HMMs 46136
Date Thu Mar 28 14:41:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003940.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003940hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1331 Highly conserved prote 100.0 2E-163 4E-168 1381.7 65.2 619 99-783 4-622 (667)
2 KOG2244 Highly conserved prote 100.0 3E-162 7E-167 1312.8 55.0 665 76-783 47-734 (786)
3 PF03190 Thioredox_DsbH: Prote 100.0 3.8E-55 8.2E-60 427.7 14.5 163 102-264 1-163 (163)
4 cd02955 SSP411 TRX domain, SSP 100.0 1.1E-31 2.4E-36 254.0 14.0 123 124-246 1-123 (124)
5 cd00249 AGE AGE domain; N-acyl 99.9 2.2E-23 4.8E-28 231.1 29.9 301 353-729 27-340 (384)
6 cd00249 AGE AGE domain; N-acyl 99.9 7.4E-20 1.6E-24 203.0 31.5 316 285-676 16-358 (384)
7 cd02960 AGR Anterior Gradient 99.8 4.8E-20 1E-24 175.2 10.3 91 119-219 4-95 (130)
8 PF13899 Thioredoxin_7: Thiore 99.8 2E-19 4.3E-24 157.8 7.5 82 122-212 1-82 (82)
9 PF07221 GlcNAc_2-epim: N-acyl 99.8 4.1E-19 8.9E-24 195.4 8.1 296 360-676 1-331 (346)
10 cd02958 UAS UAS family; UAS is 99.7 1.2E-17 2.7E-22 155.3 9.5 105 126-242 5-111 (114)
11 cd02959 ERp19 Endoplasmic reti 99.7 2.2E-17 4.7E-22 155.1 9.1 112 119-243 1-114 (117)
12 COG2942 N-acyl-D-glucosamine 2 99.7 4.8E-15 1E-19 161.7 20.0 307 348-675 23-358 (388)
13 cd02951 SoxW SoxW family; SoxW 99.6 1E-15 2.2E-20 144.2 10.2 109 127-242 2-119 (125)
14 smart00594 UAS UAS domain. 99.6 6.1E-15 1.3E-19 139.3 8.9 89 120-214 9-97 (122)
15 cd02953 DsbDgamma DsbD gamma f 99.5 1.5E-14 3.2E-19 131.9 8.9 95 128-226 1-97 (104)
16 COG1331 Highly conserved prote 99.5 7.3E-13 1.6E-17 153.0 22.1 158 375-656 405-571 (667)
17 PF03663 Glyco_hydro_76: Glyco 99.5 2E-12 4.3E-17 144.2 22.9 290 286-724 7-317 (370)
18 PRK00293 dipZ thiol:disulfide 99.5 2E-13 4.2E-18 160.0 11.3 113 119-242 450-570 (571)
19 PF07221 GlcNAc_2-epim: N-acyl 99.5 1.8E-13 3.9E-18 150.7 10.4 163 534-728 11-176 (346)
20 COG4232 Thiol:disulfide interc 99.4 6.6E-13 1.4E-17 151.3 9.3 111 120-241 453-567 (569)
21 PF13098 Thioredoxin_2: Thiore 99.3 3.3E-13 7.1E-18 124.1 1.6 98 134-238 1-112 (112)
22 cd02991 UAS_ETEA UAS family, E 99.2 3.1E-11 6.7E-16 113.4 9.2 102 126-243 5-114 (116)
23 COG2143 Thioredoxin-related pr 99.2 1.1E-10 2.4E-15 112.5 10.7 116 128-250 32-157 (182)
24 PF03663 Glyco_hydro_76: Glyco 99.1 2E-09 4.4E-14 120.3 19.5 166 536-726 86-256 (370)
25 cd02950 TxlA TRX-like protein 99.1 2.1E-10 4.6E-15 111.4 8.1 85 129-224 11-98 (142)
26 KOG2244 Highly conserved prote 99.1 7.6E-10 1.6E-14 123.5 12.9 195 335-656 473-679 (786)
27 cd02954 DIM1 Dim1 family; Dim1 99.0 1.3E-09 2.9E-14 102.0 9.2 79 129-219 3-83 (114)
28 cd02949 TRX_NTR TRX domain, no 98.9 2E-09 4.3E-14 97.1 7.0 78 135-224 10-88 (97)
29 PRK10996 thioredoxin 2; Provis 98.9 3.3E-09 7.2E-14 102.6 8.9 95 128-240 42-137 (139)
30 KOG0910 Thioredoxin-like prote 98.9 4.8E-09 1E-13 101.6 9.2 96 118-226 42-138 (150)
31 cd04791 LanC_SerThrkinase Lant 98.9 4.2E-08 9.2E-13 106.5 17.8 159 540-732 80-238 (321)
32 PLN00410 U5 snRNP protein, DIM 98.9 4.3E-09 9.4E-14 102.1 8.9 75 136-221 21-96 (142)
33 cd02956 ybbN ybbN protein fami 98.9 3.7E-09 7.9E-14 94.6 7.2 72 136-219 10-81 (96)
34 cd02948 TRX_NDPK TRX domain, T 98.8 1E-08 2.2E-13 93.6 8.2 80 128-220 7-87 (102)
35 cd02984 TRX_PICOT TRX domain, 98.8 1.3E-08 2.9E-13 90.9 7.7 70 138-219 14-83 (97)
36 PF07470 Glyco_hydro_88: Glyco 98.8 4.3E-07 9.4E-12 100.0 21.1 152 547-726 127-287 (336)
37 cd03000 PDI_a_TMX3 PDIa family 98.8 1.2E-08 2.7E-13 93.0 7.1 74 126-211 4-80 (104)
38 cd02985 TRX_CDSP32 TRX family, 98.8 2.4E-08 5.3E-13 91.3 8.2 73 137-219 14-86 (103)
39 TIGR01126 pdi_dom protein disu 98.8 3E-08 6.5E-13 88.7 8.6 78 128-216 3-82 (102)
40 cd02986 DLP Dim1 family, Dim1- 98.8 1.1E-08 2.4E-13 95.4 5.9 76 128-217 6-81 (114)
41 PHA02278 thioredoxin-like prot 98.7 2.7E-08 5.8E-13 91.6 7.2 79 129-219 5-87 (103)
42 cd02963 TRX_DnaJ TRX domain, D 98.7 2.2E-08 4.8E-13 92.9 6.1 73 135-219 21-94 (111)
43 cd03003 PDI_a_ERdj5_N PDIa fam 98.7 3.7E-08 8.1E-13 89.2 7.4 79 128-218 8-86 (101)
44 cd02993 PDI_a_APS_reductase PD 98.7 4.6E-08 1E-12 90.3 8.2 79 129-217 12-92 (109)
45 cd02997 PDI_a_PDIR PDIa family 98.7 5.6E-08 1.2E-12 87.6 8.1 79 128-218 7-89 (104)
46 cd02996 PDI_a_ERp44 PDIa famil 98.6 8.7E-08 1.9E-12 87.9 7.4 77 128-216 8-90 (108)
47 TIGR01068 thioredoxin thioredo 98.6 1.8E-07 3.9E-12 83.3 9.1 79 129-219 4-83 (101)
48 cd02961 PDI_a_family Protein D 98.6 1.1E-07 2.4E-12 83.8 7.7 80 128-218 5-86 (101)
49 cd03004 PDI_a_ERdj5_C PDIa fam 98.6 1.1E-07 2.4E-12 86.4 7.5 80 129-219 9-89 (104)
50 cd02962 TMX2 TMX2 family; comp 98.6 1E-07 2.2E-12 93.9 7.8 114 128-248 35-151 (152)
51 cd03006 PDI_a_EFP1_N PDIa fami 98.6 1.1E-07 2.3E-12 89.2 6.7 77 128-216 16-96 (113)
52 PTZ00051 thioredoxin; Provisio 98.5 1.9E-07 4.1E-12 83.7 7.3 79 128-219 8-86 (98)
53 cd03002 PDI_a_MPD1_like PDI fa 98.5 2.3E-07 5E-12 84.7 7.7 69 135-214 15-85 (109)
54 KOG0907 Thioredoxin [Posttrans 98.5 1.6E-07 3.4E-12 87.0 6.2 77 128-217 11-87 (106)
55 cd02947 TRX_family TRX family; 98.5 1.9E-07 4.1E-12 80.6 6.0 76 131-219 3-78 (93)
56 cd02999 PDI_a_ERp44_like PDIa 98.5 2E-07 4.3E-12 85.1 6.4 67 135-213 15-82 (100)
57 PRK09381 trxA thioredoxin; Pro 98.5 3.8E-07 8.2E-12 83.7 8.2 73 135-219 18-90 (109)
58 PF00085 Thioredoxin: Thioredo 98.5 2.7E-07 5.9E-12 82.5 7.0 76 131-218 9-85 (103)
59 cd02998 PDI_a_ERp38 PDIa famil 98.5 3.9E-07 8.5E-12 81.9 6.9 72 134-216 14-88 (105)
60 cd02995 PDI_a_PDI_a'_C PDIa fa 98.4 4.9E-07 1.1E-11 81.3 7.6 73 130-214 9-84 (104)
61 cd03005 PDI_a_ERp46 PDIa famil 98.4 5.2E-07 1.1E-11 81.1 7.6 78 128-218 7-87 (102)
62 COG2942 N-acyl-D-glucosamine 2 98.4 1.9E-05 4.2E-10 87.3 20.9 157 542-722 114-271 (388)
63 COG3118 Thioredoxin domain-con 98.4 5.4E-07 1.2E-11 96.1 8.4 91 136-244 41-132 (304)
64 PTZ00443 Thioredoxin domain-co 98.4 1.5E-06 3.3E-11 90.7 11.1 70 137-218 51-120 (224)
65 cd02975 PfPDO_like_N Pyrococcu 98.4 1E-06 2.2E-11 82.3 8.6 97 128-243 12-111 (113)
66 TIGR00385 dsbE periplasmic pro 98.4 1.1E-06 2.5E-11 87.8 9.6 83 136-224 61-159 (173)
67 cd02989 Phd_like_TxnDC9 Phosdu 98.4 6.9E-07 1.5E-11 83.5 7.4 79 128-219 12-90 (113)
68 cd03065 PDI_b_Calsequestrin_N 98.4 8.2E-07 1.8E-11 84.1 7.8 95 129-241 17-118 (120)
69 cd04791 LanC_SerThrkinase Lant 98.4 3.4E-05 7.4E-10 83.8 20.8 135 547-726 142-276 (321)
70 TIGR01295 PedC_BrcD bacterioci 98.4 1E-06 2.2E-11 83.7 7.6 88 128-219 13-105 (122)
71 cd03001 PDI_a_P5 PDIa family, 98.3 1.4E-06 2.9E-11 78.5 7.5 75 128-213 7-82 (103)
72 PRK15412 thiol:disulfide inter 98.3 1.8E-06 3.8E-11 87.4 9.0 78 137-220 67-159 (185)
73 cd02994 PDI_a_TMX PDIa family, 98.3 1.5E-06 3.3E-11 78.5 7.6 74 129-216 9-83 (101)
74 cd03009 TryX_like_TryX_NRX Try 98.3 8.1E-07 1.8E-11 84.2 5.8 81 135-219 15-115 (131)
75 cd02952 TRP14_like Human TRX-r 98.3 1.6E-06 3.5E-11 82.0 7.7 71 137-214 20-101 (119)
76 cd03008 TryX_like_RdCVF Trypar 98.2 3.5E-06 7.6E-11 82.5 8.5 83 134-219 21-128 (146)
77 cd03010 TlpA_like_DsbE TlpA-li 98.2 2.8E-06 6.1E-11 79.9 7.1 89 131-225 18-123 (127)
78 cd02992 PDI_a_QSOX PDIa family 98.2 4E-06 8.7E-11 78.4 7.7 77 128-215 8-90 (114)
79 cd02965 HyaE HyaE family; HyaE 98.1 4.1E-06 8.8E-11 78.2 6.5 86 122-219 11-98 (111)
80 cd02957 Phd_like Phosducin (Ph 98.1 5E-06 1.1E-10 77.3 7.0 68 138-219 24-91 (113)
81 PF13905 Thioredoxin_8: Thiore 98.1 7.7E-06 1.7E-10 72.9 7.9 76 138-216 1-95 (95)
82 PRK14018 trifunctional thiored 98.1 3.2E-06 6.9E-11 98.0 6.7 96 137-242 55-173 (521)
83 cd03011 TlpA_like_ScsD_MtbDsbE 98.1 2.8E-06 6E-11 79.2 5.0 88 130-225 12-115 (123)
84 PF07944 DUF1680: Putative gly 98.1 0.00033 7.1E-09 82.1 23.4 272 294-720 39-331 (520)
85 cd02967 mauD Methylamine utili 98.1 9E-06 2E-10 74.7 8.1 80 137-220 20-112 (114)
86 cd02964 TryX_like_family Trypa 98.1 7.2E-06 1.6E-10 78.1 7.7 86 131-219 10-115 (132)
87 PTZ00102 disulphide isomerase; 98.1 3.6E-06 7.8E-11 96.6 6.6 77 129-216 365-444 (477)
88 cd02966 TlpA_like_family TlpA- 98.1 4.5E-06 9.7E-11 74.8 5.5 87 130-219 11-113 (116)
89 PTZ00102 disulphide isomerase; 98.1 6.1E-06 1.3E-10 94.7 7.6 77 128-215 39-118 (477)
90 TIGR01130 ER_PDI_fam protein d 98.1 7.8E-06 1.7E-10 92.8 7.9 77 128-216 8-87 (462)
91 COG4225 Predicted unsaturated 98.0 0.0006 1.3E-08 74.3 21.1 273 292-731 19-308 (357)
92 PHA02125 thioredoxin-like prot 98.0 1.2E-05 2.6E-10 69.5 6.6 64 142-226 2-65 (75)
93 TIGR00411 redox_disulf_1 small 98.0 1.2E-05 2.5E-10 69.5 6.1 61 142-216 3-63 (82)
94 cd02987 Phd_like_Phd Phosducin 98.0 2.2E-05 4.7E-10 79.2 8.0 68 138-219 83-150 (175)
95 TIGR02738 TrbB type-F conjugat 97.9 2.6E-05 5.6E-10 77.0 7.6 81 135-218 47-133 (153)
96 TIGR00424 APS_reduc 5'-adenyly 97.9 2.5E-05 5.3E-10 89.6 8.5 69 135-214 368-439 (463)
97 PLN02309 5'-adenylylsulfate re 97.9 1.8E-05 4E-10 90.6 7.1 72 133-214 360-433 (457)
98 PRK03147 thiol-disulfide oxido 97.9 4.6E-05 1E-09 75.3 8.7 84 133-219 56-154 (173)
99 PF07470 Glyco_hydro_88: Glyco 97.8 0.0011 2.4E-08 73.1 19.8 146 554-729 77-226 (336)
100 cd02982 PDI_b'_family Protein 97.8 3.4E-05 7.4E-10 69.5 6.2 65 138-213 12-78 (103)
101 TIGR02740 TraF-like TraF-like 97.8 7.3E-05 1.6E-09 80.5 8.6 78 135-217 163-243 (271)
102 KOG0908 Thioredoxin-like prote 97.8 2E-05 4.4E-10 81.9 3.9 72 133-217 16-87 (288)
103 TIGR01626 ytfJ_HI0045 conserve 97.7 0.0001 2.2E-09 74.8 8.7 97 118-225 44-169 (184)
104 TIGR00412 redox_disulf_2 small 97.7 4.2E-05 9.2E-10 66.4 4.8 65 143-225 3-67 (76)
105 TIGR02187 GlrX_arch Glutaredox 97.7 9.9E-05 2.1E-09 76.5 8.2 77 128-217 122-199 (215)
106 cd03012 TlpA_like_DipZ_like Tl 97.7 8.4E-05 1.8E-09 70.1 6.8 87 130-219 15-121 (126)
107 cd02973 TRX_GRX_like Thioredox 97.7 9E-05 2E-09 61.9 5.8 63 142-219 3-65 (67)
108 TIGR02661 MauD methylamine deh 97.6 0.00016 3.5E-09 73.5 8.5 78 136-219 72-162 (189)
109 PF06662 C5-epim_C: D-glucuron 97.6 0.0017 3.6E-08 66.3 15.5 139 546-718 32-186 (189)
110 cd04434 LanC_like LanC-like pr 97.6 0.0098 2.1E-07 64.5 22.5 158 542-728 98-256 (343)
111 cd04792 LanM-like LanM-like pr 97.6 0.0051 1.1E-07 76.0 22.5 253 365-724 475-735 (825)
112 PLN02919 haloacid dehalogenase 97.6 0.00011 2.5E-09 92.4 7.7 101 137-247 419-541 (1057)
113 cd03026 AhpF_NTD_C TRX-GRX-lik 97.6 0.00016 3.4E-09 64.9 6.5 74 132-220 5-79 (89)
114 TIGR02187 GlrX_arch Glutaredox 97.5 0.00017 3.8E-09 74.7 6.5 70 136-217 18-90 (215)
115 cd04793 LanC LanC is the cycla 97.5 0.02 4.3E-07 64.4 22.7 142 550-729 178-331 (382)
116 TIGR01130 ER_PDI_fam protein d 97.4 0.00025 5.5E-09 80.6 7.4 68 135-215 361-431 (462)
117 PF08534 Redoxin: Redoxin; In 97.4 0.00042 9E-09 66.7 7.6 84 133-220 23-131 (146)
118 PF07944 DUF1680: Putative gly 97.4 0.0018 3.9E-08 76.0 14.1 136 546-723 62-207 (520)
119 COG4225 Predicted unsaturated 97.4 0.0038 8.2E-08 68.2 15.2 146 579-733 98-247 (357)
120 PF06662 C5-epim_C: D-glucuron 97.3 0.0063 1.4E-07 62.2 14.4 45 379-425 29-73 (189)
121 PTZ00062 glutaredoxin; Provisi 97.2 0.00094 2E-08 69.0 7.3 71 128-219 6-77 (204)
122 PLN02399 phospholipid hydroper 97.2 0.00088 1.9E-08 70.7 7.2 21 135-155 96-116 (236)
123 cd03007 PDI_a_ERp29_N PDIa fam 97.1 0.00079 1.7E-08 63.5 5.8 71 128-213 8-90 (116)
124 cd02969 PRX_like1 Peroxiredoxi 97.1 0.0043 9.3E-08 61.6 11.3 81 137-220 24-126 (171)
125 COG3533 Uncharacterized protei 97.1 0.044 9.6E-07 62.6 20.0 174 334-655 84-263 (589)
126 KOG2501 Thioredoxin, nucleored 97.1 0.0016 3.5E-08 64.2 7.7 88 128-219 23-131 (157)
127 cd01659 TRX_superfamily Thiore 97.0 0.00089 1.9E-08 52.2 4.4 63 142-213 1-63 (69)
128 cd02988 Phd_like_VIAF Phosduci 97.0 0.0011 2.4E-08 67.9 6.1 66 138-219 102-167 (192)
129 cd02990 UAS_FAF1 UAS family, F 97.0 0.0043 9.3E-08 60.2 9.7 89 126-215 5-108 (136)
130 PRK13728 conjugal transfer pro 97.0 0.0015 3.1E-08 66.4 6.4 70 142-218 73-151 (181)
131 PF06917 Pectate_lyase_2: Peri 96.9 0.43 9.3E-06 54.8 25.7 130 579-727 327-473 (557)
132 PLN03009 cellulase 96.8 0.024 5.2E-07 66.1 15.6 65 357-426 72-139 (495)
133 PF00759 Glyco_hydro_9: Glycos 96.8 0.0058 1.2E-07 70.0 10.2 90 545-652 155-247 (444)
134 cd03017 PRX_BCP Peroxiredoxin 96.8 0.0048 1E-07 58.6 8.0 84 137-224 22-131 (140)
135 PTZ00056 glutathione peroxidas 96.8 0.0038 8.3E-08 64.2 7.8 19 137-155 38-56 (199)
136 PRK09437 bcp thioredoxin-depen 96.8 0.0065 1.4E-07 59.2 8.9 85 137-225 29-142 (154)
137 KOG0190 Protein disulfide isom 96.7 0.0022 4.7E-08 73.9 5.9 77 128-216 32-111 (493)
138 PLN02266 endoglucanase 96.7 0.073 1.6E-06 62.2 18.4 82 546-649 192-281 (510)
139 cd04794 euk_LANCL eukaryotic L 96.7 0.13 2.8E-06 57.0 19.6 137 549-728 170-307 (343)
140 KOG0190 Protein disulfide isom 96.7 0.0027 5.8E-08 73.1 6.2 95 104-214 345-449 (493)
141 KOG4277 Uncharacterized conser 96.7 0.0015 3.3E-08 69.6 3.9 81 126-218 32-115 (468)
142 KOG0191 Thioredoxin/protein di 96.6 0.0031 6.7E-08 71.1 6.4 74 132-216 41-114 (383)
143 cd04434 LanC_like LanC-like pr 96.6 0.85 1.8E-05 49.4 25.2 134 549-724 164-299 (343)
144 cd04792 LanM-like LanM-like pr 96.6 0.94 2E-05 56.2 28.3 139 546-729 645-785 (825)
145 COG3533 Uncharacterized protei 96.6 0.18 3.9E-06 57.8 19.7 124 547-724 134-261 (589)
146 PTZ00470 glycoside hydrolase f 96.5 0.25 5.4E-06 58.1 21.3 291 371-737 150-466 (522)
147 cd02889 SQCY Squalene cyclase 96.5 0.36 7.8E-06 53.1 21.7 45 380-425 92-138 (348)
148 TIGR02180 GRX_euk Glutaredoxin 96.5 0.0078 1.7E-07 52.0 6.9 66 143-219 2-67 (84)
149 COG4403 LcnDR2 Lantibiotic mod 96.5 0.22 4.8E-06 60.5 20.7 289 335-730 596-921 (963)
150 PLN02340 endoglucanase 96.5 0.046 1E-06 65.1 14.9 186 357-650 74-266 (614)
151 PLN02412 probable glutathione 96.4 0.0074 1.6E-07 60.2 7.1 19 137-155 28-46 (167)
152 PLN02420 endoglucanase 96.4 0.12 2.6E-06 60.6 17.9 89 547-650 190-278 (525)
153 PLN02171 endoglucanase 96.4 0.11 2.4E-06 62.2 17.8 84 547-650 179-267 (629)
154 PLN02345 endoglucanase 96.3 0.14 3.1E-06 59.3 17.7 82 547-646 145-228 (469)
155 PLN02613 endoglucanase 96.2 0.21 4.6E-06 58.3 18.4 81 546-648 174-257 (498)
156 TIGR02196 GlrX_YruB Glutaredox 96.2 0.018 3.9E-07 47.8 7.1 62 142-219 2-63 (74)
157 PF00578 AhpC-TSA: AhpC/TSA fa 96.2 0.014 3.1E-07 54.0 7.1 78 137-218 24-123 (124)
158 TIGR02540 gpx7 putative glutat 96.2 0.018 4E-07 56.2 8.2 24 132-155 16-39 (153)
159 PF01532 Glyco_hydro_47: Glyco 96.2 0.039 8.5E-07 63.8 12.0 164 543-732 76-252 (452)
160 cd02968 SCO SCO (an acronym fo 96.2 0.013 2.8E-07 55.8 6.7 33 137-172 21-54 (142)
161 PLN00119 endoglucanase 96.1 0.2 4.4E-06 58.3 17.5 85 547-648 180-265 (489)
162 PF14595 Thioredoxin_9: Thiore 96.1 0.0055 1.2E-07 58.9 4.0 82 127-219 29-113 (129)
163 PLN02909 Endoglucanase 96.1 0.29 6.3E-06 57.0 18.6 79 547-647 183-264 (486)
164 PLN02308 endoglucanase 96.1 0.32 6.9E-06 56.8 18.9 84 547-648 175-262 (492)
165 KOG2787 Lanthionine synthetase 96.0 0.027 5.9E-07 61.1 9.0 77 549-655 285-361 (403)
166 cd00340 GSH_Peroxidase Glutath 96.0 0.01 2.3E-07 57.9 5.4 23 133-156 17-39 (152)
167 PF01532 Glyco_hydro_47: Glyco 96.0 0.26 5.7E-06 57.1 17.5 298 335-706 98-432 (452)
168 PRK10382 alkyl hydroperoxide r 95.8 0.046 1E-06 55.8 9.4 98 137-242 30-153 (187)
169 PF05147 LANC_like: Lanthionin 95.8 0.0046 9.9E-08 67.8 2.2 249 379-725 7-262 (355)
170 PTZ00470 glycoside hydrolase f 95.8 0.051 1.1E-06 63.7 10.8 99 622-725 157-256 (522)
171 cd03015 PRX_Typ2cys Peroxiredo 95.8 0.037 8.1E-07 55.2 8.4 82 134-220 25-136 (173)
172 cd03419 GRX_GRXh_1_2_like Glut 95.7 0.046 9.9E-07 47.1 7.7 64 143-219 3-66 (82)
173 TIGR03137 AhpC peroxiredoxin. 95.7 0.062 1.3E-06 54.6 9.8 96 137-242 30-153 (187)
174 PTZ00256 glutathione peroxidas 95.6 0.022 4.7E-07 57.7 6.1 21 135-155 37-58 (183)
175 PRK11509 hydrogenase-1 operon 95.6 0.021 4.5E-07 55.2 5.4 52 164-224 59-112 (132)
176 KOG2507 Ubiquitin regulatory p 95.5 0.094 2E-06 58.7 11.0 111 122-247 2-113 (506)
177 PRK00522 tpx lipid hydroperoxi 95.5 0.043 9.2E-07 54.7 7.7 98 137-242 43-166 (167)
178 COG0526 TrxA Thiol-disulfide i 95.4 0.038 8.1E-07 48.4 6.1 64 138-210 32-96 (127)
179 cd03014 PRX_Atyp2cys Peroxired 95.4 0.033 7.1E-07 53.4 6.1 93 137-238 25-141 (143)
180 cd02976 NrdH NrdH-redoxin (Nrd 95.3 0.052 1.1E-06 44.9 6.5 62 142-219 2-63 (73)
181 cd02892 SQCY_1 Squalene cyclas 95.2 3.3 7.1E-05 50.1 23.8 60 358-425 359-421 (634)
182 cd04794 euk_LANCL eukaryotic L 95.1 0.36 7.9E-06 53.5 14.4 78 550-657 230-307 (343)
183 PLN02175 endoglucanase 95.1 0.51 1.1E-05 54.9 15.9 86 547-647 172-258 (484)
184 TIGR02200 GlrX_actino Glutared 95.1 0.056 1.2E-06 45.7 6.2 63 142-219 2-65 (77)
185 KOG0191 Thioredoxin/protein di 95.0 0.02 4.4E-07 64.5 4.0 71 134-215 158-230 (383)
186 cd02971 PRX_family Peroxiredox 94.9 0.056 1.2E-06 51.2 6.2 79 137-219 21-125 (140)
187 TIGR01577 oligosac_amyl oligos 94.9 2.5 5.5E-05 50.9 21.5 154 545-725 415-574 (616)
188 PRK11657 dsbG disulfide isomer 94.9 0.09 1.9E-06 56.2 8.2 28 199-226 215-242 (251)
189 cd04793 LanC LanC is the cycla 94.7 1.3 2.9E-05 49.7 17.5 84 547-657 247-330 (382)
190 COG4833 Predicted glycosyl hyd 94.4 0.43 9.4E-06 50.9 11.6 155 528-706 111-283 (377)
191 cd03018 PRX_AhpE_like Peroxire 94.4 0.096 2.1E-06 50.3 6.5 82 134-219 23-129 (149)
192 PRK15000 peroxidase; Provision 94.2 0.13 2.7E-06 53.1 7.2 97 137-242 33-159 (200)
193 KOG1752 Glutaredoxin and relat 94.2 0.13 2.8E-06 47.7 6.6 67 131-209 7-73 (104)
194 PF02966 DIM1: Mitosis protein 94.1 0.24 5.2E-06 47.7 8.3 99 130-242 10-117 (133)
195 cd02970 PRX_like2 Peroxiredoxi 93.8 0.25 5.4E-06 47.1 8.0 44 137-183 22-67 (149)
196 PF06110 DUF953: Eukaryotic pr 93.8 0.061 1.3E-06 51.1 3.6 80 128-215 9-101 (119)
197 PRK10877 protein disulfide iso 93.8 0.22 4.8E-06 52.5 8.2 25 135-159 104-128 (232)
198 PRK13190 putative peroxiredoxi 93.7 0.16 3.6E-06 52.3 7.0 36 203-242 116-151 (202)
199 cd02892 SQCY_1 Squalene cyclas 93.5 13 0.00029 44.9 23.8 115 281-422 234-349 (634)
200 TIGR03143 AhpF_homolog putativ 93.4 0.17 3.6E-06 60.1 7.2 79 127-220 464-543 (555)
201 TIGR02189 GlrX-like_plant Glut 93.2 0.34 7.3E-06 44.3 7.4 64 142-218 10-73 (99)
202 PRK15317 alkyl hydroperoxide r 93.1 0.3 6.5E-06 57.4 8.8 94 108-219 85-182 (517)
203 cd02066 GRX_family Glutaredoxi 93.0 0.39 8.4E-06 39.3 6.9 61 143-219 3-63 (72)
204 PF06917 Pectate_lyase_2: Peri 92.9 0.39 8.5E-06 55.2 8.8 140 502-667 317-481 (557)
205 PF00462 Glutaredoxin: Glutare 92.8 0.34 7.4E-06 39.5 6.2 53 143-209 2-55 (60)
206 PF06202 GDE_C: Amylo-alpha-1, 92.8 9.1 0.0002 43.3 19.7 115 314-431 89-225 (370)
207 KOG3414 Component of the U4/U6 92.6 0.31 6.8E-06 46.4 6.3 81 112-212 3-86 (142)
208 PTZ00253 tryparedoxin peroxida 92.6 0.23 4.9E-06 51.0 6.0 80 137-220 35-143 (199)
209 PRK11200 grxA glutaredoxin 1; 92.5 1 2.2E-05 39.6 9.2 66 142-218 3-70 (85)
210 TIGR01507 hopene_cyclase squal 92.4 21 0.00046 43.4 23.1 45 379-425 380-424 (635)
211 PTZ00137 2-Cys peroxiredoxin; 92.2 0.85 1.8E-05 49.1 10.0 96 137-242 97-222 (261)
212 TIGR00365 monothiol glutaredox 91.7 0.76 1.7E-05 41.8 7.7 72 130-218 4-79 (97)
213 cd02896 complement_C3_C4_C5 Pr 91.7 23 0.0005 38.6 22.9 76 335-424 48-123 (297)
214 PRK13599 putative peroxiredoxi 91.4 0.57 1.2E-05 48.9 7.4 37 203-243 118-154 (215)
215 cd03027 GRX_DEP Glutaredoxin ( 91.2 0.63 1.4E-05 39.5 6.3 56 142-211 3-58 (73)
216 PHA03050 glutaredoxin; Provisi 91.2 0.87 1.9E-05 42.4 7.7 70 136-218 11-81 (108)
217 TIGR03140 AhpF alkyl hydropero 91.1 0.75 1.6E-05 54.0 8.8 78 127-219 105-183 (515)
218 TIGR02190 GlrX-dom Glutaredoxi 91.0 0.5 1.1E-05 41.0 5.5 67 134-219 4-70 (79)
219 cd03028 GRX_PICOT_like Glutare 90.9 1 2.3E-05 40.2 7.7 64 138-217 7-74 (90)
220 KOG0912 Thiol-disulfide isomer 90.9 0.63 1.4E-05 50.6 7.1 63 137-210 12-79 (375)
221 COG4403 LcnDR2 Lantibiotic mod 90.5 6.9 0.00015 48.3 16.0 147 540-739 690-838 (963)
222 cd02889 SQCY Squalene cyclase 90.5 7.3 0.00016 42.8 15.6 142 580-727 43-204 (348)
223 PF13728 TraF: F plasmid trans 90.3 1 2.2E-05 47.1 8.0 73 138-217 120-197 (215)
224 TIGR01577 oligosac_amyl oligos 90.2 6 0.00013 47.7 15.5 147 546-727 300-457 (616)
225 PRK10606 btuE putative glutath 89.7 0.85 1.8E-05 46.5 6.7 77 132-215 19-102 (183)
226 PRK10638 glutaredoxin 3; Provi 89.6 1.2 2.7E-05 38.8 6.9 62 142-219 4-65 (83)
227 PF13192 Thioredoxin_3: Thiore 89.3 0.8 1.7E-05 39.5 5.3 57 146-220 6-63 (76)
228 TIGR02194 GlrX_NrdH Glutaredox 89.1 0.74 1.6E-05 39.1 4.9 53 143-209 2-54 (72)
229 TIGR02183 GRXA Glutaredoxin, G 89.0 1.5 3.3E-05 38.8 7.1 66 142-218 2-69 (86)
230 PRK13191 putative peroxiredoxi 89.0 2.5 5.5E-05 44.1 9.9 37 203-243 123-159 (215)
231 TIGR01507 hopene_cyclase squal 88.9 25 0.00054 42.8 19.4 117 297-425 362-492 (635)
232 cd03016 PRX_1cys Peroxiredoxin 88.9 1.4 3.1E-05 45.3 7.9 19 139-157 26-45 (203)
233 cd03418 GRX_GRXb_1_3_like Glut 88.8 1.2 2.6E-05 37.5 6.1 61 142-218 2-63 (75)
234 PLN02993 lupeol synthase 88.7 14 0.00031 45.6 17.2 60 359-425 471-534 (763)
235 KOG0911 Glutaredoxin-related p 88.4 0.18 4E-06 52.5 0.9 62 137-210 16-77 (227)
236 KOG2204 Mannosyl-oligosacchari 88.4 4.7 0.0001 47.2 12.0 92 622-725 264-364 (625)
237 TIGR02181 GRX_bact Glutaredoxi 87.6 1.3 2.9E-05 37.9 5.7 59 143-217 2-60 (79)
238 TIGR02474 pec_lyase pectate ly 87.6 0.68 1.5E-05 50.5 4.6 41 384-425 48-88 (290)
239 PF05147 LANC_like: Lanthionin 87.2 2.4 5.2E-05 46.4 8.8 135 547-724 170-307 (355)
240 PLN02993 lupeol synthase 87.2 5 0.00011 49.4 12.1 82 337-425 514-611 (763)
241 PLN03012 Camelliol C synthase 87.1 25 0.00054 43.5 17.9 60 359-425 471-534 (759)
242 PRK10329 glutaredoxin-like pro 86.9 1.5 3.3E-05 38.6 5.6 54 142-209 3-56 (81)
243 PRK11097 endo-1,4-D-glucanase; 86.8 7.7 0.00017 44.0 12.5 131 586-725 74-213 (376)
244 PF05592 Bac_rhamnosid: Bacter 86.5 14 0.0003 43.3 15.0 116 537-664 197-326 (509)
245 cd03020 DsbA_DsbC_DsbG DsbA fa 86.1 0.63 1.4E-05 47.5 3.2 32 130-161 69-100 (197)
246 KOG2430 Glycosyl hydrolase, fa 86.0 3 6.5E-05 45.9 8.3 67 579-655 324-394 (587)
247 PRK13703 conjugal pilus assemb 85.1 2.9 6.3E-05 44.8 7.7 79 130-217 137-220 (248)
248 PRK13189 peroxiredoxin; Provis 85.1 2.9 6.2E-05 43.9 7.7 36 203-242 125-160 (222)
249 TIGR03463 osq_cycl 2,3-oxidosq 84.8 1E+02 0.0023 37.5 27.4 108 280-415 232-340 (634)
250 KOG2204 Mannosyl-oligosacchari 84.8 40 0.00086 39.9 16.9 283 381-736 263-571 (625)
251 TIGR01561 gde_arch glycogen de 84.4 24 0.00051 42.4 15.7 112 544-668 348-480 (575)
252 TIGR01787 squalene_cyclas squa 84.2 1E+02 0.0022 37.6 21.1 66 357-425 403-481 (621)
253 PRK10137 alpha-glucosidase; Pr 84.1 1.2E+02 0.0027 37.8 22.1 47 622-668 581-634 (786)
254 KOG2431 1, 2-alpha-mannosidase 83.7 60 0.0013 37.3 17.2 305 368-707 167-522 (546)
255 TIGR02739 TraF type-F conjugat 83.7 3.6 7.8E-05 44.3 7.7 72 139-217 151-227 (256)
256 KOG2429 Glycosyl hydrolase, fa 83.7 19 0.00042 42.3 13.8 35 624-658 375-409 (622)
257 TIGR02474 pec_lyase pectate ly 82.9 76 0.0017 34.9 17.5 92 524-637 28-122 (290)
258 KOG1731 FAD-dependent sulfhydr 82.2 0.84 1.8E-05 53.4 2.4 71 139-218 58-131 (606)
259 COG0695 GrxC Glutaredoxin and 82.1 2.9 6.2E-05 36.8 5.2 57 142-209 3-59 (80)
260 cd03029 GRX_hybridPRX5 Glutare 81.6 4.4 9.5E-05 34.2 6.1 59 142-217 3-61 (72)
261 cd00688 ISOPREN_C2_like This g 81.5 70 0.0015 33.1 20.5 76 337-425 50-125 (300)
262 PRK12759 bifunctional gluaredo 81.3 2.3 4.9E-05 48.8 5.5 64 142-218 4-72 (410)
263 KOG2431 1, 2-alpha-mannosidase 81.3 4 8.7E-05 46.2 7.1 100 622-726 177-276 (546)
264 KOG3425 Uncharacterized conser 81.0 3.9 8.3E-05 39.0 5.8 44 137-186 24-78 (128)
265 PF09492 Pec_lyase: Pectic aci 80.8 1.8 3.8E-05 47.3 4.1 40 384-424 43-82 (289)
266 COG4833 Predicted glycosyl hyd 79.1 3.7 8.1E-05 44.1 5.7 97 545-673 47-153 (377)
267 TIGR01535 glucan_glucosid gluc 77.7 42 0.00091 40.9 14.8 138 547-725 301-444 (648)
268 TIGR03463 osq_cycl 2,3-oxidosq 77.7 37 0.00079 41.4 14.4 157 547-726 310-489 (634)
269 PF07678 A2M_comp: A-macroglob 77.6 34 0.00074 36.3 12.7 61 354-424 9-69 (246)
270 PLN02308 endoglucanase 76.5 1.7E+02 0.0037 34.7 22.4 112 299-414 72-212 (492)
271 PF06202 GDE_C: Amylo-alpha-1, 73.8 79 0.0017 35.8 15.0 139 583-727 50-209 (370)
272 PRK10824 glutaredoxin-4; Provi 73.2 12 0.00027 35.4 7.0 50 129-188 6-59 (115)
273 PLN02613 endoglucanase 72.5 2.1E+02 0.0046 33.9 20.2 145 299-460 70-248 (498)
274 PLN03012 Camelliol C synthase 71.2 28 0.0006 43.1 11.1 65 583-649 639-710 (759)
275 cd02972 DsbA_family DsbA famil 70.2 12 0.00027 31.9 6.0 17 143-159 2-18 (98)
276 cd02894 GGTase-II Geranylgeran 69.7 1.7E+02 0.0037 31.7 19.5 68 585-667 198-267 (287)
277 TIGR01787 squalene_cyclas squa 69.3 30 0.00065 42.0 10.8 55 357-424 475-529 (621)
278 PF05592 Bac_rhamnosid: Bacter 67.5 93 0.002 36.4 14.3 192 503-728 108-319 (509)
279 PF03200 Glyco_hydro_63: Manno 67.4 65 0.0014 40.4 13.4 54 542-607 560-613 (801)
280 PF09492 Pec_lyase: Pectic aci 67.0 20 0.00043 39.3 7.9 101 534-656 33-145 (289)
281 cd03023 DsbA_Com1_like DsbA fa 66.5 5.5 0.00012 37.8 3.2 23 136-158 3-25 (154)
282 cd00688 ISOPREN_C2_like This g 66.3 86 0.0019 32.4 12.5 128 281-423 50-179 (300)
283 COG1999 Uncharacterized protei 65.9 10 0.00022 39.5 5.2 53 136-191 65-125 (207)
284 PLN02345 endoglucanase 65.3 1.5E+02 0.0034 34.8 15.2 118 579-717 82-228 (469)
285 PF02630 SCO1-SenC: SCO1/SenC; 64.5 3.5 7.5E-05 41.5 1.5 57 134-193 48-111 (174)
286 PLN02266 endoglucanase 63.4 2.2E+02 0.0047 33.9 16.0 123 579-721 130-282 (510)
287 cd02890 PTase Protein prenyltr 62.6 93 0.002 33.4 12.2 120 282-425 46-167 (286)
288 KOG2787 Lanthionine synthetase 62.5 72 0.0016 35.5 10.9 116 579-722 241-357 (403)
289 PF01270 Glyco_hydro_8: Glycos 62.2 25 0.00054 39.4 7.8 94 547-656 116-211 (342)
290 PF00759 Glyco_hydro_9: Glycos 62.2 1.6E+02 0.0036 33.7 14.8 126 578-723 93-247 (444)
291 KOG2430 Glycosyl hydrolase, fa 60.0 46 0.001 37.0 9.0 95 542-655 183-283 (587)
292 PF13249 Prenyltrans_2: Prenyl 58.6 34 0.00073 30.8 6.8 28 396-424 85-112 (113)
293 COG3408 GDB1 Glycogen debranch 58.0 86 0.0019 38.3 11.8 100 579-680 362-483 (641)
294 PF13848 Thioredoxin_6: Thiore 56.5 40 0.00086 33.0 7.4 78 128-216 84-164 (184)
295 PF01204 Trehalase: Trehalase; 56.3 2.3E+02 0.005 33.6 14.9 94 541-656 305-402 (512)
296 PLN00119 endoglucanase 56.1 3.8E+02 0.0082 31.8 16.3 119 579-718 117-264 (489)
297 PRK11097 endo-1,4-D-glucanase; 56.0 90 0.0019 35.6 10.8 104 537-656 109-215 (376)
298 PLN02171 endoglucanase 55.4 4.5E+02 0.0098 32.2 17.1 121 579-722 116-268 (629)
299 PRK13271 treA trehalase; Provi 54.8 3.4E+02 0.0073 32.9 15.8 102 541-666 337-442 (569)
300 cd02897 A2M_2 Proteins similar 54.5 44 0.00095 36.1 8.0 77 336-424 46-122 (292)
301 PF05768 DUF836: Glutaredoxin- 54.5 23 0.00049 30.9 4.7 55 142-211 2-57 (81)
302 cd03060 GST_N_Omega_like GST_N 52.2 51 0.0011 27.4 6.4 60 144-219 3-62 (71)
303 cd03051 GST_N_GTT2_like GST_N 51.7 43 0.00092 27.5 5.8 63 144-219 3-65 (74)
304 PF13417 GST_N_3: Glutathione 51.7 64 0.0014 27.2 7.0 58 145-219 2-59 (75)
305 cd03040 GST_N_mPGES2 GST_N fam 50.5 29 0.00064 29.2 4.7 62 143-220 3-65 (77)
306 KOG3760 Heparan sulfate-glucur 50.3 1.3E+02 0.0027 34.5 10.4 144 545-722 418-585 (594)
307 PRK13270 treF trehalase; Provi 50.3 4.6E+02 0.01 31.6 15.9 126 544-701 350-481 (549)
308 cd03019 DsbA_DsbA DsbA family, 49.7 11 0.00023 37.1 2.1 24 137-160 14-37 (178)
309 TIGR00162 conserved hypothetic 49.7 3E+02 0.0064 28.3 12.6 140 110-267 15-165 (188)
310 PRK13271 treA trehalase; Provi 49.3 47 0.001 39.9 7.6 47 622-668 342-395 (569)
311 PF04685 DUF608: Protein of un 48.6 70 0.0015 36.2 8.6 106 544-666 99-217 (365)
312 PTZ00062 glutaredoxin; Provisi 47.4 71 0.0015 33.3 7.7 71 131-218 106-180 (204)
313 PF01270 Glyco_hydro_8: Glycos 45.8 2.3E+02 0.0049 31.7 12.1 131 586-727 75-211 (342)
314 PF13462 Thioredoxin_4: Thiore 45.6 26 0.00056 33.7 4.0 35 136-172 10-44 (162)
315 PLN03009 cellulase 45.2 6E+02 0.013 30.2 17.5 124 578-719 112-265 (495)
316 TIGR01535 glucan_glucosid gluc 45.2 6.8E+02 0.015 30.8 20.5 95 536-660 349-450 (648)
317 PF06053 DUF929: Domain of unk 43.8 12 0.00027 40.1 1.5 58 136-213 56-115 (249)
318 PRK10954 periplasmic protein d 41.8 32 0.00069 35.4 4.2 43 138-181 37-80 (207)
319 cd03036 ArsC_like Arsenate Red 41.6 26 0.00057 32.5 3.2 58 144-215 3-61 (111)
320 TIGR01561 gde_arch glycogen de 41.3 4.4E+02 0.0096 31.9 14.1 139 583-728 313-469 (575)
321 KOG0366 Protein geranylgeranyl 40.6 5.3E+02 0.011 28.3 15.6 72 586-670 213-284 (329)
322 cd00570 GST_N_family Glutathio 39.9 86 0.0019 24.5 5.7 60 144-219 3-62 (71)
323 PRK05778 2-oxoglutarate ferred 39.8 1.2E+02 0.0026 33.6 8.4 56 124-180 179-234 (301)
324 PF13243 Prenyltrans_1: Prenyl 38.3 8.1 0.00017 35.0 -0.8 39 385-424 28-66 (109)
325 PRK01655 spxA transcriptional 36.3 38 0.00083 32.6 3.5 59 143-215 3-62 (131)
326 PF05426 Alginate_lyase: Algin 36.0 5.5E+02 0.012 27.1 14.6 36 376-411 52-87 (272)
327 COG4545 Glutaredoxin-related p 34.6 80 0.0017 28.0 4.7 65 138-219 2-78 (85)
328 cd02977 ArsC_family Arsenate R 34.1 32 0.00069 31.3 2.5 61 143-217 2-63 (105)
329 COG1225 Bcp Peroxiredoxin [Pos 33.9 1.1E+02 0.0023 30.8 6.3 49 131-182 23-73 (157)
330 cd03031 GRX_GRX_like Glutaredo 33.7 82 0.0018 31.1 5.4 32 149-190 15-47 (147)
331 PLN02567 alpha,alpha-trehalase 33.7 6.3E+02 0.014 30.4 13.8 103 543-658 328-441 (554)
332 PF04545 Sigma70_r4: Sigma-70, 33.2 69 0.0015 25.1 4.0 28 500-527 23-50 (50)
333 PRK12559 transcriptional regul 31.9 42 0.00092 32.3 3.0 61 142-216 2-63 (131)
334 PF02114 Phosducin: Phosducin; 31.1 79 0.0017 34.3 5.2 66 139-219 147-213 (265)
335 PF04685 DUF608: Protein of un 30.8 1.3E+02 0.0028 34.2 7.1 101 616-725 95-208 (365)
336 COG3387 SGA1 Glucoamylase and 30.4 1.1E+03 0.023 28.9 16.2 207 400-666 241-469 (612)
337 KOG0365 Beta subunit of farnes 30.1 2.8E+02 0.006 31.4 9.1 76 335-431 119-198 (423)
338 PRK10137 alpha-glucosidase; Pr 29.8 1.2E+03 0.027 29.3 29.2 56 539-606 577-632 (786)
339 PF01204 Trehalase: Trehalase; 29.3 86 0.0019 37.2 5.6 43 626-668 317-363 (512)
340 COG3408 GDB1 Glycogen debranch 29.3 7.5E+02 0.016 30.4 13.6 141 583-729 303-463 (641)
341 TIGR02393 RpoD_Cterm RNA polym 28.9 1.1E+02 0.0024 32.1 5.9 28 500-527 199-226 (238)
342 PLN02909 Endoglucanase 28.3 1.1E+03 0.023 28.1 16.8 75 579-655 120-221 (486)
343 TIGR00161 conserved hypothetic 28.1 2.5E+02 0.0055 29.8 8.4 129 119-268 88-222 (238)
344 cd03041 GST_N_2GST_N GST_N fam 28.0 1E+02 0.0022 26.2 4.5 62 144-219 4-65 (77)
345 cd02983 P5_C P5 family, C-term 27.9 1.7E+02 0.0037 28.1 6.4 43 165-215 48-93 (130)
346 PF07449 HyaE: Hydrogenase-1 e 27.4 32 0.00068 32.3 1.2 68 138-219 26-97 (107)
347 PF03200 Glyco_hydro_63: Manno 27.4 3.1E+02 0.0068 34.5 10.1 50 623-672 565-618 (801)
348 cd03013 PRX5_like Peroxiredoxi 27.3 1.2E+02 0.0026 29.8 5.4 20 137-156 28-48 (155)
349 PRK05901 RNA polymerase sigma 27.2 1.1E+02 0.0023 36.4 5.8 46 460-527 452-497 (509)
350 PLN02340 endoglucanase 26.1 1.3E+03 0.028 28.3 16.5 120 579-719 116-264 (614)
351 cd03055 GST_N_Omega GST_N fami 25.6 2.2E+02 0.0047 25.0 6.3 62 142-219 19-80 (89)
352 PRK13272 treA trehalase; Provi 25.4 1.2E+03 0.026 28.2 13.9 97 544-665 341-441 (542)
353 PLN02175 endoglucanase 25.4 1.2E+03 0.026 27.7 15.7 121 579-718 108-258 (484)
354 PRK13270 treF trehalase; Provi 25.2 2.5E+02 0.0055 33.7 8.4 47 622-668 352-405 (549)
355 TIGR02177 PorB_KorB 2-oxoacid: 25.0 3.2E+02 0.0069 30.1 8.6 98 126-248 164-267 (287)
356 KOG3760 Heparan sulfate-glucur 24.6 80 0.0017 36.0 3.8 81 579-662 376-462 (594)
357 PF03792 PBC: PBC domain; Int 24.2 5.7E+02 0.012 26.5 9.5 132 152-297 34-168 (191)
358 KOG2429 Glycosyl hydrolase, fa 23.4 3.9E+02 0.0085 32.0 9.1 166 579-758 151-332 (622)
359 PRK05949 RNA polymerase sigma 23.2 2.3E+02 0.0049 31.6 7.2 46 460-527 271-316 (327)
360 TIGR01617 arsC_related transcr 23.2 1.2E+02 0.0025 28.3 4.3 59 144-216 3-62 (117)
361 PF00837 T4_deiodinase: Iodoth 23.0 1.6E+02 0.0034 31.6 5.5 20 135-154 99-118 (237)
362 PRK07405 RNA polymerase sigma 22.9 2.3E+02 0.005 31.4 7.2 29 499-527 278-306 (317)
363 PRK07921 RNA polymerase sigma 22.8 2.3E+02 0.005 31.6 7.2 53 453-527 256-312 (324)
364 KOG1672 ATP binding protein [P 22.8 1.3E+02 0.0028 31.3 4.7 73 128-217 75-150 (211)
365 cd03037 GST_N_GRX2 GST_N famil 22.7 1.5E+02 0.0032 24.5 4.4 59 144-219 3-61 (71)
366 PF08281 Sigma70_r4_2: Sigma-7 21.3 1.3E+02 0.0027 23.8 3.5 26 500-525 29-54 (54)
367 PHA02881 hypothetical protein; 20.9 60 0.0013 31.0 1.7 58 140-212 102-159 (161)
368 PF04967 HTH_10: HTH DNA bindi 20.5 1.6E+02 0.0034 24.2 3.9 28 499-526 25-52 (53)
369 TIGR02997 Sig70-cyanoRpoD RNA 20.5 2.2E+02 0.0048 31.0 6.4 51 453-525 243-297 (298)
370 PLN02710 farnesyltranstransfer 20.0 9.6E+02 0.021 28.1 11.5 116 280-423 89-210 (439)
No 1
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-163 Score=1381.68 Aligned_cols=619 Identities=46% Similarity=0.787 Sum_probs=591.2
Q ss_pred cccccccccCCChhhhcccCCCcccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEE
Q 003940 99 NKHTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIK 178 (784)
Q Consensus 99 ~~~~NrL~~e~SpYL~qha~~~v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~Vk 178 (784)
..++|||++|+|||||||++|||+|++|++|||++||+|||||||+|||+||||||||++|+|+||+||++||++||+||
T Consensus 4 ~~~~NrL~~e~SpYL~~ha~nPV~W~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IK 83 (667)
T COG1331 4 PSMPNRLINEKSPYLLQHAHNPVDWYPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVK 83 (667)
T ss_pred CCcCccCccCCCHHHHhccCCCccccccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeee
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHHHHhhchHHHHHHHHH
Q 003940 179 VDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAF 258 (784)
Q Consensus 179 vD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~~~l~~~a~~ 258 (784)
||||||||||++||+++|+++|+||||++|||||||+||+++||+|+++++|+|||+++|++|.+.|+++|++++++|++
T Consensus 84 VDREERPDvD~~Ym~~~q~~tG~GGWPLtVfLTPd~kPFfagTY~P~e~r~g~pGf~~lL~~i~~~W~edr~~~~~~a~~ 163 (667)
T COG1331 84 VDREERPDVDSLYMNASQAITGQGGWPLTVFLTPDGKPFFAGTYFPKEDRYGRPGFKQLLEAIRETWREDREELLQSAER 163 (667)
T ss_pred EChhhccCHHHHHHHHHHHhccCCCCceeEEECCCCceeeeeeecCCcccCCCcCHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCcHHHH
Q 003940 259 AIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQ 338 (784)
Q Consensus 259 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~~~GGfg~aPKFP~p~~l~~Ll~~~~~~~~~~~~~~~~~~~ 338 (784)
+.+.++....+. ....++.+.++.++++|.+.||++|||||++||||+|+.+.|||+++.+++ +++++
T Consensus 164 ~~~~l~~~~~~~-----~~~~l~~~~l~~~~~~l~~~~D~~~GGfg~~pKFP~~~~l~~Llr~~~~~~-------d~~~~ 231 (667)
T COG1331 164 VLEALEGLARPS-----AGEELDEEVLDRAAEALARSFDREYGGFGSAPKFPPPHLLLFLLRYSLRTG-------DERAL 231 (667)
T ss_pred HHHHHHhccCCC-----ccccCChHHHHHHHHHHHHhcchhhCCcCCCCCCCChHHHHHHHHHHHhhC-------CHHHH
Confidence 999998765221 123456778999999999999999999999999999999999999988753 37999
Q ss_pred HHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccC
Q 003940 339 KMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIG 418 (784)
Q Consensus 339 ~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~ 418 (784)
+|+++||++|+.||||||+||||||||||+.|.||||||||||||+|+.+|++||+.|||+.|+++|++|++||+|+|+.
T Consensus 232 ~~~~~TL~~ma~GGIyDhlgGGF~RYStD~~WlvPHFEKMLyDnA~l~~~y~~ay~~tgd~~y~~~a~~i~~~l~rel~s 311 (667)
T COG1331 232 DMVLRTLDAMARGGIYDHLGGGFFRYSTDREWLVPHFEKMLYDNALLLRAYAEAYRATGDDLYRRAAEGILDYLLRELYS 311 (667)
T ss_pred HHHHHHHHHHHccCCccccCCceeeeecCCceechhHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeecccCCCccccccccccCCceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccC
Q 003940 419 PGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELN 498 (784)
Q Consensus 419 ~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~ 498 (784)
|+||||+|+|||+. ++||+||+||.+||+++||+++++|+++|+|+++|| |+|+||||+..
T Consensus 312 p~ggFyss~DAD~~-------g~EG~~Y~Ws~eEi~~~Lg~d~~~~~~~f~vs~~Gn------------feGrnvL~~~~ 372 (667)
T COG1331 312 PEGGFYSSLDADSD-------GEEGKYYTWSVEELKEVLGEDAELACKYFDVSEEGN------------FEGRNVLHVPG 372 (667)
T ss_pred CCCceeecccccCc-------ccCCCeeecCHHHHHHHhcccHHHHHHHcccCCCCC------------cCCceeecccC
Confidence 99999999999994 689999999999999999999999999999999999 67999999998
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCh
Q 003940 499 DSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDR 578 (784)
Q Consensus 499 ~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~ 578 (784)
+.++ + +++..+.++.+|+||++.|++|++|++||||+|+|||+||.||+.|++++++
T Consensus 373 ~~~~-~------~~~~~~~l~~~r~kL~~~R~~R~~P~~Ddkvlt~wNglmi~aLa~a~~~~~d---------------- 429 (667)
T COG1331 373 PLEE-A------IEEAEEKLERAREKLLAAREKRKQPSRDDKVLTDWNGLMIAALAEAGRVLGD---------------- 429 (667)
T ss_pred chhh-h------hhhhHHHHHHHHHHHHHHHHhCCCCCCCcceeeccHHHHHHHHHHHHHHcCC----------------
Confidence 8765 1 7888999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc
Q 003940 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 658 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D 658 (784)
++|++.|+++++||.+.+++ ++|.|.+++|.....++++|||++|.|+|+||++|+|.+||+.|++|++.+..+|||
T Consensus 430 ~~~l~~A~~~~~fi~~~l~~---~rl~~~~~~G~a~~~g~leDYA~~i~gll~lye~t~d~~yL~~A~~L~~~~i~~f~d 506 (667)
T COG1331 430 PEYLEAAERAADFILDNLYV---DRLLRRYRGGEAAVAGLLEDYAFLILGLLALYEATGDLAYLEKAIELADEAIADFWD 506 (667)
T ss_pred hHHHHHHHHHHHHHHHhhcc---cchheeeecCcccccccchhHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999999999997 389999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 003940 659 REGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMC 738 (784)
Q Consensus 659 ~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~~p~~~~~~~ 738 (784)
++ ||||++++.++.+++|+++..|+++||+||+++.+|++|+.+|++ ..|.+.|+++|++|.+.+.++|.+++.++
T Consensus 507 ~~-gGf~~t~~~~~~l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~---~~y~e~A~~~L~a~~~~~~~~p~~~~~~~ 582 (667)
T COG1331 507 DE-GGFYDTPSDSEDLLIRPKEPTDGATPSGNAVAAQALLRLSLLTGD---ARYLEAAEDILQAFAGLAERAPFAHAGLL 582 (667)
T ss_pred CC-CCcccCCCcccccccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCc---hhHHHHHHHHHHHHHHHHHhCCccchHHH
Confidence 98 779999999999999999999999999999999999999999996 89999999999999999999999999999
Q ss_pred HHHHHhcCCCceEEEEEcCCCChhHHHHHHHHHhcCCCCeeEEec
Q 003940 739 CAADMLSVPSRKHVVLVGHKSSVDFENMLAAAHASYDLNKTVSKK 783 (784)
Q Consensus 739 ~a~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~p~~~~~~~ 783 (784)
.|++.+..+ ..+|||+| ....++++++.+.|+|++++++.
T Consensus 583 ~a~~~~~~~-~~~ivvv~----~~~~~~~~~~~~~~~P~~~l~~~ 622 (667)
T COG1331 583 LAAEFLISG-PLVIVVAG----DPRSELLRAALRLYLPEKVLVVG 622 (667)
T ss_pred HHHHHHcCC-ceEEEEeC----CCcHHHHHHHHhcCCcceEEEEe
Confidence 999999866 58888998 34578999999999999999875
No 2
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=100.00 E-value=3.2e-162 Score=1312.76 Aligned_cols=665 Identities=60% Similarity=1.006 Sum_probs=617.6
Q ss_pred cccCccchhhcccCCCCCC-----CCCCcccccccccCCChhhhcccCCCcccccchHHHHHHHhhcCCcEEEEEcccCC
Q 003940 76 RPIHPYKVVAMAERTPAST-----SHSRNKHTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTC 150 (784)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~NrL~~e~SpYL~qha~~~v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC 150 (784)
|++..++++-|+.++..+- +.. +..|||+.++||||+|||.|||+|+||++||+++|++|||||||++||++|
T Consensus 47 Rs~~~~s~~pm~~gg~~sh~sS~~~~v--~~~nRli~skspyllqhaynpvdwypwgqeaf~kar~enkpifLsvgystc 124 (786)
T KOG2244|consen 47 RSIASLSTLPMRRGGVRSHNSSFSSPV--PPLNRLISSKSPYLLQHAYNPVDWYPWGQEAFNKARAENKPIFLSVGYSTC 124 (786)
T ss_pred cccccccccccccCceecCCCCccCCC--CccccccccCCcchhhhccCCcccCcchHHHHHHHHhcCCCEEEEcccccc
Confidence 4455566666666654332 222 236999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCC
Q 003940 151 HWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYG 230 (784)
Q Consensus 151 ~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~~tY~p~~~~~~ 230 (784)
||||+||+|+|+|++++++||++||.||||||||||+|++||.++++..|.||||+.||||||.+|+.+||||||++.+|
T Consensus 125 hwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGWPmsV~LTPdL~PlvgGTYFPP~d~~g 204 (786)
T KOG2244|consen 125 HWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGWPMSVFLTPDLKPLVGGTYFPPNDNYG 204 (786)
T ss_pred hheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCCceeEEeCCCcccccCCcccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCC
Q 003940 231 RPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSRFGGFGSAPKFP 310 (784)
Q Consensus 231 ~~~f~~~L~~i~~~~~~~~~~l~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~~~GGfg~aPKFP 310 (784)
+|+|.++|++|++.|..+|+.+++.+..+++.|++++++.+.. . +.+++++...++.+.||||.+||||
T Consensus 205 ~~gF~TvL~~I~~~w~~kr~tllet~~~~is~ls~al~peaa~-------g----~~~~ekl~e~i~~~~qGfg~apKFP 273 (786)
T KOG2244|consen 205 RPGFKTVLKKIKDAWNSKRDTLLETGTYAISELSKALSPEAAT-------G----DNRAEKLSEGISREAQGFGEAPKFP 273 (786)
T ss_pred CccHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHhhcCccccc-------c----chhHHHHHHHHHHHhhhhccCCCCC
Confidence 9999999999999999999999999999988888655422110 1 2456889999999999999999999
Q ss_pred ChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHH
Q 003940 311 RPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYL 390 (784)
Q Consensus 311 ~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya 390 (784)
.+..|.||+.+... +++++.+.|+++||+.|+.|||+|||||||||||||+.|+|||||||||||+||+.+|+
T Consensus 274 ~~~~L~FLf~~~lt-------~k~~d~~~Mvl~TL~~manGGihDHIg~GFhRYsv~~~WHvpHFEKMLYDQ~QL~~ays 346 (786)
T KOG2244|consen 274 KACDLDFLFTFNLT-------SKADDEKSMVLFTLQGMANGGIHDHIGGGFHRYSVDECWHVPHFEKMLYDQGQLANAYS 346 (786)
T ss_pred Cccccceeeeeccc-------ccCcHHHHHHHHHHHHHhcCCccccccCceeeccccccccchhHHHHHhhHHHHHHHHH
Confidence 99999999887543 23578999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCChHHHHHHHHHHHHHHHhccCCCCceeecccCCCccccccccccCCceEEechHHHHHHhhhh-------HHH
Q 003940 391 DAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH-------AIL 463 (784)
Q Consensus 391 ~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~-------~~l 463 (784)
+||++|+|+.|..+|+++++||.++|.+|+||||+++||||.|.++++.++|||||+||.+||+++||+. +++
T Consensus 347 dafklT~de~y~~va~~I~qYl~rdlsh~~GGfysaEDADSlp~h~~k~k~EGAfyaWt~dEIqqll~e~~i~p~~~fdl 426 (786)
T KOG2244|consen 347 DAFKLTKDEMYSYVARDILQYLRRDLSHPEGGFYSAEDADSLPFHGAKRKKEGAFYAWTSDEIQQLLGENAIGPASLFDL 426 (786)
T ss_pred hhhhcchhHHHHHHHHHHHHHHHHhccCCCCCcccccccCCCcccccccccccceEEeeHHHHHHHhCCCCCCcchHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999975 499
Q ss_pred HHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhh
Q 003940 464 FKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIV 543 (784)
Q Consensus 464 ~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiit 543 (784)
++.+|||++.||+ ++.+||||++.|||||.++.+.++.|..|+++++++++.|.+++++|.++|.+||+|++|+|||+
T Consensus 427 ~a~hygvk~sGnv--s~ssDPhgel~gkNVL~vr~s~e~taanf~lsve~~kkll~e~~e~L~~aR~kRPkPHLDsKii~ 504 (786)
T KOG2244|consen 427 FAEHYGVKKSGNV--SSSSDPHGELAGKNVLIVRNSTEATAANFSLSVEKYKKLLGECREKLFDARLKRPKPHLDSKIIV 504 (786)
T ss_pred HHHHcCCCCCCCC--CCCCCCcccccCceEEEEecchHhhHhhccccHHHHHHHHHHHHHHHHHHhhcCCCCCccchhee
Confidence 9999999999996 57899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE-EecCCCC---------
Q 003940 544 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH-SFRNGPS--------- 613 (784)
Q Consensus 544 sWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~-~~~dg~~--------- 613 (784)
+||||+|++|++++++++.+ ++|++.|..+++|+.++++|...+.|.+ +.++|..
T Consensus 505 sWnGLviSgl~kag~~~~a~---------------~~y~~~a~~~a~fl~k~m~d~~eklliR~scY~ga~g~ve~~n~~ 569 (786)
T KOG2244|consen 505 SWNGLVISGLAKAGKILKAE---------------PEYTKYAFPVANFLPKDMIDVAEKLLIRGSCYDGASGRVEHSNRP 569 (786)
T ss_pred eccchhhHHHHHHHHHhhcC---------------HHHHHHHHHHHhhhhhhhhchhhhheeecccccCCCcceeccCCc
Confidence 99999999999999999872 6999999999999999999987777777 5444321
Q ss_pred -CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHH
Q 003940 614 -KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSV 692 (784)
Q Consensus 614 -~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv 692 (784)
..++|++||||+|.|||+||+++|+.+||+||++|++++..+||| +||||.+..+++++++|.|+++|||+||+|||
T Consensus 570 ~~~~~FldDYAFlI~gLLDlYea~~~~e~LkwA~~LQdtqdklFWd--gggYF~Se~~~~~v~vRlkeDhDGAEPs~nSV 647 (786)
T KOG2244|consen 570 SKAPAFLDDYAFLISGLLDLYEAGGGIEWLKWAIKLQDTQDKLFWD--GGGYFISEKTDEDVSVRLKEDHDGAEPSGNSV 647 (786)
T ss_pred cccchhhhhHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHheec--CCceeeeeccCCCcceeeccccCCCCCCccch
Confidence 335799999999999999999999999999999999999999999 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCCceEEEEEcCCCChhHHHHHHHHHh
Q 003940 693 SVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCCAADMLSVPSRKHVVLVGHKSSVDFENMLAAAHA 772 (784)
Q Consensus 693 ~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~~p~~~~~~~~a~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~ 772 (784)
.++||+||+.+++. +.|++.|.++|..|+.++.+.|.++|.|++|+.+. .++.++|||||+++++++.+++.++++
T Consensus 648 sahNLvrL~~~~~~---e~yl~ka~~ll~~fseRl~~vpvAlPeM~~Al~~~-q~glk~vvlvGd~~s~d~~~~vs~~~s 723 (786)
T KOG2244|consen 648 SAHNLVRLASIVAA---ESYLNKAHRLLAVFSERLREVPVALPEMCCALMIS-QPGLKQVVLVGDKSSPDLTNMVSAAHS 723 (786)
T ss_pred hhhhHHHHHHHhhH---HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHhh-ccCcceEEEECCCCChHHHHHHHHHHH
Confidence 99999999999985 89999999999999999999999999999988666 466899999999999999999999999
Q ss_pred cCCCCeeEEec
Q 003940 773 SYDLNKTVSKK 783 (784)
Q Consensus 773 ~~~p~~~~~~~ 783 (784)
.|+||++||++
T Consensus 724 ~yipn~~vihi 734 (786)
T KOG2244|consen 724 VYIPNKTVIHI 734 (786)
T ss_pred hcCCcceEEEe
Confidence 99999999997
No 3
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=100.00 E-value=3.8e-55 Score=427.75 Aligned_cols=163 Identities=61% Similarity=1.166 Sum_probs=134.6
Q ss_pred ccccccCCChhhhcccCCCcccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcC
Q 003940 102 TNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR 181 (784)
Q Consensus 102 ~NrL~~e~SpYL~qha~~~v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ 181 (784)
+|||+.|+||||+||+++||+|++|++||+++||+|+|||||+||++||||||+|+++||+||+|+++||++||+||||+
T Consensus 1 ~N~l~~~~Spyl~~ha~~~V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDr 80 (163)
T PF03190_consen 1 TNRLANSKSPYLRQHAHNPVNWQPWGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDR 80 (163)
T ss_dssp --GGGG---HHHHTTTTSSS--B-SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEET
T ss_pred CCccccCCCHHHHHhccCCCCcccCCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEecc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHHHHhhchHHHHHHHHHHHH
Q 003940 182 EERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIE 261 (784)
Q Consensus 182 ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~~~l~~~a~~~~~ 261 (784)
||+||++..||.++|+++|.+|||++|||||+|+||+++||+||+++.|+++|+++|++|++.|+++|++|++.|++|.+
T Consensus 81 ee~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~~~~tY~P~~~~~g~~~f~~~l~~i~~~w~~~~~~~~~~a~~i~~ 160 (163)
T PF03190_consen 81 EERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFFGGTYFPPEDRYGRPGFLQLLERIAELWKENREQVEESADEILE 160 (163)
T ss_dssp TT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EEEEESS--SS-BTTB--HHHHHHHHHHHHHHSHHHHHHHHHHT-S
T ss_pred ccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCeeeeeeecCCCCCCCCccHHHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHH
Q 003940 262 QLS 264 (784)
Q Consensus 262 ~l~ 264 (784)
+|+
T Consensus 161 ~l~ 163 (163)
T PF03190_consen 161 ALQ 163 (163)
T ss_dssp HH-
T ss_pred hhC
Confidence 774
No 4
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.97 E-value=1.1e-31 Score=254.01 Aligned_cols=123 Identities=73% Similarity=1.394 Sum_probs=119.5
Q ss_pred ccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003940 124 FAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (784)
Q Consensus 124 ~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G 203 (784)
++|+++|+++|+++||||||+|+++||+|||+|++++|+||+|++.||++||+|+||+++.|++.+.|++..+..+|++|
T Consensus 1 ~~~~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 1 YPWGEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred CCCCHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999998888889999
Q ss_pred CCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHHHHh
Q 003940 204 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD 246 (784)
Q Consensus 204 ~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~~~~ 246 (784)
+|++||++|+|+++++++|+|+++.++.++|.++|++|.+.|.
T Consensus 81 ~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (124)
T cd02955 81 WPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRELWR 123 (124)
T ss_pred CCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999997
No 5
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.92 E-value=2.2e-23 Score=231.09 Aligned_cols=301 Identities=17% Similarity=0.149 Sum_probs=229.2
Q ss_pred CcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceeecccCCC
Q 003940 353 IHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDADS 431 (784)
Q Consensus 353 i~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~-Ggfysa~DADS 431 (784)
..|+..|||+- ++|.++.+..-.|-+|.||++|++|+.+|++++++.|++.|+++++||.+++++++ ||++.+.|.|+
T Consensus 27 ~~d~~~gg~~~-~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~~~~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~~~g 105 (384)
T cd00249 27 GLDREAGGFFE-CLDRDGQPFDTDRRLWLQARQVYCFAVAYLLGWRPEWLEAAEHGLEYLDRHGRDPDHGGWYFALDQDG 105 (384)
T ss_pred CCCCCCCCeEE-EECCCCCCCCCCCeEEEecHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHhCcCCCCCCEEEEEcCCC
Confidence 47888899985 88889987666999999999999999999999999999999999999999999988 99999999888
Q ss_pred ccccccccccCCceEEechHHHHHHhhhh--HHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCC
Q 003940 432 AETEGATRKKEGAFYVWTSKEVEDILGEH--AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGM 509 (784)
Q Consensus 432 ~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~--~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~ 509 (784)
.+.+..+..++.+|.++...++.+++++. .+.+.+.+.+
T Consensus 106 ~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~--------------------------------------- 146 (384)
T cd00249 106 RPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDL--------------------------------------- 146 (384)
T ss_pred CCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---------------------------------------
Confidence 77666667788889999988888888742 1222222211
Q ss_pred CHHHHHHHHHHHHHHHHhhhcCCCC--CCCCchhhhchHHHH--HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHH
Q 003940 510 PLEKYLNILGECRRKLFDVRSKRPR--PHLDDKVIVSWNGLV--ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVA 585 (784)
Q Consensus 510 ~~~~l~~~l~~~r~kL~~~R~~R~~--P~lDdKiitsWNal~--I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A 585 (784)
+.++++ ....... ...|+..+-+.|..| +.+|.++++++++ ++|++.|
T Consensus 147 -----------l~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~h~~~all~l~~~tgd----------------~~~~~~A 198 (384)
T cd00249 147 -----------LERRFW-EDHPGAFDEADPGTPPYRGSNPHMHLLEAMLAAYEATGE----------------QKYLDRA 198 (384)
T ss_pred -----------HHHHhc-cCCCcccCCCCCCCCCCCCCChhHHHHHHHHHHHHHhCC----------------HHHHHHH
Confidence 111111 0000000 000011112234444 8899999999998 7899999
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCCCC------CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Q 003940 586 ESAASFIRRHLYDEQTHRLQHSFRNGPS------KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 659 (784)
Q Consensus 586 ~~~a~~l~~~l~d~~~G~l~~~~~dg~~------~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~ 659 (784)
+++.+.+.++++++++|+++..+.++.. .....+.-.+.++.++++++++++++.|++.|+++++.+.++++|+
T Consensus 199 ~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~~~~~~~a~~~~~~~~~~~~d~ 278 (384)
T cd00249 199 DEIADLILDRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQAWLIEKARRLFDLALALGWDP 278 (384)
T ss_pred HHHHHHHHHHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCcCc
Confidence 9999999999998878888876644311 1112233356678899999999999999999999999999999999
Q ss_pred CCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHH
Q 003940 660 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKD 729 (784)
Q Consensus 660 ~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~ 729 (784)
++|++|.+..++... ...|++.+++++.++.+++.|+.++|+ +.|.+.++++++........
T Consensus 279 ~~G~~~~~~~~~~~~-----~~~~~~~~w~~~E~~~a~~~l~~~tgd---~~~~~~~~~~~~~~~~~~~d 340 (384)
T cd00249 279 ERGGLYYSFLDDGGL-----LEDDDKRWWPQTEALKAALALAGITGD---ERYWQWYQRAWAYLWRHFID 340 (384)
T ss_pred cCCCEEEeeECCCCC-----cccccccccHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHhcCC
Confidence 999888833222221 245799999999999999999999985 78999999998888665543
No 6
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=99.87 E-value=7.4e-20 Score=202.97 Aligned_cols=316 Identities=16% Similarity=0.065 Sum_probs=217.3
Q ss_pred HHHHHHHHHh-hccccCCCCCCC------C----CCCCh--hHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcC
Q 003940 285 LRLCAEQLSK-SYDSRFGGFGSA------P----KFPRP--VEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKG 351 (784)
Q Consensus 285 l~~~~~~l~~-~~D~~~GGfg~a------P----KFP~p--~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~G 351 (784)
+++++..+.. .+|+++|||... | |.-.. =.+..+...+... .+++.++++.++++-|..
T Consensus 16 ~~~~~~fw~~~~~d~~~gg~~~~l~~~g~~~~~~k~~~~~ar~i~~~a~a~~~~-------~~~~~l~~A~~~~~fl~~- 87 (384)
T cd00249 16 LEDLLPFWLEAGLDREAGGFFECLDRDGQPFDTDRRLWLQARQVYCFAVAYLLG-------WRPEWLEAAEHGLEYLDR- 87 (384)
T ss_pred HHHHHHHHHhcCCCCCCCCeEEEECCCCCCCCCCCeEEEecHHHHHHHHHHHhc-------CChhHHHHHHHHHHHHHH-
Confidence 4556666766 689999999552 2 22111 1122222233322 246789999999998887
Q ss_pred CCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeecccCCC
Q 003940 352 GIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADS 431 (784)
Q Consensus 352 Gi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfysa~DADS 431 (784)
-.+|...|||++ ++|++|.+.+..|.|||+|.++.+|+.+|++++++.|++.|+++++++.++++++.||+|...+.|.
T Consensus 88 ~~~d~~~Gg~~~-~~~~~g~~~~~~~~l~~~a~~l~ala~~~~at~d~~~l~~A~~~~~~l~~~~~~~~g~~~~~~~~~~ 166 (384)
T cd00249 88 HGRDPDHGGWYF-ALDQDGRPVDATKDLYSHAFALLAAAQAAKVGGDPEARALAEETIDLLERRFWEDHPGAFDEADPGT 166 (384)
T ss_pred hCcCCCCCCEEE-EEcCCCCCcccccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCC
Confidence 456766699986 8888999888899999999999999999999999999999999999999999855577775544432
Q ss_pred ccccccccccCCceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCH
Q 003940 432 AETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPL 511 (784)
Q Consensus 432 ~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~ 511 (784)
.+ .++. -. + ....+.+.+.+.++.+.. ..
T Consensus 167 ~~-------~~~~---~~---~----~h~~~all~l~~~tgd~~----------------------------------~~ 195 (384)
T cd00249 167 PP-------YRGS---NP---H----MHLLEAMLAAYEATGEQK----------------------------------YL 195 (384)
T ss_pred CC-------CCCC---Ch---h----HHHHHHHHHHHHHhCCHH----------------------------------HH
Confidence 11 0100 00 0 000111222222221000 01
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCC-----------CCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHH
Q 003940 512 EKYLNILGECRRKLFDVRSKRPRPH-----------LDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKE 580 (784)
Q Consensus 512 ~~l~~~l~~~r~kL~~~R~~R~~P~-----------lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~ 580 (784)
+...+.++.+.+++.+....+..-. ..+-+.-+-|.-++++|.++++++++ ++
T Consensus 196 ~~A~~l~~~~~~~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~Pgh~~e~a~~ll~l~~~~~~----------------~~ 259 (384)
T cd00249 196 DRADEIADLILDRFIDAESGVVREHFDEDWNPYNGDKGRHQEPGHQFEWAWLLLRIASRSGQ----------------AW 259 (384)
T ss_pred HHHHHHHHHHHHHhcCcccCeEEEEECCCCCCCcCcCCCcCCCchHHHHHHHHHHHHhhcCC----------------HH
Confidence 2333445555555544332222111 11112233467788999999999987 78
Q ss_pred HHHHHHHHHHHHHHhccccCCCeEEEEe-c-CC-CCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 003940 581 YMEVAESAASFIRRHLYDEQTHRLQHSF-R-NG-PSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 657 (784)
Q Consensus 581 yle~A~~~a~~l~~~l~d~~~G~l~~~~-~-dg-~~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~ 657 (784)
|++.|+++.+++.++++|+++|+++.+. . +| .....+.++.++.+|.+++.+|++|||++|+++++++++.+..+|+
T Consensus 260 ~~~~a~~~~~~~~~~~~d~~~G~~~~~~~~~~~~~~~~~~~~w~~~E~~~a~~~l~~~tgd~~~~~~~~~~~~~~~~~~~ 339 (384)
T cd00249 260 LIEKARRLFDLALALGWDPERGGLYYSFLDDGGLLEDDDKRWWPQTEALKAALALAGITGDERYWQWYQRAWAYLWRHFI 339 (384)
T ss_pred HHHHHHHHHHHHHHhCcCccCCCEEEeeECCCCCcccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999888888843 2 33 2244688899999999999999999999999999999999999999
Q ss_pred ccCCCcccccCCCCCcccc
Q 003940 658 DREGGGYFNTTGEDPSVLL 676 (784)
Q Consensus 658 D~~~Ggyf~t~~~~~~l~~ 676 (784)
|++.|+||+.-+.+..+..
T Consensus 340 d~~~G~w~~~~~~~g~~~~ 358 (384)
T cd00249 340 DPEYGLWFGYLDADGKVLL 358 (384)
T ss_pred CCCCCcceeeECCCCCCcC
Confidence 9999999987665555443
No 7
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.81 E-value=4.8e-20 Score=175.23 Aligned_cols=91 Identities=19% Similarity=0.325 Sum_probs=78.8
Q ss_pred CCcccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCc-cHHHHHHHHHHH
Q 003940 119 NPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP-DVDKVYMTYVQA 197 (784)
Q Consensus 119 ~~v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~p-di~~~y~~~~q~ 197 (784)
..|+|.+.+++|++.||++||||||+|+++||++|++|++++|+|++|++++|++||.|++|.+... ... .
T Consensus 4 ~~i~W~~~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~-~------- 75 (130)
T cd02960 4 DDIIWVQTYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS-P------- 75 (130)
T ss_pred ccccchhhHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC-c-------
Confidence 4699998889999999999999999999999999999999999999999999999999999876331 111 0
Q ss_pred hcCCCCCCcEEEECCCCceecc
Q 003940 198 LYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 198 ~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
.| .|+|+++|++|+|+++..
T Consensus 76 -~g-~~vPtivFld~~g~vi~~ 95 (130)
T cd02960 76 -DG-QYVPRIMFVDPSLTVRAD 95 (130)
T ss_pred -cC-cccCeEEEECCCCCCccc
Confidence 13 589999999999988754
No 8
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.78 E-value=2e-19 Score=157.83 Aligned_cols=82 Identities=35% Similarity=0.577 Sum_probs=72.1
Q ss_pred ccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCC
Q 003940 122 DWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG 201 (784)
Q Consensus 122 ~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~ 201 (784)
+|++++++|+++|+++||||||.|+++||++|+.|++++|++++|.++++++||+|+||.++.....+.+ +
T Consensus 1 ~W~~d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~--------~- 71 (82)
T PF13899_consen 1 NWQSDYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFD--------R- 71 (82)
T ss_dssp -EESSHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHH--------H-
T ss_pred ChhhhHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhC--------C-
Confidence 5999999999999999999999999999999999999999999999999999999999997543322222 1
Q ss_pred CCCCcEEEECC
Q 003940 202 GGWPLSVFLSP 212 (784)
Q Consensus 202 ~G~P~~vfl~p 212 (784)
.|+|+++|++|
T Consensus 72 ~~~P~~~~ldp 82 (82)
T PF13899_consen 72 QGYPTFFFLDP 82 (82)
T ss_dssp CSSSEEEEEET
T ss_pred ccCCEEEEeCC
Confidence 47999999997
No 9
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=99.77 E-value=4.1e-19 Score=195.36 Aligned_cols=296 Identities=19% Similarity=0.169 Sum_probs=193.0
Q ss_pred eEEEEecCCCCCC-CCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceeecccCCCcccccc
Q 003940 360 GFHRYSVDERWHV-PHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDADSAETEGA 437 (784)
Q Consensus 360 GF~RYsvD~~W~v-PHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~-Ggfysa~DADS~~~~~~ 437 (784)
|||. +.|.++.+ +-..|.+..||+++++|+.||+ +|++.|+++|+++++||.+.+++++ ||||+++|.+. +.+..
T Consensus 1 Gf~~-~ld~~g~~~~~~~k~~~~q~R~~~~fa~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~-~~~~~ 77 (346)
T PF07221_consen 1 GFFE-CLDRDGKPDDSDKKRLWVQARQLYTFARAYR-LGRPEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGG-PLDPQ 77 (346)
T ss_dssp SBE--EBBTTS-BECGGEEEHHHHHHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTE-EEE--
T ss_pred Ccee-eeCCCCCCCCCCCceeeeeHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCC-CCccc
Confidence 6776 48888875 5566799999999999999999 8999999999999999999999887 99999998777 77788
Q ss_pred ccccCCceEEechHHHHHHhhhh--HHHHHHHhcc-------cCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcC
Q 003940 438 TRKKEGAFYVWTSKEVEDILGEH--AILFKEHYYL-------KPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLG 508 (784)
Q Consensus 438 ~~~~EGayY~Wt~~Ei~~~Lg~~--~~l~~~~f~l-------~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g 508 (784)
+..+..+|.++..++ ..++++. .+++.+.+.+ .+.|-+......|+......+.++|+.+.. ...+.
T Consensus 78 ~~~Y~~af~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~r~~n~~mhl~eA~---l~l~~ 153 (346)
T PF07221_consen 78 KDLYDQAFALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPPRGQNPHMHLLEAF---LALYE 153 (346)
T ss_dssp EEHHHHHHHHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCBEEHHHHHHHHHHH---HHHHH
T ss_pred cchHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccCCCCChhHHHHHHH---HHHHH
Confidence 888999999999999 6677632 3444444433 222221111111111110112234544432 22222
Q ss_pred CCH-HHHHHHH----HHHHHHHHhhhcCCCCCCCCc--hh---------------hhchHHHHHHHHHHHHHHhhhhhhh
Q 003940 509 MPL-EKYLNIL----GECRRKLFDVRSKRPRPHLDD--KV---------------IVSWNGLVISSFARASKILKSEAES 566 (784)
Q Consensus 509 ~~~-~~l~~~l----~~~r~kL~~~R~~R~~P~lDd--Ki---------------itsWNal~I~ALa~a~~~~~d~~~~ 566 (784)
++. +...+.+ +.+.+++.+....+.+-++|+ +. --.-+-=.+|.|.++....+..
T Consensus 154 ~~~~~~~~~~a~~l~~~~~~~f~~~~~g~~~E~f~~dw~~~~~~~~~d~~~~~~~~pGH~~E~~wll~~~~~~~~~~--- 230 (346)
T PF07221_consen 154 ATGDPRYLDRAEELLDLFLDRFADPESGALPEFFDRDWNPLPDGSGDDTFRGRIVEPGHDFEWAWLLLEAARLTGRG--- 230 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHCCTTEETSEEETTSEBETTTTTTHSTTTSSB-HHHHHHHHHHHHHHHHHCHCT---
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHhccCeeeeeeccccccccccccccccccCccCCchhHHHHHHHHHHHHhcccc---
Confidence 222 3333333 333444444333323333333 11 1112222367788877444331
Q ss_pred hcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCC-CCCCCcchHHHHHHHHHHHHHHcCCHHHHHH
Q 003940 567 AMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPS-KAPGFLDDYAFLISGLLDLYEFGSGTKWLVW 644 (784)
Q Consensus 567 ~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~-~~~~~leDyA~li~aLL~LYeaTgd~~yL~~ 644 (784)
.+++++.|.+++++..++-||+++|+++.. ..+|.+ ...+.++.++.++.|++.+|+.||++.|++.
T Consensus 231 -----------~~~~~~~a~~l~~~~~~~G~d~~~gG~~~~~d~~g~~~~~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~ 299 (346)
T PF07221_consen 231 -----------DPDWLERARRLFDFALEHGWDREGGGLFYSVDRDGKPPDRSKRWWPQAEALKALLAAYELTGDEKYLDW 299 (346)
T ss_dssp ------------HTHHHHHHHHHHHHHHHHBSTTTSSB-SEEETTS-BSST-EEHHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred -----------cHHHHHHHHHHHHHHHHheEecCCCeEEEEEeCCCCccccCccccHHHHHHHHHHHHHhccCcHHHHHH
Confidence 278999999999999999999988877766 456655 4568899999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCCCcccccCCCCCcccc
Q 003940 645 AIELQNTQDELFLDREGGGYFNTTGEDPSVLL 676 (784)
Q Consensus 645 A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~ 676 (784)
+.++.+.+.++|.|++.|+||+.-+.+..+..
T Consensus 300 ~~~~~~~~~~~~~d~~~G~W~~~l~~dg~~~~ 331 (346)
T PF07221_consen 300 ARRVWDYIFRHFIDPEYGEWFDYLDRDGSPLE 331 (346)
T ss_dssp HHHHHHHHHHHTB-TTTSSB-SEE-TTS-BSC
T ss_pred HHHHHHHHHHhCCCCCCCeeEeeECCCCCCCC
Confidence 99999999999999999999987766655443
No 10
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.72 E-value=1.2e-17 Score=155.30 Aligned_cols=105 Identities=15% Similarity=0.211 Sum_probs=89.2
Q ss_pred chHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003940 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 126 ~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P 205 (784)
.+++|+++||+++|||||+|+++||++|+.|++++|+|++|.++||++||.+++|.++ |+.. .+... .+..|+|
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~~-~~~~~----~~~~~~P 78 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEGQ-RFLQS----YKVDKYP 78 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccHH-HHHHH----hCccCCC
Confidence 4599999999999999999999999999999999999999999999999999999985 4433 23222 2788999
Q ss_pred cEEEECC-CCceecc-ccccCCCCCCCcchHHHHHHHHH
Q 003940 206 LSVFLSP-DLKPLMG-GTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 206 ~~vfl~p-dg~pi~~-~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
+.+|++| +|+++.. .+|.+++ .|++.|+++.
T Consensus 79 ~~~~i~~~~g~~l~~~~G~~~~~------~f~~~L~~~~ 111 (114)
T cd02958 79 HIAIIDPRTGEVLKVWSGNITPE------DLLSQLIEFL 111 (114)
T ss_pred eEEEEeCccCcEeEEEcCCCCHH------HHHHHHHHHH
Confidence 9999999 8999876 4677766 6777777654
No 11
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.71 E-value=2.2e-17 Score=155.07 Aligned_cols=112 Identities=20% Similarity=0.351 Sum_probs=86.3
Q ss_pred CCcccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHh
Q 003940 119 NPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQAL 198 (784)
Q Consensus 119 ~~v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~ 198 (784)
+.|.|++| ++|+++|++++|||||+|+++||+||+.|+...++.+++.+ ++.+||.|.||.++.+ ..+.|
T Consensus 1 ~~i~w~~~-~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~-~~~~~------- 70 (117)
T cd02959 1 DHIHWVTL-EDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEP-KDEEF------- 70 (117)
T ss_pred CcccceeH-HHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCc-hhhhc-------
Confidence 46899986 99999999999999999999999999999998888788766 6779999999876443 33344
Q ss_pred cCCC--CCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHH
Q 003940 199 YGGG--GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (784)
Q Consensus 199 ~g~~--G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (784)
+.. ++|+++|++|+|+++...+ ...+.....+|.+.|+.|-+
T Consensus 71 -~~~g~~vPt~~f~~~~Gk~~~~~~--~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 71 -SPDGGYIPRILFLDPSGDVHPEII--NKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred -ccCCCccceEEEECCCCCCchhhc--cCCCCccccccCCCHHHHHh
Confidence 333 4999999999999976421 11122234578888877654
No 12
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=4.8e-15 Score=161.72 Aligned_cols=307 Identities=16% Similarity=0.107 Sum_probs=235.2
Q ss_pred HHcCCCcccCCCeEEEEecCCCCCCCC-CchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeec
Q 003940 348 MAKGGIHDHVGGGFHRYSVDERWHVPH-FEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSA 426 (784)
Q Consensus 348 m~~GGi~D~v~GGF~RYsvD~~W~vPH-FEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfysa 426 (784)
|-..--.|..+||||. ..|.+-.+-. -.|-+..+++++++|+.|+.....+.++++|.+.+.|+.+.-++++||+|.+
T Consensus 23 ~w~~~g~d~~~GGffe-~l~~dG~~~~~~~rr~~~~~Rqvy~fA~A~~~g~~~~~~~~v~hG~~y~~~~~R~~~gg~~~~ 101 (388)
T COG2942 23 FWLNAGVDTEGGGFFE-ALDRDGQILDETDRRLRVQARQVYCFAVAGLLGWRGPWLDAVAHGIAYLARVGRDPEGGWYFA 101 (388)
T ss_pred hhcccCcCCCCCCcee-eeccCCccccCCCceeeeehhHHHHHHHHHHhcCCccHHHHHHhHHHHHHhcCcCCCCCeEEE
Confidence 4455566788999998 4444444433 6788888999999999999999888899999999999999999999999999
Q ss_pred ccCCCccccccccccCCceEEechHHHHHHhhhhH--------HHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccC
Q 003940 427 EDADSAETEGATRKKEGAFYVWTSKEVEDILGEHA--------ILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELN 498 (784)
Q Consensus 427 ~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~--------~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~ 498 (784)
+|.|..+.+..++.+..+|-+...+.+..+.++++ ++..++|-=.+.+-.-...+.+|..+...+.+.|+.+
T Consensus 102 ~~~dg~~~Dat~d~Y~haFallA~A~~a~a~~~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~pl~sNp~MHl~E 181 (388)
T COG2942 102 LDNDGGPVDATKDLYGHAFALLAAAHAATAGPPRADELLDEALDVLERRFWREEHPLGGFEEDNPGSAPLGSNPHMHLLE 181 (388)
T ss_pred ecCCCCcccccHhHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCccCCCcchHHHH
Confidence 99999999999999999999999999888887543 2222222111111110112344544556677888876
Q ss_pred CchHHHHhcCC-CH-HHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHH---------------HHHHHHHHHHhh
Q 003940 499 DSSASASKLGM-PL-EKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV---------------ISSFARASKILK 561 (784)
Q Consensus 499 ~~~~~a~~~g~-~~-~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~---------------I~ALa~a~~~~~ 561 (784)
..-...+..|- .. +.+.++.+.++.+..+.++-+.+=++|.. ||.-- .+.|.+.++..+
T Consensus 182 A~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~d----W~p~~~frg~~~ePGH~fEW~~Lll~~a~~~~ 257 (388)
T COG2942 182 AMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHD----WNPAHGFRGRGIEPGHQFEWAWLLLDIARRRG 257 (388)
T ss_pred HHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhcccc----CCcCCCcccCCCCCchHHHHHHHHHHHHHHhc
Confidence 53222222222 11 34445667778899999998888888887 75433 456777777766
Q ss_pred hhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCC-CCCCCcchHHHHHHHHHHHHHHcC-C
Q 003940 562 SEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPS-KAPGFLDDYAFLISGLLDLYEFGS-G 638 (784)
Q Consensus 562 d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~-~~~~~leDyA~li~aLL~LYeaTg-d 638 (784)
+ ...+..|+++.+-..++-||++.|+++-+ +.||.+ +..+..++++..+.+++.|++.|| +
T Consensus 258 ~----------------~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~~~r~WpQ~E~l~AA~ala~~~~~~ 321 (388)
T COG2942 258 R----------------AWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDRQQRLWPQTEALKAAVALAETTGAR 321 (388)
T ss_pred h----------------hHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCHHHhhChHHHHHHHHHHHHhcCCch
Confidence 5 67899999999999999999999998877 467766 456889999999999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccc
Q 003940 639 TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVL 675 (784)
Q Consensus 639 ~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~ 675 (784)
+.|.++..++++.+..+|.|++.|.||+--.++..++
T Consensus 322 ~~y~~~~~R~~~~~~~hl~d~~~G~W~~~l~~dg~~~ 358 (388)
T COG2942 322 ERYWQWYARAWDYLWWHLDDPEYGLWFDKLDEDGEVL 358 (388)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCcchhhcCCCCcee
Confidence 9999999999999999999999999998665555444
No 13
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.63 E-value=1e-15 Score=144.20 Aligned_cols=109 Identities=23% Similarity=0.419 Sum_probs=85.5
Q ss_pred hHHHHHHHhhcC-CcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHH------HHHHHHhc
Q 003940 127 GEEAFAEARKRD-VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY------MTYVQALY 199 (784)
Q Consensus 127 ~~eal~~Ak~e~-KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y------~~~~q~~~ 199 (784)
+.+++++|++++ |||+|.|+++||++|++|+.++++++++.+.++++|+.++||+++.+.+.. | ...+...+
T Consensus 2 ~~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~-~~~~~~~~~~l~~~~ 80 (125)
T cd02951 2 LYEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTD-FDGEALSEKELARKY 80 (125)
T ss_pred hHHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeec-cCCCCccHHHHHHHc
Confidence 468999999999 999999999999999999999999999999998899999999986532110 0 00111123
Q ss_pred CCCCCCcEEEECCC-Cceecc-ccccCCCCCCCcchHHHHHHHHH
Q 003940 200 GGGGWPLSVFLSPD-LKPLMG-GTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 200 g~~G~P~~vfl~pd-g~pi~~-~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
++.++|+++|++++ |+++.. .+|.+++ .|.++|+.+.
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~------~~~~~l~~~~ 119 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYLPPD------EFLAYLEYVQ 119 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCCCHH------HHHHHHHHHH
Confidence 78899999999999 888765 3455543 6888888764
No 14
>smart00594 UAS UAS domain.
Probab=99.57 E-value=6.1e-15 Score=139.31 Aligned_cols=89 Identities=18% Similarity=0.251 Sum_probs=77.4
Q ss_pred CcccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhc
Q 003940 120 PVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY 199 (784)
Q Consensus 120 ~v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~ 199 (784)
|.-+...+++|+++|++++|++||+|+++||.+|++|++++|.|++|.++||++||.+++|.+.... . .+++ ..
T Consensus 9 ~~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg-~-~l~~----~~ 82 (122)
T smart00594 9 PLFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG-Q-RVSQ----FY 82 (122)
T ss_pred CceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH-H-HHHH----hc
Confidence 5667777899999999999999999999999999999999999999999999999999999985432 1 1221 13
Q ss_pred CCCCCCcEEEECCCC
Q 003940 200 GGGGWPLSVFLSPDL 214 (784)
Q Consensus 200 g~~G~P~~vfl~pdg 214 (784)
++.|+|+.+|++|+|
T Consensus 83 ~~~~~P~~~~l~~~~ 97 (122)
T smart00594 83 KLDSFPYVAIVDPRT 97 (122)
T ss_pred CcCCCCEEEEEecCC
Confidence 788999999999997
No 15
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.54 E-value=1.5e-14 Score=131.86 Aligned_cols=95 Identities=22% Similarity=0.329 Sum_probs=78.0
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
++++++|.++||||+|.|+++||++|+.|....++++++++.++++++.++||+++.++....++. . +++.++|++
T Consensus 1 ~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~---~-~~i~~~Pti 76 (104)
T cd02953 1 EAALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLK---R-FGVFGPPTY 76 (104)
T ss_pred CHHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHH---H-cCCCCCCEE
Confidence 367899999999999999999999999999888899999999988999999999875443333322 2 288999999
Q ss_pred EEECC-CCceecc-ccccCCC
Q 003940 208 VFLSP-DLKPLMG-GTYFPPE 226 (784)
Q Consensus 208 vfl~p-dg~pi~~-~tY~p~~ 226 (784)
+|+++ +|+++.. .+|++.+
T Consensus 77 ~~~~~~~g~~~~~~~G~~~~~ 97 (104)
T cd02953 77 LFYGPGGEPEPLRLPGFLTAD 97 (104)
T ss_pred EEECCCCCCCCcccccccCHH
Confidence 99999 8987765 3566643
No 16
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=7.3e-13 Score=153.00 Aligned_cols=158 Identities=15% Similarity=0.140 Sum_probs=131.8
Q ss_pred CchhHHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeecccCCCccccccccccCCceEEechHHH
Q 003940 375 FEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEV 453 (784)
Q Consensus 375 FEKMLyD-NA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei 453 (784)
-+|+|.| |++||.+++.|+++++++.|.++|+++.+|+.++|+.. .+.+.-
T Consensus 405 Ddkvlt~wNglmi~aLa~a~~~~~d~~~l~~A~~~~~fi~~~l~~~--rl~~~~-------------------------- 456 (667)
T COG1331 405 DDKVLTDWNGLMIAALAEAGRVLGDPEYLEAAERAADFILDNLYVD--RLLRRY-------------------------- 456 (667)
T ss_pred CcceeeccHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhccc--chheee--------------------------
Confidence 4588888 99999999999999999999999999999999999864 454410
Q ss_pred HHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCC
Q 003940 454 EDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRP 533 (784)
Q Consensus 454 ~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~ 533 (784)
+.|.. -.
T Consensus 457 ----------------------------------~~G~a---------------------------------------~~ 463 (667)
T COG1331 457 ----------------------------------RGGEA---------------------------------------AV 463 (667)
T ss_pred ----------------------------------ecCcc---------------------------------------cc
Confidence 01110 02
Q ss_pred CCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC-
Q 003940 534 RPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP- 612 (784)
Q Consensus 534 ~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~- 612 (784)
.+.++|+ |++|+||..+|+++++ .+||+.|+++++-+.++|||++ ||||.+..+++
T Consensus 464 ~g~leDY------A~~i~gll~lye~t~d----------------~~yL~~A~~L~~~~i~~f~d~~-gGf~~t~~~~~~ 520 (667)
T COG1331 464 AGLLEDY------AFLILGLLALYEATGD----------------LAYLEKAIELADEAIADFWDDE-GGFYDTPSDSED 520 (667)
T ss_pred cccchhH------HHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHHhcCCC-CCcccCCCcccc
Confidence 3456788 9999999999999998 7999999999999999999987 67887644432
Q ss_pred -------CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 003940 613 -------SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 656 (784)
Q Consensus 613 -------~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F 656 (784)
....+++++||.+|.+|+.|..+|||.+|++.|.++++.+....
T Consensus 521 l~ir~~~~~D~a~~S~na~~~~~L~~Ls~ltg~~~y~e~A~~~L~a~~~~~ 571 (667)
T COG1331 521 LLIRPKEPTDGATPSGNAVAAQALLRLSLLTGDARYLEAAEDILQAFAGLA 571 (667)
T ss_pred cccCCCCCCCCCCCCHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Confidence 23458889999999999999999999999999999998876655
No 17
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=99.50 E-value=2e-12 Score=144.24 Aligned_cols=290 Identities=20% Similarity=0.249 Sum_probs=183.2
Q ss_pred HHHHHHHHhhcccc-CCCCCC---CC--CCCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCC
Q 003940 286 RLCAEQLSKSYDSR-FGGFGS---AP--KFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGG 359 (784)
Q Consensus 286 ~~~~~~l~~~~D~~-~GGfg~---aP--KFP~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~G 359 (784)
..++..+.+.|+.. .|++.+ .| ..|++..+..|..++.+++ +....+++..++..+.... +|.
T Consensus 7 ~~~~~~l~~~y~~~~~g~~~g~~~~~~~~W~~a~~~~~~~d~~~~t~-------d~~y~~~~~~~~~~~~~~~-~~~--- 75 (370)
T PF03663_consen 7 KSAADALQKYYNGNASGNIPGLFPSPYYWWWQAVMLSALIDYYRRTG-------DPTYNDLIQNALLNQRGPN-YDS--- 75 (370)
T ss_dssp -HHHHHHHHHHB-SSTTT-B-SEES--H-HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHT-TSS---
T ss_pred HHHHHHHHHHhCCCCCCCCCCCCCCCCCcChHHHHHHHHHHHHHHhC-------cchHHHHHHHHHHHHhccc-ccc---
Confidence 34455666778887 454322 12 4566778888888887754 3688899999999887644 110
Q ss_pred eEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCCh-----HHHHHHHHHHHHHHHhccCCC---CceeecccC-C
Q 003940 360 GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDV-----FYSYICRDILDYLRRDMIGPG---GEIFSAEDA-D 430 (784)
Q Consensus 360 GF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~-----~y~~~A~~t~~fl~~~m~~~~---Ggfysa~DA-D 430 (784)
|.. ..| ....-.-|||.+..++.+||++++++ .|++.|+++.+++.+ -++++ ||++|..+. +
T Consensus 76 -~~~----~~~---~~~~~~DD~aw~~la~l~aye~t~~~~~~~~~yL~~A~~i~~~~~~-~wd~~~cgGGi~W~~~~~~ 146 (370)
T PF03663_consen 76 -YNP----SNG---SGDRYYDDNAWWALALLRAYELTGDQPSDNPKYLDLAKEIFDFLIS-GWDDTSCGGGIWWSIDDTN 146 (370)
T ss_dssp -S------S---------BHHHHHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHH-TB-SGG-GS-BEEET----
T ss_pred -ccc----ccc---cccCccChHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHH-hcCCccCCCCccccccccC
Confidence 111 000 01123346999999999999999999 999999999999995 55553 889885321 0
Q ss_pred CccccccccccCCceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCC
Q 003940 431 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 510 (784)
Q Consensus 431 S~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~ 510 (784)
. + ...||
T Consensus 147 ~------------------------------------------~-------------~~~Kn------------------ 153 (370)
T PF03663_consen 147 S------------------------------------------G-------------YDYKN------------------ 153 (370)
T ss_dssp T------------------------------------------E-------------EEEEE------------------
T ss_pred C------------------------------------------C-------------CCccc------------------
Confidence 0 0 01121
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 003940 511 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 590 (784)
Q Consensus 511 ~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~ 590 (784)
+--|++++.+.+++|+++++ +.|++.|+++.+
T Consensus 154 --------------------------------a~sN~~~~~laarL~~~t~~----------------~~Yl~~A~~~~~ 185 (370)
T PF03663_consen 154 --------------------------------AISNGPAAQLAARLYRITGD----------------QTYLDWAKKIYD 185 (370)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHH
T ss_pred --------------------------------ccchHHHHHHHHHHHHhcCC----------------hHHHHHHHHHHH
Confidence 12489999999999999988 789999999999
Q ss_pred HHHH-hccccCCCeEEEEec-CC---CCCCCCCcchHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHhccccCCCcc
Q 003940 591 FIRR-HLYDEQTHRLQHSFR-NG---PSKAPGFLDDYAFLISGLLDLYEFGSGT-KWLVWAIELQNTQDELFLDREGGGY 664 (784)
Q Consensus 591 ~l~~-~l~d~~~G~l~~~~~-dg---~~~~~~~leDyA~li~aLL~LYeaTgd~-~yL~~A~~L~~~~~~~F~D~~~Ggy 664 (784)
|+.+ .|.|+++|.++.... ++ ......+.+.++.+|.|++.||++|+++ .||+.|++|.+....+|+++.+|-.
T Consensus 186 W~~~~~L~d~~~g~v~Dg~~~~~~c~~~~~~~~TYNqG~~l~a~~~Ly~~T~~~~~yl~~A~~la~~~~~~~~~~~~gil 265 (370)
T PF03663_consen 186 WMRDSGLIDPSTGLVYDGINIDGNCTNINKTKWTYNQGVFLGAAAYLYNATNDEQTYLDRAEKLADAAINHFFDNGDGIL 265 (370)
T ss_dssp HHHH-HHB--TTS-B--EE-TTSSS-B-TT---HHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHEETT--EE
T ss_pred HhhcceeEECCCcEEEeCCccCCCCCcCCCceechHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHhCCCCCeee
Confidence 9999 999988787776542 22 2345688899999999999999999887 9999999999999999887655545
Q ss_pred cccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 003940 665 FNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFE 724 (784)
Q Consensus 665 f~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~ 724 (784)
++..-+. ....++-.+.-++++++.|..|+.+.... .+.|.+..+.-.++..
T Consensus 266 ~e~~ce~-------~~~~~~d~~~Fkgi~~r~L~~l~~~~~~~-~~~~~~~l~~~a~~a~ 317 (370)
T PF03663_consen 266 TEEACEP-------SGTCDGDQPLFKGIFARYLADLAQVAPDT-ADTYRDFLRKNADAAW 317 (370)
T ss_dssp -----------------SSSGGGGHHHHHHHHHHHHHHHHT----HHHHHHHHHHHHHHH
T ss_pred ecccccc-------CcCcCCccHHHHHHHHHHHHHHHHHCcch-HHHHHHHHHHHHHHHH
Confidence 5431110 11134556788899999999999998531 2455555544444443
No 18
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.46 E-value=2e-13 Score=160.03 Aligned_cols=113 Identities=20% Similarity=0.328 Sum_probs=89.4
Q ss_pred CCcccccch-----HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHH
Q 003940 119 NPVDWFAWG-----EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT 193 (784)
Q Consensus 119 ~~v~W~~~~-----~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~ 193 (784)
+.+.|++.. ++++++|+++||||+|+|+++||++|++|++.+|+|++|++.++ +|+.+++|.+++.+-.+.+++
T Consensus 450 ~~~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~~~~l~~ 528 (571)
T PRK00293 450 AHLNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAEDVALLK 528 (571)
T ss_pred cCCCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChhhHHHHH
Confidence 445676653 78999999999999999999999999999999999999999996 699999999875433333322
Q ss_pred HHHHhcCCCCCCcEEEECCCCceec--c-ccccCCCCCCCcchHHHHHHHHH
Q 003940 194 YVQALYGGGGWPLSVFLSPDLKPLM--G-GTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 194 ~~q~~~g~~G~P~~vfl~pdg~pi~--~-~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
. .++.|+|+++|++++|+++. . .++++++ .|.+.|+++.
T Consensus 529 ~----~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~------~f~~~L~~~~ 570 (571)
T PRK00293 529 H----YNVLGLPTILFFDAQGQEIPDARVTGFMDAA------AFAAHLRQLQ 570 (571)
T ss_pred H----cCCCCCCEEEEECCCCCCcccccccCCCCHH------HHHHHHHHhc
Confidence 2 38899999999999999863 2 3455544 6888777653
No 19
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=99.46 E-value=1.8e-13 Score=150.72 Aligned_cols=163 Identities=26% Similarity=0.314 Sum_probs=133.2
Q ss_pred CCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC
Q 003940 534 RPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS 613 (784)
Q Consensus 534 ~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~ 613 (784)
.|..+++.-+-.++.+|+.++.|+. +|+ ++|++.|++.++||.++++|+++|+++++.++|.+
T Consensus 11 ~~~~~~~k~~~~q~R~~~~fa~a~~-~g~----------------~~~l~~A~~~~~fl~~~~~D~~~Gg~~~~~~~~~~ 73 (346)
T PF07221_consen 11 KPDDSDKKRLWVQARQLYTFARAYR-LGR----------------PEYLELAEHGFDFLRKHFRDPEYGGWYRSLDDGGP 73 (346)
T ss_dssp -BECGGEEEHHHHHHHHHHHHHHHH-TTS----------------HHHHHHHHHHHHHHHHTTBTTTTSSBSSEEETTEE
T ss_pred CCCCCCCceeeeeHHHHHHHHHHHh-cCc----------------hhHHHHHHHHHHHHHHhcccCCCCCEEEEeCCCCC
Confidence 3555566677789999999999999 886 78999999999999999999988999888765543
Q ss_pred -CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhH-
Q 003940 614 -KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS- 691 (784)
Q Consensus 614 -~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns- 691 (784)
....-++|+||++.|+.. +.+||++++++.|+++++.+.++|+|++.|+|+.....+...+ ++.|+
T Consensus 74 ~~~~~~~Y~~af~l~ala~-~~~tg~~~~~~~A~~~~~~l~~~~~d~~~g~~~~~~~~~~~~~-----------r~~n~~ 141 (346)
T PF07221_consen 74 LDPQKDLYDQAFALLALAE-ARATGDPEALELAEQTLEFLERRFWDPEGGGYRESFDPDWSPP-----------RGQNPH 141 (346)
T ss_dssp EE--EEHHHHHHHHHHHHH-HHCTT-TTHHHHHHHHHHHHHHHTEETTTTEE--EETTTSSCB-----------EEHHHH
T ss_pred CccccchHHHHHHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcccccCcceeccCCccccC-----------CCCChh
Confidence 345678899999999999 8999999999999999999999999998888887654332221 35666
Q ss_pred -HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 003940 692 -VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLK 728 (784)
Q Consensus 692 -v~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~ 728 (784)
+++++++.|++++++ +.|+++|+++++.+...+.
T Consensus 142 mhl~eA~l~l~~~~~~---~~~~~~a~~l~~~~~~~f~ 176 (346)
T PF07221_consen 142 MHLLEAFLALYEATGD---PRYLDRAEELLDLFLDRFA 176 (346)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhccC---HHHHHHHHHHHHHHHHHHH
Confidence 689999999999995 8899999999999986554
No 20
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.39 E-value=6.6e-13 Score=151.35 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=88.3
Q ss_pred CcccccchHH-HHHHHhhcCC--cEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHH
Q 003940 120 PVDWFAWGEE-AFAEARKRDV--PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQ 196 (784)
Q Consensus 120 ~v~W~~~~~e-al~~Ak~e~K--pI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q 196 (784)
...|+++.++ .++++.+|+| ||||+||||||..||+||+.+|+|++|+..+. ++|.+++|++++.+.+...++.
T Consensus 453 ~~~~q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~-~~vlLqaDvT~~~p~~~~lLk~-- 529 (569)
T COG4232 453 GEFWQPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQ-DVVLLQADVTANDPAITALLKR-- 529 (569)
T ss_pred chhhhccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcC-CeEEEEeeecCCCHHHHHHHHH--
Confidence 3567888877 8888888888 99999999999999999999999999999995 8999999999764444444433
Q ss_pred HhcCCCCCCcEEEECCCCceecccc-ccCCCCCCCcchHHHHHHHH
Q 003940 197 ALYGGGGWPLSVFLSPDLKPLMGGT-YFPPEDKYGRPGFKTILRKV 241 (784)
Q Consensus 197 ~~~g~~G~P~~vfl~pdg~pi~~~t-Y~p~~~~~~~~~f~~~L~~i 241 (784)
.|+.|.|+++|++++|++...-+ .+.. ..|++.|++.
T Consensus 530 --~~~~G~P~~~ff~~~g~e~~~l~gf~~a------~~~~~~l~~~ 567 (569)
T COG4232 530 --LGVFGVPTYLFFGPQGSEPEILTGFLTA------DAFLEHLERA 567 (569)
T ss_pred --cCCCCCCEEEEECCCCCcCcCCcceecH------HHHHHHHHHh
Confidence 27889999999999998766532 3332 2566666543
No 21
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.33 E-value=3.3e-13 Score=124.08 Aligned_cols=98 Identities=32% Similarity=0.477 Sum_probs=72.2
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHH-------------HHHHHHHHhcC
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDK-------------VYMTYVQALYG 200 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~-------------~y~~~~q~~~g 200 (784)
||+++||++|.|+.+||++|++|++++++++++...++++|..|.++.++..+... .-.+..+. .|
T Consensus 1 ~~~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~ 79 (112)
T PF13098_consen 1 AKGNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQR-YG 79 (112)
T ss_dssp EETTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHH-TT
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHH-cC
Confidence 68899999999999999999999999999999999998889999999875432111 11123333 48
Q ss_pred CCCCCcEEEECCCCceecc-ccccCCCCCCCcchHHHHH
Q 003940 201 GGGWPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTIL 238 (784)
Q Consensus 201 ~~G~P~~vfl~pdg~pi~~-~tY~p~~~~~~~~~f~~~L 238 (784)
+.|+|+++|+|++|+++.. .||.+++ .|+++|
T Consensus 80 v~gtPt~~~~d~~G~~v~~~~G~~~~~------~l~~~L 112 (112)
T PF13098_consen 80 VNGTPTIVFLDKDGKIVYRIPGYLSPE------ELLKML 112 (112)
T ss_dssp --SSSEEEECTTTSCEEEEEESS--HH------HHHHHH
T ss_pred CCccCEEEEEcCCCCEEEEecCCCCHH------HHHhhC
Confidence 9999999999999998864 4677765 566654
No 22
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=99.23 E-value=3.1e-11 Score=113.43 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=78.9
Q ss_pred chHHHHHHHhhcCCcEEEEEccc----CChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCC
Q 003940 126 WGEEAFAEARKRDVPIFLSIGYS----TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG 201 (784)
Q Consensus 126 ~~~eal~~Ak~e~KpI~l~~~~~----wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~ 201 (784)
-++||++.||++.|++||+++.+ ||.+| +++|.||+|.++||++||.+..|++.. +- + +..+. .+.
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc----~~~l~~~~v~~~ln~~fv~w~~dv~~~-eg---~-~la~~-l~~ 74 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFC----RNTLCAPEVIEYINTRMLFWACSVAKP-EG---Y-RVSQA-LRE 74 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHH----HHHcCCHHHHHHHHcCEEEEEEecCCh-HH---H-HHHHH-hCC
Confidence 35899999999999999999999 66666 789999999999999999999999853 32 1 12222 278
Q ss_pred CCCCcEEEECCC---Cceecc-ccccCCCCCCCcchHHHHHHHHHH
Q 003940 202 GGWPLSVFLSPD---LKPLMG-GTYFPPEDKYGRPGFKTILRKVKD 243 (784)
Q Consensus 202 ~G~P~~vfl~pd---g~pi~~-~tY~p~~~~~~~~~f~~~L~~i~~ 243 (784)
.++|+.+|+.|. .+++.. .+|.+|+ .|+..|..+.+
T Consensus 75 ~~~P~~~~l~~~~~~~~vv~~i~G~~~~~------~ll~~L~~~~~ 114 (116)
T cd02991 75 RTYPFLAMIMLKDNRMTIVGRLEGLIQPE------DLINRLTFIMD 114 (116)
T ss_pred CCCCEEEEEEecCCceEEEEEEeCCCCHH------HHHHHHHHHHh
Confidence 899999999654 344444 3677766 67777776653
No 23
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=1.1e-10 Score=112.45 Aligned_cols=116 Identities=18% Similarity=0.274 Sum_probs=96.7
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCC-ccH--------HHHHHHHHHHh
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-PDV--------DKVYMTYVQAL 198 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~-pdi--------~~~y~~~~q~~ 198 (784)
-++.+.|..++|-+|+.|+...|.+|..|.+.+|++++++++|.+||+.+.+|.+.. |-+ ...+.+.+|.+
T Consensus 32 ~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf 111 (182)
T COG2143 32 FDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKF 111 (182)
T ss_pred HHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHh
Confidence 578889999999999999999999999999999999999999999999999998632 211 11133444444
Q ss_pred cCCCCCCcEEEECCCCceecc-ccccCCCCCCCcchHHHHHHHHHHHHhhchH
Q 003940 199 YGGGGWPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRKVKDAWDKKRD 250 (784)
Q Consensus 199 ~g~~G~P~~vfl~pdg~pi~~-~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~~ 250 (784)
++.|+|++||.|.+|+-|.. -||+||+ .|+.+|+.|++-..++-+
T Consensus 112 -~vrstPtfvFfdk~Gk~Il~lPGY~ppe------~Fl~vlkYVa~g~ykd~~ 157 (182)
T COG2143 112 -AVRSTPTFVFFDKTGKTILELPGYMPPE------QFLAVLKYVADGKYKDTK 157 (182)
T ss_pred -ccccCceEEEEcCCCCEEEecCCCCCHH------HHHHHHHHHHHHHHhhhc
Confidence 89999999999999998876 5899988 799999999887765544
No 24
>PF03663 Glyco_hydro_76: Glycosyl hydrolase family 76 ; InterPro: IPR005198 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of alpha-1,6-mannanases belonging to glycoside hydrolase family 76 (GH76 from CAZY).; PDB: 3K7X_A.
Probab=99.14 E-value=2e-09 Score=120.29 Aligned_cols=166 Identities=14% Similarity=0.146 Sum_probs=106.9
Q ss_pred CCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEEEEecCC-C
Q 003940 536 HLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQHSFRNG-P 612 (784)
Q Consensus 536 ~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~--G~l~~~~~dg-~ 612 (784)
+.||. +..+.|+.+||+++++.+ ...++||+.|+++.+++. ..||++. ||+++.-.+. .
T Consensus 86 ~~DD~------aw~~la~l~aye~t~~~~-----------~~~~~yL~~A~~i~~~~~-~~wd~~~cgGGi~W~~~~~~~ 147 (370)
T PF03663_consen 86 YYDDN------AWWALALLRAYELTGDQP-----------SDNPKYLDLAKEIFDFLI-SGWDDTSCGGGIWWSIDDTNS 147 (370)
T ss_dssp BHHHH------HHHHHHHHHHHHHH--H----------------HHHHHHHHHHHHHH-HTB-SGG-GS-BEEET----T
T ss_pred ccChH------HHHHHHHHHHHHhhCCCc-----------chHHHHHHHHHHHHHHHH-HhcCCccCCCCccccccccCC
Confidence 55776 889999999999999821 001399999999999999 7778763 8888762110 0
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hccccCCCcccccCCCCCccccccccCCCCCCC-Chh
Q 003940 613 SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE-LFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEP-SGN 690 (784)
Q Consensus 613 ~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~-~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~P-S~N 690 (784)
...-+-.--.+-++...++||++|+|+.||++|+++++.+.+ .++|++.|.+++....+..= .. .+...- --.
T Consensus 148 ~~~~Kna~sN~~~~~laarL~~~t~~~~Yl~~A~~~~~W~~~~~L~d~~~g~v~Dg~~~~~~c----~~-~~~~~~TYNq 222 (370)
T PF03663_consen 148 GYDYKNAISNGPAAQLAARLYRITGDQTYLDWAKKIYDWMRDSGLIDPSTGLVYDGINIDGNC----TN-INKTKWTYNQ 222 (370)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH-HHB--TTS-B--EE-TTSSS-----B--TT---HHHH
T ss_pred CCCcccccchHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhcceeEECCCcEEEeCCccCCCC----Cc-CCCceechHH
Confidence 011111224577888999999999999999999999999999 99998888888754211100 00 122222 334
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 003940 691 SVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 726 (784)
Q Consensus 691 sv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~ 726 (784)
++++.++..|++.|+++ ..|+++|++++++....
T Consensus 223 G~~l~a~~~Ly~~T~~~--~~yl~~A~~la~~~~~~ 256 (370)
T PF03663_consen 223 GVFLGAAAYLYNATNDE--QTYLDRAEKLADAAINH 256 (370)
T ss_dssp HHHHHHHHHHHHHH--H---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCc--cHHHHHHHHHHHHHHHH
Confidence 58999999999999751 38999999999988655
No 25
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.09 E-value=2.1e-10 Score=111.37 Aligned_cols=85 Identities=20% Similarity=0.213 Sum_probs=61.5
Q ss_pred HHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcc--cEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW--FVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~--FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
..+++|.+++|||+|.|+++||++|+.|... |+ ++++.++.. ||.|.+|.++.+++.+.| ++.|+|+
T Consensus 11 ~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~-l~--~l~~~~~~~~~~v~v~vd~~~~~~~~~~~--------~V~~iPt 79 (142)
T cd02950 11 TPPEVALSNGKPTLVEFYADWCTVCQEMAPD-VA--KLKQKYGDQVNFVMLNVDNPKWLPEIDRY--------RVDGIPH 79 (142)
T ss_pred CCHHHHHhCCCEEEEEEECCcCHHHHHhHHH-HH--HHHHHhccCeeEEEEEcCCcccHHHHHHc--------CCCCCCE
Confidence 3467778899999999999999999999863 33 455556543 555555544334444433 8899999
Q ss_pred EEEECCCCceeccc-cccC
Q 003940 207 SVFLSPDLKPLMGG-TYFP 224 (784)
Q Consensus 207 ~vfl~pdg~pi~~~-tY~p 224 (784)
++|++++|+++... ++.+
T Consensus 80 ~v~~~~~G~~v~~~~G~~~ 98 (142)
T cd02950 80 FVFLDREGNEEGQSIGLQP 98 (142)
T ss_pred EEEECCCCCEEEEEeCCCC
Confidence 99999999988653 3444
No 26
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=99.08 E-value=7.6e-10 Score=123.48 Aligned_cols=195 Identities=16% Similarity=0.155 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCc-hhHHH-HHHHHHHHHHHHHccCC-hHHHHHHHHHHHH
Q 003940 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFE-KMLYD-QGQLANVYLDAFSLTKD-VFYSYICRDILDY 411 (784)
Q Consensus 335 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFE-KMLyD-NA~Ll~~ya~Ay~~t~d-~~y~~~A~~t~~f 411 (784)
++.++.+..+.+.+.. +++ .=+-||.. ||+.. |+++|..|+.|+++++. |.|.+.|...++|
T Consensus 473 e~~kkll~e~~e~L~~--aR~-------------kRPkPHLDsKii~sWnGLviSgl~kag~~~~a~~~y~~~a~~~a~f 537 (786)
T KOG2244|consen 473 EKYKKLLGECREKLFD--ARL-------------KRPKPHLDSKIIVSWNGLVISGLAKAGKILKAEPEYTKYAFPVANF 537 (786)
T ss_pred HHHHHHHHHHHHHHHH--Hhh-------------cCCCCCccchheeeccchhhHHHHHHHHHhhcCHHHHHHHHHHHhh
Confidence 3555666666666544 322 33579954 99999 99999999999999875 5999999999999
Q ss_pred HHHhccCCC-CceeecccCCCccccccccccCCceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCC
Q 003940 412 LRRDMIGPG-GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKG 490 (784)
Q Consensus 412 l~~~m~~~~-Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g 490 (784)
+.++|.++. +.|....--+ ...|.++ .
T Consensus 538 l~k~m~d~~eklliR~scY~----------------------------------------ga~g~ve------------~ 565 (786)
T KOG2244|consen 538 LPKDMIDVAEKLLIRGSCYD----------------------------------------GASGRVE------------H 565 (786)
T ss_pred hhhhhhchhhhheeeccccc----------------------------------------CCCccee------------c
Confidence 999999876 4333310000 0112211 1
Q ss_pred cceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhccc
Q 003940 491 KNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFN 570 (784)
Q Consensus 491 ~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~ 570 (784)
.| |.-+.+.|+||+ |++|.+|++.|++.++
T Consensus 566 ~n------------------------------------~~~~~~~FldDY------AFlI~gLLDlYea~~~-------- 595 (786)
T KOG2244|consen 566 SN------------------------------------RPSKAPAFLDDY------AFLISGLLDLYEAGGG-------- 595 (786)
T ss_pred cC------------------------------------CccccchhhhhH------HHHHHHHHHHHHccCc--------
Confidence 11 112355699999 9999999999999988
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCC--------CCcchHHHHHHHHHHHHHHcCCHHHH
Q 003940 571 FPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP--------GFLDDYAFLISGLLDLYEFGSGTKWL 642 (784)
Q Consensus 571 ~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~--------~~leDyA~li~aLL~LYeaTgd~~yL 642 (784)
.+||+.|+++.+-..+.||| +|++|.+-.+++.... +-+..++..+.+|+.|+.+++.+.|+
T Consensus 596 --------~e~LkwA~~LQdtqdklFWd--gggYF~Se~~~~~v~vRlkeDhDGAEPs~nSVsahNLvrL~~~~~~e~yl 665 (786)
T KOG2244|consen 596 --------IEWLKWAIKLQDTQDKLFWD--GGGYFISEKTDEDVSVRLKEDHDGAEPSGNSVSAHNLVRLASIVAAESYL 665 (786)
T ss_pred --------hHHHHHHHHHHHHHHHheec--CCceeeeeccCCCcceeeccccCCCCCCccchhhhhHHHHHHHhhHHHHH
Confidence 78999999999999999999 7888877555443222 44455688999999999999999999
Q ss_pred HHHHHHHHHHHHhc
Q 003940 643 VWAIELQNTQDELF 656 (784)
Q Consensus 643 ~~A~~L~~~~~~~F 656 (784)
+.|..|+..+.++.
T Consensus 666 ~ka~~ll~~fseRl 679 (786)
T KOG2244|consen 666 NKAHRLLAVFSERL 679 (786)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887765
No 27
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.01 E-value=1.3e-09 Score=101.96 Aligned_cols=79 Identities=22% Similarity=0.222 Sum_probs=63.4
Q ss_pred HHHHHHhh--cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 129 EAFAEARK--RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 129 eal~~Ak~--e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
+++..+-+ .++||+|+|+++||+.|+.|+. +|+ ++++.+......++||+++.|++.+.| ++.+.||
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P-~le--~la~~~~~~v~f~kVDvD~~~~la~~~--------~V~~iPT 71 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDE-VLA--KIAEDVSNFAVIYLVDIDEVPDFNKMY--------ELYDPPT 71 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHH-HHH--HHHHHccCceEEEEEECCCCHHHHHHc--------CCCCCCE
Confidence 45566654 6899999999999999999985 443 666666544457999999999999887 8999999
Q ss_pred EEEECCCCceecc
Q 003940 207 SVFLSPDLKPLMG 219 (784)
Q Consensus 207 ~vfl~pdg~pi~~ 219 (784)
++|+. +|+.+..
T Consensus 72 f~~fk-~G~~v~~ 83 (114)
T cd02954 72 VMFFF-RNKHMKI 83 (114)
T ss_pred EEEEE-CCEEEEE
Confidence 99985 7887754
No 28
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.93 E-value=2e-09 Score=97.13 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=64.2
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg 214 (784)
.+.+|+|+|.|+++||++|+.|... + .++++.++.++..+++|.++.|++.+.+ ++.++|+++|+. +|
T Consensus 10 ~~~~~~vlv~f~a~~C~~C~~~~~~-l--~~l~~~~~~~v~~~~id~d~~~~l~~~~--------~v~~vPt~~i~~-~g 77 (97)
T cd02949 10 HESDRLILVLYTSPTCGPCRTLKPI-L--NKVIDEFDGAVHFVEIDIDEDQEIAEAA--------GIMGTPTVQFFK-DK 77 (97)
T ss_pred HhCCCeEEEEEECCCChhHHHHHHH-H--HHHHHHhCCceEEEEEECCCCHHHHHHC--------CCeeccEEEEEE-CC
Confidence 4689999999999999999999864 3 5788888878999999999888876655 788999999995 78
Q ss_pred ceeccc-cccC
Q 003940 215 KPLMGG-TYFP 224 (784)
Q Consensus 215 ~pi~~~-tY~p 224 (784)
+.+... ++.+
T Consensus 78 ~~v~~~~g~~~ 88 (97)
T cd02949 78 ELVKEISGVKM 88 (97)
T ss_pred eEEEEEeCCcc
Confidence 887653 3344
No 29
>PRK10996 thioredoxin 2; Provisional
Probab=98.92 E-value=3.3e-09 Score=102.57 Aligned_cols=95 Identities=17% Similarity=0.231 Sum_probs=75.1
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
.+.++.+.+++|+|+|.|+++||+.|+.|.. .|+ ++++.++.++..++||.++.+++.+.| ++.|+|++
T Consensus 42 ~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~-~l~--~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~V~~~Ptl 110 (139)
T PRK10996 42 GETLDKLLQDDLPVVIDFWAPWCGPCRNFAP-IFE--DVAAERSGKVRFVKVNTEAERELSARF--------RIRSIPTI 110 (139)
T ss_pred HHHHHHHHhCCCeEEEEEECCCCHHHHHHHH-HHH--HHHHHhCCCeEEEEEeCCCCHHHHHhc--------CCCccCEE
Confidence 6677778888999999999999999999976 564 577778888999999999988877666 89999999
Q ss_pred EEECCCCceecc-ccccCCCCCCCcchHHHHHHH
Q 003940 208 VFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRK 240 (784)
Q Consensus 208 vfl~pdg~pi~~-~tY~p~~~~~~~~~f~~~L~~ 240 (784)
+|+. +|+++.. .++.+.+ .|.+.|++
T Consensus 111 ii~~-~G~~v~~~~G~~~~e------~l~~~l~~ 137 (139)
T PRK10996 111 MIFK-NGQVVDMLNGAVPKA------PFDSWLNE 137 (139)
T ss_pred EEEE-CCEEEEEEcCCCCHH------HHHHHHHH
Confidence 9885 8998764 2344432 45555553
No 30
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=4.8e-09 Score=101.61 Aligned_cols=96 Identities=18% Similarity=0.198 Sum_probs=74.7
Q ss_pred CCCcccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHH
Q 003940 118 HNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQA 197 (784)
Q Consensus 118 ~~~v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~ 197 (784)
..-++|++. ++=-++-.+.++||+|+|+|.||..|+.|.... .++..-+...|-..|||.++.+++...|
T Consensus 42 ~~~~~~~s~-~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l---~~~~~~~~g~~k~~kvdtD~~~ela~~Y------ 111 (150)
T KOG0910|consen 42 ATLFNVQSD-SEFDDKVINSDVPVLVDFHAEWCGPCKMLGPIL---EELVSEYAGKFKLYKVDTDEHPELAEDY------ 111 (150)
T ss_pred cccccccCH-HHHHHHHHccCCCEEEEEecCcCccHhHhhHHH---HHHHHhhcCeEEEEEEccccccchHhhc------
Confidence 456888876 677777789999999999999999999997521 2333333346999999999999999888
Q ss_pred hcCCCCCCcEEEECCCCceecc-ccccCCC
Q 003940 198 LYGGGGWPLSVFLSPDLKPLMG-GTYFPPE 226 (784)
Q Consensus 198 ~~g~~G~P~~vfl~pdg~pi~~-~tY~p~~ 226 (784)
++...||.+++ .+|+..-. .|+.|++
T Consensus 112 --~I~avPtvlvf-knGe~~d~~vG~~~~~ 138 (150)
T KOG0910|consen 112 --EISAVPTVLVF-KNGEKVDRFVGAVPKE 138 (150)
T ss_pred --ceeeeeEEEEE-ECCEEeeeecccCCHH
Confidence 88999999988 56777743 4566754
No 31
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.91 E-value=4.2e-08 Score=106.48 Aligned_cols=159 Identities=15% Similarity=0.125 Sum_probs=124.6
Q ss_pred hhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCc
Q 003940 540 KVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFL 619 (784)
Q Consensus 540 KiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~l 619 (784)
-++....| ++.+|...++. ++ ++|++.|+++++++.+...+.+. .+.+.++.....++.
T Consensus 80 dl~~G~aG-~~~~ll~l~~~-~~----------------~~~l~~a~~~~~~l~~~~~~~~~---~~~~~~~~~~~~G~~ 138 (321)
T cd04791 80 DLASGLAG-IGLALLYFART-GD----------------PALLEAAAKIAELLAEALERGDP---ALLWPDFDRVDHGLL 138 (321)
T ss_pred ccccchHH-HHHHHHHHHhc-CC----------------hHHHHHHHHHHHHHHHHhhcccc---ccccccCCCCCCccc
Confidence 45566666 45567778877 76 88999999999999988765322 233444445567999
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHH
Q 003940 620 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR 699 (784)
Q Consensus 620 eDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~r 699 (784)
+++|-.+.+|+.+|++|+|++|++.|+++.+...++|++.+ ++|+++...+. .....++|++-++.+|++
T Consensus 139 hG~aGi~~~L~~l~~~t~d~~~l~~A~~~~~~~~~~~~~~~-~g~~~~~~~~~---------~~~~wchG~aGi~~~l~~ 208 (321)
T cd04791 139 HGWAGIALFLLRLYKATGDSRYLELAEEALDKELARAVVDD-GGLLQVDEGAR---------LLPYLCSGSAGLGLLMLR 208 (321)
T ss_pred cCcHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhccCC-CCceEcCCCCc---------cCcccCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999997654 55665432211 123679999999999999
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHHHHHHHHhhh
Q 003940 700 LASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 732 (784)
Q Consensus 700 L~~lt~~~~~~~y~e~A~~~l~~~~~~l~~~p~ 732 (784)
|++++++ ++|++.|+++++.+......+|.
T Consensus 209 l~~~~~d---~~~~~~a~~~~~~~~~~~~~~~~ 238 (321)
T cd04791 209 LEAITGD---KRWRDEADGIAHAALSSCYANPG 238 (321)
T ss_pred HHHhcCC---HHHHHHHHHHHHHHhhhhccCcc
Confidence 9999875 78999999999998877656664
No 32
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=98.91 E-value=4.3e-09 Score=102.10 Aligned_cols=75 Identities=20% Similarity=0.225 Sum_probs=59.9
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~ 215 (784)
+++|||+|+|+++||+.|+.|+. +| +++++.+.+....+|||+++.|++.+.| ++.+.|+++|+-.+|+
T Consensus 21 ~~~~lVVvdF~A~WCgpCk~m~p-~l--~~la~~~~~~~~~~kVDVDe~~dla~~y--------~I~~~~t~~~ffk~g~ 89 (142)
T PLN00410 21 EEERLVVIRFGHDWDETCMQMDE-VL--ASVAETIKNFAVIYLVDITEVPDFNTMY--------ELYDPCTVMFFFRNKH 89 (142)
T ss_pred cCCCEEEEEEECCCChhHHHHHH-HH--HHHHHHcCCceEEEEEECCCCHHHHHHc--------CccCCCcEEEEEECCe
Confidence 37999999999999999999985 44 4678777544455999999999999887 7788888886667887
Q ss_pred -eecccc
Q 003940 216 -PLMGGT 221 (784)
Q Consensus 216 -pi~~~t 221 (784)
.+..++
T Consensus 90 ~~vd~~t 96 (142)
T PLN00410 90 IMIDLGT 96 (142)
T ss_pred EEEEEec
Confidence 555543
No 33
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.89 E-value=3.7e-09 Score=94.56 Aligned_cols=72 Identities=18% Similarity=0.287 Sum_probs=60.4
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~ 215 (784)
..+|||+|.|+++||+.|+.|... + .++++.++..+..++||.++.+++.+.| ++.++|+++|++ +|+
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~~~-~--~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~i~~~Pt~~~~~-~g~ 77 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELLPL-L--ERLAEEYQGQFVLAKVNCDAQPQIAQQF--------GVQALPTVYLFA-AGQ 77 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHhCCcEEEEEEeccCCHHHHHHc--------CCCCCCEEEEEe-CCE
Confidence 458999999999999999999763 3 4777777767889999999988877665 889999999997 888
Q ss_pred eecc
Q 003940 216 PLMG 219 (784)
Q Consensus 216 pi~~ 219 (784)
++..
T Consensus 78 ~~~~ 81 (96)
T cd02956 78 PVDG 81 (96)
T ss_pred Eeee
Confidence 7643
No 34
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.83 E-value=1e-08 Score=93.58 Aligned_cols=80 Identities=16% Similarity=0.163 Sum_probs=62.1
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
.+.++.+.++++||+|+|+++||+.|+.|.. .| .++++.+.. ....+++|.+ .+++.+.| ++.+.|+
T Consensus 7 ~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p-~l--~~~~~~~~~~~~~~~~vd~d-~~~~~~~~--------~v~~~Pt 74 (102)
T cd02948 7 QEEWEELLSNKGLTVVDVYQEWCGPCKAVVS-LF--KKIKNELGDDLLHFATAEAD-TIDTLKRY--------RGKCEPT 74 (102)
T ss_pred HHHHHHHHccCCeEEEEEECCcCHhHHHHhH-HH--HHHHHHcCCCcEEEEEEeCC-CHHHHHHc--------CCCcCcE
Confidence 6677778888999999999999999999986 45 356666653 3567788888 56665555 8899999
Q ss_pred EEEECCCCceeccc
Q 003940 207 SVFLSPDLKPLMGG 220 (784)
Q Consensus 207 ~vfl~pdg~pi~~~ 220 (784)
++|+ .+|+++...
T Consensus 75 ~~~~-~~g~~~~~~ 87 (102)
T cd02948 75 FLFY-KNGELVAVI 87 (102)
T ss_pred EEEE-ECCEEEEEE
Confidence 8888 588887653
No 35
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.80 E-value=1.3e-08 Score=90.89 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=58.6
Q ss_pred CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi 217 (784)
+|+|+|.|+++||++|+.|.. +|+ ++++.++.++..+++|.++.+++.+.| ++.+.|+++|+. +|+++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~-~l~--~l~~~~~~~i~~~~vd~~~~~~~~~~~--------~i~~~Pt~~~~~-~g~~~ 81 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQ-VFE--ELAKEAFPSVLFLSIEAEELPEISEKF--------EITAVPTFVFFR-NGTIV 81 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhH-HHH--HHHHHhCCceEEEEEccccCHHHHHhc--------CCccccEEEEEE-CCEEE
Confidence 599999999999999999976 553 566666668999999999888877665 889999999995 88887
Q ss_pred cc
Q 003940 218 MG 219 (784)
Q Consensus 218 ~~ 219 (784)
..
T Consensus 82 ~~ 83 (97)
T cd02984 82 DR 83 (97)
T ss_pred EE
Confidence 55
No 36
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=98.79 E-value=4.3e-07 Score=100.00 Aligned_cols=152 Identities=20% Similarity=0.300 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-CCCCCCCC--CcchHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGPSKAPG--FLDDYA 623 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~-dg~~~~~~--~leDyA 623 (784)
.|.+..|+.+++.+|| ++|++.|.+-+....++++|+++|.++|.+. +|...... ..=.++
T Consensus 127 ~M~~p~l~~~~~~tgd----------------~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~~~~~s~~~WsRG~g 190 (336)
T PF07470_consen 127 YMNLPFLAWAGKLTGD----------------PKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQGYADWSDSFWSRGNG 190 (336)
T ss_dssp HHHHHHHHHHHHHHTG----------------HHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTSSSTTST--BHHHHH
T ss_pred cccHHHHHHHHHHHCC----------------cHHHHHHHHHHHHHHHhccCCCCCceeeccCCCCCcCcccccCcchhh
Confidence 4568899999999998 8999999999999999999999999998864 34332222 445899
Q ss_pred HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHH
Q 003940 624 FLISGLLDLYEFGSG-----TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 698 (784)
Q Consensus 624 ~li~aLL~LYeaTgd-----~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~ 698 (784)
+++.|++++|+.+.+ +.+++.++++.+.+. .+.+ +.|.|+....+.. . ......|+.++++-.|+
T Consensus 191 W~~~Gl~~~l~~lp~~~~~~~~~~~~~~~~~~~l~-~~q~-~~G~w~~~~~~~~--~------~~~~etSatA~~a~~l~ 260 (336)
T PF07470_consen 191 WAIYGLAEVLEYLPEDHPERDELLEIAKKLADALA-RYQD-EDGLWYQDLDDPD--P------GNYRETSATAMFAYGLL 260 (336)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH-TTST-TTSBEBSBTTTTT--T------TS-BEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHH-hcCC-CCCCcceecCCCC--C------CCcccHHHHHHHHHHHH
Confidence 999999999999855 667777888887754 3445 4566655432211 1 11233588899999998
Q ss_pred H-HHHHhCCCCchHHHHHHHHHHHHHHHH
Q 003940 699 R-LASIVAGSKSDYYRQNAEHSLAVFETR 726 (784)
Q Consensus 699 r-L~~lt~~~~~~~y~e~A~~~l~~~~~~ 726 (784)
+ +..-..+ .+.|.+.|++.++.+...
T Consensus 261 ~gi~~g~~d--~~~y~~~a~~a~~~l~~~ 287 (336)
T PF07470_consen 261 RGIRLGLLD--PEEYRPAAEKALEALLSN 287 (336)
T ss_dssp HHHHTTSST--HHHHHHHHHHHHHHHHHC
T ss_pred HHHHcCCCc--cHHHHHHHHHHHHHHHhC
Confidence 7 3332222 478999999999998877
No 37
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.78 E-value=1.2e-08 Score=93.02 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=59.5
Q ss_pred chHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc---ccEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003940 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (784)
Q Consensus 126 ~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~---~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~ 202 (784)
+++++++++++ +++++|.|+++||+.|+.|.. .|+ ++++.++. ++...++|.++.+++.+.| ++.
T Consensus 4 ~~~~~~~~~~~-~~~vlv~f~a~wC~~C~~~~p-~l~--~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~I~ 71 (104)
T cd03000 4 DLDDSFKDVRK-EDIWLVDFYAPWCGHCKKLEP-VWN--EVGAELKSSGSPVRVGKLDATAYSSIASEF--------GVR 71 (104)
T ss_pred echhhhhhhcc-CCeEEEEEECCCCHHHHhhCh-HHH--HHHHHHHhcCCcEEEEEEECccCHhHHhhc--------CCc
Confidence 45788888755 789999999999999999986 565 56776643 4777889998888776655 889
Q ss_pred CCCcEEEEC
Q 003940 203 GWPLSVFLS 211 (784)
Q Consensus 203 G~P~~vfl~ 211 (784)
++|+++|+.
T Consensus 72 ~~Pt~~l~~ 80 (104)
T cd03000 72 GYPTIKLLK 80 (104)
T ss_pred cccEEEEEc
Confidence 999999994
No 38
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.76 E-value=2.4e-08 Score=91.33 Aligned_cols=73 Identities=10% Similarity=0.017 Sum_probs=53.3
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~p 216 (784)
.+|+|+|+|+++||+.|+.|.. .|+ ++++.. .+.+.++||.++.++... + ++. .++.|+||++|+ .+|+.
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p-~l~--~la~~~-~~v~~~~vd~d~~~~~~~-l---~~~-~~V~~~Pt~~~~-~~G~~ 83 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYP-TMV--KLSRTC-NDVVFLLVNGDENDSTME-L---CRR-EKIIEVPHFLFY-KDGEK 83 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhH-HHH--HHHHHC-CCCEEEEEECCCChHHHH-H---HHH-cCCCcCCEEEEE-eCCeE
Confidence 4999999999999999999864 343 344445 467889999987653221 1 111 288999998888 78988
Q ss_pred ecc
Q 003940 217 LMG 219 (784)
Q Consensus 217 i~~ 219 (784)
+..
T Consensus 84 v~~ 86 (103)
T cd02985 84 IHE 86 (103)
T ss_pred EEE
Confidence 754
No 39
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=98.75 E-value=3e-08 Score=88.75 Aligned_cols=78 Identities=23% Similarity=0.389 Sum_probs=64.0
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc--ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~--~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P 205 (784)
++.++++.+++++++|.|+++||+.|+.|+. .| .++++.+.. ++..+++|.++.+++.+.| ++.++|
T Consensus 3 ~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~-~~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------~i~~~P 71 (102)
T TIGR01126 3 ASNFDDIVLSNKDVLVEFYAPWCGHCKNLAP-EY--EKLAKELKGDPDIVLAKVDATAEKDLASRF--------GVSGFP 71 (102)
T ss_pred hhhHHHHhccCCcEEEEEECCCCHHHHhhCh-HH--HHHHHHhccCCceEEEEEEccchHHHHHhC--------CCCcCC
Confidence 3556666668999999999999999999965 45 467777876 6999999999888776655 889999
Q ss_pred cEEEECCCCce
Q 003940 206 LSVFLSPDLKP 216 (784)
Q Consensus 206 ~~vfl~pdg~p 216 (784)
+.+|+++++.+
T Consensus 72 ~~~~~~~~~~~ 82 (102)
T TIGR01126 72 TIKFFPKGKKP 82 (102)
T ss_pred EEEEecCCCcc
Confidence 99999988763
No 40
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.75 E-value=1.1e-08 Score=95.37 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=61.0
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
++++..+ ++|+|+|+|+++||+.|+.|+. .|+ ++++.+.+..+.++||+++.|++.+.| ++...|++
T Consensus 6 d~~i~~~--~~klVVVdF~a~WC~pCk~mdp-~l~--ela~~~~~~~~f~kVDVDev~dva~~y--------~I~amPtf 72 (114)
T cd02986 6 DQAIKST--AEKVLVLRFGRDEDAVCLQLDD-ILS--KTSHDLSKMASIYLVDVDKVPVYTQYF--------DISYIPST 72 (114)
T ss_pred HHHHHhc--CCCEEEEEEeCCCChhHHHHHH-HHH--HHHHHccCceEEEEEeccccHHHHHhc--------CceeCcEE
Confidence 5555555 7999999999999999999985 444 666666433778999999999999887 77789999
Q ss_pred EEECCCCcee
Q 003940 208 VFLSPDLKPL 217 (784)
Q Consensus 208 vfl~pdg~pi 217 (784)
+|+ .+|+.+
T Consensus 73 vff-kngkh~ 81 (114)
T cd02986 73 IFF-FNGQHM 81 (114)
T ss_pred EEE-ECCcEE
Confidence 977 556655
No 41
>PHA02278 thioredoxin-like protein
Probab=98.72 E-value=2.7e-08 Score=91.64 Aligned_cols=79 Identities=9% Similarity=0.086 Sum_probs=57.0
Q ss_pred HHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCC----ccHHHHHHHHHHHhcCCCCC
Q 003940 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER----PDVDKVYMTYVQALYGGGGW 204 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~----pdi~~~y~~~~q~~~g~~G~ 204 (784)
+-|++..++++||+|+|+|+||+.|+.|.. +|+ ++++..+.....++||+++. +++.+.| ++.|+
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p-~l~--~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~--------~I~~i 73 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKS-VIP--MFQESGDIKKPILTLNLDAEDVDREKAVKLF--------DIMST 73 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHH-HHH--HHHhhhcCCceEEEEECCccccccHHHHHHC--------CCccc
Confidence 445555578999999999999999999986 443 34443333334577777764 4555555 88999
Q ss_pred CcEEEECCCCceecc
Q 003940 205 PLSVFLSPDLKPLMG 219 (784)
Q Consensus 205 P~~vfl~pdg~pi~~ 219 (784)
||++|+. +|+.+..
T Consensus 74 PT~i~fk-~G~~v~~ 87 (103)
T PHA02278 74 PVLIGYK-DGQLVKK 87 (103)
T ss_pred cEEEEEE-CCEEEEE
Confidence 9999885 6887755
No 42
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.70 E-value=2.2e-08 Score=92.90 Aligned_cols=73 Identities=15% Similarity=0.158 Sum_probs=59.5
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (784)
+..+||++|.|+++||+.|+.|.. +|. ++++.+.. ++..++||.++.+++.+.| |+.++|+++|+. +
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p-~~~--~l~~~~~~~~v~~~~vd~d~~~~l~~~~--------~V~~~Pt~~i~~-~ 88 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEP-VWK--EVIQELEPLGVGIATVNAGHERRLARKL--------GAHSVPAIVGII-N 88 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhH-HHH--HHHHHHHhcCceEEEEeccccHHHHHHc--------CCccCCEEEEEE-C
Confidence 347899999999999999999986 455 67777764 5888899999877776555 899999999994 8
Q ss_pred Cceecc
Q 003940 214 LKPLMG 219 (784)
Q Consensus 214 g~pi~~ 219 (784)
|+.+..
T Consensus 89 g~~~~~ 94 (111)
T cd02963 89 GQVTFY 94 (111)
T ss_pred CEEEEE
Confidence 887654
No 43
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.70 E-value=3.7e-08 Score=89.19 Aligned_cols=79 Identities=15% Similarity=0.186 Sum_probs=64.0
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
.+-+++..+++|+++|.|+++||+.|+.|.. .|. ++++.+..++..++||.++.+++.+.| ++.++|+.
T Consensus 8 ~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~ 76 (101)
T cd03003 8 RGDFDAAVNSGEIWFVNFYSPRCSHCHDLAP-TWR--EFAKEMDGVIRIGAVNCGDDRMLCRSQ--------GVNSYPSL 76 (101)
T ss_pred HhhHHHHhcCCCeEEEEEECCCChHHHHhHH-HHH--HHHHHhcCceEEEEEeCCccHHHHHHc--------CCCccCEE
Confidence 3455666677899999999999999999976 555 577888777888999999888876655 88999999
Q ss_pred EEECCCCceec
Q 003940 208 VFLSPDLKPLM 218 (784)
Q Consensus 208 vfl~pdg~pi~ 218 (784)
+++ ++|+++.
T Consensus 77 ~~~-~~g~~~~ 86 (101)
T cd03003 77 YVF-PSGMNPE 86 (101)
T ss_pred EEE-cCCCCcc
Confidence 998 6787653
No 44
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.70 E-value=4.6e-08 Score=90.27 Aligned_cols=79 Identities=19% Similarity=0.347 Sum_probs=60.8
Q ss_pred HHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCCCc
Q 003940 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~-pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
+++..+++++||+||.|+++||+.|+.|... |+ ++++.+.. +++..+||.+.. .++.. ...++.++|+
T Consensus 12 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~-~~--~la~~~~~~~~~~~~vd~d~~~~~~~~-------~~~~v~~~Pt 81 (109)
T cd02993 12 EALAKGERRNQSTLVVLYAPWCPFCQAMEAS-YE--ELAEKLAGSNVKVAKFNADGEQREFAK-------EELQLKSFPT 81 (109)
T ss_pred HHHHhhhhcCCCEEEEEECCCCHHHHHHhHH-HH--HHHHHhccCCeEEEEEECCccchhhHH-------hhcCCCcCCE
Confidence 4566667889999999999999999999874 53 67888875 599999999863 33322 1137889999
Q ss_pred EEEECCCCcee
Q 003940 207 SVFLSPDLKPL 217 (784)
Q Consensus 207 ~vfl~pdg~pi 217 (784)
++|++++++..
T Consensus 82 i~~f~~~~~~~ 92 (109)
T cd02993 82 ILFFPKNSRQP 92 (109)
T ss_pred EEEEcCCCCCc
Confidence 99998876543
No 45
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.68 E-value=5.6e-08 Score=87.60 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=59.9
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh--cccEEEEEcCCC--CccHHHHHHHHHHHhcCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE--RPDVDKVYMTYVQALYGGGG 203 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln--~~FV~VkvD~ee--~pdi~~~y~~~~q~~~g~~G 203 (784)
+..++.+.+++++++|.|+++||+.|+.|... ++ ++++.+. ..++.+++|.++ .+.+.+.| |+.+
T Consensus 7 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~-~~--~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~--------~i~~ 75 (104)
T cd02997 7 DEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPE-FT--KAATELKEDGKGVLAAVDCTKPEHDALKEEY--------NVKG 75 (104)
T ss_pred hHhHHHHHhhCCCEEEEEECCCCHHHHHhCHH-HH--HHHHHHhhCCceEEEEEECCCCccHHHHHhC--------CCcc
Confidence 44677777889999999999999999999764 32 5666665 468888999987 55554433 8889
Q ss_pred CCcEEEECCCCceec
Q 003940 204 WPLSVFLSPDLKPLM 218 (784)
Q Consensus 204 ~P~~vfl~pdg~pi~ 218 (784)
+|+++++ ++|+++.
T Consensus 76 ~Pt~~~~-~~g~~~~ 89 (104)
T cd02997 76 FPTFKYF-ENGKFVE 89 (104)
T ss_pred ccEEEEE-eCCCeeE
Confidence 9998777 4677654
No 46
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.61 E-value=8.7e-08 Score=87.93 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=61.9
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc------ccEEEEEcCCCCccHHHHHHHHHHHhcCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND------WFVSIKVDREERPDVDKVYMTYVQALYGG 201 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~------~FV~VkvD~ee~pdi~~~y~~~~q~~~g~ 201 (784)
.+.++++.+++++++|.|+++||..|+.|.. +|+ ++++.+++ ++..++||.++.+++.+.| |+
T Consensus 8 ~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p-~~~--~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~--------~v 76 (108)
T cd02996 8 SGNIDDILQSAELVLVNFYADWCRFSQMLHP-IFE--EAAAKIKEEFPDAGKVVWGKVDCDKESDIADRY--------RI 76 (108)
T ss_pred HhhHHHHHhcCCEEEEEEECCCCHHHHhhHH-HHH--HHHHHHhhccCCCCcEEEEEEECCCCHHHHHhC--------CC
Confidence 5677778888999999999999999999986 455 55555542 3678899999888776665 89
Q ss_pred CCCCcEEEECCCCce
Q 003940 202 GGWPLSVFLSPDLKP 216 (784)
Q Consensus 202 ~G~P~~vfl~pdg~p 216 (784)
.++|+++|+ ++|++
T Consensus 77 ~~~Ptl~~~-~~g~~ 90 (108)
T cd02996 77 NKYPTLKLF-RNGMM 90 (108)
T ss_pred CcCCEEEEE-eCCcC
Confidence 999999998 67774
No 47
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.61 E-value=1.8e-07 Score=83.28 Aligned_cols=79 Identities=22% Similarity=0.351 Sum_probs=62.4
Q ss_pred HHHHHH-hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 129 EAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 129 eal~~A-k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
+.+... ++++|+|+|.|+++||+.|+.|.. .| .++++.++.+...++||.++.+.+.+.| ++.++|++
T Consensus 4 ~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~-~l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~P~~ 72 (101)
T TIGR01068 4 ANFDETIASSDKPVLVDFWAPWCGPCKMIAP-IL--EELAKEYEGKVKFVKLNVDENPDIAAKY--------GIRSIPTL 72 (101)
T ss_pred HHHHHHHhhcCCcEEEEEECCCCHHHHHhCH-HH--HHHHHHhcCCeEEEEEECCCCHHHHHHc--------CCCcCCEE
Confidence 344444 345779999999999999999986 45 4777778877999999999887765554 88899999
Q ss_pred EEECCCCceecc
Q 003940 208 VFLSPDLKPLMG 219 (784)
Q Consensus 208 vfl~pdg~pi~~ 219 (784)
+|+ ++|+++..
T Consensus 73 ~~~-~~g~~~~~ 83 (101)
T TIGR01068 73 LLF-KNGKEVDR 83 (101)
T ss_pred EEE-eCCcEeee
Confidence 999 68887644
No 48
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.61 E-value=1.1e-07 Score=83.82 Aligned_cols=80 Identities=24% Similarity=0.370 Sum_probs=66.3
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHH--hcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~l--n~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P 205 (784)
++.+..+.+++++++|.|+++||++|+.+.. .|+ ++++.+ +.++..++||.++.+.+.+.| ++.++|
T Consensus 5 ~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~-~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~i~~~P 73 (101)
T cd02961 5 DDNFDELVKDSKDVLVEFYAPWCGHCKALAP-EYE--KLAKELKGDGKVVVAKVDCTANNDLCSEY--------GVRGYP 73 (101)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhhhH-HHH--HHHHHhccCCceEEEEeeccchHHHHHhC--------CCCCCC
Confidence 5678888888999999999999999999976 443 677778 578999999999877776655 889999
Q ss_pred cEEEECCCCceec
Q 003940 206 LSVFLSPDLKPLM 218 (784)
Q Consensus 206 ~~vfl~pdg~pi~ 218 (784)
+.+++.++|+...
T Consensus 74 t~~~~~~~~~~~~ 86 (101)
T cd02961 74 TIKLFPNGSKEPV 86 (101)
T ss_pred EEEEEcCCCcccc
Confidence 9999998864443
No 49
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.60 E-value=1.1e-07 Score=86.38 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=61.7
Q ss_pred HHHHHH-hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 129 EAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 129 eal~~A-k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
+.++.. +..++|++|.|+++||+.|+.|.. .|+ ++++.+......++||.++.+++.+.| ++.++|++
T Consensus 9 ~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p-~~~--~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~i~~~Pt~ 77 (104)
T cd03004 9 EDFPELVLNRKEPWLVDFYAPWCGPCQALLP-ELR--KAARALKGKVKVGSVDCQKYESLCQQA--------NIRAYPTI 77 (104)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCHHHHHHHH-HHH--HHHHHhcCCcEEEEEECCchHHHHHHc--------CCCcccEE
Confidence 344444 566889999999999999999975 443 566666666778899999888776555 89999999
Q ss_pred EEECCCCceecc
Q 003940 208 VFLSPDLKPLMG 219 (784)
Q Consensus 208 vfl~pdg~pi~~ 219 (784)
+++.++|++...
T Consensus 78 ~~~~~g~~~~~~ 89 (104)
T cd03004 78 RLYPGNASKYHS 89 (104)
T ss_pred EEEcCCCCCceE
Confidence 999877565543
No 50
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.60 E-value=1e-07 Score=93.85 Aligned_cols=114 Identities=15% Similarity=0.116 Sum_probs=73.1
Q ss_pred HHHHHHHh--hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003940 128 EEAFAEAR--KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (784)
Q Consensus 128 ~eal~~Ak--~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~ 204 (784)
++.+++.. ..+++++|+|+++||+.|+.|.. +|+ ++++.++. ++..++||.++.|++.+.|. .+.-.++.++
T Consensus 35 ~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p-~l~--~la~~~~~~~v~f~~VDvd~~~~la~~~~--V~~~~~v~~~ 109 (152)
T cd02962 35 PKTLEEELERDKRVTWLVEFFTTWSPECVNFAP-VFA--ELSLKYNNNNLKFGKIDIGRFPNVAEKFR--VSTSPLSKQL 109 (152)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHH-HHH--HHHHHcccCCeEEEEEECCCCHHHHHHcC--ceecCCcCCC
Confidence 34455543 34689999999999999999975 455 56666653 58899999999999887661 0000123459
Q ss_pred CcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHHHHhhc
Q 003940 205 PLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKK 248 (784)
Q Consensus 205 P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~ 248 (784)
||++++. +|+++....+ +..++.+.-++---++.|.+.++-+
T Consensus 110 PT~ilf~-~Gk~v~r~~G-~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (152)
T cd02962 110 PTIILFQ-GGKEVARRPY-YNDSKGRAVPFTFSKENVIRHFDLD 151 (152)
T ss_pred CEEEEEE-CCEEEEEEec-cccCccccccccccHHHHHHhcccC
Confidence 9999885 8999876433 2222222222222246666555433
No 51
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.57 E-value=1.1e-07 Score=89.16 Aligned_cols=77 Identities=13% Similarity=-0.047 Sum_probs=62.3
Q ss_pred HHHHHHH---hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHH-HHHHHHHHHhcCCCC
Q 003940 128 EEAFAEA---RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVD-KVYMTYVQALYGGGG 203 (784)
Q Consensus 128 ~eal~~A---k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~-~~y~~~~q~~~g~~G 203 (784)
++-|..+ .+++++++|.|+++||+.|+.|.. .|+ ++++.++.....++||.++.+++. +.| ++.|
T Consensus 16 ~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p-~~~--~la~~~~~~v~~~~Vd~d~~~~l~~~~~--------~I~~ 84 (113)
T cd03006 16 KGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQ-EFE--QVAQKLSDQVLFVAINCWWPQGKCRKQK--------HFFY 84 (113)
T ss_pred hhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHH-HHH--HHHHHhcCCeEEEEEECCCChHHHHHhc--------CCcc
Confidence 4556665 689999999999999999999976 554 788888777777999999888775 355 7889
Q ss_pred CCcEEEECCCCce
Q 003940 204 WPLSVFLSPDLKP 216 (784)
Q Consensus 204 ~P~~vfl~pdg~p 216 (784)
+||.+++ .+|+.
T Consensus 85 ~PTl~lf-~~g~~ 96 (113)
T cd03006 85 FPVIHLY-YRSRG 96 (113)
T ss_pred cCEEEEE-ECCcc
Confidence 9999999 56663
No 52
>PTZ00051 thioredoxin; Provisional
Probab=98.54 E-value=1.9e-07 Score=83.69 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=61.9
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
++.+.++.+++++|+|.|+++||..|+.|.. .|+ ++++... ++..++||.++.+++.+.| ++.++|++
T Consensus 8 ~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~-~l~--~l~~~~~-~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~ 75 (98)
T PTZ00051 8 QAEFESTLSQNELVIVDFYAEWCGPCKRIAP-FYE--ECSKEYT-KMVFVKVDVDELSEVAEKE--------NITSMPTF 75 (98)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHcC-CcEEEEEECcchHHHHHHC--------CCceeeEE
Confidence 5677888889999999999999999999975 443 4444443 5778889988776665554 88999998
Q ss_pred EEECCCCceecc
Q 003940 208 VFLSPDLKPLMG 219 (784)
Q Consensus 208 vfl~pdg~pi~~ 219 (784)
+++ .+|+++..
T Consensus 76 ~~~-~~g~~~~~ 86 (98)
T PTZ00051 76 KVF-KNGSVVDT 86 (98)
T ss_pred EEE-eCCeEEEE
Confidence 877 78988754
No 53
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=98.53 E-value=2.3e-07 Score=84.66 Aligned_cols=69 Identities=19% Similarity=0.313 Sum_probs=55.6
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCC--CccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee--~pdi~~~y~~~~q~~~g~~G~P~~vfl~p 212 (784)
++.+||++|.|+++||..|+.|.. .|+ ++++.++..+..++||.++ .+++.+.| ++.|+|+.+|+.+
T Consensus 15 ~~~~~~~lv~f~a~wC~~C~~~~~-~~~--~~a~~~~~~~~~~~v~~~~~~~~~~~~~~--------~i~~~Pt~~~~~~ 83 (109)
T cd03002 15 HNTNYTTLVEFYAPWCGHCKNLKP-EYA--KAAKELDGLVQVAAVDCDEDKNKPLCGKY--------GVQGFPTLKVFRP 83 (109)
T ss_pred hcCCCeEEEEEECCCCHHHHhhCh-HHH--HHHHHhcCCceEEEEecCccccHHHHHHc--------CCCcCCEEEEEeC
Confidence 567999999999999999999986 444 5777787667777788776 55555544 8899999999988
Q ss_pred CC
Q 003940 213 DL 214 (784)
Q Consensus 213 dg 214 (784)
++
T Consensus 84 ~~ 85 (109)
T cd03002 84 PK 85 (109)
T ss_pred CC
Confidence 76
No 54
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=1.6e-07 Score=87.04 Aligned_cols=77 Identities=23% Similarity=0.321 Sum_probs=59.2
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
+.....+.+.+|+|.|+|+++||+.|+.|+. .|. +++...++ -+.+|||.+|.+++.+.| ++.+.||+
T Consensus 11 ~~~~~~~~~~~kliVvdF~a~wCgPCk~i~P-~~~--~La~~y~~-v~Flkvdvde~~~~~~~~--------~V~~~PTf 78 (106)
T KOG0907|consen 11 DLVLSAAEAGDKLVVVDFYATWCGPCKAIAP-KFE--KLAEKYPD-VVFLKVDVDELEEVAKEF--------NVKAMPTF 78 (106)
T ss_pred HHHHHHhhCCCCeEEEEEECCCCcchhhhhh-HHH--HHHHHCCC-CEEEEEecccCHhHHHhc--------CceEeeEE
Confidence 5666777777899999999999999999986 222 44444543 889999999855555554 88899999
Q ss_pred EEECCCCcee
Q 003940 208 VFLSPDLKPL 217 (784)
Q Consensus 208 vfl~pdg~pi 217 (784)
+|+ .+|+.+
T Consensus 79 ~f~-k~g~~~ 87 (106)
T KOG0907|consen 79 VFY-KGGEEV 87 (106)
T ss_pred EEE-ECCEEE
Confidence 999 556554
No 55
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.50 E-value=1.9e-07 Score=80.60 Aligned_cols=76 Identities=24% Similarity=0.347 Sum_probs=58.1
Q ss_pred HHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003940 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (784)
Q Consensus 131 l~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl 210 (784)
++.+-+++++++|.|+++||++|+.+.. .++ ++++. +.++..+++|.++.+++.+.| ++.++|+++++
T Consensus 3 ~~~~~~~~~~~ll~~~~~~C~~C~~~~~-~~~--~~~~~-~~~~~~~~i~~~~~~~~~~~~--------~v~~~P~~~~~ 70 (93)
T cd02947 3 FEELIKSAKPVVVDFWAPWCGPCKAIAP-VLE--ELAEE-YPKVKFVKVDVDENPELAEEY--------GVRSIPTFLFF 70 (93)
T ss_pred hHHHHhcCCcEEEEEECCCChhHHHhhH-HHH--HHHHH-CCCceEEEEECCCChhHHHhc--------CcccccEEEEE
Confidence 4556666799999999999999999986 333 34444 567899999999877766555 78899999988
Q ss_pred CCCCceecc
Q 003940 211 SPDLKPLMG 219 (784)
Q Consensus 211 ~pdg~pi~~ 219 (784)
. +|+++..
T Consensus 71 ~-~g~~~~~ 78 (93)
T cd02947 71 K-NGKEVDR 78 (93)
T ss_pred E-CCEEEEE
Confidence 5 5665543
No 56
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.50 E-value=2e-07 Score=85.14 Aligned_cols=67 Identities=13% Similarity=0.277 Sum_probs=54.8
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~e-e~pdi~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (784)
...||+|+|.|+++||+.|+.|.. .|+ ++++.+. .+..++||.+ +.+++.+.| ++.++||++|+++.
T Consensus 15 ~~~g~~vlV~F~a~WC~~C~~~~p-~l~--~la~~~~-~~~~~~vd~~~~~~~l~~~~--------~V~~~PT~~lf~~g 82 (100)
T cd02999 15 FNREDYTAVLFYASWCPFSASFRP-HFN--ALSSMFP-QIRHLAIEESSIKPSLLSRY--------GVVGFPTILLFNST 82 (100)
T ss_pred hcCCCEEEEEEECCCCHHHHhHhH-HHH--HHHHHhc-cCceEEEECCCCCHHHHHhc--------CCeecCEEEEEcCC
Confidence 467999999999999999999976 444 5666665 5778899988 678777665 88999999999765
No 57
>PRK09381 trxA thioredoxin; Provisional
Probab=98.50 E-value=3.8e-07 Score=83.67 Aligned_cols=73 Identities=16% Similarity=0.258 Sum_probs=60.1
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg 214 (784)
.+.++|++|.|+++||+.|+.|.. .|+ ++++.++..+..++||.++.+.+.+.| ++.++|+++|+ ++|
T Consensus 18 ~~~~~~vvv~f~~~~C~~C~~~~p-~~~--~l~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 85 (109)
T PRK09381 18 LKADGAILVDFWAEWCGPCKMIAP-ILD--EIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLF-KNG 85 (109)
T ss_pred hcCCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHhCCCcEEEEEECCCChhHHHhC--------CCCcCCEEEEE-eCC
Confidence 456999999999999999999975 444 667777767888999999888776554 88899999999 689
Q ss_pred ceecc
Q 003940 215 KPLMG 219 (784)
Q Consensus 215 ~pi~~ 219 (784)
+++..
T Consensus 86 ~~~~~ 90 (109)
T PRK09381 86 EVAAT 90 (109)
T ss_pred eEEEE
Confidence 88754
No 58
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.49 E-value=2.7e-07 Score=82.52 Aligned_cols=76 Identities=25% Similarity=0.319 Sum_probs=61.0
Q ss_pred HHHHhh-cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003940 131 FAEARK-RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (784)
Q Consensus 131 l~~Ak~-e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vf 209 (784)
++..-. .+++++|.|+++||+.|+.|.. .|+ ++++.+..+...++||.++.+++.+.| ++.++|+.+|
T Consensus 9 f~~~i~~~~~~vvv~f~~~~C~~C~~~~~-~~~--~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~ 77 (103)
T PF00085_consen 9 FEKFINESDKPVVVYFYAPWCPPCKAFKP-ILE--KLAKEYKDNVKFAKVDCDENKELCKKY--------GVKSVPTIIF 77 (103)
T ss_dssp HHHHHTTTSSEEEEEEESTTSHHHHHHHH-HHH--HHHHHTTTTSEEEEEETTTSHHHHHHT--------TCSSSSEEEE
T ss_pred HHHHHHccCCCEEEEEeCCCCCccccccc-eec--ccccccccccccchhhhhccchhhhcc--------CCCCCCEEEE
Confidence 444444 4899999999999999999975 444 677777778999999999888877766 8999999999
Q ss_pred ECCCCceec
Q 003940 210 LSPDLKPLM 218 (784)
Q Consensus 210 l~pdg~pi~ 218 (784)
+.. |+...
T Consensus 78 ~~~-g~~~~ 85 (103)
T PF00085_consen 78 FKN-GKEVK 85 (103)
T ss_dssp EET-TEEEE
T ss_pred EEC-CcEEE
Confidence 855 55543
No 59
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.45 E-value=3.9e-07 Score=81.94 Aligned_cols=72 Identities=24% Similarity=0.404 Sum_probs=57.4
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh--cccEEEEEcCCC-CccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE-RPDVDKVYMTYVQALYGGGGWPLSVFL 210 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln--~~FV~VkvD~ee-~pdi~~~y~~~~q~~~g~~G~P~~vfl 210 (784)
.++.+|+++|.|+++||+.|+.|.. .|. ++++.+. .+++.+++|.++ .+++.+.| ++.++|+++|+
T Consensus 14 ~~~~~~~~~v~f~a~~C~~C~~~~~-~~~--~~~~~~~~~~~~~~~~id~~~~~~~~~~~~--------~i~~~P~~~~~ 82 (105)
T cd02998 14 VGDDKKDVLVEFYAPWCGHCKNLAP-EYE--KLAAVFANEDDVVIAKVDADEANKDLAKKY--------GVSGFPTLKFF 82 (105)
T ss_pred hcCCCCcEEEEEECCCCHHHHhhCh-HHH--HHHHHhCCCCCEEEEEEECCCcchhhHHhC--------CCCCcCEEEEE
Confidence 3456789999999999999999965 333 5666664 469999999998 77776655 78899999999
Q ss_pred CCCCce
Q 003940 211 SPDLKP 216 (784)
Q Consensus 211 ~pdg~p 216 (784)
.++|+.
T Consensus 83 ~~~~~~ 88 (105)
T cd02998 83 PKGSTE 88 (105)
T ss_pred eCCCCC
Confidence 887654
No 60
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.45 E-value=4.9e-07 Score=81.28 Aligned_cols=73 Identities=22% Similarity=0.362 Sum_probs=55.5
Q ss_pred HHHH-HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc--ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 130 AFAE-ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 130 al~~-Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~--~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
.++. .++++|+++|.|+++||.+|+.|.. .| .++++.+++ ++..+++|.++. ++...+ ++.++|+
T Consensus 9 ~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~-~~--~~~~~~~~~~~~~~~~~id~~~~-~~~~~~--------~~~~~Pt 76 (104)
T cd02995 9 NFDEVVLDSDKDVLVEFYAPWCGHCKALAP-IY--EELAEKLKGDDNVVIAKMDATAN-DVPSEF--------VVDGFPT 76 (104)
T ss_pred hhHHHHhCCCCcEEEEEECCCCHHHHHHhh-HH--HHHHHHhcCCCCEEEEEEeCcch-hhhhhc--------cCCCCCE
Confidence 3434 3566799999999999999999976 34 577777765 699999999864 343333 5689999
Q ss_pred EEEECCCC
Q 003940 207 SVFLSPDL 214 (784)
Q Consensus 207 ~vfl~pdg 214 (784)
.+++.+++
T Consensus 77 ~~~~~~~~ 84 (104)
T cd02995 77 ILFFPAGD 84 (104)
T ss_pred EEEEcCCC
Confidence 99997655
No 61
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.44 E-value=5.2e-07 Score=81.07 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=60.6
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc---ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~---~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~ 204 (784)
.+.++.+-.++ +++|.|+++||+.|+.|.. .|+ ++++.+.. .+..++||.++.+++.+.| ++.++
T Consensus 7 ~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p-~~~--~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~ 74 (102)
T cd03005 7 EDNFDHHIAEG-NHFVKFFAPWCGHCKRLAP-TWE--QLAKKFNNENPSVKIAKVDCTQHRELCSEF--------QVRGY 74 (102)
T ss_pred HHHHHHHhhcC-CEEEEEECCCCHHHHHhCH-HHH--HHHHHHhccCCcEEEEEEECCCChhhHhhc--------CCCcC
Confidence 45566666555 5999999999999999976 465 56666654 6889999999888766555 78899
Q ss_pred CcEEEECCCCceec
Q 003940 205 PLSVFLSPDLKPLM 218 (784)
Q Consensus 205 P~~vfl~pdg~pi~ 218 (784)
|+++|+ ++|+++.
T Consensus 75 Pt~~~~-~~g~~~~ 87 (102)
T cd03005 75 PTLLLF-KDGEKVD 87 (102)
T ss_pred CEEEEE-eCCCeee
Confidence 999999 6777653
No 62
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=98.44 E-value=1.9e-05 Score=87.31 Aligned_cols=157 Identities=17% Similarity=0.132 Sum_probs=106.9
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeE-EEEecCCCCCCCCCcc
Q 003940 542 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRL-QHSFRNGPSKAPGFLD 620 (784)
Q Consensus 542 itsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l-~~~~~dg~~~~~~~le 620 (784)
=..-.++++-|++.++.+.. ++..++-..+.+.+.++|++++++.. +....++.. +--.+
T Consensus 114 d~Y~haFallA~A~~a~a~~-----------------~~a~~~~~~a~~~l~~~~~~~~~pl~~~e~~~~~~~--pl~sN 174 (388)
T COG2942 114 DLYGHAFALLAAAHAATAGP-----------------PRADELLDEALDVLERRFWREEHPLGGFEEDNPGSA--PLGSN 174 (388)
T ss_pred hHHHHHHHHHHHHHHHhcCC-----------------hhHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCC--ccCCC
Confidence 33456888889999877654 45556666677777888888765321 111222222 22456
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHH
Q 003940 621 DYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL 700 (784)
Q Consensus 621 DyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL 700 (784)
.++++.+|+|..|++|++..|++.|.+|.+.+..+|.|.++|.-.+....+.......+. -+-+|..--=-+.-|+++
T Consensus 175 p~MHl~EA~LA~~e~~~~~~~~~~A~~ia~l~~~rf~d~~~g~v~E~fd~dW~p~~~frg--~~~ePGH~fEW~~Lll~~ 252 (388)
T COG2942 175 PHMHLLEAMLAAYEATGEKTWLDRADRIADLIISRFADAESGLVREHFDHDWNPAHGFRG--RGIEPGHQFEWAWLLLDI 252 (388)
T ss_pred cchHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHhhhcccCcHhhhccccCCcCCCccc--CCCCCchHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999998644444444322222222 144566665577778899
Q ss_pred HHHhCCCCchHHHHHHHHHHHH
Q 003940 701 ASIVAGSKSDYYRQNAEHSLAV 722 (784)
Q Consensus 701 ~~lt~~~~~~~y~e~A~~~l~~ 722 (784)
+++.++ ......|+.++..
T Consensus 253 a~~~~~---~~l~~~A~~lf~~ 271 (388)
T COG2942 253 ARRRGR---AWLIEAARRLFDI 271 (388)
T ss_pred HHHhch---hHHHHHHHHHHHH
Confidence 998774 4455555555443
No 63
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=5.4e-07 Score=96.10 Aligned_cols=91 Identities=24% Similarity=0.340 Sum_probs=72.0
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~ 215 (784)
...+||+|+||++||+.|+.+.. ++ ..++.--+-.|+.+|||.++.|+|...| |+.++|+.|.+ .||+
T Consensus 41 S~~~PVlV~fWap~~~~c~qL~p-~L--ekla~~~~G~f~LakvN~D~~p~vAaqf--------giqsIPtV~af-~dGq 108 (304)
T COG3118 41 SREVPVLVDFWAPWCGPCKQLTP-TL--EKLAAEYKGKFKLAKVNCDAEPMVAAQF--------GVQSIPTVYAF-KDGQ 108 (304)
T ss_pred ccCCCeEEEecCCCCchHHHHHH-HH--HHHHHHhCCceEEEEecCCcchhHHHHh--------CcCcCCeEEEe-eCCc
Confidence 44579999999999999999875 22 3566667778999999999999999877 99999998866 8999
Q ss_pred eecccc-ccCCCCCCCcchHHHHHHHHHHH
Q 003940 216 PLMGGT-YFPPEDKYGRPGFKTILRKVKDA 244 (784)
Q Consensus 216 pi~~~t-Y~p~~~~~~~~~f~~~L~~i~~~ 244 (784)
|+-+.. -.|.+ ...+.|+++...
T Consensus 109 pVdgF~G~qPes------qlr~~ld~~~~~ 132 (304)
T COG3118 109 PVDGFQGAQPES------QLRQFLDKVLPA 132 (304)
T ss_pred CccccCCCCcHH------HHHHHHHHhcCh
Confidence 998743 34432 466677776644
No 64
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.41 E-value=1.5e-06 Score=90.75 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=58.7
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~p 216 (784)
.++|++|.|+++||+.|+.|... | .++++.+...+...+||.++.+++.+.| ++.|+|++++++ +|++
T Consensus 51 ~~~~vlV~FyApWC~~Ck~~~P~-~--e~la~~~~~~v~~~~VD~~~~~~l~~~~--------~I~~~PTl~~f~-~G~~ 118 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHCRKMAPA-W--ERLAKALKGQVNVADLDATRALNLAKRF--------AIKGYPTLLLFD-KGKM 118 (224)
T ss_pred CCCCEEEEEECCCChHHHHHHHH-H--HHHHHHcCCCeEEEEecCcccHHHHHHc--------CCCcCCEEEEEE-CCEE
Confidence 47999999999999999999874 4 4778888766777889999888877666 899999999997 7876
Q ss_pred ec
Q 003940 217 LM 218 (784)
Q Consensus 217 i~ 218 (784)
+.
T Consensus 119 v~ 120 (224)
T PTZ00443 119 YQ 120 (224)
T ss_pred EE
Confidence 53
No 65
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.40 E-value=1e-06 Score=82.34 Aligned_cols=97 Identities=21% Similarity=0.323 Sum_probs=68.3
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
.+.+.++.+.+++|+|.|+++||++|+.|.. .++ ++++.. +..-.++||.++.|++...| ++.+.|+.
T Consensus 12 ~~~~~~~l~~~~~vvv~f~a~wC~~C~~~~~-~l~--~la~~~-~~i~~~~vd~d~~~~l~~~~--------~v~~vPt~ 79 (113)
T cd02975 12 KEEFFKEMKNPVDLVVFSSKEGCQYCEVTKQ-LLE--ELSELS-DKLKLEIYDFDEDKEKAEKY--------GVERVPTT 79 (113)
T ss_pred HHHHHHHhCCCeEEEEEeCCCCCCChHHHHH-HHH--HHHHhc-CceEEEEEeCCcCHHHHHHc--------CCCcCCEE
Confidence 3445555677889999999999999999975 444 344443 45567889999888877766 88999999
Q ss_pred EEECCC---CceeccccccCCCCCCCcchHHHHHHHHHH
Q 003940 208 VFLSPD---LKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (784)
Q Consensus 208 vfl~pd---g~pi~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (784)
+++..+ |+..+.| .|+. ..|.++++.|..
T Consensus 80 ~i~~~g~~~~~~~~~G--~~~~-----~el~~~i~~i~~ 111 (113)
T cd02975 80 IFLQDGGKDGGIRYYG--LPAG-----YEFASLIEDIVR 111 (113)
T ss_pred EEEeCCeecceEEEEe--cCch-----HHHHHHHHHHHh
Confidence 999753 3222221 3433 368888877653
No 66
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.40 E-value=1.1e-06 Score=87.80 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=57.4
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHH---------------HHHhcC
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQALYG 200 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~---------------~q~~~g 200 (784)
..+|+|+|+|+++||+.|+.+. |.+.++.++++..|.|+.++.++-...|.+. ....++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~------p~l~~l~~~~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~ 134 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEH------PYLNELAKDGLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLG 134 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHH------HHHHHHHHcCCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcC
Confidence 4689999999999999999875 4555666667888888875433211222110 112247
Q ss_pred CCCCCcEEEECCCCceeccc-cccC
Q 003940 201 GGGWPLSVFLSPDLKPLMGG-TYFP 224 (784)
Q Consensus 201 ~~G~P~~vfl~pdg~pi~~~-tY~p 224 (784)
+.|+|++++++++|++++.. +.++
T Consensus 135 v~~~P~~~~id~~G~i~~~~~G~~~ 159 (173)
T TIGR00385 135 VYGAPETFLVDGNGVILYRHAGPLN 159 (173)
T ss_pred CeeCCeEEEEcCCceEEEEEeccCC
Confidence 78999999999999998763 3344
No 67
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.40 E-value=6.9e-07 Score=83.47 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=63.0
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
.+.+.++.+++++|+|.|+++||..|+.|.. +++ ++++... +...++||.++.+++.+.| ++.++|+.
T Consensus 12 ~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p-~l~--~la~~~~-~i~f~~Vd~~~~~~l~~~~--------~v~~vPt~ 79 (113)
T cd02989 12 EKEFFEIVKSSERVVCHFYHPEFFRCKIMDK-HLE--ILAKKHL-ETKFIKVNAEKAPFLVEKL--------NIKVLPTV 79 (113)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCccHHHHHH-HHH--HHHHHcC-CCEEEEEEcccCHHHHHHC--------CCccCCEE
Confidence 4677777788899999999999999999985 333 4444443 4788999999999888776 88999999
Q ss_pred EEECCCCceecc
Q 003940 208 VFLSPDLKPLMG 219 (784)
Q Consensus 208 vfl~pdg~pi~~ 219 (784)
+|+. +|+.+..
T Consensus 80 l~fk-~G~~v~~ 90 (113)
T cd02989 80 ILFK-NGKTVDR 90 (113)
T ss_pred EEEE-CCEEEEE
Confidence 9986 6787754
No 68
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.39 E-value=8.2e-07 Score=84.09 Aligned_cols=95 Identities=17% Similarity=0.075 Sum_probs=67.1
Q ss_pred HHHHHH-hhcCCcEEEEEcccCChh--hh--hhhhcccCCHHHHH-HH-hcccEEEEEcCCCCccHHHHHHHHHHHhcCC
Q 003940 129 EAFAEA-RKRDVPIFLSIGYSTCHW--CH--VMEVESFEDEGVAK-LL-NDWFVSIKVDREERPDVDKVYMTYVQALYGG 201 (784)
Q Consensus 129 eal~~A-k~e~KpI~l~~~~~wC~w--C~--~Me~etf~d~eVa~-~l-n~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~ 201 (784)
+-|++. ++..+||+++|++.||+. |+ .|+. ++. ++++ +| ......+|||+++.+++.+.| |+
T Consensus 17 ~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p-~~~--~~aa~~l~~~~v~~~kVD~d~~~~La~~~--------~I 85 (120)
T cd03065 17 KNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEE-LVL--ELAAQVLEDKGIGFGLVDSKKDAKVAKKL--------GL 85 (120)
T ss_pred hhHHHHHHhCCceEEEEECCCcCChhhChhhcchh-hHH--HHHHHHhhcCCCEEEEEeCCCCHHHHHHc--------CC
Confidence 344444 556679999999999988 99 6653 222 3344 44 446999999999999999887 89
Q ss_pred CCCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHH
Q 003940 202 GGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 241 (784)
Q Consensus 202 ~G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i 241 (784)
.|+||.+++. +|+++.-.+..+++ .+.+.|+++
T Consensus 86 ~~iPTl~lfk-~G~~v~~~G~~~~~------~l~~~l~~~ 118 (120)
T cd03065 86 DEEDSIYVFK-DDEVIEYDGEFAAD------TLVEFLLDL 118 (120)
T ss_pred ccccEEEEEE-CCEEEEeeCCCCHH------HHHHHHHHH
Confidence 9999999995 89877533444433 555555543
No 69
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases. Some members of this subgroup lack the zinc binding site and the active site residues, and therefore are most likely inactive. The function of this domain is unknown.
Probab=98.37 E-value=3.4e-05 Score=83.84 Aligned_cols=135 Identities=18% Similarity=0.070 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li 626 (784)
+=++++|+++++++++ ++|++.|+++.+++.+++++.+ ++.+++ +++......+....+=++
T Consensus 142 aGi~~~L~~l~~~t~d----------------~~~l~~A~~~~~~~~~~~~~~~-~g~~~~-~~~~~~~~~wchG~aGi~ 203 (321)
T cd04791 142 AGIALFLLRLYKATGD----------------SRYLELAEEALDKELARAVVDD-GGLLQV-DEGARLLPYLCSGSAGLG 203 (321)
T ss_pred HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHhhccCC-CCceEc-CCCCccCcccCCCcHHHH
Confidence 6678889999999998 8999999999999999987654 444442 333334557888889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCC
Q 003940 627 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (784)
Q Consensus 627 ~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~ 706 (784)
.+++.++++|+|++|++.|+++.+.+...++. +- ..-.|.+=.+..|+.++..+++
T Consensus 204 ~~l~~l~~~~~d~~~~~~a~~~~~~~~~~~~~--~~----------------------~lchG~~G~~~~l~~~~~~~~~ 259 (321)
T cd04791 204 LLMLRLEAITGDKRWRDEADGIAHAALSSCYA--NP----------------------GLFSGTAGLGAHLNDLAAEGDN 259 (321)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhhhcc--Cc----------------------cccCCcHhHHHHHHhhcccccC
Confidence 99999999999999999999999888765421 10 1123344456677788888875
Q ss_pred CCchHHHHHHHHHHHHHHHH
Q 003940 707 SKSDYYRQNAEHSLAVFETR 726 (784)
Q Consensus 707 ~~~~~y~e~A~~~l~~~~~~ 726 (784)
++|++.|.++...+...
T Consensus 260 ---~~~~~~~~~~~~~~~~~ 276 (321)
T cd04791 260 ---ALYKAAAERLALYLIAT 276 (321)
T ss_pred ---hHHHHHHHHHHHHhccc
Confidence 78999998877666543
No 70
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.36 E-value=1e-06 Score=83.65 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=56.3
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHH--HHHHHHHHHh---cCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVD--KVYMTYVQAL---YGGG 202 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~--~~y~~~~q~~---~g~~ 202 (784)
.+.+...-++++.++|.||++||+||+.|.. .+ .++++..+..|+.|.+|.+..+++. ..+..+.+.. .++.
T Consensus 13 ~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P-~l--~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~ 89 (122)
T TIGR01295 13 VVRALEALDKKETATFFIGRKTCPYCRKFSG-TL--SGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFM 89 (122)
T ss_pred HHHHHHHHHcCCcEEEEEECCCChhHHHHhH-HH--HHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCC
Confidence 3556666688999999999999999999975 33 2444443333555555544322322 1223332222 3677
Q ss_pred CCCcEEEECCCCceecc
Q 003940 203 GWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 203 G~P~~vfl~pdg~pi~~ 219 (784)
|+||.+++ .+|+++..
T Consensus 90 ~~PT~v~~-k~Gk~v~~ 105 (122)
T TIGR01295 90 GTPTFVHI-TDGKQVSV 105 (122)
T ss_pred CCCEEEEE-eCCeEEEE
Confidence 89999977 67887765
No 71
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.33 E-value=1.4e-06 Score=78.50 Aligned_cols=75 Identities=17% Similarity=0.283 Sum_probs=58.9
Q ss_pred HHHHHHH-hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal~~A-k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
++.++.. .+.+++++|.|+++||+.|+.|.. .| .++++.+...+..+++|.++.+++.+.| ++.++|+
T Consensus 7 ~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~-~~--~~~~~~~~~~~~~~~id~~~~~~~~~~~--------~i~~~P~ 75 (103)
T cd03001 7 DSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAP-EW--KKAAKALKGIVKVGAVDADVHQSLAQQY--------GVRGFPT 75 (103)
T ss_pred HHhHHHHHhcCCCcEEEEEECCCCHHHHHHhH-HH--HHHHHHhcCCceEEEEECcchHHHHHHC--------CCCccCE
Confidence 4555555 456778999999999999999975 34 3567677667888999999888776554 8899999
Q ss_pred EEEECCC
Q 003940 207 SVFLSPD 213 (784)
Q Consensus 207 ~vfl~pd 213 (784)
.+++.++
T Consensus 76 ~~~~~~~ 82 (103)
T cd03001 76 IKVFGAG 82 (103)
T ss_pred EEEECCC
Confidence 9999765
No 72
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.33 E-value=1.8e-06 Score=87.44 Aligned_cols=78 Identities=10% Similarity=0.118 Sum_probs=54.8
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHH---------------HHHhcCC
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQALYGG 201 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~---------------~q~~~g~ 201 (784)
.+|+|+|.|+++||+.|+.+.. .+.++-++++..|-|+.++.++..+.|++. ....+|+
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p------~l~~l~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQ------YLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHH------HHHHHHHcCCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 6999999999999999998754 334443456767777765544433333221 1123478
Q ss_pred CCCCcEEEECCCCceeccc
Q 003940 202 GGWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 202 ~G~P~~vfl~pdg~pi~~~ 220 (784)
.|+|+++|+|++|++.+..
T Consensus 141 ~~~P~t~vid~~G~i~~~~ 159 (185)
T PRK15412 141 YGAPETFLIDGNGIIRYRH 159 (185)
T ss_pred CcCCeEEEECCCceEEEEE
Confidence 8999999999999988763
No 73
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.32 E-value=1.5e-06 Score=78.46 Aligned_cols=74 Identities=15% Similarity=0.135 Sum_probs=56.0
Q ss_pred HHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
+.+++.. +++ ++|.|+++||+.|+.|.. .|+ ++++.++. .+...+||.++.+++.+.| ++.++|++
T Consensus 9 ~~f~~~~-~~~-~lv~f~a~wC~~C~~~~p-~~~--~l~~~~~~~~v~~~~vd~~~~~~~~~~~--------~i~~~Pt~ 75 (101)
T cd02994 9 SNWTLVL-EGE-WMIEFYAPWCPACQQLQP-EWE--EFADWSDDLGINVAKVDVTQEPGLSGRF--------FVTALPTI 75 (101)
T ss_pred hhHHHHh-CCC-EEEEEECCCCHHHHHHhH-HHH--HHHHhhccCCeEEEEEEccCCHhHHHHc--------CCcccCEE
Confidence 3444443 344 789999999999999986 465 55555543 5888999999888876665 78999999
Q ss_pred EEECCCCce
Q 003940 208 VFLSPDLKP 216 (784)
Q Consensus 208 vfl~pdg~p 216 (784)
+|+ ++|++
T Consensus 76 ~~~-~~g~~ 83 (101)
T cd02994 76 YHA-KDGVF 83 (101)
T ss_pred EEe-CCCCE
Confidence 987 77874
No 74
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.31 E-value=8.1e-07 Score=84.17 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=51.0
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc---c--cEEEEEcCCCCccHHHHH---------------HHH
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---W--FVSIKVDREERPDVDKVY---------------MTY 194 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~---~--FV~VkvD~ee~pdi~~~y---------------~~~ 194 (784)
.-.||+|+|.|+++||+.|+.+... ++ ++.+.+.+ + +|.|.+|.++ .+..+.+ ...
T Consensus 15 ~~~gk~vll~Fwa~wC~~C~~~~p~-l~--~~~~~~~~~~~~~~vv~is~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T cd03009 15 SLEGKTVGLYFSASWCPPCRAFTPK-LV--EFYEKLKESGKNFEIVFISWDRDE-ESFNDYFSKMPWLAVPFSDRERRSR 90 (131)
T ss_pred HhCCcEEEEEEECCCChHHHHHhHH-HH--HHHHHHHhcCCCEEEEEEECCCCH-HHHHHHHHcCCeeEcccCCHHHHHH
Confidence 3468999999999999999997542 21 22333322 3 4555555442 2211111 011
Q ss_pred HHHhcCCCCCCcEEEECCCCceecc
Q 003940 195 VQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
....+|+.++|++++++++|+++..
T Consensus 91 ~~~~~~v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 91 LNRTFKIEGIPTLIILDADGEVVTT 115 (131)
T ss_pred HHHHcCCCCCCEEEEECCCCCEEcc
Confidence 2223588999999999999998865
No 75
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.31 E-value=1.6e-06 Score=82.02 Aligned_cols=71 Identities=23% Similarity=0.171 Sum_probs=49.8
Q ss_pred cCCcEEEEEcc-------cCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCc---cHHHHHHHHHHHhcCCC-CCC
Q 003940 137 RDVPIFLSIGY-------STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP---DVDKVYMTYVQALYGGG-GWP 205 (784)
Q Consensus 137 e~KpI~l~~~~-------~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~p---di~~~y~~~~q~~~g~~-G~P 205 (784)
++|||+|.|+| +||+.|+.|+. +++ ++++....+...++||+++.| +....+. ...++. +.|
T Consensus 20 ~~~~vvV~F~A~~~~~~~~WC~pCr~~~P-~l~--~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~----~~~~I~~~iP 92 (119)
T cd02952 20 EGKPIFILFYGDKDPDGQSWCPDCVKAEP-VVR--EALKAAPEDCVFIYCDVGDRPYWRDPNNPFR----TDPKLTTGVP 92 (119)
T ss_pred CCCeEEEEEEccCCCCCCCCCHhHHhhch-hHH--HHHHHCCCCCEEEEEEcCCcccccCcchhhH----hccCcccCCC
Confidence 47999999999 99999999986 333 455556546788999998754 1111121 112676 999
Q ss_pred cEEEECCCC
Q 003940 206 LSVFLSPDL 214 (784)
Q Consensus 206 ~~vfl~pdg 214 (784)
|++++...+
T Consensus 93 T~~~~~~~~ 101 (119)
T cd02952 93 TLLRWKTPQ 101 (119)
T ss_pred EEEEEcCCc
Confidence 999995443
No 76
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.24 E-value=3.5e-06 Score=82.47 Aligned_cols=83 Identities=18% Similarity=0.277 Sum_probs=54.2
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc--------ccEEEEEcCCCCccHHHHHH-------------
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--------WFVSIKVDREERPDVDKVYM------------- 192 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~--------~FV~VkvD~ee~pdi~~~y~------------- 192 (784)
+.=.||+|+|.|+|+||+.|+..-. .+. ++.+.+++ .|..|-|+.++.+...+.|.
T Consensus 21 s~~kgk~vlL~FwAsWCppCr~e~P-~L~--~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~ 97 (146)
T cd03008 21 ARLENRVLLLFFGAVVSPQCQLFAP-KLK--DFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFE 97 (146)
T ss_pred HHhCCCEEEEEEECCCChhHHHHHH-HHH--HHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeeccc
Confidence 3446899999999999999998543 221 22222332 47777777665433211221
Q ss_pred ----HHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 193 ----TYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 193 ----~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
..+...+++.|.|+++++|++|+++..
T Consensus 98 ~~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 98 DEFRRELEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred chHHHHHHHHcCCCCCCEEEEECCCCcEEee
Confidence 112233578899999999999999875
No 77
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.21 E-value=2.8e-06 Score=79.91 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=55.6
Q ss_pred HHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcc-cEEEEEcCCCCccHHHHHHHH---------------
Q 003940 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTY--------------- 194 (784)
Q Consensus 131 l~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~-FV~VkvD~ee~pdi~~~y~~~--------------- 194 (784)
+..+.-.+||++|.|+++||+.|+.+.. .+.++-++. +..|-|+.++.++-.+.|++.
T Consensus 18 ~~~~~~~gk~vvv~F~a~~C~~C~~~~~------~l~~l~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 91 (127)
T cd03010 18 LTSADLKGKPYLLNVWASWCAPCREEHP------VLMALARQGRVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGR 91 (127)
T ss_pred ccHHHcCCCEEEEEEEcCcCHHHHHHHH------HHHHHHHhcCcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcch
Confidence 4444445999999999999999998764 333333332 555555543332222222110
Q ss_pred HHHhcCCCCCCcEEEECCCCceeccc-cccCC
Q 003940 195 VQALYGGGGWPLSVFLSPDLKPLMGG-TYFPP 225 (784)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdg~pi~~~-tY~p~ 225 (784)
.....++.++|+++|++++|+++... +.++.
T Consensus 92 ~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~ 123 (127)
T cd03010 92 VGIDLGVYGVPETFLIDGDGIIRYKHVGPLTP 123 (127)
T ss_pred HHHhcCCCCCCeEEEECCCceEEEEEeccCCh
Confidence 11124788999999999999988763 45553
No 78
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.20 E-value=4e-06 Score=78.36 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=54.7
Q ss_pred HHHHHHH-hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc---ccEEEEEcCCC--CccHHHHHHHHHHHhcCC
Q 003940 128 EEAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREE--RPDVDKVYMTYVQALYGG 201 (784)
Q Consensus 128 ~eal~~A-k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~---~FV~VkvD~ee--~pdi~~~y~~~~q~~~g~ 201 (784)
++.+++. +..+|||+|.|+++||+.|+.|.. +|+ ++++.+.+ .+...+||.+. .+++.+.| ++
T Consensus 8 ~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~-~~~--~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~--------~i 76 (114)
T cd02992 8 AASFNSALLGSPSAWLVEFYASWCGHCRAFAP-TWK--KLARDLRKWRPVVRVAAVDCADEENVALCRDF--------GV 76 (114)
T ss_pred HHhHHHHHhcCCCeEEEEEECCCCHHHHHHhH-HHH--HHHHHHHhcCCceEEEEEeccchhhHHHHHhC--------CC
Confidence 3344444 455689999999999999999976 565 57777753 25567788643 34444433 88
Q ss_pred CCCCcEEEECCCCc
Q 003940 202 GGWPLSVFLSPDLK 215 (784)
Q Consensus 202 ~G~P~~vfl~pdg~ 215 (784)
.++|+++|+.++.+
T Consensus 77 ~~~Pt~~lf~~~~~ 90 (114)
T cd02992 77 TGYPTLRYFPPFSK 90 (114)
T ss_pred CCCCEEEEECCCCc
Confidence 99999999976653
No 79
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.15 E-value=4.1e-06 Score=78.22 Aligned_cols=86 Identities=13% Similarity=0.097 Sum_probs=66.8
Q ss_pred ccccchHHHHHHHhhcCCcEEEEEcccC--ChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhc
Q 003940 122 DWFAWGEEAFAEARKRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY 199 (784)
Q Consensus 122 ~W~~~~~eal~~Ak~e~KpI~l~~~~~w--C~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~ 199 (784)
+|-.-.+.-|++--+.+.+++|.|+++| |+.|+.|+. .|. ++++.+......++||.++.|.+...|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P-~le--ela~e~~~~v~f~kVdid~~~~la~~f-------- 79 (111)
T cd02965 11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAV-VLP--ELLKAFPGRFRAAVVGRADEQALAARF-------- 79 (111)
T ss_pred CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHh-HHH--HHHHHCCCcEEEEEEECCCCHHHHHHc--------
Confidence 3444344445544478899999999997 999999985 443 677777656678899999999988877
Q ss_pred CCCCCCcEEEECCCCceecc
Q 003940 200 GGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 200 g~~G~P~~vfl~pdg~pi~~ 219 (784)
++.|+||.+|+ .+|+++..
T Consensus 80 ~V~sIPTli~f-kdGk~v~~ 98 (111)
T cd02965 80 GVLRTPALLFF-RDGRYVGV 98 (111)
T ss_pred CCCcCCEEEEE-ECCEEEEE
Confidence 89999999988 47888865
No 80
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.14 E-value=5e-06 Score=77.26 Aligned_cols=68 Identities=9% Similarity=0.053 Sum_probs=52.8
Q ss_pred CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi 217 (784)
++||+|.|+++||+.|+.|.. +|+ ++++... +...++||.++. ++.+.| ++.++|+.+++ .+|+++
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~-~l~--~la~~~~-~v~f~~vd~~~~-~l~~~~--------~i~~~Pt~~~f-~~G~~v 89 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDS-HLE--ELAAKYP-ETKFVKINAEKA-FLVNYL--------DIKVLPTLLVY-KNGELI 89 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHH-HHH--HHHHHCC-CcEEEEEEchhh-HHHHhc--------CCCcCCEEEEE-ECCEEE
Confidence 499999999999999999975 443 5555553 456689999876 665554 88999999888 568887
Q ss_pred cc
Q 003940 218 MG 219 (784)
Q Consensus 218 ~~ 219 (784)
..
T Consensus 90 ~~ 91 (113)
T cd02957 90 DN 91 (113)
T ss_pred EE
Confidence 65
No 81
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.14 E-value=7.7e-06 Score=72.87 Aligned_cols=76 Identities=25% Similarity=0.255 Sum_probs=46.9
Q ss_pred CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh--cccEEEEEcCCCC-ccHHHHH----------------HHHHHHh
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREER-PDVDKVY----------------MTYVQAL 198 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln--~~FV~VkvD~ee~-pdi~~~y----------------~~~~q~~ 198 (784)
||+++|+|+++||..|+..-. .+. ++.+.++ +++..|-|..++. .+..+.+ ...+...
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~-~l~--~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 77 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELP-KLK--ELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKK 77 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHH-HHH--HHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHH
T ss_pred CCEEEEEEECCCCHHHHHHHH-HHH--HHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHH
Confidence 799999999999999998654 222 4566666 4544444444332 1211111 1223334
Q ss_pred cCCCCCCcEEEECCCCce
Q 003940 199 YGGGGWPLSVFLSPDLKP 216 (784)
Q Consensus 199 ~g~~G~P~~vfl~pdg~p 216 (784)
+++.++|++++++++|++
T Consensus 78 ~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 78 YGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp TT-TSSSEEEEEETTSBE
T ss_pred CCCCcCCEEEEECCCCCC
Confidence 588999999999999974
No 82
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.13 E-value=3.2e-06 Score=97.95 Aligned_cols=96 Identities=17% Similarity=0.153 Sum_probs=56.6
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh-cc--cEEEEEcC---CCCc-cHHHHH---------------HHH
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DW--FVSIKVDR---EERP-DVDKVY---------------MTY 194 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln-~~--FV~VkvD~---ee~p-di~~~y---------------~~~ 194 (784)
++|||+|+|+++||++|+.+..+. + ++.+..+ +. +|.|.++. ++.. ++.+.+ ...
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L-~--eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGET-E--KWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHH-H--HHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 689999999999999999976422 1 2444333 22 34444321 1111 111100 111
Q ss_pred HHHhcCCCCCCcEEEECCCCceecc-ccccCCCCCCCcchHHHHHHHHH
Q 003940 195 VQALYGGGGWPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdg~pi~~-~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
. ...++.|+|+++|++++|+++.. .++++.+ .+.++|+...
T Consensus 132 a-k~fgV~giPTt~IIDkdGkIV~~~~G~~~~e------eL~a~Ie~~~ 173 (521)
T PRK14018 132 A-QSLNISVYPSWAIIGKDGDVQRIVKGSISEA------QALALIRNPN 173 (521)
T ss_pred H-HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHH------HHHHHHHHhh
Confidence 2 22488999999999999999876 3556543 4555555433
No 83
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.13 E-value=2.8e-06 Score=79.23 Aligned_cols=88 Identities=17% Similarity=0.177 Sum_probs=51.5
Q ss_pred HHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHH--------------HHH
Q 003940 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVY--------------MTY 194 (784)
Q Consensus 130 al~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y--------------~~~ 194 (784)
.+..+...+|+++|.|+++||..|+.+.. .+.++.++ .++.|.+|.+....+.+.. ...
T Consensus 12 ~~~~~~~~~k~~vl~F~~~~C~~C~~~~~------~l~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 85 (123)
T cd03011 12 QFDLESLSGKPVLVYFWATWCPVCRFTSP------TVNQLAADYPVVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVI 85 (123)
T ss_pred EeeHHHhCCCEEEEEEECCcChhhhhhCh------HHHHHHhhCCEEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHH
Confidence 34455556799999999999999999853 22222221 2444444433111111100 011
Q ss_pred HHHhcCCCCCCcEEEECCCCceeccc-cccCC
Q 003940 195 VQALYGGGGWPLSVFLSPDLKPLMGG-TYFPP 225 (784)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdg~pi~~~-tY~p~ 225 (784)
. ...++.++|+++|++++| +.... ++.++
T Consensus 86 ~-~~~~i~~~P~~~vid~~g-i~~~~~g~~~~ 115 (123)
T cd03011 86 S-ARWGVSVTPAIVIVDPGG-IVFVTTGVTSE 115 (123)
T ss_pred H-HhCCCCcccEEEEEcCCC-eEEEEeccCCH
Confidence 1 123889999999999998 66543 45554
No 84
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=98.13 E-value=0.00033 Score=82.10 Aligned_cols=272 Identities=18% Similarity=0.207 Sum_probs=154.4
Q ss_pred hhccccCCCCCCC-CCCC--C---hhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCCeEEE-Eec
Q 003940 294 KSYDSRFGGFGSA-PKFP--R---PVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHR-YSV 366 (784)
Q Consensus 294 ~~~D~~~GGfg~a-PKFP--~---p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~R-Ysv 366 (784)
..+.+.+|||.+. |.++ - ...|.-+.+.+..++ +++.++.+...++.+.. -.+ ..||.. |..
T Consensus 39 ~~~~~~~g~we~~~~~~~~~~~~~g~wl~a~a~~~~~~~-------D~~l~~~~d~~V~~l~~--~Q~--~dGYl~~~~~ 107 (520)
T PF07944_consen 39 PNFAIAYGGWEGEFPGWWFRGHDVGKWLEAAAYAYAYTG-------DPELKAKADEIVDELAA--AQQ--PDGYLGTYPE 107 (520)
T ss_pred CCccccCCCCccCCCCCccCCCcHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHH--hcc--CCceeccccc
Confidence 3445567887622 2222 1 234444444444432 46777777777777755 222 444443 222
Q ss_pred ------CCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeecccCCCccccccccc
Q 003940 367 ------DERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRK 440 (784)
Q Consensus 367 ------D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfysa~DADS~~~~~~~~~ 440 (784)
+..|.. ---.+|...-|+.+..++|+.||++..+++|.+.++|+.+.+.. | +.+.
T Consensus 108 ~~~~~~~~~w~~--~~he~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~----~----~~~~--------- 168 (520)
T PF07944_consen 108 ERNFNPDDRWAP--DMHELYCLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSR----L----GPEP--------- 168 (520)
T ss_pred ccccccccCCCC--CccceehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhcc----C----CHHH---------
Confidence 234544 23348999999999999999999999999999999999543311 0 0000
Q ss_pred cCCceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHH
Q 003940 441 KEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGE 520 (784)
Q Consensus 441 ~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~ 520 (784)
++...
T Consensus 169 -------------------------------------------------~~~~~-------------------------- 173 (520)
T PF07944_consen 169 -------------------------------------------------GQKMG-------------------------- 173 (520)
T ss_pred -------------------------------------------------hhccc--------------------------
Confidence 00000
Q ss_pred HHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC
Q 003940 521 CRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ 600 (784)
Q Consensus 521 ~r~kL~~~R~~R~~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~ 600 (784)
.+.+ +-|..+|+++|+++|| ++||+.|+...+ ...+++.
T Consensus 174 ---------------------~~~~-~~i~~~l~~LY~~Tgd----------------~~yL~lA~~f~~---~~~~~~~ 212 (520)
T PF07944_consen 174 ---------------------YPEH-GGINEALVRLYEITGD----------------ERYLDLAEYFVD---QRGFDPY 212 (520)
T ss_pred ---------------------cccc-chHHHHHHHHHHHhCC----------------HHHHHHHHHHHH---HhCCCCC
Confidence 0001 3445889999999998 899999977664 3344430
Q ss_pred CCeEEEEecCCCCC-----CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccc
Q 003940 601 THRLQHSFRNGPSK-----APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVL 675 (784)
Q Consensus 601 ~G~l~~~~~dg~~~-----~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~ 675 (784)
+..+. .+..+. ..+..--.+++..|..++|++|||++|++.++.+++.+.++-. --+||.-... ..|...
T Consensus 213 -~~~~~--~d~~~~~~a~~~~~h~vr~~y~~~g~a~~y~~tgd~~~~~a~~~~w~~v~~~~~-y~tGg~g~~~-~~E~f~ 287 (520)
T PF07944_consen 213 -DLAYG--QDHLPGRHANTHIGHAVRAMYLYSGAADLYEETGDEEYLDAAENFWDNVVRHHM-YATGGIGSDH-EGEHFG 287 (520)
T ss_pred -chhhc--CccCCCccccceeeEEEEhhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHhcCe-eccCCCcCCC-CCccCC
Confidence 00000 111111 1122223467889999999999999999999999998876521 1234433220 001111
Q ss_pred cccccCCC--CCCCChhHH-HHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 003940 676 LRVKEDHD--GAEPSGNSV-SVINLVRLASIVAGSKSDYYRQNAEHSL 720 (784)
Q Consensus 676 ~R~k~~~D--~a~PS~Nsv-~a~~L~rL~~lt~~~~~~~y~e~A~~~l 720 (784)
.......+ ..+ +-+++ +..-..+|..++|+ ..|.+..|+++
T Consensus 288 ~~~~lp~~~~~~E-tCas~~~~~~~~~L~~~tgd---~~yaD~~Er~l 331 (520)
T PF07944_consen 288 PPYDLPNRLAYAE-TCASVNMMKLARRLFRLTGD---ARYADYYERAL 331 (520)
T ss_pred CCCCCCcCCCCcc-ccHHHHHHHHHHHHHhcCCC---chHHHHHHHHH
Confidence 00000101 122 22233 44445588888886 78999888754
No 85
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.12 E-value=9e-06 Score=74.73 Aligned_cols=80 Identities=16% Similarity=0.263 Sum_probs=51.0
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHH-------------HHHHHhcCCCC
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM-------------TYVQALYGGGG 203 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~-------------~~~q~~~g~~G 203 (784)
++||++|.|+++||+.|+.+... ++ ++.+.....+..|.+- +..++-.+.+. ......+++.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~-l~--~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 95 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPV-IR--SIARAEADWLDVVLAS-DGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSK 95 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHH-HH--HHHHHhcCCcEEEEEe-CCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCC
Confidence 58999999999999999997643 33 3444444444444441 22222111111 11223357889
Q ss_pred CCcEEEECCCCceeccc
Q 003940 204 WPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 204 ~P~~vfl~pdg~pi~~~ 220 (784)
+|+++++|++|++++.+
T Consensus 96 ~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 96 LPYAVLLDEAGVIAAKG 112 (114)
T ss_pred cCeEEEECCCCeEEecc
Confidence 99999999999988754
No 86
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.11 E-value=7.2e-06 Score=78.10 Aligned_cols=86 Identities=17% Similarity=0.217 Sum_probs=53.9
Q ss_pred HHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc---ccEEEEEcCCCCccHHHHHH---------------
Q 003940 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYM--------------- 192 (784)
Q Consensus 131 l~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~---~FV~VkvD~ee~pdi~~~y~--------------- 192 (784)
+..+.-.||+|+|.|+++||+.|+.+.. .++ ++.+.+.+ ++..|-|+.++.++--+.|+
T Consensus 10 v~l~~~~Gk~vll~F~atwC~~C~~~~p-~l~--~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~ 86 (132)
T cd02964 10 VPVSALEGKTVGLYFSASWCPPCRAFTP-KLV--EFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEE 86 (132)
T ss_pred ccHHHhCCCEEEEEEECCCCchHHHHHH-HHH--HHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHH
Confidence 3344456899999999999999998653 222 23333433 34455555544332111111
Q ss_pred --HHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 193 --TYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 193 --~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
......+++.|+|++++++++|+++..
T Consensus 87 ~~~~~~~~~~v~~iPt~~lid~~G~iv~~ 115 (132)
T cd02964 87 LRELLEKQFKVEGIPTLVVLKPDGDVVTT 115 (132)
T ss_pred HHHHHHHHcCCCCCCEEEEECCCCCEEch
Confidence 112233588999999999999998865
No 87
>PTZ00102 disulphide isomerase; Provisional
Probab=98.11 E-value=3.6e-06 Score=96.56 Aligned_cols=77 Identities=17% Similarity=0.314 Sum_probs=59.3
Q ss_pred HHHHHH-hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh--cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003940 129 EAFAEA-RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 129 eal~~A-k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln--~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P 205 (784)
+.+.+. .+++|+|||.|+++||++|+.|+. +|+ ++++.+. .+++.+++|.+..+...+.| ++.|+|
T Consensus 365 ~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p-~~~--~~a~~~~~~~~v~~~~id~~~~~~~~~~~--------~v~~~P 433 (477)
T PTZ00102 365 NTFEEIVFKSDKDVLLEIYAPWCGHCKNLEP-VYN--ELGEKYKDNDSIIVAKMNGTANETPLEEF--------SWSAFP 433 (477)
T ss_pred cchHHHHhcCCCCEEEEEECCCCHHHHHHHH-HHH--HHHHHhccCCcEEEEEEECCCCccchhcC--------CCcccC
Confidence 445444 688999999999999999999976 565 4555553 35888999998776654444 788999
Q ss_pred cEEEECCCCce
Q 003940 206 LSVFLSPDLKP 216 (784)
Q Consensus 206 ~~vfl~pdg~p 216 (784)
+.+|+.++++.
T Consensus 434 t~~~~~~~~~~ 444 (477)
T PTZ00102 434 TILFVKAGERT 444 (477)
T ss_pred eEEEEECCCcc
Confidence 99999987763
No 88
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.09 E-value=4.5e-06 Score=74.84 Aligned_cols=87 Identities=17% Similarity=0.265 Sum_probs=55.2
Q ss_pred HHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCC-ccHHHHHHHH-------------
Q 003940 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREER-PDVDKVYMTY------------- 194 (784)
Q Consensus 130 al~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~-pdi~~~y~~~------------- 194 (784)
.+..++..+|+++|.|++.||..|+.+.. .+. ++.+.+. .++..+.|+.+.. ++..+.+.+.
T Consensus 11 ~~~~~~~~~k~~ll~f~~~~C~~C~~~~~-~l~--~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (116)
T cd02966 11 PVSLSDLKGKVVLVNFWASWCPPCRAEMP-ELE--ALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDG 87 (116)
T ss_pred EeehHHcCCCEEEEEeecccChhHHHHhH-HHH--HHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcc
Confidence 34455556999999999999999997643 222 2333332 2455666666543 3332222111
Q ss_pred -HHHhcCCCCCCcEEEECCCCceecc
Q 003940 195 -VQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 195 -~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
.....++.++|.++++||+|++++.
T Consensus 88 ~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 88 ELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred hHHHhcCcCccceEEEECCCCcEEEE
Confidence 1223477799999999999998764
No 89
>PTZ00102 disulphide isomerase; Provisional
Probab=98.08 E-value=6.1e-06 Score=94.69 Aligned_cols=77 Identities=19% Similarity=0.332 Sum_probs=61.9
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh---cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln---~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~ 204 (784)
.+.+..+.++++++||.|+++||+.|+.|..+. . ++++.++ .+++.++||.++.+++.+.| ++.|+
T Consensus 39 ~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~-~--~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~--------~i~~~ 107 (477)
T PTZ00102 39 DSTFDKFITENEIVLVKFYAPWCGHCKRLAPEY-K--KAAKMLKEKKSEIVLASVDATEEMELAQEF--------GVRGY 107 (477)
T ss_pred hhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHH-H--HHHHHHHhcCCcEEEEEEECCCCHHHHHhc--------CCCcc
Confidence 556777778899999999999999999998753 3 4555554 35899999999888877666 88999
Q ss_pred CcEEEECCCCc
Q 003940 205 PLSVFLSPDLK 215 (784)
Q Consensus 205 P~~vfl~pdg~ 215 (784)
|+++++..++.
T Consensus 108 Pt~~~~~~g~~ 118 (477)
T PTZ00102 108 PTIKFFNKGNP 118 (477)
T ss_pred cEEEEEECCce
Confidence 99999986544
No 90
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.06 E-value=7.8e-06 Score=92.83 Aligned_cols=77 Identities=22% Similarity=0.318 Sum_probs=61.1
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc---ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~---~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~ 204 (784)
++.+..+-+++|++||.|+++||+.|+.|..+. .++++.++. ++..++||.++.+++.+.| ++.|+
T Consensus 8 ~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~---~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~i~~~ 76 (462)
T TIGR01130 8 KDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEY---EKAADELKKKGPPIKLAKVDATEEKDLAQKY--------GVSGY 76 (462)
T ss_pred HHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHH---HHHHHHHhhcCCceEEEEEECCCcHHHHHhC--------CCccc
Confidence 456777778899999999999999999998643 356666653 3889999999888776655 88999
Q ss_pred CcEEEECCCCce
Q 003940 205 PLSVFLSPDLKP 216 (784)
Q Consensus 205 P~~vfl~pdg~p 216 (784)
|+.+++. +|+.
T Consensus 77 Pt~~~~~-~g~~ 87 (462)
T TIGR01130 77 PTLKIFR-NGED 87 (462)
T ss_pred cEEEEEe-CCcc
Confidence 9998885 4444
No 91
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=98.03 E-value=0.0006 Score=74.27 Aligned_cols=273 Identities=17% Similarity=0.152 Sum_probs=167.6
Q ss_pred HHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCC
Q 003940 292 LSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWH 371 (784)
Q Consensus 292 l~~~~D~~~GGfg~aPKFP~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~ 371 (784)
+.++++...|=....=-+|+-..|.=+.+.+.-++ +++.++.+....+.... .|||-+|.+|.-
T Consensus 19 ~~~~~~~r~~~~~~~Wdwe~GV~lyGv~~~~eAT~-------d~~yl~~l~~~~d~~i~-------~~g~~~~~id~i-- 82 (357)
T COG4225 19 MIDRIIARTGPTKDRWDWEQGVFLYGVARAYEATG-------DAEYLDYLKTWFDEQID-------EGGLPPRNIDHI-- 82 (357)
T ss_pred HHHHHHHhhCCCCccccccccchHHHHHHHHHHcC-------cHHHHHHHHHHHHhhhc-------cCCCCccchhhh--
Confidence 33334433332223344666666666667666543 36677766555543321 244555555532
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeecccCCCccccccccccCCceEEechH
Q 003940 372 VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSK 451 (784)
Q Consensus 372 vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~ 451 (784)
..-.++.-.|+.|++|.|+..|.+..+|+..+++-.+|||.+-
T Consensus 83 ------------~~g~~L~~L~e~T~~~~Yl~~a~~~a~~l~~~~Rt~eG~f~H~------------------------- 125 (357)
T COG4225 83 ------------AAGLTLLPLYEQTGDPRYLEAAIKLASWLVHEPRTKEGGFQHK------------------------- 125 (357)
T ss_pred ------------ccCceeeehhhhhCCHHHHHHHHHHHHHHhhCcccCCCccccc-------------------------
Confidence 2223456678899999999999999999999997777888551
Q ss_pred HHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcC
Q 003940 452 EVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSK 531 (784)
Q Consensus 452 Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~ 531 (784)
.++ .+ .+
T Consensus 126 ---------------------~~~-------------p~-----------------Q~---------------------- 132 (357)
T COG4225 126 ---------------------VKY-------------PH-----------------QM---------------------- 132 (357)
T ss_pred ---------------------cCc-------------hh-----------------Hh----------------------
Confidence 001 00 00
Q ss_pred CCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-
Q 003940 532 RPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN- 610 (784)
Q Consensus 532 R~~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~d- 610 (784)
-+|.- -|...-+++.++++++ ++|++.+..-..-..+++.||++|.+||-|..
T Consensus 133 ----W~DtL------~Ma~~F~ak~g~~~~~----------------~e~~d~~~~QF~~~~~~l~Dp~TGL~YH~wd~~ 186 (357)
T COG4225 133 ----WLDTL------YMAGLFLAKYGQVTGR----------------PEYFDEALYQFSLHEKYLRDPETGLYYHGWDED 186 (357)
T ss_pred ----hhcch------hhhhHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHHccCCCcCceEEeeccC
Confidence 01211 3446678889999998 89999999988888999999999999998743
Q ss_pred CCC----CC---CCCcc-hHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHHHHhccccCCCcccccCCCCCccccc
Q 003940 611 GPS----KA---PGFLD-DYAFLISGLLDLYEFGSGTK-----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLR 677 (784)
Q Consensus 611 g~~----~~---~~~le-DyA~li~aLL~LYeaTgd~~-----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R 677 (784)
|+- .. +.++. ..++++.++.++.+.-.+.. +.+.-..+.+.+.. +-| ++|-|+..- +++ |
T Consensus 187 ~~~~w~~~~sG~~~fWaRg~gW~~mal~d~le~lp~~~~~r~~l~~~l~d~v~al~r-~Qd-e~GlW~tiL-Dd~----~ 259 (357)
T COG4225 187 GTMPWANNESGEPAFWARGNGWYAMALADLLELLPEDHPDRRELLNVLRDLVDALIR-YQD-ESGLWHTIL-DDG----R 259 (357)
T ss_pred CCCccccccCCCceeeecccchHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHH-hhc-cccchhhhh-ccC----C
Confidence 311 11 12222 45777778888877665432 33333344444333 335 566555432 221 0
Q ss_pred cccCCCCCCCChhHHHHHHHHH---HHHHhCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 003940 678 VKEDHDGAEPSGNSVSVINLVR---LASIVAGSKSDYYRQNAEHSLAVFETRLKDMA 731 (784)
Q Consensus 678 ~k~~~D~a~PS~Nsv~a~~L~r---L~~lt~~~~~~~y~e~A~~~l~~~~~~l~~~p 731 (784)
..--.+-|+.+..|-+|++ ++-+. ++|...+++.++++.+.+....
T Consensus 260 ---~~sy~EsSaSa~faYallkgi~~G~l~-----~~~~~~~~kA~~aLl~~i~~~g 308 (357)
T COG4225 260 ---PGSYLESSASAGFAYALLKGINLGILD-----PEYAPVAEKALDALLGHIDEEG 308 (357)
T ss_pred ---CCCchhhhHHHHHHHHHHHHHhcCCCC-----chhhHHHHHHHHHHHhhccccc
Confidence 1123445888888888887 66553 4677888888888877776543
No 92
>PHA02125 thioredoxin-like protein
Probab=98.02 E-value=1.2e-05 Score=69.45 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=47.0
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecccc
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGT 221 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~~t 221 (784)
++.|+++||++|+.|+.. |+ + + .|..++||.++.+++.+.| ++.++||++ +|+.+....
T Consensus 2 iv~f~a~wC~~Ck~~~~~-l~--~----~--~~~~~~vd~~~~~~l~~~~--------~v~~~PT~~----~g~~~~~~~ 60 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPM-LA--N----V--EYTYVDVDTDEGVELTAKH--------HIRSLPTLV----NTSTLDRFT 60 (75)
T ss_pred EEEEECCCCHhHHHHHHH-HH--H----H--hheEEeeeCCCCHHHHHHc--------CCceeCeEE----CCEEEEEEe
Confidence 678999999999999763 32 1 2 2678899999888887766 889999987 577664432
Q ss_pred ccCCC
Q 003940 222 YFPPE 226 (784)
Q Consensus 222 Y~p~~ 226 (784)
.+|++
T Consensus 61 G~~~~ 65 (75)
T PHA02125 61 GVPRN 65 (75)
T ss_pred CCCCc
Confidence 23543
No 93
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.00 E-value=1.2e-05 Score=69.51 Aligned_cols=61 Identities=23% Similarity=0.239 Sum_probs=46.2
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~p 216 (784)
+.-|+++||++|+.|.. .++ ++++..+..+-.++||.++.+++.+.| |+.+.|+.++ +|+.
T Consensus 3 v~~f~~~~C~~C~~~~~-~l~--~l~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~vPt~~~---~g~~ 63 (82)
T TIGR00411 3 IELFTSPTCPYCPAAKR-VVE--EVAKEMGDAVEVEYINVMENPQKAMEY--------GIMAVPAIVI---NGDV 63 (82)
T ss_pred EEEEECCCCcchHHHHH-HHH--HHHHHhcCceEEEEEeCccCHHHHHHc--------CCccCCEEEE---CCEE
Confidence 45688999999999986 333 445555556778899999888876655 8889999986 6664
No 94
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.96 E-value=2.2e-05 Score=79.21 Aligned_cols=68 Identities=10% Similarity=0.067 Sum_probs=51.9
Q ss_pred CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi 217 (784)
+++|+|+|+++||+.|+.|.. .|. ++++... +...+|||+++. ++...| ++.++||++|+- +|+++
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~-~l~--~LA~~~~-~vkF~kVd~d~~-~l~~~f--------~v~~vPTlllyk-~G~~v 148 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNS-SLL--CLAAEYP-AVKFCKIRASAT-GASDEF--------DTDALPALLVYK-GGELI 148 (175)
T ss_pred CcEEEEEEECCCCchHHHHHH-HHH--HHHHHCC-CeEEEEEeccch-hhHHhC--------CCCCCCEEEEEE-CCEEE
Confidence 359999999999999999986 333 4555443 577889999865 555554 888999999884 68887
Q ss_pred cc
Q 003940 218 MG 219 (784)
Q Consensus 218 ~~ 219 (784)
..
T Consensus 149 ~~ 150 (175)
T cd02987 149 GN 150 (175)
T ss_pred EE
Confidence 54
No 95
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.92 E-value=2.6e-05 Score=77.02 Aligned_cols=81 Identities=11% Similarity=0.160 Sum_probs=46.3
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHH---HHHHHHhc---CCCCCCcEE
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY---MTYVQALY---GGGGWPLSV 208 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y---~~~~q~~~---g~~G~P~~v 208 (784)
...+++.+|.|+++||+.|+.+.. .++ ++++..+-.++.|.+|....+.....+ .......+ ++.+.|+++
T Consensus 47 ~~l~~~~lvnFWAsWCppCr~e~P-~L~--~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~ 123 (153)
T TIGR02738 47 ANQDDYALVFFYQSTCPYCHQFAP-VLK--RFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATF 123 (153)
T ss_pred hhcCCCEEEEEECCCChhHHHHHH-HHH--HHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEE
Confidence 344667799999999999998743 222 233332223555555543211111001 11111222 567999999
Q ss_pred EECCCCceec
Q 003940 209 FLSPDLKPLM 218 (784)
Q Consensus 209 fl~pdg~pi~ 218 (784)
++|++|+.+.
T Consensus 124 LID~~G~~i~ 133 (153)
T TIGR02738 124 LVNVNTRKAY 133 (153)
T ss_pred EEeCCCCEEE
Confidence 9999988654
No 96
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.92 E-value=2.5e-05 Score=89.59 Aligned_cols=69 Identities=16% Similarity=0.301 Sum_probs=52.4
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcc-cEEEEEcCCCCc-cH-HHHHHHHHHHhcCCCCCCcEEEEC
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERP-DV-DKVYMTYVQALYGGGGWPLSVFLS 211 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~-FV~VkvD~ee~p-di-~~~y~~~~q~~~g~~G~P~~vfl~ 211 (784)
++.+|||||.|+++||+.|+.|+.. | +++++.+... ...++||.+..+ .+ .+.| ++.++||++|+.
T Consensus 368 ~~~~k~VLV~FyApWC~~Ck~m~P~-~--eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~--------~I~~~PTii~Fk 436 (463)
T TIGR00424 368 EERKEAWLVVLYAPWCPFCQAMEAS-Y--LELAEKLAGSGVKVAKFRADGDQKEFAKQEL--------QLGSFPTILFFP 436 (463)
T ss_pred hcCCCeEEEEEECCCChHHHHHHHH-H--HHHHHHhccCCcEEEEEECCCCccHHHHHHc--------CCCccceEEEEE
Confidence 5689999999999999999999874 5 5788877643 667777777543 22 2233 788999999997
Q ss_pred CCC
Q 003940 212 PDL 214 (784)
Q Consensus 212 pdg 214 (784)
.+.
T Consensus 437 ~g~ 439 (463)
T TIGR00424 437 KHS 439 (463)
T ss_pred CCC
Confidence 653
No 97
>PLN02309 5'-adenylylsulfate reductase
Probab=97.90 E-value=1.8e-05 Score=90.55 Aligned_cols=72 Identities=19% Similarity=0.356 Sum_probs=55.6
Q ss_pred HHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003940 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (784)
Q Consensus 133 ~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~e-e~pdi~~~y~~~~q~~~g~~G~P~~vfl 210 (784)
+.++++|++||.|+++||+.|+.|+. .|. ++++.++. ++..++||.+ +..++.+. ..++.++||++|+
T Consensus 360 ~~~~~~k~vlV~FyApWC~~Cq~m~p-~~e--~LA~~~~~~~V~f~kVD~d~~~~~la~~-------~~~I~~~PTil~f 429 (457)
T PLN02309 360 KLENRKEPWLVVLYAPWCPFCQAMEA-SYE--ELAEKLAGSGVKVAKFRADGDQKEFAKQ-------ELQLGSFPTILLF 429 (457)
T ss_pred HhhcCCCeEEEEEECCCChHHHHHHH-HHH--HHHHHhccCCeEEEEEECCCcchHHHHh-------hCCCceeeEEEEE
Confidence 34578999999999999999999986 455 77887764 5999999998 54444321 1288899999999
Q ss_pred CCCC
Q 003940 211 SPDL 214 (784)
Q Consensus 211 ~pdg 214 (784)
.+..
T Consensus 430 ~~g~ 433 (457)
T PLN02309 430 PKNS 433 (457)
T ss_pred eCCC
Confidence 6543
No 98
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=97.88 E-value=4.6e-05 Score=75.28 Aligned_cols=84 Identities=18% Similarity=0.174 Sum_probs=51.5
Q ss_pred HHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHH--------------HHHH
Q 003940 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT--------------YVQA 197 (784)
Q Consensus 133 ~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~--------------~~q~ 197 (784)
.+.-++|+++|.|+++||+.|+.... .|. ++++.+++ ++..|-|+.++.++..+.|.+ ....
T Consensus 56 l~~~~~k~~~l~f~a~~C~~C~~~~~-~l~--~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 132 (173)
T PRK03147 56 LKDLKGKGVFLNFWGTWCKPCEKEMP-YMN--ELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVID 132 (173)
T ss_pred HHHcCCCEEEEEEECCcCHHHHHHHH-HHH--HHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHH
Confidence 33346899999999999999987542 332 34444433 344455554433221111111 1112
Q ss_pred hcCCCCCCcEEEECCCCceecc
Q 003940 198 LYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 198 ~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
.+|+.++|++++++++|+++..
T Consensus 133 ~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 133 AYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred HcCCCCcCeEEEECCCCcEEEE
Confidence 2488999999999999999854
No 99
>PF07470 Glyco_hydro_88: Glycosyl Hydrolase Family 88; InterPro: IPR010905 Unsaturated glucuronyl hydrolase catalyses the hydrolytic release of unsaturated glucuronic acids from oligosaccharides produced by the reactions of polysaccharide lyases [].; PDB: 3K11_A 2GH4_A 2D8L_A 1NC5_A 3PMM_A 2FV1_B 2AHF_A 2FV0_A 2AHG_B 2D5J_A ....
Probab=97.85 E-value=0.0011 Score=73.10 Aligned_cols=146 Identities=14% Similarity=0.087 Sum_probs=96.8
Q ss_pred HHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHH-HHHHHHHH
Q 003940 554 ARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAF-LISGLLDL 632 (784)
Q Consensus 554 a~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~-li~aLL~L 632 (784)
+.+++.+++ ++|++.+.++++++......+..|++.+ ......-.+-|-.+ .+.-|+.+
T Consensus 77 ~~~y~~t~d----------------~~y~~~~~~~a~~~l~~~~~~~~G~~~~----~~~~~~~~wiD~~~M~~p~l~~~ 136 (336)
T PF07470_consen 77 LDLYERTGD----------------EKYKDAAIQAADWLLARRPRTSDGGFWH----NRPYPNQVWIDGMYMNLPFLAWA 136 (336)
T ss_dssp HHHHHHH-T----------------HHHHHHHHHHHHHHHHTSCBECTGCBEC----TTTSTTEEETTHHHHHHHHHHHH
T ss_pred HHHHHHhCC----------------HHHHHHHHHHHHHHHHhCCCCCCCcccc----CCCCCCceeeccccccHHHHHHH
Confidence 447888887 8999999999999888877655688876 11122233455554 77788889
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCC---CChhHHHHHHHHHHHHHhCCCCc
Q 003940 633 YEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAE---PSGNSVSVINLVRLASIVAGSKS 709 (784)
Q Consensus 633 YeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~---PS~Nsv~a~~L~rL~~lt~~~~~ 709 (784)
++.|||++|++.|.+-+....++.+|+++|-|+.....+. ..+.+. --||+=++..|.++.+.+..+
T Consensus 137 ~~~tgd~~~~~~a~~q~~~~~~~~~d~~tGl~~h~~~~~~--------~~~~s~~~WsRG~gW~~~Gl~~~l~~lp~~-- 206 (336)
T PF07470_consen 137 GKLTGDPKYLDEAVRQFRLTRKYLYDPETGLYYHGYTYQG--------YADWSDSFWSRGNGWAIYGLAEVLEYLPED-- 206 (336)
T ss_dssp HHHHTGHHHHHHHHHHHHHHHHHHB-TTTSSBESEEETTS--------SSTTST--BHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHCCcHHHHHHHHHHHHHHHhccCCCCCceeeccCCCC--------CcCcccccCcchhhHHHHHHHHHHHHhcch--
Confidence 9999999999999999999999999999887765322111 001111 125666888888888888541
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 003940 710 DYYRQNAEHSLAVFETRLKD 729 (784)
Q Consensus 710 ~~y~e~A~~~l~~~~~~l~~ 729 (784)
...++...++++.+...+.+
T Consensus 207 ~~~~~~~~~~~~~~~~~l~~ 226 (336)
T PF07470_consen 207 HPERDELLEIAKKLADALAR 226 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHHHh
Confidence 23344444444444444444
No 100
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.83 E-value=3.4e-05 Score=69.54 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=55.9
Q ss_pred CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCC--CCCcEEEECCC
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG--GWPLSVFLSPD 213 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~--G~P~~vfl~pd 213 (784)
++|++|.|+++||..|+.|.. .|+ +|++.+...+..++||.++.+++.+.| |+. ++|+.++++.+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~-~~~--~vA~~~~~~v~f~~vd~~~~~~~~~~~--------~i~~~~~P~~~~~~~~ 78 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRE-RFK--EVAKKFKGKLLFVVVDADDFGRHLEYF--------GLKEEDLPVIAIINLS 78 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHH-HHH--HHHHHhCCeEEEEEEchHhhHHHHHHc--------CCChhhCCEEEEEecc
Confidence 799999999999999999975 454 888888878999999999888776655 777 99999999884
No 101
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.76 E-value=7.3e-05 Score=80.49 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=48.2
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCc---cHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERP---DVDKVYMTYVQALYGGGGWPLSVFLS 211 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~p---di~~~y~~~~q~~~g~~G~P~~vfl~ 211 (784)
.-.+|+++|.|+++||+.|+.|.. +++ ++++..+-.++.|.+|.+..+ .++. -....+ ..|+.++|+++|++
T Consensus 163 ~l~~k~~Lv~F~AswCp~C~~~~P-~L~--~la~~yg~~Vi~VsvD~~~~~~fp~~~~-d~~la~-~~gV~~vPtl~Lv~ 237 (271)
T TIGR02740 163 DLAKKSGLFFFFKSDCPYCHQQAP-ILQ--AFEDRYGIEVLPVSVDGGPLPGFPNARP-DAGQAQ-QLKIRTVPAVFLAD 237 (271)
T ss_pred HhcCCeEEEEEECCCCccHHHHhH-HHH--HHHHHcCcEEEEEeCCCCccccCCcccC-CHHHHH-HcCCCcCCeEEEEE
Confidence 345899999999999999999764 222 344433323555666654322 1110 011112 23899999999999
Q ss_pred CCCcee
Q 003940 212 PDLKPL 217 (784)
Q Consensus 212 pdg~pi 217 (784)
++|+.+
T Consensus 238 ~~~~~v 243 (271)
T TIGR02740 238 PDPNQF 243 (271)
T ss_pred CCCCEE
Confidence 965544
No 102
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=2e-05 Score=81.95 Aligned_cols=72 Identities=19% Similarity=0.205 Sum_probs=55.4
Q ss_pred HHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003940 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (784)
Q Consensus 133 ~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~p 212 (784)
.++.-+|.|+|+|+++||+.|+.... .|++ .+... ..+|.+|||+++-......+ |+...||++|+-.
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP-~Fs~--lankY-p~aVFlkVdVd~c~~taa~~--------gV~amPTFiff~n 83 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAP-IFSD--LANKY-PGAVFLKVDVDECRGTAATN--------GVNAMPTFIFFRN 83 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhh-HHHH--hhhhC-cccEEEEEeHHHhhchhhhc--------CcccCceEEEEec
Confidence 45667899999999999999999874 5552 23223 36999999999877776655 8999999999954
Q ss_pred CCcee
Q 003940 213 DLKPL 217 (784)
Q Consensus 213 dg~pi 217 (784)
|.-+
T Consensus 84 -g~ki 87 (288)
T KOG0908|consen 84 -GVKI 87 (288)
T ss_pred -CeEe
Confidence 4433
No 103
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.74 E-value=0.0001 Score=74.84 Aligned_cols=97 Identities=7% Similarity=0.011 Sum_probs=66.8
Q ss_pred CCCcccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEE------EEEcCCCCccHHHHH
Q 003940 118 HNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVS------IKVDREERPDVDKVY 191 (784)
Q Consensus 118 ~~~v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~------VkvD~ee~pdi~~~y 191 (784)
.+.++.++|..+.+. ||..+|.|.|+||..|+. +.|-+.++=.++|.. +-||.++.+.....|
T Consensus 44 ~~~~~y~~~~~~~l~-----GKV~lvn~~Aswc~~c~~------e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~f 112 (184)
T TIGR01626 44 GKDTVYQPWGSAELA-----GKVRVVHHIAGRTSAKEX------NASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMF 112 (184)
T ss_pred CCcccceeccHHHcC-----CCEEEEEEEecCCChhhc------cchHHHHHHHcCCCcccccceEEEECccchhhHHHH
Confidence 367888888666654 999999999999999987 345555554457777 777777654332222
Q ss_pred HH---------------------HHHHhcCCCCCCcE-EEECCCCceeccc-cccCC
Q 003940 192 MT---------------------YVQALYGGGGWPLS-VFLSPDLKPLMGG-TYFPP 225 (784)
Q Consensus 192 ~~---------------------~~q~~~g~~G~P~~-vfl~pdg~pi~~~-tY~p~ 225 (784)
.+ .....+|..|.|.+ +|+|++|++.+.. +++++
T Consensus 113 Vk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ 169 (184)
T TIGR01626 113 VKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSD 169 (184)
T ss_pred HHHHHHHhcccCCcceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCH
Confidence 11 12223578899888 7999999998763 45553
No 104
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=97.72 E-value=4.2e-05 Score=66.35 Aligned_cols=65 Identities=18% Similarity=0.088 Sum_probs=45.1
Q ss_pred EEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccc
Q 003940 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTY 222 (784)
Q Consensus 143 l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~~tY 222 (784)
|.|+++||++|+.|.. .++ ++++.++..+..++|| .++....| |+.+.|++++ ||+.++.| .
T Consensus 3 i~~~a~~C~~C~~~~~-~~~--~~~~e~~~~~~~~~v~---~~~~a~~~--------~v~~vPti~i---~G~~~~~G-~ 64 (76)
T TIGR00412 3 IQIYGTGCANCQMTEK-NVK--KAVEELGIDAEFEKVT---DMNEILEA--------GVTATPGVAV---DGELVIMG-K 64 (76)
T ss_pred EEEECCCCcCHHHHHH-HHH--HHHHHcCCCeEEEEeC---CHHHHHHc--------CCCcCCEEEE---CCEEEEEe-c
Confidence 6889999999999975 332 5666666567778887 23322222 8889999998 88888433 3
Q ss_pred cCC
Q 003940 223 FPP 225 (784)
Q Consensus 223 ~p~ 225 (784)
.|.
T Consensus 65 ~~~ 67 (76)
T TIGR00412 65 IPS 67 (76)
T ss_pred cCC
Confidence 453
No 105
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.71 E-value=9.9e-05 Score=76.54 Aligned_cols=77 Identities=21% Similarity=0.316 Sum_probs=55.9
Q ss_pred HHHHHHHhhcCCcEEEE-EcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAFAEARKRDVPIFLS-IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~-~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
++..+..++.++||.|. |+++||++|+.|.. .++ +++.. +.+...+++|.++.|++.+.| |+.+.|+
T Consensus 122 ~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~-~l~--~l~~~-~~~i~~~~vD~~~~~~~~~~~--------~V~~vPt 189 (215)
T TIGR02187 122 EKTVELLQSLDEPVRIEVFVTPTCPYCPYAVL-MAH--KFALA-NDKILGEMIEANENPDLAEKY--------GVMSVPK 189 (215)
T ss_pred HHHHHHHHhcCCCcEEEEEECCCCCCcHHHHH-HHH--HHHHh-cCceEEEEEeCCCCHHHHHHh--------CCccCCE
Confidence 44466666778897777 89999999999873 222 33332 345666789999999888776 8889999
Q ss_pred EEEECCCCcee
Q 003940 207 SVFLSPDLKPL 217 (784)
Q Consensus 207 ~vfl~pdg~pi 217 (784)
++|. .+|+.+
T Consensus 190 l~i~-~~~~~~ 199 (215)
T TIGR02187 190 IVIN-KGVEEF 199 (215)
T ss_pred EEEe-cCCEEE
Confidence 9986 456543
No 106
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=97.69 E-value=8.4e-05 Score=70.11 Aligned_cols=87 Identities=17% Similarity=0.161 Sum_probs=53.6
Q ss_pred HHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCC-----CCccHHHHHHHH---------
Q 003940 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE-----ERPDVDKVYMTY--------- 194 (784)
Q Consensus 130 al~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~e-----e~pdi~~~y~~~--------- 194 (784)
.+..+.-.+|+|+|.|+++||+.|...-. .++ ++.+.+. +++..|-|..+ ..++..+.|.+.
T Consensus 15 ~v~l~~~~gk~vvl~F~a~~C~~C~~~~p-~l~--~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 91 (126)
T cd03012 15 PLSLAQLRGKVVLLDFWTYCCINCLHTLP-YLT--DLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVAN 91 (126)
T ss_pred ccCHHHhCCCEEEEEEECCCCccHHHHHH-HHH--HHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEE
Confidence 34455557899999999999999997543 121 3444443 24555555432 223222222211
Q ss_pred -----HHHhcCCCCCCcEEEECCCCceecc
Q 003940 195 -----VQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 195 -----~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+...+++.++|+++++|++|++++.
T Consensus 92 D~~~~~~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 92 DNDYATWRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred CCchHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence 1122477899999999999998865
No 107
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.66 E-value=9e-05 Score=61.93 Aligned_cols=63 Identities=24% Similarity=0.251 Sum_probs=44.9
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
++.|+++||++|+.|+. .++ ++++ .+.++...++|.++.+++.+.| |+.+.|+.++ +|+.++.
T Consensus 3 v~~f~~~~C~~C~~~~~-~l~--~l~~-~~~~i~~~~id~~~~~~l~~~~--------~i~~vPti~i---~~~~~~~ 65 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQ-AAN--RIAA-LNPNISAEMIDAAEFPDLADEY--------GVMSVPAIVI---NGKVEFV 65 (67)
T ss_pred EEEEECCCCCCcHHHHH-HHH--HHHH-hCCceEEEEEEcccCHhHHHHc--------CCcccCEEEE---CCEEEEe
Confidence 45689999999999975 332 4433 2345777888998888776655 8889999876 4566654
No 108
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.64 E-value=0.00016 Score=73.52 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=49.7
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHH-------------HHHHhcCCC
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT-------------YVQALYGGG 202 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~-------------~~q~~~g~~ 202 (784)
..+||++|.|+++||+.|+.+... ++ ++.+..+.+++.|..| . ++-.+.|++ .....+++.
T Consensus 72 ~~gk~vvl~F~atwCp~C~~~lp~-l~--~~~~~~~~~vv~Is~~--~-~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~ 145 (189)
T TIGR02661 72 APGRPTLLMFTAPSCPVCDKLFPI-IK--SIARAEETDVVMISDG--T-PAEHRRFLKDHELGGERYVVSAEIGMAFQVG 145 (189)
T ss_pred cCCCEEEEEEECCCChhHHHHHHH-HH--HHHHhcCCcEEEEeCC--C-HHHHHHHHHhcCCCcceeechhHHHHhccCC
Confidence 368999999999999999987542 22 2333333356666533 1 221122211 111234788
Q ss_pred CCCcEEEECCCCceecc
Q 003940 203 GWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 203 G~P~~vfl~pdg~pi~~ 219 (784)
+.|+.+++|++|+..+.
T Consensus 146 ~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 146 KIPYGVLLDQDGKIRAK 162 (189)
T ss_pred ccceEEEECCCCeEEEc
Confidence 99999999999999875
No 109
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=97.63 E-value=0.0017 Score=66.30 Aligned_cols=139 Identities=19% Similarity=0.273 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-C-----CC--CCCC
Q 003940 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-G-----PS--KAPG 617 (784)
Q Consensus 546 Nal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~d-g-----~~--~~~~ 617 (784)
+|.+|+.|++||.+++| ++|+++|.++.+...-.. +.||+...+.+ + =+ ...-
T Consensus 32 QG~a~s~l~RAy~~t~d----------------~~Yl~aA~~al~~f~~~~---~~GG~~~~~~~~~~wyeEYp~~p~s~ 92 (189)
T PF06662_consen 32 QGQAISVLARAYQLTGD----------------EKYLDAAKKALNSFKVPV---EEGGVLATFKNKYPWYEEYPTTPPSY 92 (189)
T ss_pred HHHHHHHHHHHHHhHCC----------------HHHHHHHHHHHHHhcChH---hhCCeeEEecCCcEeEeecCCCCCCE
Confidence 47789999999999998 899999999998875433 23555544433 1 11 2235
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCC-----Ch
Q 003940 618 FLDDYAFLISGLLDLYEFGSGTKWLV---WAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEP-----SG 689 (784)
Q Consensus 618 ~leDyA~li~aLL~LYeaTgd~~yL~---~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~P-----S~ 689 (784)
.++++.+.+.||-+++..+++++..+ ...+.++.+...| |...+-+|+-. . ...+..| .=
T Consensus 93 VLNGfiysL~GLyd~~~~~~~~~A~~lf~~Gl~sLk~~Lp~y-D~G~wS~Ydl~---------h--~~~~~~~~~a~~~Y 160 (189)
T PF06662_consen 93 VLNGFIYSLIGLYDYYRLTGDEEAKELFDKGLKSLKKMLPLY-DTGSWSRYDLR---------H--FTLGNAPNIARWDY 160 (189)
T ss_pred EeehHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhh-hcCCCchhhcc---------c--cccccCcCcCcchH
Confidence 78899999999999999999987654 4444444455444 65444566521 0 0011222 22
Q ss_pred hHHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 003940 690 NSVSVINLVRLASIVAGSKSDYYRQNAEH 718 (784)
Q Consensus 690 Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~ 718 (784)
-.+.+..|..|+.++++ +.+.+.|++
T Consensus 161 H~lHi~qL~~L~~it~d---~~f~~~a~r 186 (189)
T PF06662_consen 161 HRLHIQQLKWLYSITGD---PIFKEYAER 186 (189)
T ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHH
Confidence 24677778899999985 778887764
No 110
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=97.62 E-value=0.0098 Score=64.47 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=102.9
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCCCCcc
Q 003940 542 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPGFLD 620 (784)
Q Consensus 542 itsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~~~~~~le 620 (784)
++.+-| ++.+|..+++.+++ +.+.+.+.++++++.+......++ ..+. .........++..
T Consensus 98 ~~G~aG-~~~~ll~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~g~~H 159 (343)
T cd04434 98 LSGLAG-LLLALLLLYKTFGE----------------EIFLELIRKILDYLLELGKNGDGK-IRWPMYFPEGRVNLGLAH 159 (343)
T ss_pred eechHH-HHHHHHHHHHhcCC----------------cCHHHHHHHHHHHHHHhhhhccCC-CceeeeccCCccccchhh
Confidence 333333 45677788887765 678999999999998876543332 2221 1111223457888
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHH
Q 003940 621 DYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL 700 (784)
Q Consensus 621 DyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL 700 (784)
+.+=.+.+|+.+++.+.++.+.+.++.+.......+ +..++.|+...... .......--.|.+=++..++++
T Consensus 160 G~~Gi~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------~~~~~~~wChG~~Gi~~~l~~~ 231 (343)
T cd04434 160 GLAGILLALLLLYKKTVDKSLEALIKALLKYERRLQ-DDSGGFWWPSRSNG-------GNRFLVAWCHGAPGILLALLLA 231 (343)
T ss_pred hhHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHcc-CCCCCCCCCCCCCC-------CccccceecCCChhHHHHHHHH
Confidence 888899999999999988888888888887766655 44444443311110 1111223345666678888999
Q ss_pred HHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 003940 701 ASIVAGSKSDYYRQNAEHSLAVFETRLK 728 (784)
Q Consensus 701 ~~lt~~~~~~~y~e~A~~~l~~~~~~l~ 728 (784)
+..+++ +.+.+.+++++........
T Consensus 232 ~~~~~~---~~~~~~~~~~~~~~~~~~~ 256 (343)
T cd04434 232 YKALGD---DKYDEAAEKALELAWKRGL 256 (343)
T ss_pred HHHcCc---HHHHHHHHHHHHHHHHhhh
Confidence 999885 6788888888877655554
No 111
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=97.60 E-value=0.0051 Score=75.98 Aligned_cols=253 Identities=19% Similarity=0.272 Sum_probs=151.0
Q ss_pred ecCCCCCCCCCchhHHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC-----CCceeecccCCCccccccc
Q 003940 365 SVDERWHVPHFEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP-----GGEIFSAEDADSAETEGAT 438 (784)
Q Consensus 365 svD~~W~vPHFEKMLyD-NA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~-----~Ggfysa~DADS~~~~~~~ 438 (784)
..+..|.+-.-.=.||+ -|-++.+|+..+++++++.|.+.|+++++.+...+... +-|+|+
T Consensus 475 ~~~~~~~~~~~~~~LY~G~aGIal~l~~l~~~t~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~gl~~------------- 541 (825)
T cd04792 475 SDGDEWELSPLGNDLYDGSAGIALFLAYLGQLTGDERYTRLARKILDSLVKSLSELKTDDTGIGAFS------------- 541 (825)
T ss_pred cCCCcEEEecCCCcccCChHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhcccccccCceeEe-------------
Confidence 34456765446667888 89999999999999999999999999999988766431 222332
Q ss_pred cccCCceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHH
Q 003940 439 RKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNIL 518 (784)
Q Consensus 439 ~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l 518 (784)
|..|-.| ....+.+.+++ +++.+.+
T Consensus 542 -G~aGi~~--~L~~l~~~~~~----------------------------------------------------~~~~~~a 566 (825)
T cd04792 542 -GLGGILY--ALTHLGKLLKD----------------------------------------------------DRLLNLA 566 (825)
T ss_pred -chhHHHH--HHHHHHHHcCC----------------------------------------------------HHHHHHH
Confidence 1222211 11111111110 1111222
Q ss_pred HHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccc
Q 003940 519 GECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYD 598 (784)
Q Consensus 519 ~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d 598 (784)
..+.+.+.+.-. ..... -++.++-| ++.+|+.+++.+++ +.+++.|+++++++.+....
T Consensus 567 ~~~~~~l~~~~~--~~~~~--D~~~G~aG-ii~~Ll~l~~~~~~----------------~~~l~~a~~~~~~l~~~~~~ 625 (825)
T cd04792 567 KEILDLIDELIE--KDEKL--DFISGAAG-LILVLLSLYELFLS----------------ERFLDLALKCGDHLLENASN 625 (825)
T ss_pred HHHHHHHHHhhc--cccCC--CEeeecHH-HHHHHHHHHhccCC----------------hHHHHHHHHHHHHHHHhhhh
Confidence 222222221111 11111 23343434 46677888988877 78999999999999876543
Q ss_pred cCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCcccccc
Q 003940 599 EQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRV 678 (784)
Q Consensus 599 ~~~G~l~~~~~dg~~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~ 678 (784)
.+.+ .. ..+.....++..+.+=.+.+|+.+|++|+|++|++.|.++.+.....+ ++..+.|. ..+ .
T Consensus 626 ~~~~-~~---~~~~~~~~G~aHG~sGi~~aL~~l~~~~~d~~~~~~a~~~l~~~~~~~-~~~~~~w~--~~~-~------ 691 (825)
T cd04792 626 EDGG-IG---PAEQPNLTGFAHGASGIAWALLRLYKVTGDSRYLKLAHKALKYERRLF-SEEGWNWP--RKD-G------ 691 (825)
T ss_pred ccCC-cc---cccccccccccccHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHhc-CHhhcCCC--CcC-c------
Confidence 2222 22 122234458888889899999999999999999999999998766555 33333443 110 0
Q ss_pred ccCCCCCCCChhHHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHHHH
Q 003940 679 KEDHDGAEPSGNSVSVINLVRLASI--VAGSKSDYYRQNAEHSLAVFE 724 (784)
Q Consensus 679 k~~~D~a~PS~Nsv~a~~L~rL~~l--t~~~~~~~y~e~A~~~l~~~~ 724 (784)
......--.|.+=.+..+++++.+ .. ++.+.+.+++++....
T Consensus 692 -~~~~~~WChG~~GI~lal~~~~~~~~~~---d~~~~~~i~~~~~~~~ 735 (825)
T cd04792 692 -NSFSAAWCHGAPGILLARLELLKFNDLD---DEELKEEIEIALKTTL 735 (825)
T ss_pred -CCCCCcccCCcHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHHHH
Confidence 000011223444466677788887 34 2667777777666543
No 112
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.58 E-value=0.00011 Score=92.43 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=59.9
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEc-----CCCCc-cHHHHH--------------HHHH
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVD-----REERP-DVDKVY--------------MTYV 195 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD-----~ee~p-di~~~y--------------~~~~ 195 (784)
.||+|+|+|+++||+.|+.+.. .+ .++.+..++ +|+.|-|. .++.+ ++.+.. .+..
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P-~L--~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~ 495 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLP-DL--EFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLW 495 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhH-HH--HHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHH
Confidence 5999999999999999997543 22 244444433 36666653 22211 111111 0111
Q ss_pred HHhcCCCCCCcEEEECCCCceeccc-cccCCCCCCCcchHHHHHHHHHHHHhh
Q 003940 196 QALYGGGGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVKDAWDK 247 (784)
Q Consensus 196 q~~~g~~G~P~~vfl~pdg~pi~~~-tY~p~~~~~~~~~f~~~L~~i~~~~~~ 247 (784)
..+++.|+|+++|++++|+++... +... .+.+.++++.+...|.+
T Consensus 496 -~~~~V~~iPt~ilid~~G~iv~~~~G~~~------~~~l~~~l~~~l~~~~~ 541 (1057)
T PLN02919 496 -RELGVSSWPTFAVVSPNGKLIAQLSGEGH------RKDLDDLVEAALQYYGE 541 (1057)
T ss_pred -HhcCCCccceEEEECCCCeEEEEEecccC------HHHHHHHHHHHHHhhcc
Confidence 224889999999999999988652 1111 23456666666555543
No 113
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.58 E-value=0.00016 Score=64.95 Aligned_cols=74 Identities=19% Similarity=0.117 Sum_probs=55.8
Q ss_pred HHHhhcCCcEEEE-EcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003940 132 AEARKRDVPIFLS-IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (784)
Q Consensus 132 ~~Ak~e~KpI~l~-~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl 210 (784)
+++++-++||=|. |+++||+||..+..- + .++++. +.++-..++|+++.|++.+.| |+.+.|++++
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~-~--~~l~~~-~~~i~~~~vd~~~~~e~a~~~--------~V~~vPt~vi- 71 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQA-L--NLMAVL-NPNIEHEMIDGALFQDEVEER--------GIMSVPAIFL- 71 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHH-H--HHHHHH-CCCceEEEEEhHhCHHHHHHc--------CCccCCEEEE-
Confidence 4455678886555 778999999998753 3 566653 446888888998888888777 8889999986
Q ss_pred CCCCceeccc
Q 003940 211 SPDLKPLMGG 220 (784)
Q Consensus 211 ~pdg~pi~~~ 220 (784)
||+.++.|
T Consensus 72 --dG~~~~~G 79 (89)
T cd03026 72 --NGELFGFG 79 (89)
T ss_pred --CCEEEEeC
Confidence 78877653
No 114
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=97.49 E-value=0.00017 Score=74.71 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=51.1
Q ss_pred hcCCcEEEEEc--ccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003940 136 KRDVPIFLSIG--YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (784)
Q Consensus 136 ~e~KpI~l~~~--~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~p 212 (784)
+.++.|++.+. ++||++|+.|.. +++ ++++...+ .+..|++|.++.+++.+.| ++.+.||.+|+.
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p-~l~--~la~~~~~~~i~~v~vd~~~~~~l~~~~--------~V~~~Pt~~~f~- 85 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQ-LLE--ELSEVSPKLKLEIYDFDTPEDKEEAEKY--------GVERVPTTIILE- 85 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHH-HHH--HHHhhCCCceEEEEecCCcccHHHHHHc--------CCCccCEEEEEe-
Confidence 34566555434 499999999986 443 56555543 3667888888899988877 899999999986
Q ss_pred CCcee
Q 003940 213 DLKPL 217 (784)
Q Consensus 213 dg~pi 217 (784)
+|+.+
T Consensus 86 ~g~~~ 90 (215)
T TIGR02187 86 EGKDG 90 (215)
T ss_pred CCeee
Confidence 46654
No 115
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=97.45 E-value=0.02 Score=64.38 Aligned_cols=142 Identities=8% Similarity=-0.062 Sum_probs=97.1
Q ss_pred HHHHHHHHHHh-hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-----------cCCCCCCCC
Q 003940 550 ISSFARASKIL-KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-----------RNGPSKAPG 617 (784)
Q Consensus 550 I~ALa~a~~~~-~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~-----------~dg~~~~~~ 617 (784)
+++|+.+++.. ++ +.+++.++++.+|+..++.+...+..+... ..+.....+
T Consensus 178 ~~~L~~~~~~~~~~----------------~~~~~~i~~~l~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 241 (382)
T cd04793 178 LALLALAKERGIRV----------------DGQLEAIQKIIAWLDRWRLKNRKGPWWPGLITNREQIGGRPNNPNPFRDA 241 (382)
T ss_pred HHHHHHHHHcCCCc----------------CChHHHHHHHHHHHHHHHHhCCCCCCCcccccHHHHhccccccCCCCCCC
Confidence 67888888865 44 679999999999998877554333221110 011112345
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHH
Q 003940 618 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 697 (784)
Q Consensus 618 ~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L 697 (784)
+..+-+=.+.+++.++++++|+.+.+.|.++.+....... ..+ ...+...--|.+=.+..|
T Consensus 242 wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~-----------------~~~~~~lChG~~G~~~~l 302 (382)
T cd04793 242 WCYGTPGIARALQLAGKALDDQKLQEAAEKILKAALKDKK--QLS-----------------KLISPTLCHGLAGLLFIF 302 (382)
T ss_pred CCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhChh--hhc-----------------cCCCCCcCccHHHHHHHH
Confidence 6666777888999999999999999999998876554321 000 001222345566677889
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHHHHH
Q 003940 698 VRLASIVAGSKSDYYRQNAEHSLAVFETRLKD 729 (784)
Q Consensus 698 ~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~ 729 (784)
++++..+++ +++.+.|+++++.......+
T Consensus 303 ~~~~~~~~~---~~~~~~a~~~~~~~l~~~~~ 331 (382)
T cd04793 303 YLLYKDTNT---NEFKSALEYLLNQIISSYSE 331 (382)
T ss_pred HHHHHHhCC---cHHHHHHHHHHHHHHHHhcc
Confidence 999999986 68999999998887776654
No 116
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.43 E-value=0.00025 Score=80.57 Aligned_cols=68 Identities=19% Similarity=0.297 Sum_probs=53.6
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc---ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~---~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~ 211 (784)
...+|+|||.|+++||+.|+.|.. .| .++++.++. .+..+++|.+... +.. | ++.++|+.+|+.
T Consensus 361 ~~~~~~vlv~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~--------~i~~~Pt~~~~~ 427 (462)
T TIGR01130 361 LDETKDVLVEFYAPWCGHCKNLAP-IY--EELAEKYKDAESDVVIAKMDATAND-VPP-F--------EVEGFPTIKFVP 427 (462)
T ss_pred ccCCCeEEEEEECCCCHhHHHHHH-HH--HHHHHHhhcCCCcEEEEEEECCCCc-cCC-C--------CccccCEEEEEe
Confidence 467999999999999999999976 34 467888876 6889999998653 222 3 678999999997
Q ss_pred CCCc
Q 003940 212 PDLK 215 (784)
Q Consensus 212 pdg~ 215 (784)
.+++
T Consensus 428 ~~~~ 431 (462)
T TIGR01130 428 AGKK 431 (462)
T ss_pred CCCC
Confidence 6554
No 117
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.42 E-value=0.00042 Score=66.68 Aligned_cols=84 Identities=15% Similarity=0.183 Sum_probs=53.0
Q ss_pred HHhhcCCcEEEEEccc-CChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHH--------------HHH
Q 003940 133 EARKRDVPIFLSIGYS-TCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------YVQ 196 (784)
Q Consensus 133 ~Ak~e~KpI~l~~~~~-wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~--------------~~q 196 (784)
.+.-.||+++|.|+++ ||+.|+..-. . =.++.+... +++..|-|..+..+.+.+...+ ..+
T Consensus 23 l~~~~gk~~vv~f~~~~~Cp~C~~~~p-~--l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 99 (146)
T PF08534_consen 23 LSDFKGKPVVVNFWASAWCPPCRKELP-Y--LNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAK 99 (146)
T ss_dssp GGGGTTSEEEEEEESTTTSHHHHHHHH-H--HHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHH
T ss_pred HHHhCCCeEEEEEEccCCCCcchhhhh-h--HHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHH
Confidence 3445799999999999 9999997553 2 224444433 3344444444444443322211 122
Q ss_pred HhcCCC---------CCCcEEEECCCCceeccc
Q 003940 197 ALYGGG---------GWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 197 ~~~g~~---------G~P~~vfl~pdg~pi~~~ 220 (784)
. ++.. ++|++++++++|++++..
T Consensus 100 ~-~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 100 A-LGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp H-TTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred H-hCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 2 3555 999999999999999874
No 118
>PF07944 DUF1680: Putative glycosyl hydrolase of unknown function (DUF1680); InterPro: IPR012878 The members of this family are sequences derived from hypothetical bacterial and eukaryotic proteins of unknown function. One member of this family is annotated as a possible arabinosidase, but no references were found to back this.
Probab=97.40 E-value=0.0018 Score=76.02 Aligned_cols=136 Identities=19% Similarity=0.092 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC----CCCCCC---
Q 003940 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP----SKAPGF--- 618 (784)
Q Consensus 546 Nal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~----~~~~~~--- 618 (784)
-+-.++|++.++..++| +++.+.+.++.+.|.+.-.+ +| ++..+.... ...+.-
T Consensus 62 ~g~wl~a~a~~~~~~~D----------------~~l~~~~d~~V~~l~~~Q~~--dG-Yl~~~~~~~~~~~~~~w~~~~h 122 (520)
T PF07944_consen 62 VGKWLEAAAYAYAYTGD----------------PELKAKADEIVDELAAAQQP--DG-YLGTYPEERNFNPDDRWAPDMH 122 (520)
T ss_pred HHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHHHhccC--Cc-eecccccccccccccCCCCCcc
Confidence 37889999999999998 78999999999999887643 34 555543322 122333
Q ss_pred -cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--ccCCCcccccCCCCCccccccccCCCCCCCChhHHHHH
Q 003940 619 -LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL--DREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVI 695 (784)
Q Consensus 619 -leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~--D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~ 695 (784)
++....++.||++.|++||+++.|+.|.++.+.+.+..- +++.+. ..-.| +..-+..
T Consensus 123 e~Y~~~~ll~gl~~~y~~tG~~~~L~v~~k~ad~~~~~~~~~~~~~~~-------------------~~~~~-~~~~i~~ 182 (520)
T PF07944_consen 123 ELYCLGKLLEGLIDYYEATGNERALDVATKLADWVYRRLSRLGPEPGQ-------------------KMGYP-EHGGINE 182 (520)
T ss_pred ceehHhHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHhccCCHHHhh-------------------ccccc-ccchHHH
Confidence 556678999999999999999999999999999833321 111000 00011 2234558
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHH
Q 003940 696 NLVRLASIVAGSKSDYYRQNAEHSLAVF 723 (784)
Q Consensus 696 ~L~rL~~lt~~~~~~~y~e~A~~~l~~~ 723 (784)
.|.+||++||+ ++|++.|+..+...
T Consensus 183 ~l~~LY~~Tgd---~~yL~lA~~f~~~~ 207 (520)
T PF07944_consen 183 ALVRLYEITGD---ERYLDLAEYFVDQR 207 (520)
T ss_pred HHHHHHHHhCC---HHHHHHHHHHHHHh
Confidence 99999999996 89999998887754
No 119
>COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins [General function prediction only]
Probab=97.39 E-value=0.0038 Score=68.18 Aligned_cols=146 Identities=18% Similarity=0.201 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc
Q 003940 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 658 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D 658 (784)
++|++.|+++++++..+. ..+.|+|.|.... + ..-.++.--....-++.+.+.+++++|.+.+..-+....++.-|
T Consensus 98 ~~Yl~~a~~~a~~l~~~~-Rt~eG~f~H~~~~--p-~Q~W~DtL~Ma~~F~ak~g~~~~~~e~~d~~~~QF~~~~~~l~D 173 (357)
T COG4225 98 PRYLEAAIKLASWLVHEP-RTKEGGFQHKVKY--P-HQMWLDTLYMAGLFLAKYGQVTGRPEYFDEALYQFSLHEKYLRD 173 (357)
T ss_pred HHHHHHHHHHHHHHhhCc-ccCCCccccccCc--h-hHhhhcchhhhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHccC
Confidence 899999999999999888 4456889986431 1 11222333334445678899999999999999999999999999
Q ss_pred cCCCcccccCCCCCccccccccCCCCCCC----ChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhhhh
Q 003940 659 REGGGYFNTTGEDPSVLLRVKEDHDGAEP----SGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMA 733 (784)
Q Consensus 659 ~~~Ggyf~t~~~~~~l~~R~k~~~D~a~P----S~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~~p~~ 733 (784)
+++|-||-.=+++.+ .++....-|- | -+|+=.+.+|.++-.+...+ ..-+....++|......|.++...
T Consensus 174 p~TGL~YH~wd~~~~--~~w~~~~sG~-~~fWaRg~gW~~mal~d~le~lp~~--~~~r~~l~~~l~d~v~al~r~Qde 247 (357)
T COG4225 174 PETGLYYHGWDEDGT--MPWANNESGE-PAFWARGNGWYAMALADLLELLPED--HPDRRELLNVLRDLVDALIRYQDE 247 (357)
T ss_pred CCcCceEEeeccCCC--CccccccCCC-ceeeecccchHHHHHHHHHHhCCCC--CchHHHHHHHHHHHHHHHHHhhcc
Confidence 999988854333322 1112222221 3 35676788888777777653 223444445555555555554433
No 120
>PF06662 C5-epim_C: D-glucuronyl C5-epimerase C-terminus; InterPro: IPR010598 This entry consists of known or predicted D-glucuronyl C5-epimerases which share a common C-terminal region. Glucuronyl C5-epimerases catalyse the conversion of D-glucuronic acid (GlcUA) to L-iduronic acid (IdceA) units during the biosynthesis of glycosaminoglycans [].; GO: 0016857 racemase and epimerase activity, acting on carbohydrates and derivatives, 0006024 glycosaminoglycan biosynthetic process, 0016021 integral to membrane
Probab=97.27 E-value=0.0063 Score=62.17 Aligned_cols=45 Identities=24% Similarity=0.316 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003940 379 LYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (784)
Q Consensus 379 LyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfys 425 (784)
-..|++.+.++++||++|+|+.|+++|+++++..... ..+||+-+
T Consensus 29 amaQG~a~s~l~RAy~~t~d~~Yl~aA~~al~~f~~~--~~~GG~~~ 73 (189)
T PF06662_consen 29 AMAQGQAISVLARAYQLTGDEKYLDAAKKALNSFKVP--VEEGGVLA 73 (189)
T ss_pred HHHHHHHHHHHHHHHHhHCCHHHHHHHHHHHHHhcCh--HhhCCeeE
Confidence 3469999999999999999999999999999987653 34688765
No 121
>PTZ00062 glutaredoxin; Provisional
Probab=97.17 E-value=0.00094 Score=69.05 Aligned_cols=71 Identities=7% Similarity=-0.029 Sum_probs=52.8
Q ss_pred HHHHHHHhhcC-CcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAFAEARKRD-VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal~~Ak~e~-KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
.+.+++..+++ ..+++.|+++||+.|+.|.. ++. ++++-. .++..++||++ | ++.+.|+
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~-vl~--~l~~~~-~~~~F~~V~~d--------~--------~V~~vPt 65 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMD-VCN--ALVEDF-PSLEFYVVNLA--------D--------ANNEYGV 65 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHH-HHH--HHHHHC-CCcEEEEEccc--------c--------CcccceE
Confidence 44555555544 77899999999999999974 443 444433 36888899987 3 7889999
Q ss_pred EEEECCCCceecc
Q 003940 207 SVFLSPDLKPLMG 219 (784)
Q Consensus 207 ~vfl~pdg~pi~~ 219 (784)
++|+. +|+.+-.
T Consensus 66 fv~~~-~g~~i~r 77 (204)
T PTZ00062 66 FEFYQ-NSQLINS 77 (204)
T ss_pred EEEEE-CCEEEee
Confidence 99995 7888765
No 122
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.16 E-value=0.00088 Score=70.75 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=18.4
Q ss_pred hhcCCcEEEEEcccCChhhhh
Q 003940 135 RKRDVPIFLSIGYSTCHWCHV 155 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~ 155 (784)
.-.||+|+|.|+++||++|..
T Consensus 96 d~kGK~vvl~FwAswCp~c~~ 116 (236)
T PLN02399 96 KFKGKVLLIVNVASKCGLTSS 116 (236)
T ss_pred HhCCCeEEEEEEcCCCcchHH
Confidence 335899999999999999975
No 123
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.13 E-value=0.00079 Score=63.52 Aligned_cols=71 Identities=8% Similarity=0.035 Sum_probs=51.5
Q ss_pred HHHHHHHhhcCCcEEEEEcc--cCCh---hhhhhhhcccCCHHHHHHHhcccEEEEEcCC-----CCccHHHHHHHHHHH
Q 003940 128 EEAFAEARKRDVPIFLSIGY--STCH---WCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-----ERPDVDKVYMTYVQA 197 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~--~wC~---wC~~Me~etf~d~eVa~~ln~~FV~VkvD~e-----e~pdi~~~y~~~~q~ 197 (784)
+.-|+..-++++.|||.|++ +||. -|+.+..+..+.. ...+..|||.+ +..++.+.|
T Consensus 8 ~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa-------~~v~lakVd~~d~~~~~~~~L~~~y------ 74 (116)
T cd03007 8 TVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASAT-------DDLLVAEVGIKDYGEKLNMELGERY------ 74 (116)
T ss_pred hhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhc-------CceEEEEEecccccchhhHHHHHHh------
Confidence 45677788899999999999 7777 7777764333211 13778899994 445566665
Q ss_pred hcCCC--CCCcEEEECCC
Q 003940 198 LYGGG--GWPLSVFLSPD 213 (784)
Q Consensus 198 ~~g~~--G~P~~vfl~pd 213 (784)
|+. |+||+.|+...
T Consensus 75 --~I~~~gyPTl~lF~~g 90 (116)
T cd03007 75 --KLDKESYPVIYLFHGG 90 (116)
T ss_pred --CCCcCCCCEEEEEeCC
Confidence 888 99999888643
No 124
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.12 E-value=0.0043 Score=61.63 Aligned_cols=81 Identities=20% Similarity=0.273 Sum_probs=51.2
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh-cc--cEEEEEcCC-----CCccHHHHHHHH--------------
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DW--FVSIKVDRE-----ERPDVDKVYMTY-------------- 194 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln-~~--FV~VkvD~e-----e~pdi~~~y~~~-------------- 194 (784)
.+|+++|.|+++||+.|..+.. .+ .++.+.+. ++ ||.|.+|.. +.++..+.|.+.
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~-~l--~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~ 100 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIED-RL--NRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQE 100 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHH-HH--HHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchH
Confidence 6899999999999999986543 22 24444443 34 455555542 123322333211
Q ss_pred HHHhcCCCCCCcEEEECCCCceeccc
Q 003940 195 VQALYGGGGWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdg~pi~~~ 220 (784)
....+|+.++|.++++|++|++++.+
T Consensus 101 ~~~~~~v~~~P~~~lid~~G~v~~~~ 126 (171)
T cd02969 101 VAKAYGAACTPDFFLFDPDGKLVYRG 126 (171)
T ss_pred HHHHcCCCcCCcEEEECCCCeEEEee
Confidence 11234788999999999999998764
No 125
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.09 E-value=0.044 Score=62.64 Aligned_cols=174 Identities=20% Similarity=0.197 Sum_probs=122.7
Q ss_pred cHHHHHHHHHHHHHHHcCCCcccCC--CeEEEE-ecCCCCC---CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHH
Q 003940 334 ASEGQKMVLFTLQCMAKGGIHDHVG--GGFHRY-SVDERWH---VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRD 407 (784)
Q Consensus 334 ~~~~~~~~~~TL~~m~~GGi~D~v~--GGF~RY-svD~~W~---vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~ 407 (784)
++...+-+..+.+.+++ +.|..| ||+++- --+..|. .=|| ||--+-|+.....+|++||++..++++.+
T Consensus 84 dp~Lekr~D~vi~~~a~--~QdedGYl~~~~q~~~pe~Rw~nlr~~He---lY~aghLieg~va~~qaTGkr~lldV~~r 158 (589)
T COG3533 84 DPELEKRIDEVVEELAR--AQDEDGYLGGWFQADFPEERWGNLRPNHE---LYCAGHLIEGGVAAHQATGKRRLLDVVCR 158 (589)
T ss_pred CHHHHHHHHHHHHHHHH--hhccCCcccceeeccCchhhhhccccchH---HHHhHHHHhhhhHHHHhhCcchHHHHHHH
Confidence 46777778888888877 777765 666652 2355675 2344 99999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCceeecccCCCccccccccccCCceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCC
Q 003940 408 ILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNE 487 (784)
Q Consensus 408 t~~fl~~~m~~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~ 487 (784)
-.||+.+-+ .|+- +. ..|.+
T Consensus 159 lADhi~tvf-gp~~--------------~q----------------------------------~~g~~----------- 178 (589)
T COG3533 159 LADHIATVF-GPEE--------------DQ----------------------------------VPGYC----------- 178 (589)
T ss_pred HHHhhhhhc-Cccc--------------cc----------------------------------ccccc-----------
Confidence 999998744 2110 00 01111
Q ss_pred CCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhh
Q 003940 488 FKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESA 567 (784)
Q Consensus 488 f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~ 567 (784)
.++-+-.||++.|+++|+
T Consensus 179 ---------------------------------------------------------gH~eielAl~~Ly~~Tg~----- 196 (589)
T COG3533 179 ---------------------------------------------------------GHPEIELALAELYRLTGD----- 196 (589)
T ss_pred ---------------------------------------------------------CCCchhHHHHHHHHHhcC-----
Confidence 112344588999999998
Q ss_pred cccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 003940 568 MFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIE 647 (784)
Q Consensus 568 ~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~ 647 (784)
++||+.|+...+. ...+| + -.+|.-...+..--..+++.|+.+||+.+||+.+...+..
T Consensus 197 -----------~rYL~LA~~Fi~~---rg~~P-----~--~~rg~e~~~gHAvr~iyl~~G~A~l~~~~gDds~r~~~~~ 255 (589)
T COG3533 197 -----------QRYLDLARRFIHQ---RGVEP-----L--AQRGDELEGGHAVRQIYLYIGAADLAEETGDDSLRQAAEF 255 (589)
T ss_pred -----------hHHHHHHHHHHHH---hccCh-----h--hcCchhhhhhhHHHHHHHhhhHHHHHHHhCCHHHHHHHHH
Confidence 8999999875533 22222 0 0112111245555678999999999999999999999999
Q ss_pred HHHHHHHh
Q 003940 648 LQNTQDEL 655 (784)
Q Consensus 648 L~~~~~~~ 655 (784)
+++.+.++
T Consensus 256 lW~~~t~k 263 (589)
T COG3533 256 LWQNVTTR 263 (589)
T ss_pred HHHHhhhh
Confidence 99887665
No 126
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.08 E-value=0.0016 Score=64.17 Aligned_cols=88 Identities=22% Similarity=0.231 Sum_probs=62.9
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcc---cEEEEEcCCCCc-cHHHHHHH----------
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERP-DVDKVYMT---------- 193 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~---FV~VkvD~ee~p-di~~~y~~---------- 193 (784)
.+.+....=+||-|.++|.|.||+.|+.+-- .=.++-+.+.++ |-.|-|++|... +.+ .||.
T Consensus 23 ~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP---~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~-~y~~~~~~~W~~iP 98 (157)
T KOG2501|consen 23 TEVLASEALQGKVVGLYFSAHWCPPCRDFTP---ILKDFYEELKDNAAPFEVVFVSSDRDEESLD-EYMLEHHGDWLAIP 98 (157)
T ss_pred ccchHhHhhCCcEEEEEEEEEECCchhhCCc---hHHHHHHHHHhcCCceEEEEEecCCCHHHHH-HHHHhcCCCeEEec
Confidence 3445555567899999999999999997632 444566666667 888888776433 333 3332
Q ss_pred -------HHHHhcCCCCCCcEEEECCCCceecc
Q 003940 194 -------YVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 194 -------~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
-+...+++.|.|+.+++.|||..+..
T Consensus 99 f~d~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 99 FGDDLIQKLSEKYEVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred CCCHHHHHHHHhcccCcCceeEEecCCCCEehH
Confidence 13344689999999999999988864
No 127
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.02 E-value=0.00089 Score=52.21 Aligned_cols=63 Identities=27% Similarity=0.442 Sum_probs=46.6
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (784)
++.|+.+||++|+.+.. .+.+- +..+.++..+.+|.++.++.... ....+..+.|++++.+++
T Consensus 1 l~~~~~~~c~~c~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRP-VLAEL---ALLNKGVKFEAVDVDEDPALEKE-----LKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhh-HHHHH---HhhCCCcEEEEEEcCCChHHhhH-----HHhCCCccccEEEEEeCC
Confidence 46889999999999875 33322 46677899999999887765432 112367899999999887
No 128
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.01 E-value=0.0011 Score=67.93 Aligned_cols=66 Identities=9% Similarity=0.067 Sum_probs=48.4
Q ss_pred CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi 217 (784)
+++|+|+|+++||..|+.|.. .|+ ++++... ....||||++.- ...| ++.+.||.+|+ .+|+.+
T Consensus 102 ~~~VVV~Fya~wc~~C~~m~~-~l~--~LA~k~~-~vkFvkI~ad~~---~~~~--------~i~~lPTlliy-k~G~~v 165 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLLNQ-HLS--ELARKFP-DTKFVKIISTQC---IPNY--------PDKNLPTILVY-RNGDIV 165 (192)
T ss_pred CCEEEEEEECCCCchHHHHHH-HHH--HHHHHCC-CCEEEEEEhHHh---HhhC--------CCCCCCEEEEE-ECCEEE
Confidence 469999999999999999985 443 5555543 456678887642 1222 88899999988 678877
Q ss_pred cc
Q 003940 218 MG 219 (784)
Q Consensus 218 ~~ 219 (784)
..
T Consensus 166 ~~ 167 (192)
T cd02988 166 KQ 167 (192)
T ss_pred EE
Confidence 54
No 129
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=97.00 E-value=0.0043 Score=60.17 Aligned_cols=89 Identities=13% Similarity=0.142 Sum_probs=68.8
Q ss_pred chHHHHHHH----hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHH---------
Q 003940 126 WGEEAFAEA----RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM--------- 192 (784)
Q Consensus 126 ~~~eal~~A----k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~--------- 192 (784)
-+++|+++| |+|.|+++|+.+.+-=.-|...=+.++.+++|.+++|+|||.-=-|++.. +..+.+.
T Consensus 5 s~~~Al~~A~~~~~~e~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~~nfv~Wg~dvt~~-~~~~~fl~~~~~~~g~ 83 (136)
T cd02990 5 SLEAAFQEACYRKARDRKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLSQNFITWGWDMTKE-SNKARFLSSCTRHFGS 83 (136)
T ss_pred cHHHHHHHHhhhhhhhcceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHHcCEEEEeeeccch-hhhhHHHHhhhhhhhH
Confidence 358999999 99999999999999888888888889999999999999999999998753 2211111
Q ss_pred HHHHHhc--CCCCCCcEEEECCCCc
Q 003940 193 TYVQALY--GGGGWPLSVFLSPDLK 215 (784)
Q Consensus 193 ~~~q~~~--g~~G~P~~vfl~pdg~ 215 (784)
.+.|... +..-+|...++.+..+
T Consensus 84 ~a~~~~~~~~~~~fP~~avI~~~~~ 108 (136)
T cd02990 84 VAAQTIRNIKTDQLPAILIIMGKRS 108 (136)
T ss_pred HHHHHHHhcCcCCCCeEEEEEecCC
Confidence 1122221 4678999999987654
No 130
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=96.97 E-value=0.0015 Score=66.35 Aligned_cols=70 Identities=10% Similarity=0.218 Sum_probs=41.4
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCc-----cH-HHHHHHHHHHhcCC--CCCCcEEEECC
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERP-----DV-DKVYMTYVQALYGG--GGWPLSVFLSP 212 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~p-----di-~~~y~~~~q~~~g~--~G~P~~vfl~p 212 (784)
+|.|+++||++|+... |.+.++-++ .|..+-|..++.+ .+ +.. .......+|. .++|+++++|+
T Consensus 73 lV~FwaswCp~C~~e~------P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~-~~~~~~~~g~~~~~iPttfLId~ 145 (181)
T PRK13728 73 VVLFMQGHCPYCHQFD------PVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAP-PDVMQTFFPNIPVATPTTFLVNV 145 (181)
T ss_pred EEEEECCCCHhHHHHH------HHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCc-hhHHHHHhCCCCCCCCeEEEEeC
Confidence 6679999999999864 344444443 3555444444332 11 000 0111122353 69999999999
Q ss_pred CCceec
Q 003940 213 DLKPLM 218 (784)
Q Consensus 213 dg~pi~ 218 (784)
+|+..+
T Consensus 146 ~G~i~~ 151 (181)
T PRK13728 146 NTLEAL 151 (181)
T ss_pred CCcEEE
Confidence 999753
No 131
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=96.91 E-value=0.43 Score=54.84 Aligned_cols=130 Identities=17% Similarity=0.207 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-----------------CCCcchHHHHHHHHHHHHHHcCCHHH
Q 003940 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-----------------PGFLDDYAFLISGLLDLYEFGSGTKW 641 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~-----------------~~~leDyA~li~aLL~LYeaTgd~~y 641 (784)
++.++.++.....-.+..||++++.|.-.+.||+... .+++-+- .....++..|.+++|+.-
T Consensus 327 ~~~l~W~i~gL~a~~~yAYd~~~N~~~PM~~dG~dltgy~l~RdGYYG~KGtvl~~~p~~~-~yll~~vra~~~s~D~~L 405 (557)
T PF06917_consen 327 KEMLTWAIDGLKAYYRYAYDEENNEIRPMWNDGQDLTGYRLPRDGYYGKKGTVLKPFPADP-DYLLPYVRAYRLSRDPEL 405 (557)
T ss_dssp HHHHHHHHHHHHHHHHHHEETTTTEE--EETTSEB-TTEE-SS-BTTB-TT-EE--EE--H-HHHHHHHHHHHHS--HHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCcccccccccCCCCCeeccccCch-hHhHHHHHHHHcCCCHHH
Confidence 7888888888888888889999999888888875421 1222222 336699999999999988
Q ss_pred HHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 003940 642 LVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLA 721 (784)
Q Consensus 642 L~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~ 721 (784)
.+.+..++.. | . =|.+-......+.+ +....+....++.++++|++.+++ +.|++.|+++-+
T Consensus 406 w~~~~~m~~~----~-g--LGdig~~~~~~~~~--------~~~~~~~sp~~L~allEL~~atq~---~~~l~lA~~~g~ 467 (557)
T PF06917_consen 406 WDLARTMAHH----F-G--LGDIGNAAGKEPRV--------NMQTDNASPYLLFALLELYQATQD---ARYLELADQVGE 467 (557)
T ss_dssp HHHHHHHHHH----T-T---EE-TTBTTBS-EE---------TT-----HHHHHHHHHHHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHHHHhh----c-C--cccccCcccccccc--------ccCCCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHH
Confidence 8888777753 3 1 12111111111111 223334445788899999999985 899999998877
Q ss_pred HHHHHH
Q 003940 722 VFETRL 727 (784)
Q Consensus 722 ~~~~~l 727 (784)
.+..+-
T Consensus 468 ~l~~~~ 473 (557)
T PF06917_consen 468 NLFEQH 473 (557)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765544
No 132
>PLN03009 cellulase
Probab=96.82 E-value=0.024 Score=66.08 Aligned_cols=65 Identities=18% Similarity=0.250 Sum_probs=45.5
Q ss_pred CCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHH---HHHccCChHHHHHHHHHHHHHHHhccCCCCceeec
Q 003940 357 VGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLD---AFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSA 426 (784)
Q Consensus 357 v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~---Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfysa 426 (784)
+-||+|-=-.--+..+| |-|--.+|+|.|.+ ++...+-|..++.++-.+|||++ |+.++|+||.-
T Consensus 72 lsGGwyDAGD~~Ky~~p----~a~s~~~L~w~~~~f~d~~~~~~~~diLdeikw~~D~llk-m~~~~~~~y~q 139 (495)
T PLN03009 72 LTGGYYDAGDNVKFGFP----MAFTTTMLAWSVIEFGDLMPSSELRNSLVAIRWATDYLLK-TVSQPNRIFVQ 139 (495)
T ss_pred CCCcceeCCCCceeccc----hHHHHHHHHHHHHHhHhhCCccccHHHHHHHHHHHHHHHH-cccCcCeEEEE
Confidence 55666651122233345 77777778887765 55556678899999999999998 77777999873
No 133
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=96.78 E-value=0.0058 Score=70.04 Aligned_cols=90 Identities=16% Similarity=0.123 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-CC--Ccch
Q 003940 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-PG--FLDD 621 (784)
Q Consensus 545 WNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~-~~--~leD 621 (784)
-.+.++.+||.|++++++. +..| ..++|+.|+++.+|..++-- .+ ........ .. -...
T Consensus 155 ~~~~~AAalA~As~v~k~~--d~~~--------A~~~L~~A~~~~~~a~~~~~-----~~---~~~~~~~~~~~Y~~~~~ 216 (444)
T PF00759_consen 155 ATAEFAAALAAASRVFKDF--DPAY--------AAQCLKAAKEAYAFAKKNPG-----VY---SDNPQPNGGGFYNSSGY 216 (444)
T ss_dssp HHHHHHHHHHHHHHHHTTT--THHH--------HHHHHHHHHHHHHHHHHSTT-----HG---GGTSTCTTTTTSHCS-S
T ss_pred HHHHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHHHHHhCCC-----cc---cCCcccccCCcccCCCc
Confidence 3478889999999999862 1222 25789999999999987641 11 01110101 10 1223
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003940 622 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQ 652 (784)
Q Consensus 622 yA~li~aLL~LYeaTgd~~yL~~A~~L~~~~ 652 (784)
.-.++.|.++||.+||+++|++.|++....+
T Consensus 217 ~De~~wAA~~Ly~aTg~~~Y~~~a~~~~~~~ 247 (444)
T PF00759_consen 217 EDELAWAAAELYRATGDESYLDYAKEYYDDL 247 (444)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHCCTS
T ss_pred ccHHHHHHHHHHHhcCcHHHHHHHHHhHHhh
Confidence 3457889999999999999999998877444
No 134
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=96.77 E-value=0.0048 Score=58.58 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=49.2
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHHH--------------HHHhcC
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY--------------VQALYG 200 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~~--------------~q~~~g 200 (784)
.||+++|.|+ +.||++|..+-. .++ +..+.+. +++..|-|..+. ++..+.|.+. ....+|
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~-~l~--~~~~~~~~~~~~vv~is~d~-~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g 97 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEAC-DFR--DLYEEFKALGAVVIGVSPDS-VESHAKFAEKYGLPFPLLSDPDGKLAKAYG 97 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHH-HHH--HHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHhCCCceEEECCccHHHHHhC
Confidence 4899999998 589999997643 232 3334343 344444444432 2222233211 111235
Q ss_pred CCCC---------CcEEEECCCCceeccc-cccC
Q 003940 201 GGGW---------PLSVFLSPDLKPLMGG-TYFP 224 (784)
Q Consensus 201 ~~G~---------P~~vfl~pdg~pi~~~-tY~p 224 (784)
+..+ |+++++|++|++.+.. ++.+
T Consensus 98 v~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~ 131 (140)
T cd03017 98 VWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKP 131 (140)
T ss_pred CccccccccCCcceeEEEECCCCEEEEEEecCCc
Confidence 5555 8999999999988763 3444
No 135
>PTZ00056 glutathione peroxidase; Provisional
Probab=96.77 E-value=0.0038 Score=64.22 Aligned_cols=19 Identities=11% Similarity=0.275 Sum_probs=17.7
Q ss_pred cCCcEEEEEcccCChhhhh
Q 003940 137 RDVPIFLSIGYSTCHWCHV 155 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~ 155 (784)
.||+|+|.|+++||++|..
T Consensus 38 kGkvvlv~fwAswC~~C~~ 56 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKK 56 (199)
T ss_pred CCCEEEEEEECCCCCChHH
Confidence 5899999999999999985
No 136
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.75 E-value=0.0065 Score=59.16 Aligned_cols=85 Identities=12% Similarity=0.115 Sum_probs=47.1
Q ss_pred cCCcEEEEEccc-CChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHHH--------------HHHhcC
Q 003940 137 RDVPIFLSIGYS-TCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY--------------VQALYG 200 (784)
Q Consensus 137 e~KpI~l~~~~~-wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~~--------------~q~~~g 200 (784)
.+|+++|.|++. ||.+|...-. .+ .+..+.++ +++..|-|..+....+ +.|.+. +...+|
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~-~l--~~~~~~~~~~~v~vi~Is~d~~~~~-~~~~~~~~~~~~~l~D~~~~~~~~~g 104 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQAC-GL--RDNMDELKKAGVVVLGISTDKPEKL-SRFAEKELLNFTLLSDEDHQVAEQFG 104 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHH-HH--HHHHHHHHHCCCEEEEEcCCCHHHH-HHHHHHhCCCCeEEECCCchHHHHhC
Confidence 579999999975 7889986432 23 23344444 3455555554432222 223211 111123
Q ss_pred CCC------------CCcEEEECCCCceeccc-cccCC
Q 003940 201 GGG------------WPLSVFLSPDLKPLMGG-TYFPP 225 (784)
Q Consensus 201 ~~G------------~P~~vfl~pdg~pi~~~-tY~p~ 225 (784)
+.+ .|+++++|++|+++..- +|.|+
T Consensus 105 v~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~ 142 (154)
T PRK09437 105 VWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTS 142 (154)
T ss_pred CCcccccccccccCcceEEEEECCCCEEEEEEcCCCcc
Confidence 322 27889999999988763 34443
No 137
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0022 Score=73.86 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=60.4
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc---ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~---~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~ 204 (784)
.+-++..-..+.-|||.|||+||.-|+.+.. +=.+-|..|.+ .--..|||.++..++...| ++.|+
T Consensus 32 ~dnf~~~i~~~~~vlVeFYAPWCghck~LaP---ey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y--------~v~gy 100 (493)
T KOG0190|consen 32 KDNFKETINGHEFVLVEFYAPWCGHCKALAP---EYEKAATELKEEGSPVKLAKVDATEESDLASKY--------EVRGY 100 (493)
T ss_pred cccHHHHhccCceEEEEEEchhhhhhhhhCc---HHHHHHHHhhccCCCceeEEeecchhhhhHhhh--------cCCCC
Confidence 3456777788999999999999999999986 33455566665 4557799999888887777 89999
Q ss_pred CcEEEECCCCce
Q 003940 205 PLSVFLSPDLKP 216 (784)
Q Consensus 205 P~~vfl~pdg~p 216 (784)
||.-++ -+|++
T Consensus 101 PTlkiF-rnG~~ 111 (493)
T KOG0190|consen 101 PTLKIF-RNGRS 111 (493)
T ss_pred CeEEEE-ecCCc
Confidence 998876 45554
No 138
>PLN02266 endoglucanase
Probab=96.70 E-value=0.073 Score=62.21 Aligned_cols=82 Identities=17% Similarity=0.151 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC-----CC---CCC
Q 003940 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP-----SK---APG 617 (784)
Q Consensus 546 Nal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~-----~~---~~~ 617 (784)
-+-++.|||.|++++++. +..| ..++|+.|+++.+|..++= |.+ .++. +. ..+
T Consensus 192 a~e~AAALAaas~vfk~~--D~~y--------A~~~L~~Ak~ly~fa~~~~-----g~y----~~~~~~~~~~~y~s~s~ 252 (510)
T PLN02266 192 AAETAAALAAASLVFRKS--DPTY--------SKLLVRRAIRVFQFADKYR-----GAY----SNGLKPDVCPFYCSYSG 252 (510)
T ss_pred HHHHHHHHHHHHHHhccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----CCc----cCCCCcccCCCcccCCc
Confidence 377899999999999862 1122 2568999999999987642 111 1110 10 112
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003940 618 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 649 (784)
Q Consensus 618 ~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~ 649 (784)
+.+ .++.|.++||.+|||+.|++.++...
T Consensus 253 ~~D---El~WAAawLy~ATGd~~Yl~~~~~~~ 281 (510)
T PLN02266 253 YQD---ELLWGAAWLHKATKNPTYLNYIQVNG 281 (510)
T ss_pred chH---HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 233 55778899999999999999887654
No 139
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=96.68 E-value=0.13 Score=56.99 Aligned_cols=137 Identities=9% Similarity=0.011 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CCCCCCCcchHHHHHH
Q 003940 549 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSKAPGFLDDYAFLIS 627 (784)
Q Consensus 549 ~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg-~~~~~~~leDyA~li~ 627 (784)
++++|..+++.+++ +++.+.+.++.+++.+.. .+ .|.+.....+. ......+..+-+=.+.
T Consensus 170 I~~~L~~~~~~~~~----------------~~~~~~i~~~i~~~~~~~-~~-~g~w~~~~~~~~~~~~~~wChG~~Gi~~ 231 (343)
T cd04794 170 ILYILLQTPLFLLK----------------PSLAPLIKRSLDYLLSLQ-FP-SGNFPSSLGNRKRDRLVQWCHGAPGIVY 231 (343)
T ss_pred HHHHHHhhhhhcCC----------------ccHHHHHHHHHHHHHHhh-cc-CCCCCCccCCCCCCccccccCCCchHHH
Confidence 36778888888766 789999999999998763 32 34322211111 1111233444445677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCC
Q 003940 628 GLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGS 707 (784)
Q Consensus 628 aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~ 707 (784)
.++.++++++|+++.+.|+...+.+.+. | +.. . +...=-|.+=.+..|++++.++++
T Consensus 232 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~------g-~~~---~------------~~~lCHG~~G~~~~lL~~~~~~~~- 288 (343)
T cd04794 232 LLAKAYLVFKEEQYLEAAIKCGELIWKR------G-LLK---K------------GPGLCHGIAGNAYAFLLLYRLTGD- 288 (343)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHh------C-Ccc---C------------CCccccCccchHHHHHHHHHHhCc-
Confidence 8999999999999999998887765321 1 000 0 000111222235788999999986
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 003940 708 KSDYYRQNAEHSLAVFETRLK 728 (784)
Q Consensus 708 ~~~~y~e~A~~~l~~~~~~l~ 728 (784)
++|.++|..+.........
T Consensus 289 --~~~~~~a~~~~~~~~~~~~ 307 (343)
T cd04794 289 --LKYLYRACKFAEFLINYGF 307 (343)
T ss_pred --HHHHHHHHHHHHHHhcchh
Confidence 7899999988887766554
No 140
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0027 Score=73.13 Aligned_cols=95 Identities=19% Similarity=0.224 Sum_probs=67.2
Q ss_pred ccccCCChhhhcccCCCccccc------chHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc--ccE
Q 003940 104 RLAAEHSPYLLQHAHNPVDWFA------WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFV 175 (784)
Q Consensus 104 rL~~e~SpYL~qha~~~v~W~~------~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~--~FV 175 (784)
.|...-+|||.-. .-|=+|.. -++---..+-.++|-|||.|||+||+-|+.++. .=.++++.+.. +-|
T Consensus 345 ~l~Gk~~p~~kSq-piPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP---~~eeLAe~~~~~~~vv 420 (493)
T KOG0190|consen 345 FLDGKVKPHLKSQ-PIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAP---IYEELAEKYKDDENVV 420 (493)
T ss_pred HhcCccccccccC-CCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhh---HHHHHHHHhcCCCCcE
Confidence 4666778888763 23334431 122334567789999999999999999999986 23467777764 689
Q ss_pred EEEEcCCCC--ccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003940 176 SIKVDREER--PDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (784)
Q Consensus 176 ~VkvD~ee~--pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg 214 (784)
..|+|.+.+ |.+ .+.|+||+.|.-..+
T Consensus 421 iAKmDaTaNd~~~~------------~~~~fPTI~~~pag~ 449 (493)
T KOG0190|consen 421 IAKMDATANDVPSL------------KVDGFPTILFFPAGH 449 (493)
T ss_pred EEEeccccccCccc------------cccccceEEEecCCC
Confidence 999999753 332 345899999997665
No 141
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=96.66 E-value=0.0015 Score=69.60 Aligned_cols=81 Identities=23% Similarity=0.360 Sum_probs=59.6
Q ss_pred chHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEE---cCCCCccHHHHHHHHHHHhcCCC
Q 003940 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV---DREERPDVDKVYMTYVQALYGGG 202 (784)
Q Consensus 126 ~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~Vkv---D~ee~pdi~~~y~~~~q~~~g~~ 202 (784)
+.++.+..-|.++ .-||+||++||.-|++++. ++. +|---|..-=.|||| |.+.-|.+...+ |+.
T Consensus 32 DLddkFkdnkddd-iW~VdFYAPWC~HCKkLeP-iWd--eVG~elkdig~PikVGKlDaT~f~aiAnef--------giq 99 (468)
T KOG4277|consen 32 DLDDKFKDNKDDD-IWFVDFYAPWCAHCKKLEP-IWD--EVGHELKDIGLPIKVGKLDATRFPAIANEF--------GIQ 99 (468)
T ss_pred hhhHHhhhcccCC-eEEEEeechhhhhcccccc-hhH--HhCcchhhcCCceeecccccccchhhHhhh--------ccC
Confidence 4455555554433 4689999999999999985 443 566666666678876 788889988776 999
Q ss_pred CCCcEEEECCCCceec
Q 003940 203 GWPLSVFLSPDLKPLM 218 (784)
Q Consensus 203 G~P~~vfl~pdg~pi~ 218 (784)
|+||+.|+..+.-.=|
T Consensus 100 GYPTIk~~kgd~a~dY 115 (468)
T KOG4277|consen 100 GYPTIKFFKGDHAIDY 115 (468)
T ss_pred CCceEEEecCCeeeec
Confidence 9999999977654333
No 142
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0031 Score=71.11 Aligned_cols=74 Identities=26% Similarity=0.371 Sum_probs=60.0
Q ss_pred HHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003940 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (784)
Q Consensus 132 ~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~ 211 (784)
......+++.+|.|+++||..|+.+.. +|. +++..+...-....||.++.+++-+.| ++.|+|+.+++.
T Consensus 41 ~~~~~~~~~~~v~fyapwc~~c~~l~~-~~~--~~~~~l~~~~~~~~vd~~~~~~~~~~y--------~i~gfPtl~~f~ 109 (383)
T KOG0191|consen 41 DFLLKDDSPWLVEFYAPWCGHCKKLAP-TYK--KLAKALKGKVKIGAVDCDEHKDLCEKY--------GIQGFPTLKVFR 109 (383)
T ss_pred HHhhccCCceEEEEECCCCcchhhhch-HHH--HHHHHhcCceEEEEeCchhhHHHHHhc--------CCccCcEEEEEc
Confidence 344567899999999999999999986 454 788888764555678999888888777 899999999999
Q ss_pred CCCce
Q 003940 212 PDLKP 216 (784)
Q Consensus 212 pdg~p 216 (784)
++.++
T Consensus 110 ~~~~~ 114 (383)
T KOG0191|consen 110 PGKKP 114 (383)
T ss_pred CCCce
Confidence 98333
No 143
>cd04434 LanC_like LanC-like proteins. LanC is the cyclase enzyme of the lanthionine synthetase. Lanthionine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as a precursor peptide and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans), in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition. A related domain is also present in LanM and other pro- and eukaryotic proteins of unknown function.
Probab=96.62 E-value=0.85 Score=49.36 Aligned_cols=134 Identities=12% Similarity=-0.016 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE--ecCCCCCCCCCcchHHHHH
Q 003940 549 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--FRNGPSKAPGFLDDYAFLI 626 (784)
Q Consensus 549 ~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~--~~dg~~~~~~~leDyA~li 626 (784)
++.+|+.+++.+.+ +.+.+.++.+..++.+.+.+ + ++.++. ..++.....++..+-+=.+
T Consensus 164 i~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~wChG~~Gi~ 225 (343)
T cd04434 164 ILLALLLLYKKTVD----------------KSLEALIKALLKYERRLQDD-S-GGFWWPSRSNGGNRFLVAWCHGAPGIL 225 (343)
T ss_pred HHHHHHHHHHhcCC----------------hhHHHHHHHHHHHHHHccCC-C-CCCCCCCCCCCCccccceecCCChhHH
Confidence 47788899988854 56777777777766555433 2 333221 1112223345566667788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCC
Q 003940 627 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (784)
Q Consensus 627 ~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~ 706 (784)
.+++.+++.++++.+++.+++..+.+....... ..+...-.|.+=.+..|++++..+++
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~lChG~~G~~~~ll~l~~~~~~ 284 (343)
T cd04434 226 LALLLAYKALGDDKYDEAAEKALELAWKRGLLE---------------------LKNPGLCHGIAGNLLILLLLYKLTGD 284 (343)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHhhhcc---------------------CCCCCcCcCccchHHHHHHHHHHhCC
Confidence 899999999999999999999887776554210 01122234555567788899999985
Q ss_pred CCchHHHHHHHHHHHHHH
Q 003940 707 SKSDYYRQNAEHSLAVFE 724 (784)
Q Consensus 707 ~~~~~y~e~A~~~l~~~~ 724 (784)
+.+++.|+.+.....
T Consensus 285 ---~~~~~~a~~~~~~~~ 299 (343)
T cd04434 285 ---LKFLARALALALLLI 299 (343)
T ss_pred ---HHHHHHHHHHHHHHH
Confidence 788888877766544
No 144
>cd04792 LanM-like LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
Probab=96.59 E-value=0.94 Score=56.25 Aligned_cols=139 Identities=13% Similarity=0.076 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHH
Q 003940 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFL 625 (784)
Q Consensus 546 Nal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~l 625 (784)
.+=++++|+++++++++ ++|++.|.++.++....+.. +.+. |...++.....++..+.+=.
T Consensus 645 ~sGi~~aL~~l~~~~~d----------------~~~~~~a~~~l~~~~~~~~~-~~~~--w~~~~~~~~~~~WChG~~GI 705 (825)
T cd04792 645 ASGIAWALLRLYKVTGD----------------SRYLKLAHKALKYERRLFSE-EGWN--WPRKDGNSFSAAWCHGAPGI 705 (825)
T ss_pred HHHHHHHHHHHHHHcCc----------------HHHHHHHHHHHHHHHHhcCH-hhcC--CCCcCcCCCCCcccCCcHHH
Confidence 34457899999999988 78999999999987665533 2111 11111112234666677778
Q ss_pred HHHHHHHHHH--cCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHH
Q 003940 626 ISGLLDLYEF--GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 703 (784)
Q Consensus 626 i~aLL~LYea--Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~l 703 (784)
+.+++.++++ ..++.+.+.+.++.+.+..... .. +...--|++=.+..|+.++..
T Consensus 706 ~lal~~~~~~~~~~d~~~~~~i~~~~~~~~~~~~-~~----------------------~~slCHG~~Gil~~ll~~~~~ 762 (825)
T cd04792 706 LLARLELLKFNDLDDEELKEEIEIALKTTLKEGF-GN----------------------NHSLCHGDLGNLEILLYAAKA 762 (825)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHHHHHHhcC-CC----------------------CCeecCCCcchHHHHHHHHHh
Confidence 8899999999 6888888888877776654321 00 011122334456778888998
Q ss_pred hCCCCchHHHHHHHHHHHHHHHHHHH
Q 003940 704 VAGSKSDYYRQNAEHSLAVFETRLKD 729 (784)
Q Consensus 704 t~~~~~~~y~e~A~~~l~~~~~~l~~ 729 (784)
+++ ++|.+.|+++...+.....+
T Consensus 763 ~~~---~~~~~~a~~~~~~l~~~~~~ 785 (825)
T cd04792 763 FGD---EKLQELANSLAIKVLSQGKK 785 (825)
T ss_pred cCC---HHHHHHHHHHHHHHHHHHHh
Confidence 875 78999998887776665554
No 145
>COG3533 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.58 E-value=0.18 Score=57.84 Aligned_cols=124 Identities=19% Similarity=0.194 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li 626 (784)
+-+|.|+..+++++|. ...++.+.++|++|...|- ++.+. .....+ +-.+-
T Consensus 134 ghLieg~va~~qaTGk----------------r~lldV~~rlADhi~tvfg-p~~~q--------~~g~~g----H~eie 184 (589)
T COG3533 134 GHLIEGGVAAHQATGK----------------RRLLDVVCRLADHIATVFG-PEEDQ--------VPGYCG----HPEIE 184 (589)
T ss_pred HHHHhhhhHHHHhhCc----------------chHHHHHHHHHHhhhhhcC-ccccc--------cccccC----CCchh
Confidence 6678999999999997 7899999999999998873 32221 111222 23456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHH----HHHHHHHHHH
Q 003940 627 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSV----SVINLVRLAS 702 (784)
Q Consensus 627 ~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv----~a~~L~rL~~ 702 (784)
.||.+||++|||++||+.|+.....- -.++ +. . |-.+. + -+-++ .+..+.+|++
T Consensus 185 lAl~~Ly~~Tg~~rYL~LA~~Fi~~r---g~~P-----~~-~--------rg~e~-~----~gHAvr~iyl~~G~A~l~~ 242 (589)
T COG3533 185 LALAELYRLTGDQRYLDLARRFIHQR---GVEP-----LA-Q--------RGDEL-E----GGHAVRQIYLYIGAADLAE 242 (589)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHh---ccCh-----hh-c--------Cchhh-h----hhhHHHHHHHhhhHHHHHH
Confidence 89999999999999999998654321 1111 00 0 00011 0 22232 4455779999
Q ss_pred HhCCCCchHHHHHHHHHHHHHH
Q 003940 703 IVAGSKSDYYRQNAEHSLAVFE 724 (784)
Q Consensus 703 lt~~~~~~~y~e~A~~~l~~~~ 724 (784)
++|+ +.+++.++.+.+.+.
T Consensus 243 ~~gD---ds~r~~~~~lW~~~t 261 (589)
T COG3533 243 ETGD---DSLRQAAEFLWQNVT 261 (589)
T ss_pred HhCC---HHHHHHHHHHHHHhh
Confidence 9996 788988887777654
No 146
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=96.53 E-value=0.25 Score=58.05 Aligned_cols=291 Identities=17% Similarity=0.176 Sum_probs=157.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeecccCCCccccccccccCCceEEech
Q 003940 371 HVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTS 450 (784)
Q Consensus 371 ~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~ 450 (784)
.|+-||-.+ ++|..++-||.+++++.|++.|.+..+-|+.-+-.|.|==|..++-... . .+. .-|..
T Consensus 150 ~vsvFEttI----R~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AFdTptgiP~~~vnl~~g----~-~~~----~~~~~ 216 (522)
T PTZ00470 150 GVSVFETTI----RVLGGLLSAYDLTGDEMYLEKAREIADRLLPAFNEDTGFPASEINLATG----R-KSY----PGWAG 216 (522)
T ss_pred eeeeeeeeh----hhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeecccC----C-CCC----cccCC
Confidence 467788555 5889999999999999999999999999998886666643333331110 0 000 01110
Q ss_pred HHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCc-hHHHHhcCCC-HHHHHHHHHHHHHHHHhh
Q 003940 451 KEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDS-SASASKLGMP-LEKYLNILGECRRKLFDV 528 (784)
Q Consensus 451 ~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~-~~~a~~~g~~-~~~l~~~l~~~r~kL~~~ 528 (784)
+...+.-..+. -|+..+..++ .++..+..+.+.+.|.+.
T Consensus 217 ---------------------------------------~~~~lAe~gSl~LEF~~LS~lTGd~kY~~~a~~i~~~l~~~ 257 (522)
T PTZ00470 217 ---------------------------------------GCSILSEVGTLQLEFNYLSEITGDPKYAEYVDKVMDALFSM 257 (522)
T ss_pred ---------------------------------------CccchhhhhhHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhc
Confidence 00000000000 0222222222 244556666777777664
Q ss_pred hcCCC--CC-CCCch------hhhchHHHH---HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhc
Q 003940 529 RSKRP--RP-HLDDK------VIVSWNGLV---ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHL 596 (784)
Q Consensus 529 R~~R~--~P-~lDdK------iitsWNal~---I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l 596 (784)
|...+ -| ++|.. -..+|-|.. -.=|.+.+..++.. .+.|.++-.++++-+.+++
T Consensus 258 ~~~~~GL~p~~i~~~~g~~~~~~~siGa~~DS~YEYLlK~~il~~~~--------------d~~~~~~~~~a~~~i~~~l 323 (522)
T PTZ00470 258 KPAINGLYPIFLNPDAGRFCGNHISLGALGDSYYEYLLKQWLYTNGR--------------EERYRRLFVESAKGIIEHL 323 (522)
T ss_pred CCCCCCccceEECCccCccCCCceeecCCcchhHHHHHHHHHhcCCC--------------cHHHHHHHHHHHHHHHHHh
Confidence 43210 01 11110 001122222 12456667677531 1678888888888888876
Q ss_pred ccc-CCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHHHHHhccccCCCc----c
Q 003940 597 YDE-QTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEF-------GSGTKWLVWAIELQNTQDELFLDREGGG----Y 664 (784)
Q Consensus 597 ~d~-~~G~l~~~~~dg~~~~~~~leDyA~li~aLL~LYea-------Tgd~~yL~~A~~L~~~~~~~F~D~~~Gg----y 664 (784)
... .++-.+-.-.+|.. .....+--+.++-|++.|.-. ..+.+|++.|++|.+.+...+....+|- |
T Consensus 324 ~~~s~~~~~~v~~~~~~~-~~~~~~hL~cF~gG~~aLg~~~~~~~~~~~~~~~~~~a~~l~~tC~~~Y~~~~tGl~PE~~ 402 (522)
T PTZ00470 324 YKRSPKGLTYIAEMDGGS-LTNKMEHLACFAGGMFALGAAINITPDDEKSARYMEVGEEVTKTCYETYATSPTGLGPEIF 402 (522)
T ss_pred cccCCCCcEEEeeccCCc-CcchhhhhhhhccchhhhcccccccccccccHHHHHHHHHHHHHHHHHHHhcccCCCCceE
Confidence 432 22333332222221 122233445666777777642 2356899999999999988876544542 2
Q ss_pred cccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 003940 665 FNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLM 737 (784)
Q Consensus 665 f~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~~p~~~~~~ 737 (784)
...... .... ....|...+= .-=.++.+.-|+++||+ +.|++.|.++++++.... +.+.+++.+
T Consensus 403 ~~~~~~-~~~~---~~~~d~~Y~L-RPE~iES~fylyR~TgD---~~yre~gW~~f~ai~k~~-rt~~Gya~i 466 (522)
T PTZ00470 403 HFDPNS-GDIS---PNVHDSHYIL-RPETVESIFILYRLTGD---PKYREWAWKIFQAIEKHC-KTENGYSGL 466 (522)
T ss_pred EeccCc-cccc---cccCCCCCCC-ChhHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHh-cCCcccccc
Confidence 111110 0000 0001111100 01377889999999996 899999999999987765 567776653
No 147
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=96.52 E-value=0.36 Score=53.14 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHhccCCCCceee
Q 003940 380 YDQGQLANVYLDAFSLTK--DVFYSYICRDILDYLRRDMIGPGGEIFS 425 (784)
Q Consensus 380 yDNA~Ll~~ya~Ay~~t~--d~~y~~~A~~t~~fl~~~m~~~~Ggfys 425 (784)
.+.|..+.+++.+....+ ++.+.+.+.++++||.+ .+.++|+|..
T Consensus 92 ~~Ta~~l~al~~~~~~~~~~~~~~~~~i~~a~~~L~~-~Q~~dG~f~~ 138 (348)
T cd02889 92 DDTAEALKALLRLQKKPPDGKKVSRERLYDAVDWLLS-MQNSNGGFAA 138 (348)
T ss_pred CChHHHHHHHHHhhccCcccchhhHHHHHHHHHHHHH-hccCCCCEee
Confidence 378999999998888763 57789999999999997 5778999864
No 148
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.52 E-value=0.0078 Score=52.01 Aligned_cols=66 Identities=14% Similarity=0.251 Sum_probs=40.8
Q ss_pred EEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 143 l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+.|+++||++|+.+.. .++.-. ++..|..+.||.++.+.... +++...+|+.++|+.+ + +|+.+.+
T Consensus 2 ~~f~~~~Cp~C~~~~~-~L~~~~----i~~~~~~~~v~~~~~~~~~~---~~l~~~~g~~~vP~v~-i--~g~~igg 67 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKE-ILAKLN----VKPAYEVVELDQLSNGSEIQ---DYLEEITGQRTVPNIF-I--NGKFIGG 67 (84)
T ss_pred EEEECCCChhHHHHHH-HHHHcC----CCCCCEEEEeeCCCChHHHH---HHHHHHhCCCCCCeEE-E--CCEEEcC
Confidence 5789999999999874 333221 22237788888765433222 2233445888999975 4 4666644
No 149
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=96.49 E-value=0.22 Score=60.50 Aligned_cols=289 Identities=17% Similarity=0.157 Sum_probs=167.5
Q ss_pred HHHHHHHHHHHHHHHcCCCcccCCCeEEE----EecC-CCCCCCCCchhHHH-HHHHHHHHHHHHHccCChHHHHHHHHH
Q 003940 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHR----YSVD-ERWHVPHFEKMLYD-QGQLANVYLDAFSLTKDVFYSYICRDI 408 (784)
Q Consensus 335 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~R----YsvD-~~W~vPHFEKMLyD-NA~Ll~~ya~Ay~~t~d~~y~~~A~~t 408 (784)
+....+|..--+.|+..+|.-...+-..+ +..+ ..|.+------||| -|-++-.|+-..++||+..|+++|.++
T Consensus 596 e~~v~~a~~ige~i~~~~I~g~~~~~~~~~~is~~~~g~~~~lsp~g~dlydG~~GI~LF~ayL~~vtgk~~Y~~ia~~~ 675 (963)
T COG4403 596 EYFVSIANDIGEHIIKQLIIGVDDFETSLIWISTTFEGQGWSLSPLGNDLYDGSAGIALFFAYLALVTGKDYYKEIAIKA 675 (963)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCcceEEEEEeeeccceEEeecCCchhhcCcchHHHHHHHHHHhcChHHHHHHHHHH
Confidence 44555555555666665555444333333 2223 66776445566788 888999999999999999999999999
Q ss_pred HHHHHHhccCCC-----CceeecccCCCccccccccccCCceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCC
Q 003940 409 LDYLRRDMIGPG-----GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSD 483 (784)
Q Consensus 409 ~~fl~~~m~~~~-----Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~d 483 (784)
+.=+.+.+.... |||. |-.|-|| ..--|.+++++.
T Consensus 676 L~~~~~sv~~~~~~~~iga~~---------------G~~g~~y--al~~I~~~~~~~----------------------- 715 (963)
T COG4403 676 LQDSRKSVNNNLNPINIGAFT---------------GLSGYFY--ALWKIYSVTRDN----------------------- 715 (963)
T ss_pred HHHHHHhhhhccCCccccccc---------------ccchhhh--hhHHHHHhcccH-----------------------
Confidence 998888765422 3332 1222233 222223222221
Q ss_pred CCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHH--HHHHHHHHHHhh
Q 003940 484 PHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV--ISSFARASKILK 561 (784)
Q Consensus 484 p~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~--I~ALa~a~~~~~ 561 (784)
.|. .++.+.+. ..+.+... -..| -+ -||++ |-.|...|+.+.
T Consensus 716 ---------~l~----------------~~~~~~i~-~le~~v~~---~~~~----d~---i~Gl~g~i~~L~~iYk~~~ 759 (963)
T COG4403 716 ---------YLI----------------QSAENSIR-HLEILVQK---SKDP----DF---INGLAGVICVLVSIYKLTD 759 (963)
T ss_pred ---------HHH----------------HHHHHHHH-HHHHHHhh---ccCc----ch---hhccHHHHHHHHHHHhhcc
Confidence 110 00111111 11122111 1111 11 24444 778888999876
Q ss_pred hhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHH
Q 003940 562 SEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKW 641 (784)
Q Consensus 562 d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li~aLL~LYeaTgd~~y 641 (784)
+ ++.++.|..+.+.+.+.....++ .+....++...-+-.|.+|+.+|++||++.+
T Consensus 760 e----------------pk~l~~ais~~~~l~~~~v~~d~---------s~~~l~gfshg~sgi~~tL~~ly~~T~e~~l 814 (963)
T COG4403 760 E----------------PKFLELAISLGRILMEKIVGNDS---------SETVLLGFSHGASGIILTLLKLYEATGEESL 814 (963)
T ss_pred c----------------hHHHHHHHHHHHHHHHHhhcccc---------ccceecccccchHHHHHHHHHHHHhcCcHHH
Confidence 6 89999999999999876543221 1123457777888999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccCCCcccccCCCCCcccccc--c---------------------cCCCCCCCChhH-HHHHHH
Q 003940 642 LVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRV--K---------------------EDHDGAEPSGNS-VSVINL 697 (784)
Q Consensus 642 L~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~--k---------------------~~~D~a~PS~Ns-v~a~~L 697 (784)
+..+.+++..-..+|-+.. ..|... .-..++.|. + ...++..-.... -..+.|
T Consensus 815 ~~~i~e~~~~Er~~f~~~~--~~Wc~g-~~gilv~rl~l~~~~~de~i~~Ei~~~l~~~i~~glgn~~~Chgdfg~ie~l 891 (963)
T COG4403 815 LKKIKELLSYERMKFSDKF--TRWCSG-APGILVSRLLLKKIYDDESIDREIQQALKTIINNGLGNDSLCHGDFGIIEVL 891 (963)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHhcC-CcceeechhhhhhhcchHHHHHHHHHHHHHHHhccCCCccccccchHHHHHH
Confidence 9999999988777776531 112211 111111111 1 112222222222 234445
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHh
Q 003940 698 VRLASIVAGSKSDYYRQNAEHSLAVFETRLKDM 730 (784)
Q Consensus 698 ~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~~ 730 (784)
+.-+..+++ +...+.|..+.....++..++
T Consensus 892 ~~~a~~l~~---~~l~es~~~~~~~~~~k~~~~ 921 (963)
T COG4403 892 LHYAKILSD---SELLESANKLANELVSKAITY 921 (963)
T ss_pred HHHHHHhCC---HHHHHHHHHHHHHHHHhhccc
Confidence 566667764 778888887777666665544
No 150
>PLN02340 endoglucanase
Probab=96.46 E-value=0.046 Score=65.14 Aligned_cols=186 Identities=19% Similarity=0.189 Sum_probs=108.5
Q ss_pred CCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHH---HHcc-CChHHHHHHHHHHHHHHHhccCCCCceeecc-cCCC
Q 003940 357 VGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDA---FSLT-KDVFYSYICRDILDYLRRDMIGPGGEIFSAE-DADS 431 (784)
Q Consensus 357 v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~A---y~~t-~d~~y~~~A~~t~~fl~~~m~~~~Ggfysa~-DADS 431 (784)
+-||+|- + .=++-.---|-|.-+.|+|.|.+- +... +-|..++.++-.+||+++ |..+++.||.-+ |.+.
T Consensus 74 lsGGwyD-A---GD~vKf~~p~a~t~t~L~w~~~ef~~~~~~~~~~~~~ldeirw~~Dyllk-~~~~~~~~~~qVGdg~~ 148 (614)
T PLN02340 74 LVGGYYD-A---GDHVKFGLPMAFAVTMLSWGAVDFRKEITALNQMQRTLWAIRWGTDYFIK-AHTQPNVLWGQVGDGDS 148 (614)
T ss_pred CCCCcee-C---CCcceecchhHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHHHHHHHHHH-hcCCCCeEEEEeCCCCc
Confidence 6688875 2 222333334888888999998763 4433 348899999999999998 766667777643 2222
Q ss_pred ccccccccccCCceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCH
Q 003940 432 AETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPL 511 (784)
Q Consensus 432 ~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~ 511 (784)
. |+ .|..-|-.. .-+..|.|+
T Consensus 149 D------H~------~W~~PE~~~-------~~R~~y~i~---------------------------------------- 169 (614)
T PLN02340 149 D------HY------CWERAEDMT-------TPRTAYKLD---------------------------------------- 169 (614)
T ss_pred c------cc------cCCChhhcC-------CcCceeecC----------------------------------------
Confidence 1 11 233211000 000000000
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHH
Q 003940 512 EKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASF 591 (784)
Q Consensus 512 ~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~ 591 (784)
...|..|- -+-+..|||.+++++++. +..| ..++|+.|+++.+|
T Consensus 170 --------------------~~~pgSd~------a~e~AAAlAaas~vfk~~--D~~Y--------A~~lL~~Ak~ly~f 213 (614)
T PLN02340 170 --------------------QNHPGSDL------AGETAAALAAASKAFKPY--NSSY--------SDLLLVHAKQLFSF 213 (614)
T ss_pred --------------------CCCCccHH------HHHHHHHHHHHHHhccCC--CHHH--------HHHHHHHHHHHHHH
Confidence 01233222 277889999999998862 1222 25689999999999
Q ss_pred HHHhccccCCCeEEEEecCCCC--CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003940 592 IRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQN 650 (784)
Q Consensus 592 l~~~l~d~~~G~l~~~~~dg~~--~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~ 650 (784)
..++= |.+......+.. ...++- =.++.|.+.||.+|||+.||+.+.....
T Consensus 214 A~~~~-----g~y~~s~~~a~~~Y~ss~~~---DEl~WAAawLy~ATgd~~Yl~~~~~~~~ 266 (614)
T PLN02340 214 ADKFR-----GLYDDSIQNAKKFYTSSGYS---DELLWAAAWLYRATGDEYYLKYVVDNAV 266 (614)
T ss_pred HHhCC-----CCccCCCCccccCCCCCCcc---hHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 87742 211100011110 012222 4568899999999999999999887543
No 151
>PLN02412 probable glutathione peroxidase
Probab=96.45 E-value=0.0074 Score=60.19 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=17.6
Q ss_pred cCCcEEEEEcccCChhhhh
Q 003940 137 RDVPIFLSIGYSTCHWCHV 155 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~ 155 (784)
.+|+|+|.|+++||+.|+.
T Consensus 28 ~gk~vlv~f~a~~C~~c~~ 46 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDS 46 (167)
T ss_pred CCCEEEEEEeCCCCCChHH
Confidence 5799999999999999995
No 152
>PLN02420 endoglucanase
Probab=96.44 E-value=0.12 Score=60.63 Aligned_cols=89 Identities=15% Similarity=0.195 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li 626 (784)
+-+..|||.|++++++. +..| ..++|+.|+++.+|..++= |.+-.....+.+.-......+-.++
T Consensus 190 a~~AAALA~AS~vfk~~--D~~Y--------A~~~L~~Ak~ly~fA~~~~-----g~y~~~~~~~~g~Y~s~s~y~DEl~ 254 (525)
T PLN02420 190 GETAAAMAAASIVFRST--NPHY--------SHLLLHHAQQLFEFGDKYR-----GKYDESLKVVKSYYASVSGYMDELL 254 (525)
T ss_pred HHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHHHHHhcC-----CccCCCCcccCCCCCCcCcccHHHH
Confidence 77889999999999862 1122 2467899999999887531 2110000000000011111245778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 003940 627 SGLLDLYEFGSGTKWLVWAIELQN 650 (784)
Q Consensus 627 ~aLL~LYeaTgd~~yL~~A~~L~~ 650 (784)
.|.+.||.+|||..|++.|.+...
T Consensus 255 WAAawLY~ATgd~~Yl~~a~~~~~ 278 (525)
T PLN02420 255 WGATWLYRATDNEHYMSYVVDMAH 278 (525)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999998876543
No 153
>PLN02171 endoglucanase
Probab=96.43 E-value=0.11 Score=62.23 Aligned_cols=84 Identities=18% Similarity=0.240 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhc--ccc---CCCeEEEEecCCCCCCCCCcch
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHL--YDE---QTHRLQHSFRNGPSKAPGFLDD 621 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l--~d~---~~G~l~~~~~dg~~~~~~~leD 621 (784)
+-+..|||.|++++++. +..| ..++|+.|+++.+|..++= ++. ...++|.+ ..++.
T Consensus 179 ~e~AAAlAaaS~vfk~~--D~~Y--------A~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~s-------~s~y~-- 239 (629)
T PLN02171 179 GETAAAMAAASIVFRRS--NPGY--------ANELLTHAKQLFDFADKYRGKYDSSITVAQKYYRS-------VSGYG-- 239 (629)
T ss_pred HHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHhCCCcccCCCcccCCccCC-------CCCcc--
Confidence 77889999999999762 1122 2467999999999997751 110 00112110 11222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003940 622 YAFLISGLLDLYEFGSGTKWLVWAIELQN 650 (784)
Q Consensus 622 yA~li~aLL~LYeaTgd~~yL~~A~~L~~ 650 (784)
=.++.|..+||.+|||+.||+.+....+
T Consensus 240 -DEl~WAAawLy~ATgd~~Yl~~~~~~~~ 267 (629)
T PLN02171 240 -DELLWAAAWLYQATNNQYYLDYLGNNGD 267 (629)
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3568899999999999999998877554
No 154
>PLN02345 endoglucanase
Probab=96.35 E-value=0.14 Score=59.34 Aligned_cols=82 Identities=17% Similarity=0.224 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchHHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYAF 624 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~--~~~~~leDyA~ 624 (784)
+-+..||+.++.++++.. ..| ..++|+.|+++.+|..++- |.+..+..++.. ...++-+ .
T Consensus 145 ~~~AAAlA~as~vfk~~D--~~Y--------A~~lL~~Ak~ly~fa~~~~-----g~y~~~~~~~~~~Y~s~~~~D---E 206 (469)
T PLN02345 145 AETAAAMAAASLVFKSSD--STY--------SDTLLKHAKQLFNFADKYR-----GSYSESIPEVQDYYNSTGYGD---E 206 (469)
T ss_pred HHHHHHHHHHHHHhccCC--HHH--------HHHHHHHHHHHHHHHHhCC-----CcccCCCCccCCCCCCccccc---H
Confidence 778899999999998621 122 2568999999999998752 111111000000 0112223 4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q 003940 625 LISGLLDLYEFGSGTKWLVWAI 646 (784)
Q Consensus 625 li~aLL~LYeaTgd~~yL~~A~ 646 (784)
++.|.+.||.+|||..|++.+.
T Consensus 207 l~WAAawLy~ATgd~~Yl~~~~ 228 (469)
T PLN02345 207 LLWAASWLYHATGDKTYLAYVT 228 (469)
T ss_pred HHHHHHHHHHHhCCHHHHHHHH
Confidence 6889999999999999999874
No 155
>PLN02613 endoglucanase
Probab=96.23 E-value=0.21 Score=58.30 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC---CCCCCcchH
Q 003940 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---KAPGFLDDY 622 (784)
Q Consensus 546 Nal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~---~~~~~leDy 622 (784)
-+-++.|||.|++++++. +..| ..++|+.|+++.+|..++= |.+. +..+ ...++.|
T Consensus 174 a~~~AAALAaas~vfk~~--D~~y--------A~~~L~~Ak~ly~~a~~~~-----g~y~----~~~~~y~s~s~~~D-- 232 (498)
T PLN02613 174 AGEAAAALAAASLVFKDV--DSSY--------SSKLLNHARSLFEFADKYR-----GSYQ----ASCPFYCSYSGYQD-- 232 (498)
T ss_pred HHHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----CCcC----CCCCcccccCccch--
Confidence 478899999999999862 1122 2568999999999998641 1111 1111 0123333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003940 623 AFLISGLLDLYEFGSGTKWLVWAIEL 648 (784)
Q Consensus 623 A~li~aLL~LYeaTgd~~yL~~A~~L 648 (784)
.++.|.++||.+|||+.|++.+...
T Consensus 233 -El~WAAawLy~aTGd~~Yl~~~~~~ 257 (498)
T PLN02613 233 -ELLWAAAWLYKATGEKKYLNYVISN 257 (498)
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3577899999999999999887653
No 156
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.20 E-value=0.018 Score=47.83 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=38.8
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+..|+++||++|+.+.. .|+. .+.-..++|.++.+...+.+. ...|..+.|+.++- |+.+.|
T Consensus 2 i~lf~~~~C~~C~~~~~-~l~~--------~~i~~~~vdi~~~~~~~~~~~----~~~~~~~vP~~~~~---~~~~~g 63 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKE-YLTS--------KGIAFEEIDVEKDSAAREEVL----KVLGQRGVPVIVIG---HKIIVG 63 (74)
T ss_pred EEEEcCCCChhHHHHHH-HHHH--------CCCeEEEEeccCCHHHHHHHH----HHhCCCcccEEEEC---CEEEee
Confidence 35689999999999753 3322 134455677776554333221 22388899999873 666443
No 157
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=96.19 E-value=0.014 Score=54.00 Aligned_cols=78 Identities=15% Similarity=0.316 Sum_probs=42.8
Q ss_pred cCCcEEEEEccc-CChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHH--------------HHHhcC
Q 003940 137 RDVPIFLSIGYS-TCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY--------------VQALYG 200 (784)
Q Consensus 137 e~KpI~l~~~~~-wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~--------------~q~~~g 200 (784)
.+||++|.|+.. ||+.|..--. .++ +..+.+.+ +.-.|-|..+....+.+ +.+. ....++
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~-~l~--~~~~~~~~~~~~vi~is~d~~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~ 99 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELP-ELN--ELYKKYKDKGVQVIGISTDDPEEIKQ-FLEEYGLPFPVLSDPDGELAKAFG 99 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHH-HHH--HHHHHHHTTTEEEEEEESSSHHHHHH-HHHHHTCSSEEEEETTSHHHHHTT
T ss_pred CCCcEEEEEeCccCccccccchh-HHH--HHhhhhccceEEeeecccccccchhh-hhhhhccccccccCcchHHHHHcC
Confidence 689999999999 9999985433 121 22333332 34444454443222222 2111 111124
Q ss_pred CC------CCCcEEEECCCCceec
Q 003940 201 GG------GWPLSVFLSPDLKPLM 218 (784)
Q Consensus 201 ~~------G~P~~vfl~pdg~pi~ 218 (784)
.. +.|.++++|++|++++
T Consensus 100 ~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 100 IEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp CEETTTSEESEEEEEEETTSBEEE
T ss_pred CccccCCceEeEEEEECCCCEEEe
Confidence 44 6777777777777654
No 158
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=96.18 E-value=0.018 Score=56.17 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=19.7
Q ss_pred HHHhhcCCcEEEEEcccCChhhhh
Q 003940 132 AEARKRDVPIFLSIGYSTCHWCHV 155 (784)
Q Consensus 132 ~~Ak~e~KpI~l~~~~~wC~wC~~ 155 (784)
..+.-.||+|+|.|.++||+.|..
T Consensus 16 ~l~~~~Gk~vvv~~~as~C~~c~~ 39 (153)
T TIGR02540 16 SLEKYRGKVSLVVNVASECGFTDQ 39 (153)
T ss_pred cHHHhCCCEEEEEEeCCCCCchhh
Confidence 344456899999999999999965
No 159
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=96.16 E-value=0.039 Score=63.77 Aligned_cols=164 Identities=12% Similarity=0.078 Sum_probs=106.1
Q ss_pred hchHHHHHHHHHHHHHHh--hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE--ecC-CCCCCC-
Q 003940 543 VSWNGLVISSFARASKIL--KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--FRN-GPSKAP- 616 (784)
Q Consensus 543 tsWNal~I~ALa~a~~~~--~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~--~~d-g~~~~~- 616 (784)
-.-+...+-+|+-||..+ +| +.+|+.|+++++.|...| +..+|.-+.. .+. +.....
T Consensus 76 fEt~iR~lGgLLSay~ls~~~d----------------~~lL~kA~~lad~Ll~aF-~t~~g~P~~~~n~~~~~~~~~~~ 138 (452)
T PF01532_consen 76 FETTIRVLGGLLSAYDLSGEGD----------------PILLSKAVELADRLLPAF-DTPTGIPYPRVNLRTGGKNRWPG 138 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHGGGG-SSSSS---SEEETTTCEEETTCC
T ss_pred HHhhhHhhhhhHHHHHHHhccc----------------hHHHHHHHHHHHHHHHhc-cCCCccccceeeecccCCCCCCC
Confidence 345688899999999999 77 789999999999999999 4345543322 222 111111
Q ss_pred --CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-CCCc---ccccCCCCCccccccccCCCCCCCChh
Q 003940 617 --GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR-EGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGN 690 (784)
Q Consensus 617 --~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~-~~Gg---yf~t~~~~~~l~~R~k~~~D~a~PS~N 690 (784)
..+.+.+-++.=+..|.++|||++|.+.|..+.+.+.+.-... ..|- +.+... .... .......++
T Consensus 139 ~~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~~l~~~~~~~~~~gL~p~~id~~~--g~~~------~~~~~~Ga~ 210 (452)
T PF01532_consen 139 GESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYDALWRSQNRSKIPGLFPNFIDPST--GKWT------SSSISLGAG 210 (452)
T ss_dssp GEEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHHHHHCCCCCHSBTTB-BSEEETTT--S-BS------STEE-SSTT
T ss_pred CcccccccccceechhHHHHHhhccHHHHHHHHHHHHHHHhhhccCCcccCcceecCCc--Cccc------ccccccCCC
Confidence 2345566677888999999999999999999999887732110 1121 111111 0000 011112222
Q ss_pred H-HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhhh
Q 003940 691 S-VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 732 (784)
Q Consensus 691 s-v~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~~p~ 732 (784)
+ ..-+.|++.+.++++. ++.|++.-++.++.+...+...|.
T Consensus 211 ~DS~YEYLlK~~lL~g~~-d~~~~~~~~~a~~~i~~~Ll~~~~ 252 (452)
T PF01532_consen 211 GDSFYEYLLKMYLLLGGT-DEQYRDMYDEAVDAIKKHLLFRPS 252 (452)
T ss_dssp THHHHHHHHHHHHHTTTT-THHHHHHHHHHHHHHHHHTEEEBT
T ss_pred cchHHHhhhhhhhhcCcc-chHHHHHHHHHHHHHHHHhhccCC
Confidence 2 4788999999999853 488999998888888887765544
No 160
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.15 E-value=0.013 Score=55.83 Aligned_cols=33 Identities=21% Similarity=0.497 Sum_probs=23.3
Q ss_pred cCCcEEEEEcccCChh-hhhhhhcccCCHHHHHHHhc
Q 003940 137 RDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLND 172 (784)
Q Consensus 137 e~KpI~l~~~~~wC~w-C~~Me~etf~d~eVa~~ln~ 172 (784)
.+|+++|.|+++||.. |...-.+ + .++.+.+.+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~-l--~~~~~~~~~ 54 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLAN-L--AQALKQLGA 54 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHH-H--HHHHHHhhH
Confidence 6899999999999998 9865432 2 234444543
No 161
>PLN00119 endoglucanase
Probab=96.12 E-value=0.2 Score=58.27 Aligned_cols=85 Identities=13% Similarity=0.045 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCCCCcchHHHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAPGFLDDYAFL 625 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~~~~~~leDyA~l 625 (784)
+-+..|||.+++++++. +..| ..++|+.|+++.+|..++- |. +... .++...-.. ...+-.+
T Consensus 180 ~~~AAAlA~as~vfk~~--D~~y--------A~~lL~~Ak~~y~fA~~~~-----g~-y~~~~~~~~g~Y~s-s~~~DEl 242 (489)
T PLN00119 180 GETAAAMAAASIAFAPS--DPAY--------ASILIGHAKDLFEFAKAHP-----GL-YQNSIPNAGGFYAS-SGYEDEL 242 (489)
T ss_pred HHHHHHHHHHHHHcccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----Cc-ccCCCCCCCCCCCC-CchhhHH
Confidence 77888999999999862 1122 2568999999999998741 11 1110 011100000 1223468
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 003940 626 ISGLLDLYEFGSGTKWLVWAIEL 648 (784)
Q Consensus 626 i~aLL~LYeaTgd~~yL~~A~~L 648 (784)
+.|.+.||.+|||..|++.+...
T Consensus 243 ~WAAawLY~aTgd~~Yl~~~~~~ 265 (489)
T PLN00119 243 LWAAAWLHRATNDQTYLDYLTQA 265 (489)
T ss_pred HHHHHHHHHHhCCHHHHHHHHhc
Confidence 89999999999999999876543
No 162
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=96.12 E-value=0.0055 Score=58.92 Aligned_cols=82 Identities=26% Similarity=0.349 Sum_probs=44.2
Q ss_pred hHHHHHHHhhcCCc-EEEEEcccCChhhhhhhhcccCCHHHHHHHhcc-cEEEEE-cCCCCccHHHHHHHHHHHhcCCCC
Q 003940 127 GEEAFAEARKRDVP-IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKV-DREERPDVDKVYMTYVQALYGGGG 203 (784)
Q Consensus 127 ~~eal~~Ak~e~Kp-I~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~-FV~Vkv-D~ee~pdi~~~y~~~~q~~~g~~G 203 (784)
.++..++.+.-.|+ -++-|+.+||+.|...= |-+.++...+ =|.+++ .|++.+++-..|.. .|...
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~v------P~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-----~g~~~ 97 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNV------PVLAKIAEANPNIEVRIILRDENKELMDQYLT-----NGGRS 97 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHH------HHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT------SS--
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHH------HHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-----CCCee
Confidence 35555555555555 56678999999999743 4555555544 455554 55555655444421 36778
Q ss_pred CCcEEEECCCCceecc
Q 003940 204 WPLSVFLSPDLKPLMG 219 (784)
Q Consensus 204 ~P~~vfl~pdg~pi~~ 219 (784)
+|+.||++.+|+++..
T Consensus 98 IP~~I~~d~~~~~lg~ 113 (129)
T PF14595_consen 98 IPTFIFLDKDGKELGR 113 (129)
T ss_dssp SSEEEEE-TT--EEEE
T ss_pred cCEEEEEcCCCCEeEE
Confidence 9999999999999855
No 163
>PLN02909 Endoglucanase
Probab=96.11 E-value=0.29 Score=57.01 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC---CCCCCcchHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---KAPGFLDDYA 623 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~---~~~~~leDyA 623 (784)
+-+..||+.+++++++. +..| ..++|+.|+++.+|..++= |. +. +..+ ...++.|
T Consensus 183 ~~~AAAlA~as~vfk~~--D~~y--------A~~lL~~Ak~~y~fA~~~~-----g~-y~---~~~~~y~s~s~y~D--- 240 (486)
T PLN02909 183 AETAAAMAASSMVFRHV--DHKY--------SRRLLNKAKLLFKFAKAHK-----GT-YD---GECPFYCSYSGYND--- 240 (486)
T ss_pred HHHHHHHHHHHHhhccC--CHHH--------HHHHHHHHHHHHHHHHhCC-----CC-cC---CCCCccccCCCcch---
Confidence 78899999999999862 1122 2568999999999998751 11 10 1111 1123323
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 003940 624 FLISGLLDLYEFGSGTKWLVWAIE 647 (784)
Q Consensus 624 ~li~aLL~LYeaTgd~~yL~~A~~ 647 (784)
.++.|...||.+|||..|++.+..
T Consensus 241 El~WAAawLy~aTgd~~Yl~~~~~ 264 (486)
T PLN02909 241 ELLWAATWLYKATKKQMYLKYIKH 264 (486)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHh
Confidence 568888999999999999997765
No 164
>PLN02308 endoglucanase
Probab=96.09 E-value=0.32 Score=56.81 Aligned_cols=84 Identities=13% Similarity=0.172 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CC---CCCCCcchH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PS---KAPGFLDDY 622 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg-~~---~~~~~leDy 622 (784)
+.++.|||.+++++++. +..| ..++|+.|+++.+|..++= |.+....... .+ ...++ .
T Consensus 175 ~~~AAAlA~as~vf~~~--D~~Y--------A~~lL~~Ak~ly~fa~~~~-----g~y~~~~~~~~~~~Y~~~s~~---~ 236 (492)
T PLN02308 175 GETAAALAAASIVFRKR--DPAY--------SRLLLDRAVRVFAFADKYR-----GAYSSSLHAAVCPFYCDFNGY---Q 236 (492)
T ss_pred HHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcC-----CcccCCCCcccCCCcCCCCcc---c
Confidence 78899999999999851 1122 2568999999999998742 2111000000 00 00122 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003940 623 AFLISGLLDLYEFGSGTKWLVWAIEL 648 (784)
Q Consensus 623 A~li~aLL~LYeaTgd~~yL~~A~~L 648 (784)
=.++.|..+||.+|||..||+.+...
T Consensus 237 DEl~WAAawLy~ATgd~~Yl~~~~~~ 262 (492)
T PLN02308 237 DELLWGAAWLHKASRRREYREYIVKN 262 (492)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 45688999999999999999877654
No 165
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=96.03 E-value=0.027 Score=61.06 Aligned_cols=77 Identities=22% Similarity=0.318 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHH
Q 003940 549 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISG 628 (784)
Q Consensus 549 ~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li~a 628 (784)
++..|++||+++++ ++|++.|.++++-+++.=.-..+-++-| |.+ | + .++
T Consensus 285 v~~~L~kAy~VF~E----------------ekyl~aa~ecadvVW~rGlLkkg~Gich----Gva---G----N---aYv 334 (403)
T KOG2787|consen 285 VAYTLAKAYQVFKE----------------EKYLEAAMECADVVWKRGLLKKGVGICH----GVA---G----N---AYV 334 (403)
T ss_pred HHHHHHHHHHHhhH----------------HHHHHHHHHHHHHHHHhhhhhcCCcccc----ccc---C----c---hhh
Confidence 57789999999997 7999999999999976422212222332 211 1 1 346
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 003940 629 LLDLYEFGSGTKWLVWAIELQNTQDEL 655 (784)
Q Consensus 629 LL~LYeaTgd~~yL~~A~~L~~~~~~~ 655 (784)
+|.||.+|+|.+||.+|.+..+++.+.
T Consensus 335 FLsLyRLT~d~kYlyRA~kFae~lld~ 361 (403)
T KOG2787|consen 335 FLSLYRLTGDMKYLYRAKKFAEWLLDY 361 (403)
T ss_pred hHhHHHHcCcHHHHHHHHHHHHHHHhh
Confidence 788999999999999999999988764
No 166
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=95.99 E-value=0.01 Score=57.92 Aligned_cols=23 Identities=9% Similarity=0.075 Sum_probs=18.7
Q ss_pred HHhhcCCcEEEEEcccCChhhhhh
Q 003940 133 EARKRDVPIFLSIGYSTCHWCHVM 156 (784)
Q Consensus 133 ~Ak~e~KpI~l~~~~~wC~wC~~M 156 (784)
.+.-.||+|+|.|+++||+ |...
T Consensus 17 l~~~~Gk~vvl~fwatwC~-C~~e 39 (152)
T cd00340 17 LSKYKGKVLLIVNVASKCG-FTPQ 39 (152)
T ss_pred HHHhCCCEEEEEEEcCCCC-chHH
Confidence 3334589999999999999 9863
No 167
>PF01532 Glyco_hydro_47: Glycosyl hydrolase family 47; InterPro: IPR001382 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 47 GH47 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.113 from EC). Alpha-mannosidase is involved in the maturation of Asn-linked oligo-saccharides []. The enzyme hydrolyses terminal 1,2-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide man(9)(glcnac)(2) in a calcium-dependent manner. The mannose residues are trimmed away to produce, first, man(8)glcnac(2), then a man(5)(glcnac)(2) structure.; GO: 0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, 0005509 calcium ion binding, 0016020 membrane; PDB: 2RI9_A 2RI8_B 1KRE_B 1KKT_A 1KRF_A 1NXC_A 1G6I_A 1DL2_A 1HCU_A 1FO2_A ....
Probab=95.95 E-value=0.26 Score=57.05 Aligned_cols=298 Identities=14% Similarity=0.061 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHHHHcCCCcccCCCeEEE-EecCCCCC--CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003940 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHR-YSVDERWH--VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDY 411 (784)
Q Consensus 335 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~R-YsvD~~W~--vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~f 411 (784)
+..++.|..--+++.. .+|--.|=.+. ......-. .|.-+-.|-+-+-+.--|....++|||+.|.+.|+++.+.
T Consensus 98 ~~lL~kA~~lad~Ll~--aF~t~~g~P~~~~n~~~~~~~~~~~~~~~la~~gs~~lEf~~LS~lTgd~kY~~~a~~~~~~ 175 (452)
T PF01532_consen 98 PILLSKAVELADRLLP--AFDTPTGIPYPRVNLRTGGKNRWPGGESSLAEAGSLQLEFTRLSQLTGDPKYFDAADRIYDA 175 (452)
T ss_dssp HHHHHHHHHHHHHHGG--GGSSSSS---SEEETTTCEEETTCCGEEEHHHHCSSHHHHHHHHHHHS-THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH--hccCCCccccceeeecccCCCCCCCCcccccccccceechhHHHHHhhccHHHHHHHHHHHH
Confidence 3445555555555544 45654444442 33321111 1222346788888888899999999999999999999999
Q ss_pred HHHh--ccCCCCceeecccCCCccccccccccCCceEEechHHHHHHhhhh-HHHHHHHhcccCCCCcCCCCCCCCCCCC
Q 003940 412 LRRD--MIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH-AILFKEHYYLKPTGNCDLSRMSDPHNEF 488 (784)
Q Consensus 412 l~~~--m~~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~-~~l~~~~f~l~~~Gn~e~~~~~dp~g~f 488 (784)
|.+. -....|-+-..+|+++.. -.+..+.|. +.+|. .+-+.+.|-+....
T Consensus 176 l~~~~~~~~~~gL~p~~id~~~g~-------~~~~~~~~G------a~~DS~YEYLlK~~lL~g~~-------------- 228 (452)
T PF01532_consen 176 LWRSQNRSKIPGLFPNFIDPSTGK-------WTSSSISLG------AGGDSFYEYLLKMYLLLGGT-------------- 228 (452)
T ss_dssp HHCCCCCHSBTTB-BSEEETTTS--------BSSTEE-SS------TTTHHHHHHHHHHHHHTTTT--------------
T ss_pred HHHhhhccCCcccCcceecCCcCc-------ccccccccC------CCcchHHHhhhhhhhhcCcc--------------
Confidence 9872 222345444467776521 112333333 11121 23333333332100
Q ss_pred CCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchH--------------HHHHHHHH
Q 003940 489 KGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWN--------------GLVISSFA 554 (784)
Q Consensus 489 ~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWN--------------al~I~ALa 554 (784)
...+ .+-..+.++.+++.|+.....+. ..+-..+..++ +..+-++.
T Consensus 229 -----------d~~~-------~~~~~~a~~~i~~~Ll~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~hLsCF~pG~l 288 (452)
T PF01532_consen 229 -----------DEQY-------RDMYDEAVDAIKKHLLFRPSTPG--DYDLLFLGEYSTGGGGRLSPKMDHLSCFLPGML 288 (452)
T ss_dssp -----------THHH-------HHHHHHHHHHHHHHTEEEBTTTT----T-EEE-EEETTTTTEEESEEECGGGGHHHHH
T ss_pred -----------chHH-------HHHHHHHHHHHHHHhhccCCCCC--ccceeEeeeeecccCccccccccchhhcchhHH
Confidence 0001 01223344445555433211111 00101111111 11122333
Q ss_pred HH-HHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-CCC-----------CC-CCCCcc
Q 003940 555 RA-SKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGP-----------SK-APGFLD 620 (784)
Q Consensus 555 ~a-~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~-dg~-----------~~-~~~~le 620 (784)
.+ ++.+++ +.+++.|.++.+-.........+|.....+. +.. .. ......
T Consensus 289 ~Lg~~~~~~----------------~~~~~~A~~l~~~C~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (452)
T PF01532_consen 289 ALGAKLFND----------------EGDLELAEELTETCYWLYKSTPTGLGPEIFSFDPCEENCQWDEERKDFMIKISDP 352 (452)
T ss_dssp HHHHHTTTC----------------HHHHHHHHHHHHHHHHHHHTSSSSS--SEEEESCSCG--TEETGGCSCCHHGGG-
T ss_pred HHhhcccCc----------------hhHHHHHHHHHHHHHHHHHhcccCCCceEEEeeccccccccchhhcccccccccc
Confidence 33 333332 7899999999988766543323454443321 110 00 000111
Q ss_pred hH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHH
Q 003940 621 DY---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 697 (784)
Q Consensus 621 Dy---A~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L 697 (784)
.| -.+|+.+.-+|++|||+.|+++|-++++.+..++.- ..||-.-.+-. .. ....++..|| -.+++-|
T Consensus 353 ~y~LRPE~iES~fylyR~TgD~~yre~gw~if~ai~k~~r~--~~G~a~i~dv~----~~-~~~~~D~meS--f~laETl 423 (452)
T PF01532_consen 353 RYLLRPETIESLFYLYRATGDPKYREWGWDIFQAIEKYCRT--ECGYAGIKDVT----SD-PPQKDDRMES--FFLAETL 423 (452)
T ss_dssp -B-S--HHHHHHHHHHHHH-BHHHHHHHHHHHHHHHHHTEE--TTEE--BSETT----SS-SSCBBS-B-C--HHHHTHH
T ss_pred cccchhhhhhheeEEEEEcCCchHHHHHHHHHHHHHHhccc--ceehhhhcccC----cC-CcccCCCccc--eehHhhh
Confidence 22 379999999999999999999999999999998843 34554322110 00 1112333443 3577777
Q ss_pred HHHHHHhCC
Q 003940 698 VRLASIVAG 706 (784)
Q Consensus 698 ~rL~~lt~~ 706 (784)
-=|+-+..+
T Consensus 424 KYlYLlFsd 432 (452)
T PF01532_consen 424 KYLYLLFSD 432 (452)
T ss_dssp HHHHHHTSS
T ss_pred HHHHhhcCC
Confidence 777877765
No 168
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=95.82 E-value=0.046 Score=55.81 Aligned_cols=98 Identities=12% Similarity=0.020 Sum_probs=53.4
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHH-hcccEEEEEcCCCCccHHHHHH------------------HHHH
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYM------------------TYVQ 196 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~l-n~~FV~VkvD~ee~pdi~~~y~------------------~~~q 196 (784)
.||+|+|.|+ ++||+.|.. |-..|. +..+.+ +.++..|=|..+. +...+.|. ....
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~-el~~l~--~~~~~f~~~g~~vigIS~D~-~~~~~a~~~~~~~~~~l~fpllsD~~~~ia 105 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPT-ELGDVA--DHYEELQKLGVDVYSVSTDT-HFTHKAWHSSSETIAKIKYAMIGDPTGALT 105 (187)
T ss_pred CCCeEEEEEECCCCCCcCHH-HHHHHH--HHHHHHHhCCCEEEEEeCCC-HHHHHHHHHhhccccCCceeEEEcCchHHH
Confidence 5899999999 999999997 333343 222333 2344444443332 11111111 0111
Q ss_pred HhcCC----CCC--CcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHH
Q 003940 197 ALYGG----GGW--PLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 197 ~~~g~----~G~--P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
..+|+ .|+ |.++++||+|++.+...+-.+. + +..-++|+.+.
T Consensus 106 ~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~---~-~~~~eil~~l~ 153 (187)
T PRK10382 106 RNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGI---G-RDASDLLRKIK 153 (187)
T ss_pred HHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCC---C-CCHHHHHHHHH
Confidence 11243 366 9999999999998863332121 1 24556665553
No 169
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=95.80 E-value=0.0046 Score=67.79 Aligned_cols=249 Identities=16% Similarity=0.213 Sum_probs=142.3
Q ss_pred HHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC---CCceeecccCCCccccccccccCCceEEechHHHH
Q 003940 379 LYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP---GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVE 454 (784)
Q Consensus 379 LyD-NA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~---~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~ 454 (784)
||+ -|-++.+|.++++.++++.|.+.+.+.++.+.+.+... +.|+|.. ..|- .|..
T Consensus 7 ly~G~~Gi~l~l~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~gl~~G--------------~~Gi--~~~l---- 66 (355)
T PF05147_consen 7 LYDGSAGIALFLSELYRITGDPKYLDLAEKLLEKLINYIENNPYDSIGLFSG--------------LAGI--AYAL---- 66 (355)
T ss_dssp TTTSHHHHHHHHHCCCCCCTHHHHHHHHHHHHHHHCCCHHCC--S--STTTS--------------CHHH--HHHH----
T ss_pred CCCchHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhccCcCCcccCC--------------hHHH--HHHH----
Confidence 555 67889999999999999999999999999998866432 2233321 0111 0111
Q ss_pred HHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCC
Q 003940 455 DILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPR 534 (784)
Q Consensus 455 ~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~ 534 (784)
.-+...++ ......+.++.+.+.+.+.......
T Consensus 67 -------------~~~~~~~~----------------------------------~~~~~~~~l~~~~~~i~~~~~~~~~ 99 (355)
T PF05147_consen 67 -------------SYLSKRLG----------------------------------DEKYIEELLKRILNIIENSISNDSN 99 (355)
T ss_dssp -------------HHHCCCTC----------------------------------HHHHHHHHHHHHHHCHHHHHHCT--
T ss_pred -------------HHHHHhcc----------------------------------chHHHHHHHHHHHHHHHHhhhhccc
Confidence 11111100 1122234455554444433332221
Q ss_pred CCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC--CCeEEEEecCCC
Q 003940 535 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ--THRLQHSFRNGP 612 (784)
Q Consensus 535 P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~--~G~l~~~~~dg~ 612 (784)
...| ++..- +=++..+...++.+++ +.+++.+.+..+.|.+....-. .-.+...+. ..
T Consensus 100 ~~~D--~l~G~-aGi~~~ll~~~~~~~~----------------~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~-~~ 159 (355)
T PF05147_consen 100 NDYD--LLSGL-AGIGLYLLSLYEKTKD----------------PKYLDIIEKILEKLLESIINDDPSENQIGSEWK-EG 159 (355)
T ss_dssp GGCS--TTTSH-HHHHHHHCCHHHHHCC----------------HHS-HHHHHHHHHCCCHHCCCHTCCGSSSHHCH-TT
T ss_pred ccch--hhccc-HHHHHHHHHHHhhccc----------------hHHHHHHHHHHHHHHHHHhhcccccCCCccccC-CC
Confidence 1111 22222 3335666667777655 6788888888888876654310 000000011 11
Q ss_pred CCCCCCcchHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhH
Q 003940 613 SKAPGFLDDYAFLISGLLDLY-EFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS 691 (784)
Q Consensus 613 ~~~~~~leDyA~li~aLL~LY-eaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns 691 (784)
....++..+.+=.+.+|+.+| +.++++++++.++++.+...+++...+ ++|......... +. -.+--.|.+
T Consensus 160 ~~~~G~aHG~~Gi~~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~--~~~WC~G~~ 231 (355)
T PF05147_consen 160 FINLGFAHGIAGILYALLRLYKKGTKDPEYLKLIEQILNFLLKHFNTDD-GGWPDNRNNSNY-----KS--RPSWCYGSP 231 (355)
T ss_dssp BEE-STTTSHHHHHHHHCHCCHHT--HHHHHHCHHHHHHHHHHC--TGC-CT--SECTHHHH-----HC----SSSSSHH
T ss_pred CccCCccccHHHHHHHHHHhhhcccCchhHHHHHHHHHHHHHHhcCccc-CCCCCCCCcccc-----cc--ccccccCcH
Confidence 223588888999999999999 699999999999999999988875433 445543321100 00 122345667
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003940 692 VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (784)
Q Consensus 692 v~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~ 725 (784)
=++.++.+++..+++ +.+.+.+++++.....
T Consensus 232 Gi~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 262 (355)
T PF05147_consen 232 GILLALLKAYKILDD---EEYDEEAEQALESILQ 262 (355)
T ss_dssp HHHHHHHHHHHHCT----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhch---HHHHHHHHHHHHHHHH
Confidence 788888999999864 7899999888877655
No 170
>PTZ00470 glycoside hydrolase family 47 protein; Provisional
Probab=95.80 E-value=0.051 Score=63.70 Aligned_cols=99 Identities=13% Similarity=0.106 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCC-CCCccccccccCCCCCCCChhHHHHHHHHHH
Q 003940 622 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTG-EDPSVLLRVKEDHDGAEPSGNSVSVINLVRL 700 (784)
Q Consensus 622 yA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~-~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL 700 (784)
..=.+-|||.+|++|+|+.||++|++|.+.+..-| |..+|-=+..-. .......... ....+..+.-+.+...+.+|
T Consensus 157 tIR~LGGLLSAy~Ls~d~~lL~kA~dLgd~Ll~AF-dTptgiP~~~vnl~~g~~~~~~~-~~~~~~lAe~gSl~LEF~~L 234 (522)
T PTZ00470 157 TIRVLGGLLSAYDLTGDEMYLEKAREIADRLLPAF-NEDTGFPASEINLATGRKSYPGW-AGGCSILSEVGTLQLEFNYL 234 (522)
T ss_pred ehhhHhHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-cCCCCCCcceeecccCCCCCccc-CCCccchhhhhhHHHHHHHH
Confidence 34458899999999999999999999999999988 655552111100 0000000000 01233344555667778999
Q ss_pred HHHhCCCCchHHHHHHHHHHHHHHH
Q 003940 701 ASIVAGSKSDYYRQNAEHSLAVFET 725 (784)
Q Consensus 701 ~~lt~~~~~~~y~e~A~~~l~~~~~ 725 (784)
+++||+ +.|.+.|+++.+.+..
T Consensus 235 S~lTGd---~kY~~~a~~i~~~l~~ 256 (522)
T PTZ00470 235 SEITGD---PKYAEYVDKVMDALFS 256 (522)
T ss_pred HHhhCC---HHHHHHHHHHHHHHHh
Confidence 999996 8999999999988864
No 171
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=95.77 E-value=0.037 Score=55.20 Aligned_cols=82 Identities=9% Similarity=-0.004 Sum_probs=47.2
Q ss_pred HhhcCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHH------------------
Q 003940 134 ARKRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT------------------ 193 (784)
Q Consensus 134 Ak~e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~------------------ 193 (784)
..-.||+|+|.|+ ++||+.|..--. .|+ ++.+.+. +++..|-|..+.... .+.+.+
T Consensus 25 ~~~~Gk~vvl~F~~~~~c~~C~~~l~-~l~--~~~~~~~~~~v~vv~Is~d~~~~-~~~~~~~~~~~~~~~~~~f~~l~D 100 (173)
T cd03015 25 SDYKGKWVVLFFYPLDFTFVCPTEII-AFS--DRYEEFKKLNAEVLGVSTDSHFS-HLAWRNTPRKEGGLGKINFPLLAD 100 (173)
T ss_pred HHhCCCEEEEEEECCCCCCcCHHHHH-HHH--HHHHHHHHCCCEEEEEecCCHHH-HHHHHHhhhhhCCccCcceeEEEC
Confidence 3335899999999 899999997322 232 3333443 345555554432111 111111
Q ss_pred ----HHHHhcCCC------CCCcEEEECCCCceeccc
Q 003940 194 ----YVQALYGGG------GWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 194 ----~~q~~~g~~------G~P~~vfl~pdg~pi~~~ 220 (784)
..+. +|+. ++|+++++|++|++.+..
T Consensus 101 ~~~~~~~~-~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 101 PKKKISRD-YGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred CchhHHHH-hCCccccCCceeeEEEEECCCCeEEEEE
Confidence 1111 2432 578999999999988763
No 172
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.72 E-value=0.046 Score=47.08 Aligned_cols=64 Identities=23% Similarity=0.315 Sum_probs=40.1
Q ss_pred EEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 143 l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+.|+.+||++|+.+.+ +.+.++-.|..+.+|.++... .+....+..+|..++|.. |++ |+.+.+
T Consensus 3 ~~y~~~~Cp~C~~~~~-------~l~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~g~~~~P~v-~~~--g~~igg 66 (82)
T cd03419 3 VVFSKSYCPYCKRAKS-------LLKELGVKPAVVELDQHEDGS---EIQDYLQELTGQRTVPNV-FIG--GKFIGG 66 (82)
T ss_pred EEEEcCCCHHHHHHHH-------HHHHcCCCcEEEEEeCCCChH---HHHHHHHHHhCCCCCCeE-EEC--CEEEcC
Confidence 6788999999999863 333344467777777765421 122223345588899996 554 555543
No 173
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=95.69 E-value=0.062 Score=54.62 Aligned_cols=96 Identities=13% Similarity=-0.009 Sum_probs=52.0
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHH-hcccEEEEEcCCCCccHHHHHH-------------------HHH
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYM-------------------TYV 195 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~l-n~~FV~VkvD~ee~pdi~~~y~-------------------~~~ 195 (784)
.||+++|.|+ ++||+.|..- --.|+ +..+.+ ++++..|-|..+. +...+.|. ...
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~e-l~~l~--~~~~~~~~~gv~vi~VS~D~-~~~~~~~~~~~~~~~~l~fpllsD~~~~~a 105 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTE-LEDLA--DKYAELKKLGVEVYSVSTDT-HFVHKAWHDTSEAIGKITYPMLGDPTGVLT 105 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHH-HHHHH--HHHHHHHhcCCcEEEEeCCC-HHHHHHHHhhhhhccCcceeEEECCccHHH
Confidence 5899999999 9999999973 22332 232333 2344344333332 11111110 111
Q ss_pred HHhcCCC------CCCcEEEECCCCceeccccc-cCCCCCCCcchHHHHHHHHH
Q 003940 196 QALYGGG------GWPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 196 q~~~g~~------G~P~~vfl~pdg~pi~~~tY-~p~~~~~~~~~f~~~L~~i~ 242 (784)
. .+|+. +.|.++++|++|++.+.... .++. ....++|+.|.
T Consensus 106 ~-~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~-----~~~~~ll~~l~ 153 (187)
T TIGR03137 106 R-NFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIG-----RDASELLRKIK 153 (187)
T ss_pred H-HhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCC-----CCHHHHHHHHH
Confidence 1 12432 35999999999999876422 2222 24666666553
No 174
>PTZ00256 glutathione peroxidase; Provisional
Probab=95.62 E-value=0.022 Score=57.69 Aligned_cols=21 Identities=5% Similarity=-0.020 Sum_probs=15.6
Q ss_pred hhcCCcEE-EEEcccCChhhhh
Q 003940 135 RKRDVPIF-LSIGYSTCHWCHV 155 (784)
Q Consensus 135 k~e~KpI~-l~~~~~wC~wC~~ 155 (784)
.-.||+|+ +.+.++||+.|..
T Consensus 37 ~~~Gk~vvlv~n~atwCp~C~~ 58 (183)
T PTZ00256 37 KFKGKKAIIVVNVACKCGLTSD 58 (183)
T ss_pred HhCCCcEEEEEEECCCCCchHH
Confidence 33589764 4448999999996
No 175
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=95.56 E-value=0.021 Score=55.16 Aligned_cols=52 Identities=12% Similarity=0.075 Sum_probs=40.5
Q ss_pred HHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccc-cccC
Q 003940 164 EGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG-TYFP 224 (784)
Q Consensus 164 ~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~~-tY~p 224 (784)
+++++.+.. .+..+|||+++.+++...| |+.|+|+.+|+ .+|+++... ++.|
T Consensus 59 eELa~e~~~~~v~~akVDiD~~~~LA~~f--------gV~siPTLl~F-kdGk~v~~i~G~~~ 112 (132)
T PRK11509 59 GELLREFPDYTWQVAIADLEQSEAIGDRF--------GVFRFPATLVF-TGGNYRGVLNGIHP 112 (132)
T ss_pred HHHHHHhcCCceEEEEEECCCCHHHHHHc--------CCccCCEEEEE-ECCEEEEEEeCcCC
Confidence 355666652 4789999999999999888 99999999988 678888653 4445
No 176
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=95.55 E-value=0.094 Score=58.73 Aligned_cols=111 Identities=21% Similarity=0.268 Sum_probs=80.4
Q ss_pred cccc-chHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003940 122 DWFA-WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (784)
Q Consensus 122 ~W~~-~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g 200 (784)
.|.. ..++|++.||+.++..+|+|..+ -.--.+|++-+|.|..|.+.+...||.|||+....-. ..|+. ++-
T Consensus 2 lwfkGnipeAIa~aK~kkalfVVyI~gd-dE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa--~qFs~----IYp 74 (506)
T KOG2507|consen 2 LWFKGNIPEAIAEAKGKKALFVVYISGD-DEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAA--TQFSA----IYP 74 (506)
T ss_pred cccccchHHHHHHhhcCCeEEEEEEecC-chHhhHHhhccchhhhhhhhhhcceEEEEeccCchhh--hhhhh----hcc
Confidence 3554 36899999988776655556554 4556889999999999999999999999999865321 11221 236
Q ss_pred CCCCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHHHHhh
Q 003940 201 GGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDK 247 (784)
Q Consensus 201 ~~G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~ 247 (784)
..-+|...|+.-.|.|+...+.+-. --++-.+|.+.|..
T Consensus 75 ~v~vPs~ffIg~sGtpLevitg~v~--------adeL~~~i~Kv~~~ 113 (506)
T KOG2507|consen 75 YVSVPSIFFIGFSGTPLEVITGFVT--------ADELASSIEKVWLG 113 (506)
T ss_pred cccccceeeecCCCceeEEeecccc--------HHHHHHHHHHHHHH
Confidence 6789999999999999987653332 22566777777763
No 177
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=95.52 E-value=0.043 Score=54.72 Aligned_cols=98 Identities=18% Similarity=0.117 Sum_probs=53.3
Q ss_pred cCCcEEEEEcccC-ChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHH----------------HHHHhc
Q 003940 137 RDVPIFLSIGYST-CHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMT----------------YVQALY 199 (784)
Q Consensus 137 e~KpI~l~~~~~w-C~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~----------------~~q~~~ 199 (784)
.||+|+|.|+++| |+.|..--. .|+ +..+.+ +++..|-|..+. |...+.|.+ .....+
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~-~l~--~~~~~~-~~~~vv~vs~D~-~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~ 117 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVR-KFN--QEAAEL-DNTVVLCISADL-PFAQKRFCGAEGLENVITLSDFRDHSFGKAY 117 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHH-HHH--HHHHHc-CCcEEEEEeCCC-HHHHHHHHHhCCCCCceEeecCCccHHHHHh
Confidence 5899999999999 999997432 222 122222 234444443332 111111211 011123
Q ss_pred CCCCCC---------cEEEECCCCceeccccccCCCCCCCcchHHHHHHHHH
Q 003940 200 GGGGWP---------LSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 200 g~~G~P---------~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
|+.+.| +++++|++|++.+...+-... ..+.+-++|+.++
T Consensus 118 gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~---~~~~~~~~l~~l~ 166 (167)
T PRK00522 118 GVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEIT---NEPDYDAALAALK 166 (167)
T ss_pred CCeecccccCCceeeEEEEECCCCeEEEEEECCCcC---CCCCHHHHHHHhh
Confidence 555555 999999999998864221111 2356777777654
No 178
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.38 E-value=0.038 Score=48.35 Aligned_cols=64 Identities=16% Similarity=0.249 Sum_probs=40.7
Q ss_pred CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~e-e~pdi~~~y~~~~q~~~g~~G~P~~vfl 210 (784)
++++++.|+++||+.|+.+.. .+ .++++..+.....+.+|.. ..+++...|.. ....+|+.++.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~-~l--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~p~~~~~ 96 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAP-LL--EELAEEYGGDVEVVAVNVDDENPDLAAEFGV------AVRSIPTLLLF 96 (127)
T ss_pred CceEEEEEEcCcCHHHHhhch-hH--HHHHHHhcCCcEEEEEECCCCChHHHHHHhh------hhccCCeEEEE
Confidence 899999999999999999832 11 1333333333566677775 55666655521 14466877633
No 179
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=95.37 E-value=0.033 Score=53.36 Aligned_cols=93 Identities=17% Similarity=0.133 Sum_probs=49.0
Q ss_pred cCCcEEEEEcccC-ChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHH---------------H-HHHHHhc
Q 003940 137 RDVPIFLSIGYST-CHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVY---------------M-TYVQALY 199 (784)
Q Consensus 137 e~KpI~l~~~~~w-C~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y---------------~-~~~q~~~ 199 (784)
.||+++|.|++.| |..|+.--. .|+ +..+.. +++..|-|..+. +...+.+ . ......+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~-~l~--~~~~~~-~~~~vi~Is~d~-~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~ 99 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTK-RFN--KEAAKL-DNTVVLTISADL-PFAQKRWCGAEGVDNVTTLSDFRDHSFGKAY 99 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHH-HHH--HHHHhc-CCCEEEEEECCC-HHHHHHHHHhcCCCCceEeecCcccHHHHHh
Confidence 5899999999998 699997432 232 222222 244444443331 1100000 0 1111112
Q ss_pred CCC----C--CCcEEEECCCCceeccc-cccCCCCCCCcchHHHHH
Q 003940 200 GGG----G--WPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTIL 238 (784)
Q Consensus 200 g~~----G--~P~~vfl~pdg~pi~~~-tY~p~~~~~~~~~f~~~L 238 (784)
|+. | .|++++++++|++++.. ++-+.. .|.+-++|
T Consensus 100 gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~----~~~~~~~~ 141 (143)
T cd03014 100 GVLIKDLGLLARAVFVIDENGKVIYVELVPEITD----EPDYEAAL 141 (143)
T ss_pred CCeeccCCccceEEEEEcCCCeEEEEEECCCccc----CCCHHHHh
Confidence 432 2 68999999999998864 233222 35666655
No 180
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=95.33 E-value=0.052 Score=44.94 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=36.8
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
++.|+.+||+.|+.+.. .++. .+-.|. .+|.+..+...+.+ +.+.+.+++|+.++ +|+.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~-~l~~------~~i~~~--~~~i~~~~~~~~~~----~~~~~~~~vP~i~~---~~~~i~g 63 (73)
T cd02976 2 VTVYTKPDCPYCKATKR-FLDE------RGIPFE--EVDVDEDPEALEEL----KKLNGYRSVPVVVI---GDEHLSG 63 (73)
T ss_pred EEEEeCCCChhHHHHHH-HHHH------CCCCeE--EEeCCCCHHHHHHH----HHHcCCcccCEEEE---CCEEEec
Confidence 46789999999998753 2221 222344 44555445444333 23347789999875 4455544
No 181
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=95.24 E-value=3.3 Score=50.15 Aligned_cols=60 Identities=18% Similarity=0.280 Sum_probs=44.2
Q ss_pred CCeEEEEec-CCCCCCCCCchhHHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHhccCCCCceee
Q 003940 358 GGGFHRYSV-DERWHVPHFEKMLYDQGQLANVYLDAFSLTK--DVFYSYICRDILDYLRRDMIGPGGEIFS 425 (784)
Q Consensus 358 ~GGF~RYsv-D~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~--d~~y~~~A~~t~~fl~~~m~~~~Ggfys 425 (784)
.||+- |+. +..|.+.. |.|..+.+++.+....+ ++.+.++++++++||++ |++++|||.+
T Consensus 359 ~GGW~-fs~~~~~~pd~d------~Ta~~l~AL~~~~~~~~~~~~~~~~~i~~Av~wLl~-~Qn~dGgf~~ 421 (634)
T cd02892 359 KGGWA-FSTANQGYPDSD------DTAEALKALLRLQELPPFGEKVSRERLYDAVDWLLG-MQNSNGGFAA 421 (634)
T ss_pred CCCCC-CCCCCCCCCCcC------chHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHh-ccCCCCCEee
Confidence 56664 553 34444442 68889999888776653 56788999999999996 7899999854
No 182
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein. This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs.
Probab=95.15 E-value=0.36 Score=53.50 Aligned_cols=78 Identities=21% Similarity=0.204 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHH
Q 003940 550 ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGL 629 (784)
Q Consensus 550 I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li~aL 629 (784)
+.+|..+++++++ +++.+.|+++.+.+.+.-.-..+.++-| +.+=.+.+|
T Consensus 230 ~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~g~~~~~~~lCH--------------G~~G~~~~l 279 (343)
T cd04794 230 VYLLAKAYLVFKE----------------EQYLEAAIKCGELIWKRGLLKKGPGLCH--------------GIAGNAYAF 279 (343)
T ss_pred HHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhCCccCCCcccc--------------CccchHHHH
Confidence 4467788888887 7899999998887653211101112222 223347899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 003940 630 LDLYEFGSGTKWLVWAIELQNTQDELFL 657 (784)
Q Consensus 630 L~LYeaTgd~~yL~~A~~L~~~~~~~F~ 657 (784)
+.+|+.|++++|+++|..+.+.+.+...
T Consensus 280 L~~~~~~~~~~~~~~a~~~~~~~~~~~~ 307 (343)
T cd04794 280 LLLYRLTGDLKYLYRACKFAEFLINYGF 307 (343)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999998877643
No 183
>PLN02175 endoglucanase
Probab=95.15 E-value=0.51 Score=54.94 Aligned_cols=86 Identities=10% Similarity=0.057 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CCCCCCCcchHHHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSKAPGFLDDYAFL 625 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg-~~~~~~~leDyA~l 625 (784)
+-+..|||.+++++++. +..| ..++|+.|+++.+|..++- |.+..+...+ .+.........=.+
T Consensus 172 ae~AAALAaaS~vfk~~--D~~Y--------A~~lL~~Ak~ly~fA~~~~-----g~y~~~~~~~~~~~Y~s~s~y~DEl 236 (484)
T PLN02175 172 AETAAALAAASMVFRKV--DSKY--------SRLLLATAKKVMQFAIQYR-----GAYSDSLSSSVCPFYCSYSGYKDEL 236 (484)
T ss_pred HHHHHHHHHHHHHhccc--CHHH--------HHHHHHHHHHHHHHHHhCC-----CCcccCccccccCccccCCCccHHH
Confidence 77889999999999862 1122 1467999999999998741 2221110000 01011111123456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 003940 626 ISGLLDLYEFGSGTKWLVWAIE 647 (784)
Q Consensus 626 i~aLL~LYeaTgd~~yL~~A~~ 647 (784)
+.|.+.||.+|||..|++.+..
T Consensus 237 ~WAAawLY~ATgd~~Yl~~~~~ 258 (484)
T PLN02175 237 MWGASWLLRATNDPYYANFIKS 258 (484)
T ss_pred HHHHHHHHHHhCCHHHHHHHHH
Confidence 8899999999999999987654
No 184
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.13 E-value=0.056 Score=45.70 Aligned_cols=63 Identities=19% Similarity=0.199 Sum_probs=38.2
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhc-CCCCCCcEEEECCCCceecc
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY-GGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~-g~~G~P~~vfl~pdg~pi~~ 219 (784)
++.|+++||+.|+.+.. . .+.+.-.|. .+|.++.+.....+ ..++ +..++|+.+ + .+|+++..
T Consensus 2 v~ly~~~~C~~C~~~~~-~------L~~~~~~~~--~idi~~~~~~~~~~----~~~~~~~~~vP~i~-~-~~g~~l~~ 65 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMR-T------LDKLGAAYE--WVDIEEDEGAADRV----VSVNNGNMTVPTVK-F-ADGSFLTN 65 (77)
T ss_pred EEEEECCCChhHHHHHH-H------HHHcCCceE--EEeCcCCHhHHHHH----HHHhCCCceeCEEE-E-CCCeEecC
Confidence 45789999999999864 2 222332343 46666655544333 2233 778999863 3 46676654
No 185
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.02 Score=64.51 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=50.9
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh--cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln--~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~ 211 (784)
.+..+++.||.|+++||+.|++|+.+..+ ++..+. ......++|.+..+.+...+ ++.++|+.+|+-
T Consensus 158 ~~~~~~~~lv~f~aPwc~~ck~l~~~~~~---~a~~~~~~~~v~~~~~d~~~~~~~~~~~--------~v~~~Pt~~~f~ 226 (383)
T KOG0191|consen 158 VKDSDADWLVEFYAPWCGHCKKLAPEWEK---LAKLLKSKENVELGKIDATVHKSLASRL--------EVRGYPTLKLFP 226 (383)
T ss_pred hhccCcceEEEEeccccHHhhhcChHHHH---HHHHhccCcceEEEeeccchHHHHhhhh--------cccCCceEEEec
Confidence 45668889999999999999999764443 444453 45666778877444444433 788999998776
Q ss_pred CCCc
Q 003940 212 PDLK 215 (784)
Q Consensus 212 pdg~ 215 (784)
++.+
T Consensus 227 ~~~~ 230 (383)
T KOG0191|consen 227 PGEE 230 (383)
T ss_pred CCCc
Confidence 6555
No 186
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=94.91 E-value=0.056 Score=51.16 Aligned_cols=79 Identities=14% Similarity=0.046 Sum_probs=44.1
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHHH---------------HHHhc
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY---------------VQALY 199 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~~---------------~q~~~ 199 (784)
.+|+++|.|+ +.||..|.....+. .++.+.++ +++..|-|..+ .++..+.|.+. +....
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l---~~~~~~~~~~~~~~i~is~d-~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 96 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAF---RDLAEEFAKGGAEVLGVSVD-SPFSHKAWAEKEGGLNFPLLSDPDGEFAKAY 96 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHH---HHHHHHHHHCCCEEEEEeCC-CHHHHHHHHhcccCCCceEEECCChHHHHHc
Confidence 6899999998 78999999864422 23444443 33444444332 22222222211 11112
Q ss_pred CCC---------CCCcEEEECCCCceecc
Q 003940 200 GGG---------GWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 200 g~~---------G~P~~vfl~pdg~pi~~ 219 (784)
|.. .+|++++++++|+.++.
T Consensus 97 g~~~~~~~~~~~~~p~~~lid~~g~i~~~ 125 (140)
T cd02971 97 GVLIEKSAGGGLAARATFIIDPDGKIRYV 125 (140)
T ss_pred CCccccccccCceeEEEEEECCCCcEEEE
Confidence 333 23578888888888776
No 187
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=94.88 E-value=2.5 Score=50.88 Aligned_cols=154 Identities=11% Similarity=0.092 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHH
Q 003940 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAF 624 (784)
Q Consensus 545 WNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~ 624 (784)
=++++..||..|+++....... .....|.+.|.++.+.+.+++|+++.|.|.+.+.+... ...+ |-+.
T Consensus 415 t~a~~~aAL~~aa~lA~~lGd~---------~~a~~~~~~Ad~ik~~i~~~~w~~~~g~F~~~~~~~~~--~~~v-DaSl 482 (616)
T TIGR01577 415 TASAVYGGLDAAAAVADKLGEK---------RLAQNWKKAAEFIKRAVEERFWLPERQVFAKGIKLMVL--DKTI-DISI 482 (616)
T ss_pred cHHHHHHHHHHHHHHHHHcCCh---------HHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeecCCCC--CCcc-cHHH
Confidence 3677777777776654321000 01267999999999999999999876777765542211 1112 2332
Q ss_pred HHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCC--hhHHHHHHHHHHH
Q 003940 625 LISGL-LDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS--GNSVSVINLVRLA 701 (784)
Q Consensus 625 li~aL-L~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS--~Nsv~a~~L~rL~ 701 (784)
+...+ ..+. --.|++.+.. .+.+.+.+..+.+||++....+ .+.+..|. ...-+|+.+.+++
T Consensus 483 L~l~~~~g~l-~~~Dpr~v~T----v~~I~~~L~~~~~ggi~RY~~D----------~y~~g~~w~i~T~wla~~~~~~g 547 (616)
T TIGR01577 483 LGISVPFNLI-APDDERMVKM----AEAIEKHLTSPIVGGIKRYEND----------PYVGGNPWILTTLWLSQLYIKQG 547 (616)
T ss_pred HhHHHhcCCC-CCCChHHHHH----HHHHHHHhcccCCCeeeCCCCC----------CCCCCCcHHHHHHHHHHHHHHhc
Confidence 22111 1111 1235555543 4444444554445555432221 11111221 1223666677766
Q ss_pred HHhCCC---CchHHHHHHHHHHHHHHH
Q 003940 702 SIVAGS---KSDYYRQNAEHSLAVFET 725 (784)
Q Consensus 702 ~lt~~~---~~~~y~e~A~~~l~~~~~ 725 (784)
+..... ....+.+.|+++++.+..
T Consensus 548 ~~~~~~~~~~~~~~~~~A~~ll~~~~~ 574 (616)
T TIGR01577 548 RILKALNHNGADIYLQKSKKLLKWVMD 574 (616)
T ss_pred ccccccccchhhhHHHHHHHHHHHHHh
Confidence 654210 013567788888877654
No 188
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.86 E-value=0.09 Score=56.17 Aligned_cols=28 Identities=14% Similarity=0.082 Sum_probs=23.0
Q ss_pred cCCCCCCcEEEECCCCceeccccccCCC
Q 003940 199 YGGGGWPLSVFLSPDLKPLMGGTYFPPE 226 (784)
Q Consensus 199 ~g~~G~P~~vfl~pdg~pi~~~tY~p~~ 226 (784)
.|+.|+|++|+.|.+|++....+|.|++
T Consensus 215 lGv~GTPaiv~~d~~G~~~~v~G~~~~~ 242 (251)
T PRK11657 215 LGANATPAIYYMDKDGTLQQVVGLPDPA 242 (251)
T ss_pred cCCCCCCEEEEECCCCCEEEecCCCCHH
Confidence 4899999999999999876556677755
No 189
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase. Lanthinoine is a lantibiotic, a unique class of peptide antibiotics. They are ribosomally synthesized as precursor peptides and then post-translationally modified to contain thioether cross-links called lanthionines (Lans) or methyllanthionines (MeLans) in addition to 2,3-didehydroalanine (Dha) and (Z)-2,3-didehydrobutyrine (Dhb). These unusual amino acids are introduced by the dehydration of serine and threonine residues, followed by thioether formation via addition of cysteine thiols, catalysed by LanB and LanC or LanM. LanC, the cyclase component, is a zinc metalloprotein, whose bound metal has been proposed to activate the thiol substrate for nucleophilic addition.
Probab=94.72 E-value=1.3 Score=49.75 Aligned_cols=84 Identities=15% Similarity=0.038 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li 626 (784)
+=++.++..+++++++ +.+.+.|.++.+.+...... .+ ......+..+.+=.+
T Consensus 247 ~Gi~~~l~~~~~~~~~----------------~~~~~~a~~~~~~~~~~~~~--~~---------~~~~~~lChG~~G~~ 299 (382)
T cd04793 247 PGIARALQLAGKALDD----------------QKLQEAAEKILKAALKDKKQ--LS---------KLISPTLCHGLAGLL 299 (382)
T ss_pred HHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHhChhh--hc---------cCCCCCcCccHHHHH
Confidence 3346677788888887 78999999988776643211 00 112346666778888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 003940 627 SGLLDLYEFGSGTKWLVWAIELQNTQDELFL 657 (784)
Q Consensus 627 ~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~ 657 (784)
..|+.+|+.|++++|++.|..+.+.+...+-
T Consensus 300 ~~l~~~~~~~~~~~~~~~a~~~~~~~l~~~~ 330 (382)
T cd04793 300 FIFYLLYKDTNTNEFKSALEYLLNQIISSYS 330 (382)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999988764
No 190
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=94.41 E-value=0.43 Score=50.91 Aligned_cols=155 Identities=18% Similarity=0.264 Sum_probs=94.3
Q ss_pred hhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCC----------ChHHHHHHHHHHHHHHHHhcc
Q 003940 528 VRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGS----------DRKEYMEVAESAASFIRRHLY 597 (784)
Q Consensus 528 ~R~~R~~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~----------~~~~yle~A~~~a~~l~~~l~ 597 (784)
.|..|..|-+.+.|.+.||-.+--++.-=.+ ..-||.|.-|- +..++|+.|-++++|+.+.+.
T Consensus 111 vr~~~alp~l~~~~v~Gw~D~~gGg~pWR~q-------~~f~N~P~NgPa~I~~ar~~~~~~krL~~AMK~~dWi~~~Li 183 (377)
T COG4833 111 VRRRRALPKLTNQFVEGWVDEDGGGIPWRKQ-------DQFFNAPANGPAGIFLARYPDQYGKRLKRAMKMADWIDRTLI 183 (377)
T ss_pred eeccccchhHHHhhhhccccccCCccccccc-------ceeecCCCCCcceEEEeechHHHHHHHHHHHHHHHHHHhhcc
Confidence 5566777888888888888776443322111 01233332210 124699999999999999999
Q ss_pred ccCCCeEEEE---ecCCCCCC-CCCcchHHHH--HHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhccccCCCccccc-CC
Q 003940 598 DEQTHRLQHS---FRNGPSKA-PGFLDDYAFL--ISGLLDLYE-FGSGTKWLVWAIELQNTQDELFLDREGGGYFNT-TG 669 (784)
Q Consensus 598 d~~~G~l~~~---~~dg~~~~-~~~leDyA~l--i~aLL~LYe-aTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t-~~ 669 (784)
|++ |..+.- -.+|+... ..+++-+... +++-|.||+ .+...+|+..+.++.....++... -|-+-+. .+
T Consensus 184 d~D-GlV~DGi~~ledGt~lvr~~~tYcQGV~IGle~~L~Lr~~~a~~A~Y~a~~h~~vaav~~~mT~--~Gv~~~e~gg 260 (377)
T COG4833 184 DPD-GLVFDGIKALEDGTSLVRAQYTYCQGVVIGLETELALRTGPAARARYCARVHRLVAAVNEHMTP--LGVLRGEAGG 260 (377)
T ss_pred CCC-cchhhhhhhhccCchhheeeccccceeEeechhhhhhhcCchHHHHHHHHHHHHHHHHHHhcCc--cceeecCCCC
Confidence 974 433321 12444322 2444444444 448899999 788889999999999999888742 2333221 22
Q ss_pred CCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCC
Q 003940 670 EDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (784)
Q Consensus 670 ~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~ 706 (784)
.++.+. .++.+.-|..+..-+.+
T Consensus 261 GDgGLF--------------KGI~~RYlaDva~~lp~ 283 (377)
T COG4833 261 GDGGLF--------------KGITARYLADVATTLPG 283 (377)
T ss_pred Cccchh--------------hhHHHHHHHHHHHhcCC
Confidence 222221 24667777777766655
No 191
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=94.41 E-value=0.096 Score=50.26 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=43.8
Q ss_pred HhhcC-CcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHHH----------------
Q 003940 134 ARKRD-VPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY---------------- 194 (784)
Q Consensus 134 Ak~e~-KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~~---------------- 194 (784)
..-.+ |+++|.|+ +.||..|..- -..++ ++.+.+. +++..|-|..+. ++..+.|.+.
T Consensus 23 ~~~~g~k~~vl~f~~~~~c~~C~~~-~~~l~--~~~~~~~~~~v~vi~vs~d~-~~~~~~~~~~~~~~~~~~~D~~~~~~ 98 (149)
T cd03018 23 SEFRGRKPVVLVFFPLAFTPVCTKE-LCALR--DSLELFEAAGAEVLGISVDS-PFSLRAWAEENGLTFPLLSDFWPHGE 98 (149)
T ss_pred HHHcCCCeEEEEEeCCCCCccHHHH-HHHHH--HHHHHHHhCCCEEEEecCCC-HHHHHHHHHhcCCCceEecCCCchhH
Confidence 33345 88888876 9999999853 22332 4444443 244444444332 2222222110
Q ss_pred HHHhcCCC----CC--CcEEEECCCCceecc
Q 003940 195 VQALYGGG----GW--PLSVFLSPDLKPLMG 219 (784)
Q Consensus 195 ~q~~~g~~----G~--P~~vfl~pdg~pi~~ 219 (784)
....+|.. |. |+++++|++|++.+.
T Consensus 99 ~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~ 129 (149)
T cd03018 99 VAKAYGVFDEDLGVAERAVFVIDRDGIIRYA 129 (149)
T ss_pred HHHHhCCccccCCCccceEEEECCCCEEEEE
Confidence 11112333 33 488999999998875
No 192
>PRK15000 peroxidase; Provisional
Probab=94.21 E-value=0.13 Score=53.14 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=54.6
Q ss_pred cCCcEEEEEcc-cCChhhhhhhhcccCCHHHHHHH-hcccEEEEEcCCCCccHHHHHHH---------------------
Q 003940 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMT--------------------- 193 (784)
Q Consensus 137 e~KpI~l~~~~-~wC~wC~~Me~etf~d~eVa~~l-n~~FV~VkvD~ee~pdi~~~y~~--------------------- 193 (784)
.||+|+|.|+. +||..|.. |-..|+ +..+.+ ++++..|-|..+. +...+.+.+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~-El~~l~--~~~~~f~~~g~~vigvS~D~-~~~~~~w~~~~~~~~g~~~i~fpllsD~~~ 108 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPS-ELIAFD--KRYEEFQKRGVEVVGVSFDS-EFVHNAWRNTPVDKGGIGPVKYAMVADVKR 108 (200)
T ss_pred CCCEEEEEEECCCCCCCCHH-HHHHHH--HHHHHHHHCCCEEEEEECCC-HHHHHHHHhhHHHhCCccccCceEEECCCc
Confidence 58999999999 69999998 333444 222223 2345444444332 111111100
Q ss_pred HHHHhcCCC------CCCcEEEECCCCceeccccc-cCCCCCCCcchHHHHHHHHH
Q 003940 194 YVQALYGGG------GWPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 194 ~~q~~~g~~------G~P~~vfl~pdg~pi~~~tY-~p~~~~~~~~~f~~~L~~i~ 242 (784)
.....+|+. +.|.++++||+|++.+...+ .|.. ..+-++|+.+.
T Consensus 109 ~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~g-----r~~~eilr~l~ 159 (200)
T PRK15000 109 EIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLG-----RNIDEMLRMVD 159 (200)
T ss_pred HHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCC-----CCHHHHHHHHH
Confidence 011112443 68999999999999886433 3332 25777776654
No 193
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.21 E-value=0.13 Score=47.73 Aligned_cols=67 Identities=18% Similarity=0.265 Sum_probs=45.7
Q ss_pred HHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003940 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (784)
Q Consensus 131 l~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vf 209 (784)
...+-++++ | |.|.-+||.+||.+ ++.|.+ ++-++..|.+|..++.. ..+.++..++|+...|..++
T Consensus 7 v~~~i~~~~-V-VifSKs~C~~c~~~-k~ll~~------~~v~~~vvELD~~~~g~---eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 7 VRKMISENP-V-VIFSKSSCPYCHRA-KELLSD------LGVNPKVVELDEDEDGS---EIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHhhcCC-E-EEEECCcCchHHHH-HHHHHh------CCCCCEEEEccCCCCcH---HHHHHHHHhcCCCCCCEEEE
Confidence 444555555 3 45677999999995 567776 66689999999886653 23344445678888897554
No 194
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=94.15 E-value=0.24 Score=47.66 Aligned_cols=99 Identities=22% Similarity=0.283 Sum_probs=65.3
Q ss_pred HHHHH--hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 130 AFAEA--RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 130 al~~A--k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
++.+| .+++|.|+|-||-+|=+.|..|++ ++. .+++.+.+-.+..-||+++-|+..+.| ... -|.+
T Consensus 10 ~VDqAI~~e~drvvViRFG~d~d~~Cm~mDe-iL~--~~a~~v~~~a~IY~vDi~~Vpdfn~~y--------el~-dP~t 77 (133)
T PF02966_consen 10 HVDQAILSEEDRVVVIRFGRDWDPVCMQMDE-ILY--KIAEKVKNFAVIYLVDIDEVPDFNQMY--------ELY-DPCT 77 (133)
T ss_dssp HHHHHHHH-SSSEEEEEEE-TTSHHHHHHHH-HHH--HHHHHHTTTEEEEEEETTTTHCCHHHT--------TS--SSEE
T ss_pred hHHHHHhccCceEEEEEeCCCCCccHHHHHH-HHH--HHHHHhhcceEEEEEEcccchhhhccc--------ccC-CCeE
Confidence 44555 578999999999999999999986 443 677788755666678999999988777 333 7887
Q ss_pred EEECCCCceecc--ccccCCCCC-----CCcchHHHHHHHHH
Q 003940 208 VFLSPDLKPLMG--GTYFPPEDK-----YGRPGFKTILRKVK 242 (784)
Q Consensus 208 vfl~pdg~pi~~--~tY~p~~~~-----~~~~~f~~~L~~i~ 242 (784)
|++==.++.+.- || +...+ .+++.|+++++.|-
T Consensus 78 vmFF~rnkhm~vD~Gt--gnnnKin~~~~~kqe~iDiie~iy 117 (133)
T PF02966_consen 78 VMFFFRNKHMMVDFGT--GNNNKINWAFEDKQEFIDIIETIY 117 (133)
T ss_dssp EEEEETTEEEEEESSS--SSSSSBCS--SCHHHHHHHHHHHH
T ss_pred EEEEecCeEEEEEecC--CCccEEEEEcCcHHHHHHHHHHHH
Confidence 776545555532 11 10000 12456777777654
No 195
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=93.82 E-value=0.25 Score=47.08 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=24.6
Q ss_pred cCCcEEEEE-cccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCC
Q 003940 137 RDVPIFLSI-GYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE 183 (784)
Q Consensus 137 e~KpI~l~~-~~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee 183 (784)
.+|+++|.| .+.||+.|+.--. .++ +..+.+. +++..|-|..+.
T Consensus 22 ~~~~~vl~f~~~~~Cp~C~~~~~-~l~--~~~~~~~~~~v~vv~V~~~~ 67 (149)
T cd02970 22 GEGPVVVVFYRGFGCPFCREYLR-ALS--KLLPELDALGVELVAVGPES 67 (149)
T ss_pred cCCCEEEEEECCCCChhHHHHHH-HHH--HHHHHHHhcCeEEEEEeCCC
Confidence 345655555 6999999997433 222 3333333 345556565543
No 196
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=93.80 E-value=0.061 Score=51.13 Aligned_cols=80 Identities=21% Similarity=0.209 Sum_probs=41.8
Q ss_pred HHHHHHHhhcCCcEEEEEcc-------cCChhhhhhhhcccCCHHHHHH---HhcccEEEEEcCCCCcc---HHHHHHHH
Q 003940 128 EEAFAEARKRDVPIFLSIGY-------STCHWCHVMEVESFEDEGVAKL---LNDWFVSIKVDREERPD---VDKVYMTY 194 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~-------~wC~wC~~Me~etf~d~eVa~~---ln~~FV~VkvD~ee~pd---i~~~y~~~ 194 (784)
.++++...+.+++|||.|.+ +||+.|..-+. -|.+. ..++.+.|.|.+..++. -...|.+-
T Consensus 9 ~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep------~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 9 EKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEP------VVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp HHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHH------HHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH-
T ss_pred HHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHH------HHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEc
Confidence 45555556788999999864 59999998764 33333 32345555554433322 12233220
Q ss_pred HHHhcCCCCCCcEEEECCCCc
Q 003940 195 VQALYGGGGWPLSVFLSPDLK 215 (784)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdg~ 215 (784)
-.....++||.+=+...++
T Consensus 83 --p~~~l~~IPTLi~~~~~~r 101 (119)
T PF06110_consen 83 --PDLKLKGIPTLIRWETGER 101 (119)
T ss_dssp ---CC---SSSEEEECTSS-E
T ss_pred --ceeeeeecceEEEECCCCc
Confidence 0136779999998876544
No 197
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=93.76 E-value=0.22 Score=52.54 Aligned_cols=25 Identities=16% Similarity=0.438 Sum_probs=21.6
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhc
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVE 159 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~e 159 (784)
..++|..++.|+-..|++||+++++
T Consensus 104 ~~~~k~~I~vFtDp~CpyCkkl~~~ 128 (232)
T PRK10877 104 APQEKHVITVFTDITCGYCHKLHEQ 128 (232)
T ss_pred CCCCCEEEEEEECCCChHHHHHHHH
Confidence 4568889999999999999999853
No 198
>PRK13190 putative peroxiredoxin; Provisional
Probab=93.74 E-value=0.16 Score=52.29 Aligned_cols=36 Identities=14% Similarity=0.029 Sum_probs=23.5
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHH
Q 003940 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 203 G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
+.|.++|++|+|++.+...|-.+.+ ..+-++|+.+.
T Consensus 116 ~~p~~fiId~~G~I~~~~~~~~~~g----r~~~ellr~l~ 151 (202)
T PRK13190 116 TVRGVFIIDPNQIVRWMIYYPAETG----RNIDEIIRITK 151 (202)
T ss_pred EEeEEEEECCCCEEEEEEEeCCCCC----CCHHHHHHHHH
Confidence 4799999999999887654433222 24555555444
No 199
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.
Probab=93.50 E-value=13 Score=44.94 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCCe
Q 003940 281 PQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGG 360 (784)
Q Consensus 281 ~~~~l~~~~~~l~~~~D~~~GGfg~aPKFP~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GG 360 (784)
...+++.+.+.|... |..-||+|.. |.+..+..|--+.. |. ...+. +.+.++.+..= +..+.+|+
T Consensus 234 r~~a~~~~~~~i~~~-q~~~g~~~~~---~~~~~l~~lal~~~-----g~-~~~~~----~~~~l~~l~~~-~~~~~~g~ 298 (634)
T cd02892 234 RRKALRKAYEWILYR-DENTGYLGII---PPPKANNMLALWVL-----GY-PDSPA----FKRHLERIDDF-LWLGPEGM 298 (634)
T ss_pred HHHHHHHHHHHHHHH-hcCCCceeee---ehHHHHHHHHHHHc-----CC-CCCHH----HHHHHHHHHhc-EEEecCCc
Confidence 456677777777655 7778999884 33433433322221 11 01122 33334433221 22223566
Q ss_pred EEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc-CCCCc
Q 003940 361 FHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI-GPGGE 422 (784)
Q Consensus 361 F~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~-~~~Gg 422 (784)
++. ..+ .--++|.|+.+.++.++... +.+....+++++||.+.-. ++.|.
T Consensus 299 ~~~-~~~--------~s~~wDTala~~AL~~ag~~---~~~~~~l~ka~~wL~~~Q~~~~~gd 349 (634)
T cd02892 299 KMC-QTN--------GSQVWDTALAVQALLEAGLA---PEFDPALKKALDWLLESQILDNPGD 349 (634)
T ss_pred EEE-cCC--------CCchHHHHHHHHHHHHcCCC---ccchHHHHHHHHHHHHHHcCCCCCc
Confidence 543 111 11278999999999997532 3677889999999987432 44453
No 200
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.36 E-value=0.17 Score=60.07 Aligned_cols=79 Identities=25% Similarity=0.350 Sum_probs=60.3
Q ss_pred hHHHHHHHhhcCCcEEEEE-cccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003940 127 GEEAFAEARKRDVPIFLSI-GYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 127 ~~eal~~Ak~e~KpI~l~~-~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P 205 (784)
.++.+++.++-+||+-|.+ ...+|++|....+.. .+++ ..|.+...-.+|.++.|++.+.| ++.++|
T Consensus 464 ~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~---~~~~-~~~~~i~~~~i~~~~~~~~~~~~--------~v~~vP 531 (555)
T TIGR03143 464 GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAA---QRIA-SLNPNVEAEMIDVSHFPDLKDEY--------GIMSVP 531 (555)
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHH---HHHH-HhCCCceEEEEECcccHHHHHhC--------CceecC
Confidence 5788888899999997776 799999999876533 2333 34446777778999999998777 788999
Q ss_pred cEEEECCCCceeccc
Q 003940 206 LSVFLSPDLKPLMGG 220 (784)
Q Consensus 206 ~~vfl~pdg~pi~~~ 220 (784)
++++ ||+.++.|
T Consensus 532 ~~~i---~~~~~~~G 543 (555)
T TIGR03143 532 AIVV---DDQQVYFG 543 (555)
T ss_pred EEEE---CCEEEEee
Confidence 9986 46666543
No 201
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=93.17 E-value=0.34 Score=44.32 Aligned_cols=64 Identities=17% Similarity=0.157 Sum_probs=38.2
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~ 218 (784)
++-|+.+||++|+.+.+ +.+-++-.|..| |+++.|+.. .+++.+...+|...+|.. |++ |+.+.
T Consensus 10 Vvvysk~~Cp~C~~ak~-------~L~~~~i~~~~v--did~~~~~~-~~~~~l~~~tg~~tvP~V-fi~--g~~iG 73 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKR-------LLLTLGVNPAVH--EIDKEPAGK-DIENALSRLGCSPAVPAV-FVG--GKLVG 73 (99)
T ss_pred EEEEECCCCHHHHHHHH-------HHHHcCCCCEEE--EcCCCccHH-HHHHHHHHhcCCCCcCeE-EEC--CEEEc
Confidence 45678899999999864 222333345544 444555533 233444455678888986 554 55553
No 202
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=93.13 E-value=0.3 Score=57.37 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=66.0
Q ss_pred CCChhhhcc---cCCCcccccchHHHHHHHhhcCCcE-EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCC
Q 003940 108 EHSPYLLQH---AHNPVDWFAWGEEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE 183 (784)
Q Consensus 108 e~SpYL~qh---a~~~v~W~~~~~eal~~Ak~e~KpI-~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee 183 (784)
|=+++++.- +.++.. -.++..++.++-+||+ +..|...+|++|...-. .+ .++ +..|.+...-.+|..+
T Consensus 85 Ef~s~i~~i~~~~~~~~~---l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~-~~--~~~-a~~~~~i~~~~id~~~ 157 (517)
T PRK15317 85 EFTSLVLALLQVGGHPPK---LDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQ-AL--NLM-AVLNPNITHTMIDGAL 157 (517)
T ss_pred HHHHHHHHHHHhcCCCCC---CCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHH-HH--HHH-HHhCCCceEEEEEchh
Confidence 666665543 333332 2578888889989998 55688999999996543 33 233 3467777777789999
Q ss_pred CccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 184 RPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 184 ~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
.|++.+.| ++.++|++++ +|+.++.
T Consensus 158 ~~~~~~~~--------~v~~VP~~~i---~~~~~~~ 182 (517)
T PRK15317 158 FQDEVEAR--------NIMAVPTVFL---NGEEFGQ 182 (517)
T ss_pred CHhHHHhc--------CCcccCEEEE---CCcEEEe
Confidence 99998887 7889999976 4455543
No 203
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=92.96 E-value=0.39 Score=39.32 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=36.5
Q ss_pred EEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 143 l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+.++++||++|+.+.. .|+ ..+ .-...+|.+..++..+.+ +..+|...+|+.++ +|+.+.+
T Consensus 3 ~ly~~~~Cp~C~~~~~-~L~------~~~--i~~~~~di~~~~~~~~~l----~~~~~~~~~P~~~~---~~~~igg 63 (72)
T cd02066 3 VVFSKSTCPYCKRAKR-LLE------SLG--IEFEEIDILEDGELREEL----KELSGWPTVPQIFI---NGEFIGG 63 (72)
T ss_pred EEEECCCCHHHHHHHH-HHH------HcC--CcEEEEECCCCHHHHHHH----HHHhCCCCcCEEEE---CCEEEec
Confidence 4678999999998763 222 222 223456776656543333 33347778897754 5666654
No 204
>PF06917 Pectate_lyase_2: Periplasmic pectate lyase; InterPro: IPR010702 This family consists of several Enterobacterial periplasmic pectate lyase proteins. A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls [].; GO: 0016837 carbon-oxygen lyase activity, acting on polysaccharides, 0045490 pectin catabolic process, 0005737 cytoplasm; PDB: 2V8J_A 2V8K_A 2V8I_A.
Probab=92.91 E-value=0.39 Score=55.16 Aligned_cols=140 Identities=19% Similarity=0.268 Sum_probs=76.0
Q ss_pred HHHHhcCCCHHHHHH----HHHHHHHHHHhhhcCCCCCCC-Cchhhhch--------------------HHHHHHHHHHH
Q 003940 502 ASASKLGMPLEKYLN----ILGECRRKLFDVRSKRPRPHL-DDKVIVSW--------------------NGLVISSFARA 556 (784)
Q Consensus 502 ~~a~~~g~~~~~l~~----~l~~~r~kL~~~R~~R~~P~l-DdKiitsW--------------------Nal~I~ALa~a 556 (784)
++++++|.+.+++.+ -|+...+.-++...+-.+|.+ |-+-||.. -+-.+.++++|
T Consensus 317 ~l~~~lG~~~~~~l~W~i~gL~a~~~yAYd~~~N~~~PM~~dG~dltgy~l~RdGYYG~KGtvl~~~p~~~~yll~~vra 396 (557)
T PF06917_consen 317 ELARQLGQDDKEMLTWAIDGLKAYYRYAYDEENNEIRPMWNDGQDLTGYRLPRDGYYGKKGTVLKPFPADPDYLLPYVRA 396 (557)
T ss_dssp HHHHHTGGGGHHHHHHHHHHHHHHHHHHEETTTTEE--EETTSEB-TTEE-SS-BTTB-TT-EE--EE--HHHHHHHHHH
T ss_pred HHHHHhCCchHHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCcccccccccCCCCCeeccccCchhHhHHHHHH
Confidence 467777766555443 333444555555555566643 22222211 12337799999
Q ss_pred HHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHc
Q 003940 557 SKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFG 636 (784)
Q Consensus 557 ~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li~aLL~LYeaT 636 (784)
+++.+| +..-+.+..+++ ++-- |-+-.....+.........+-.+++.|+|+||++|
T Consensus 397 ~~~s~D----------------~~Lw~~~~~m~~----~~gL---Gdig~~~~~~~~~~~~~~~~sp~~L~allEL~~at 453 (557)
T PF06917_consen 397 YRLSRD----------------PELWDLARTMAH----HFGL---GDIGNAAGKEPRVNMQTDNASPYLLFALLELYQAT 453 (557)
T ss_dssp HHHS------------------HHHHHHHHHHHH----HTT----EE-TTBTTBS-EE-TT-----HHHHHHHHHHHHHH
T ss_pred HHcCCC----------------HHHHHHHHHHHh----hcCc---ccccCccccccccccCCCCCCHHHHHHHHHHHHHh
Confidence 999887 667777777764 3211 11100000111122344456678999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhccccCCCccccc
Q 003940 637 SGTKWLVWAIELQNTQDELFLDREGGGYFNT 667 (784)
Q Consensus 637 gd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 667 (784)
++++|++.|..+.+.+.++-+. .|||-.
T Consensus 454 q~~~~l~lA~~~g~~l~~~~~~---~GlF~~ 481 (557)
T PF06917_consen 454 QDARYLELADQVGENLFEQHFH---RGLFVA 481 (557)
T ss_dssp --HHHHHHHHHHHHHHHHHHEE---TTEE-S
T ss_pred CCHHHHHHHHHHHHHHHHHHcc---CceecC
Confidence 9999999999999998887664 345543
No 205
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=92.81 E-value=0.34 Score=39.54 Aligned_cols=53 Identities=17% Similarity=0.279 Sum_probs=33.6
Q ss_pred EEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003940 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (784)
Q Consensus 143 l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vf 209 (784)
+.|+.+||++|+...+ +|++ +.=..-+|+++.++..+.+ ...+|..+.|+.++
T Consensus 2 ~vy~~~~C~~C~~~~~----------~L~~~~i~y~~~dv~~~~~~~~~l----~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 2 VVYTKPGCPYCKKAKE----------FLDEKGIPYEEVDVDEDEEAREEL----KELSGVRTVPQVFI 55 (60)
T ss_dssp EEEESTTSHHHHHHHH----------HHHHTTBEEEEEEGGGSHHHHHHH----HHHHSSSSSSEEEE
T ss_pred EEEEcCCCcCHHHHHH----------HHHHcCCeeeEcccccchhHHHHH----HHHcCCCccCEEEE
Confidence 5688899999998753 3333 2333445666555444333 33348889999886
No 206
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=92.81 E-value=9.1 Score=43.26 Aligned_cols=115 Identities=15% Similarity=0.062 Sum_probs=71.1
Q ss_pred HHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCC---cccCCCeEEEEec---CCCCCC---------CCCchh
Q 003940 314 EIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI---HDHVGGGFHRYSV---DERWHV---------PHFEKM 378 (784)
Q Consensus 314 ~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi---~D~v~GGF~RYsv---D~~W~v---------PHFEKM 378 (784)
.+.++-.+...++| ..--++....+...|+.+..|.- +-+...||...-. -..|.. |.--|-
T Consensus 89 fl~~l~~Y~~~t~D---~~~l~~~~~~i~~il~~~~~g~~~~~~~d~~~gl~~~~~~~~~~tWmD~~~~g~~~tpr~g~~ 165 (370)
T PF06202_consen 89 FLIALQEYYRWTGD---YSFLRELYPAIEEILEWYADGTDFGIRVDPEDGLIYSGNGLNNQTWMDARNDGRPVTPRDGAA 165 (370)
T ss_pred HHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHHhCCCCccccccCCCeeecCCCCCCCCccccccCCccccCCCCcc
Confidence 34445555665543 22224556667788999888644 2222477876432 356653 222244
Q ss_pred HHHHHHHHHHHHHHHHccC---C---hHHHHHHHHHHHHHHHhccCCCCceee-cccCCC
Q 003940 379 LYDQGQLANVYLDAFSLTK---D---VFYSYICRDILDYLRRDMIGPGGEIFS-AEDADS 431 (784)
Q Consensus 379 LyDNA~Ll~~ya~Ay~~t~---d---~~y~~~A~~t~~fl~~~m~~~~Ggfys-a~DADS 431 (784)
.--||+...++..+..+.. + ..|++.|++.-+=+.+.+|++++|+|. ++|.+.
T Consensus 166 vEIqal~y~AL~~~~~la~~~~~~~a~~~~~~A~~lk~~F~~~FW~~~~g~~~d~ld~~~ 225 (370)
T PF06202_consen 166 VEIQALWYNALRFAAELAEKFGDELAARYREWAERLKESFEKRFWDEDRGYYADALDGDK 225 (370)
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHcCCCCCEEEEEecCCC
Confidence 4448888777665544432 3 478899999988888899999977776 666543
No 207
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=92.57 E-value=0.31 Score=46.43 Aligned_cols=81 Identities=25% Similarity=0.304 Sum_probs=59.5
Q ss_pred hhhcccCCCcccccchHHHHHHH--hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEE-EEcCCCCccHH
Q 003940 112 YLLQHAHNPVDWFAWGEEAFAEA--RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVD 188 (784)
Q Consensus 112 YL~qha~~~v~W~~~~~eal~~A--k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~V-kvD~ee~pdi~ 188 (784)
||+-|-++ ..+..+| -.+.|.|.|-||-+|=+-|-.|+. .+. .+++.+. ||+.| -||+++-|+..
T Consensus 3 ~lLp~L~s--------~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~-~L~--~i~~~vs-nfa~IylvdideV~~~~ 70 (142)
T KOG3414|consen 3 YLLPTLHS--------GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDE-LLS--SIAEDVS-NFAVIYLVDIDEVPDFV 70 (142)
T ss_pred eecccccc--------HHHHHHHHhcccceEEEEEecCCCCchHhhHHH-HHH--HHHHHHh-hceEEEEEecchhhhhh
Confidence 55555554 2344455 467899999999999999999984 444 6777775 56665 57999999988
Q ss_pred HHHHHHHHHhcCCCCCCcEEEECC
Q 003940 189 KVYMTYVQALYGGGGWPLSVFLSP 212 (784)
Q Consensus 189 ~~y~~~~q~~~g~~G~P~~vfl~p 212 (784)
+.| +..-.|+++|+=.
T Consensus 71 ~~~--------~l~~p~tvmfFfn 86 (142)
T KOG3414|consen 71 KMY--------ELYDPPTVMFFFN 86 (142)
T ss_pred hhh--------cccCCceEEEEEc
Confidence 776 6677888887743
No 208
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=92.57 E-value=0.23 Score=50.96 Aligned_cols=80 Identities=14% Similarity=0.094 Sum_probs=45.0
Q ss_pred cCCcEEEEEcc-cCChhhhhhhhcccCCHHHHHHHhc---ccEEEEEcCCCC-ccH--HHH-------H---------HH
Q 003940 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREER-PDV--DKV-------Y---------MT 193 (784)
Q Consensus 137 e~KpI~l~~~~-~wC~wC~~Me~etf~d~eVa~~ln~---~FV~VkvD~ee~-pdi--~~~-------y---------~~ 193 (784)
.||+++|.|+. +||.+|..--. .| .+.++.+.+ .+|.|.+|.... +.. ... + ++
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~-~l--~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ 111 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEII-QF--SDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKS 111 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHH-HH--HHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhH
Confidence 58999999984 88999986433 23 233444432 355566553321 000 000 0 11
Q ss_pred HHHHhcCCC----C--CCcEEEECCCCceeccc
Q 003940 194 YVQALYGGG----G--WPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 194 ~~q~~~g~~----G--~P~~vfl~pdg~pi~~~ 220 (784)
..+. +|+. | +|.++++||+|++.+..
T Consensus 112 ia~~-ygv~~~~~g~~~r~~fiID~~G~i~~~~ 143 (199)
T PTZ00253 112 IARS-YGVLEEEQGVAYRGLFIIDPKGMLRQIT 143 (199)
T ss_pred HHHH-cCCcccCCCceEEEEEEECCCCEEEEEE
Confidence 1222 2432 3 68999999999988754
No 209
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=92.52 E-value=1 Score=39.56 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=36.7
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCC--CCCCcEEEECCCCceec
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPDLKPLM 218 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~--~G~P~~vfl~pdg~pi~ 218 (784)
++.|+.+||++|+...+ .++.=. ... .++-...+|.++.+...+.. ....|. .++|+.+ + ||+.+.
T Consensus 3 v~iy~~~~C~~C~~a~~-~L~~l~--~~~-~~i~~~~idi~~~~~~~~el----~~~~~~~~~~vP~if-i--~g~~ig 70 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKE-LAEKLS--EER-DDFDYRYVDIHAEGISKADL----EKTVGKPVETVPQIF-V--DQKHIG 70 (85)
T ss_pred EEEEeCCCChhHHHHHH-HHHhhc--ccc-cCCcEEEEECCCChHHHHHH----HHHHCCCCCcCCEEE-E--CCEEEc
Confidence 66789999999998753 332111 111 24556667776554222222 122243 5789965 4 566654
No 210
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=92.38 E-value=21 Score=43.39 Aligned_cols=45 Identities=9% Similarity=0.020 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003940 379 LYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (784)
Q Consensus 379 LyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfys 425 (784)
+-|.|..+.++..+ ....++.+....+++++||++ |++++|||-+
T Consensus 380 ~ddTa~~L~AL~~~-~~~~~~~~~~~i~ra~~wLl~-~Qn~dGgw~a 424 (635)
T TIGR01507 380 VDDTAVVVWALNGL-RLPDERRRRDAMTKAFRWIAG-MQSSNGGWGA 424 (635)
T ss_pred chhHHHHHHHHHHc-CCCccccchHHHHHHHHHHHH-hcCCCCCEec
Confidence 34788888888776 334567788999999999997 8899999843
No 211
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=92.23 E-value=0.85 Score=49.13 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=51.5
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHH----------------------H
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVY----------------------M 192 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y----------------------~ 192 (784)
.+|+|+|.|+ ++||..|.. |--.|+ +..+.+. +++..|=|..+. +...+.+ .
T Consensus 97 kgk~vVL~FyPa~ftpvCt~-El~~l~--~~~~ef~~~gv~VigIS~Ds-~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~ 172 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPS-ELLGFS--ERLKEFEERGVKVLGVSVDS-PFSHKAWKELDVRQGGVSPLKFPLFSDISR 172 (261)
T ss_pred CCCeEEEEEECCCCCCCCHH-HHHHHH--HHHHHHHHCCCEEEEEECCC-HHHHHHHHhhhhhhccccCcceEEEEcCCh
Confidence 4788888888 899999997 333343 2222232 233333333221 1101111 1
Q ss_pred HHHHHhcCCC-----CCCcEEEECCCCceeccccc-cCCCCCCCcchHHHHHHHHH
Q 003940 193 TYVQALYGGG-----GWPLSVFLSPDLKPLMGGTY-FPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 193 ~~~q~~~g~~-----G~P~~vfl~pdg~pi~~~tY-~p~~~~~~~~~f~~~L~~i~ 242 (784)
+..+. +|+. ..|.++++||+|++.+...| .+.. ...-++|+.|.
T Consensus 173 ~iaka-yGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~g-----r~v~eiLr~l~ 222 (261)
T PTZ00137 173 EVSKS-FGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLG-----RSVDETLRLFD 222 (261)
T ss_pred HHHHH-cCCCCcCCceecEEEEECCCCEEEEEEEeCCCCC-----CCHHHHHHHHH
Confidence 11222 2432 47999999999999887543 3322 24666665543
No 212
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=91.68 E-value=0.76 Score=41.84 Aligned_cols=72 Identities=14% Similarity=0.192 Sum_probs=39.4
Q ss_pred HHHHHhhcCCcEEEEE-c---ccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003940 130 AFAEARKRDVPIFLSI-G---YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 130 al~~Ak~e~KpI~l~~-~---~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P 205 (784)
.+++.-+++| |+|.. | ++||+||+...+ .|++ ++-.|. .+|+++.+++.+. +...+|...+|
T Consensus 4 ~v~~~i~~~~-Vvvf~kg~~~~~~Cp~C~~ak~-lL~~------~~i~~~--~~di~~~~~~~~~----l~~~tg~~tvP 69 (97)
T TIGR00365 4 RIKEQIKENP-VVLYMKGTPQFPQCGFSARAVQ-ILKA------CGVPFA--YVNVLEDPEIRQG----IKEYSNWPTIP 69 (97)
T ss_pred HHHHHhccCC-EEEEEccCCCCCCCchHHHHHH-HHHH------cCCCEE--EEECCCCHHHHHH----HHHHhCCCCCC
Confidence 4455555554 54544 3 389999998753 3332 222354 4566555554332 23345777778
Q ss_pred cEEEECCCCceec
Q 003940 206 LSVFLSPDLKPLM 218 (784)
Q Consensus 206 ~~vfl~pdg~pi~ 218 (784)
.. |++ |+.|.
T Consensus 70 ~v-fi~--g~~iG 79 (97)
T TIGR00365 70 QL-YVK--GEFVG 79 (97)
T ss_pred EE-EEC--CEEEe
Confidence 76 454 55543
No 213
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement. The vertebrate complement system, comprised of a large number of distinct plasma proteins, is an effector of both the acquired and innate immune systems. The point of convergence of the classical, alternative and lectin pathways of the complement system is the proteolytic activation of C3. C4 plays a key role in propagating the classical and lectin pathways. C5 participates in the classical and alternative pathways. The thioester bond located within the structure of C3 and C4 is central to the function of complement. C5 does not contain an active thioester bond.
Probab=91.68 E-value=23 Score=38.60 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 003940 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 414 (784)
Q Consensus 335 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~ 414 (784)
+++.+++....+++.. |-+-+|||-- |. +-+=-....|..+.++.+|-+.. +.-..+.+++++||++
T Consensus 48 ~~~~~~i~~g~~r~l~---~q~~dGsf~~------w~--~~~~s~wlTA~v~~~l~~a~~~~--~v~~~~l~~a~~wL~~ 114 (297)
T cd02896 48 DEALKYIRQGYQRQLS---YRKPDGSYAA------WK--NRPSSTWLTAFVVKVFSLARKYI--PVDQNVICGSVNWLIS 114 (297)
T ss_pred HHHHHHHHHHHHHHHh---ccCCCCCccC------CC--CCCcchhhHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHh
Confidence 4788888888888875 5567899943 31 11334567899999999997654 2335788999999998
Q ss_pred hccCCCCcee
Q 003940 415 DMIGPGGEIF 424 (784)
Q Consensus 415 ~m~~~~Ggfy 424 (784)
. +.++|+|-
T Consensus 115 ~-Q~~dG~f~ 123 (297)
T cd02896 115 N-QKPDGSFQ 123 (297)
T ss_pred c-CCCCCeeC
Confidence 5 88899884
No 214
>PRK13599 putative peroxiredoxin; Provisional
Probab=91.41 E-value=0.57 Score=48.94 Aligned_cols=37 Identities=19% Similarity=0.171 Sum_probs=25.1
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHH
Q 003940 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (784)
Q Consensus 203 G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (784)
+.|+++++||+|++.+... .|.. .+ ..+-++|+.+..
T Consensus 118 ~~R~tfIID~dG~Ir~~~~-~p~~--~g-r~~~eilr~l~~ 154 (215)
T PRK13599 118 TVRAVFIVDDKGTIRLIMY-YPQE--VG-RNVDEILRALKA 154 (215)
T ss_pred eeeEEEEECCCCEEEEEEE-cCCC--CC-CCHHHHHHHHHH
Confidence 5799999999999887643 3322 12 367777766653
No 215
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=91.23 E-value=0.63 Score=39.53 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=33.5
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~ 211 (784)
++-++.+||++|++..+ .|+. .+=.|.. +|.++.++..+.+ +.++|..+.|..+ ++
T Consensus 3 v~ly~~~~C~~C~ka~~-~L~~------~gi~~~~--~di~~~~~~~~el----~~~~g~~~vP~v~-i~ 58 (73)
T cd03027 3 VTIYSRLGCEDCTAVRL-FLRE------KGLPYVE--INIDIFPERKAEL----EERTGSSVVPQIF-FN 58 (73)
T ss_pred EEEEecCCChhHHHHHH-HHHH------CCCceEE--EECCCCHHHHHHH----HHHhCCCCcCEEE-EC
Confidence 45688899999998753 3322 2223444 4666666554443 3334777888874 44
No 216
>PHA03050 glutaredoxin; Provisional
Probab=91.20 E-value=0.87 Score=42.44 Aligned_cols=70 Identities=10% Similarity=0.173 Sum_probs=39.1
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCC-CccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE-RPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee-~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg 214 (784)
++++ ++-|..+||+||++..+ .|++-.|. ...|..+.+|..+ .+++ ...+...+|...+|..+ ++ |
T Consensus 11 ~~~~--V~vys~~~CPyC~~ak~-~L~~~~i~---~~~~~~i~i~~~~~~~~~----~~~l~~~tG~~tVP~If-I~--g 77 (108)
T PHA03050 11 ANNK--VTIFVKFTCPFCRNALD-ILNKFSFK---RGAYEIVDIKEFKPENEL----RDYFEQITGGRTVPRIF-FG--K 77 (108)
T ss_pred ccCC--EEEEECCCChHHHHHHH-HHHHcCCC---cCCcEEEECCCCCCCHHH----HHHHHHHcCCCCcCEEE-EC--C
Confidence 4444 56789999999998653 33322210 0145566666321 2332 23334556888899884 54 5
Q ss_pred ceec
Q 003940 215 KPLM 218 (784)
Q Consensus 215 ~pi~ 218 (784)
+.|.
T Consensus 78 ~~iG 81 (108)
T PHA03050 78 TSIG 81 (108)
T ss_pred EEEe
Confidence 5553
No 217
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.05 E-value=0.75 Score=54.04 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=57.3
Q ss_pred hHHHHHHHhhcCCcE-EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003940 127 GEEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 127 ~~eal~~Ak~e~KpI-~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P 205 (784)
.++.+++.++-+||+ +.-|....|++|...-+ .+ .-.+..|.+...-.+|..+.|++.+.| ++.++|
T Consensus 105 ~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~-~~---~~~a~~~p~i~~~~id~~~~~~~~~~~--------~v~~VP 172 (515)
T TIGR03140 105 DEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQ-AL---NQMALLNPNISHTMIDGALFQDEVEAL--------GIQGVP 172 (515)
T ss_pred CHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHH-HH---HHHHHhCCCceEEEEEchhCHHHHHhc--------CCcccC
Confidence 478888889889998 55688999999986432 33 233445666666667888899998877 778999
Q ss_pred cEEEECCCCceecc
Q 003940 206 LSVFLSPDLKPLMG 219 (784)
Q Consensus 206 ~~vfl~pdg~pi~~ 219 (784)
+.++ +|+.++.
T Consensus 173 ~~~i---~~~~~~~ 183 (515)
T TIGR03140 173 AVFL---NGEEFHN 183 (515)
T ss_pred EEEE---CCcEEEe
Confidence 9986 4455543
No 218
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=90.97 E-value=0.5 Score=41.03 Aligned_cols=67 Identities=18% Similarity=0.212 Sum_probs=38.9
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (784)
|.++++ ++-++.+||++|+...+ .|+ ..+=.|..| |.+++++... + ...+|...+|..++ +
T Consensus 4 ~~~~~~--V~ly~~~~Cp~C~~ak~-~L~------~~gi~y~~i--di~~~~~~~~-~----~~~~g~~~vP~i~i---~ 64 (79)
T TIGR02190 4 ARKPES--VVVFTKPGCPFCAKAKA-TLK------EKGYDFEEI--PLGNDARGRS-L----RAVTGATTVPQVFI---G 64 (79)
T ss_pred cCCCCC--EEEEECCCCHhHHHHHH-HHH------HcCCCcEEE--ECCCChHHHH-H----HHHHCCCCcCeEEE---C
Confidence 344444 55788999999999763 332 233346654 4444333221 1 22357889999864 5
Q ss_pred Cceecc
Q 003940 214 LKPLMG 219 (784)
Q Consensus 214 g~pi~~ 219 (784)
|+.+.+
T Consensus 65 g~~igG 70 (79)
T TIGR02190 65 GKLIGG 70 (79)
T ss_pred CEEEcC
Confidence 666543
No 219
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=90.94 E-value=1 Score=40.17 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=35.7
Q ss_pred CCcEEEEEc----ccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003940 138 DVPIFLSIG----YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (784)
Q Consensus 138 ~KpI~l~~~----~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (784)
++||+|... .+||+||+...+ .|++ .+-.|..+ |.++.+++. ..+...+|...+|.. |++
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~-~L~~------~~i~y~~i--dv~~~~~~~----~~l~~~~g~~tvP~v-fi~-- 70 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQ-ILNQ------LGVDFGTF--DILEDEEVR----QGLKEYSNWPTFPQL-YVN-- 70 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHH-HHHH------cCCCeEEE--EcCCCHHHH----HHHHHHhCCCCCCEE-EEC--
Confidence 356666543 379999998653 2222 22234444 444445443 333445678889986 564
Q ss_pred Ccee
Q 003940 214 LKPL 217 (784)
Q Consensus 214 g~pi 217 (784)
|+.|
T Consensus 71 g~~i 74 (90)
T cd03028 71 GELV 74 (90)
T ss_pred CEEE
Confidence 5554
No 220
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=90.87 E-value=0.63 Score=50.58 Aligned_cols=63 Identities=19% Similarity=0.312 Sum_probs=48.0
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh-----cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-----DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln-----~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl 210 (784)
.+..|||.|+|+||...+++.. .|+. -++.+. ..-|.-+||.+..-+|...| .+.-+||.=++
T Consensus 12 s~elvfv~FyAdWCrFSq~L~p-iF~E--Aa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky--------~I~KyPTlKvf 79 (375)
T KOG0912|consen 12 SNELVFVNFYADWCRFSQMLKP-IFEE--AAAKFKQEFPEGKVVWGKVDCDKEDDIADKY--------HINKYPTLKVF 79 (375)
T ss_pred cceEEeeeeehhhchHHHHHhH-HHHH--HHHHHHHhCCCcceEEEEcccchhhHHhhhh--------ccccCceeeee
Confidence 4778999999999999998864 6652 333333 34688899999888998888 56789987544
No 221
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms]
Probab=90.54 E-value=6.9 Score=48.25 Aligned_cols=147 Identities=20% Similarity=0.306 Sum_probs=99.6
Q ss_pred hhhhchHHHH--HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCC
Q 003940 540 KVIVSWNGLV--ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPG 617 (784)
Q Consensus 540 KiitsWNal~--I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~ 617 (784)
+-+-+.+|+. +.||..-+.+++| .....-|.+....|...-.. ...+.
T Consensus 690 ~~iga~~G~~g~~yal~~I~~~~~~----------------~~l~~~~~~~i~~le~~v~~--------------~~~~d 739 (963)
T COG4403 690 INIGAFTGLSGYFYALWKIYSVTRD----------------NYLIQSAENSIRHLEILVQK--------------SKDPD 739 (963)
T ss_pred cccccccccchhhhhhHHHHHhccc----------------HHHHHHHHHHHHHHHHHHhh--------------ccCcc
Confidence 4444555554 6688888888887 45667777777644332211 12245
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHH
Q 003940 618 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL 697 (784)
Q Consensus 618 ~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L 697 (784)
+..+-|=++..|+.+|+.|.++++++.|..+.+.+.+...-.++ .+++++-. --|+|-.+..|
T Consensus 740 ~i~Gl~g~i~~L~~iYk~~~epk~l~~ais~~~~l~~~~v~~d~---------s~~~l~gf--------shg~sgi~~tL 802 (963)
T COG4403 740 FINGLAGVICVLVSIYKLTDEPKFLELAISLGRILMEKIVGNDS---------SETVLLGF--------SHGASGIILTL 802 (963)
T ss_pred hhhccHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhhcccc---------ccceeccc--------ccchHHHHHHH
Confidence 55667888999999999999999999999999998876543221 12222211 13556678889
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 003940 698 VRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPLMCC 739 (784)
Q Consensus 698 ~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~~p~~~~~~~~ 739 (784)
+.|+.+|++ +.+.+.+.+++..=..+.... ++.|+.
T Consensus 803 ~~ly~~T~e---~~l~~~i~e~~~~Er~~f~~~---~~~Wc~ 838 (963)
T COG4403 803 LKLYEATGE---ESLLKKIKELLSYERMKFSDK---FTRWCS 838 (963)
T ss_pred HHHHHhcCc---HHHHHHHHHHHHHHHHHHHHH---HHHHhc
Confidence 999999996 889999998887655555442 445553
No 222
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. Bacterial SQCY catalyzes the convertion of squalene to hopene or diplopterol. Eukaryotic OSQCY transforms the 2,3-epoxide of squalene to compounds such as, lanosterol (a metabolic precursor of cholesterol and steroid hormones) in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain. This group also contains SQCY-like archael sequences and some bacterial SQCY's which lack this minor domain.
Probab=90.53 E-value=7.3 Score=42.84 Aligned_cols=142 Identities=11% Similarity=-0.013 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHhccc------------cCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcC--CHHHHHHH
Q 003940 580 EYMEVAESAASFIRRHLYD------------EQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGS--GTKWLVWA 645 (784)
Q Consensus 580 ~yle~A~~~a~~l~~~l~d------------~~~G~l~~~~~dg~~~~~~~leDyA~li~aLL~LYeaTg--d~~yL~~A 645 (784)
++-+...++.+||.++... ..+|+.-.....+ .....++-++++.+|+.+.+.+. +..+.+..
T Consensus 43 ~~~~~~~ka~~~l~~~q~~~~~~~~~~~~~~~~~Ggw~y~~~~~---~~~~~~~Ta~~l~al~~~~~~~~~~~~~~~~~i 119 (348)
T cd02889 43 EFDPALKKALEWLLKSQIRDNPDDWKVKYRHLRKGGWAFSTANQ---GYPDSDDTAEALKALLRLQKKPPDGKKVSRERL 119 (348)
T ss_pred ccCHHHHHHHHHHHhcCCCCCCCchhhcCCCCCCCcCcccCcCC---CCCCCCChHHHHHHHHHhhccCcccchhhHHHH
Confidence 4667888999999887621 1122221111010 01224588999999999988873 45666777
Q ss_pred HHHHHHHHHhccccCCCcccccCCC-CCccc-----cccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Q 003940 646 IELQNTQDELFLDREGGGYFNTTGE-DPSVL-----LRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHS 719 (784)
Q Consensus 646 ~~L~~~~~~~F~D~~~Ggyf~t~~~-~~~l~-----~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~ 719 (784)
.+..+.+..... .+|+|...... ....+ .-.....|...|+..+..+.+|..+.....+. ..++.+.+++.
T Consensus 120 ~~a~~~L~~~Q~--~dG~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ta~~l~aL~~~~~~~~~~-~~~~~~~i~~a 196 (348)
T cd02889 120 YDAVDWLLSMQN--SNGGFAAFEPDNTYKYLELIPEVDGDIMIDPPYVECTGSVLEALGLFGKLYPEH-RREIDPAIRRA 196 (348)
T ss_pred HHHHHHHHHhcc--CCCCEeeecCCccHHHHhcCchhhcCCccCCCCcchHHHHHHHHHHhhhcCCch-HHHHHHHHHHH
Confidence 777777776642 35776532111 10000 00111224445666777777777766643221 13456667777
Q ss_pred HHHHHHHH
Q 003940 720 LAVFETRL 727 (784)
Q Consensus 720 l~~~~~~l 727 (784)
++.+....
T Consensus 197 ~~~L~~~q 204 (348)
T cd02889 197 VKYLEREQ 204 (348)
T ss_pred HHHHHHhC
Confidence 77765543
No 223
>PF13728 TraF: F plasmid transfer operon protein
Probab=90.30 E-value=1 Score=47.15 Aligned_cols=73 Identities=16% Similarity=0.199 Sum_probs=43.0
Q ss_pred CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCC--ccHHHHH--HHHHHHhcCCCCCCcEEEECC
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER--PDVDKVY--MTYVQALYGGGGWPLSVFLSP 212 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~--pdi~~~y--~~~~q~~~g~~G~P~~vfl~p 212 (784)
++-=|+.|+.+.|+.||.+.. -|..+-++ +|-.+-|+.+.. |.+.... ....+. .|+.-+|++++++|
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~p------il~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~-l~v~~~Pal~Lv~~ 192 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAP------ILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKR-LGVKVTPALFLVNP 192 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHH------HHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHH-cCCCcCCEEEEEEC
Confidence 555688999999999999874 33333333 354444544432 1110000 001112 28889999999999
Q ss_pred CCcee
Q 003940 213 DLKPL 217 (784)
Q Consensus 213 dg~pi 217 (784)
+++.+
T Consensus 193 ~~~~~ 197 (215)
T PF13728_consen 193 NTKKW 197 (215)
T ss_pred CCCeE
Confidence 88443
No 224
>TIGR01577 oligosac_amyl oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (PubMed: 11549021), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.
Probab=90.16 E-value=6 Score=47.74 Aligned_cols=147 Identities=14% Similarity=0.146 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCC--C-CCCcch
Q 003940 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSK--A-PGFLDD 621 (784)
Q Consensus 546 Nal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~~--~-~~~leD 621 (784)
.++++.||..++ +.+.|++..+|+.+.... +|.+++. +.+|... . ...++.
T Consensus 300 ~~~~a~Al~~~G-----------------------~~~~a~~~l~~l~~~q~~--~G~~~~~~~~dG~~~~~~~~~Q~D~ 354 (616)
T TIGR01577 300 ASYIATALDRAG-----------------------YHDRVDRFFRWAMQTQSR--DGSWQQRYYLNGRLAPLQWGLQIDE 354 (616)
T ss_pred HHHHHHHHHHCC-----------------------CHHHHHHHHHHHHHhhCc--CCCcceEEecCCCCCCCCCCccccc
Confidence 367888887774 336788889999887643 4666665 4677654 2 566777
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc---cccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHH
Q 003940 622 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF---LDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 698 (784)
Q Consensus 622 yA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F---~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~ 698 (784)
++..+.++..++..|+|..+++.--...+.+.+.. +++ | ... .+.. .++...+..+..+++...+|.
T Consensus 355 ~g~~l~al~~y~~~t~d~~~~~~~~~~v~~a~~fl~~~~~~--~-l~~---~~~~----lWEer~G~~~~t~a~~~aAL~ 424 (616)
T TIGR01577 355 TGSILWAMDQHYRLTNDRAFLEEIWESVQKAAQYLILFIDP--E-TPL---PCRD----LWEEREGVFTYTASAVYGGLD 424 (616)
T ss_pred hhHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhccC--C-CCC---CCCc----cceecCCccCccHHHHHHHHH
Confidence 99999999999999999887654433333333332 222 1 111 1111 112122445677776655555
Q ss_pred ---HHHHHhCCCC-chHHHHHHHHHHHHHHHHH
Q 003940 699 ---RLASIVAGSK-SDYYRQNAEHSLAVFETRL 727 (784)
Q Consensus 699 ---rL~~lt~~~~-~~~y~e~A~~~l~~~~~~l 727 (784)
+|+...|+.. ...|++.|+++-+.+....
T Consensus 425 ~aa~lA~~lGd~~~a~~~~~~Ad~ik~~i~~~~ 457 (616)
T TIGR01577 425 AAAAVADKLGEKRLAQNWKKAAEFIKRAVEERF 457 (616)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhc
Confidence 5555556421 2457777777666655443
No 225
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=89.66 E-value=0.85 Score=46.54 Aligned_cols=77 Identities=17% Similarity=0.227 Sum_probs=44.9
Q ss_pred HHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCC----CccHHHHHHHHHHHhcCCCCCCc
Q 003940 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE----RPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 132 ~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee----~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
..+.=.||+|+|.|+|+||+.|..|.. ++ ++.+.+. +.|+.|=+...+ .|+-.....++++. ..|++.
T Consensus 19 ~Ls~~~GKvvLVvf~AS~C~~~~q~~~--L~--~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~---~~g~~F 91 (183)
T PRK10606 19 TLEKYAGNVLLIVNVASKCGLTPQYEQ--LE--NIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKTYCRT---TWGVTF 91 (183)
T ss_pred eHHHhCCCEEEEEEEeCCCCCcHHHHH--HH--HHHHHHhhCCeEEEEeeccccccCCCCCHHHHHHHHHH---ccCCCc
Confidence 344456899999999999999976652 22 4444443 368888776532 22322223333331 124555
Q ss_pred EEE--ECCCCc
Q 003940 207 SVF--LSPDLK 215 (784)
Q Consensus 207 ~vf--l~pdg~ 215 (784)
-++ ++-+|.
T Consensus 92 pv~~k~dvnG~ 102 (183)
T PRK10606 92 PMFSKIEVNGE 102 (183)
T ss_pred eeEEEEccCCC
Confidence 555 666665
No 226
>PRK10638 glutaredoxin 3; Provisional
Probab=89.58 E-value=1.2 Score=38.84 Aligned_cols=62 Identities=16% Similarity=0.192 Sum_probs=36.0
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
++.++.+||++|++... .++. .+-.|..+ |+++.++..+.+ ...+|....|..+ + +|+.+.+
T Consensus 4 v~ly~~~~Cp~C~~a~~-~L~~------~gi~y~~~--dv~~~~~~~~~l----~~~~g~~~vP~i~-~--~g~~igG 65 (83)
T PRK10638 4 VEIYTKATCPFCHRAKA-LLNS------KGVSFQEI--PIDGDAAKREEM----IKRSGRTTVPQIF-I--DAQHIGG 65 (83)
T ss_pred EEEEECCCChhHHHHHH-HHHH------cCCCcEEE--ECCCCHHHHHHH----HHHhCCCCcCEEE-E--CCEEEeC
Confidence 44677899999998642 3332 22245554 444555443333 3345888899764 4 4666643
No 227
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=89.26 E-value=0.8 Score=39.52 Aligned_cols=57 Identities=21% Similarity=0.305 Sum_probs=33.1
Q ss_pred cccCChhhhhhhhcccCCHHHHHHHhcccEEEEE-cCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccc
Q 003940 146 GYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV-DREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 146 ~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~Vkv-D~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~~ 220 (784)
..++|+.|..+.+.. .++++.+ + +.+.+ |.++.+++ ..| |+.+.|+.++ ||+..+.|
T Consensus 6 ~~~~C~~C~~~~~~~---~~~~~~~--~-i~~ei~~~~~~~~~-~~y--------gv~~vPalvI---ng~~~~~G 63 (76)
T PF13192_consen 6 FSPGCPYCPELVQLL---KEAAEEL--G-IEVEIIDIEDFEEI-EKY--------GVMSVPALVI---NGKVVFVG 63 (76)
T ss_dssp ECSSCTTHHHHHHHH---HHHHHHT--T-EEEEEEETTTHHHH-HHT--------T-SSSSEEEE---TTEEEEES
T ss_pred eCCCCCCcHHHHHHH---HHHHHhc--C-CeEEEEEccCHHHH-HHc--------CCCCCCEEEE---CCEEEEEe
Confidence 566699999887521 3444333 2 43433 33333444 344 8889999965 57777654
No 228
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=89.07 E-value=0.74 Score=39.12 Aligned_cols=53 Identities=19% Similarity=0.252 Sum_probs=31.3
Q ss_pred EEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003940 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (784)
Q Consensus 143 l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vf 209 (784)
..++.++|++|+...+ .++ ..+-.|.. +|.++.|+....+ ..+ |..+.|..++
T Consensus 2 ~ly~~~~Cp~C~~ak~-~L~------~~~i~~~~--~di~~~~~~~~~~----~~~-g~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKK-ALE------EHGIAFEE--INIDEQPEAIDYV----KAQ-GFRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHH-HHH------HCCCceEE--EECCCCHHHHHHH----HHc-CCcccCEEEE
Confidence 3578899999998753 222 12223444 4555556544433 222 7778999654
No 229
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=89.05 E-value=1.5 Score=38.76 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=34.3
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCC--CCCCcEEEECCCCceec
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPDLKPLM 218 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~--~G~P~~vfl~pdg~pi~ 218 (784)
++.++.+||++|+.+.+ .++.-.+. ...+....+|.++.....+.+ ...+|. ..+|..+ + +|+.+.
T Consensus 2 V~vys~~~Cp~C~~ak~-~L~~~~~~---~~~i~~~~idi~~~~~~~~~l----~~~~g~~~~tVP~if-i--~g~~ig 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQ-LAEKLAIE---RADFEFRYIDIHAEGISKADL----EKTVGKPVETVPQIF-V--DEKHVG 69 (86)
T ss_pred EEEEeCCCCccHHHHHH-HHHHhCcc---cCCCcEEEEECCCCHHHHHHH----HHHhCCCCCCcCeEE-E--CCEEec
Confidence 35678999999999763 33221110 013445556665433212212 223354 6789885 4 455553
No 230
>PRK13191 putative peroxiredoxin; Provisional
Probab=89.04 E-value=2.5 Score=44.12 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=24.9
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHH
Q 003940 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (784)
Q Consensus 203 G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (784)
..|.++|+||+|++.+...|-.+- |+ .+-++|+.|..
T Consensus 123 ~~r~tfIID~~G~Ir~~~~~~~~~---gr-~~~eilr~l~a 159 (215)
T PRK13191 123 TVRAVFIVDDKGTVRLILYYPMEI---GR-NIDEILRAIRA 159 (215)
T ss_pred eeEEEEEECCCCEEEEEEecCCCC---CC-CHHHHHHHHHH
Confidence 369999999999988764432222 22 67777776653
No 231
>TIGR01507 hopene_cyclase squalene-hopene cyclase. SHC is an essential prokaryotic gene in hopanoid (triterpenoid) biosynthesis. Squalene hopene cyclase, an integral membrane protein, directly cyclizes squalene into hopanoid products.
Probab=88.93 E-value=25 Score=42.80 Aligned_cols=117 Identities=15% Similarity=0.219 Sum_probs=62.3
Q ss_pred cccCCCCCCC--CC-CCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCC--
Q 003940 297 DSRFGGFGSA--PK-FPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWH-- 371 (784)
Q Consensus 297 D~~~GGfg~a--PK-FP~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~-- 371 (784)
+...||||-. +. +|....-...|....... .........+.+-+..-|-.|.. -+|||--|..+....
T Consensus 362 ~~~~GGW~f~~~~~~~pd~ddTa~~L~AL~~~~-~~~~~~~~~~i~ra~~wLl~~Qn------~dGgw~af~~~~~~~~l 434 (635)
T TIGR01507 362 NLEPGGWAFQFDNVYYPDVDDTAVVVWALNGLR-LPDERRRRDAMTKAFRWIAGMQS------SNGGWGAFDVDNTSDLL 434 (635)
T ss_pred CCCCCccCCCCCCCCCCCchhHHHHHHHHHHcC-CCccccchHHHHHHHHHHHHhcC------CCCCEecccCCcchhHH
Confidence 4568999876 66 465432222222221111 00000112344444444555544 479997765444322
Q ss_pred --CCC--CchhH-----HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003940 372 --VPH--FEKML-----YDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (784)
Q Consensus 372 --vPH--FEKML-----yDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfys 425 (784)
+|. |..|+ -+.|+.+.+|.... ...-...++++++||++ ++.++||+|.
T Consensus 435 ~~~~f~d~~~~~D~~~~d~Ta~~l~al~~~g----~~~~~~~i~rav~~L~~-~Q~~dG~W~g 492 (635)
T TIGR01507 435 NHIPFCDFGAVTDPPTADVTARVLECLGSFG----YDDAWPVIERAVEYLKR-EQEPDGSWFG 492 (635)
T ss_pred hcCCccccccccCCCCccHHHHHHHHHHHhC----CCchhHHHHHHHHHHHH-ccCCCCCCcc
Confidence 342 11222 12678888887642 21126788999999986 7888999864
No 232
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=88.91 E-value=1.4 Score=45.29 Aligned_cols=19 Identities=11% Similarity=-0.169 Sum_probs=14.9
Q ss_pred CcE-EEEEcccCChhhhhhh
Q 003940 139 VPI-FLSIGYSTCHWCHVME 157 (784)
Q Consensus 139 KpI-~l~~~~~wC~wC~~Me 157 (784)
|+| ++++.++||+.|...-
T Consensus 26 k~vvlf~~pa~~cp~C~~el 45 (203)
T cd03016 26 SWGILFSHPADFTPVCTTEL 45 (203)
T ss_pred CEEEEEEecCCCCCcCHHHH
Confidence 665 5578999999999753
No 233
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=88.79 E-value=1.2 Score=37.54 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=33.3
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCC-CCCcEEEECCCCceec
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG-GWPLSVFLSPDLKPLM 218 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~-G~P~~vfl~pdg~pi~ 218 (784)
+..|+.++|++|+...+ .|+ ..+-.|..+.|+ +.++..+.+ ....|.. ++|.. |++ |+.+.
T Consensus 2 i~ly~~~~Cp~C~~ak~-~L~------~~~i~~~~i~i~--~~~~~~~~~----~~~~~~~~~vP~v-~i~--g~~ig 63 (75)
T cd03418 2 VEIYTKPNCPYCVRAKA-LLD------KKGVDYEEIDVD--GDPALREEM----INRSGGRRTVPQI-FIG--DVHIG 63 (75)
T ss_pred EEEEeCCCChHHHHHHH-HHH------HCCCcEEEEECC--CCHHHHHHH----HHHhCCCCccCEE-EEC--CEEEe
Confidence 35688899999998653 332 233345555444 444433222 1223554 89965 444 55553
No 234
>PLN02993 lupeol synthase
Probab=88.70 E-value=14 Score=45.56 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=38.3
Q ss_pred CeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHH----ccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003940 359 GGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFS----LTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (784)
Q Consensus 359 GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~----~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfys 425 (784)
||+.-=..|..|++-. |-|..+.+..-..+ ..+++...+...++++||+. |++++|||.+
T Consensus 471 GgW~Fs~~~~gyp~sD------dTAe~lka~l~l~~~~~~~~~~~~~~~~l~~av~wlL~-mQn~dGG~aa 534 (763)
T PLN02993 471 GAWTLSDRDHGWQVSD------CTAEALKCCMLLSMMPADVVGQKIDPEQLYDSVNLLLS-LQSENGGVTA 534 (763)
T ss_pred CcCcCccCCCCCCcCC------chHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHh-hccCCCCEEe
Confidence 6665323466777653 35555553222222 22356677899999999997 9999999865
No 235
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.44 E-value=0.18 Score=52.46 Aligned_cols=62 Identities=18% Similarity=0.213 Sum_probs=52.7
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl 210 (784)
.+|++++.|++.||.-|+.|+. +|. .+++.. ++...+|++.++.|++...+ .+.+.|+.++.
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~-v~~--~~~~~~-~~~~~~k~~a~~~~eis~~~--------~v~~vp~~~~~ 77 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQ-VFD--HLAEYF-KNAQFLKLEAEEFPEISNLI--------AVEAVPYFVFF 77 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHH-HHH--HHHHhh-hhheeeeehhhhhhHHHHHH--------HHhcCceeeee
Confidence 6899999999999999999974 665 566777 78999999999999998776 34589999987
No 236
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=88.39 E-value=4.7 Score=47.20 Aligned_cols=92 Identities=18% Similarity=0.181 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCC-CCC-CCCh-hHHHHHH--
Q 003940 622 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDH-DGA-EPSG-NSVSVIN-- 696 (784)
Q Consensus 622 yA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~-D~a-~PS~-Nsv~a~~-- 696 (784)
+--++-||+.+|..|||+-|++.|.++.+.+...|--+ +|-=+. ++..+.+. |+- -.|+ .|++++.
T Consensus 264 NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntp-tGIp~~--------~vn~ksG~~~n~~wasgg~SILaE~gt 334 (625)
T KOG2204|consen 264 NIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTP-TGIPKA--------LVNNKSGDADNYGWASGGSSILAEFGT 334 (625)
T ss_pred eeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCC-CCCchh--------hhccccCccCCcccccCcchHhhhcCc
Confidence 34457799999999999999999999999999988543 332111 11111110 111 1122 3344443
Q ss_pred ----HHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003940 697 ----LVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (784)
Q Consensus 697 ----L~rL~~lt~~~~~~~y~e~A~~~l~~~~~ 725 (784)
..-|+.++|+ +.|.++...+-+.+-.
T Consensus 335 lhlef~~LS~ltg~---P~~~ekv~~IRk~l~k 364 (625)
T KOG2204|consen 335 LHLEFSYLSKLTGN---PTFAEKVVKIRKVLNK 364 (625)
T ss_pred eeeehHHhhhccCC---chHHHHHHHHHHHHHh
Confidence 6689999986 8999999888777643
No 237
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=87.61 E-value=1.3 Score=37.94 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=34.3
Q ss_pred EEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003940 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (784)
Q Consensus 143 l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi 217 (784)
..++.+||++|+...+ .|+. .+=.|..+.| +..|...+.+ +..+|..++|+.+ ++ |+.+
T Consensus 2 ~ly~~~~Cp~C~~a~~-~L~~------~~i~~~~~di--~~~~~~~~~~----~~~~g~~~vP~i~-i~--g~~i 60 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKA-LLSS------KGVTFTEIRV--DGDPALRDEM----MQRSGRRTVPQIF-IG--DVHV 60 (79)
T ss_pred EEEecCCChhHHHHHH-HHHH------cCCCcEEEEe--cCCHHHHHHH----HHHhCCCCcCEEE-EC--CEEE
Confidence 3577899999998753 3332 2223555444 4445443333 3345788999974 43 5544
No 238
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=87.60 E-value=0.68 Score=50.47 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003940 384 QLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (784)
Q Consensus 384 ~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfys 425 (784)
.-+..++++|+.++++.|++.+.++++||+. |+.|+||+-.
T Consensus 48 ~e~~fLa~~y~~t~d~~y~~A~~rgld~LL~-aQypnGGWPQ 88 (290)
T TIGR02474 48 TEIRYLAQVYQQEKNAKYRDAARKGIEYLLK-AQYPNGGWPQ 88 (290)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHh-hhCCCCCcCc
Confidence 3566788999999999999999999999997 8899999843
No 239
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others. The 3D structure of the lantibiotic cyclase from L. lactis has been determined by X-ray crystallography to 2.5A resolution []. The globular structure is characterised by an all-alpha fold, in which an outer ring of helices envelops an inner toroid composed of 7 shorter, hydrophobic helices. This 7-fold hyrophobic periodicity has led several authors to claim various members of the family, including eukaryotic LanC-1 and GCR2, to be novel G protein-coupled receptors [, ]; some of these claims have since been corrected [, , ]. ; PDB: 3E6U_D 3E73_B 2G0D_A 2G02_A.
Probab=87.23 E-value=2.4 Score=46.42 Aligned_cols=135 Identities=16% Similarity=0.190 Sum_probs=87.7
Q ss_pred HHHHHHHHHHH-HHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCCcchHH
Q 003940 547 GLVISSFARAS-KILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLDDYA 623 (784)
Q Consensus 547 al~I~ALa~a~-~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~--~~~~leDyA 623 (784)
+=++.+|++++ +.+++ +++.+.++++.+++.++....+++ +.. .++.... ..++.++-+
T Consensus 170 ~Gi~~~L~~~~~~~~~~----------------~~~~~~i~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~WC~G~~ 231 (355)
T PF05147_consen 170 AGILYALLRLYKKGTKD----------------PEYLKLIEQILNFLLKHFNTDDGG-WPD-NRNNSNYKSRPSWCYGSP 231 (355)
T ss_dssp HHHHHHHCHCCHHT--H----------------HHHHHCHHHHHHHHHHC--TGCCT---S-ECTHHHHHC--SSSSSHH
T ss_pred HHHHHHHHHhhhcccCc----------------hhHHHHHHHHHHHHHHhcCcccCC-CCC-CCCccccccccccccCcH
Confidence 44678888888 57776 899999999999999988543333 222 1211100 356666777
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHH
Q 003940 624 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 703 (784)
Q Consensus 624 ~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~l 703 (784)
=.+.+++.+++..+++.+.+.++++.+.+...-. +.. +...--|++=.+..|..++..
T Consensus 232 Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~----------------~~~lCHG~aG~~~~l~~~~~~ 289 (355)
T PF05147_consen 232 GILLALLKAYKILDDEEYDEEAEQALESILQKGL------FLN----------------NPSLCHGTAGILEILLDLYKY 289 (355)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH-T------CTT----------------SS-STTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHccc------cCC----------------CCceeCchHHhHHHHHHHHHH
Confidence 7888999999999999999999988887766310 000 122234566677788999999
Q ss_pred hCCCCchHHHHHHHHHHHHHH
Q 003940 704 VAGSKSDYYRQNAEHSLAVFE 724 (784)
Q Consensus 704 t~~~~~~~y~e~A~~~l~~~~ 724 (784)
+++ +.|.+.+++++....
T Consensus 290 ~~~---~~~~~~~~~~~~~~~ 307 (355)
T PF05147_consen 290 TGD---EEYKELANKLIQKLL 307 (355)
T ss_dssp H-----HCCHHHHHHHHHHHC
T ss_pred cCC---HHHHHHHHHHHHHHH
Confidence 985 678888888866554
No 240
>PLN02993 lupeol synthase
Probab=87.19 E-value=5 Score=49.39 Aligned_cols=82 Identities=10% Similarity=0.163 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCeEEEEecCC--CCC--CC---CCchhHHH------HHHHHHHHHHHHHccC---ChH
Q 003940 337 GQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDE--RWH--VP---HFEKMLYD------QGQLANVYLDAFSLTK---DVF 400 (784)
Q Consensus 337 ~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~--~W~--vP---HFEKMLyD------NA~Ll~~ya~Ay~~t~---d~~ 400 (784)
.+.-+...|-.|.. -+|||.-|-.++ .|. +| ||+..+.| -+..|.++....+... .+.
T Consensus 514 ~l~~av~wlL~mQn------~dGG~aafe~~~~~~~le~ln~ae~f~~~miD~~~~dcT~~vl~aL~~~~~~~p~~r~~e 587 (763)
T PLN02993 514 QLYDSVNLLLSLQS------ENGGVTAWEPVRAYKWLELLNPTDFFANTMVEREYVECTSAVIQALVLFKQLYPDHRTKE 587 (763)
T ss_pred HHHHHHHHHHhhcc------CCCCEEeeeCCCchhHHHcCCHHHhhcCcccCCCCcCHHHHHHHHHHHhcccCcchhhhh
Confidence 33344444444544 479999999766 675 55 45555555 4555665554322221 133
Q ss_pred HHHHHHHHHHHHHHhccCCCCceee
Q 003940 401 YSYICRDILDYLRRDMIGPGGEIFS 425 (784)
Q Consensus 401 y~~~A~~t~~fl~~~m~~~~Ggfys 425 (784)
....++++++||.+ .+.++|++|.
T Consensus 588 i~~~i~rAv~yL~~-~Q~~DGSW~G 611 (763)
T PLN02993 588 IIKSIEKAVQFIES-KQTPDGSWYG 611 (763)
T ss_pred HHHHHHHHHHHHHH-hcCCCCCccc
Confidence 45788999999987 5788999873
No 241
>PLN03012 Camelliol C synthase
Probab=87.12 E-value=25 Score=43.47 Aligned_cols=60 Identities=12% Similarity=0.126 Sum_probs=37.0
Q ss_pred CeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHH----HccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003940 359 GGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAF----SLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (784)
Q Consensus 359 GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay----~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfys 425 (784)
||+.-=..|..|++.. |-|..+.+.+-.. ...+++...+...++++||+. |++++|||.+
T Consensus 471 GgW~Fs~~~~gyp~sD------~TAe~Lka~lll~~~~~~~~~~~~~~~~l~~av~wlL~-mQn~dGGwaa 534 (759)
T PLN03012 471 GAWTFSDRDHGWQASD------CTAEGFKCCLLFSMIAPDIVGPKMDPEQLHDAVNILLS-LQSKNGGMTA 534 (759)
T ss_pred CcccccCCCCCCCCCC------ccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHh-ccCCCCCEee
Confidence 6665322477777664 2443333211111 223455667889999999997 9999999865
No 242
>PRK10329 glutaredoxin-like protein; Provisional
Probab=86.93 E-value=1.5 Score=38.60 Aligned_cols=54 Identities=17% Similarity=0.267 Sum_probs=32.4
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vf 209 (784)
+.-++.+||++|+...+ .|+. .+=.|. .+|.++.|+....+ +. .|....|+.++
T Consensus 3 v~lYt~~~Cp~C~~ak~-~L~~------~gI~~~--~idi~~~~~~~~~~----~~-~g~~~vPvv~i 56 (81)
T PRK10329 3 ITIYTRNDCVQCHATKR-AMES------RGFDFE--MINVDRVPEAAETL----RA-QGFRQLPVVIA 56 (81)
T ss_pred EEEEeCCCCHhHHHHHH-HHHH------CCCceE--EEECCCCHHHHHHH----HH-cCCCCcCEEEE
Confidence 34678899999998753 3321 111244 45666556544332 22 37789999975
No 243
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=86.83 E-value=7.7 Score=44.02 Aligned_cols=131 Identities=12% Similarity=0.097 Sum_probs=80.4
Q ss_pred HHHHHHHHHhccccCC--CeEEEEec---CCCC---CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 003940 586 ESAASFIRRHLYDEQT--HRLQHSFR---NGPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 657 (784)
Q Consensus 586 ~~~a~~l~~~l~d~~~--G~l~~~~~---dg~~---~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~ 657 (784)
.++..|.++|+...+. +.+.|.+. +|.. +...=.|.=-+.+.||+...+..+++.|++.|+.|++.|.++-.
T Consensus 74 d~Lw~Wt~~~L~~~d~~~~L~aW~w~~~~~g~~~v~D~NsASDGDl~IA~ALl~A~~~W~~~~Y~~~A~~ll~~I~~~ev 153 (376)
T PRK11097 74 DKLLNWTENNLAQGDLTARLPAWLWGKKADGTWGVLDANSASDADLWIAYSLLEAGRLWKEPRYTALGTALLKRIAREEV 153 (376)
T ss_pred HHHHHHHHHHHhcCCCcccCceeEeccCCCCCcCCCCCCCCChHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhcc
Confidence 4677788888866443 34445442 2321 22233344468999999999999999999999999999998766
Q ss_pred ccCCC-cccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003940 658 DREGG-GYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (784)
Q Consensus 658 D~~~G-gyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~ 725 (784)
....| +....++... . ... +...-.+.=.+-..+-+++.++++ ..|.+.++..++.+..
T Consensus 154 ~~~~g~g~~LlPG~~g--F---~~~-~~~~~NPSY~~p~~~~~fa~~~~~---~~W~~l~~~~~~lL~~ 213 (376)
T PRK11097 154 VTVPGLGSMLLPGPVG--F---ADD-GSWRLNPSYLPPQLLRRFARFLPG---GPWAALAATNARLLLE 213 (376)
T ss_pred cccCCCceeecccccc--c---cCC-CCCeECcccccHHHHHHHHHhcCC---chHHHHHHHHHHHHHH
Confidence 54444 3333332210 0 000 111111112455667778888875 5788888877777654
No 244
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=86.45 E-value=14 Score=43.28 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=76.7
Q ss_pred CCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC----
Q 003940 537 LDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP---- 612 (784)
Q Consensus 537 lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~---- 612 (784)
-....+.+|....|..+.+.|+.+||... ..++....++..+++..+..+...+...+.+.|-.
T Consensus 197 ~~~~~~~~w~l~~i~~~~~~y~~tGD~~~------------l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DW~~~~~ 264 (509)
T PF05592_consen 197 GGGFGIPDWSLAWIIIPWDYYLYTGDREF------------LEEYYPAMKRYLDYLERRVDDGLDGLPGWGFGDWLAPGN 264 (509)
T ss_dssp SSGGGBHHHHHHHHHHHHHHHHHHT-HHH------------HHHHHHHHHHHHHHHHTTB-TSSB-CCSB--S-SS----
T ss_pred CCCCCCccHHHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHHHHHHhCCccccCCCCCceeecCCccC
Confidence 46777889999999999999999999321 25677888888888887664300111111122211
Q ss_pred ---CCCCCCcch---HHHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHhccccCCCcc
Q 003940 613 ---SKAPGFLDD---YAFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGY 664 (784)
Q Consensus 613 ---~~~~~~leD---yA~li~aLL~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggy 664 (784)
.......-. |..++..+.++.++.|++ .|.++|.+|-+.+.++|||++.|.+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a~~~~~~d~~~g~~ 326 (509)
T PF05592_consen 265 DGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLKAAINRHFWDPEKGGY 326 (509)
T ss_dssp TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHCEETTTTEE
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCcccCcc
Confidence 111222222 455666688888999985 6999999999999999999887754
No 245
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=86.08 E-value=0.63 Score=47.47 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=25.8
Q ss_pred HHHHHhhcCCcEEEEEcccCChhhhhhhhccc
Q 003940 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESF 161 (784)
Q Consensus 130 al~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf 161 (784)
++...+.++|+.++.|+-..|++|++++++..
T Consensus 69 ~i~~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~ 100 (197)
T cd03020 69 AIVYGKGNGKRVVYVFTDPDCPYCRKLEKELK 100 (197)
T ss_pred CeEEcCCCCCEEEEEEECCCCccHHHHHHHHh
Confidence 44444566899999999999999999987654
No 246
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=85.95 E-value=3 Score=45.88 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEE----ecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 003940 579 KEYMEVAESAASFIRRHLYDEQTHRLQHS----FRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE 654 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~~G~l~~~----~~dg~~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~ 654 (784)
++.++.-+-+..-|++|-+-|+. |-|- |.+. |.. -.+++.-.-||.+|||+.||+.|+++.+.+..
T Consensus 324 k~aie~heml~qvikkh~flpea--ft~df~vhwaeh-pir-------pefaestyflykat~dp~yl~v~k~iidnink 393 (587)
T KOG2430|consen 324 KEAIEMHEMLFQVIKKHKFLPEA--FTHDFQVHWAEH-PIR-------PEFAESTYFLYKATGDPHYLEVAKQIIDNINK 393 (587)
T ss_pred HHHHHHHHHHHHHHHHcccChHh--hcccceeecccC-CCC-------hhhhhhheeeecccCCchHHHHHHHHHHHHhh
Confidence 67778888888888777555542 2221 2221 111 23455566689999999999999999987654
Q ss_pred h
Q 003940 655 L 655 (784)
Q Consensus 655 ~ 655 (784)
.
T Consensus 394 y 394 (587)
T KOG2430|consen 394 Y 394 (587)
T ss_pred h
Confidence 3
No 247
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=85.14 E-value=2.9 Score=44.77 Aligned_cols=79 Identities=11% Similarity=0.055 Sum_probs=45.1
Q ss_pred HHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-c--cEEEEEcCCCCccHHHH--HHHHHHHhcCCCCC
Q 003940 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-W--FVSIKVDREERPDVDKV--YMTYVQALYGGGGW 204 (784)
Q Consensus 130 al~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~--FV~VkvD~ee~pdi~~~--y~~~~q~~~g~~G~ 204 (784)
+++...++ -=|+.|+.+.|++||.|.. -|..+-++ + -++|.+|-.-.|.+... -....+. .|+.-+
T Consensus 137 ~i~~la~~--~GL~fFy~s~Cp~C~~~aP------il~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~-l~v~~~ 207 (248)
T PRK13703 137 AIAKLAEH--YGLMFFYRGQDPIDGQLAQ------VINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQR-LGVKYF 207 (248)
T ss_pred HHHHHHhc--ceEEEEECCCCchhHHHHH------HHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHh-cCCccc
Confidence 34444444 5578899999999999974 44444444 2 45556664222221100 0001112 267779
Q ss_pred CcEEEECCCCcee
Q 003940 205 PLSVFLSPDLKPL 217 (784)
Q Consensus 205 P~~vfl~pdg~pi 217 (784)
|++++++|+.+-+
T Consensus 208 PAl~Lv~~~t~~~ 220 (248)
T PRK13703 208 PALMLVDPKSGSV 220 (248)
T ss_pred ceEEEEECCCCcE
Confidence 9999999986433
No 248
>PRK13189 peroxiredoxin; Provisional
Probab=85.08 E-value=2.9 Score=43.89 Aligned_cols=36 Identities=22% Similarity=0.091 Sum_probs=22.4
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHH
Q 003940 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 203 G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
..|.++|+||+|++.+...|-.+. | ..+-++|+.|.
T Consensus 125 ~~r~tfIID~~G~Ir~~~~~~~~~---g-r~~~eilr~l~ 160 (222)
T PRK13189 125 TVRAVFIIDPKGIIRAILYYPQEV---G-RNMDEILRLVK 160 (222)
T ss_pred ceeEEEEECCCCeEEEEEecCCCC---C-CCHHHHHHHHH
Confidence 579999999999987653321111 1 14566665554
No 249
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=84.83 E-value=1e+02 Score=37.54 Aligned_cols=108 Identities=12% Similarity=0.102 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCC
Q 003940 280 LPQNALRLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGG 359 (784)
Q Consensus 280 ~~~~~l~~~~~~l~~~~D~~~GGfg~aPKFP~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~G 359 (784)
+...+++.+.+.|.. ..+.+|++.. +|....+..|.-+.. .. ..+ ++.+.|+.+..= +...-+|
T Consensus 232 lr~~A~~~~~~~i~~--~~~~~~~~~i--~p~~~~~~~l~~~g~-~~------~~p----~~~k~l~~l~~~-~~~~~~~ 295 (634)
T TIGR03463 232 LRARALDFCLEQIRA--EDEATHYICI--SPVNGVLNMLAWFAV-NP------DGP----EVAAHLEGLEDY-RYEDDDR 295 (634)
T ss_pred HHHHHHHHHHHHHHH--HhcCCCeEeh--HHHHHHHHHHHHhCC-CC------CCH----HHHHHHHHHHhh-EEEcCCC
Confidence 345567777776654 3456777775 564433333322221 11 112 344445544331 2223333
Q ss_pred eEE-EEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 003940 360 GFH-RYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 415 (784)
Q Consensus 360 GF~-RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~ 415 (784)
|.+ .-++.. .+|-|+.+.++.++... ++.+....+++++||.+.
T Consensus 296 g~~~q~~~s~----------~WDTala~~AL~e~g~~--~~~~~~~l~kA~~wL~~~ 340 (634)
T TIGR03463 296 GLRYNGYNSS----------EWDTAFAVQALAATPET--AGRHRRMLERAARFLEAN 340 (634)
T ss_pred CEEEeeCCCC----------chhHHHHHHHHHHcCCC--chhhhHHHHHHHHHHHHh
Confidence 543 222222 27889999999885332 347888999999999974
No 250
>KOG2204 consensus Mannosyl-oligosaccharide alpha-1,2-mannosidase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=84.79 E-value=40 Score=39.90 Aligned_cols=283 Identities=17% Similarity=0.132 Sum_probs=153.3
Q ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeecccCCCccccccccccCCceEEechHHHHHHhhhh
Q 003940 381 DQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH 460 (784)
Q Consensus 381 DNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~ 460 (784)
-|=+.+..|.-||-++|++.|+.-|.++.+=|+--+.-|.|-=++.++..|. -+.=|.|...-.. +|
T Consensus 263 ~NirF~GGllsay~lsge~~f~~kA~~igdkLLpAfntptGIp~~~vn~ksG---------~~~n~~wasgg~S-IL--- 329 (625)
T KOG2204|consen 263 TNIRFVGGLLSAYALSGEEMFLEKAPEIGDKLLPAFNTPTGIPKALVNNKSG---------DADNYGWASGGSS-IL--- 329 (625)
T ss_pred eeeeeehhhHHHhhhcccHHHHHhhHHHHHHhhhcccCCCCCchhhhccccC---------ccCCcccccCcch-Hh---
Confidence 3677888889999999999999999999999998888888876766665541 1333455521000 11
Q ss_pred HHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCH-HHHHHHHHHHHHHHHhhhcCCCCCCCCc
Q 003940 461 AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPL-EKYLNILGECRRKLFDVRSKRPRPHLDD 539 (784)
Q Consensus 461 ~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~-~~l~~~l~~~r~kL~~~R~~R~~P~lDd 539 (784)
++.|. ||+.. .-++...|.+. .+....|....+++.. |....-.
T Consensus 330 ----------aE~gt------------------lhlef--~~LS~ltg~P~~~ekv~~IRk~l~k~ek-----P~GLypn 374 (625)
T KOG2204|consen 330 ----------AEFGT------------------LHLEF--SYLSKLTGNPTFAEKVVKIRKVLNKSEK-----PHGLYPN 374 (625)
T ss_pred ----------hhcCc------------------eeeeh--HHhhhccCCchHHHHHHHHHHHHHhhcC-----CCCCCcc
Confidence 11221 22211 12344445433 3333334444344322 2211111
Q ss_pred hhhh---chHHHHHH----------HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeE
Q 003940 540 KVIV---SWNGLVIS----------SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRL 604 (784)
Q Consensus 540 Kiit---sWNal~I~----------ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~--G~l 604 (784)
+|.- -|--.+.+ =|.++.-..+. .+.++..+=.++...+.+++..... |..
T Consensus 375 YinP~sg~wgq~~tslg~lgDSfyeyllK~wl~s~k--------------Td~eak~my~~am~Ai~~~li~~S~~s~lt 440 (625)
T KOG2204|consen 375 YINPSSGEWGQHHTSLGALGDSFYEYLLKAWLQSDK--------------TDCEAKGMYEDAMIAIEKYLIFKSDGSGLT 440 (625)
T ss_pred cccCCCCchhhHHhHHhhhhhhHHHHHHHHHhhcCC--------------cchHHHHhHHHHHHHHHhhheeccCCCCeE
Confidence 1110 23322221 23344444433 1244555555566666666544322 344
Q ss_pred EEE-ecCCCCCCCCCcchHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHhccccCC--C--cccccCCCCCcc
Q 003940 605 QHS-FRNGPSKAPGFLDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREG--G--GYFNTTGEDPSV 674 (784)
Q Consensus 605 ~~~-~~dg~~~~~~~leDyA~li~aLL~LYeaTgd~-----~yL~~A~~L~~~~~~~F~D~~~--G--gyf~t~~~~~~l 674 (784)
|-+ +..|... . -..-.|.+.-|++.|....++. .|++.+.++..++-+-|..... | .|+.+.. ++..
T Consensus 441 yi~e~~~g~le-h-Km~hlacf~gGm~algA~~~~~~~~~~~y~el~~eia~TchesY~rt~T~lgpesf~fn~~-~ea~ 517 (625)
T KOG2204|consen 441 YISEWNGGGLE-H-KMGHLACFAGGMFALGAIKGDTVGSSKHYLELGGEIATTCHESYTRTTTKLGPESFWFNHG-VEAF 517 (625)
T ss_pred EEEecCCCchh-h-hhchhhcccccceeeccccCCCcchhHHHHHHhHHHHHHHHHHHhccccccChhhhcccCc-cchh
Confidence 443 4444321 1 1223467777888888888774 5999999999999887754332 2 2443332 2333
Q ss_pred ccccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 003940 675 LLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMAVPL 736 (784)
Q Consensus 675 ~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~~p~~~~~ 736 (784)
.+|..+. .-+.-+ -.++.+.=|.++|++ +.||+-+-+.++++... .+...++..
T Consensus 518 ~~r~~Es--yyILrp--EviEs~fYlwRlT~d---~kyR~wgweavqalek~-cr~~~G~~g 571 (625)
T KOG2204|consen 518 AVRKVES--YYILRP--EVIESYFYLWRLTGD---QKYRSWGWEAVQALEKY-CRVAKGYSG 571 (625)
T ss_pred hhhcccc--eeecCH--HHHHHHHHHhhhcCC---hhHHHHHHHHHHHHHHh-cccccchhh
Confidence 3333321 111112 256778889999996 78999999888765432 244444433
No 251
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=84.41 E-value=24 Score=42.43 Aligned_cols=112 Identities=10% Similarity=0.017 Sum_probs=70.0
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh-----ccccCCCeEEE----EecCC---
Q 003940 544 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH-----LYDEQTHRLQH----SFRNG--- 611 (784)
Q Consensus 544 sWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~-----l~d~~~G~l~~----~~~dg--- 611 (784)
+-.-+.|.++-+.++.++|... ..++...++++.+...+. ..|+ +|.++- +|.|.
T Consensus 348 DAtLWfi~al~~Y~~~tgD~~~------------l~~l~p~l~~ii~~y~~G~~~~i~~d~-dGLi~~g~~lTWMDa~~g 414 (575)
T TIGR01561 348 DASLWAIHAIDKTFAYSQDFLF------------IRDVVDKVLDIIDNYCAGNDFAIGMDN-DLIFHKGAPLTWMDAKVD 414 (575)
T ss_pred hHHHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHHHHhcCCCcEEEECC-CccEeCCCCCCCCCCCCC
Confidence 3346678899999999988211 134455555555543331 1232 344332 24443
Q ss_pred ----CCCCCCCcchHHHHHHHHHH---HHHHcCC--HHHHHHHHHHHHHHHHhccccCCCcccccC
Q 003940 612 ----PSKAPGFLDDYAFLISGLLD---LYEFGSG--TKWLVWAIELQNTQDELFLDREGGGYFNTT 668 (784)
Q Consensus 612 ----~~~~~~~leDyA~li~aLL~---LYeaTgd--~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (784)
.|...+..|-+|....||.. +.+..|+ ..|.++|+++.+.+.+.||+++.|.+|+.-
T Consensus 415 ~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~a~~y~~~A~~lk~~F~~~FW~~~~g~l~D~v 480 (575)
T TIGR01561 415 ERAVTPRAGAACEINALWYNALKTAEFLGNELGEDAESLEEKAAGVAKNFAEKFINPDGNCLFDLI 480 (575)
T ss_pred CccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhcCCCCCCeeEEEE
Confidence 12223677888877777655 5665666 458899999999999999998866666643
No 252
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=84.21 E-value=1e+02 Score=37.57 Aligned_cols=66 Identities=23% Similarity=0.401 Sum_probs=41.2
Q ss_pred CCCeEEEEecCCC--C--CC-CC--CchhH------HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCce
Q 003940 357 VGGGFHRYSVDER--W--HV-PH--FEKML------YDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEI 423 (784)
Q Consensus 357 v~GGF~RYsvD~~--W--~v-PH--FEKML------yDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggf 423 (784)
-+|||-.|..+.. | .+ |+ |..+. -..++.|.++..+. .+.+.+.+.++++++||.+ .+.++|++
T Consensus 403 ~dGGw~ay~~~~~~~~l~~l~p~e~f~d~~~d~~~~~~T~~~l~aL~~~~--~r~~~~~~~i~rAl~~L~~-~Q~~DGsw 479 (621)
T TIGR01787 403 SNGGFAAYDPDNTGEWLELLNPSEVFGDIMIDPPYVDVTARVIQALGAFG--HRADEIRNVLERALEYLRR-EQRADGSW 479 (621)
T ss_pred CCCCEeeeccccchHHHHHhcchhhhccccccCCCCchHHHHHHHHHHhc--CccHhHHHHHHHHHHHHHH-hcCCCCCC
Confidence 4699998876544 2 12 51 22221 12666666665432 1224577899999999987 56788987
Q ss_pred ee
Q 003940 424 FS 425 (784)
Q Consensus 424 ys 425 (784)
|.
T Consensus 480 ~g 481 (621)
T TIGR01787 480 FG 481 (621)
T ss_pred cc
Confidence 63
No 253
>PRK10137 alpha-glucosidase; Provisional
Probab=84.06 E-value=1.2e+02 Score=37.79 Aligned_cols=47 Identities=13% Similarity=0.251 Sum_probs=37.8
Q ss_pred HHHHH---HHHHHHHHHcCCH----HHHHHHHHHHHHHHHhccccCCCcccccC
Q 003940 622 YAFLI---SGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 668 (784)
Q Consensus 622 yA~li---~aLL~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (784)
++++. ..|.++++..|++ +|.++|+++.+.+.+.|||++.|.||+..
T Consensus 581 NsyLy~a~~~LA~LAe~LG~~e~A~~~~~~A~~Lr~aIn~~~WDee~GfY~Dyd 634 (786)
T PRK10137 581 ASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDETTGFYYDVR 634 (786)
T ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccCCcCCeEEEEe
Confidence 35555 6777788888875 48889999999999999999999888644
No 254
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=83.73 E-value=60 Score=37.27 Aligned_cols=305 Identities=16% Similarity=0.191 Sum_probs=165.6
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeecccCCCc-----cccccccccC
Q 003940 368 ERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSA-----ETEGATRKKE 442 (784)
Q Consensus 368 ~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfysa~DADS~-----~~~~~~~~~E 442 (784)
.+-.|--||..+- ++.-++-||-++|+..|++.|.+--+=|+.-+..|.+==|+.++-++. .-.++.-..|
T Consensus 167 ~~~~VNlFEtTIR----vLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF~sps~IPysdVnL~~~~A~~p~~~~~SStaE 242 (546)
T KOG2431|consen 167 KDRDVNLFETTIR----VLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAFSSPSPIPYSDVNLGTGTAHPPRWTGDSSTAE 242 (546)
T ss_pred cccceehhhhhHH----HHhhhhhhhccccchhHHHHHHHHHHHHHHhhcCCCCCCcceeecCCCcccCCCCCCccchhh
Confidence 3445667887765 888888899999999999999999999998888887766664442211 0001101111
Q ss_pred CceEEechHHHHHHhhhh-----H-HHHHHHhcccC---CCCcCCCCCCCC-CCCCCCcceeeccCCchHHHH-------
Q 003940 443 GAFYVWTSKEVEDILGEH-----A-ILFKEHYYLKP---TGNCDLSRMSDP-HNEFKGKNVLIELNDSSASAS------- 505 (784)
Q Consensus 443 GayY~Wt~~Ei~~~Lg~~-----~-~l~~~~f~l~~---~Gn~e~~~~~dp-~g~f~g~nvL~~~~~~~~~a~------- 505 (784)
=.----...++..+.|+. + ......+++.. +|-|. ...+| .|.|.+.+|-...... .+-+
T Consensus 243 vttiQlEfr~Ls~ltgd~kY~~~a~kv~ehih~~~~~~~dGLvP--i~in~~tG~F~~~tI~lGaRgD-SyYEYLlKQwl 319 (546)
T KOG2431|consen 243 VTTIQLEFRYLSRLTGDPKYEELAEKVTEHIHGLGKKKHDGLVP--IFINPNTGLFVGSTITLGARGD-SYYEYLLKQWL 319 (546)
T ss_pred heeeeeeHHHHHhhcCCchHHHHHHHHHHHHhccCccccCCeee--EEEcCCCCccccceEEeccccc-hHHHHHHHHHH
Confidence 111112234455555632 1 23333455532 23322 12344 3778886654333322 2222
Q ss_pred hcCCCH----HHHHHHHHHHHHHHHhhhc-------------CCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhc
Q 003940 506 KLGMPL----EKYLNILGECRRKLFDVRS-------------KRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAM 568 (784)
Q Consensus 506 ~~g~~~----~~l~~~l~~~r~kL~~~R~-------------~R~~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~ 568 (784)
+.|-+. +...+.++..++.|+..-. .+..|-.|-- ++ .+.+.+..+..-|=
T Consensus 320 Qtg~~~~~l~~dy~~am~gv~~~Llr~S~P~~~~fiGEl~~G~~fsPKMDHL-VC-----FlpGtL~lG~~~Gl------ 387 (546)
T KOG2431|consen 320 QTGKSLTYLRDDYIEAMEGVRKHLLRQSKPNKLWFIGELPHGLQFSPKMDHL-VC-----FLPGTLALGSTNGL------ 387 (546)
T ss_pred HcccchhHHHHHHHHHHHHHHHHHHhcCCCcceEEEEecccccccCcccceE-EE-----eecchhhhccccCC------
Confidence 123222 4445666777777775332 2444555543 11 12222222221111
Q ss_pred ccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCe---EEEEe-cCC--CCCC-CCCcchH----HHHHHHHHHHHHHcC
Q 003940 569 FNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHR---LQHSF-RNG--PSKA-PGFLDDY----AFLISGLLDLYEFGS 637 (784)
Q Consensus 569 ~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~---l~~~~-~dg--~~~~-~~~leDy----A~li~aLL~LYeaTg 637 (784)
|. ..+-++.|+.+.+-..+......+|. +.+.. .+. +.++ .+-++-+ -..++++.-||.+||
T Consensus 388 ---~~----~~~hl~lA~~l~~TCyqMY~~~~TGLaPEIv~Fn~~~~~~~~DiyvKp~D~HnLlRPEtVESlfylYriT~ 460 (546)
T KOG2431|consen 388 ---PA----SEEHLELAQELMETCYQMYRQNPTGLAPEIVHFNLYPQPGKNDIYVKPLDRHNLLRPETVESLFYLYRITG 460 (546)
T ss_pred ---Cc----chHHHHHHHHHHHHHHHHHccCcCCCCceEEEEeccCCCccCceeeccchhhcccChHHHhhhheeeEecC
Confidence 00 14588999999998877653433453 22221 111 2221 1222222 368999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhH-HHHHHHHHHHHHhCCC
Q 003940 638 GTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNS-VSVINLVRLASIVAGS 707 (784)
Q Consensus 638 d~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Ns-v~a~~L~rL~~lt~~~ 707 (784)
|.+|.++-=++++.+.+.- .-++|||-.-.+- .+...+.++ ..-| -+++-|--|+.+.+++
T Consensus 461 D~kYqewGW~if~sfekyt-rv~~ggytSi~nV-~~~~~~~RD-------kMESF~laETLKYLYLLf~DD 522 (546)
T KOG2431|consen 461 DRKYQEWGWEIFQSFEKYT-RVPSGGYTSIDNV-KDQKPKRRD-------KMESFWLAETLKYLYLLFSDD 522 (546)
T ss_pred CchHHHHhHHHHHHHHHhc-ccCCCCccchhhh-hhcCCchhh-------hHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999986653 4456777543221 111122222 1223 3777777888888763
No 255
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=83.69 E-value=3.6 Score=44.28 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=42.1
Q ss_pred CcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-cc--EEEEEcCCCCccHHHHH--HHHHHHhcCCCCCCcEEEECCC
Q 003940 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WF--VSIKVDREERPDVDKVY--MTYVQALYGGGGWPLSVFLSPD 213 (784)
Q Consensus 139 KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~F--V~VkvD~ee~pdi~~~y--~~~~q~~~g~~G~P~~vfl~pd 213 (784)
+-=|+.|+.+.|..||.|.. -|..+-++ +| ++|.+|-.-.|.+...- ....+.+ |+.-+|++++++|+
T Consensus 151 ~~gL~fFy~~~C~~C~~~ap------il~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l-~v~~~Pal~Lv~~~ 223 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAP------VIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHL-GVKYFPALYLVNPK 223 (256)
T ss_pred ceeEEEEECCCCchhHHHHH------HHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhc-CCccCceEEEEECC
Confidence 35588899999999999873 44444444 24 44445543223211100 0112222 77789999999998
Q ss_pred Ccee
Q 003940 214 LKPL 217 (784)
Q Consensus 214 g~pi 217 (784)
.+.+
T Consensus 224 t~~~ 227 (256)
T TIGR02739 224 SQKM 227 (256)
T ss_pred CCcE
Confidence 5543
No 256
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=83.68 E-value=19 Score=42.34 Aligned_cols=35 Identities=11% Similarity=0.079 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc
Q 003940 624 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 658 (784)
Q Consensus 624 ~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D 658 (784)
.+++...-||++|+|+-||+.-+.+.+.++..++-
T Consensus 375 ElvEStyyLYrATkdp~yL~vG~~~l~sLe~~~k~ 409 (622)
T KOG2429|consen 375 ELVESTYYLYRATKDPFYLHVGEDMLKSLEKYTKV 409 (622)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccC
Confidence 59999999999999999999999999999887754
No 257
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family. Members of this family are isozymes of pectate lyase (EC 4.2.2.2), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.
Probab=82.93 E-value=76 Score=34.91 Aligned_cols=92 Identities=12% Similarity=0.075 Sum_probs=59.5
Q ss_pred HHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCe
Q 003940 524 KLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHR 603 (784)
Q Consensus 524 kL~~~R~~R~~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~ 603 (784)
++......+...-+|+... .--|.-|+++++.+++ +.|.+++.++.+||+...+. +||
T Consensus 28 ~~~~~~~~~~~~TiDN~aT----~~e~~fLa~~y~~t~d----------------~~y~~A~~rgld~LL~aQyp--nGG 85 (290)
T TIGR02474 28 SVKNGGGGNESGTIDNGAT----VTEIRYLAQVYQQEKN----------------AKYRDAARKGIEYLLKAQYP--NGG 85 (290)
T ss_pred hhccccCCCCcccccCccH----HHHHHHHHHHHHhcCc----------------hhHHHHHHHHHHHHHhhhCC--CCC
Confidence 3334433366777888721 2337789999999887 88999999999999998875 566
Q ss_pred EEEEecCCC-CCCCCCcchHH--HHHHHHHHHHHHcC
Q 003940 604 LQHSFRNGP-SKAPGFLDDYA--FLISGLLDLYEFGS 637 (784)
Q Consensus 604 l~~~~~dg~-~~~~~~leDyA--~li~aLL~LYeaTg 637 (784)
+-..+.... -...-+.+|.+ .++..|.++++..+
T Consensus 86 WPQf~p~~~~Y~~~ITfND~am~~vl~lL~~i~~~~~ 122 (290)
T TIGR02474 86 WPQFYPLKGGYSDAITYNDNAMVNVLTLLDDIANGKD 122 (290)
T ss_pred cCcccCCcCCcccccccCcHHHHHHHHHHHHHHhccC
Confidence 554442211 11223344543 57777777776443
No 258
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=82.20 E-value=0.84 Score=53.43 Aligned_cols=71 Identities=20% Similarity=0.393 Sum_probs=49.4
Q ss_pred CcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEE---cCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003940 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV---DREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (784)
Q Consensus 139 KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~Vkv---D~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~ 215 (784)
|--+|.|+++||+-|+.... +|+ .+++-+.+.-=.|+| |--+ ..-++.|..+ ++.++|+.-++-|+-+
T Consensus 58 ~~~lVEFy~swCGhCr~FAP-tfk--~~A~dl~~W~~vv~vaaVdCA~-----~~N~~lCRef-~V~~~Ptlryf~~~~~ 128 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAP-TFK--KFAKDLEKWRPVVRVAAVDCAD-----EENVKLCREF-SVSGYPTLRYFPPDSQ 128 (606)
T ss_pred hhHHHHHHHhhhhhhhhcch-HHH--HHHHHHhcccceeEEEEeeccc-----hhhhhhHhhc-CCCCCceeeecCCccc
Confidence 45588999999999999986 776 488888765444444 4321 1123334443 8999999999999855
Q ss_pred eec
Q 003940 216 PLM 218 (784)
Q Consensus 216 pi~ 218 (784)
...
T Consensus 129 ~~~ 131 (606)
T KOG1731|consen 129 NKT 131 (606)
T ss_pred cCc
Confidence 543
No 259
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=82.10 E-value=2.9 Score=36.77 Aligned_cols=57 Identities=16% Similarity=0.176 Sum_probs=32.2
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vf 209 (784)
++.++-++|+||+...+ .+. ..+=.|..|.++..+. ... .+.++...|+...|..++
T Consensus 3 v~iyt~~~CPyC~~ak~-~L~------~~g~~~~~i~~~~~~~-~~~---~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKR-LLD------RKGVDYEEIDVDDDEP-EEA---REMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHH-HHH------HcCCCcEEEEecCCcH-HHH---HHHHHHhCCCCCcCEEEE
Confidence 34577899999998653 222 2222455555554432 111 223334457889998764
No 260
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=81.59 E-value=4.4 Score=34.15 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=33.7
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi 217 (784)
++.|+.+||++|+... +.++ ..+-.|..+ |.++.++.. .....+|...+|.. |++ |+.+
T Consensus 3 v~lys~~~Cp~C~~ak-~~L~------~~~i~~~~~--~v~~~~~~~-----~~~~~~g~~~vP~i-fi~--g~~i 61 (72)
T cd03029 3 VSLFTKPGCPFCARAK-AALQ------ENGISYEEI--PLGKDITGR-----SLRAVTGAMTVPQV-FID--GELI 61 (72)
T ss_pred EEEEECCCCHHHHHHH-HHHH------HcCCCcEEE--ECCCChhHH-----HHHHHhCCCCcCeE-EEC--CEEE
Confidence 4567889999999874 2332 223245444 444444321 12334578889986 555 4554
No 261
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=81.50 E-value=70 Score=33.08 Aligned_cols=76 Identities=13% Similarity=0.078 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhc
Q 003940 337 GQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDM 416 (784)
Q Consensus 337 ~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m 416 (784)
..+++.++++.+.. .. +.+|||--+.... +-..++-+..+.++..+.... +.......++++||.+.
T Consensus 50 ~~~~~~~~~~~l~~--~q-~~dG~~~~~~~~~-------~~~~~~T~~~~~~l~~~~~~~--~~~~~~~~~~~~~l~~~- 116 (300)
T cd00688 50 ADENIEKGIQRLLS--YQ-LSDGGFSGWGGND-------YPSLWLTAYALKALLLAGDYI--AVDRIDLARALNWLLSL- 116 (300)
T ss_pred chHHHHHHHHHHHh--cc-CCCCCccCCCCCC-------CcchHhHHHHHHHHHHcCCcc--ccCHHHHHHHHHHHHHc-
Confidence 44555555555544 11 4578886321111 444566777888777655433 45677889999999974
Q ss_pred cCCCCceee
Q 003940 417 IGPGGEIFS 425 (784)
Q Consensus 417 ~~~~Ggfys 425 (784)
+.++|||..
T Consensus 117 q~~dG~~~~ 125 (300)
T cd00688 117 QNEDGGFRE 125 (300)
T ss_pred cCCCCCeee
Confidence 677888754
No 262
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=81.27 E-value=2.3 Score=48.81 Aligned_cols=64 Identities=6% Similarity=0.065 Sum_probs=36.2
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEE-EEcCCCCccHHHHHHHH----HHHhcCCCCCCcEEEECCCCce
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSI-KVDREERPDVDKVYMTY----VQALYGGGGWPLSVFLSPDLKP 216 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~V-kvD~ee~pdi~~~y~~~----~q~~~g~~G~P~~vfl~pdg~p 216 (784)
++-++.+||+||+...+ +|+++=|+. .+|+++.+.....+... +...+|..++|+.++ +|+.
T Consensus 4 V~vys~~~Cp~C~~aK~----------~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi---~~~~ 70 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKS----------WFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV---GDVH 70 (410)
T ss_pred EEEEeCCCCHHHHHHHH----------HHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE---CCEE
Confidence 45688999999998753 444432222 34555666544322211 112246778899865 4555
Q ss_pred ec
Q 003940 217 LM 218 (784)
Q Consensus 217 i~ 218 (784)
+.
T Consensus 71 ig 72 (410)
T PRK12759 71 IG 72 (410)
T ss_pred Ee
Confidence 53
No 263
>KOG2431 consensus 1, 2-alpha-mannosidase [Carbohydrate transport and metabolism]
Probab=81.25 E-value=4 Score=46.22 Aligned_cols=100 Identities=13% Similarity=0.117 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHH
Q 003940 622 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLA 701 (784)
Q Consensus 622 yA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~ 701 (784)
-.=++-|||..|..+|++-||++|++|.+.+..-| ...++-=|....-+...-..++-..|. .-+.-+..-..+--|+
T Consensus 177 TIRvLGGLLSayHLsg~~~~L~kA~dlgdrLl~AF-~sps~IPysdVnL~~~~A~~p~~~~~S-StaEvttiQlEfr~Ls 254 (546)
T KOG2431|consen 177 TIRVLGGLLSAYHLSGDEMFLNKAEDLGDRLLPAF-SSPSPIPYSDVNLGTGTAHPPRWTGDS-STAEVTTIQLEFRYLS 254 (546)
T ss_pred hHHHHhhhhhhhccccchhHHHHHHHHHHHHHHhh-cCCCCCCcceeecCCCcccCCCCCCcc-chhhheeeeeeHHHHH
Confidence 45567899999999999999999999999999999 333432222111000000000110011 1111111222355899
Q ss_pred HHhCCCCchHHHHHHHHHHHHHHHH
Q 003940 702 SIVAGSKSDYYRQNAEHSLAVFETR 726 (784)
Q Consensus 702 ~lt~~~~~~~y~e~A~~~l~~~~~~ 726 (784)
+++|+ +.|.+.|+++.+.+.+.
T Consensus 255 ~ltgd---~kY~~~a~kv~ehih~~ 276 (546)
T KOG2431|consen 255 RLTGD---PKYEELAEKVTEHIHGL 276 (546)
T ss_pred hhcCC---chHHHHHHHHHHHHhcc
Confidence 99996 78999999988876543
No 264
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.97 E-value=3.9 Score=38.99 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=29.8
Q ss_pred cCCcEEEEEcc--------cCChhhhhhhhcccCCHHHHHHHh---cccEEEEEcCCCCcc
Q 003940 137 RDVPIFLSIGY--------STCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPD 186 (784)
Q Consensus 137 e~KpI~l~~~~--------~wC~wC~~Me~etf~d~eVa~~ln---~~FV~VkvD~ee~pd 186 (784)
.||-|||.|.+ +||+.|.+-|. -|.+.|+ ++-..|.|++-++|-
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEP------vi~~alk~ap~~~~~v~v~VG~rp~ 78 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEP------VINEALKHAPEDVHFVHVYVGNRPY 78 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhH------HHHHHHHhCCCceEEEEEEecCCCc
Confidence 45559999875 69999998663 4444454 456667777766653
No 265
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=80.85 E-value=1.8 Score=47.33 Aligned_cols=40 Identities=25% Similarity=0.207 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 003940 384 QLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (784)
Q Consensus 384 ~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfy 424 (784)
.-|..++++|+.++|+.|++.+.+.++||+. .+-|+||+-
T Consensus 43 ~ei~fLa~~y~~t~d~~y~~A~~kgl~ylL~-aQypnGGWP 82 (289)
T PF09492_consen 43 TEIRFLARVYQATKDPRYREAFLKGLDYLLK-AQYPNGGWP 82 (289)
T ss_dssp HHHHHHHHHHHHCG-HHHHHHHHHHHHHHHH-HS-TTS--B
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHH-hhCCCCCCC
Confidence 4577889999999999999999999999996 667899984
No 266
>COG4833 Predicted glycosyl hydrolase [Carbohydrate transport and metabolism]
Probab=79.09 E-value=3.7 Score=44.10 Aligned_cols=97 Identities=23% Similarity=0.334 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-CCCCCCCCcchHH
Q 003940 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GPSKAPGFLDDYA 623 (784)
Q Consensus 545 WNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~d-g~~~~~~~leDyA 623 (784)
|.+-.+.-+..|+.-... +.=++.+.+...-+. .|+ |......+-+|-+
T Consensus 47 WqAHlldclvDA~lR~~~----------------~Arr~ri~~T~r~~~--------------vRN~G~l~shdyYDDma 96 (377)
T COG4833 47 WQAHLLDCLVDAQLRDPQ----------------PARRARINRTVRSHR--------------VRNFGWLNSHDYYDDMA 96 (377)
T ss_pred HHHHHHHHHHHHHhcCCc----------------HhHHHHHHHHHhhhh--------------ccccccccchhhhhhHH
Confidence 567777788888765443 444555555442221 222 3445567888999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHhccccCCCc--------ccccCCCCCc
Q 003940 624 FLISGLLDLYEFGSGTKWLVWAI-ELQNTQDELFLDREGGG--------YFNTTGEDPS 673 (784)
Q Consensus 624 ~li~aLL~LYeaTgd~~yL~~A~-~L~~~~~~~F~D~~~Gg--------yf~t~~~~~~ 673 (784)
+++.|+-++|.++| .+++.|. .+.+.+.+-..|..+|| ||+++..+|-
T Consensus 97 WlALAl~Ra~Kv~g--vr~~~alp~l~~~~v~Gw~D~~gGg~pWR~q~~f~N~P~NgPa 153 (377)
T COG4833 97 WLALALERADKVAG--VRRRRALPKLTNQFVEGWVDEDGGGIPWRKQDQFFNAPANGPA 153 (377)
T ss_pred HHHHHHHhhhcccc--eeccccchhHHHhhhhccccccCCcccccccceeecCCCCCcc
Confidence 99999999999999 7777776 45566666667777776 4555555543
No 267
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=77.68 E-value=42 Score=40.94 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCC-CCcchHHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAP-GFLDDYAF 624 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~~~~-~~leDyA~ 624 (784)
++++.||..++ +.+.|++..+||.+...+ +|.+++. +-+|++... -++|-|++
T Consensus 301 a~~a~AL~~~G-----------------------~~~~a~~~~~~l~~~~~~--~G~~lq~y~vdG~~~~~~iQlD~~g~ 355 (648)
T TIGR01535 301 YQVANAFLAAG-----------------------DVDSALRSLDYLAKVQQD--NGMFPQNSWVDGKPYWTGIQLDETAF 355 (648)
T ss_pred HHHHHHHHHCC-----------------------CHHHHHHHHHHHHHHhcc--CCCcCceeccCCCCCCCCccccHHHH
Confidence 68888888775 457888999999887754 4665555 468877654 67788899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHH---HH
Q 003940 625 LISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR---LA 701 (784)
Q Consensus 625 li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~r---L~ 701 (784)
.|.++..+++... ..+....+.+.+++... +....-+. ++...+..|+..|....+|.+ |+
T Consensus 356 ~i~~~~~l~~~~~-~~~~~~vk~aadfl~~~-~p~p~~d~--------------WEer~g~~~~T~a~v~aaL~~Aa~iA 419 (648)
T TIGR01535 356 PILLAYRLHRYDH-AFYDKMLKPAADFIVKN-GPKTGQER--------------WEEIGGYSPSTLAAEIAGLTAAADIA 419 (648)
T ss_pred HHHHHHHHHHcCc-HHHHHHHHHHHHHHHHc-CCCCCCCc--------------ccccCCcCchhHHHHHHHHHHHHHHH
Confidence 9999888888544 44556667777777664 32221111 222235556666665566664 44
Q ss_pred HHhCCCC-chHHHHHHHHHHHHHHH
Q 003940 702 SIVAGSK-SDYYRQNAEHSLAVFET 725 (784)
Q Consensus 702 ~lt~~~~-~~~y~e~A~~~l~~~~~ 725 (784)
...|+.. ...|++.|+++-+.+..
T Consensus 420 ~~~g~~~~a~~w~~~Ad~i~~~i~~ 444 (648)
T TIGR01535 420 EQNGDAGSAQKYRETADNWQKLIEN 444 (648)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHH
Confidence 4444421 24466666665555443
No 268
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase. This model identifies 2,3-oxidosqualene cyclases from Stigmatella aurantiaca which produces cycloartenol, and Gemmata obscuriglobus and Methylococcus capsulatus which each produce the closely related sterol, lanosterol.
Probab=77.67 E-value=37 Score=41.36 Aligned_cols=157 Identities=18% Similarity=0.139 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC---------CCCC
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS---------KAPG 617 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~---------~~~~ 617 (784)
++++.||.+++.. + +++-...+++.+||++.-.....|.....+++..+ ....
T Consensus 310 ala~~AL~e~g~~--~----------------~~~~~~l~kA~~wL~~~Q~~~~~gd~~~~~~~~~~GGW~f~~~~~~~p 371 (634)
T TIGR03463 310 AFAVQALAATPET--A----------------GRHRRMLERAARFLEANQMLEDTAEPQRFFRDPAKGGWCFSDGDHGWP 371 (634)
T ss_pred HHHHHHHHHcCCC--c----------------hhhhHHHHHHHHHHHHhcCCcCCCCchhcCCCCCCCccccccCCCCCC
Confidence 8889999886432 1 34557778899999877642222211111121111 1224
Q ss_pred CcchHHHHHHHHHHHHHHcC------CHHHHHHHHHHHHHHHHhccccCCCccccc-CCCCCcccc--cc-----ccCCC
Q 003940 618 FLDDYAFLISGLLDLYEFGS------GTKWLVWAIELQNTQDELFLDREGGGYFNT-TGEDPSVLL--RV-----KEDHD 683 (784)
Q Consensus 618 ~leDyA~li~aLL~LYeaTg------d~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t-~~~~~~l~~--R~-----k~~~D 683 (784)
..+|-|.++.||+.+..... ....+.+|.+.+..+.+ + +|||..- ...+...+- .. .-..|
T Consensus 372 dsD~Ta~~L~Al~~~~~~~~~~~~~~~~~~l~~av~~Ll~~Qn----~-dGGw~~y~~~~~~~~l~~~~~~~~f~~~~~d 446 (634)
T TIGR03463 372 VSDCTAEALSASLVLEPLGLNPEERVPQARLQDAVEFILSRQN----E-DGGFGTYERQRGPRVLELLNPSEMFSTCMTD 446 (634)
T ss_pred ccccHHHHHHHHHHHhhcCCcccccccHHHHHHHHHHHHHhcC----C-CCCEeccCCCCcHHHHhcCChHHhhcccccC
Confidence 56888999999998865322 12445555554443322 2 4665421 111111100 00 01226
Q ss_pred CCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 003940 684 GAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 726 (784)
Q Consensus 684 ~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~ 726 (784)
.+.+..++.++.+|..+.........++..+..++.++.+...
T Consensus 447 ~~~~d~Ta~~l~aL~~~~~~~~~~~~~~i~~ai~rav~~L~~~ 489 (634)
T TIGR03463 447 VSYVECTSSCLQALAAWRKHHPHVPDGRITRAISRGVRFLRSR 489 (634)
T ss_pred CCcCcHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHh
Confidence 6677777777777776654332110123344455555554443
No 269
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=77.65 E-value=34 Score=36.27 Aligned_cols=61 Identities=11% Similarity=0.113 Sum_probs=45.2
Q ss_pred cccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 003940 354 HDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (784)
Q Consensus 354 ~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfy 424 (784)
|-+-+|||.- | -.+-+=-....|..+..|++|.+...-+ .++..++++||... +.++|.|-
T Consensus 9 y~~~DGsfs~------f-~~~~~~s~WLTAfv~k~f~~a~~~i~vd--~~~i~~a~~wL~~~-Q~~dG~F~ 69 (246)
T PF07678_consen 9 YRRSDGSFSA------F-SSDSPSSTWLTAFVVKVFSQAKKYIFVD--ENVICRAVKWLISQ-QQPDGSFE 69 (246)
T ss_dssp TB-TTSSBBS------S-TTTSSBBHHHHHHHHHHHHHHTTTS-CE--HHHHHHHHHHHHHH-BETTSEB-
T ss_pred CCCCCCCeec------c-ccCCcccHHHHHHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHh-hcCCCccc
Confidence 3456788874 3 3334667888999999999999885433 56779999999998 77888884
No 270
>PLN02308 endoglucanase
Probab=76.46 E-value=1.7e+02 Score=34.67 Aligned_cols=112 Identities=17% Similarity=0.187 Sum_probs=66.0
Q ss_pred cCCCC---CCCCCCCChhHHH--HHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCCeEEEEecC-----C
Q 003940 299 RFGGF---GSAPKFPRPVEIQ--MMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVD-----E 368 (784)
Q Consensus 299 ~~GGf---g~aPKFP~p~~l~--~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD-----~ 368 (784)
..||| |.--||-.|.... +|+..+..-.+. ...+.+.+++.+.--+|=|.+ .++. .|+||.=..| .
T Consensus 72 lsGGWyDAGD~~Ky~~p~a~s~t~L~w~~~e~~~~-~~~e~~~~ldeikw~~D~llk--m~~~-~~~vy~qVg~~~~dh~ 147 (492)
T PLN02308 72 LTGGYYDAGDNVKFGFPMAFTTTLMSWSIIDFGRT-MGPELENAVKAVKWATDYLMK--ATAI-PNVVYVQVGDAYSDHN 147 (492)
T ss_pred CCCCceeCCCcCeecCchHHHHHHHHHHHHHhHhh-hcchhHHHHHHHHHHHHHHHH--hcCC-CCeEEEEecCCCCCcc
Confidence 47888 6667887764332 222212211111 011235677777777777766 4443 4677653333 3
Q ss_pred CCCCCCCchh---H---------H-HHHHHHHHHHHHHHccC--ChH----HHHHHHHHHHHHHH
Q 003940 369 RWHVPHFEKM---L---------Y-DQGQLANVYLDAFSLTK--DVF----YSYICRDILDYLRR 414 (784)
Q Consensus 369 ~W~vPHFEKM---L---------y-DNA~Ll~~ya~Ay~~t~--d~~----y~~~A~~t~~fl~~ 414 (784)
.|..|+-.++ + - --+..+.+++.|+++++ |+. +++.|+++.+|..+
T Consensus 148 ~W~~Pe~~~~~R~~y~~~~~~pgSd~a~~~AAAlA~as~vf~~~D~~YA~~lL~~Ak~ly~fa~~ 212 (492)
T PLN02308 148 CWERPEDMDTLRTVYKIDPSHPGSDVAGETAAALAAASIVFRKRDPAYSRLLLDRAVRVFAFADK 212 (492)
T ss_pred CCCChhHcCCcceEEecCCCCCcchHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 5666643211 1 1 24678889999999988 555 46778888888877
No 271
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=73.85 E-value=79 Score=35.76 Aligned_cols=139 Identities=17% Similarity=0.160 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-----
Q 003940 583 EVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL----- 657 (784)
Q Consensus 583 e~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~----- 657 (784)
+.|+.+...+.+... .|.+.+..+.|....-+..|---+++.++-++++.|+|..+++......+.+.+.+.
T Consensus 50 ~~a~~~L~~~~~~~~---~G~ipn~~~~~~~~~Y~s~Dat~wfl~~l~~Y~~~t~D~~~l~~~~~~i~~il~~~~~g~~~ 126 (370)
T PF06202_consen 50 EEARNILATFAGTQR---HGLIPNELRDGEEPRYNSVDATLWFLIALQEYYRWTGDYSFLRELYPAIEEILEWYADGTDF 126 (370)
T ss_pred HHHHHHHHHHHHhhh---cCcccCcccCCCCCCCCCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 455555555444432 478888776665544455666779999999999999999998766655444444432
Q ss_pred ----ccCCCcccccCCCCCccccccccCC---------CCCCCChhHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHH
Q 003940 658 ----DREGGGYFNTTGEDPSVLLRVKEDH---------DGAEPSGNSVSVINLVRLASIVA---GSKSDYYRQNAEHSLA 721 (784)
Q Consensus 658 ----D~~~Ggyf~t~~~~~~l~~R~k~~~---------D~a~PS~Nsv~a~~L~rL~~lt~---~~~~~~y~e~A~~~l~ 721 (784)
|+++ |+...... ..-.-+++.. +++.-.-|+....+|..++.+.. ++...+|++.|+++-+
T Consensus 127 ~~~~d~~~-gl~~~~~~--~~~~tWmD~~~~g~~~tpr~g~~vEIqal~y~AL~~~~~la~~~~~~~a~~~~~~A~~lk~ 203 (370)
T PF06202_consen 127 GIRVDPED-GLIYSGNG--LNNQTWMDARNDGRPVTPRDGAAVEIQALWYNALRFAAELAEKFGDELAARYREWAERLKE 203 (370)
T ss_pred ccccccCC-CeeecCCC--CCCCCccccccCCccccCCCCcchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 2222 22222110 0001111111 12222345555555555554443 3223689999999999
Q ss_pred HHHHHH
Q 003940 722 VFETRL 727 (784)
Q Consensus 722 ~~~~~l 727 (784)
.|....
T Consensus 204 ~F~~~F 209 (370)
T PF06202_consen 204 SFEKRF 209 (370)
T ss_pred HHHHHH
Confidence 998876
No 272
>PRK10824 glutaredoxin-4; Provisional
Probab=73.25 E-value=12 Score=35.36 Aligned_cols=50 Identities=16% Similarity=0.365 Sum_probs=27.3
Q ss_pred HHHHHHhhcCCcEEEEEcc----cCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHH
Q 003940 129 EAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVD 188 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~----~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~ 188 (784)
+.+++.-+++ ||+|..-. +||++|+...+ .| +-++-.|-.|.+ ++++++.
T Consensus 6 ~~v~~~I~~~-~Vvvf~Kg~~~~p~Cpyc~~ak~-lL------~~~~i~~~~idi--~~d~~~~ 59 (115)
T PRK10824 6 EKIQRQIAEN-PILLYMKGSPKLPSCGFSAQAVQ-AL------SACGERFAYVDI--LQNPDIR 59 (115)
T ss_pred HHHHHHHhcC-CEEEEECCCCCCCCCchHHHHHH-HH------HHcCCCceEEEe--cCCHHHH
Confidence 4455555554 45555443 69999998753 33 223334655544 4455543
No 273
>PLN02613 endoglucanase
Probab=72.46 E-value=2.1e+02 Score=33.94 Aligned_cols=145 Identities=15% Similarity=0.266 Sum_probs=78.2
Q ss_pred cCCCC---CCCCCCCChhH--HHHHHHhhhhcccc-CCCCCcHHHHHHHHHHHHHHHc-----CCCcccCCCe--EEEEe
Q 003940 299 RFGGF---GSAPKFPRPVE--IQMMLYHSKKLEDT-GKSGEASEGQKMVLFTLQCMAK-----GGIHDHVGGG--FHRYS 365 (784)
Q Consensus 299 ~~GGf---g~aPKFP~p~~--l~~Ll~~~~~~~~~-~~~~~~~~~~~~~~~TL~~m~~-----GGi~D~v~GG--F~RYs 365 (784)
.-||| |.--||-.|.. ..+|+..+..-.+. .....-+.+++.+.--||=|.+ ++++-|||-| .|.
T Consensus 70 lsGGwyDAGD~~Ky~~p~a~s~t~L~w~~~e~~~~~~s~~~~~d~ldeikw~lD~llkm~~~~~~~~~QVGdg~~dH~-- 147 (498)
T PLN02613 70 LTGGYYDAGDNVKFGWPMAFTVTLLSWAAIEYQNEISSVNQLGYLRSAIRWGTDFILRAHTSPTTLYTQVGDGNADHQ-- 147 (498)
T ss_pred CCCCceeCCCCceecCchHHHHHHHHHHHHHhHHHHhhcCCchHHHHHHHHHHHHHHHhccCCCeEEEEeCCCCcccc--
Confidence 47888 66678866532 23333222111110 0011235666666665555443 4566667644 233
Q ss_pred cCCCCCCCCCc-------------hhHHHHHHHHHHHHHHHHccCC--hH----HHHHHHHHHHHHHHhc--cCCCCcee
Q 003940 366 VDERWHVPHFE-------------KMLYDQGQLANVYLDAFSLTKD--VF----YSYICRDILDYLRRDM--IGPGGEIF 424 (784)
Q Consensus 366 vD~~W~vPHFE-------------KMLyDNA~Ll~~ya~Ay~~t~d--~~----y~~~A~~t~~fl~~~m--~~~~Ggfy 424 (784)
.|..|.-. +.--.-+..+.+++.|++++++ +. +++.|+++.+|..+.= ....++||
T Consensus 148 ---~W~~Pe~~~~~R~~~~~t~~~pgTd~a~~~AAALAaas~vfk~~D~~yA~~~L~~Ak~ly~~a~~~~g~y~~~~~~y 224 (498)
T PLN02613 148 ---CWERPEDMDTPRTLYKITSSSPGSEAAGEAAAALAAASLVFKDVDSSYSSKLLNHARSLFEFADKYRGSYQASCPFY 224 (498)
T ss_pred ---ccCCccccCCCCeeEecCCCCCccHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCcc
Confidence 47767532 1221266789999999999975 44 5788899999998631 11112343
Q ss_pred ecccCCCccccccccccCCceEEechHHHHHHhhhh
Q 003940 425 SAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH 460 (784)
Q Consensus 425 sa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~ 460 (784)
.+.+... -| ..|...|+..++|+.
T Consensus 225 ~s~s~~~---------DE---l~WAAawLy~aTGd~ 248 (498)
T PLN02613 225 CSYSGYQ---------DE---LLWAAAWLYKATGEK 248 (498)
T ss_pred cccCccc---------hH---HHHHHHHHHHHhCCH
Confidence 3211000 00 257888888888854
No 274
>PLN03012 Camelliol C synthase
Probab=71.16 E-value=28 Score=43.10 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEec---CCC----CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003940 583 EVAESAASFIRRHLYDEQTHRLQHSFR---NGP----SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQ 649 (784)
Q Consensus 583 e~A~~~a~~l~~~l~d~~~G~l~~~~~---dg~----~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~ 649 (784)
+..+++.+||+++-.. +|+...++. +.. .....++.--|+++.||+...+...|+.-+.+|.+.+
T Consensus 639 ~~Irrav~fLls~Q~~--DGGWGEs~~Sc~~~~y~~~~~~~S~~~qTaWAl~aLi~ag~~~~~~~~i~Rg~~~L 710 (759)
T PLN03012 639 EAIRKGVHFLLAAQKD--NGGWGESYLSCPKKIYIAQEGEISNLVQTAWALMGLIHAGQAERDPIPLHRAAKLI 710 (759)
T ss_pred HHHHHHHHHHHHhcCC--CCCcCCCCCCCCCccccCCCCCCCcHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence 5678889999987654 455544432 211 0123566777999999998876666666677776654
No 275
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=70.21 E-value=12 Score=31.93 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=14.2
Q ss_pred EEEcccCChhhhhhhhc
Q 003940 143 LSIGYSTCHWCHVMEVE 159 (784)
Q Consensus 143 l~~~~~wC~wC~~Me~e 159 (784)
..|....|+||..+++.
T Consensus 2 ~~f~d~~Cp~C~~~~~~ 18 (98)
T cd02972 2 VEFFDPLCPYCYLFEPE 18 (98)
T ss_pred eEEECCCCHhHHhhhHH
Confidence 46788899999999873
No 276
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). GGTase-IIs are a subgroup of the protein prenyltransferase family of lipid-modifying enzymes. PTases catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between cysteine residues at or near the C-terminus of protein acceptors and the C1 atom of isoprenoid lipids (geranylgeranyl (20-carbon) in the case of GGTase-II ). GGTase-II catalyzes alkylation of both cysteine residues in Rab proteins containing carboxy-terminal "CC", "CXCX" or "CXC" motifs. PTases are heterodimeric with both alpha and beta subunits required for catalytic activity. In contrast to other prenyltr
Probab=69.73 E-value=1.7e+02 Score=31.72 Aligned_cols=68 Identities=19% Similarity=0.366 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcch--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCC
Q 003940 585 AESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDD--YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 662 (784)
Q Consensus 585 A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leD--yA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~G 662 (784)
..++.+||.+.... +|+|. |.+.. ..| |+|.+.|.+.+ + +...|.+ .+.+.+.+.+.- +...|
T Consensus 198 ~~~~~~~L~~~q~~--~GGf~-----gr~~k---~~D~~ysf~~~a~l~~--l-~~~~~~~-~~~l~~~l~~~q-~~~~G 262 (287)
T cd02894 198 RDRLGWWLCERQLP--SGGLN-----GRPEK---LPDVCYSWWVLSSLKI--I-GRLHWIN-KNKLKNFILACQ-DEEDG 262 (287)
T ss_pred HHHHHHHHHHhCCC--CCCcC-----CCCCC---CCchhHhhHHHHHHHH--h-ccccccC-HHHHHHHHHHhc-CCCCC
Confidence 45577888776532 36662 22211 122 45555555533 3 4445665 788888887765 44568
Q ss_pred ccccc
Q 003940 663 GYFNT 667 (784)
Q Consensus 663 gyf~t 667 (784)
||-..
T Consensus 263 Gf~~~ 267 (287)
T cd02894 263 GFADR 267 (287)
T ss_pred CcCCC
Confidence 87543
No 277
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases. This family of enzymes catalyzes the cyclization of the triterpenes squalene or 2-3-oxidosqualene to a variety of products including hopene, lanosterol, cycloartenol, amyrin, lupeol and isomultiflorenol.
Probab=69.29 E-value=30 Score=41.99 Aligned_cols=55 Identities=20% Similarity=0.256 Sum_probs=38.4
Q ss_pred CCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 003940 357 VGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (784)
Q Consensus 357 v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfy 424 (784)
-+|+|+. .|.+.+ .|..+..+.++..+.+...+. ..++++++||++. +.++||+.
T Consensus 475 ~DGsw~g-----~wg~~y----~YgT~~al~aL~~~G~~~~~~---~~i~rA~~~L~~~-Q~~DGGWg 529 (621)
T TIGR01787 475 ADGSWFG-----RWGVNY----TYGTGFVLSALAAAGRTYRNC---PEVQKACDWLLSR-QMPDGGWG 529 (621)
T ss_pred CCCCCcc-----cCCCCC----chhHHHHHHHHHHhCCcccCC---HHHHHHHHHHHhh-cCCCCCCC
Confidence 4577763 577653 466777788887765443332 7789999999985 67889884
No 278
>PF05592 Bac_rhamnosid: Bacterial alpha-L-rhamnosidase; InterPro: IPR008902 This entry consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria [].; PDB: 2OKX_B 3CIH_A.
Probab=67.50 E-value=93 Score=36.39 Aligned_cols=192 Identities=15% Similarity=0.066 Sum_probs=92.7
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhcCCC--CCCCCchhhhchHHHH-HHHHHHHHHHhhhhhhhhcccCCCCCCChH
Q 003940 503 SASKLGMPLEKYLNILGECRRKLFDVRSKRP--RPHLDDKVIVSWNGLV-ISSFARASKILKSEAESAMFNFPVVGSDRK 579 (784)
Q Consensus 503 ~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~--~P~lDdKiitsWNal~-I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~ 579 (784)
.+..|..+.+.+.++.+.++..++..-..-+ =|.+||+ ..|.|=+ +.+++.. -.+++ .
T Consensus 108 ~~g~F~~sd~~ln~i~~~~~~T~~~n~~~~~~Dcp~RdER--~~w~GD~~~~~~~~~-~~~~~----------------~ 168 (509)
T PF05592_consen 108 QAGSFSCSDPLLNRIWEMSRRTLRSNMQDVFTDCPKRDER--LGWTGDARVSALTAY-YSFGD----------------A 168 (509)
T ss_dssp ---EEEES-HHHHHHHHHHHHHHHHTBSSSB-SBTTT-T-----BHHHHHHHHHHHH-CCT------------------H
T ss_pred ccCceecCcHHHHHHHHHHHHHHHhhCCCCceECcchhhh--cCCcchHHHHHHHHH-HhCCc----------------H
Confidence 3445666778888888888887776444322 2677666 3465544 3333333 23333 2
Q ss_pred HHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc
Q 003940 580 EYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYA-FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 658 (784)
Q Consensus 580 ~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA-~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D 658 (784)
...++..+.+...... +|.+....-... ......-+|+ +.+..+-++|..|||.++++..-...+...+.+..
T Consensus 169 ---~l~~~~l~~~~~~q~~--~G~~p~~~P~~~-~~~~~~~~w~l~~i~~~~~~y~~tGD~~~l~~~~~~~~~~l~~~~~ 242 (509)
T PF05592_consen 169 ---ALYRKWLRDFADSQRP--DGLLPSVAPSYG-GGGFGIPDWSLAWIIIPWDYYLYTGDREFLEEYYPAMKRYLDYLER 242 (509)
T ss_dssp ---HHHHHHHHHHHGGTTT--STT-SSBSS----SSGGGBHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHhhcc--cCCceEEecccC-CCCCCCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 2344444444443322 455443221100 1122233443 67889999999999998876555544444444432
Q ss_pred cCCCcccccCCCCCccccccccCCCCC---------CC---ChhHH---HHHHHHHHHHHhCCCC-chHHHHHHHHHHHH
Q 003940 659 REGGGYFNTTGEDPSVLLRVKEDHDGA---------EP---SGNSV---SVINLVRLASIVAGSK-SDYYRQNAEHSLAV 722 (784)
Q Consensus 659 ~~~Ggyf~t~~~~~~l~~R~k~~~D~a---------~P---S~Nsv---~a~~L~rL~~lt~~~~-~~~y~e~A~~~l~~ 722 (784)
..+.+-. ........|+. .+ ..|+. ++..+.+|+.++|+++ ...|+++|+++-++
T Consensus 243 ~~~~~~~---------~~~~~~~~DW~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~lA~~lg~~~~a~~y~~~a~~lk~a 313 (509)
T PF05592_consen 243 RVDDGLD---------GLPGWGFGDWLAPGNDGDGPTPGATITNALYYYALRAAAELAEALGKDEDAAEYRARAERLKAA 313 (509)
T ss_dssp TB-TSSB----------CCSB--S-SS----TT---SCCEEHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred hCCcccc---------CCCCCceeecCCccCcccccchHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 2211000 00111111222 12 13444 3444668888888622 25689999888888
Q ss_pred HHHHHH
Q 003940 723 FETRLK 728 (784)
Q Consensus 723 ~~~~l~ 728 (784)
+...+-
T Consensus 314 ~~~~~~ 319 (509)
T PF05592_consen 314 INRHFW 319 (509)
T ss_dssp HHHHCE
T ss_pred HHHhcc
Confidence 876654
No 279
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=67.38 E-value=65 Score=40.37 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=44.8
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 003940 542 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 607 (784)
Q Consensus 542 itsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~ 607 (784)
+|+|-|++...|++.+..++.+. +..+|.+.+..+.+.|.+.+||+++|.++..
T Consensus 560 l~sWMa~~a~~M~~IA~~L~~~d------------~~~ef~~~~~~i~~~l~~~hWdeedgfYyD~ 613 (801)
T PF03200_consen 560 LTSWMAFFALNMARIALELGKED------------DAYEFFEHFEYISDALNKLHWDEEDGFYYDV 613 (801)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcc------------cHHHHHHHHHHHHHHHHHhcCCcccCceeee
Confidence 68999999999999999998632 1135779999999999999999988876654
No 280
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4.2.2.2 from EC), also called polygalacturonic transeliminase and alpha-1,4-D-endopolygalacturonic acid lyase.; PDB: 1R76_A 1GXM_B 1GXN_A 1GXO_A.
Probab=67.00 E-value=20 Score=39.30 Aligned_cols=101 Identities=14% Similarity=0.043 Sum_probs=60.9
Q ss_pred CCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-CC
Q 003940 534 RPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GP 612 (784)
Q Consensus 534 ~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~d-g~ 612 (784)
..-+|+..- ..-|.-|+++|+.+++ ++|.+++.+..+||++.-+. +||+-..|-. +.
T Consensus 33 ~~TiDN~aT----~~ei~fLa~~y~~t~d----------------~~y~~A~~kgl~ylL~aQyp--nGGWPQ~yP~~~~ 90 (289)
T PF09492_consen 33 NSTIDNDAT----TTEIRFLARVYQATKD----------------PRYREAFLKGLDYLLKAQYP--NGGWPQFYPLRGG 90 (289)
T ss_dssp SCE-GGGTT----HHHHHHHHHHHHHCG-----------------HHHHHHHHHHHHHHHHHS-T--TS--BSECS--SG
T ss_pred cCcccChhH----HHHHHHHHHHHHHhCC----------------hHHHHHHHHHHHHHHHhhCC--CCCCCccCCCCCC
Confidence 445666622 3457889999999988 89999999999999998886 6887766532 11
Q ss_pred CCCCCCcchHH--HHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHhc
Q 003940 613 SKAPGFLDDYA--FLISGLLDLYEFGSGT---------KWLVWAIELQNTQDELF 656 (784)
Q Consensus 613 ~~~~~~leDyA--~li~aLL~LYeaTgd~---------~yL~~A~~L~~~~~~~F 656 (784)
-...-+.+|.| -++.=|.+.++..++. ++.+...+-.+.+...-
T Consensus 91 Y~~~ITfNDdam~~vl~lL~~v~~~~~~~~~v~~~~~~r~~~A~~kgi~ciL~tQ 145 (289)
T PF09492_consen 91 YHDHITFNDDAMVNVLELLRDVAEGKGDFAFVDESLRARARAAVDKGIDCILKTQ 145 (289)
T ss_dssp GGGSEE-GGGHHHHHHHHHHHHHCT-TTSTTS-HHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCceEEccHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11223444554 4667777777777766 44444444444444443
No 281
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=66.54 E-value=5.5 Score=37.77 Aligned_cols=23 Identities=9% Similarity=0.215 Sum_probs=19.3
Q ss_pred hcCCcEEEEEcccCChhhhhhhh
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEV 158 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~ 158 (784)
.+.+++++.|+-.+|+||+.|+.
T Consensus 3 ~~a~~~i~~f~D~~Cp~C~~~~~ 25 (154)
T cd03023 3 PNGDVTIVEFFDYNCGYCKKLAP 25 (154)
T ss_pred CCCCEEEEEEECCCChhHHHhhH
Confidence 35677888899999999999974
No 282
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement. Class II terpene cyclases include squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY), these integral membrane proteins catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. The protein prenyltransferases include protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II) which catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Alpha (2)-M is a major carrier protein in serum and involved in the immobilization and entrapment of proteases. PZP is a pregnancy associated protein.
Probab=66.31 E-value=86 Score=32.38 Aligned_cols=128 Identities=14% Similarity=0.015 Sum_probs=67.4
Q ss_pred CHHHHHHHHHHHHhhccccCCCCCCCCCC--CChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCC
Q 003940 281 PQNALRLCAEQLSKSYDSRFGGFGSAPKF--PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVG 358 (784)
Q Consensus 281 ~~~~l~~~~~~l~~~~D~~~GGfg~aPKF--P~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~ 358 (784)
....++.+++.|.+.- ...|||+..+.- |.+..-.+.+......+..+ ....+.+.+.++-+... ...+
T Consensus 50 ~~~~~~~~~~~l~~~q-~~dG~~~~~~~~~~~~~~~T~~~~~~l~~~~~~~-----~~~~~~~~~~~~~l~~~---q~~d 120 (300)
T cd00688 50 ADENIEKGIQRLLSYQ-LSDGGFSGWGGNDYPSLWLTAYALKALLLAGDYI-----AVDRIDLARALNWLLSL---QNED 120 (300)
T ss_pred chHHHHHHHHHHHhcc-CCCCCccCCCCCCCcchHhHHHHHHHHHHcCCcc-----ccCHHHHHHHHHHHHHc---cCCC
Confidence 3455677777777654 457999887663 33332222222221111000 01122333333333331 2346
Q ss_pred CeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCce
Q 003940 359 GGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEI 423 (784)
Q Consensus 359 GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggf 423 (784)
|||..+.-... ..++-+.-....+..+.++..+..... ...+.++++||.+.. .++|||
T Consensus 121 G~~~~~~~~~~-~~~~~~~~~~~t~~al~aL~~~~~~~~----~~~~~~~~~~l~~~q-~~~g~~ 179 (300)
T cd00688 121 GGFREDGPGNH-RIGGDESDVRLTAYALIALALLGKLDP----DPLIEKALDYLLSCQ-NYDGGF 179 (300)
T ss_pred CCeeeecCCCC-cccCCCCcccHHHHHHHHHHHcCCCCC----cHHHHHHHHHHHHHh-cCCCCc
Confidence 78775432211 012223344557778888877665543 567889999999854 678888
No 283
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=65.90 E-value=10 Score=39.47 Aligned_cols=53 Identities=34% Similarity=0.497 Sum_probs=36.7
Q ss_pred hcCCcEEEEEcccCChh-hhhhhhcccCCHHHHHHHh----c--ccEEEEEcCCC-CccHHHHH
Q 003940 136 KRDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLN----D--WFVSIKVDREE-RPDVDKVY 191 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~w-C~~Me~etf~d~eVa~~ln----~--~FV~VkvD~ee-~pdi~~~y 191 (784)
-+|||.+|.|++..|+- |..+-. +-..+.+.++ . .+|.|.||-+. .|+..+.|
T Consensus 65 l~Gk~~lv~FgyT~CpdVCP~~l~---~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y 125 (207)
T COG1999 65 LKGKPSLVFFGYTHCPDVCPTTLA---ELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKY 125 (207)
T ss_pred cCCCEEEEEeecCCCCccChHHHH---HHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHH
Confidence 47999999999999985 777654 3345555555 1 37788888763 46665655
No 284
>PLN02345 endoglucanase
Probab=65.30 E-value=1.5e+02 Score=34.77 Aligned_cols=118 Identities=11% Similarity=-0.024 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCCcch-------------------HHHHHHHHHHHHHHcC
Q 003940 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLDD-------------------YAFLISGLLDLYEFGS 637 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~--~~~~leD-------------------yA~li~aLL~LYeaTg 637 (784)
+.+++.++=..+||++..- .+|++++...++..+ .+..+|+ -+.++.+|...+.+..
T Consensus 82 ~~~ldelkw~~Dyllk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~~~~~~pgsd~a~~~AAAlA~as~vfk 159 (469)
T PLN02345 82 DSAKDSLKWITDYLINAHP--SENVLYIQVGDPKLDHKCWERPETMDEKRPLTKINTSSPGSEVAAETAAAMAAASLVFK 159 (469)
T ss_pred HHHHHHHhHHHHHHHHhcC--CCCeEEEEecCCCCCcccCCChhhcCCcceEEecCCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 7899999999999988653 357888875544221 1122222 2345556666666655
Q ss_pred C--H----HHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChh--HHHHHHHHHHHHHhCCCCc
Q 003940 638 G--T----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGN--SVSVINLVRLASIVAGSKS 709 (784)
Q Consensus 638 d--~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~N--sv~a~~L~rL~~lt~~~~~ 709 (784)
+ + ++|+.|+++++.+..+ .|.|..+... . .+..+|.. -=++-+-..|+..||+
T Consensus 160 ~~D~~YA~~lL~~Ak~ly~fa~~~-----~g~y~~~~~~-~----------~~~Y~s~~~~DEl~WAAawLy~ATgd--- 220 (469)
T PLN02345 160 SSDSTYSDTLLKHAKQLFNFADKY-----RGSYSESIPE-V----------QDYYNSTGYGDELLWAASWLYHATGD--- 220 (469)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCcccCCCCc-c----------CCCCCCcccccHHHHHHHHHHHHhCC---
Confidence 3 3 4689999999888763 1222211100 0 01112211 1256666789999996
Q ss_pred hHHHHHHH
Q 003940 710 DYYRQNAE 717 (784)
Q Consensus 710 ~~y~e~A~ 717 (784)
..|.+.+.
T Consensus 221 ~~Yl~~~~ 228 (469)
T PLN02345 221 KTYLAYVT 228 (469)
T ss_pred HHHHHHHH
Confidence 78988774
No 285
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=64.54 E-value=3.5 Score=41.50 Aligned_cols=57 Identities=28% Similarity=0.442 Sum_probs=37.0
Q ss_pred HhhcCCcEEEEEcccCC-hhhhhhhhcccCCHHHHHHHhc-----ccEEEEEcCCC-CccHHHHHHH
Q 003940 134 ARKRDVPIFLSIGYSTC-HWCHVMEVESFEDEGVAKLLND-----WFVSIKVDREE-RPDVDKVYMT 193 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC-~wC~~Me~etf~d~eVa~~ln~-----~FV~VkvD~ee-~pdi~~~y~~ 193 (784)
+.-.||+++|.|++..| .-|-.+-.. =.++.+.|.+ ++|.|.+|-+. .|+.-+.|.+
T Consensus 48 ~~~~Gk~~lv~F~yT~CpdvCp~~l~~---l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~~ 111 (174)
T PF02630_consen 48 DDLKGKWVLVFFGYTRCPDVCPTTLAN---LSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYAK 111 (174)
T ss_dssp GGGTTSEEEEEEE-TTSSSHHHHHHHH---HHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHHH
T ss_pred HHhCCCeEEEEEEEcCCCccCHHHHHH---HHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHHH
Confidence 33479999999999999 568766432 2244444443 48888888763 5776666643
No 286
>PLN02266 endoglucanase
Probab=63.45 E-value=2.2e+02 Score=33.94 Aligned_cols=123 Identities=11% Similarity=-0.040 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CCC-------------------cchHHHHHHHHHHHHHHcC
Q 003940 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGF-------------------LDDYAFLISGLLDLYEFGS 637 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~--~~~-------------------leDyA~li~aLL~LYeaTg 637 (784)
+.+++.++=..||+++-... .|++++...++..+. ++. .+--+.++.+|...+.+-.
T Consensus 130 pd~Ldelkw~~D~llk~~~~--~~~vy~qVg~~~~Dh~~W~~Pe~~~~~R~~y~i~~~~pgsd~a~e~AAALAaas~vfk 207 (510)
T PLN02266 130 QNAKDAIRWATDYLLKATAH--PDTIYVQVGDANKDHACWERPEDMDTPRSVFKVDKNTPGSDVAAETAAALAAASLVFR 207 (510)
T ss_pred HHHHHHHHHHHHHHHHhccC--CCeEEEEeCCCCCCcccCCChhhcCCCCeeEEeCCCCCchHHHHHHHHHHHHHHHHhc
Confidence 78999999999999987643 578888765442111 011 1122345556655565554
Q ss_pred --CH----HHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCCh---hHHHHHHHHHHHHHhCCCC
Q 003940 638 --GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSG---NSVSVINLVRLASIVAGSK 708 (784)
Q Consensus 638 --d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~---Nsv~a~~L~rL~~lt~~~~ 708 (784)
|+ +.|+.|+++++.+..+ .|.|....... .. ....|. .-=++-+-..|++.||+
T Consensus 208 ~~D~~yA~~~L~~Ak~ly~fa~~~-----~g~y~~~~~~~-------~~---~~y~s~s~~~DEl~WAAawLy~ATGd-- 270 (510)
T PLN02266 208 KSDPTYSKLLVRRAIRVFQFADKY-----RGAYSNGLKPD-------VC---PFYCSYSGYQDELLWGAAWLHKATKN-- 270 (510)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCCccCCCCcc-------cC---CCcccCCcchHHHHHHHHHHHHHhCC--
Confidence 44 4588888888887652 12221110000 00 001110 11244455688999986
Q ss_pred chHHHHHHHHHHH
Q 003940 709 SDYYRQNAEHSLA 721 (784)
Q Consensus 709 ~~~y~e~A~~~l~ 721 (784)
+.|.+.++....
T Consensus 271 -~~Yl~~~~~~~~ 282 (510)
T PLN02266 271 -PTYLNYIQVNGQ 282 (510)
T ss_pred -HHHHHHHHHHHh
Confidence 789988766443
No 287
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold). The protein prenyltransferase family of lipid-modifying enzymes includes protein farnesyltransferase (FTase) and geranylgeranyltransferase types I and II (GGTase-I and GGTase-II). They catalyze the carboxyl-terminal lipidation of Ras, Rab, and several other cellular signal transduction proteins, facilitating membrane associations and specific protein-protein interactions. Prenyltransferases employ a Zn2+ ion to alkylate a thiol group catalyzing the formation of thioether linkages between the C1 atom of farnesyl (15-carbon by FTase) or geranylgeranyl (20-carbon by GGTase-I, II) isoprenoid lipids and cysteine residues at or near the C-terminus of protein acceptors. FTase and GGTase-I prenylate the cysteine in the terminal sequence, "CAAX"; and GGTase-II prenylates both cysteines in the "CC" (or "CXC") terminal sequence. These enzymes are heterodimeric with both alpha and beta subunits re
Probab=62.57 E-value=93 Score=33.41 Aligned_cols=120 Identities=15% Similarity=0.128 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhhccccCCCCCCCCCC-CChh-HHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCC
Q 003940 282 QNALRLCAEQLSKSYDSRFGGFGSAPKF-PRPV-EIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGG 359 (784)
Q Consensus 282 ~~~l~~~~~~l~~~~D~~~GGfg~aPKF-P~p~-~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~G 359 (784)
....+++++-+.+..+...|||+..|-- |... .+..+.-.... ++. ........++ ..-|... -+-.|
T Consensus 46 ~~~~~~~i~~l~~~q~~~~Ggf~~~~~~~~~~~~T~~al~~l~ll-g~~--~~~~~~~~~~-~~~l~~~------q~~dG 115 (286)
T cd02890 46 DENKDEIIDFIYSCQVNEDGGFGGGPGQDPHLASTYAAVLSLAIL-GDD--ALSRIDREKI-YKFLSSL------QNPDG 115 (286)
T ss_pred hHHHHHHHHHHHHhhcCCCCCCCCCCCCCccHHHHHHHHHHHHHc-Ccc--ccchhhHHHH-HHHHHHh------cCCCC
Confidence 3456777777877773446999997632 2221 22222111111 110 0001112222 2223333 12458
Q ss_pred eEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee
Q 003940 360 GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (784)
Q Consensus 360 GF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfys 425 (784)
||. ++. |...|.-=. ..-+.+..+.+... ....+++++||.+ .+.++|||-.
T Consensus 116 gf~-~~~---~~~~d~~~t--------y~al~~l~ll~~~~-~~~~~~~~~~l~~-~Q~~dGGf~~ 167 (286)
T cd02890 116 SFR-GDL---GGEVDTRFV--------YCALSILSLLNILT-DIDKEKLIDYILS-CQNYDGGFGG 167 (286)
T ss_pred Ccc-cCC---CCCchHHHH--------HHHHHHHHHhCCch-hhhHHHHHHHHHH-hCCCCCCcCC
Confidence 884 443 333333221 11222222333332 4567889999997 5788999843
No 288
>KOG2787 consensus Lanthionine synthetase C-like protein 1 [Defense mechanisms]
Probab=62.46 E-value=72 Score=35.54 Aligned_cols=116 Identities=14% Similarity=0.109 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCC-CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 003940 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP-GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 657 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~-~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~ 657 (784)
+..++.-+...+|+.++-.. +|-+.-+- +++.+.. -+..+--=+|..|...|++.++++||+.|.+..+.++.+=.
T Consensus 241 ~~~~~dVK~sldym~~~rfp--sGNyP~s~-~~~~drLVhWcHGApGv~~~L~kAy~VF~Eekyl~aa~ecadvVW~rGl 317 (403)
T KOG2787|consen 241 PALLKDVKGSLDYMIQNRFP--SGNYPSSE-GNKRDRLVHWCHGAPGVAYTLAKAYQVFKEEKYLEAAMECADVVWKRGL 317 (403)
T ss_pred hhHHHhhhhHHHHHHHccCC--CCCCCccc-CCCcceeeeeccCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhh
Confidence 55778888889998876543 34433221 1111110 00111123577899999999999999999999988766521
Q ss_pred ccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 003940 658 DREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAV 722 (784)
Q Consensus 658 D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~ 722 (784)
=+.+-| .-++ -+||+ -.++.|+++|++ .+|..+|.+..+.
T Consensus 318 Lkkg~G-----------------ichG--vaGNa---YvFLsLyRLT~d---~kYlyRA~kFae~ 357 (403)
T KOG2787|consen 318 LKKGVG-----------------ICHG--VAGNA---YVFLSLYRLTGD---MKYLYRAKKFAEW 357 (403)
T ss_pred hhcCCc-----------------cccc--ccCch---hhhHhHHHHcCc---HHHHHHHHHHHHH
Confidence 111101 1111 35665 356778899986 8899999654443
No 289
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=62.18 E-value=25 Score=39.36 Aligned_cols=94 Identities=10% Similarity=0.026 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCCCCcchHHHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAPGFLDDYAFL 625 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~~~~~~leDyA~l 625 (784)
-.+++||..|++.-++. ...|+..|+.+...++++... .|+..-.. ..|-.......-+-++.
T Consensus 116 l~iA~ALl~A~~~Wg~~--------------~~~y~~~A~~~~~~i~~~~v~--~g~~~llpG~~~f~~~~~~~~npSY~ 179 (342)
T PF01270_consen 116 LDIAYALLLAARRWGDG--------------AYNYLAEALAIINAIKTHEVN--PGRYVLLPGDWGFNSDDYWTTNPSYF 179 (342)
T ss_dssp HHHHHHHHHHHHHHTSS--------------SSHHHHHHHHHHHHHHHHHEE--TTEEEECSSSSSCBTTSEEEEEGGGS
T ss_pred HHHHHHHHHHHhhcCCc--------------chhHHHHHHHHHHHHHhheeC--CCceEEeccccccCCCCceEeChhhc
Confidence 47789999999999852 157999999999998887765 34322211 11111111111122333
Q ss_pred H-HHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 003940 626 I-SGLLDLYEFGSGTKWLVWAIELQNTQDELF 656 (784)
Q Consensus 626 i-~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F 656 (784)
+ -++-.++++++|+.|.+.+....+.+....
T Consensus 180 ~~pa~~~f~~~~~~~~W~~v~~~~~~ll~~~~ 211 (342)
T PF01270_consen 180 MPPAFRAFAAATGDPRWNEVADSSYALLQKAS 211 (342)
T ss_dssp -HHHHHHHHHHHCCTHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHHHHhc
Confidence 4 778899999999999999998888877665
No 290
>PF00759 Glyco_hydro_9: Glycosyl hydrolase family 9; InterPro: IPR001701 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 9 GH9 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family E. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1RQ5_A 1CLC_A 3H7L_B 1K72_B 1G87_B 1GA2_A 1KFG_A 1UT9_A 2YIK_A 3RX5_A ....
Probab=62.16 E-value=1.6e+02 Score=33.70 Aligned_cols=126 Identities=13% Similarity=0.043 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC--------CCC------------CC-CcchHHHHHHHHHHHHHHc
Q 003940 578 RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP--------SKA------------PG-FLDDYAFLISGLLDLYEFG 636 (784)
Q Consensus 578 ~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~--------~~~------------~~-~leDyA~li~aLL~LYeaT 636 (784)
.++.|+.++=.++||++.... .|.|+....+|. +.. .. -.+--+.++.+|...+.+-
T Consensus 93 ~~dllde~kwg~D~llkm~~~--~~~~~~qvgdg~~~h~~w~~~~~~~~~~~~~~~~~~~~~t~~~~~~AAalA~As~v~ 170 (444)
T PF00759_consen 93 IPDLLDEAKWGLDWLLKMQDS--DGTFYAQVGDGGVDHKVWGRPEIMPDDDPSYRYDAPNPGTDATAEFAAALAAASRVF 170 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTBSC--TTEEEEEESTHHHHHTEESTGGGTGSGESEEEEETTB-EHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCC--CCceeeeccCccchhhcccCCCCCCCCCCcceEecCCCchHHHHHHHHHHHHHHHhc
Confidence 389999999999999987644 466776654431 100 11 1122344555666666665
Q ss_pred CC--H----HHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCC--hhHHHHHHHHHHHHHhCCCC
Q 003940 637 SG--T----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS--GNSVSVINLVRLASIVAGSK 708 (784)
Q Consensus 637 gd--~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS--~Nsv~a~~L~rL~~lt~~~~ 708 (784)
.+ + ++|+.|+++++.+.++- |.|+...... ..+..++ -..-++-+-..|++.|++
T Consensus 171 k~~d~~~A~~~L~~A~~~~~~a~~~~-----~~~~~~~~~~----------~~~~Y~~~~~~De~~wAA~~Ly~aTg~-- 233 (444)
T PF00759_consen 171 KDFDPAYAAQCLKAAKEAYAFAKKNP-----GVYSDNPQPN----------GGGFYNSSGYEDELAWAAAELYRATGD-- 233 (444)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHST-----THGGGTSTCT----------TTTTSHCS-SHHHHHHHHHHHHHHHT---
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCC-----CcccCCcccc----------cCCcccCCCcccHHHHHHHHHHHhcCc--
Confidence 54 4 67888888888876642 3333322110 0111222 112356667789999985
Q ss_pred chHHHHHHHHHHHHH
Q 003940 709 SDYYRQNAEHSLAVF 723 (784)
Q Consensus 709 ~~~y~e~A~~~l~~~ 723 (784)
+.|++.+++....+
T Consensus 234 -~~Y~~~a~~~~~~~ 247 (444)
T PF00759_consen 234 -ESYLDYAKEYYDDL 247 (444)
T ss_dssp -HHHHHHHHHHCCTS
T ss_pred -HHHHHHHHHhHHhh
Confidence 78999988766444
No 291
>KOG2430 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=59.99 E-value=46 Score=37.00 Aligned_cols=95 Identities=17% Similarity=0.146 Sum_probs=64.8
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC--CeEEEE----ecCCCCCC
Q 003940 542 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT--HRLQHS----FRNGPSKA 615 (784)
Q Consensus 542 itsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~--G~l~~~----~~dg~~~~ 615 (784)
-|+--|-+|.-++...+.+|+ +-|-+.|+++.+|+++.-....+ |..... |......+
T Consensus 183 ctac~gtlilefaals~~tg~----------------~ifee~arkaldflwekr~rss~l~g~~inihsgdw~rkdsgi 246 (587)
T KOG2430|consen 183 CTACAGTLILEFAALSRFTGA----------------PIFEEKARKALDFLWEKRHRSSDLMGTTINIHSGDWTRKDSGI 246 (587)
T ss_pred hhhccchhhhhHHHHhhccCC----------------hhhHHHHHHHHHHHHHHhcccccccceeEEeccCcceecccCc
Confidence 456667888889999999998 67999999999999876544222 222221 11112334
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 003940 616 PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (784)
Q Consensus 616 ~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~ 655 (784)
.+-.+.| -+=+|..|-..||+.||++-.+-.+.+...
T Consensus 247 gagidsy---yey~lkayillgddsfldrfn~hydai~ry 283 (587)
T KOG2430|consen 247 GAGIDSY---YEYLLKAYILLGDDSFLDRFNKHYDAIKRY 283 (587)
T ss_pred CcchHHH---HHHHHHHhheeccHHHHHHHHHHHHHHHHH
Confidence 4445555 345677888899999999888777776554
No 292
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C ....
Probab=58.61 E-value=34 Score=30.84 Aligned_cols=28 Identities=18% Similarity=0.069 Sum_probs=19.5
Q ss_pred cCChHHHHHHHHHHHHHHHhccCCCCcee
Q 003940 396 TKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (784)
Q Consensus 396 t~d~~y~~~A~~t~~fl~~~m~~~~Ggfy 424 (784)
.+.+...+.++++++||++ ++.++|||-
T Consensus 85 ~~~~~~~~~~~~a~~~l~~-~Q~~dGg~~ 112 (113)
T PF13249_consen 85 LGRPDDEEAVRKAVDWLLS-CQNPDGGWG 112 (113)
T ss_dssp HT-GGCHTTHCCHHHHHHH-TB-TTSSB-
T ss_pred cCCCcccHHHHHHHHHHHH-hcCCCCCCC
Confidence 3333337788999999998 778899983
No 293
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=57.97 E-value=86 Score=38.30 Aligned_cols=100 Identities=14% Similarity=0.205 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHhc---cccCCCeEEEE-----ecCCCCCC-------C---CCcchHHHHHHHHHHHHHHcC---
Q 003940 579 KEYMEVAESAASFIRRHL---YDEQTHRLQHS-----FRNGPSKA-------P---GFLDDYAFLISGLLDLYEFGS--- 637 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l---~d~~~G~l~~~-----~~dg~~~~-------~---~~leDyA~li~aLL~LYeaTg--- 637 (784)
.+....+..+.+++.+.+ .+..+.++.+. |.|+...+ . ...+=+.+++.++..+.+..+
T Consensus 362 ~e~~~~v~~a~d~~~~~~~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~ 441 (641)
T COG3408 362 RELWPSVGAALDWILKGFDFGFDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEE 441 (641)
T ss_pred HHHHHHHHHHHHHHHhcCCccceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhcccc
Confidence 567778888888887766 23333344442 22221110 1 122233447888888888888
Q ss_pred -CHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCcccccccc
Q 003940 638 -GTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKE 680 (784)
Q Consensus 638 -d~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~ 680 (784)
-++|.+.|+++.+.+...||.+ .+||+...+++++..|+..
T Consensus 442 ~~~~~~~~a~~l~~~F~~~fw~~--~~f~dl~~~~~~~~~r~~~ 483 (641)
T COG3408 442 DAARLEKIARRLKESFEAKFWNP--TGFYDLALDDKDVPIRPNF 483 (641)
T ss_pred cHHHHHHHHHHHHHHHHHHhhCc--cchHhhhccCCCcccCccc
Confidence 5678899999999999999975 5688877766555555543
No 294
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=56.51 E-value=40 Score=33.03 Aligned_cols=78 Identities=17% Similarity=0.248 Sum_probs=53.1
Q ss_pred HHHHHHHhhcCCc-EEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCC--CC
Q 003940 128 EEAFAEARKRDVP-IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG--GW 204 (784)
Q Consensus 128 ~eal~~Ak~e~Kp-I~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~--G~ 204 (784)
.+-+...-..++| +++.|.-........+.+. + .++++-....++.+.+|.+..+.+.+.+ |.. .+
T Consensus 84 ~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l--~~~a~~~~~~~~f~~~d~~~~~~~~~~~--------~i~~~~~ 152 (184)
T PF13848_consen 84 PENFEKLFSSPKPPVLILFDNKDNESTEAFKKE-L--QDIAKKFKGKINFVYVDADDFPRLLKYF--------GIDEDDL 152 (184)
T ss_dssp TTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHH-H--HHHHHCTTTTSEEEEEETTTTHHHHHHT--------TTTTSSS
T ss_pred hhhHHHHhcCCCceEEEEEEcCCchhHHHHHHH-H--HHHHHhcCCeEEEEEeehHHhHHHHHHc--------CCCCccC
Confidence 4567777777877 6666655556666655542 2 5677777777899999988666654433 544 89
Q ss_pred CcEEEECCCCce
Q 003940 205 PLSVFLSPDLKP 216 (784)
Q Consensus 205 P~~vfl~pdg~p 216 (784)
|..+++++....
T Consensus 153 P~~vi~~~~~~~ 164 (184)
T PF13848_consen 153 PALVIFDSNKGK 164 (184)
T ss_dssp SEEEEEETTTSE
T ss_pred CEEEEEECCCCc
Confidence 999999976544
No 295
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=56.30 E-value=2.3e+02 Score=33.61 Aligned_cols=94 Identities=20% Similarity=0.240 Sum_probs=55.2
Q ss_pred hhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCC
Q 003940 541 VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAP 616 (784)
Q Consensus 541 iitsWNal~I~---ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~~~~ 616 (784)
|-++-|+++.. .|++.++.+|+... ...|.+.|.+..+.|.+.|||++.|.++... ..+....
T Consensus 305 ipVDLNa~L~~~e~~LA~~a~~lG~~~~------------a~~~~~~A~~~~~aI~~~lWdee~g~~~Dyd~~~~~~~~- 371 (512)
T PF01204_consen 305 IPVDLNAILYRNEKDLAEFAELLGDQEK------------AEEYRQRAEERKEAINQYLWDEEDGFYYDYDLRTGKRSP- 371 (512)
T ss_dssp E-HHHHHHHHHHHHHHHHHHHHTT-HHH------------HHHHHHHHHHHHHHHHHHTEETTTTEE--EETTTTEEGG-
T ss_pred cCchHHHHHHHHHHHHHHHHHHcCchhH------------HHHHHHHHHHHHHHHHHhCccCCCCeEEeeeCCCCCCcc-
Confidence 33456888855 78888889986321 2579999999999999999999888766542 2232211
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 003940 617 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 656 (784)
Q Consensus 617 ~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F 656 (784)
.+.+.+++=|+--.-++ +.|..+...+...+
T Consensus 372 ------~~~~a~f~PL~ag~a~~---~qa~~~~~~~l~~~ 402 (512)
T PF01204_consen 372 ------VFSPANFLPLWAGIASP---EQAERLVARALDYL 402 (512)
T ss_dssp --------BGGGGHHHHTT-S-H---HHHHHHHHHHHHHC
T ss_pred ------cccHHHHHHHHHhhcCH---hhhhhHHHHHHHHH
Confidence 23344555555433333 23555555555554
No 296
>PLN00119 endoglucanase
Probab=56.14 E-value=3.8e+02 Score=31.80 Aligned_cols=119 Identities=11% Similarity=0.009 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CCCcc------------------hH-HHHHHHHHHHHHHcC
Q 003940 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGFLD------------------DY-AFLISGLLDLYEFGS 637 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~--~~~le------------------Dy-A~li~aLL~LYeaTg 637 (784)
+.+++.++-..+|+++..- ..+.|++...+|..+. +..+| |- +.++.+|...+.+-.
T Consensus 117 ~~~lde~kw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~~~AAAlA~as~vfk 194 (489)
T PLN00119 117 GNALAALKWATDYLIKAHP--QPNVLYGQVGDGNSDHACWMRPEDMTTPRTSYRIDAQHPGSDLAGETAAAMAAASIAFA 194 (489)
T ss_pred HHHHHHHHHHHHHHHHhcC--CCCeEEEEeccCCCcccccCChhhCCCcCceeecCCCCCchHHHHHHHHHHHHHHHHcc
Confidence 6799999999999998763 3567777655442211 11111 22 345555555555555
Q ss_pred --CHH----HHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChh--HHHHHHHHHHHHHhCCCCc
Q 003940 638 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGN--SVSVINLVRLASIVAGSKS 709 (784)
Q Consensus 638 --d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~N--sv~a~~L~rL~~lt~~~~~ 709 (784)
|+. .|+.|+++++++..+ .|. |...... ..+..+|.+ --++-+-..|++.||+
T Consensus 195 ~~D~~yA~~lL~~Ak~~y~fA~~~-----~g~-y~~~~~~----------~~g~Y~ss~~~DEl~WAAawLY~aTgd--- 255 (489)
T PLN00119 195 PSDPAYASILIGHAKDLFEFAKAH-----PGL-YQNSIPN----------AGGFYASSGYEDELLWAAAWLHRATND--- 255 (489)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC-----CCc-ccCCCCC----------CCCCCCCCchhhHHHHHHHHHHHHhCC---
Confidence 444 588888888888663 121 1111000 001111211 1255566688999986
Q ss_pred hHHHHHHHH
Q 003940 710 DYYRQNAEH 718 (784)
Q Consensus 710 ~~y~e~A~~ 718 (784)
..|.+.+..
T Consensus 256 ~~Yl~~~~~ 264 (489)
T PLN00119 256 QTYLDYLTQ 264 (489)
T ss_pred HHHHHHHHh
Confidence 788887653
No 297
>PRK11097 endo-1,4-D-glucanase; Provisional
Probab=56.02 E-value=90 Score=35.63 Aligned_cols=104 Identities=15% Similarity=0.061 Sum_probs=67.1
Q ss_pred CCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCC-eEEEEe-cCCCCC
Q 003940 537 LDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTH-RLQHSF-RNGPSK 614 (784)
Q Consensus 537 lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G-~l~~~~-~dg~~~ 614 (784)
.|..-=|+---.+.+||++|++.-++ +.|++.|..++..|.++...+..| +..-.. ..|-..
T Consensus 109 ~D~NsASDGDl~IA~ALl~A~~~W~~----------------~~Y~~~A~~ll~~I~~~ev~~~~g~g~~LlPG~~gF~~ 172 (376)
T PRK11097 109 LDANSASDADLWIAYSLLEAGRLWKE----------------PRYTALGTALLKRIAREEVVTVPGLGSMLLPGPVGFAD 172 (376)
T ss_pred CCCCCCChHHHHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHhcccccCCCceeeccccccccC
Confidence 34444455556789999999999987 789999999999999887664444 221111 111000
Q ss_pred CCCC-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 003940 615 APGF-LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF 656 (784)
Q Consensus 615 ~~~~-leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F 656 (784)
.... ++.-=++...+-.+++++++..|.+.+....+.+.+.-
T Consensus 173 ~~~~~~NPSY~~p~~~~~fa~~~~~~~W~~l~~~~~~lL~~~a 215 (376)
T PRK11097 173 DGSWRLNPSYLPPQLLRRFARFLPGGPWAALAATNARLLLETA 215 (376)
T ss_pred CCCCeECcccccHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 0111 12112344455556788999999999988888877643
No 298
>PLN02171 endoglucanase
Probab=55.40 E-value=4.5e+02 Score=32.21 Aligned_cols=121 Identities=11% Similarity=0.056 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CCCcc------------------h-HHHHHHHHHHHHHHcC
Q 003940 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGFLD------------------D-YAFLISGLLDLYEFGS 637 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~--~~~le------------------D-yA~li~aLL~LYeaTg 637 (784)
+.+|+.++=..||+++..- +.+.+++...+|..+. +..+| | -+.++.+|...+.+..
T Consensus 116 ~~~Ldeikw~~Dyllk~~~--~~~~~y~qVgdg~~DH~~W~~Pe~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaaS~vfk 193 (629)
T PLN02171 116 GHAMDAVKWGTDYFIKAHP--EPNVLYGEVGDGDTDHYCWQRPEDMTTDRQAYRIDPQNPGSDLAGETAAAMAAASIVFR 193 (629)
T ss_pred HHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCccccCcCChhHccccceeEEecCCCCchHHHHHHHHHHHHHHHhcc
Confidence 6799999999999998763 3577887655543211 11122 1 2345555555555554
Q ss_pred --CHH----HHHHHHHHHHHHHHh--cccc---CCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCC
Q 003940 638 --GTK----WLVWAIELQNTQDEL--FLDR---EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (784)
Q Consensus 638 --d~~----yL~~A~~L~~~~~~~--F~D~---~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~ 706 (784)
|+. .|+.|+++++++..+ .++. ...+||.... . -+-=++-+-..|++.||+
T Consensus 194 ~~D~~YA~~lL~~Ak~ly~fA~~~~g~y~~~~~~~~~~Y~s~s-----------~-------y~DEl~WAAawLy~ATgd 255 (629)
T PLN02171 194 RSNPGYANELLTHAKQLFDFADKYRGKYDSSITVAQKYYRSVS-----------G-------YGDELLWAAAWLYQATNN 255 (629)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhCCCcccCCCcccCCccCCCC-----------C-------ccHHHHHHHHHHHHHhCC
Confidence 444 588888888888663 1110 0112222100 0 012355566689999996
Q ss_pred CCchHHHHHHHHHHHH
Q 003940 707 SKSDYYRQNAEHSLAV 722 (784)
Q Consensus 707 ~~~~~y~e~A~~~l~~ 722 (784)
+.|.+.+.+....
T Consensus 256 ---~~Yl~~~~~~~~~ 268 (629)
T PLN02171 256 ---QYYLDYLGNNGDA 268 (629)
T ss_pred ---HHHHHHHHHHHHh
Confidence 7899887665443
No 299
>PRK13271 treA trehalase; Provisional
Probab=54.82 E-value=3.4e+02 Score=32.86 Aligned_cols=102 Identities=21% Similarity=0.256 Sum_probs=65.2
Q ss_pred hhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCC
Q 003940 541 VIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAP 616 (784)
Q Consensus 541 iitsWNal~I~---ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~~~~ 616 (784)
+-+.-|++++. .|++.++.+|+.. ...+|.+.|.+..+.|.+.|||++.|.++... ++++.
T Consensus 337 iPVDLNALLy~ae~~LA~la~~lGd~~------------~A~~y~~~A~~rr~AI~~~LWnee~G~f~DYDl~~~~~--- 401 (569)
T PRK13271 337 VPVDLNALMFKMEKILARASKAAGDNA------------MANQYETLANARQKAIEKYLWNDKEGWYADYDLKSHKV--- 401 (569)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhCChh------------hHHHHHHHHHHHHHHHHHhcccCCCCEEEEEECCCCCE---
Confidence 33456888866 5666677777621 12468999999999999999998777665432 22221
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccc
Q 003940 617 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFN 666 (784)
Q Consensus 617 ~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~ 666 (784)
-+ .+.+.+++-|+-=.-+ .+.|..+.+.+..++..+ ||.-.
T Consensus 402 ---r~-~~saa~f~PLwag~a~---~~qA~~Vv~~l~~~Ll~p--gGLpT 442 (569)
T PRK13271 402 ---RN-QLTAAALFPLYVNAAA---KDRANKVAAATKTHLLQP--GGLNT 442 (569)
T ss_pred ---ee-chhHHHHHhhhcCCCC---HHHHHHHHHHHHHhcCCC--CCccC
Confidence 12 3566777777642223 257777887777777653 55433
No 300
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M). This group also contains the pregnancy zone protein (PZP). Alpha(2)-M and PZP are broadly specific proteinase inhibitors. Alpha (2)-M is a major carrier protein in serum. The structural thioester of alpha (2)-M, is involved in the immobilization and entrapment of proteases. PZP is a trace protein in the plasma of non-pregnant females and males which is elevated in pregnancy. Alpha (2)-M and PZ bind to placental protein-14 and may modulate its activity in T-cell growth and cytokine production contributing to fetal survival. It has been suggested that thioester bond cleavage promotes the binding of PZ and alpha (2)-M to the CD91 receptor clearing them from circulation.
Probab=54.54 E-value=44 Score=36.14 Aligned_cols=77 Identities=9% Similarity=0.072 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 003940 336 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 415 (784)
Q Consensus 336 ~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~ 415 (784)
++.+.+..-...+.. +-+-+|||-- |...+-+--.+..|..+.++.+|..... ....+.+++++||.+
T Consensus 46 ~~~~~l~~g~~~~~~---~q~~dGsf~~------w~~~~~~~~~wlTa~v~~~L~~a~~~~~--v~~~~i~ra~~wL~~- 113 (292)
T cd02897 46 KALGFLRTGYQRQLT---YKHSDGSYSA------FGESDKSGSTWLTAFVLKSFAQARPFIY--IDENVLQQALTWLSS- 113 (292)
T ss_pred HHHHHHHHHHHHHHh---ccCCCCCeec------ccCCCCCcchhhHHHHHHHHHHHhccCC--CCHHHHHHHHHHHHH-
Confidence 444455444444443 4456799843 3211124466789999999999874322 335788999999996
Q ss_pred ccCCCCcee
Q 003940 416 MIGPGGEIF 424 (784)
Q Consensus 416 m~~~~Ggfy 424 (784)
++.++|||.
T Consensus 114 ~Q~~dG~f~ 122 (292)
T cd02897 114 HQKSNGCFR 122 (292)
T ss_pred hcCCCCCCC
Confidence 578899985
No 301
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=54.53 E-value=23 Score=30.92 Aligned_cols=55 Identities=20% Similarity=0.247 Sum_probs=38.9
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHH-hcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~l-n~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~ 211 (784)
++.++.+.||-|..++. .+.++. +..|....||+++.|.+...| + .-.|...+-+
T Consensus 2 l~l~~k~~C~LC~~a~~------~L~~~~~~~~~~l~~vDI~~d~~l~~~Y--------~-~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKE------ILEEVAAEFPFELEEVDIDEDPELFEKY--------G-YRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHH------HHHHCCTTSTCEEEEEETTTTHHHHHHS--------C-TSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHH------HHHHHHhhcCceEEEEECCCCHHHHHHh--------c-CCCCEEEEcC
Confidence 46789999999999874 333332 345889999999888877766 3 3579866544
No 302
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=52.18 E-value=51 Score=27.43 Aligned_cols=60 Identities=13% Similarity=0.097 Sum_probs=37.2
Q ss_pred EEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 144 ~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
-+++.+|++|++.. -+.+..+-.|-.+.||....+ ..|. ..+..+..|+.+ +.||..++.
T Consensus 3 ly~~~~~p~~~rv~-------~~L~~~gl~~e~~~v~~~~~~---~~~~----~~np~~~vP~L~--~~~g~~l~e 62 (71)
T cd03060 3 LYSFRRCPYAMRAR-------MALLLAGITVELREVELKNKP---AEML----AASPKGTVPVLV--LGNGTVIEE 62 (71)
T ss_pred EEecCCCcHHHHHH-------HHHHHcCCCcEEEEeCCCCCC---HHHH----HHCCCCCCCEEE--ECCCcEEec
Confidence 46789999999864 233333445777788775433 2232 234678899885 346776654
No 303
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=51.73 E-value=43 Score=27.50 Aligned_cols=63 Identities=11% Similarity=-0.020 Sum_probs=35.7
Q ss_pred EEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 144 ~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
-++.++|++|+++.- +.+..+-.|-.+.+|..+.......|. .+...+.+|+.+. ++|..+..
T Consensus 3 Ly~~~~s~~~~~~~~-------~L~~~~l~~~~~~v~~~~~~~~~~~~~----~~~p~~~vP~l~~--~~~~~l~e 65 (74)
T cd03051 3 LYDSPTAPNPRRVRI-------FLAEKGIDVPLVTVDLAAGEQRSPEFL----AKNPAGTVPVLEL--DDGTVITE 65 (74)
T ss_pred EEeCCCCcchHHHHH-------HHHHcCCCceEEEeecccCccCCHHHH----hhCCCCCCCEEEe--CCCCEEec
Confidence 467789999998752 233334456666776543211112232 2346778898864 45666553
No 304
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=51.70 E-value=64 Score=27.24 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=37.6
Q ss_pred EcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 145 IGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 145 ~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+++.+|+||++.. -+.+..+=.|-.+.|+..+.+ ..+ ....+.+-+|+.+ .||..++.
T Consensus 2 y~~~~Sp~~~kv~-------~~l~~~~i~~~~~~v~~~~~~---~~~----~~~~p~~~vPvL~---~~g~~l~d 59 (75)
T PF13417_consen 2 YGFPGSPYSQKVR-------LALEEKGIPYELVPVDPEEKR---PEF----LKLNPKGKVPVLV---DDGEVLTD 59 (75)
T ss_dssp EEETTSHHHHHHH-------HHHHHHTEEEEEEEEBTTSTS---HHH----HHHSTTSBSSEEE---ETTEEEES
T ss_pred CCcCCChHHHHHH-------HHHHHcCCeEEEeccCcccch---hHH----HhhcccccceEEE---ECCEEEeC
Confidence 5789999999986 234444445777778766542 222 1234677889886 44777765
No 305
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=50.52 E-value=29 Score=29.24 Aligned_cols=62 Identities=16% Similarity=0.211 Sum_probs=35.6
Q ss_pred EEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC-CCceeccc
Q 003940 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP-DLKPLMGG 220 (784)
Q Consensus 143 l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~p-dg~pi~~~ 220 (784)
.-+++..|++|++... +....+=.|-.+.+|....+++ ...+.+..|+.+.-+. +|++++.+
T Consensus 3 ~Ly~~~~~p~c~kv~~-------~L~~~gi~y~~~~~~~~~~~~~---------~~~~~~~vP~l~~~~~~~~~~l~eS 65 (77)
T cd03040 3 TLYQYKTCPFCCKVRA-------FLDYHGIPYEVVEVNPVSRKEI---------KWSSYKKVPILRVESGGDGQQLVDS 65 (77)
T ss_pred EEEEcCCCHHHHHHHH-------HHHHCCCceEEEECCchhHHHH---------HHhCCCccCEEEECCCCCccEEEcH
Confidence 3577899999999762 3333333465555554322221 1246778998875422 46776653
No 306
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=50.31 E-value=1.3e+02 Score=34.49 Aligned_cols=144 Identities=22% Similarity=0.307 Sum_probs=73.5
Q ss_pred hHHHH-----HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec------CCCC
Q 003940 545 WNGLV-----ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR------NGPS 613 (784)
Q Consensus 545 WNal~-----I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~------dg~~ 613 (784)
|..-| |+-|++||..++| +.||..|.++..--+ +.. ++||..-.+- +.-|
T Consensus 418 W~SAMaQGhaISvL~RAy~h~~D----------------e~yL~sAa~al~pyk--~~S-~dgGV~a~Fm~K~~WYEEYP 478 (594)
T KOG3760|consen 418 WHSAMAQGHAISVLTRAYKHFND----------------EKYLKSAAKALKPYK--INS-SDGGVRAEFMGKNIWYEEYP 478 (594)
T ss_pred hHhhhhcccchHHHHHHHHhcCc----------------HHHHHHHHhhcCCeE--eec-CCCceEEEEccccchhhhcC
Confidence 76655 9999999999998 789988877653221 222 2344443332 2222
Q ss_pred CCC--CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HHHhccccCCCcccccC----CCCCcccccccc
Q 003940 614 KAP--GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNT-------QDELFLDREGGGYFNTT----GEDPSVLLRVKE 680 (784)
Q Consensus 614 ~~~--~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~-------~~~~F~D~~~Ggyf~t~----~~~~~l~~R~k~ 680 (784)
..+ =.++++.+-+.||.+|=+ |-..+--+.|.+|... +.. .||..+|.-|+-. +-+|.+ .| ++
T Consensus 479 TTP~SfVLNGF~YSLiGLYDL~e-Ta~~Kia~EA~~Ly~~Gm~SLK~mLp-LyDTGSGTiYDLRH~~LG~APNL-AR-WD 554 (594)
T KOG3760|consen 479 TTPGSFVLNGFLYSLIGLYDLDE-TARAKIAQEAQELYSAGMRSLKQMLP-LYDTGSGTIYDLRHVALGTAPNL-AR-WD 554 (594)
T ss_pred CCCcceeehhHHHHhhhhhccch-hhhHHHHHHHHHHHHHHHHHHHhhhe-eeecCCCceeehhhhhhccCccc-cc-ch
Confidence 222 234455444444444422 1122223445555432 322 4577777666532 111211 12 11
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 003940 681 DHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAV 722 (784)
Q Consensus 681 ~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~ 722 (784)
=-++.+..|.-|+.+-. ++-+.+.|++-...
T Consensus 555 --------YHatHvnqL~llatId~---dpv~~~ta~RWkgY 585 (594)
T KOG3760|consen 555 --------YHATHVNQLKLLATIDK---DPVLSKTADRWKGY 585 (594)
T ss_pred --------hhhHHHHHHHHHhhccc---cHHHHHHHHHHHhh
Confidence 12455666777777654 36666666655444
No 307
>PRK13270 treF trehalase; Provisional
Probab=50.29 E-value=4.6e+02 Score=31.58 Aligned_cols=126 Identities=16% Similarity=0.192 Sum_probs=76.0
Q ss_pred chHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCCCCc
Q 003940 544 SWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPGFL 619 (784)
Q Consensus 544 sWNal~I~---ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~~~~~~l 619 (784)
+-|++++. .|++.++.+|+.. ...+|.+.|.+..+.|.+.|||++.|.++.- .+.++ .
T Consensus 350 DLNaiL~~~e~~LA~~a~~lG~~~------------~a~~~~~~A~~r~~AI~~~LWnee~G~~~DYD~~~~~------~ 411 (549)
T PRK13270 350 DLNAFLYKLESAIANISALKGEKE------------TEALFRQKASARRDAVNRYLWDDENGIYRDYDWRREQ------L 411 (549)
T ss_pred hHHHHHHHHHHHHHHHHHHhCChH------------HHHHHHHHHHHHHHHHHHhccCcccCeEEecccccCc------c
Confidence 56788765 6677777777621 1256889999999999999999887766543 22222 1
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCC--CCChhHHHHHHH
Q 003940 620 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGA--EPSGNSVSVINL 697 (784)
Q Consensus 620 eDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a--~PS~Nsv~a~~L 697 (784)
+ .+.+.+++=|+-=.-++ +.|..+.+.+..+|.. .||.--+.. ....--|+. =|-.+-+++..|
T Consensus 412 -~-~~s~a~f~PLwaG~a~~---~qa~~l~~~l~~~ll~--pGGl~tS~~-------~sgqQWD~PN~WaPlqwmiieGL 477 (549)
T PRK13270 412 -A-LFSAAAIVPLYVGMANH---EQADRLANAVRSRLLT--PGGILASEY-------ETGEQWDKPNGWAPLQWMAIQGF 477 (549)
T ss_pred -c-cccHHHHHHHHhCCCCH---HHHHHHHHHHHHhccc--CCCcCCCCC-------CCcccCCCCCCCccHHHHHHHHH
Confidence 2 25677888887543343 4577777777666653 344333211 111222332 244455677777
Q ss_pred HHHH
Q 003940 698 VRLA 701 (784)
Q Consensus 698 ~rL~ 701 (784)
.+.+
T Consensus 478 ~ryG 481 (549)
T PRK13270 478 KMYG 481 (549)
T ss_pred HHcC
Confidence 7654
No 308
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=49.72 E-value=11 Score=37.08 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=20.9
Q ss_pred cCCcEEEEEcccCChhhhhhhhcc
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVES 160 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~et 160 (784)
++++.++.|+-..|+||+.|++++
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~ 37 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPIL 37 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHH
Confidence 578889999999999999999643
No 309
>TIGR00162 conserved hypothetical protein TIGR00162. This ortholog set includes MJ1210 from Methanococcus jannaschii and AF0525 from Archaeoglobus fulgidus, but not MJ0106 or AF1251.
Probab=49.67 E-value=3e+02 Score=28.28 Aligned_cols=140 Identities=8% Similarity=0.053 Sum_probs=91.6
Q ss_pred ChhhhcccCC-Ccc---cccchHHHHHHHhhcCCcEEEEEccc--CChhhhhhhhccc---CCHHHHHHHhcccEEEEEc
Q 003940 110 SPYLLQHAHN-PVD---WFAWGEEAFAEARKRDVPIFLSIGYS--TCHWCHVMEVESF---EDEGVAKLLNDWFVSIKVD 180 (784)
Q Consensus 110 SpYL~qha~~-~v~---W~~~~~eal~~Ak~e~KpI~l~~~~~--wC~wC~~Me~etf---~d~eVa~~ln~~FV~VkvD 180 (784)
.+.|....+. |+. |+...++-+..|++-+---+|.+++- -|+-=+ ..+| +++++.+.++...+.+++.
T Consensus 15 ~~illl~g~e~~~~p~~~~e~a~~vld~a~~~gv~~iitLgG~~~~~~~tr---p~V~~~at~~el~~~l~~~g~~~~~~ 91 (188)
T TIGR00162 15 TDLIILVGNTQSLSPEGQYELVNAIIDVAKKYGARMIYTLGGYGVGKLVEE---PYVYGAATSPELVEELKEHGVKFREP 91 (188)
T ss_pred CCEEEEEcCCCCCChhhHHHHHHHHHHHHHHcCCCEEEEecCCcCCCCCCC---CceEEEeCCHHHHHHHHhcCCeeecC
Confidence 4677777777 677 98999999999999998888888762 222211 1132 5889999998766655544
Q ss_pred CCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHHHHh--hchHHHHHHHHH
Q 003940 181 REERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD--KKRDMLAQSGAF 258 (784)
Q Consensus 181 ~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~~~~--~~~~~l~~~a~~ 258 (784)
..----+.-.....+ ...|.|...++-.- ..|+|- ...=..+|+.+.+... =+-+.|++.|++
T Consensus 92 ~g~i~G~~glLl~~a----~~~gi~ai~L~~e~------p~y~pD-----P~AA~alL~~L~kllgl~vd~~~L~e~Ae~ 156 (188)
T TIGR00162 92 GGGIIGASGLLLGVS----ELEGIPGACLMGET------PGYMID-----PKAAKAVLEVLCKMLSLEVSVEALEERAKE 156 (188)
T ss_pred CCccccHHHHHHHHH----HHCCCCeEEEEEeC------CCCCCC-----hHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 321112333333333 45699999887432 235542 2356677777777764 478899999999
Q ss_pred HHHHHHHHh
Q 003940 259 AIEQLSEAL 267 (784)
Q Consensus 259 ~~~~l~~~~ 267 (784)
+.+.+++..
T Consensus 157 ie~~~~~~~ 165 (188)
T TIGR00162 157 MEKIIAKIK 165 (188)
T ss_pred HHHHHHHHH
Confidence 988887654
No 310
>PRK13271 treA trehalase; Provisional
Probab=49.27 E-value=47 Score=39.88 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=36.1
Q ss_pred HHHHHHH---HHHHHHHcCCH----HHHHHHHHHHHHHHHhccccCCCcccccC
Q 003940 622 YAFLISG---LLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 668 (784)
Q Consensus 622 yA~li~a---LL~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (784)
+|+++.+ |.++++..|+. .|.++|+++.+.+.+.|||++.|.||+..
T Consensus 342 NALLy~ae~~LA~la~~lGd~~~A~~y~~~A~~rr~AI~~~LWnee~G~f~DYD 395 (569)
T PRK13271 342 NALMFKMEKILARASKAAGDNAMANQYETLANARQKAIEKYLWNDKEGWYADYD 395 (569)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhcccCCCCEEEEEE
Confidence 4444443 44556777776 68899999999999999999989888865
No 311
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=48.64 E-value=70 Score=36.24 Aligned_cols=106 Identities=13% Similarity=0.141 Sum_probs=48.1
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec--CCCCCCC--CCc
Q 003940 544 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR--NGPSKAP--GFL 619 (784)
Q Consensus 544 sWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~--dg~~~~~--~~l 619 (784)
+-|...|-.+.+.++.+||.. | .++....++++.++++. +|+++-++..... |..-+.. .-.
T Consensus 99 D~~~~fVL~vyr~~~~TGD~~----f--------L~~~wp~v~~a~~~~~~--~D~d~dGl~e~~g~~D~TyD~~~~~G~ 164 (365)
T PF04685_consen 99 DLNPKFVLQVYRDYKWTGDRD----F--------LKEMWPAVKKAMDYLLS--WDRDGDGLPENPGHPDQTYDDWSMYGP 164 (365)
T ss_dssp ------------------------------------EHHHHHHHHHHHHHH--SB--TTS-BEEET---SSSTT-EEEEE
T ss_pred cccccccccccccccccccch----h--------hhhHHHHHHHHHHHHHh--hCCCCCCCCCCCCCCccccccCCeeCC
Confidence 446888999999999999821 1 14455788999999987 5654444443321 1111111 001
Q ss_pred chH-----HHHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHhccccCCCcccc
Q 003940 620 DDY-----AFLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFN 666 (784)
Q Consensus 620 eDy-----A~li~aLL~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~ 666 (784)
+-| ..++.++.++.++-|++ +|.+.+++..+.+.+.+|+ |.||.
T Consensus 165 say~~~L~laAL~A~~emA~~lgd~~~a~~y~~~~~~~~~~~~~~LWn---Geyy~ 217 (365)
T PF04685_consen 165 SAYCGGLWLAALRAAAEMAKILGDPELAAKYRELAEKAKKAFNKKLWN---GEYYR 217 (365)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHSEE---TTEE-
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhC---Hhhee
Confidence 222 34566778888888985 5778888888888888996 66776
No 312
>PTZ00062 glutaredoxin; Provisional
Probab=47.39 E-value=71 Score=33.31 Aligned_cols=71 Identities=10% Similarity=0.185 Sum_probs=35.7
Q ss_pred HHHHhhcCCcEEEEEc----ccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 131 FAEARKRDVPIFLSIG----YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 131 l~~Ak~e~KpI~l~~~----~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
+++.-+ .+||+|..- .++|++|+.+.. .|++ .+-.|. .+|.++++++.+... .++|...+|.
T Consensus 106 v~~li~-~~~Vvvf~Kg~~~~p~C~~C~~~k~-~L~~------~~i~y~--~~DI~~d~~~~~~l~----~~sg~~TvPq 171 (204)
T PTZ00062 106 IERLIR-NHKILLFMKGSKTFPFCRFSNAVVN-MLNS------SGVKYE--TYNIFEDPDLREELK----VYSNWPTYPQ 171 (204)
T ss_pred HHHHHh-cCCEEEEEccCCCCCCChhHHHHHH-HHHH------cCCCEE--EEEcCCCHHHHHHHH----HHhCCCCCCe
Confidence 444334 456666554 268999998642 3321 122343 457766666644332 2334444454
Q ss_pred EEEECCCCceec
Q 003940 207 SVFLSPDLKPLM 218 (784)
Q Consensus 207 ~vfl~pdg~pi~ 218 (784)
||++ |+.|.
T Consensus 172 -VfI~--G~~IG 180 (204)
T PTZ00062 172 -LYVN--GELIG 180 (204)
T ss_pred -EEEC--CEEEc
Confidence 3444 55553
No 313
>PF01270 Glyco_hydro_8: Glycosyl hydrolases family 8; InterPro: IPR002037 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 8 GH8 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); lichenase (3.2.1.73 from EC); chitosanase (3.2.1.132 from EC). These enzymes were formerly known as cellulase family D []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1IS9_A 1CEM_A 1KWF_A 1V5D_B 1V5C_A 1WU4_A 2DRS_A 1WU6_A 2DRO_A 1WU5_A ....
Probab=45.84 E-value=2.3e+02 Score=31.74 Aligned_cols=131 Identities=13% Similarity=0.075 Sum_probs=80.2
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCCCCC-C---CCCcchHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHhcccc
Q 003940 586 ESAASFIRRHLYDEQTHRLQHSFRNGPSK-A---PGFLDDYAFLISGLLDLYEFGS--GTKWLVWAIELQNTQDELFLDR 659 (784)
Q Consensus 586 ~~~a~~l~~~l~d~~~G~l~~~~~dg~~~-~---~~~leDyA~li~aLL~LYeaTg--d~~yL~~A~~L~~~~~~~F~D~ 659 (784)
.++..|.++++..+++|.+-|.+..+... . ..=.++=-..+.||+...+..| ...|+..|+.+...+..+-..
T Consensus 75 d~l~~wt~~~l~~~~~~L~aW~~~~~~~~~~~~~nsAtDgDl~iA~ALl~A~~~Wg~~~~~y~~~A~~~~~~i~~~~v~- 153 (342)
T PF01270_consen 75 DRLWNWTKANLSRRNDGLMAWRWGPDGNSQVGDPNSATDGDLDIAYALLLAARRWGDGAYNYLAEALAIINAIKTHEVN- 153 (342)
T ss_dssp HHHHHHHHHHCBTTTTSSBESEEETTSTSSCEECSEBHHHHHHHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHHHHEE-
T ss_pred HHHHHHHHHHhccCCCCCeeEEECCCCCCCCCCCCCCChHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHhheeC-
Confidence 45778888998855567777666443221 1 1224445688999999999999 558899999999998777654
Q ss_pred CCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 003940 660 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 727 (784)
Q Consensus 660 ~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l 727 (784)
.|.....+++-.- ..+..-...||= .+.-.+.+++.++++ ..|.+.++..++.+....
T Consensus 154 -~g~~~llpG~~~f----~~~~~~~~npSY--~~~pa~~~f~~~~~~---~~W~~v~~~~~~ll~~~~ 211 (342)
T PF01270_consen 154 -PGRYVLLPGDWGF----NSDDYWTTNPSY--FMPPAFRAFAAATGD---PRWNEVADSSYALLQKAS 211 (342)
T ss_dssp -TTEEEECSSSSSC----BTTSEEEEEGGG--S-HHHHHHHHHHHCC---THHHHHHHHHHHHHHHHH
T ss_pred -CCceEEecccccc----CCCCceEeChhh--ccHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHhc
Confidence 3433332221100 000000001222 244567788999885 679998888887665443
No 314
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=45.60 E-value=26 Score=33.66 Aligned_cols=35 Identities=11% Similarity=0.050 Sum_probs=25.1
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND 172 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~ 172 (784)
...+++++.|.-..|++|..|+.... +-+.+++++
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~--~~~~~~i~~ 44 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELE--KLLKKYIDP 44 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHH--HHHHHHTTT
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHh--hhhhhccCC
Confidence 34577888899999999999987665 555555443
No 315
>PLN03009 cellulase
Probab=45.19 E-value=6e+02 Score=30.21 Aligned_cols=124 Identities=11% Similarity=0.014 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CCCcc------------------h-HHHHHHHHHHHHHHc
Q 003940 578 RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGFLD------------------D-YAFLISGLLDLYEFG 636 (784)
Q Consensus 578 ~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~--~~~le------------------D-yA~li~aLL~LYeaT 636 (784)
.+.+|+.++=..|||++...+ .|++++...++..+. +..+| | -+.++.+|...+.+.
T Consensus 112 ~~diLdeikw~~D~llkm~~~--~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~is~~~p~sd~a~~~AAalA~as~vf 189 (495)
T PLN03009 112 LRNSLVAIRWATDYLLKTVSQ--PNRIFVQVGDPIADHNCWERPEDMDTPRTVYAVNAPNPASDVAGETAAALAASSMAF 189 (495)
T ss_pred cHHHHHHHHHHHHHHHHcccC--cCeEEEEeCCCCCCcccCcChhhcCCCCeEEEecCCCCccHHHHHHHHHHHHHHHhc
Confidence 478999999999999986543 578888765432110 01111 1 245666666666665
Q ss_pred C--CHHH----HHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCCh---hHHHHHHHHHHHHHhCCC
Q 003940 637 S--GTKW----LVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSG---NSVSVINLVRLASIVAGS 707 (784)
Q Consensus 637 g--d~~y----L~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~---Nsv~a~~L~rL~~lt~~~ 707 (784)
. |+.| |+.|+++++.+... .|.|-.... . . ...-.-.+|. +-=++-+-..|+..||+
T Consensus 190 k~~D~~YA~~ll~~Ak~ly~~a~~~-----~g~y~~~~~----~-~---~g~~~~Y~~~s~~~DE~~WAAawLy~aTgd- 255 (495)
T PLN03009 190 RSSDPGYSETLLRNAIKTFQFADMY-----RGAYSDNDD----I-K---DGVCPFYCDFDGYQDELLWGAAWLRRASGD- 255 (495)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHc-----CCCccCCcc----c-c---CccccCcCCcccccHHHHHHHHHHHHHhCC-
Confidence 4 5554 78888888887652 344422110 0 0 0000112332 23466677788999986
Q ss_pred CchHHHHHHHHH
Q 003940 708 KSDYYRQNAEHS 719 (784)
Q Consensus 708 ~~~~y~e~A~~~ 719 (784)
..|.+.++..
T Consensus 256 --~~Yl~~~~~~ 265 (495)
T PLN03009 256 --DSYLNYIENN 265 (495)
T ss_pred --HHHHHHHHHh
Confidence 7898887643
No 316
>TIGR01535 glucan_glucosid glucan 1,4-alpha-glucosidase. Glucan 1,4-alpha-glucosidase catalyzes the hydrolysis of terminal 1,4-linked alpha-D-glucose residues from non-reducing ends of polysaccharides, releasing a beta-D-glucose monomer. Some forms of this enzyme can hydrolyze terminal 1,6- and 1,3-alpha-D-glucosidic bonds in polysaccharides as well.
Probab=45.17 E-value=6.8e+02 Score=30.83 Aligned_cols=95 Identities=20% Similarity=0.142 Sum_probs=61.6
Q ss_pred CCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC
Q 003940 536 HLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA 615 (784)
Q Consensus 536 ~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~ 615 (784)
.+|.. |+.|.++...++. +. ..+...-+++++||.++--.|+ -+++. -+.|.
T Consensus 349 QlD~~------g~~i~~~~~l~~~-~~----------------~~~~~~vk~aadfl~~~~p~p~-~d~WE-er~g~--- 400 (648)
T TIGR01535 349 QLDET------AFPILLAYRLHRY-DH----------------AFYDKMLKPAADFIVKNGPKTG-QERWE-EIGGY--- 400 (648)
T ss_pred cccHH------HHHHHHHHHHHHc-Cc----------------HHHHHHHHHHHHHHHHcCCCCC-CCccc-ccCCc---
Confidence 35776 8888887666653 11 3466889999999998753333 23332 22222
Q ss_pred CCCcchHHHHHHHHH---HHHHHcCCH----HHHHHHHHHHHHHHHhccccC
Q 003940 616 PGFLDDYAFLISGLL---DLYEFGSGT----KWLVWAIELQNTQDELFLDRE 660 (784)
Q Consensus 616 ~~~leDyA~li~aLL---~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~ 660 (784)
...-+|-++.||. ++.+..|++ +|++.|.++.+.+.+++|+++
T Consensus 401 --~~~T~a~v~aaL~~Aa~iA~~~g~~~~a~~w~~~Ad~i~~~i~~~~~~~~ 450 (648)
T TIGR01535 401 --SPSTLAAEIAGLTAAADIAEQNGDAGSAQKYRETADNWQKLIENWTFTTN 450 (648)
T ss_pred --CchhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhCcCCC
Confidence 2333455555554 445555664 589999999999999999986
No 317
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=43.80 E-value=12 Score=40.07 Aligned_cols=58 Identities=19% Similarity=0.328 Sum_probs=40.5
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc--ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~--~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (784)
..|||.++.+|+.||+.|-... + .+...|.+ +| .++-+...-.| .-...|+.+|..-.
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~s---W---~L~~ALsrfGn~-~l~~~~S~~~d-------------~~pn~Ptl~F~~~~ 115 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAES---W---ALYIALSRFGNF-SLEYHYSDPYD-------------NYPNTPTLIFNNYT 115 (249)
T ss_pred CCCeeEEEEEecccCccchhhH---H---HHHHHHHhcCCe-eeEEeecCccc-------------CCCCCCeEEEecCc
Confidence 5699999999999999997632 2 34556664 45 66666553322 23579999999764
No 318
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=41.81 E-value=32 Score=35.44 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=31.5
Q ss_pred CCcEEEEEcccCChhhhhhhhccc-CCHHHHHHHhcccEEEEEcC
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESF-EDEGVAKLLNDWFVSIKVDR 181 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf-~d~eVa~~ln~~FV~VkvD~ 181 (784)
+||-+|.|..-.|++|..++. ++ ..+.+.+.+.++-..+++.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~-~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEE-VYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcc-cccchHHHHHhCCCCCeEEEecc
Confidence 577799999999999999987 44 44678888766533344433
No 319
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=41.64 E-value=26 Score=32.53 Aligned_cols=58 Identities=22% Similarity=0.380 Sum_probs=33.4
Q ss_pred EEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003940 144 SIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (784)
Q Consensus 144 ~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~ 215 (784)
.++.++|.+|++.. ++|++ +.-+..+|..+.|.-.......+ +..|.|..-+++..|+
T Consensus 3 iY~~~~C~~c~ka~----------~~L~~~~i~~~~idi~~~~~~~~el~~~~----~~~~~~~~~l~~~~~~ 61 (111)
T cd03036 3 FYEYPKCSTCRKAK----------KWLDEHGVDYTAIDIVEEPPSKEELKKWL----EKSGLPLKKFFNTSGK 61 (111)
T ss_pred EEECCCCHHHHHHH----------HHHHHcCCceEEecccCCcccHHHHHHHH----HHcCCCHHHHHhcCCc
Confidence 47889999999854 34444 34444556554444333333333 3336677777776655
No 320
>TIGR01561 gde_arch glycogen debranching enzyme, archaeal type, putative. The seed for this model is composed of two uncharacterized archaeal proteins from Methanosarcina acetivorans and Sulfolobus solfataricus. Trusted cutoff is set so that essentially only archaeal members hit the model. The notable exceptions to archaeal membership are the Gram positive Clostridium perfringens which scores much better than some other archaea and the Cyanobacterium Nostoc sp. which scores just above the trusted cutoff. Noise cutoff is set to exclude the characterized eukaryotic glycogen debranching enzyme in S. cerevisiae. These cutoffs leave the prokaryotes Porphyromonas gingivalis and Deinococcus radiodurans below trusted but above noise. Multiple alignments including these last two species exhibit sequence divergence which may suggest a subtly different function for these prokaryotic proteins.
Probab=41.32 E-value=4.4e+02 Score=31.88 Aligned_cols=139 Identities=10% Similarity=0.065 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEecC-CCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCC
Q 003940 583 EVAESAASFIRRHLYDEQTHRLQHSFRN-GPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREG 661 (784)
Q Consensus 583 e~A~~~a~~l~~~l~d~~~G~l~~~~~d-g~~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~ 661 (784)
+.|+++.....+.+. +|.+-..+.+ |....-...|---+++.++-++++.|||..+++.....+..+.+.+.+..
T Consensus 313 ~~A~~iL~~fa~~~~---~GliPN~~~~~g~~p~YntvDAtLWfi~al~~Y~~~tgD~~~l~~l~p~l~~ii~~y~~G~- 388 (575)
T TIGR01561 313 DEAKEAILKFANLCK---RGLIPNNFIAFGGDPIYNGVDASLWAIHAIDKTFAYSQDFLFIRDVVDKVLDIIDNYCAGN- 388 (575)
T ss_pred HHHHHHHHHHHHHhH---CCCCCCccCCCCCCccCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCC-
Confidence 445555544444432 3555444333 22222245566678999999999999999887655544444444443311
Q ss_pred CcccccCCCCCccc-----cccccCCCC---------CCCChhHHHHHHHHH---HHHHhCCCCchHHHHHHHHHHHHHH
Q 003940 662 GGYFNTTGEDPSVL-----LRVKEDHDG---------AEPSGNSVSVINLVR---LASIVAGSKSDYYRQNAEHSLAVFE 724 (784)
Q Consensus 662 Ggyf~t~~~~~~l~-----~R~k~~~D~---------a~PS~Nsv~a~~L~r---L~~lt~~~~~~~y~e~A~~~l~~~~ 724 (784)
+|-...+.+ .++ +.+++..++ +.---|+....+|.. |+...|+. ...|.+.|+++-+.|.
T Consensus 389 -~~~i~~d~d-GLi~~g~~lTWMDa~~g~~~~tPR~G~~VEInALwYnAL~~~a~la~~~g~~-a~~y~~~A~~lk~~F~ 465 (575)
T TIGR01561 389 -DFAIGMDND-LIFHKGAPLTWMDAKVDERAVTPRAGAACEINALWYNALKTAEFLGNELGED-AESLEEKAAGVAKNFA 465 (575)
T ss_pred -CcEEEECCC-ccEeCCCCCCCCCCCCCCccCCCCCCccHHHHHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHH
Confidence 111111111 121 123333222 222345555555444 55555642 2568899998888887
Q ss_pred HHHH
Q 003940 725 TRLK 728 (784)
Q Consensus 725 ~~l~ 728 (784)
...-
T Consensus 466 ~~FW 469 (575)
T TIGR01561 466 EKFI 469 (575)
T ss_pred HhcC
Confidence 6653
No 321
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=40.56 E-value=5.3e+02 Score=28.27 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=43.4
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCccc
Q 003940 586 ESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYF 665 (784)
Q Consensus 586 ~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf 665 (784)
+.++-||.+.... +|+| +|+| --+.|-.|--+.|..|- +-|...|.++. +|.+++... -|.++|||-
T Consensus 213 d~lgwwlceRQ~~--sGGL-----NGRp---eKlpDVCYSwWvlsSL~-iigrl~wId~e-kL~~FIl~c-Qd~~~GGfs 279 (329)
T KOG0366|consen 213 DLLGWWLCERQLP--SGGL-----NGRP---EKLPDVCYSWWVLSSLA-IIGRLHWIDRE-KLTKFILAC-QDEETGGFS 279 (329)
T ss_pred HHHHHHHHhccCC--CCCC-----CCCc---ccCcchhhHHHHHhHHH-HhhhhhhccHH-HHHHHHHhc-CCCCCCCcC
Confidence 4566777776654 4665 3444 22445555555555553 34777888764 466666554 488899987
Q ss_pred ccCCC
Q 003940 666 NTTGE 670 (784)
Q Consensus 666 ~t~~~ 670 (784)
+.+++
T Consensus 280 DRpgd 284 (329)
T KOG0366|consen 280 DRPGD 284 (329)
T ss_pred CCCCC
Confidence 75543
No 322
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=39.92 E-value=86 Score=24.53 Aligned_cols=60 Identities=13% Similarity=-0.050 Sum_probs=35.8
Q ss_pred EEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 144 ~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
-++..+|++|++... +.+..+-.|-.+.++..+.+.. .+ ....+.+..|+.++ + |..+..
T Consensus 3 ly~~~~~~~~~~~~~-------~l~~~~i~~~~~~~~~~~~~~~--~~----~~~~~~~~~P~l~~-~--~~~~~e 62 (71)
T cd00570 3 LYYFPGSPRSLRVRL-------ALEEKGLPYELVPVDLGEGEQE--EF----LALNPLGKVPVLED-G--GLVLTE 62 (71)
T ss_pred EEeCCCCccHHHHHH-------HHHHcCCCcEEEEeCCCCCCCH--HH----HhcCCCCCCCEEEE-C--CEEEEc
Confidence 467788999998652 3344454577777776543332 22 22346778896653 2 666543
No 323
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=39.78 E-value=1.2e+02 Score=33.59 Aligned_cols=56 Identities=9% Similarity=0.021 Sum_probs=38.7
Q ss_pred ccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEc
Q 003940 124 FAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD 180 (784)
Q Consensus 124 ~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD 180 (784)
....++++++|.+.+.|.||++.. -|+....-....-.-.++.+..+++-+.++.+
T Consensus 179 ~~eL~~ai~~A~~~~GpalIeV~~-~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (301)
T PRK05778 179 VKQLVELIKKAISHKGFAFIDVLS-PCVTFNGRNTSTKSPAYMREYYKKRVYKLKLE 234 (301)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcC-CCCCCCCcCCcccCHHHHHHHHHhhcEEcccc
Confidence 345688999999999999999954 56666542222223456777888888888544
No 324
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A.
Probab=38.28 E-value=8.1 Score=35.01 Aligned_cols=39 Identities=15% Similarity=0.207 Sum_probs=18.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 003940 385 LANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (784)
Q Consensus 385 Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfy 424 (784)
....++.++...+++.+.+.++++++||++.. .++|||-
T Consensus 28 ~t~~~~~al~~~~~~~~~~ai~ka~~~l~~~Q-~~dG~w~ 66 (109)
T PF13243_consen 28 VTAALILALAAAGDAAVDEAIKKAIDWLLSHQ-NPDGGWG 66 (109)
T ss_dssp -------------TS-SSBSSHHHHHHHHH----TTS--S
T ss_pred ccccccccccccCCCCcHHHHHHHHHHHHHhc-CCCCCCC
Confidence 33344455555678889999999999999854 7789874
No 325
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=36.32 E-value=38 Score=32.56 Aligned_cols=59 Identities=10% Similarity=0.033 Sum_probs=30.9
Q ss_pred EEEcccCChhhhhhhhcccCCHHHHHHHhcc-cEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003940 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (784)
Q Consensus 143 l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~-FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~ 215 (784)
..++.++|++|++.. ++|+++ .-...+|..+.|.-.......++.+ |.+.--++++.|+
T Consensus 3 ~iY~~~~C~~C~ka~----------~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~~----~~g~~~lin~~~~ 62 (131)
T PRK01655 3 TLFTSPSCTSCRKAK----------AWLEEHDIPFTERNIFSSPLTIDEIKQILRMT----EDGTDEIISTRSK 62 (131)
T ss_pred EEEeCCCChHHHHHH----------HHHHHcCCCcEEeeccCChhhHHHHHHHHHHh----cCCHHHHHhcCcH
Confidence 457889999999843 456653 3333455555554333333333332 3333344455443
No 326
>PF05426 Alginate_lyase: Alginate lyase; InterPro: IPR008397 Alginate is a family of 1-4-linked copolymers of beta-D-mannuronic acid (M) and alpha-L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyse the depolymerisation of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end []. Two subfamilies of alginate lyase exist: the poly(beta-D-mannuronate) lyase, 4.2.2.3 from EC, and the poly(alpha-L-guluronate) lyase, 4.2.2.11 from EC. This entry represents a domain found in the former.; GO: 0045135 poly(beta-D-mannuronate) lyase activity, 0042122 alginic acid catabolic process, 0042597 periplasmic space; PDB: 4E1Y_A 4E25_A 4E23_B 1QAZ_A 1HV6_A 3NFV_A 3NNB_A.
Probab=35.96 E-value=5.5e+02 Score=27.11 Aligned_cols=36 Identities=25% Similarity=0.185 Sum_probs=26.7
Q ss_pred chhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003940 376 EKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDY 411 (784)
Q Consensus 376 EKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~f 411 (784)
-+-+..-|..+...+.+|.+|||+.|.+.|.+.++-
T Consensus 52 ~~~~~~~a~a~~~lAlay~~Tgd~~YA~~a~~iL~~ 87 (272)
T PF05426_consen 52 YSRLQRDADAAYALALAYYLTGDEKYADKAAEILNA 87 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344556777889999999999999999887776653
No 327
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=34.65 E-value=80 Score=27.95 Aligned_cols=65 Identities=28% Similarity=0.369 Sum_probs=37.8
Q ss_pred CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEc------------CCCCccHHHHHHHHHHHhcCCCCCC
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD------------REERPDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD------------~ee~pdi~~~y~~~~q~~~g~~G~P 205 (784)
.|| +.||+..|+-|-..-. --+.+|=+|=.|.+- |+.+|..++.- -.|.-|+|
T Consensus 2 skp--~lfgsn~Cpdca~a~e-------yl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk------~~gyiGIP 66 (85)
T COG4545 2 SKP--KLFGSNLCPDCAPAVE-------YLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVK------SNGYIGIP 66 (85)
T ss_pred CCc--eeeccccCcchHHHHH-------HHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhh------hcCcccce
Confidence 377 4799999999986532 112333334433332 23344444331 12566899
Q ss_pred cEEEECCCCceecc
Q 003940 206 LSVFLSPDLKPLMG 219 (784)
Q Consensus 206 ~~vfl~pdg~pi~~ 219 (784)
.. +++||+++.+
T Consensus 67 al--l~~d~~vVl~ 78 (85)
T COG4545 67 AL--LTDDGKVVLG 78 (85)
T ss_pred EE--EeCCCcEEEe
Confidence 75 5788998875
No 328
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=34.05 E-value=32 Score=31.33 Aligned_cols=61 Identities=11% Similarity=0.098 Sum_probs=32.6
Q ss_pred EEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003940 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (784)
Q Consensus 143 l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi 217 (784)
..++.++|.+|++.. ++|++ +.-...+|..+.|.-.....+.. +..|.+..-++++.+.+.
T Consensus 2 ~iY~~~~C~~c~ka~----------~~L~~~~i~~~~idi~~~~~~~~~l~~~~----~~~~~~~~~li~~~~~~~ 63 (105)
T cd02977 2 TIYGNPNCSTSRKAL----------AWLEEHGIEYEFIDYLKEPPTKEELKELL----AKLGLGVEDLFNTRGTPY 63 (105)
T ss_pred EEEECCCCHHHHHHH----------HHHHHcCCCcEEEeeccCCCCHHHHHHHH----HhcCCCHHHHHhcCCchH
Confidence 357889999999864 23333 22223344444444333333333 333555666667766654
No 329
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=33.91 E-value=1.1e+02 Score=30.75 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=31.2
Q ss_pred HHHHhhcCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCC
Q 003940 131 FAEARKRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE 182 (784)
Q Consensus 131 l~~Ak~e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~e 182 (784)
+..+.-.||+|+|+|| .++++-|-. |.-.|+|. .+.+++ +-+.|=|-.+
T Consensus 23 v~Lsd~~Gk~VVLyFYPk~~TpgCT~-Ea~~Frd~--~~ef~~~~a~V~GIS~D 73 (157)
T COG1225 23 VSLSDLRGKPVVLYFYPKDFTPGCTT-EACDFRDL--LEEFEKLGAVVLGISPD 73 (157)
T ss_pred EehHHhcCCcEEEEECCCCCCCcchH-HHHHHHHH--HHHHHhCCCEEEEEeCC
Confidence 4456667899999998 789999988 44566543 222332 4555555443
No 330
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=33.73 E-value=82 Score=31.13 Aligned_cols=32 Identities=16% Similarity=0.146 Sum_probs=18.1
Q ss_pred CChhhhhhhhcccCCHHHHHHHhcccE-EEEEcCCCCccHHHH
Q 003940 149 TCHWCHVMEVESFEDEGVAKLLNDWFV-SIKVDREERPDVDKV 190 (784)
Q Consensus 149 wC~wC~~Me~etf~d~eVa~~ln~~FV-~VkvD~ee~pdi~~~ 190 (784)
||++|+.+. ++|+..=| ...+|++..++..+.
T Consensus 15 t~~~C~~ak----------~iL~~~~V~~~e~DVs~~~~~~~E 47 (147)
T cd03031 15 TFEDCNNVR----------AILESFRVKFDERDVSMDSGFREE 47 (147)
T ss_pred cChhHHHHH----------HHHHHCCCcEEEEECCCCHHHHHH
Confidence 899998764 34443222 234576665554433
No 331
>PLN02567 alpha,alpha-trehalase
Probab=33.68 E-value=6.3e+02 Score=30.43 Aligned_cols=103 Identities=12% Similarity=0.098 Sum_probs=59.9
Q ss_pred hchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCC----
Q 003940 543 VSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSK---- 614 (784)
Q Consensus 543 tsWNal~I~---ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~~---- 614 (784)
++-|+++.. .|++.++.+|+.. ...+|.+.|.+..+.|.+.+||++.|.++.-. +.++..
T Consensus 328 VDLNa~L~~~e~~LA~la~~lG~~~------------~a~~~~~~A~~~~~aI~~~lWdee~G~y~Dydl~~~~~~~~~~ 395 (554)
T PLN02567 328 VDLNAFLLKMELDIAFFAKLLGDKA------------TAERFLKAAKARKRAINAVLWNEEMGQWLDYWLPPNGATCQES 395 (554)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCChH------------HHHHHHHHHHHHHHHHHHHhcCcccCeEEeecccccccccccc
Confidence 455677744 6788888888621 12568899999999999999999887666542 333211
Q ss_pred --CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hccc
Q 003940 615 --APGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDE-LFLD 658 (784)
Q Consensus 615 --~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~-~F~D 658 (784)
+....---.+.+.+++=|+-=.-++. -..|..+.+.+.+ .++.
T Consensus 396 ~~~~~~~~~~~~~~s~f~PLw~g~~~~~-~~~a~~v~~~l~~~~l~~ 441 (554)
T PLN02567 396 YTWDAENQNTNVYASNFVPLWCGVVPPG-DAKVEKVVESLKSSGLVL 441 (554)
T ss_pred ccccccccccCccHHHHHHHHcCCCChh-hHHHHHHHHHHHhccCcc
Confidence 00000001234567777764322321 1246667776653 4543
No 332
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=33.19 E-value=69 Score=25.07 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=25.2
Q ss_pred chHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 003940 500 SSASASKLGMPLEKYLNILGECRRKLFD 527 (784)
Q Consensus 500 ~~~~a~~~g~~~~~l~~~l~~~r~kL~~ 527 (784)
..++|+.+|++...+......+.++|.+
T Consensus 23 ~~eIa~~lg~s~~~V~~~~~~al~kLR~ 50 (50)
T PF04545_consen 23 LEEIAERLGISRSTVRRILKRALKKLRK 50 (50)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999999863
No 333
>PRK12559 transcriptional regulator Spx; Provisional
Probab=31.87 E-value=42 Score=32.33 Aligned_cols=61 Identities=8% Similarity=0.058 Sum_probs=32.5
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEE-EEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVS-IKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~-VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~p 216 (784)
+..++.++|..|++.. ++|+++=|. ..+|..+.|.-.......++.. |.|..-+++..|+.
T Consensus 2 i~iY~~~~C~~crkA~----------~~L~~~gi~~~~~di~~~~~s~~el~~~l~~~----~~g~~~lin~~~~~ 63 (131)
T PRK12559 2 VVLYTTASCASCRKAK----------AWLEENQIDYTEKNIVSNSMTVDELKSILRLT----EEGATEIISTRSKT 63 (131)
T ss_pred EEEEeCCCChHHHHHH----------HHHHHcCCCeEEEEeeCCcCCHHHHHHHHHHc----CCCHHHHHhcCcHH
Confidence 3467899999999843 466654333 3345554444333333333322 34444555555443
No 334
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=31.13 E-value=79 Score=34.31 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=41.2
Q ss_pred CcEEEEEcccCChhhhhhhhcccCCHHHHHHH-hcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003940 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (784)
Q Consensus 139 KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~l-n~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi 217 (784)
..|+|.||-+.|.-|..|+. .+. .+|... .-.||-|....- |.+ ..| ...+.|+.+++- +|..+
T Consensus 147 ~~VVVHiY~~~~~~C~~mn~-~L~--~LA~kyp~vKFvkI~a~~~--~~~-~~f--------~~~~LPtllvYk-~G~l~ 211 (265)
T PF02114_consen 147 TWVVVHIYEPGFPRCEIMNS-CLE--CLARKYPEVKFVKIRASKC--PAS-ENF--------PDKNLPTLLVYK-NGDLI 211 (265)
T ss_dssp -EEEEEEE-TTSCCHHHHHH-HHH--HHHHH-TTSEEEEEEECGC--CTT-TTS---------TTC-SEEEEEE-TTEEE
T ss_pred cEEEEEEEeCCCchHHHHHH-HHH--HHHHhCCceEEEEEehhcc--Ccc-cCC--------cccCCCEEEEEE-CCEEE
Confidence 46999999999999999985 443 444433 335666666432 322 222 456899999986 78777
Q ss_pred cc
Q 003940 218 MG 219 (784)
Q Consensus 218 ~~ 219 (784)
..
T Consensus 212 ~~ 213 (265)
T PF02114_consen 212 GN 213 (265)
T ss_dssp EE
T ss_pred Ee
Confidence 54
No 335
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=30.76 E-value=1.3e+02 Score=34.16 Aligned_cols=101 Identities=17% Similarity=0.236 Sum_probs=33.5
Q ss_pred CCCcchHHHHHHHHHHHHHHcCCHHHHH----HHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCCh--
Q 003940 616 PGFLDDYAFLISGLLDLYEFGSGTKWLV----WAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSG-- 689 (784)
Q Consensus 616 ~~~leDyA~li~aLL~LYeaTgd~~yL~----~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~-- 689 (784)
....|....+|....+.|..|||..||+ .+++.++.+.. +|.++.|..+...... ..+|.-.-.|
T Consensus 95 ~~~~D~~~~fVL~vyr~~~~TGD~~fL~~~wp~v~~a~~~~~~--~D~d~dGl~e~~g~~D-------~TyD~~~~~G~s 165 (365)
T PF04685_consen 95 YAWKDLNPKFVLQVYRDYKWTGDRDFLKEMWPAVKKAMDYLLS--WDRDGDGLPENPGHPD-------QTYDDWSMYGPS 165 (365)
T ss_dssp ----------------------------EHHHHHHHHHHHHHH--SB--TTS-BEEET----------SSSTT-EEEEEE
T ss_pred cccccccccccccccccccccccchhhhhHHHHHHHHHHHHHh--hCCCCCCCCCCCCCCc-------cccccCCeeCCC
Confidence 3455667788999999999999999975 56666666665 5766555544332100 2334432112
Q ss_pred ---hHH---HHHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHH
Q 003940 690 ---NSV---SVINLVRLASIVAGSK-SDYYRQNAEHSLAVFET 725 (784)
Q Consensus 690 ---Nsv---~a~~L~rL~~lt~~~~-~~~y~e~A~~~l~~~~~ 725 (784)
++. ++.++.+|+.+.|+.+ ..+|++.+++.-+.+..
T Consensus 166 ay~~~L~laAL~A~~emA~~lgd~~~a~~y~~~~~~~~~~~~~ 208 (365)
T PF04685_consen 166 AYCGGLWLAALRAAAEMAKILGDPELAAKYRELAEKAKKAFNK 208 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 222 5556678898888621 13455555554444443
No 336
>COG3387 SGA1 Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=30.36 E-value=1.1e+03 Score=28.86 Aligned_cols=207 Identities=23% Similarity=0.207 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCceeecccCCCccccccccccCCceEEechHHHHHHhh----hhHHHHHHHhcc-----
Q 003940 400 FYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILG----EHAILFKEHYYL----- 470 (784)
Q Consensus 400 ~y~~~A~~t~~fl~~~m~~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg----~~~~l~~~~f~l----- 470 (784)
.|..+.++..-.++.....|-|++++|.+.+-....++.. |-.|+|-.+-...+.+ -..+.+.+.|..
T Consensus 241 ~~~~~~~rS~l~l~~~~~~~~G~ivAs~t~~l~~~~~g~~---dY~y~W~RD~~~~~~AL~~~G~~~~a~~~f~~l~~~~ 317 (612)
T COG3387 241 AYASALYRSALVLKALNYNPTGAIVASPTTSLPELIGGTR---DYRYVWPRDASYAALALLAIGYKKEALRFFEFLPDVQ 317 (612)
T ss_pred hhHHHHHHHHHHHHHcccCCCCcEEEcCCCCccccCCCCC---CceEEccCcHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 4444455555556666666669999998877543333222 7899999988886655 112223333322
Q ss_pred cCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHH
Q 003940 471 KPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVI 550 (784)
Q Consensus 471 ~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I 550 (784)
+++|++ .++...... .+++ . .+--...++..| |.+.+.++..
T Consensus 318 ~~~~~~------------~~~y~~~g~----~~~~------~-----------w~~~~~~~~~~p-----v~~~~~a~~~ 359 (612)
T COG3387 318 TPNGKL------------YHKYSIDGS----DLAE------S-----------WLPVSGYYNSFP-----VRIGNTALVQ 359 (612)
T ss_pred CCCCce------------eeEEecCCC----cccc------c-----------cccccCCCCCCc-----eEEcchhhHH
Confidence 222211 111000000 0000 0 000001123344 2233458888
Q ss_pred HHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHH------hccccCCCeEEEEecCCCCCCCCCcchHHH
Q 003940 551 SSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRR------HLYDEQTHRLQHSFRNGPSKAPGFLDDYAF 624 (784)
Q Consensus 551 ~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~------~l~d~~~G~l~~~~~dg~~~~~~~leDyA~ 624 (784)
++|..-+++.++-.. + .+.+.......++++.+ ..-.|. ..++. -+-| .+.+--+.
T Consensus 360 ~~ld~~~~~~~~~~~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~WE-er~g-----~~~yt~~~ 421 (612)
T COG3387 360 GALDVYGSIMNDIYF---Y--------AKYYAIYILPAADYLRRMEKIKANLPTPD-FDLWE-ERGG-----HFTYTKAT 421 (612)
T ss_pred HHHHHHHHHHHHHHH---H--------HhhcchhhHHHHHHHHHHHhhhcCCCCCc-cceec-ccCC-----cccchHHH
Confidence 888887777766210 0 02233455666666665 222222 22221 1111 23333344
Q ss_pred HHHHH---HHHHHHcCC----HHHHHHHHHHHHHHHHhccccCCCcccc
Q 003940 625 LISGL---LDLYEFGSG----TKWLVWAIELQNTQDELFLDREGGGYFN 666 (784)
Q Consensus 625 li~aL---L~LYeaTgd----~~yL~~A~~L~~~~~~~F~D~~~Ggyf~ 666 (784)
++.|| .++.+..|| +.|...|.++.+.+.+++++.++ +||-
T Consensus 422 ~~agLd~A~~lA~~~gd~~~a~~~~~~ad~ik~~v~~~~~~~~~-~~f~ 469 (612)
T COG3387 422 VYAGLDAAADLAEEFGDKGSAEHWRKTADELKEAVLRRGYAEDG-GYFV 469 (612)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhcccccC-Ceee
Confidence 44444 445566675 46889999999999999998764 5554
No 337
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=30.10 E-value=2.8e+02 Score=31.42 Aligned_cols=76 Identities=22% Similarity=0.302 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHH--c-cCChHHHHHHHHH-HH
Q 003940 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFS--L-TKDVFYSYICRDI-LD 410 (784)
Q Consensus 335 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~--~-t~d~~y~~~A~~t-~~ 410 (784)
....+-+..-|... -+-.|||-. .--+.|| |+.+|+..-. + -+++.|..+-|++ ++
T Consensus 119 d~v~~~~i~fL~~c------~~PeGGfgG----GPGQl~H----------LA~TYAAVnaL~~~~~e~A~~~InR~~l~~ 178 (423)
T KOG0365|consen 119 DDVKENAIDFLFTC------QGPEGGFGG----GPGQLPH----------LAPTYAAVNALCLCGSEDAYSSINREKLYQ 178 (423)
T ss_pred HHHHHHHHHHHHhc------CCCCCCCCC----CCccchh----------hhHHHHHHHHHHhcCcHHHHHHhhHHHHHH
Confidence 34444444445433 224566654 4567788 3444443222 1 2345566666554 56
Q ss_pred HHHHhccCCCCceeecccCCC
Q 003940 411 YLRRDMIGPGGEIFSAEDADS 431 (784)
Q Consensus 411 fl~~~m~~~~Ggfysa~DADS 431 (784)
||. .|.+|+|||+--.+..+
T Consensus 179 fL~-slK~~dGgFrmh~~GE~ 198 (423)
T KOG0365|consen 179 FLF-SLKDPDGGFRMHVEGEV 198 (423)
T ss_pred HHH-HhcCCCCCeEeecCCcc
Confidence 665 59999999998766554
No 338
>PRK10137 alpha-glucosidase; Provisional
Probab=29.82 E-value=1.2e+03 Score=29.35 Aligned_cols=56 Identities=21% Similarity=0.229 Sum_probs=40.9
Q ss_pred chhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE
Q 003940 539 DKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH 606 (784)
Q Consensus 539 dKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~ 606 (784)
+--+.+|-..+...|++.++++|+.. ...+|.+.|.++.+.|.+.|||++.|-++.
T Consensus 577 ~VDLNsyLy~a~~~LA~LAe~LG~~e------------~A~~~~~~A~~Lr~aIn~~~WDee~GfY~D 632 (786)
T PRK10137 577 SVDQASYMYSDNHYLAEMATILGKPE------------EAKRYRQLAQQLADYINTCMFDETTGFYYD 632 (786)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCChH------------HHHHHHHHHHHHHHHHHHHccCCcCCeEEE
Confidence 43344444555578999999998721 125688999999999999999988776653
No 339
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=29.33 E-value=86 Score=37.20 Aligned_cols=43 Identities=19% Similarity=0.275 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCH----HHHHHHHHHHHHHHHhccccCCCcccccC
Q 003940 626 ISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 668 (784)
Q Consensus 626 i~aLL~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (784)
...|..+++..|+. .|.++|.++.+.+.+.|||++.|.||+-.
T Consensus 317 e~~LA~~a~~lG~~~~a~~~~~~A~~~~~aI~~~lWdee~g~~~Dyd 363 (512)
T PF01204_consen 317 EKDLAEFAELLGDQEKAEEYRQRAEERKEAINQYLWDEEDGFYYDYD 363 (512)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHTEETTTTEE--EE
T ss_pred HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhCccCCCCeEEeee
Confidence 34556778888865 68999999999999999999999999854
No 340
>COG3408 GDB1 Glycogen debranching enzyme [Carbohydrate transport and metabolism]
Probab=29.32 E-value=7.5e+02 Score=30.42 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEe-c--CCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Q 003940 583 EVAESAASFIRRHLYDEQTHRLQHSF-R--NGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDR 659 (784)
Q Consensus 583 e~A~~~a~~l~~~l~d~~~G~l~~~~-~--dg~~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~ 659 (784)
+.|+.....+.++. +.|++.|.. . +|.+ .-+..+.-=..|..+.+.+..|+|..+++........+.+.+. .
T Consensus 303 elArg~L~~~a~~~---~~GkIPhe~~~~~~~~~-~Y~tvD~t~~~i~~~~~y~~~t~d~~~i~e~~~~v~~a~d~~~-~ 377 (641)
T COG3408 303 ELARGTLNTLARYS---EPGKIPHEILLSIPGEP-YYNTVDATPLFIYLLGAYLKYTGDTEFIRELWPSVGAALDWIL-K 377 (641)
T ss_pred HHHHHHHHHHHhhc---cCCCCcchhhhcCCCcc-eeccCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-h
Confidence 56777777776663 458888875 2 2322 1233444556788888999999999988776666555555442 1
Q ss_pred CCCcc-cccCCCC--Cc-cccccccCCCCC---CC------ChhHH---HHHHHHHHHHHhCCCC-chHHHHHHHHHHHH
Q 003940 660 EGGGY-FNTTGED--PS-VLLRVKEDHDGA---EP------SGNSV---SVINLVRLASIVAGSK-SDYYRQNAEHSLAV 722 (784)
Q Consensus 660 ~~Ggy-f~t~~~~--~~-l~~R~k~~~D~a---~P------S~Nsv---~a~~L~rL~~lt~~~~-~~~y~e~A~~~l~~ 722 (784)
.+ .+ |.+.++. +. -...+++..+.. .| --|++ +..++.+++.+.++.+ .++|.+.|+++.+.
T Consensus 378 ~~-~~~~~~~~~~l~~~~~~~tW~Ds~~~~~~~~~~~g~pi~i~al~~~~~~a~~~~a~ll~~~~~~~~~~~~a~~l~~~ 456 (641)
T COG3408 378 GF-DFGFDTYGDGLLEGGSNQTWMDSGDDIFAVTPRAGKPVAINALQYYALKAALRLANLLGDEEDAARLEKIARRLKES 456 (641)
T ss_pred cC-CccceecCcccccCCCCCCCeecCCccccccCCCCCceeHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 11 11 2221110 00 011122221111 11 24555 6677788888887211 36788889999998
Q ss_pred HHHHHHH
Q 003940 723 FETRLKD 729 (784)
Q Consensus 723 ~~~~l~~ 729 (784)
|......
T Consensus 457 F~~~fw~ 463 (641)
T COG3408 457 FEAKFWN 463 (641)
T ss_pred HHHHhhC
Confidence 8776643
No 341
>TIGR02393 RpoD_Cterm RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc.
Probab=28.92 E-value=1.1e+02 Score=32.06 Aligned_cols=28 Identities=18% Similarity=0.182 Sum_probs=25.7
Q ss_pred chHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 003940 500 SSASASKLGMPLEKYLNILGECRRKLFD 527 (784)
Q Consensus 500 ~~~~a~~~g~~~~~l~~~l~~~r~kL~~ 527 (784)
..++|+.+|++.+.+.+....++.+|..
T Consensus 199 ~~EIA~~lgis~~~V~q~~~~al~kLr~ 226 (238)
T TIGR02393 199 LEEVGKEFNVTRERIRQIESKALRKLRH 226 (238)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999999999976
No 342
>PLN02909 Endoglucanase
Probab=28.28 E-value=1.1e+03 Score=28.11 Aligned_cols=75 Identities=8% Similarity=-0.125 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC--CCCcc-------------------hHHHHHHHHHHHHHHcC
Q 003940 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA--PGFLD-------------------DYAFLISGLLDLYEFGS 637 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~--~~~le-------------------DyA~li~aLL~LYeaTg 637 (784)
+.+++.++=..+||++... ..|.+++...++..+. ++.+| --+.++.+|...+.+..
T Consensus 120 ~d~ldeikw~~D~llk~~~--~~~~~y~qVg~~~~Dh~~W~~Pe~~~~~R~~~~i~~~~pgtd~a~~~AAAlA~as~vfk 197 (486)
T PLN02909 120 ENVRAAIRWGTDYFLKAAS--RKNRLYVQVGDPNLDHQCWVRPENMKTPRTVLEIDEKTPGTEIAAETAAAMAASSMVFR 197 (486)
T ss_pred HHHHHHHHHHHHHHHHhcc--CCCeEEEEeCCCCCCcccCCChhhccCCceeEecCCCCCCcHHHHHHHHHHHHHHHhhc
Confidence 7899999999999998653 3578888754432111 11111 22445556666665554
Q ss_pred --CH----HHHHHHHHHHHHHHHh
Q 003940 638 --GT----KWLVWAIELQNTQDEL 655 (784)
Q Consensus 638 --d~----~yL~~A~~L~~~~~~~ 655 (784)
|+ +.|+.|+++++++..+
T Consensus 198 ~~D~~yA~~lL~~Ak~~y~fA~~~ 221 (486)
T PLN02909 198 HVDHKYSRRLLNKAKLLFKFAKAH 221 (486)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhC
Confidence 44 4588999998888664
No 343
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=28.09 E-value=2.5e+02 Score=29.80 Aligned_cols=129 Identities=9% Similarity=0.086 Sum_probs=80.6
Q ss_pred CCcccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhccc---CCHHHHHHHhcccEEEEEcCCCCc-cHHHHHHHH
Q 003940 119 NPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESF---EDEGVAKLLNDWFVSIKVDREERP-DVDKVYMTY 194 (784)
Q Consensus 119 ~~v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf---~d~eVa~~ln~~FV~VkvD~ee~p-di~~~y~~~ 194 (784)
.|-.|+.+.++-++-+++.|---++.+++---. ++ ...+| +++++.+.|+.. + ...+ ...+ -+.-.+...
T Consensus 88 ~p~~~~~~a~~il~~~~~~gv~~Ii~Lgg~~~~-~~--~~~v~~~at~~~~~~~l~~~-~-~~~~-~g~i~G~~g~ll~~ 161 (238)
T TIGR00161 88 PPAVVYDMTNAIVEWMVRNNSRELISFNGMVVR-EK--SQPVFGAANSQELIERLKDL-I-EIFP-FGNLNGISGTLLTR 161 (238)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEEeCccCC-CC--CCcEEEEECCHHHHHHHHHh-c-CcCC-CCEEechhHHHHHH
Confidence 456799999999999999988777777652221 12 23333 478899999765 1 1111 1111 222333333
Q ss_pred HHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHHHHh--hchHHHHHHHHHHHHHHHHHhh
Q 003940 195 VQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD--KKRDMLAQSGAFAIEQLSEALS 268 (784)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~~~~--~~~~~l~~~a~~~~~~l~~~~~ 268 (784)
+ ...|+|..+++-+- .+++| +. ..=..+|+.+.+.+. =+-++|++.|+++.+.+++...
T Consensus 162 a----~~~gi~~i~Ll~et------~~~~P-DP----~AA~~ll~~l~~l~~~~id~~~L~e~Ae~ie~~~~el~e 222 (238)
T TIGR00161 162 C----AVNDIPAICLLAET------LGPYP-DP----RAAASLVEVLNKMLNTNVDPEPLLKEAEAIESRLKKLAE 222 (238)
T ss_pred H----HHcCCCEEEEEEeC------CCCCC-CH----HHHHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence 3 34599999999654 23444 21 245566666666664 3788999999988888876543
No 344
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=28.04 E-value=1e+02 Score=26.15 Aligned_cols=62 Identities=10% Similarity=0.049 Sum_probs=32.6
Q ss_pred EEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 144 ~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
-++.++|++|++-. .+.+.++=.|-.+.++.. ......+ ....+.+..|+.+ .+.+|..++.
T Consensus 4 Ly~~~~sp~~~kv~-------~~L~~~gi~y~~~~v~~~--~~~~~~~----~~~~p~~~vP~l~-~~~~~~~l~e 65 (77)
T cd03041 4 LYEFEGSPFCRLVR-------EVLTELELDVILYPCPKG--SPKRDKF----LEKGGKVQVPYLV-DPNTGVQMFE 65 (77)
T ss_pred EecCCCCchHHHHH-------HHHHHcCCcEEEEECCCC--hHHHHHH----HHhCCCCcccEEE-eCCCCeEEEc
Confidence 45678999999754 222333334555544322 1111122 2345778899864 2334666654
No 345
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=27.93 E-value=1.7e+02 Score=28.06 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=33.0
Q ss_pred HHHHHHhcc-cEEEEEcCCCCccHHHHHHHHHHHhcCC--CCCCcEEEECCCCc
Q 003940 165 GVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGG--GGWPLSVFLSPDLK 215 (784)
Q Consensus 165 eVa~~ln~~-FV~VkvD~ee~pdi~~~y~~~~q~~~g~--~G~P~~vfl~pdg~ 215 (784)
+||+.+... +..+-+|.++.+.+.+.| |. .++|+.++++.++.
T Consensus 48 ~vAk~~kgk~i~Fv~vd~~~~~~~~~~f--------gl~~~~~P~v~i~~~~~~ 93 (130)
T cd02983 48 SVAEKFKKKPWGWLWTEAGAQLDLEEAL--------NIGGFGYPAMVAINFRKM 93 (130)
T ss_pred HHHHHhcCCcEEEEEEeCcccHHHHHHc--------CCCccCCCEEEEEecccC
Confidence 788888777 888889998876654433 64 47999999999764
No 346
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=27.43 E-value=32 Score=32.30 Aligned_cols=68 Identities=19% Similarity=0.190 Sum_probs=41.6
Q ss_pred CCcEEEEEcccCChhhhhhhhcccC----CHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFE----DEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~----d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (784)
+...+|.|..+ |. +. .|++. =||+.+.+...+-..-|+.+..+.+...| |+..||+.||+- +
T Consensus 26 ~~~~vlf~~gD-p~---r~-~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~--------gv~~~PaLvf~R-~ 91 (107)
T PF07449_consen 26 PGDAVLFFAGD-PA---RF-PETADVAVILPELVKAFPGRFRGAVVARAAERALAARF--------GVRRWPALVFFR-D 91 (107)
T ss_dssp CSCEEEEESS--TT---TS-TTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHH--------T-TSSSEEEEEE-T
T ss_pred CCcEEEEECCC-CC---cC-cccccceeEcHHHHHhhhCccceEEECchhHHHHHHHh--------CCccCCeEEEEE-C
Confidence 44455555543 33 32 34444 35666666666777777766566666666 888999999995 4
Q ss_pred Cceecc
Q 003940 214 LKPLMG 219 (784)
Q Consensus 214 g~pi~~ 219 (784)
|+++..
T Consensus 92 g~~lG~ 97 (107)
T PF07449_consen 92 GRYLGA 97 (107)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 676643
No 347
>PF03200 Glyco_hydro_63: Mannosyl oligosaccharide glucosidase; InterPro: IPR004888 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63 (GH63 from CAZY). They catalyse the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase 3.2.1.106 from EC is the first enzyme in the N-linked oligosaccharide processing pathway. ; GO: 0004573 mannosyl-oligosaccharide glucosidase activity, 0009311 oligosaccharide metabolic process
Probab=27.39 E-value=3.1e+02 Score=34.52 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHcCC--H--HHHHHHHHHHHHHHHhccccCCCcccccCCCCC
Q 003940 623 AFLISGLLDLYEFGSG--T--KWLVWAIELQNTQDELFLDREGGGYFNTTGEDP 672 (784)
Q Consensus 623 A~li~aLL~LYeaTgd--~--~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~ 672 (784)
|++...++++....+. + +|.+.+..|.+.+.+..||++.|.||+......
T Consensus 565 a~~a~~M~~IA~~L~~~d~~~ef~~~~~~i~~~l~~~hWdeedgfYyD~~~~~~ 618 (801)
T PF03200_consen 565 AFFALNMARIALELGKEDDAYEFFEHFEYISDALNKLHWDEEDGFYYDVGLHPD 618 (801)
T ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCCcccCceeeeccccc
Confidence 4455555555554443 3 356999999999999999999998988664433
No 348
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=27.26 E-value=1.2e+02 Score=29.81 Aligned_cols=20 Identities=5% Similarity=-0.034 Sum_probs=14.8
Q ss_pred cCCcEEEEE-cccCChhhhhh
Q 003940 137 RDVPIFLSI-GYSTCHWCHVM 156 (784)
Q Consensus 137 e~KpI~l~~-~~~wC~wC~~M 156 (784)
.+|+|+|.| -.+||+.|..-
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e 48 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQ 48 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchh
Confidence 466666665 48999999873
No 349
>PRK05901 RNA polymerase sigma factor; Provisional
Probab=27.24 E-value=1.1e+02 Score=36.41 Aligned_cols=46 Identities=17% Similarity=0.140 Sum_probs=36.7
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 003940 460 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 527 (784)
Q Consensus 460 ~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~ 527 (784)
+..++..+||+.... + .+..+++..+|++.+.+.++-..+..||+.
T Consensus 452 Er~VI~lRyGL~~~e---------------~-------~TL~EIa~~lGVSrERVRQIe~kAL~KLR~ 497 (509)
T PRK05901 452 EAGVIRMRFGLTDGQ---------------P-------KTLDEIGQVYGVTRERIRQIESKTLRKLRH 497 (509)
T ss_pred HHHHHHHHhhccCCC---------------C-------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 466888889995321 1 235789999999999999999999999976
No 350
>PLN02340 endoglucanase
Probab=26.07 E-value=1.3e+03 Score=28.32 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-----------C----------CCcchHHHHHHHHHHHHHHcC
Q 003940 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA-----------P----------GFLDDYAFLISGLLDLYEFGS 637 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~-----------~----------~~leDyA~li~aLL~LYeaTg 637 (784)
+.+|+.++=..||+++-.-. .+.|+....||..+. . .-.+--+.++.+|...+.+..
T Consensus 116 ~~~ldeirw~~Dyllk~~~~--~~~~~~qVGdg~~DH~~W~~PE~~~~~R~~y~i~~~~pgSd~a~e~AAAlAaas~vfk 193 (614)
T PLN02340 116 QRTLWAIRWGTDYFIKAHTQ--PNVLWGQVGDGDSDHYCWERAEDMTTPRTAYKLDQNHPGSDLAGETAAALAAASKAFK 193 (614)
T ss_pred HHHHHHHHHHHHHHHHhcCC--CCeEEEEeCCCCcccccCCChhhcCCcCceeecCCCCCccHHHHHHHHHHHHHHHhcc
Confidence 78999999999999986533 456666554442110 0 111111334444444554443
Q ss_pred --CHH----HHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChh--HHHHHHHHHHHHHhCCCCc
Q 003940 638 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGN--SVSVINLVRLASIVAGSKS 709 (784)
Q Consensus 638 --d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~N--sv~a~~L~rL~~lt~~~~~ 709 (784)
|+. .|+.|+++++++... .|.|-..... ..+..+|.. -=++-+-..|++.||+
T Consensus 194 ~~D~~YA~~lL~~Ak~ly~fA~~~-----~g~y~~s~~~-----------a~~~Y~ss~~~DEl~WAAawLy~ATgd--- 254 (614)
T PLN02340 194 PYNSSYSDLLLVHAKQLFSFADKF-----RGLYDDSIQN-----------AKKFYTSSGYSDELLWAAAWLYRATGD--- 254 (614)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhC-----CCCccCCCCc-----------cccCCCCCCcchHHHHHHHHHHHHhCC---
Confidence 444 588888888887652 2333111000 012233311 1255566688999986
Q ss_pred hHHHHHHHHH
Q 003940 710 DYYRQNAEHS 719 (784)
Q Consensus 710 ~~y~e~A~~~ 719 (784)
..|.+.+...
T Consensus 255 ~~Yl~~~~~~ 264 (614)
T PLN02340 255 EYYLKYVVDN 264 (614)
T ss_pred HHHHHHHHHH
Confidence 7899887654
No 351
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=25.58 E-value=2.2e+02 Score=24.97 Aligned_cols=62 Identities=13% Similarity=0.119 Sum_probs=37.3
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+.-++...|++|++.. -+.+..+-.|-.+.+|..+.+ ..+. ..+..+.+|..+. .+|..++.
T Consensus 19 ~~Ly~~~~sp~~~kv~-------~~L~~~gl~~~~~~v~~~~~~---~~~~----~~np~~~vPvL~~--~~g~~l~e 80 (89)
T cd03055 19 IRLYSMRFCPYAQRAR-------LVLAAKNIPHEVININLKDKP---DWFL----EKNPQGKVPALEI--DEGKVVYE 80 (89)
T ss_pred EEEEeCCCCchHHHHH-------HHHHHcCCCCeEEEeCCCCCc---HHHH----hhCCCCCcCEEEE--CCCCEEEC
Confidence 3345678899999874 233344445777788776432 1121 2346778898873 34666654
No 352
>PRK13272 treA trehalase; Provisional
Probab=25.43 E-value=1.2e+03 Score=28.17 Aligned_cols=97 Identities=16% Similarity=0.204 Sum_probs=60.4
Q ss_pred chHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCCCCc
Q 003940 544 SWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPGFL 619 (784)
Q Consensus 544 sWNal~I~---ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~~~~~~l 619 (784)
+-|++++. .|++.++.+|+.. ...+|.+.|.+..+.|.+.|||+ .|.++.- .+.++.
T Consensus 341 DLNalL~~~e~~LA~~~~~lG~~~------------~a~~~~~~A~~r~~aI~~~lWde-~G~~~DYD~~~~~~------ 401 (542)
T PRK13272 341 DLNSLLYHLERTLAQACASSGLAA------------CSQDYAALAQQRKQAIDAHLWNP-AGYYADYDWQTRTL------ 401 (542)
T ss_pred cHHHHHHHHHHHHHHHHHHhCChH------------HHHHHHHHHHHHHHHHHHhccCc-CceEEeeccCCCCc------
Confidence 46788865 6677777777521 12568999999999999999996 5554432 233322
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCccc
Q 003940 620 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYF 665 (784)
Q Consensus 620 eDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf 665 (784)
.+ .+.+.+++=|+-=.-++ +.|..+.+.+...|.. .||.-
T Consensus 402 ~~-~~s~a~f~PLwag~a~~---~~a~~l~~~l~~~~l~--~gGlp 441 (542)
T PRK13272 402 SE-QVTAAALYPLFAGLASD---DRAKRTADSVRAQLLR--PGGLA 441 (542)
T ss_pred cc-cccHHHHHHHHcCCCCH---HHHHHHHHHHHHhccC--CCCcC
Confidence 22 34467788887433333 4566777766666643 35543
No 353
>PLN02175 endoglucanase
Probab=25.35 E-value=1.2e+03 Score=27.71 Aligned_cols=121 Identities=11% Similarity=-0.040 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC--CCCCcc-------------------hHHHHHHHHHHHHHHcC
Q 003940 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK--APGFLD-------------------DYAFLISGLLDLYEFGS 637 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~--~~~~le-------------------DyA~li~aLL~LYeaTg 637 (784)
+..++..+=..|||++-.. ++.|.+++...++..+ .++.+| --+.++.+|...+.+..
T Consensus 108 ~~~l~~lkw~~Dyllk~~~-~~~g~vy~qVG~~~~Dh~~W~~PE~~~~~R~~~~is~~~PGSd~aae~AAALAaaS~vfk 186 (484)
T PLN02175 108 ENARVNIRWATDYLLKCAR-ATPGKLYVGVGDPNVDHKCWERPEDMDTPRTVYSVSPSNPGSDVAAETAAALAAASMVFR 186 (484)
T ss_pred HHHHHHHHHHHHHHHhCcC-CCCCeEEEEeCCCCCCcccCCChhHccCccceEecCCCCCccHHHHHHHHHHHHHHHHhc
Confidence 4566666777888887653 3457888865444221 111222 22345555555665554
Q ss_pred --CHH----HHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCCh---hHHHHHHHHHHHHHhCCCC
Q 003940 638 --GTK----WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSG---NSVSVINLVRLASIVAGSK 708 (784)
Q Consensus 638 --d~~----yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~---Nsv~a~~L~rL~~lt~~~~ 708 (784)
|+. .|+.|+++++++... .|.|.++..... . ...+|. +-=++-+-..|++.||+
T Consensus 187 ~~D~~YA~~lL~~Ak~ly~fA~~~-----~g~y~~~~~~~~------~----~~Y~s~s~y~DEl~WAAawLY~ATgd-- 249 (484)
T PLN02175 187 KVDSKYSRLLLATAKKVMQFAIQY-----RGAYSDSLSSSV------C----PFYCSYSGYKDELMWGASWLLRATND-- 249 (484)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhC-----CCCcccCccccc------c----CccccCCCccHHHHHHHHHHHHHhCC--
Confidence 444 588899998888662 344443211000 0 111221 22356666789999986
Q ss_pred chHHHHHHHH
Q 003940 709 SDYYRQNAEH 718 (784)
Q Consensus 709 ~~~y~e~A~~ 718 (784)
..|.+.+..
T Consensus 250 -~~Yl~~~~~ 258 (484)
T PLN02175 250 -PYYANFIKS 258 (484)
T ss_pred -HHHHHHHHH
Confidence 788876643
No 354
>PRK13270 treF trehalase; Provisional
Probab=25.19 E-value=2.5e+02 Score=33.71 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=36.1
Q ss_pred HHHHHH---HHHHHHHHcCCH----HHHHHHHHHHHHHHHhccccCCCcccccC
Q 003940 622 YAFLIS---GLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 668 (784)
Q Consensus 622 yA~li~---aLL~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (784)
+|+++. .|..+++..|++ .|.++|.+..+.+.+.+||++.|.||+..
T Consensus 352 NaiL~~~e~~LA~~a~~lG~~~~a~~~~~~A~~r~~AI~~~LWnee~G~~~DYD 405 (549)
T PRK13270 352 NAFLYKLESAIANISALKGEKETEALFRQKASARRDAVNRYLWDDENGIYRDYD 405 (549)
T ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhccCcccCeEEecc
Confidence 454443 445566777764 48889999999999999999999999864
No 355
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=25.05 E-value=3.2e+02 Score=30.09 Aligned_cols=98 Identities=14% Similarity=0.184 Sum_probs=57.6
Q ss_pred chHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEE---cCCCC--ccHHHHHHHHHHHhcC
Q 003940 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKV---DREER--PDVDKVYMTYVQALYG 200 (784)
Q Consensus 126 ~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~Vkv---D~ee~--pdi~~~y~~~~q~~~g 200 (784)
...+++++|.+.+.|.||++.. -|+...++. ..+.++++-+.+.- |...+ +++...+.++......
T Consensus 164 eL~~ai~~Al~~~GpslIeV~~-pC~t~n~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 234 (287)
T TIGR02177 164 HLKEIIKEAINHKGYALVDILQ-PCVTYNKIN--------TYEWYRERVYKLDEEGYDPIVREPEEFEEKAAAAIKKAME 234 (287)
T ss_pred HHHHHHHHHHhCCCCEEEEEeC-CCCCCCccc--------HHHHHHHhceeccccccCccccchhhhhhhHHHHHHHHHh
Confidence 4688999999999999999984 455553322 26778888888853 22222 2222333333222212
Q ss_pred -CCCCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHHHHhhc
Q 003940 201 -GGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKK 248 (784)
Q Consensus 201 -~~G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~ 248 (784)
.+.+|+=+|+..+.+ |.|-+.+.++.+.|.+.
T Consensus 235 ~~~~~~~g~~~~~~~~----------------~~~~~~~~~~~~~~~~~ 267 (287)
T TIGR02177 235 WGDRIPIGIFYKNENK----------------ETFEERLEKILPRYMSA 267 (287)
T ss_pred hcCCceEEEEEECCCC----------------CCHHHHHHHHHHhcccC
Confidence 456787777754322 34667666666665543
No 356
>KOG3760 consensus Heparan sulfate-glucuronic acid C5-epimerase [Carbohydrate transport and metabolism]
Probab=24.60 E-value=80 Score=35.99 Aligned_cols=81 Identities=20% Similarity=0.209 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeE---EEEecCCCC-CCCCCcc--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 003940 579 KEYMEVAESAASFIRRHLYDEQTHRL---QHSFRNGPS-KAPGFLD--DYAFLISGLLDLYEFGSGTKWLVWAIELQNTQ 652 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~~G~l---~~~~~dg~~-~~~~~le--DyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~ 652 (784)
...+.+=-.+++|+.++.-+ .+|.- -++..+|-. ..+|..+ .+.++|.-|.++|..++|++||..|.+-++-.
T Consensus 376 ~~H~aaFyaAadWlV~NQd~-kGGW~~pV~Rsl~egf~~L~PGW~SAMaQGhaISvL~RAy~h~~De~yL~sAa~al~py 454 (594)
T KOG3760|consen 376 EQHSAAFYAAADWLVKNQDD-KGGWSVPVERSLAEGFLVLPPGWHSAMAQGHAISVLTRAYKHFNDEKYLKSAAKALKPY 454 (594)
T ss_pred hHHHHHHHHHHHHHhhCCCC-CCCCcchhhhhhhcCccccCcchHhhhhcccchHHHHHHHHhcCcHHHHHHHHhhcCCe
Confidence 34455555678898888744 44421 111223322 1223333 34578999999999999999998887665443
Q ss_pred HHhccccCCC
Q 003940 653 DELFLDREGG 662 (784)
Q Consensus 653 ~~~F~D~~~G 662 (784)
+++..++|
T Consensus 455 --k~~S~dgG 462 (594)
T KOG3760|consen 455 --KINSSDGG 462 (594)
T ss_pred --EeecCCCc
Confidence 45555544
No 357
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins. Examination of Pbx1 has shown that, in addition to the homeodomain, a short 16-residue C-terminal tail is essential for maximal cooperative interactions with Hox partners as well as for maximal monomeric binding of Pbx1 to DNA. The PBX domain is a bipartite acidic domain [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=24.19 E-value=5.7e+02 Score=26.53 Aligned_cols=132 Identities=13% Similarity=0.178 Sum_probs=76.9
Q ss_pred hhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHH--HHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCC
Q 003940 152 WCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVD--KVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDK 228 (784)
Q Consensus 152 wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~--~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~~tY~p~~~~ 228 (784)
-||.|....|+ |-=-++ +..+.++---++.|.-. .+.-+.+.+ -|+.|. +++|.......--+++..
T Consensus 34 ~~hr~k~ALfs---VLcE~KEkt~LSir~~qee~p~dpQl~RLDNML~A-EGV~gP------e~~~~~~~~~~~~~~~~~ 103 (191)
T PF03792_consen 34 NCHRMKPALFS---VLCEIKEKTVLSIRNIQEEDPPDPQLMRLDNMLLA-EGVAGP------EKGGRAAAAAAGTAADNS 103 (191)
T ss_pred cCCCCchhhHH---HHHHHHhhcCccccccCCcCCCchhhhhhhcchhh-hcCcCC------CCcccchhhhhccCcccc
Confidence 48888775554 222222 34566655434433211 111111111 266665 444444332222234444
Q ss_pred CCcchHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhcc
Q 003940 229 YGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYD 297 (784)
Q Consensus 229 ~~~~~f~~~L~~i~~~~~~~~~~l~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D 297 (784)
....++..-|..|.+.|...=++..+...++.+.+.+.+.....-. +++...++.++..+.+-|+
T Consensus 104 ~d~~dYr~kL~~ir~~y~~el~kye~ac~eF~~hV~~lLreQs~~R----PIs~keiE~m~~~i~~Kf~ 168 (191)
T PF03792_consen 104 IDHSDYRAKLSQIRQIYHSELEKYEQACNEFTEHVMNLLREQSEFR----PISPKEIERMVNIIHRKFS 168 (191)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcccC----CCCHHHHHHHHHHHHHHHH
Confidence 4456899999999999999999999998888888888776532112 3455667777777776554
No 358
>KOG2429 consensus Glycosyl hydrolase, family 47 [Carbohydrate transport and metabolism]
Probab=23.38 E-value=3.9e+02 Score=32.04 Aligned_cols=166 Identities=13% Similarity=0.022 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEE-e-cCCCCCC---CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 003940 579 KEYMEVAESAASFIRRHLYDEQTHRLQHS-F-RNGPSKA---PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQD 653 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~~G~l~~~-~-~dg~~~~---~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~ 653 (784)
.+.|..|+++|+.++-.|.- .+|.=|-+ . ..|-... .--...-+-++.=+--|-..|||++|-+.|+..++.++
T Consensus 151 g~LLrLA~dlA~RLLPAF~T-~TGiPy~~vNLk~GV~~~Et~~tctAg~gslllEFg~LSrLTGD~~fE~vA~~A~~~lW 229 (622)
T KOG2429|consen 151 GELLRLAEDLARRLLPAFET-PTGIPYGRVNLKYGVDKGETTETCTAGAGSLLLEFGTLSRLTGDPKFEKVARRALDALW 229 (622)
T ss_pred chHHHHHHHHHHhhcccccC-CCCCCcceeehhcCCCCCCCcceecccccceeeehhhhHHhhCCcHHHHHHHHHHHHHH
Confidence 46899999999999988864 45643222 1 2231110 00111122333345567889999999999998887766
Q ss_pred HhccccCCC-cccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhhh
Q 003940 654 ELFLDREGG-GYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAM 732 (784)
Q Consensus 654 ~~F~D~~~G-gyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~~p~ 732 (784)
.. .+| |..- ..-++..-.+-..|..+-.|--..-+-|++-+-+.|+ ++|.+.-.+..++....+++-|+
T Consensus 230 ~~----RS~igLlG---n~idV~tG~W~~~~sGIGAgiDSfyEYllK~yILfgd---~e~lemf~ea~~ai~~y~r~~~w 299 (622)
T KOG2429|consen 230 SL----RSGIGLLG---NHIDVQTGEWTAPDSGIGAGIDSFYEYLLKGYILFGD---PELLEMFNEAYEAIQKYTRKGPW 299 (622)
T ss_pred hh----cCCCCccc---ceeeccccceeccccccccchHHHHHHHHHHheecCC---HHHHHHHHHHHHHHHHHhhcCCe
Confidence 54 111 1111 1111111122222444444444577788899999986 78999888888888777776554
Q ss_pred h----------HHHHHHHHHHhcCCCceEEEEEcCC
Q 003940 733 A----------VPLMCCAADMLSVPSRKHVVLVGHK 758 (784)
Q Consensus 733 ~----------~~~~~~a~~~~~~~~~~~~~i~g~~ 758 (784)
- .--|+..+..+ .| ...|++|+-
T Consensus 300 Y~~V~m~~G~v~~p~~dSLqAf-wp--GlqvLaGDv 332 (622)
T KOG2429|consen 300 YVNVNMDSGSVSLPWFDSLQAF-WP--GLQVLAGDV 332 (622)
T ss_pred EEEEecCCCceehHHHhhHHhh-cc--chhhhhcch
Confidence 2 12345555544 23 355888965
No 359
>PRK05949 RNA polymerase sigma factor; Validated
Probab=23.17 E-value=2.3e+02 Score=31.63 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=36.7
Q ss_pred hHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 003940 460 HAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 527 (784)
Q Consensus 460 ~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~ 527 (784)
+..++.-.||+.... + .+..++++.+|++.+.+++++..++++|.+
T Consensus 271 er~Vi~lr~gl~~~e---------------~-------~Tl~EIa~~lgiS~erVrq~~~rAl~kLr~ 316 (327)
T PRK05949 271 QREVLTLRFGLEDGK---------------E-------LSLAKVGERLNLSRERVRQLEHQALAHLRR 316 (327)
T ss_pred HHHHHHHHhccCCCC---------------C-------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 456778888885322 1 235789999999999999999999999976
No 360
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=23.17 E-value=1.2e+02 Score=28.33 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=32.0
Q ss_pred EEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003940 144 SIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (784)
Q Consensus 144 ~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~p 216 (784)
.++.++|+.|++..+ +|++ +.-...+|..+.|.-...+.+.+..+ |-..--+++..|+.
T Consensus 3 iY~~~~C~~c~ka~~----------~L~~~~i~~~~idi~~~~~~~~el~~l~~~~----~~~~~~lin~~~~~ 62 (117)
T TIGR01617 3 VYGSPNCTTCKKARR----------WLEANGIEYQFIDIGEDGPTREELLDILSLL----EDGIDPLLNTRGQS 62 (117)
T ss_pred EEeCCCCHHHHHHHH----------HHHHcCCceEEEecCCChhhHHHHHHHHHHc----CCCHHHheeCCCcc
Confidence 468999999998653 3443 23344556655555444443433332 43334445665554
No 361
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=22.99 E-value=1.6e+02 Score=31.60 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=16.9
Q ss_pred hhcCCcEEEEEcccCChhhh
Q 003940 135 RKRDVPIFLSIGYSTCHWCH 154 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~ 154 (784)
.+.++|++|.||+-+|+.=.
T Consensus 99 ~~g~RPLVlnFGS~TCPpF~ 118 (237)
T PF00837_consen 99 AKGNRPLVLNFGSCTCPPFM 118 (237)
T ss_pred ccCCCCeEEEcccccchHHH
Confidence 35699999999999998754
No 362
>PRK07405 RNA polymerase sigma factor SigD; Validated
Probab=22.87 E-value=2.3e+02 Score=31.36 Aligned_cols=29 Identities=21% Similarity=0.179 Sum_probs=26.6
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 003940 499 DSSASASKLGMPLEKYLNILGECRRKLFD 527 (784)
Q Consensus 499 ~~~~~a~~~g~~~~~l~~~l~~~r~kL~~ 527 (784)
+.+++++.+|++.+.++++...++.+|.+
T Consensus 278 Tl~EIa~~lgiS~erVRqi~~rAl~kLr~ 306 (317)
T PRK07405 278 TLAKIGERLNISRERVRQIEREALSKLRK 306 (317)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999999986
No 363
>PRK07921 RNA polymerase sigma factor SigB; Reviewed
Probab=22.84 E-value=2.3e+02 Score=31.56 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=39.1
Q ss_pred HHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 003940 453 VEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 527 (784)
Q Consensus 453 i~~~Lg----~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~ 527 (784)
+.+++. .+..++..+||+..+.. .+..++++.+|++.+.+.++-..+..||..
T Consensus 256 l~~~L~~L~eREr~Vl~~rygl~~~~~----------------------~Tl~eIa~~lgvS~eRVrQIe~~Al~KLr~ 312 (324)
T PRK07921 256 IRSVLATLDEREQQVIRLRFGLDDGQP----------------------RTLDQIGKLFGLSRERVRQIEREVMSKLRN 312 (324)
T ss_pred HHHHHHhCCHHHHHHHHHHHhcCCCCC----------------------cCHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 445544 24567778899853211 235789999999999999999999999975
No 364
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=22.82 E-value=1.3e+02 Score=31.35 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=52.1
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcc---cEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~---FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~ 204 (784)
.+.++.-++..| |++.||-+.-.-|+.|++- .+.|.+. --.||||++.-|-+...+ ++.-.
T Consensus 75 kdf~~~~~kS~k-VVcHFY~~~f~RCKimDkh-------Le~LAk~h~eTrFikvnae~~PFlv~kL--------~IkVL 138 (211)
T KOG1672|consen 75 KDFFEEVKKSEK-VVCHFYRPEFFRCKIMDKH-------LEILAKRHVETRFIKVNAEKAPFLVTKL--------NIKVL 138 (211)
T ss_pred HHHHHHhhcCce-EEEEEEcCCCcceehHHHH-------HHHHHHhcccceEEEEecccCceeeeee--------eeeEe
Confidence 456666665544 7789999999999999861 2233332 346789999999887654 67789
Q ss_pred CcEEEECCCCcee
Q 003940 205 PLSVFLSPDLKPL 217 (784)
Q Consensus 205 P~~vfl~pdg~pi 217 (784)
|+.+++ .+|+..
T Consensus 139 P~v~l~-k~g~~~ 150 (211)
T KOG1672|consen 139 PTVALF-KNGKTV 150 (211)
T ss_pred eeEEEE-EcCEEE
Confidence 999987 556544
No 365
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=22.74 E-value=1.5e+02 Score=24.50 Aligned_cols=59 Identities=17% Similarity=0.224 Sum_probs=31.7
Q ss_pred EEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 144 SIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 144 ~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
-+++++|+.|++..- +....+-.|-.+.+|..+... .. ...+.+..|+.+ +++|..+..
T Consensus 3 Ly~~~~~p~~~rvr~-------~L~~~gl~~~~~~~~~~~~~~---~~-----~~~~~~~vP~L~--~~~~~~l~e 61 (71)
T cd03037 3 LYIYEHCPFCVKARM-------IAGLKNIPVEQIILQNDDEAT---PI-----RMIGAKQVPILE--KDDGSFMAE 61 (71)
T ss_pred eEecCCCcHhHHHHH-------HHHHcCCCeEEEECCCCchHH---HH-----HhcCCCccCEEE--eCCCeEeeh
Confidence 356889999997642 222233346666666432211 11 123556688864 345666554
No 366
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=21.34 E-value=1.3e+02 Score=23.78 Aligned_cols=26 Identities=27% Similarity=0.285 Sum_probs=22.2
Q ss_pred chHHHHhcCCCHHHHHHHHHHHHHHH
Q 003940 500 SSASASKLGMPLEKYLNILGECRRKL 525 (784)
Q Consensus 500 ~~~~a~~~g~~~~~l~~~l~~~r~kL 525 (784)
..++|+.+|+++..+...+..++++|
T Consensus 29 ~~eIa~~l~~s~~~v~~~l~ra~~~L 54 (54)
T PF08281_consen 29 YAEIAEILGISESTVKRRLRRARKKL 54 (54)
T ss_dssp HHHHHHHCTS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhhC
Confidence 46899999999999999999998876
No 367
>PHA02881 hypothetical protein; Provisional
Probab=20.93 E-value=60 Score=30.98 Aligned_cols=58 Identities=19% Similarity=0.294 Sum_probs=41.8
Q ss_pred cEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003940 140 PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (784)
Q Consensus 140 pI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~p 212 (784)
-+.|.+++--=+.|.-|+..+++=.-.-...+=-||.+|+++-+.|.+ ..|.++|+.|
T Consensus 102 d~~v~ital~pp~cn~mdakvln~nl~~pecdcffid~klnia~~~~~---------------n~~~ylfvs~ 159 (161)
T PHA02881 102 DIIVHITALFPPCCNFMDAKVLNFNLLFPECDCFFIDAKLNIAEEPNF---------------NILQYLFVSP 159 (161)
T ss_pred eeEEEEeeecCccccchhhheeeeeeccCcCCEEEEeeeeccccCCCC---------------CceeEEEecc
Confidence 356778887778899999877764333333444699999999888775 3778888876
No 368
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=20.50 E-value=1.6e+02 Score=24.22 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.8
Q ss_pred CchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 003940 499 DSSASASKLGMPLEKYLNILGECRRKLF 526 (784)
Q Consensus 499 ~~~~~a~~~g~~~~~l~~~l~~~r~kL~ 526 (784)
+..++|+.+|++...+.+.|..+-.||.
T Consensus 25 tl~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 25 TLEELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 4578999999999999999999988875
No 369
>TIGR02997 Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family. This family includes a number of closely related sigma-70 (TIGR02937) factors in the cyanobacteria. All appear most closely related to the essential sigma-70 factor RpoD, and some score above trusted to the RpoD C-terminal domain model (TIGR02393).
Probab=20.46 E-value=2.2e+02 Score=31.02 Aligned_cols=51 Identities=18% Similarity=0.248 Sum_probs=37.8
Q ss_pred HHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHH
Q 003940 453 VEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKL 525 (784)
Q Consensus 453 i~~~Lg----~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL 525 (784)
+.+++. .+..++...||+... ++ .+.+++|+.+|++.+.+++.+..++.+|
T Consensus 243 L~~~L~~L~~rer~Vi~lr~gl~~~---------------~~-------~Tl~EIa~~lgiS~erVrq~~~rAl~kL 297 (298)
T TIGR02997 243 LESLLAELTPRERQVLRLRFGLDGG---------------EP-------LTLAEIGRRLNLSRERVRQIEAKALRKL 297 (298)
T ss_pred HHHHHHcCCHHHHHHHHHHhccCCC---------------CC-------cCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 555543 345678888888522 12 2457899999999999999999999887
No 370
>PLN02710 farnesyltranstransferase subunit beta
Probab=20.03 E-value=9.6e+02 Score=28.12 Aligned_cols=116 Identities=17% Similarity=0.175 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhhccccCCCCCCCCCCCC--hhHHHHHHHhhhhccccCCCCCcHHH----HHHHHHHHHHHHcCCC
Q 003940 280 LPQNALRLCAEQLSKSYDSRFGGFGSAPKFPR--PVEIQMMLYHSKKLEDTGKSGEASEG----QKMVLFTLQCMAKGGI 353 (784)
Q Consensus 280 ~~~~~l~~~~~~l~~~~D~~~GGfg~aPKFP~--p~~l~~Ll~~~~~~~~~~~~~~~~~~----~~~~~~TL~~m~~GGi 353 (784)
++...-+.+++.+.+--++. ||||+.|--+. ...+..++-......+ +.. ++-+..-|..+..
T Consensus 89 l~~~~~~~ii~~l~~cQ~~d-GGFgg~pg~~~hl~~TY~Av~~L~iLg~~-------~~l~~Idr~~l~~fl~s~q~--- 157 (439)
T PLN02710 89 LDDELENDTIDFLSRCQDPN-GGYGGGPGQLPHLATTYAAVNTLVTIGGE-------RALSSINREKLYTFLLRMKD--- 157 (439)
T ss_pred ccHHHHHHHHHHHHHhcCCC-cCCCCCCCCCccHHHHHHHHHHHHHcCCc-------hhhcccCHHHHHHHHHHcCC---
Q ss_pred cccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCce
Q 003940 354 HDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEI 423 (784)
Q Consensus 354 ~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggf 423 (784)
-.|||.- ..|.-+|. ...| .+.+-+.......+. ...++++||.+ .+..+|||
T Consensus 158 ---~dGgF~~----~~~gE~D~-R~tY----cAlail~LL~~l~~~----~~e~~~~~I~s-cQ~~dGGF 210 (439)
T PLN02710 158 ---PSGGFRM----HDGGEMDV-RACY----TAISVASLLNILDDE----LVKGVGDYILS-CQTYEGGI 210 (439)
T ss_pred ---CCCCccc----CCCCCCCc-CCcH----HHHHHHHHhCcCchh----hHHHHHHHHHH-hCCCCCCC
Done!