Query 003940
Match_columns 784
No_of_seqs 387 out of 1867
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:57:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003940.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003940hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ira_A Conserved protein; meth 100.0 4.2E-45 1.4E-49 363.2 17.2 168 101-268 2-169 (173)
2 1fp3_A N-acyl-D-glucosamine 2- 100.0 1.5E-33 5.3E-38 312.9 23.0 335 285-698 19-391 (402)
3 2gz6_A N-acetyl-D-glucosamine 100.0 1.2E-33 4E-38 311.7 21.4 251 346-726 21-273 (388)
4 2zbl_A Putative isomerase; N-a 100.0 9.1E-31 3.1E-35 293.4 22.9 303 288-730 20-355 (421)
5 3gt5_A N-acetylglucosamine 2-e 99.9 1.3E-26 4.4E-31 258.3 19.9 339 339-699 13-388 (402)
6 1fp3_A N-acyl-D-glucosamine 2- 99.9 4.7E-24 1.6E-28 236.7 24.2 307 341-729 19-352 (402)
7 2dlx_A UBX domain-containing p 99.9 9.5E-24 3.3E-28 205.6 13.4 126 100-244 10-137 (153)
8 2zbl_A Putative isomerase; N-a 99.9 1.4E-21 4.6E-26 219.0 22.0 249 353-727 27-289 (421)
9 2gz6_A N-acetyl-D-glucosamine 99.9 7.2E-21 2.5E-25 209.6 23.7 293 334-698 72-381 (388)
10 2zzr_A Unsaturated glucuronyl 99.9 1.7E-20 5.6E-25 208.3 21.0 253 317-727 76-346 (397)
11 3ph9_A Anterior gradient prote 99.8 5.4E-20 1.8E-24 178.8 11.3 122 118-248 24-147 (151)
12 3gt5_A N-acetylglucosamine 2-e 99.8 2.4E-19 8.3E-24 199.6 16.9 158 545-729 53-211 (402)
13 2ahf_A Unsaturated glucuronyl 99.8 5.4E-19 1.8E-23 195.3 19.1 154 547-727 151-321 (377)
14 3k7x_A LIN0763 protein; Q92DQ0 99.7 5.2E-16 1.8E-20 170.0 27.5 243 314-724 51-299 (349)
15 3f9u_A Putative exported cytoc 99.7 1.2E-17 3.9E-22 163.0 12.2 126 117-247 26-170 (172)
16 2ju5_A Thioredoxin disulfide i 99.7 1.2E-17 4.2E-22 161.1 10.1 138 98-241 8-150 (154)
17 3fk8_A Disulphide isomerase; A 99.5 1.1E-14 3.6E-19 135.6 8.9 113 121-242 12-132 (133)
18 2lst_A Thioredoxin; structural 99.2 2.9E-15 9.9E-20 138.7 0.0 107 120-241 2-114 (130)
19 2kuc_A Putative disulphide-iso 99.4 1.9E-13 6.5E-18 126.2 9.9 92 120-219 8-102 (130)
20 3h7l_A Endoglucanase; dehydrog 99.4 1E-12 3.5E-17 151.6 18.0 148 544-725 250-397 (586)
21 3k7x_A LIN0763 protein; Q92DQ0 99.4 4.8E-12 1.6E-16 138.6 21.0 152 547-727 95-249 (349)
22 2fwh_A Thiol:disulfide interch 99.4 6.7E-13 2.3E-17 124.4 7.1 109 121-242 16-127 (134)
23 2ahf_A Unsaturated glucuronyl 99.4 3.5E-11 1.2E-15 133.0 21.5 253 334-704 106-368 (377)
24 2zzr_A Unsaturated glucuronyl 99.3 2.4E-11 8.1E-16 135.0 18.9 211 334-658 132-348 (397)
25 1sen_A Thioredoxin-like protei 99.3 1.1E-11 3.8E-16 120.8 10.7 91 118-219 27-119 (164)
26 3pmm_A Putative cytoplasmic pr 99.3 3.9E-11 1.3E-15 132.9 16.0 177 507-728 20-207 (382)
27 3dml_A Putative uncharacterize 99.2 2.4E-12 8.2E-17 119.6 4.1 91 138-244 18-111 (116)
28 2ec4_A FAS-associated factor 1 99.2 1.8E-11 6.3E-16 121.8 8.8 119 122-247 34-172 (178)
29 3k11_A Putative glycosyl hydro 99.2 5E-11 1.7E-15 134.0 11.7 202 491-727 10-240 (445)
30 1ep7_A Thioredoxin CH1, H-type 99.2 4.9E-11 1.7E-15 106.7 8.6 87 121-219 7-93 (112)
31 1ti3_A Thioredoxin H, PTTRXH1; 99.1 1.2E-10 4E-15 104.2 8.9 103 121-242 9-111 (113)
32 3gnj_A Thioredoxin domain prot 99.1 1.6E-10 5.6E-15 102.9 9.8 83 125-219 8-91 (111)
33 2l57_A Uncharacterized protein 99.1 4.6E-11 1.6E-15 109.9 6.3 76 133-219 21-98 (126)
34 3zzx_A Thioredoxin; oxidoreduc 99.1 7E-11 2.4E-15 107.1 7.2 77 128-219 12-88 (105)
35 3f3q_A Thioredoxin-1; His TAG, 99.1 1.7E-10 5.9E-15 103.9 9.1 79 128-219 14-92 (109)
36 1w4v_A Thioredoxin, mitochondr 99.1 1.3E-10 4.5E-15 106.2 8.5 80 128-219 20-100 (119)
37 3hxs_A Thioredoxin, TRXP; elec 99.1 1.3E-10 4.5E-15 108.7 8.5 77 137-224 50-126 (141)
38 1nc5_A Hypothetical protein YT 99.1 3.4E-09 1.2E-13 116.8 21.2 258 310-726 42-314 (373)
39 1nc5_A Hypothetical protein YT 99.1 2.1E-10 7.1E-15 126.5 11.5 142 542-728 36-180 (373)
40 1nsw_A Thioredoxin, TRX; therm 99.1 4.4E-11 1.5E-15 105.8 4.9 79 129-219 8-86 (105)
41 2l5l_A Thioredoxin; structural 99.1 1.3E-10 4.4E-15 108.9 8.0 72 136-218 36-107 (136)
42 3tco_A Thioredoxin (TRXA-1); d 99.1 1.1E-10 3.7E-15 103.4 6.7 80 128-219 11-90 (109)
43 1dby_A Chloroplast thioredoxin 99.1 2.9E-10 9.9E-15 100.8 9.4 80 128-219 8-88 (107)
44 1xfl_A Thioredoxin H1; AT3G510 99.1 1.6E-10 5.5E-15 106.9 7.8 86 121-219 21-106 (124)
45 3qfa_C Thioredoxin; protein-pr 99.1 2.1E-10 7.2E-15 104.6 8.3 79 128-219 19-99 (116)
46 2voc_A Thioredoxin; electron t 99.1 1.5E-10 5.1E-15 104.5 6.8 77 130-219 10-86 (112)
47 2vm1_A Thioredoxin, thioredoxi 99.1 2.1E-10 7.3E-15 103.3 7.7 86 121-219 11-96 (118)
48 2trx_A Thioredoxin; electron t 99.1 2.2E-10 7.7E-15 101.7 7.8 74 134-219 16-89 (108)
49 3d22_A TRXH4, thioredoxin H-ty 99.0 2.2E-10 7.7E-15 107.0 7.4 86 121-219 29-114 (139)
50 1syr_A Thioredoxin; SGPP, stru 99.0 2.6E-10 8.9E-15 102.8 7.1 91 116-219 4-94 (112)
51 2dml_A Protein disulfide-isome 99.0 5.8E-10 2E-14 102.7 9.6 73 134-217 31-103 (130)
52 2av4_A Thioredoxin-like protei 99.0 2.6E-10 8.8E-15 111.0 7.5 78 128-217 29-108 (160)
53 2vlu_A Thioredoxin, thioredoxi 99.0 4.5E-10 1.5E-14 102.3 8.7 80 127-219 23-102 (122)
54 1wmj_A Thioredoxin H-type; str 99.0 2E-10 7E-15 105.4 6.3 86 121-219 19-104 (130)
55 1oaz_A Thioredoxin 1; immune s 99.0 6.7E-11 2.3E-15 109.6 2.8 78 133-219 16-104 (123)
56 3hz4_A Thioredoxin; NYSGXRC, P 99.0 4.9E-10 1.7E-14 105.5 8.8 80 128-219 13-93 (140)
57 2i4a_A Thioredoxin; acidophIle 99.0 3.7E-10 1.3E-14 99.7 7.4 73 135-219 17-89 (107)
58 2yzu_A Thioredoxin; redox prot 99.0 3.3E-10 1.1E-14 100.0 6.8 79 129-219 9-87 (109)
59 3ul3_B Thioredoxin, thioredoxi 99.0 2.1E-10 7.3E-15 106.1 5.7 78 130-219 34-111 (128)
60 1fb6_A Thioredoxin M; electron 99.0 5.3E-10 1.8E-14 98.4 7.5 89 134-240 14-103 (105)
61 1t00_A Thioredoxin, TRX; redox 99.0 4.1E-10 1.4E-14 100.8 6.8 76 132-219 17-92 (112)
62 3d6i_A Monothiol glutaredoxin- 99.0 7.7E-10 2.6E-14 99.2 8.5 72 136-219 19-91 (112)
63 3k11_A Putative glycosyl hydro 99.0 3.9E-09 1.3E-13 118.8 16.1 218 374-725 76-305 (445)
64 4euy_A Uncharacterized protein 99.0 1E-10 3.4E-15 104.3 2.3 77 130-219 10-86 (105)
65 3aps_A DNAJ homolog subfamily 99.0 5.9E-10 2E-14 101.5 7.4 78 128-216 10-88 (122)
66 2f51_A Thioredoxin; electron t 99.0 6E-10 2E-14 102.0 7.5 80 128-219 12-95 (118)
67 3die_A Thioredoxin, TRX; elect 99.0 4E-10 1.4E-14 99.3 6.1 78 129-219 11-88 (106)
68 1gh2_A Thioredoxin-like protei 99.0 1E-09 3.4E-14 97.8 8.7 71 136-219 19-89 (107)
69 1x5d_A Protein disulfide-isome 99.0 1.3E-09 4.5E-14 100.3 9.8 73 134-218 21-97 (133)
70 2dj1_A Protein disulfide-isome 99.0 9.5E-10 3.2E-14 102.5 8.6 77 128-216 24-103 (140)
71 3pmm_A Putative cytoplasmic pr 99.0 5E-08 1.7E-12 108.0 23.7 289 334-729 24-335 (382)
72 3m9j_A Thioredoxin; oxidoreduc 99.0 1E-09 3.5E-14 96.7 8.2 70 137-219 19-88 (105)
73 2o8v_B Thioredoxin 1; disulfid 99.0 5.1E-10 1.7E-14 104.2 6.4 73 135-219 37-109 (128)
74 3gix_A Thioredoxin-like protei 99.0 7.7E-10 2.6E-14 106.1 7.8 78 128-217 11-90 (149)
75 3p2a_A Thioredoxin 2, putative 99.0 1.1E-09 3.8E-14 103.7 8.6 80 128-219 45-124 (148)
76 2ppt_A Thioredoxin-2; thiredox 99.0 1.2E-09 4.2E-14 105.2 9.1 80 128-219 54-133 (155)
77 2j23_A Thioredoxin; immune pro 99.0 8.3E-10 2.8E-14 101.2 7.2 80 128-219 23-103 (121)
78 2oe3_A Thioredoxin-3; electron 99.0 7.2E-10 2.5E-14 101.0 6.6 79 128-219 20-98 (114)
79 2e0q_A Thioredoxin; electron t 99.0 7.5E-10 2.6E-14 96.7 6.4 78 129-219 7-84 (104)
80 1r26_A Thioredoxin; redox-acti 98.9 1.6E-09 5.3E-14 100.7 8.8 78 129-219 28-105 (125)
81 1xwb_A Thioredoxin; dimerizati 98.9 1.4E-09 4.8E-14 95.8 7.9 71 137-219 19-89 (106)
82 1thx_A Thioredoxin, thioredoxi 98.9 1.2E-09 4.1E-14 97.7 7.6 73 135-219 22-94 (115)
83 2wz9_A Glutaredoxin-3; protein 98.9 1.4E-09 4.8E-14 104.1 8.3 79 128-219 20-100 (153)
84 2i1u_A Thioredoxin, TRX, MPT46 98.9 6.7E-10 2.3E-14 100.6 5.1 77 131-219 23-99 (121)
85 2vim_A Thioredoxin, TRX; thior 98.9 2.9E-09 1E-13 93.4 8.7 78 129-219 8-87 (104)
86 1qgv_A Spliceosomal protein U5 98.9 2.2E-09 7.7E-14 102.0 7.9 79 128-218 11-91 (142)
87 2xc2_A Thioredoxinn; oxidoredu 98.9 3E-09 1E-13 96.3 8.0 69 136-219 31-100 (117)
88 1mek_A Protein disulfide isome 98.9 9E-10 3.1E-14 98.9 4.4 77 129-217 15-94 (120)
89 3apq_A DNAJ homolog subfamily 98.9 4.5E-09 1.5E-13 105.8 9.5 80 128-219 104-183 (210)
90 2dj3_A Protein disulfide-isome 98.9 2.6E-09 9E-14 98.6 7.1 69 136-215 23-93 (133)
91 2pu9_C TRX-F, thioredoxin F-ty 98.9 5.3E-09 1.8E-13 93.6 8.6 70 137-219 23-93 (111)
92 3qou_A Protein YBBN; thioredox 98.9 4E-09 1.4E-13 110.7 8.9 72 136-219 24-95 (287)
93 3cxg_A Putative thioredoxin; m 98.9 1.8E-09 6.3E-14 101.1 5.6 76 128-219 32-111 (133)
94 2l6c_A Thioredoxin; oxidoreduc 98.8 1.7E-09 5.7E-14 97.5 4.9 80 133-225 14-94 (110)
95 3dxb_A Thioredoxin N-terminall 98.8 4.8E-09 1.6E-13 106.7 7.0 80 128-219 19-99 (222)
96 1zma_A Bacterocin transport ac 98.8 1.9E-09 6.4E-14 98.0 3.5 85 127-219 18-102 (118)
97 2dj0_A Thioredoxin-related tra 98.8 1.4E-08 5E-13 94.8 9.4 81 134-226 22-110 (137)
98 1faa_A Thioredoxin F; electron 98.8 1.1E-08 3.9E-13 93.3 8.4 71 136-219 35-106 (124)
99 2yj7_A LPBCA thioredoxin; oxid 98.3 7.4E-10 2.5E-14 97.0 0.0 75 133-219 14-88 (106)
100 3uvt_A Thioredoxin domain-cont 98.8 1.5E-08 5E-13 90.0 8.4 67 138-219 21-93 (111)
101 3h79_A Thioredoxin-like protei 98.8 1.2E-08 4.1E-13 94.0 8.1 69 136-215 31-104 (127)
102 2qsi_A Putative hydrogenase ex 98.8 5.1E-09 1.7E-13 99.8 5.5 95 119-225 13-111 (137)
103 3hcz_A Possible thiol-disulfid 98.7 1.3E-08 4.3E-13 94.8 7.7 100 135-245 28-145 (148)
104 2qgv_A Hydrogenase-1 operon pr 98.7 3.7E-09 1.3E-13 101.1 3.8 101 110-224 8-112 (140)
105 1v98_A Thioredoxin; oxidoreduc 98.7 1.3E-08 4.6E-13 95.3 7.1 80 128-219 40-119 (140)
106 1x5e_A Thioredoxin domain cont 98.7 1.7E-08 5.8E-13 92.5 7.1 66 140-217 24-90 (126)
107 2djj_A PDI, protein disulfide- 98.7 1.8E-08 6.1E-13 91.3 7.2 67 135-215 22-93 (121)
108 1z6n_A Hypothetical protein PA 98.7 1.8E-08 6.2E-13 99.0 6.7 95 136-246 52-146 (167)
109 2b5x_A YKUV protein, TRXY; thi 98.7 4.6E-08 1.6E-12 90.7 9.0 85 132-219 23-126 (148)
110 4evm_A Thioredoxin family prot 98.7 2E-08 6.7E-13 91.4 6.1 82 135-219 19-120 (138)
111 2b1k_A Thiol:disulfide interch 98.7 2.6E-08 8.7E-13 95.7 7.3 96 136-243 49-160 (168)
112 3ewl_A Uncharacterized conserv 98.7 1.8E-08 6.1E-13 93.7 6.0 84 136-219 25-125 (142)
113 3or5_A Thiol:disulfide interch 98.7 4.7E-08 1.6E-12 92.9 8.6 82 135-219 31-132 (165)
114 1fo5_A Thioredoxin; disulfide 98.6 2.3E-08 7.9E-13 84.6 5.6 64 139-216 3-66 (85)
115 3idv_A Protein disulfide-isome 98.6 2.6E-08 8.9E-13 101.0 7.0 79 128-218 22-103 (241)
116 3emx_A Thioredoxin; structural 98.6 1.6E-08 5.5E-13 94.6 5.0 87 128-224 23-113 (135)
117 1lu4_A Soluble secreted antige 98.6 4.2E-08 1.4E-12 89.9 7.3 80 134-217 20-113 (136)
118 1wou_A Thioredoxin -related pr 98.6 4.8E-08 1.7E-12 89.9 7.5 79 129-219 13-107 (123)
119 1nho_A Probable thioredoxin; b 98.6 3.3E-08 1.1E-12 83.6 5.9 63 140-216 3-65 (85)
120 2lja_A Putative thiol-disulfid 98.6 8.8E-08 3E-12 89.9 9.3 82 136-220 28-125 (152)
121 3raz_A Thioredoxin-related pro 98.6 4.6E-08 1.6E-12 92.4 7.2 82 134-219 20-121 (151)
122 1a8l_A Protein disulfide oxido 98.6 6.4E-08 2.2E-12 97.6 8.0 81 127-219 122-207 (226)
123 2f9s_A Thiol-disulfide oxidore 98.6 1.2E-07 4.2E-12 89.1 9.2 82 135-219 23-119 (151)
124 3erw_A Sporulation thiol-disul 98.6 4.4E-08 1.5E-12 90.6 5.8 80 137-219 33-130 (145)
125 1zzo_A RV1677; thioredoxin fol 98.6 9.5E-08 3.2E-12 87.1 7.9 80 134-217 21-115 (136)
126 3gl3_A Putative thiol:disulfid 98.6 1.5E-07 5E-12 88.4 9.2 88 134-224 24-127 (152)
127 2lrn_A Thiol:disulfide interch 98.6 2.5E-07 8.6E-12 87.3 10.8 80 137-219 28-125 (152)
128 3hdc_A Thioredoxin family prot 98.6 1.5E-07 5E-12 89.7 8.9 82 134-226 37-139 (158)
129 3kcm_A Thioredoxin family prot 98.5 1.7E-07 5.7E-12 88.2 8.9 102 134-242 24-142 (154)
130 3kh7_A Thiol:disulfide interch 98.5 1.5E-07 5E-12 92.1 8.5 99 133-243 53-167 (176)
131 3fkf_A Thiol-disulfide oxidore 98.5 1.4E-07 4.7E-12 87.7 7.6 81 137-220 32-131 (148)
132 2h30_A Thioredoxin, peptide me 98.5 2.9E-08 1E-12 94.4 3.0 73 133-219 33-137 (164)
133 3kp8_A Vkorc1/thioredoxin doma 98.5 4.6E-08 1.6E-12 88.7 3.7 73 128-218 2-78 (106)
134 1kng_A Thiol:disulfide interch 98.5 3.5E-07 1.2E-11 86.0 9.8 81 133-219 37-133 (156)
135 3eyt_A Uncharacterized protein 98.5 2.8E-07 9.6E-12 87.1 8.5 83 134-219 24-133 (158)
136 3eur_A Uncharacterized protein 98.5 1.6E-07 5.6E-12 87.6 6.7 84 137-220 30-130 (142)
137 3s9f_A Tryparedoxin; thioredox 98.5 2.4E-07 8.2E-12 89.7 7.8 84 133-219 43-145 (165)
138 3lor_A Thiol-disulfide isomera 98.5 2.1E-07 7E-12 88.1 7.2 84 133-219 25-136 (160)
139 1i5g_A Tryparedoxin II; electr 98.5 4.6E-07 1.6E-11 84.6 9.4 82 134-219 24-125 (144)
140 2dbc_A PDCL2, unnamed protein 98.5 1.7E-07 5.9E-12 87.9 6.3 67 137-219 29-95 (135)
141 2ls5_A Uncharacterized protein 97.8 2.4E-08 8.1E-13 95.0 0.0 108 129-244 24-149 (159)
142 3q6o_A Sulfhydryl oxidase 1; p 98.4 3.4E-07 1.2E-11 94.0 8.7 70 134-214 26-100 (244)
143 3idv_A Protein disulfide-isome 98.4 2.5E-07 8.6E-12 93.7 7.6 78 129-218 138-218 (241)
144 3ha9_A Uncharacterized thiored 98.4 3.1E-07 1.1E-11 87.7 7.6 84 135-223 34-149 (165)
145 1o73_A Tryparedoxin; electron 98.4 3.9E-07 1.3E-11 84.8 7.7 82 134-219 24-125 (144)
146 1o8x_A Tryparedoxin, TRYX, TXN 98.4 7.5E-07 2.6E-11 83.5 9.5 82 134-219 24-125 (146)
147 2es7_A Q8ZP25_salty, putative 98.4 4.5E-08 1.5E-12 93.5 0.9 78 129-219 25-106 (142)
148 3ed3_A Protein disulfide-isome 98.4 6.2E-07 2.1E-11 95.7 9.7 85 119-214 15-102 (298)
149 3lwa_A Secreted thiol-disulfid 98.4 4.4E-07 1.5E-11 88.5 7.9 84 133-219 54-162 (183)
150 2l5o_A Putative thioredoxin; s 98.4 8.6E-07 2.9E-11 83.2 9.4 80 136-219 26-122 (153)
151 1ilo_A Conserved hypothetical 98.4 3.6E-07 1.2E-11 76.1 6.1 65 141-223 2-66 (77)
152 1sji_A Calsequestrin 2, calseq 98.4 3.7E-07 1.3E-11 99.0 7.3 78 128-217 18-102 (350)
153 3h7l_A Endoglucanase; dehydrog 98.4 8E-06 2.8E-10 94.5 18.7 184 335-654 190-397 (586)
154 2lrt_A Uncharacterized protein 98.4 8.7E-07 3E-11 84.2 8.7 80 137-219 34-129 (152)
155 2r2j_A Thioredoxin domain-cont 98.3 5.1E-07 1.8E-11 99.2 7.8 75 131-217 15-95 (382)
156 2ywm_A Glutaredoxin-like prote 98.3 6.4E-07 2.2E-11 90.6 7.7 75 127-216 124-199 (229)
157 2lus_A Thioredoxion; CR-Trp16, 97.7 6.9E-08 2.4E-12 89.5 0.0 83 136-221 23-126 (143)
158 3ia1_A THIO-disulfide isomeras 98.3 3.9E-07 1.3E-11 85.8 5.1 78 139-219 31-125 (154)
159 3iv4_A Putative oxidoreductase 98.3 1E-06 3.5E-11 81.1 7.0 78 128-219 14-96 (112)
160 3f8u_A Protein disulfide-isome 98.3 5.2E-07 1.8E-11 101.6 6.3 69 135-215 367-437 (481)
161 3fw2_A Thiol-disulfide oxidore 98.3 3E-06 1E-10 79.6 10.3 81 137-220 32-133 (150)
162 2b5e_A Protein disulfide-isome 98.3 1.3E-06 4.5E-11 99.1 8.9 75 130-216 23-98 (504)
163 4fo5_A Thioredoxin-like protei 98.2 2.8E-06 9.7E-11 79.2 8.8 77 137-219 31-129 (143)
164 1jfu_A Thiol:disulfide interch 98.2 4.5E-06 1.6E-10 81.3 10.6 81 136-219 58-159 (186)
165 3ga4_A Dolichyl-diphosphooligo 98.2 1.6E-06 5.3E-11 86.2 6.9 71 136-217 35-117 (178)
166 2e7p_A Glutaredoxin; thioredox 98.2 2.2E-06 7.5E-11 77.3 7.3 76 129-219 11-86 (116)
167 2cvb_A Probable thiol-disulfid 98.2 2.5E-06 8.6E-11 83.4 8.1 81 136-219 31-132 (188)
168 1ttz_A Conserved hypothetical 98.2 2.2E-06 7.7E-11 75.1 6.3 58 142-218 3-60 (87)
169 1a0r_P Phosducin, MEKA, PP33; 98.2 1.1E-06 3.9E-11 91.5 5.1 69 137-219 132-200 (245)
170 2ywi_A Hypothetical conserved 98.2 5.2E-06 1.8E-10 81.5 9.5 81 137-220 44-147 (196)
171 3t58_A Sulfhydryl oxidase 1; o 98.1 4E-06 1.4E-10 96.4 9.5 72 135-217 27-106 (519)
172 3qcp_A QSOX from trypanosoma b 98.1 1.7E-06 5.9E-11 97.9 5.5 69 136-215 40-116 (470)
173 2b5e_A Protein disulfide-isome 98.1 4.1E-06 1.4E-10 95.1 8.2 68 135-216 373-443 (504)
174 3f8u_A Protein disulfide-isome 98.1 2.9E-06 9.8E-11 95.6 6.8 75 131-217 11-88 (481)
175 3us3_A Calsequestrin-1; calciu 98.1 4.7E-06 1.6E-10 91.3 7.9 76 131-217 23-104 (367)
176 2hls_A Protein disulfide oxido 98.1 7.2E-06 2.5E-10 84.8 8.6 77 128-218 127-208 (243)
177 2rli_A SCO2 protein homolog, m 98.1 9.6E-06 3.3E-10 77.5 8.8 79 137-219 25-145 (171)
178 3drn_A Peroxiredoxin, bacterio 98.0 1.3E-05 4.5E-10 76.6 9.2 79 137-219 27-126 (161)
179 2hyx_A Protein DIPZ; thioredox 98.0 6.4E-06 2.2E-10 90.2 7.8 83 134-219 78-180 (352)
180 3u5r_E Uncharacterized protein 98.0 1.8E-05 6.1E-10 80.1 10.1 81 137-220 57-160 (218)
181 3cmi_A Peroxiredoxin HYR1; thi 98.0 8E-06 2.7E-10 78.8 7.2 79 137-219 31-149 (171)
182 2ggt_A SCO1 protein homolog, m 98.0 4.8E-06 1.6E-10 78.9 5.3 80 137-219 22-142 (164)
183 3apo_A DNAJ homolog subfamily 98.0 8.9E-06 3E-10 97.3 8.0 79 128-218 664-743 (780)
184 2vup_A Glutathione peroxidase- 98.0 1.9E-05 6.5E-10 77.8 9.0 80 137-219 47-166 (190)
185 3uem_A Protein disulfide-isome 97.9 5.7E-06 1.9E-10 89.5 5.4 68 135-215 264-334 (361)
186 2trc_P Phosducin, MEKA, PP33; 97.9 2.3E-06 7.8E-11 87.4 2.0 68 138-219 120-187 (217)
187 3apo_A DNAJ homolog subfamily 97.9 9.9E-06 3.4E-10 96.9 7.8 80 126-217 121-200 (780)
188 2p5q_A Glutathione peroxidase 97.9 2.9E-05 1E-09 73.9 9.1 80 137-219 31-149 (170)
189 2djk_A PDI, protein disulfide- 97.9 2E-05 6.8E-10 73.5 7.4 77 128-216 13-92 (133)
190 3evi_A Phosducin-like protein 97.9 6.1E-06 2.1E-10 76.3 3.3 67 138-220 23-89 (118)
191 3e6u_A LANC-like protein 1; al 97.8 0.00051 1.7E-08 76.5 19.2 275 379-724 73-368 (411)
192 3kij_A Probable glutathione pe 97.8 4.8E-05 1.6E-09 74.1 9.0 80 137-219 37-151 (180)
193 2bmx_A Alkyl hydroperoxidase C 97.8 3.7E-05 1.3E-09 76.0 8.1 80 137-220 44-148 (195)
194 2v1m_A Glutathione peroxidase; 97.8 8.3E-05 2.8E-09 70.6 10.1 43 137-182 30-73 (169)
195 3dwv_A Glutathione peroxidase- 97.7 1.9E-05 6.6E-10 77.6 5.1 42 137-181 45-87 (187)
196 1we0_A Alkyl hydroperoxide red 97.7 5.5E-05 1.9E-09 74.0 8.2 79 137-219 30-134 (187)
197 1xvw_A Hypothetical protein RV 97.7 6.5E-05 2.2E-09 71.1 8.2 97 137-242 34-156 (160)
198 2k8s_A Thioredoxin; dimer, str 97.7 1.3E-05 4.5E-10 67.9 2.9 61 142-219 4-68 (80)
199 2ywm_A Glutaredoxin-like prote 97.7 0.00016 5.6E-09 72.8 10.7 68 136-211 18-89 (229)
200 2fgx_A Putative thioredoxin; N 97.7 4.2E-05 1.4E-09 69.8 5.5 66 139-219 29-94 (107)
201 2c0g_A ERP29 homolog, windbeut 97.7 7.4E-05 2.5E-09 77.9 8.1 68 131-215 26-105 (248)
202 2jsy_A Probable thiol peroxida 97.6 0.00012 4E-09 70.1 8.6 99 137-243 43-164 (167)
203 2k6v_A Putative cytochrome C o 97.6 5.1E-05 1.7E-09 72.3 5.9 79 137-219 34-152 (172)
204 1ks8_A Endo-B-1,4-glucanase; c 97.6 0.00068 2.3E-08 76.1 15.7 142 545-733 151-294 (433)
205 1xzo_A BSSCO, hypothetical pro 97.6 6.1E-05 2.1E-09 72.0 6.3 80 137-219 32-151 (174)
206 1zof_A Alkyl hydroperoxide-red 97.6 6.7E-05 2.3E-09 74.2 6.7 80 137-220 32-139 (198)
207 2p31_A CL683, glutathione pero 97.6 4.3E-05 1.5E-09 74.6 5.0 81 136-219 47-162 (181)
208 3kp9_A Vkorc1/thioredoxin doma 97.6 1.8E-05 6.3E-10 84.4 2.4 73 128-218 187-263 (291)
209 2f8a_A Glutathione peroxidase 97.6 0.00017 5.9E-09 72.6 9.2 43 137-182 46-89 (208)
210 1wjk_A C330018D20RIK protein; 97.6 6.3E-05 2.2E-09 67.0 5.3 62 137-217 14-77 (100)
211 1a8l_A Protein disulfide oxido 97.6 9.4E-05 3.2E-09 74.2 7.0 67 137-216 21-90 (226)
212 2obi_A PHGPX, GPX-4, phospholi 97.5 5.2E-05 1.8E-09 74.0 4.7 43 137-182 46-89 (183)
213 3gzk_A Cellulase; fold from GH 97.5 0.00084 2.9E-08 77.4 15.2 87 543-650 242-334 (537)
214 1uul_A Tryparedoxin peroxidase 97.5 0.00017 5.9E-09 71.6 8.2 80 137-220 35-143 (202)
215 2h01_A 2-Cys peroxiredoxin; th 97.5 6.7E-05 2.3E-09 73.8 4.9 80 137-220 30-137 (192)
216 1xvq_A Thiol peroxidase; thior 97.5 0.00029 9.9E-09 68.4 9.4 93 137-242 43-164 (175)
217 1zye_A Thioredoxin-dependent p 97.5 0.00015 5.2E-09 73.5 7.6 79 137-220 55-163 (220)
218 2gs3_A PHGPX, GPX-4, phospholi 97.5 0.00026 9E-09 69.2 8.4 43 137-182 48-91 (185)
219 1hyu_A AHPF, alkyl hydroperoxi 97.4 0.00021 7.3E-09 81.7 8.3 77 128-219 106-183 (521)
220 3gkn_A Bacterioferritin comigr 97.4 0.00063 2.2E-08 64.5 10.2 80 137-220 34-141 (163)
221 1qmv_A Human thioredoxin perox 97.4 0.0002 6.7E-09 70.9 6.8 78 137-219 33-140 (197)
222 3ztl_A Thioredoxin peroxidase; 97.4 0.00023 7.8E-09 72.2 7.3 81 136-220 67-176 (222)
223 1clc_A Endoglucanase CELD; EC: 97.3 0.0022 7.7E-08 75.3 15.5 89 544-650 287-378 (639)
224 2v8i_A Pectate lyase; periplas 97.3 0.15 5.1E-06 56.8 28.1 307 381-726 59-461 (543)
225 1eej_A Thiol:disulfide interch 97.3 0.0008 2.7E-08 68.0 9.7 24 136-159 84-107 (216)
226 4gqc_A Thiol peroxidase, perox 97.3 0.00032 1.1E-08 67.8 6.4 104 134-244 29-158 (164)
227 4hde_A SCO1/SENC family lipopr 97.3 0.00081 2.8E-08 65.3 9.2 53 136-191 30-89 (170)
228 2i81_A 2-Cys peroxiredoxin; st 97.3 0.00044 1.5E-08 69.8 7.6 80 137-220 51-158 (213)
229 2qc7_A ERP31, ERP28, endoplasm 97.2 0.0006 2.1E-08 70.7 8.3 71 129-215 13-94 (240)
230 1ia6_A Cellulase CEL9M; cellul 97.2 0.0035 1.2E-07 70.5 15.2 86 543-649 152-237 (441)
231 2cq9_A GLRX2 protein, glutared 97.2 0.00087 3E-08 62.5 8.4 76 128-219 17-93 (130)
232 2ht9_A Glutaredoxin-2; thiored 97.2 0.00078 2.7E-08 64.4 8.2 76 128-219 39-115 (146)
233 3hd5_A Thiol:disulfide interch 97.2 0.0017 5.9E-08 63.8 10.5 43 137-182 24-66 (195)
234 2b7k_A SCO1 protein; metalloch 97.1 0.0019 6.3E-08 64.2 10.6 22 137-158 40-62 (200)
235 1kte_A Thioltransferase; redox 97.1 0.0017 5.7E-08 57.3 8.4 75 129-219 3-81 (105)
236 4g2e_A Peroxiredoxin; redox pr 97.0 0.0014 4.7E-08 62.6 8.0 99 136-242 28-154 (157)
237 2hls_A Protein disulfide oxido 97.0 0.0018 6.2E-08 66.6 8.9 72 128-210 14-93 (243)
238 3gyk_A 27KDA outer membrane pr 96.9 0.00092 3.1E-08 64.4 6.0 23 136-158 20-42 (175)
239 1ego_A Glutaredoxin; electron 96.9 0.00074 2.5E-08 56.9 4.7 67 142-219 3-71 (85)
240 1t3b_A Thiol:disulfide interch 96.9 0.00082 2.8E-08 67.8 5.8 24 136-159 84-107 (211)
241 3ixr_A Bacterioferritin comigr 96.9 0.0031 1.1E-07 61.4 9.5 79 137-219 50-156 (179)
242 3h93_A Thiol:disulfide interch 96.9 0.0019 6.4E-08 63.4 7.9 38 137-177 24-61 (192)
243 1v58_A Thiol:disulfide interch 96.9 0.00048 1.6E-08 71.0 3.7 24 136-159 95-118 (241)
244 3p7x_A Probable thiol peroxida 96.8 0.0034 1.1E-07 60.1 9.1 96 137-242 45-164 (166)
245 3rhb_A ATGRXC5, glutaredoxin-C 96.8 0.0044 1.5E-07 55.7 9.1 78 128-219 9-86 (113)
246 2hze_A Glutaredoxin-1; thiored 96.8 0.0011 3.8E-08 60.1 5.1 80 128-219 9-88 (114)
247 3c1r_A Glutaredoxin-1; oxidize 96.8 0.0037 1.3E-07 57.2 8.4 80 128-219 15-95 (118)
248 1psq_A Probable thiol peroxida 96.8 0.0028 9.4E-08 60.5 7.7 35 205-242 127-161 (163)
249 1g87_A Endocellulase 9G; endog 96.8 0.033 1.1E-06 65.1 18.3 84 545-648 152-237 (614)
250 2c0d_A Thioredoxin peroxidase 96.7 0.0018 6.2E-08 65.9 6.4 80 137-220 55-162 (221)
251 3a2v_A Probable peroxiredoxin; 96.7 0.0028 9.7E-08 65.9 7.9 97 137-242 32-158 (249)
252 3me7_A Putative uncharacterize 96.7 0.0025 8.6E-08 61.5 6.9 79 137-219 27-142 (170)
253 1h75_A Glutaredoxin-like prote 96.7 0.0033 1.1E-07 52.6 6.7 60 142-218 3-62 (81)
254 3msz_A Glutaredoxin 1; alpha-b 96.6 0.0033 1.1E-07 53.3 6.1 65 140-218 4-73 (89)
255 2g0d_A Nisin biosynthesis prot 96.5 0.037 1.3E-06 60.9 16.0 131 546-718 209-352 (409)
256 3nzn_A Glutaredoxin; structura 96.5 0.0078 2.7E-07 53.4 8.0 68 141-218 23-90 (103)
257 1tf4_A T. fusca endo/EXO-cellu 96.4 0.033 1.1E-06 65.0 15.3 85 545-649 152-240 (605)
258 2yik_A Endoglucanase; hydrolas 96.4 0.03 1E-06 65.4 15.0 86 546-649 219-306 (611)
259 3h8q_A Thioredoxin reductase 3 96.4 0.01 3.6E-07 53.7 8.7 76 128-219 7-83 (114)
260 2yan_A Glutaredoxin-3; oxidore 96.4 0.013 4.3E-07 52.2 8.9 74 128-219 7-85 (105)
261 2yzh_A Probable thiol peroxida 96.3 0.011 3.6E-07 56.7 8.5 20 137-156 46-66 (171)
262 2i3y_A Epididymal secretory gl 96.3 0.017 5.8E-07 58.6 10.3 40 137-180 55-95 (215)
263 3hz8_A Thiol:disulfide interch 96.2 0.014 4.8E-07 57.7 9.4 42 137-181 23-64 (193)
264 1fov_A Glutaredoxin 3, GRX3; a 96.2 0.012 4.2E-07 48.9 7.6 62 142-219 3-64 (82)
265 2lqo_A Putative glutaredoxin R 96.2 0.013 4.3E-07 51.7 7.8 63 142-219 6-69 (92)
266 3uem_A Protein disulfide-isome 96.2 0.0067 2.3E-07 65.3 7.3 70 135-215 132-205 (361)
267 2a4v_A Peroxiredoxin DOT5; yea 96.2 0.01 3.6E-07 56.0 7.7 76 137-219 34-132 (159)
268 2ri9_A Mannosyl-oligosaccharid 96.1 0.18 6.2E-06 57.1 18.8 120 579-706 313-448 (475)
269 2pn8_A Peroxiredoxin-4; thiore 96.1 0.0067 2.3E-07 61.0 6.3 79 137-220 47-155 (211)
270 3qpm_A Peroxiredoxin; oxidored 96.1 0.0089 3E-07 61.5 7.4 80 137-220 76-184 (240)
271 2r37_A Glutathione peroxidase 96.1 0.017 5.7E-07 58.1 9.1 20 137-156 37-56 (207)
272 3keb_A Probable thiol peroxida 96.0 0.029 9.8E-07 57.5 10.6 38 204-244 137-174 (224)
273 1r7h_A NRDH-redoxin; thioredox 95.9 0.012 4.1E-07 48.0 5.9 60 142-218 3-62 (75)
274 1nxc_A Mannosyl-oligosaccharid 95.9 0.093 3.2E-06 59.5 14.8 159 544-729 105-275 (478)
275 1n8j_A AHPC, alkyl hydroperoxi 95.8 0.018 6.2E-07 56.3 8.0 79 137-219 29-133 (186)
276 1hcu_A Alpha-1,2-mannosidase; 95.8 0.17 5.9E-06 57.6 17.0 261 373-706 169-467 (503)
277 2xfg_A Endoglucanase 1; hydrol 95.8 0.061 2.1E-06 60.8 13.3 83 546-648 174-259 (466)
278 2rem_A Disulfide oxidoreductas 95.8 0.032 1.1E-06 54.3 9.5 24 137-160 24-47 (193)
279 2klx_A Glutaredoxin; thioredox 95.8 0.016 5.6E-07 49.4 6.6 59 142-218 8-67 (89)
280 3ctg_A Glutaredoxin-2; reduced 95.7 0.023 7.7E-07 52.9 7.7 78 128-218 27-106 (129)
281 3ic4_A Glutaredoxin (GRX-1); s 95.7 0.016 5.6E-07 49.6 6.2 67 142-219 14-80 (92)
282 3e6u_A LANC-like protein 1; al 95.7 0.087 3E-06 58.5 13.4 79 547-655 292-370 (411)
283 3tjj_A Peroxiredoxin-4; thiore 95.5 0.02 6.8E-07 59.5 7.0 20 137-156 90-110 (254)
284 2znm_A Thiol:disulfide interch 95.5 0.027 9.3E-07 54.9 7.7 23 137-159 21-43 (195)
285 3zrd_A Thiol peroxidase; oxido 95.5 0.011 3.9E-07 58.7 4.9 93 137-241 77-199 (200)
286 3qmx_A Glutaredoxin A, glutare 95.5 0.037 1.3E-06 49.0 7.7 64 140-219 16-80 (99)
287 1hcu_A Alpha-1,2-mannosidase; 95.4 0.12 4E-06 59.0 13.4 174 545-731 101-284 (503)
288 2khp_A Glutaredoxin; thioredox 95.3 0.037 1.3E-06 47.4 7.0 62 142-219 8-69 (92)
289 3l4n_A Monothiol glutaredoxin- 95.2 0.051 1.7E-06 50.6 8.3 79 128-218 4-82 (127)
290 1dl2_A Class I alpha-1,2-manno 95.2 0.12 4.2E-06 58.9 12.7 160 545-730 100-278 (511)
291 1x9d_A Endoplasmic reticulum m 95.2 0.16 5.5E-06 58.2 13.6 161 546-731 171-341 (538)
292 1nxc_A Mannosyl-oligosaccharid 94.8 0.05 1.7E-06 61.7 8.0 96 620-725 105-207 (478)
293 1x9d_A Endoplasmic reticulum m 94.7 1.8 6.3E-05 49.6 20.8 287 370-733 163-475 (538)
294 4eo3_A Bacterioferritin comigr 94.7 0.077 2.6E-06 57.0 8.9 133 137-292 23-174 (322)
295 1wik_A Thioredoxin-like protei 94.6 0.085 2.9E-06 47.1 7.8 71 131-218 8-82 (109)
296 1ia6_A Cellulase CEL9M; cellul 94.6 0.34 1.2E-05 54.4 14.1 110 299-415 50-194 (441)
297 2ri9_A Mannosyl-oligosaccharid 94.5 0.2 6.7E-06 56.8 12.1 170 545-731 88-271 (475)
298 2v2g_A Peroxiredoxin 6; oxidor 94.1 0.12 4.2E-06 52.9 8.5 36 203-242 126-161 (233)
299 2wfc_A Peroxiredoxin 5, PRDX5; 94.1 0.058 2E-06 52.0 5.7 19 137-155 30-49 (167)
300 1un2_A DSBA, thiol-disulfide i 94.0 0.026 8.9E-07 56.3 3.2 47 138-184 113-159 (197)
301 3gv1_A Disulfide interchange p 93.7 0.11 3.9E-06 49.4 6.9 26 134-159 10-35 (147)
302 2v8i_A Pectate lyase; periplas 93.6 0.16 5.5E-06 56.5 8.6 85 549-658 378-464 (543)
303 1tp9_A Peroxiredoxin, PRX D (t 93.5 0.057 2E-06 51.4 4.4 18 137-154 34-52 (162)
304 1w6k_A Lanosterol synthase; cy 93.3 3.3 0.00011 49.3 20.1 60 359-425 440-502 (732)
305 1nm3_A Protein HI0572; hybrid, 93.3 0.11 3.7E-06 52.7 6.4 18 137-154 32-50 (241)
306 1z6m_A Conserved hypothetical 93.3 0.19 6.6E-06 48.0 7.8 24 137-160 26-49 (175)
307 1dl2_A Class I alpha-1,2-manno 93.0 0.098 3.3E-06 59.7 6.1 97 620-726 99-208 (511)
308 1prx_A HORF6; peroxiredoxin, h 92.9 0.17 5.8E-06 51.3 7.2 36 203-242 130-165 (224)
309 3uma_A Hypothetical peroxiredo 92.7 0.13 4.3E-06 50.7 5.7 19 137-155 55-74 (184)
310 3ipz_A Monothiol glutaredoxin- 92.4 0.41 1.4E-05 42.8 8.2 75 128-219 8-86 (109)
311 1xcc_A 1-Cys peroxiredoxin; un 92.2 0.17 6E-06 51.0 6.2 35 204-242 128-162 (220)
312 1q98_A Thiol peroxidase, TPX; 91.9 0.081 2.8E-06 50.3 3.0 20 137-156 42-62 (165)
313 2wci_A Glutaredoxin-4; redox-a 91.8 0.5 1.7E-05 44.4 8.3 74 128-218 25-102 (135)
314 3mng_A Peroxiredoxin-5, mitoch 91.7 0.21 7.3E-06 48.6 5.8 19 137-155 42-61 (173)
315 4dvc_A Thiol:disulfide interch 91.5 0.63 2.2E-05 44.2 9.0 22 137-158 20-41 (184)
316 3gx8_A Monothiol glutaredoxin- 91.4 0.68 2.3E-05 42.4 8.7 77 128-219 6-87 (121)
317 1aba_A Glutaredoxin; electron 91.4 0.44 1.5E-05 40.4 6.9 64 143-219 3-78 (87)
318 1wzz_A Probable endoglucanase; 91.1 3.4 0.00011 44.6 15.1 181 512-725 17-202 (334)
319 3zyw_A Glutaredoxin-3; metal b 90.9 0.71 2.4E-05 41.5 8.2 75 128-219 6-84 (111)
320 1ks8_A Endo-B-1,4-glucanase; c 90.3 17 0.00059 40.4 20.4 110 299-415 48-191 (433)
321 3sbc_A Peroxiredoxin TSA1; alp 90.1 0.48 1.7E-05 48.1 7.0 100 137-242 51-177 (216)
322 1nm3_A Protein HI0572; hybrid, 89.9 0.62 2.1E-05 47.0 7.6 77 126-219 154-232 (241)
323 2g0d_A Nisin biosynthesis prot 89.6 3.9 0.00013 44.6 14.3 71 547-647 282-352 (409)
324 1t1v_A SH3BGRL3, SH3 domain-bi 88.7 0.52 1.8E-05 40.6 5.2 66 142-218 4-72 (93)
325 2pwj_A Mitochondrial peroxired 88.6 0.55 1.9E-05 45.2 5.8 19 137-155 42-61 (171)
326 3l9v_A Putative thiol-disulfid 88.6 0.15 5.2E-06 50.0 1.8 45 138-182 14-58 (189)
327 2wem_A Glutaredoxin-related pr 88.1 1 3.5E-05 41.1 7.0 75 128-219 10-89 (118)
328 2ct6_A SH3 domain-binding glut 87.0 0.8 2.7E-05 41.1 5.5 66 142-218 10-84 (111)
329 1ut9_A Cellulose 1,4-beta-cell 86.9 1.4 4.7E-05 51.4 8.9 85 547-649 291-381 (609)
330 3tue_A Tryparedoxin peroxidase 86.5 1.1 3.6E-05 45.7 6.7 43 137-181 55-98 (219)
331 3gzk_A Cellulase; fold from GH 86.5 3.6 0.00012 47.2 11.9 80 335-416 188-285 (537)
332 2wul_A Glutaredoxin related pr 85.7 1.2 3.9E-05 41.1 5.9 55 128-191 10-68 (118)
333 3feu_A Putative lipoprotein; a 84.7 0.58 2E-05 45.7 3.6 40 138-182 22-61 (185)
334 1g87_A Endocellulase 9G; endog 84.2 37 0.0013 39.5 19.1 148 299-467 49-237 (614)
335 2sqc_A Squalene-hopene cyclase 82.3 28 0.00097 40.4 17.2 80 337-425 396-487 (631)
336 1gxm_A Pectate lyase; mechanis 80.8 1.2 4E-05 48.1 4.3 43 381-424 75-117 (332)
337 1ut9_A Cellulose 1,4-beta-cell 80.6 15 0.00051 42.7 14.0 118 335-467 227-380 (609)
338 1clc_A Endoglucanase CELD; EC: 79.9 45 0.0015 39.0 17.7 161 543-722 196-379 (639)
339 2xfg_A Endoglucanase 1; hydrol 79.4 37 0.0013 38.1 16.3 119 579-720 112-260 (466)
340 2z07_A Putative uncharacterize 79.1 10 0.00035 41.4 11.5 51 542-607 237-287 (420)
341 4f9z_D Endoplasmic reticulum r 77.9 6.7 0.00023 39.0 8.8 77 128-215 120-201 (227)
342 1r76_A Pectate lyase; A-helica 75.7 2 6.8E-05 47.6 4.3 42 382-424 151-195 (408)
343 2okx_A Rhamnosidase B; alpha b 75.4 22 0.00076 43.4 14.0 113 541-667 625-751 (956)
344 1r76_A Pectate lyase; A-helica 75.3 33 0.0011 37.9 13.9 100 547-665 152-266 (408)
345 1w6k_A Lanosterol synthase; cy 75.0 20 0.00068 42.6 13.0 157 547-725 390-569 (732)
346 2x8g_A Thioredoxin glutathione 74.7 5.5 0.00019 45.7 8.0 75 129-219 9-84 (598)
347 1wzz_A Probable endoglucanase; 73.8 7.1 0.00024 42.0 8.1 97 547-662 109-209 (334)
348 4f82_A Thioredoxin reductase; 73.4 6 0.00021 38.7 6.8 26 137-162 46-72 (176)
349 2jad_A Yellow fluorescent prot 71.3 4.7 0.00016 43.9 5.9 77 128-219 251-331 (362)
350 3tdg_A DSBG, putative uncharac 71.1 2.8 9.7E-05 44.0 4.0 31 136-172 145-175 (273)
351 2yik_A Endoglucanase; hydrolas 71.0 49 0.0017 38.5 14.8 122 579-719 152-305 (611)
352 2jg0_A Periplasmic trehalase; 70.5 21 0.0007 40.8 11.4 93 544-658 306-402 (535)
353 3cih_A Putative alpha-rhamnosi 70.4 15 0.00052 43.4 10.7 111 542-666 382-508 (739)
354 1v7w_A Chitobiose phosphorylas 69.7 39 0.0013 40.2 14.1 115 547-665 429-554 (807)
355 3q6o_A Sulfhydryl oxidase 1; p 69.1 9 0.00031 38.3 7.2 86 135-242 154-239 (244)
356 3c7m_A Thiol:disulfide interch 66.8 5.4 0.00019 38.1 4.8 43 137-181 16-60 (195)
357 1ulv_A Glucodextranase; GH fam 66.5 75 0.0026 39.2 15.8 127 583-727 348-481 (1020)
358 1u6t_A SH3 domain-binding glut 66.3 7.3 0.00025 35.9 5.2 45 142-190 2-47 (121)
359 1v5d_A Chitosanase; chitosan d 65.8 33 0.0011 37.5 11.4 129 586-727 98-232 (386)
360 3l9s_A Thiol:disulfide interch 65.1 3.5 0.00012 40.4 3.1 44 138-181 21-66 (191)
361 1v5d_A Chitosanase; chitosan d 61.5 11 0.00038 41.3 6.6 94 547-655 138-231 (386)
362 2z07_A Putative uncharacterize 60.0 30 0.001 37.6 9.8 46 622-668 238-288 (420)
363 3qde_A Cellobiose phosphorylas 58.4 67 0.0023 38.6 13.1 113 535-659 412-559 (811)
364 1kwf_A Endoglucanase A; hydrol 57.4 1.2E+02 0.0041 32.7 13.9 124 586-725 82-214 (363)
365 2okx_A Rhamnosidase B; alpha b 57.2 2.6E+02 0.0089 34.0 18.3 135 583-727 595-740 (956)
366 3a0o_A Oligo alginate lyase; a 54.9 2E+02 0.007 33.8 16.5 27 383-409 209-235 (776)
367 2axo_A Hypothetical protein AT 54.1 26 0.00088 36.6 7.5 18 141-158 45-62 (270)
368 2h6f_B Protein farnesyltransfe 52.9 27 0.00094 38.9 7.9 118 286-427 76-195 (437)
369 1xiy_A Peroxiredoxin, pfaop; a 51.9 18 0.00062 35.2 5.6 44 137-181 42-90 (182)
370 3ren_A Glycosyl hydrolase, fam 50.9 20 0.00068 38.8 6.2 119 586-725 82-202 (350)
371 3rrs_A Cellobiose phosphorylas 50.8 92 0.0031 37.4 12.6 113 535-659 419-566 (822)
372 3ren_A Glycosyl hydrolase, fam 49.3 36 0.0012 36.9 7.8 87 547-655 117-203 (350)
373 1s3c_A Arsenate reductase; ARS 43.6 11 0.00039 35.2 2.5 61 143-217 5-66 (141)
374 1ulv_A Glucodextranase; GH fam 43.2 3E+02 0.01 33.9 15.6 34 579-612 464-502 (1020)
375 1z3e_A Regulatory protein SPX; 43.1 16 0.00054 33.5 3.4 16 142-157 3-18 (132)
376 3rrs_A Cellobiose phosphorylas 42.3 1.8E+02 0.006 35.0 13.2 59 583-643 382-445 (822)
377 2l4c_A Endoplasmic reticulum r 42.1 59 0.002 29.4 7.1 66 128-212 29-94 (124)
378 1kwf_A Endoglucanase A; hydrol 41.7 37 0.0013 36.8 6.6 93 547-656 123-216 (363)
379 3qxf_A Endoglucanase; cellulas 40.8 32 0.0011 37.3 5.8 75 586-660 53-135 (355)
380 4gl3_A Putative glucoamylase; 40.0 80 0.0027 35.0 9.0 97 547-658 58-168 (424)
381 3qde_A Cellobiose phosphorylas 39.3 2.6E+02 0.0089 33.4 14.0 59 583-643 375-438 (811)
382 4acq_A Alpha-2-macroglobulin; 38.3 2.3E+02 0.0077 36.4 13.9 79 336-424 980-1058(1451)
383 1wu4_A Xylanase Y; (alpla/alph 38.2 1.4E+02 0.0049 32.6 10.7 133 586-725 89-232 (396)
384 3us3_A Calsequestrin-1; calciu 37.8 1E+02 0.0034 32.9 9.3 82 112-212 118-200 (367)
385 1qqf_A Protein (complement C3D 37.6 35 0.0012 34.9 5.4 79 334-425 33-111 (277)
386 1h12_A Endo-1,4-beta-xylanase; 37.6 48 0.0016 36.5 6.7 89 547-656 147-240 (405)
387 2p0v_A Hypothetical protein BT 37.5 2.5E+02 0.0086 31.6 12.5 111 618-730 178-319 (489)
388 3f4s_A Alpha-DSBA1, putative u 37.3 26 0.00088 35.2 4.2 21 199-219 167-187 (226)
389 1sji_A Calsequestrin 2, calseq 36.7 1.2E+02 0.004 31.8 9.6 83 112-213 116-199 (350)
390 3fz4_A Putative arsenate reduc 36.3 25 0.00086 31.8 3.6 59 143-215 6-65 (120)
391 2vn4_A Glucoamylase; hydrolase 36.0 5.5E+02 0.019 29.5 17.7 96 543-654 186-291 (599)
392 3l78_A Regulatory protein SPX; 35.8 23 0.00079 32.0 3.2 60 143-216 3-63 (120)
393 1hzf_A Complement factor C4A; 35.8 1.6E+02 0.0053 31.5 10.4 115 284-416 92-227 (367)
394 1tf4_A T. fusca endo/EXO-cellu 35.1 4.5E+02 0.015 30.3 14.7 120 579-720 91-240 (605)
395 3gkx_A Putative ARSC family re 34.4 16 0.00056 33.1 2.0 60 142-215 6-66 (120)
396 2p0v_A Hypothetical protein BT 34.3 3E+02 0.01 31.0 12.5 152 547-722 183-378 (489)
397 4fnv_A Heparinase III protein, 33.5 6.4E+02 0.022 29.5 17.8 88 545-655 261-356 (702)
398 2wy7_A Complement C3D fragment 33.2 45 0.0015 34.8 5.4 79 334-425 49-127 (310)
399 1wu4_A Xylanase Y; (alpla/alph 33.2 56 0.0019 35.9 6.4 97 547-656 131-234 (396)
400 2sqc_A Squalene-hopene cyclase 32.9 85 0.0029 36.4 8.2 94 547-664 315-417 (631)
401 2jg0_A Periplasmic trehalase; 32.9 46 0.0016 37.9 5.8 49 619-667 305-360 (535)
402 1v7w_A Chitobiose phosphorylas 31.8 2.9E+02 0.01 32.5 12.8 50 546-607 505-557 (807)
403 3p2c_A Putative glycosyl hydro 31.7 4.5E+02 0.015 29.4 13.2 113 619-731 162-302 (463)
404 2a6h_F RNA polymerase sigma fa 30.9 85 0.0029 34.6 7.4 64 452-537 353-422 (423)
405 2xhf_A Peroxiredoxin 5; oxidor 30.5 55 0.0019 31.5 5.2 26 137-163 41-67 (171)
406 3cih_A Putative alpha-rhamnosi 29.8 74 0.0025 37.6 7.1 55 546-612 457-514 (739)
407 3rdw_A Putative arsenate reduc 29.5 28 0.00096 31.5 2.7 62 142-217 7-70 (121)
408 3t72_q RNA polymerase sigma fa 29.4 1.4E+02 0.0049 26.0 7.2 28 500-527 42-69 (99)
409 1qqf_A Protein (complement C3D 29.1 4.5E+02 0.016 26.4 12.9 120 284-416 39-171 (277)
410 3qxf_A Endoglucanase; cellulas 28.6 63 0.0021 35.0 5.6 88 547-655 98-191 (355)
411 1hzf_A Complement factor C4A; 28.6 93 0.0032 33.4 7.1 77 335-425 87-163 (367)
412 2fba_A Glucoamylase Glu1; (alp 28.5 2.5E+02 0.0086 31.5 10.9 119 533-664 140-272 (492)
413 1n4q_B Geranyltransferase type 28.0 1.4E+02 0.0048 32.4 8.4 114 286-423 70-210 (377)
414 3qt9_A Putative uncharacterize 27.8 4E+02 0.014 29.4 11.9 113 619-731 134-274 (427)
415 3q7a_B Farnesyltransferase bet 27.1 2.3E+02 0.008 32.2 10.1 22 403-425 215-236 (520)
416 2wam_A RV2714, conserved hypot 26.5 2.2E+02 0.0075 30.7 9.4 161 108-299 140-309 (351)
417 3qry_B Putative uncharacterize 25.7 4E+02 0.014 29.5 11.4 112 619-731 133-274 (426)
418 1tty_A Sigma-A, RNA polymerase 25.2 1.5E+02 0.005 24.7 6.3 28 500-527 41-68 (87)
419 3c68_A Uncharacterized protein 25.0 76 0.0026 37.8 6.0 44 625-668 561-608 (761)
420 3t58_A Sulfhydryl oxidase 1; o 24.2 69 0.0024 36.3 5.3 66 135-218 154-220 (519)
421 3bci_A Disulfide bond protein 24.2 34 0.0012 32.4 2.3 24 136-159 9-32 (186)
422 3gha_A Disulfide bond formatio 23.9 68 0.0023 31.2 4.5 31 137-169 28-58 (202)
423 1l9z_H Sigma factor SIGA; heli 22.8 84 0.0029 35.0 5.4 53 452-526 368-424 (438)
424 3bci_A Disulfide bond protein 22.6 42 0.0014 31.7 2.6 18 199-219 145-162 (186)
425 2h8l_A Protein disulfide-isome 22.5 3E+02 0.01 27.2 9.2 69 137-215 128-206 (252)
426 2wy7_A Complement C3D fragment 22.3 6.4E+02 0.022 25.8 12.8 120 284-416 55-187 (310)
427 3cu7_A Complement C5; Mg domai 21.8 1.4E+03 0.047 29.5 20.4 77 335-424 1043-1119(1676)
428 1g9g_A Cellulase CEL48F; proce 21.6 2.7E+02 0.0094 31.7 9.0 110 535-660 401-536 (629)
429 3gha_A Disulfide bond formatio 21.5 70 0.0024 31.1 4.1 32 199-241 159-190 (202)
430 3kzq_A Putative uncharacterize 21.4 87 0.003 30.2 4.7 37 199-242 165-202 (208)
431 3gmf_A Protein-disulfide isome 21.2 76 0.0026 31.2 4.2 45 187-243 153-197 (205)
432 1gxm_A Pectate lyase; mechanis 21.1 6.6E+02 0.022 26.8 11.7 74 621-704 75-148 (332)
433 1fob_A Beta-1,4-galactanase; B 20.8 3.4E+02 0.012 28.5 9.6 40 127-166 62-103 (334)
434 3c68_A Uncharacterized protein 20.7 1.3E+02 0.0044 35.9 6.7 52 544-607 556-607 (761)
435 2w7n_A TRFB transcriptional re 20.3 2.2E+02 0.0075 25.1 6.6 54 448-526 5-63 (101)
436 3feu_A Putative lipoprotein; a 20.2 73 0.0025 30.5 3.8 35 199-242 148-183 (185)
No 1
>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}
Probab=100.00 E-value=4.2e-45 Score=363.21 Aligned_cols=168 Identities=52% Similarity=1.035 Sum_probs=163.4
Q ss_pred cccccccCCChhhhcccCCCcccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEc
Q 003940 101 HTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD 180 (784)
Q Consensus 101 ~~NrL~~e~SpYL~qha~~~v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD 180 (784)
++|||+.|+||||+||++|||+|++|+++++++|+++||||||+|+|+||+|||+|+.++|++++|++.+|++||.||||
T Consensus 2 ~~n~l~~~~spyl~~ha~~~v~W~~~~~ea~~~A~~~~KpVlvdF~A~WC~~Ck~m~~~~f~~~~va~~l~~~fv~ikVD 81 (173)
T 3ira_A 2 EPNRLIKEKSPYLLQHAYNPVDWYPWGEEAFEKARKENKPVFLSIGYSTCHWCHMMAHESFEDEEVAGLMNEAFVSIKVD 81 (173)
T ss_dssp CCCGGGGCCCHHHHTTTTSSSCCBCSSHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHHTTTCHHHHHHHHHHCEEEEEE
T ss_pred CCcccccCCCHHHHhccCCCCCCCCcCHHHHHHHHHhCCCEEEecccchhHhhccccccccCCHHHHHHHHhcCceeeeC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 003940 181 REERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAI 260 (784)
Q Consensus 181 ~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~~~l~~~a~~~~ 260 (784)
++++|++++.||.++|.++|++|||++||++|+|+|++++||+|+++.+++++|.++|++|.+.|+++|++|.+.|++|+
T Consensus 82 ~de~~~l~~~y~~~~q~~~gv~g~Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~~~~~~~~~~~~~~~~~~ 161 (173)
T 3ira_A 82 REERPDIDNIYMTVCQIILGRGGWPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEIWEQQHEEVLDSAEKIT 161 (173)
T ss_dssp TTTCHHHHHHHHHHHHHHHSCCCSSEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHHHHHHHSHHHHHHHHHHTC
T ss_pred CcccCcHHHHHHHHHHHHcCCCCCcceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhh
Q 003940 261 EQLSEALS 268 (784)
Q Consensus 261 ~~l~~~~~ 268 (784)
++|++...
T Consensus 162 ~~~~~~~~ 169 (173)
T 3ira_A 162 STIQEMIK 169 (173)
T ss_dssp SHHHHHHH
T ss_pred HHHHHhhc
Confidence 99987644
No 2
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=100.00 E-value=1.5e-33 Score=312.92 Aligned_cols=335 Identities=10% Similarity=-0.023 Sum_probs=249.4
Q ss_pred HHHHHHHHH-hhccccCCCCCC------CCCCCChhHHHH----HHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCC
Q 003940 285 LRLCAEQLS-KSYDSRFGGFGS------APKFPRPVEIQM----MLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGI 353 (784)
Q Consensus 285 l~~~~~~l~-~~~D~~~GGfg~------aPKFP~p~~l~~----Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi 353 (784)
++.++..+. ..+|+++|||++ .|| |.+..+.+ +..+....... ...++++.+++|.+|++.|.+++
T Consensus 19 ~~~~l~~w~~~~~D~~~GGf~~~~~~dg~~~-~~~k~l~~nar~l~~~a~a~~~~-~~~~~~~~l~~A~~~~~fl~~~~- 95 (402)
T 1fp3_A 19 LDRVMAFWLEHSHDREHGGFFTCLGRDGRVY-DDLKYVWLQGRQVWMYCRLYRKL-ERFHRPELLDAAKAGGEFLLRHA- 95 (402)
T ss_dssp HHHHHHHHHHHSBCTTTSSBCCCBCTTSCBS-CCCEEHHHHHHHHHHHHHHHHHC-GGGCCHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhhccCCCCCCCCEeeEECCCCCCC-CCccchhhhHHHHHHHHHHHHHh-cccCCHHHHHHHHHHHHHHHHhc-
Confidence 356677787 799999999966 788 76643433 33332111100 00124789999999999999977
Q ss_pred cccCCC-eEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc-CCCCceeecccCCC
Q 003940 354 HDHVGG-GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI-GPGGEIFSAEDADS 431 (784)
Q Consensus 354 ~D~v~G-GF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~-~~~Ggfysa~DADS 431 (784)
+|+.|| ||| |++|++|.+||++|||||||.++++|+++|++|+++.|++.|.+++++++++|. +++| +|++.|++.
T Consensus 96 ~d~~gg~g~~-~s~d~dg~~~~~~~~lyd~af~~~a~~~~~~atgd~~~~~~A~~l~~~~~~~~~d~~~G-~f~~~~~~~ 173 (402)
T 1fp3_A 96 RVAPPEKKCA-FVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSG-LGRPQLPGA 173 (402)
T ss_dssp BSSTTSCCBC-SEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCGGG-GCCCCCTTS
T ss_pred cCcCCCCceE-EEECCCCCccccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCc-ccCccccCc
Confidence 999988 999 899999999999999999999999999999999999999999999999999998 5555 556665543
Q ss_pred ccccccccccCCceEEechHHHHHHhhhhHHHHHH---HhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcC
Q 003940 432 AETEGATRKKEGAFYVWTSKEVEDILGEHAILFKE---HYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLG 508 (784)
Q Consensus 432 ~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~---~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g 508 (784)
.+ .++. . ..-...+.+.+ ++.++++ +
T Consensus 174 ~~-------~~~~----~------~~m~~~~~~l~l~~l~~~~~~----------------------------------~ 202 (402)
T 1fp3_A 174 VA-------SESM----A------VPMMLLCLVEQLGEEDEELAG----------------------------------R 202 (402)
T ss_dssp CC-------EEET----H------HHHHHHHHHHHHHTTCHHHHH----------------------------------H
T ss_pred cC-------CCCc----c------hHHHHHHHHHHHHHHHHhcCc----------------------------------H
Confidence 11 1100 0 00011122222 2222211 0
Q ss_pred CCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhch----HH--------H---HHHHHHHHHHHhhhhhhhhcccCCC
Q 003940 509 MPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSW----NG--------L---VISSFARASKILKSEAESAMFNFPV 573 (784)
Q Consensus 509 ~~~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsW----Na--------l---~I~ALa~a~~~~~d~~~~~~~~~~~ 573 (784)
-.+.+.+.++.++++ ++.|..|+.+++|.. | |. . ..|.|+++++++++
T Consensus 203 -~~~~a~~~~~~~~~~-~~~~~~~~~e~~d~d----w~~~~~~~g~~~~pgh~ie~~wlL~~a~~~~~~----------- 265 (402)
T 1fp3_A 203 -YAQLGHWCARRILQH-VQRDGQAVLENVSED----GEELSGCLGRHQNPGHALEAGWFLLRHSSRSGD----------- 265 (402)
T ss_dssp -THHHHHHHHHHHHTT-EETTTTEECSEEETT----SCBCCHHHHHEECHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred -HHHHHHHHHHHHHHH-hCcCCCeEEEEECCC----CCccCCCCCCCCCCCcHHHHHHHHHHHHHHcCC-----------
Confidence 124556777888888 888999999998853 6 22 1 45589999999998
Q ss_pred CCCChHHHHHHHHHHHHHH-HHhccccCCCeEEEE-ecCCCCC-----CCCCcchHHHHHHHHHHHHHHcCCHHHHHHHH
Q 003940 574 VGSDRKEYMEVAESAASFI-RRHLYDEQTHRLQHS-FRNGPSK-----APGFLDDYAFLISGLLDLYEFGSGTKWLVWAI 646 (784)
Q Consensus 574 ~~~~~~~yle~A~~~a~~l-~~~l~d~~~G~l~~~-~~dg~~~-----~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~ 646 (784)
++|++.|+++++++ .++.||++.|+++++ ..+|.+. ....++.++.+|.|++.||++|||++||++|+
T Consensus 266 -----~~~l~~A~~~~~~~~~~~~~d~~~gg~~~~~~~~g~~~~~l~d~~~~~W~qaea~~a~l~ly~~tgd~~yl~~a~ 340 (402)
T 1fp3_A 266 -----AKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFY 340 (402)
T ss_dssp -----HHHHHHHHHHHTHHHHHHHBCTTTCSBCSCEETTSCCCSSTTTTCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCccccCcCCCcCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 89999999999999 999999775677665 6777653 23455666799999999999999999999999
Q ss_pred HHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHH
Q 003940 647 ELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 698 (784)
Q Consensus 647 ~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~ 698 (784)
++++.+.++|+|+++|+||++...+..+....|.. -..+|-.|..++..++
T Consensus 341 ~~~~~~~~~f~D~~~G~w~~~~~~~g~~~~~~k~~-~~k~~yH~~r~~~~~~ 391 (402)
T 1fp3_A 341 QVAEYTFRQFRDPEYGEWFGYLNREGKVALTIKGG-PFKGCFHVPRCLAMCE 391 (402)
T ss_dssp HHHHHHHHHTBCTTTSSBCCEECTTSCEEECCSSC-SSCCSSHHHHHHHHHH
T ss_pred HHHHHHHHhCcCCCCCceEeeECCCcCCCCCCCCC-CCCCCCccHHHHHHHH
Confidence 99999999999999999999887776665544332 4567888887665544
No 3
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=100.00 E-value=1.2e-33 Score=311.70 Aligned_cols=251 Identities=12% Similarity=0.027 Sum_probs=201.1
Q ss_pred HHHHcCCCcccCCCeE-EEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHc-cCChHHHHHHHHHHHHHHHhccCCCCce
Q 003940 346 QCMAKGGIHDHVGGGF-HRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSL-TKDVFYSYICRDILDYLRRDMIGPGGEI 423 (784)
Q Consensus 346 ~~m~~GGi~D~v~GGF-~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~-t~d~~y~~~A~~t~~fl~~~m~~~~Ggf 423 (784)
-......++|| +||| +||++|.. .+|| ||||||||+++++|++||++ ++++.|+++|+++++||+++|++++|||
T Consensus 21 l~fw~~~~~D~-~GGf~~~~~~d~~-~~~~-eK~l~~nar~i~~~a~a~~~~~~~~~~~~~A~~~~~~l~~~~~~~~Gg~ 97 (388)
T 2gz6_A 21 LPFWENHSLDS-EGGYFTCLDRQGK-VYDT-DKFIWLQNRQVWTFSMLCNQLEKRENWLKIARNGAKFLAQHGRDDEGNW 97 (388)
T ss_dssp HHHHHHHCBCT-TSSBCCEEBTTSC-EEEC-CEEHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHSBCTTSCB
T ss_pred HHHHHhcCCCC-CCCEEeEECCCCC-cCCc-chhHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCCCCE
Confidence 33444568999 9995 79999988 8898 99999999999999999999 8999999999999999999999999999
Q ss_pred eecccCCCccccccccccCCceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHH
Q 003940 424 FSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSAS 503 (784)
Q Consensus 424 ysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~ 503 (784)
|+++|+|+.+.
T Consensus 98 ~~~~d~dg~~~--------------------------------------------------------------------- 108 (388)
T 2gz6_A 98 YFALTRGGEPL--------------------------------------------------------------------- 108 (388)
T ss_dssp CSEECTTSCBC---------------------------------------------------------------------
T ss_pred EEEEcCCCCcc---------------------------------------------------------------------
Confidence 99999887321
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHH
Q 003940 504 ASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYME 583 (784)
Q Consensus 504 a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle 583 (784)
|++..+.+||++|.||+++++++++ ++|++
T Consensus 109 ----------------------------------~~~~~~~~~af~i~al~~~y~~tg~----------------~~~l~ 138 (388)
T 2gz6_A 109 ----------------------------------VQPYNIFSDCFAAMAFSQYALASGE----------------EWAKD 138 (388)
T ss_dssp ----------------------------------CCCCCHHHHHHHHHHHHHHHHHHCC----------------HHHHH
T ss_pred ----------------------------------cCCcchHHHHHHHHHHHHHHHHhCC----------------HHHHH
Confidence 1112234799999999999999998 89999
Q ss_pred HHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCc
Q 003940 584 VAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG 663 (784)
Q Consensus 584 ~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Gg 663 (784)
.|+++++++.++++++ .|.+.+.+.++.+ ..+ ++++++++.++++||++|+|++|++.|+++++.+.++|+|+++|+
T Consensus 139 ~A~~~~~~i~~~~~d~-~g~~~~~~~~~~~-~~~-~~~~~~~~~all~l~~~t~d~~~~~~A~~~~~~~~~~~~~~~~g~ 215 (388)
T 2gz6_A 139 VAMQAYNNVLRRKDNP-KGKYTKTYPGTRP-MKA-LAVPMILANLTLEMEWLLPQETLENVLAATVQEVMGDFLDQEQGL 215 (388)
T ss_dssp HHHHHHHHHHTC---------------CCC-CEE-THHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHTTEETTTTE
T ss_pred HHHHHHHHHHHHhcCC-CcccCcccCCCCC-CCC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCe
Confidence 9999999999999875 3544444444432 333 889999999999999999999999999999999999999998887
Q ss_pred ccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 003940 664 YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 726 (784)
Q Consensus 664 yf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~ 726 (784)
+......+...+ .++..|...|++|+.++.+|+++++++|+ +.|++.|++++..+...
T Consensus 216 ~~e~~~~~w~~~--~~~~~~~~~pgh~~e~a~lL~~~~~~tgd---~~~~~~A~~~~~~~~~~ 273 (388)
T 2gz6_A 216 MYENVAPDGSHI--DCFEGRLINPGHGIEAMWFIMDIARRKND---SKTINQAVDVVLNILNF 273 (388)
T ss_dssp ECSEECTTSCCC--CSTTTTEECHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCC--CCcccCcCCCCHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHH
Confidence 633332333222 34456788999999999999999999985 79999999999987543
No 4
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=99.97 E-value=9.1e-31 Score=293.39 Aligned_cols=303 Identities=14% Similarity=0.048 Sum_probs=242.4
Q ss_pred HHHHHHhhccccCCCCCC-------CCCCCChhHHH-HHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCC
Q 003940 288 CAEQLSKSYDSRFGGFGS-------APKFPRPVEIQ-MMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGG 359 (784)
Q Consensus 288 ~~~~l~~~~D~~~GGfg~-------aPKFP~p~~l~-~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~G 359 (784)
++..+...+|++ ||+. -|.++.-..++ .++..+......| ++..+++|.+|++.|.++ ++|+.+|
T Consensus 20 ll~f~~~~~d~~--GF~~ld~~g~~~~~~~k~~~~nar~i~~~a~a~~~g----~~~~l~~A~~~~~fl~~~-~~D~~~G 92 (421)
T 2zbl_A 20 IFNFGKNAVVPT--GFGWLGNKGQIKEEMGTHLWITARMLHVYSVAASMG----RPGAYDLVDHGIKAMNGA-LRDKKYG 92 (421)
T ss_dssp HHHHHGGGEETT--EECCBCTTSCBCGGGCEEHHHHHHHHHHHHHHHHTT----CTTHHHHHHHHHHHHTTT-TBCTTTS
T ss_pred HHHHHHhCcCCC--CcceECCCCCCCCCchhhHHHHHHHHHHHHHHHHcC----ChhHHHHHHHHHHHHHHh-ccCcCCC
Confidence 334456788988 6842 24444433333 2222222211122 468999999999999997 9999999
Q ss_pred eEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCC-CCceeecccCCCccccccc
Q 003940 360 GFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGP-GGEIFSAEDADSAETEGAT 438 (784)
Q Consensus 360 GF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~-~Ggfysa~DADS~~~~~~~ 438 (784)
||| ||+|++|.+|| ||||||||.++.+|++ |++|+++.|++.|+++++++.++|+++ +||||++.|+|+.+
T Consensus 93 G~~-~s~d~dg~~~~-~k~lyd~Af~i~al~~-~~~tg~~~~l~~a~~~~~~l~~~~~d~~~Ggf~~~~d~d~~~----- 164 (421)
T 2zbl_A 93 GWY-ACVNDQGVVDA-SKQGYQHFFALLGAAS-AVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDEAFSQ----- 164 (421)
T ss_dssp SBC-SEEETTEEEEC-CEEHHHHHHHHHHHHH-HHTTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTTSCS-----
T ss_pred eEE-EEeCCCCCcCC-chhHHHHHHHHHHHHH-HHHhCCccHHHHHHHHHHHHHHHhccCCCCCeeeeecCCCCc-----
Confidence 999 89999999999 9999999999999999 999999999999999999999999998 69999999998731
Q ss_pred cccCCceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHH
Q 003940 439 RKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNIL 518 (784)
Q Consensus 439 ~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l 518 (784)
.+ +
T Consensus 165 --~~-----------------------------------------------~---------------------------- 167 (421)
T 2zbl_A 165 --TE-----------------------------------------------D---------------------------- 167 (421)
T ss_dssp --BC-----------------------------------------------S----------------------------
T ss_pred --cc-----------------------------------------------c----------------------------
Confidence 00 0
Q ss_pred HHHHHHHHhhhcCCCCCCCCchhhhchHHHH--HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhc
Q 003940 519 GECRRKLFDVRSKRPRPHLDDKVIVSWNGLV--ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHL 596 (784)
Q Consensus 519 ~~~r~kL~~~R~~R~~P~lDdKiitsWNal~--I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l 596 (784)
...||+.| +.+|+++++++++ ++|++.|+++++++.+.+
T Consensus 168 -----------------------~~~~n~~m~~~~al~~l~~~tgd----------------~~~~~~A~~~~~~~~~~~ 208 (421)
T 2zbl_A 168 -----------------------YRGGNANMHAVEAFLIVYDVTHD----------------KKWLDRALRIASVIIHDV 208 (421)
T ss_dssp -----------------------CEEHHHHHHHHHHHHHHHHTTCC----------------THHHHHHHHHHHHHCCCC
T ss_pred -----------------------cCCCcHHHHHHHHHHHHHHhhCC----------------HHHHHHHHHHHHHHHHHh
Confidence 01478865 9999999999998 789999999999999999
Q ss_pred cccCCCeEEEEecCCCCCCCCC-cch-----------HHHH---HHHHHHHHHHc---CC--H-HHHHHHHHHHHHHHHh
Q 003940 597 YDEQTHRLQHSFRNGPSKAPGF-LDD-----------YAFL---ISGLLDLYEFG---SG--T-KWLVWAIELQNTQDEL 655 (784)
Q Consensus 597 ~d~~~G~l~~~~~dg~~~~~~~-leD-----------yA~l---i~aLL~LYeaT---gd--~-~yL~~A~~L~~~~~~~ 655 (784)
.++.+|++.+.++++......+ ++| |++. +..|+++|+++ |+ + .|++.|+++++.+.+.
T Consensus 209 ~~~~~~~l~~~f~~~~~~~~~~~~dd~~~r~~~~~~~pgh~iE~~wlLl~~~~~~~~~~~~~~~~~l~~A~~l~~~~~~~ 288 (421)
T 2zbl_A 209 ARNGDYRVNEHFDSQWNPIRDYNKDNPAHRFRAYGGTPGAWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRD 288 (421)
T ss_dssp CGGGTTCCCCEECTTSCBCTTTTTTSTTCSSSCSSBCHHHHHHHHHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHH
T ss_pred ccCCCCchhhhcCCccccchhccCCCcccccccCCCCCChHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHHHHHHH
Confidence 8866678877776654433333 444 8887 77899999999 56 5 8999999999999999
Q ss_pred ccccC-CCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHh
Q 003940 656 FLDRE-GGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDM 730 (784)
Q Consensus 656 F~D~~-~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~~ 730 (784)
+||++ .||+|.+...++.++.|.|.. ..|+.++.++++|+++||+ +.|.+.|+++++.+...+...
T Consensus 289 g~d~~~~GG~~~~~~~~g~~~~~~k~~------w~~aea~~all~l~~~tgd---~~yl~~a~~~~~~~~~~~~d~ 355 (421)
T 2zbl_A 289 AWAPDGADGFVYSVDWDGKPIVRERVR------WPIVEAMGTAYALYTLTDD---SQYEEWYQKWWDYCIKYLMDY 355 (421)
T ss_dssp HBSCSSSSSBCSCBCTTSCBSCCCEEH------HHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHTBCT
T ss_pred hcCCCCCCcEEEeecCCCCccCCCccc------HHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhCCCC
Confidence 99988 678777766666666666665 5599999999999999996 789999999999998877654
No 5
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=99.94 E-value=1.3e-26 Score=258.29 Aligned_cols=339 Identities=14% Similarity=0.089 Sum_probs=234.4
Q ss_pred HHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccC
Q 003940 339 KMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIG 418 (784)
Q Consensus 339 ~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~ 418 (784)
..+...|.=-...+ .| .+|||+.+..+....+||+||||++||++|++|+.||++++++.|+++|+++++||.++|++
T Consensus 13 ~~~~~~l~fw~~~~-~D-~~GGf~~~l~~dg~~~~~~~k~l~~n~r~i~~~a~a~~~~g~~~~l~~A~~~~~fl~~~~~d 90 (402)
T 3gt5_A 13 THISDTMAFYHPRC-ID-SAGGFFHYFRDDGSIYNATHRHLVSSTRFVFNYAMAYLQFGTAEYLDAVHHGLSYVRDVHRN 90 (402)
T ss_dssp HHHHHHHHHHTTTT-BC-TTSSBCCEECTTSCEEESSEEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHhcC-CC-CCcCeeeEECCCCCCCCCCchhHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHhCcc
Confidence 33444454333333 56 58999964433344579999999999999999999999999999999999999999999999
Q ss_pred CC-CceeecccCCCccccccccccCCceEEechHHHHHHhhhh--HHH-------HHHHhcccCCC-CcCCCCCCCCC-C
Q 003940 419 PG-GEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH--AIL-------FKEHYYLKPTG-NCDLSRMSDPH-N 486 (784)
Q Consensus 419 ~~-Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~--~~l-------~~~~f~l~~~G-n~e~~~~~dp~-g 486 (784)
++ ||||+++ .|+.+.+..+.-+.-+|+++...|++ +.++. .+. +.+.|--.+.| .++.. ..|+. .
T Consensus 91 ~~~Gg~~~~~-~dG~~~~~~~~lyd~Af~i~al~~~~-~tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~~~~-~~~~~~~ 167 (402)
T 3gt5_A 91 PATGGYAWTL-CDDRVEDDTNHCYGLAFVMLAYSCGL-KVGIKQAREWMDETWCLLERHFWDAEYGLYKDEA-DAQWNFT 167 (402)
T ss_dssp TTTSCBCSEE-ETTEEEECCEEHHHHHHHHHHHHHHH-HTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEE-CTTCCBC
T ss_pred CCCCcEEEEe-eCCCCCcCCcchHHHHHHHHHHHHHH-HhCChhHHHHHHHHHHHHHHHhcCCcCCCchhhh-CCCCCCC
Confidence 98 9999999 88876556667778899999999954 56632 233 33333212223 22111 11211 0
Q ss_pred CCCC-cceeeccCCchHHHHhcCCCH--HHHHHHHHHHHHHHHhhhcCCCCCCCCch--hh------------------h
Q 003940 487 EFKG-KNVLIELNDSSASASKLGMPL--EKYLNILGECRRKLFDVRSKRPRPHLDDK--VI------------------V 543 (784)
Q Consensus 487 ~f~g-~nvL~~~~~~~~~a~~~g~~~--~~l~~~l~~~r~kL~~~R~~R~~P~lDdK--ii------------------t 543 (784)
...+ +.+.|+.+..-.+.+..|-+. +...++++.+.+++.+....+..-++|.. .+ -
T Consensus 168 ~~~~~n~~m~l~eall~L~~~tgd~~~~~~a~~l~~~~~~~f~~~~~g~l~e~~~~dw~~~~~~~~~~~~~~~~~~~~~p 247 (402)
T 3gt5_A 168 RYRGQNANMHMCEAMLAAYEASGEQRYLERALVLADRITRRQAAKADGLVWEHYDMRWEVDWDYNRDNPKHLFRPWGFQP 247 (402)
T ss_dssp SCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTHHHHTTTTSCCSEECTTSCBCTTTTTTSTTCSSSCSSBCH
T ss_pred CCCCCCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhhCccCCeeEEEECCCCCCccccccCCcccccCcCCCCC
Confidence 1111 122333333333333334211 34445666666777766555544444321 11 1
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCC-CCCCCcch
Q 003940 544 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPS-KAPGFLDD 621 (784)
Q Consensus 544 sWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~-~~~~~leD 621 (784)
+-+.-..|.|.++++++++ ++|++.|+++++++.++.||++.|+++... .+|.+ ...+.+++
T Consensus 248 GH~iE~awlLl~~~~~~~~----------------~~~~~~A~~l~~~~~~~gwd~~~Gg~~~~~d~~g~~~~~~k~~W~ 311 (402)
T 3gt5_A 248 GHQTEWAKLLLILDRYIEV----------------EWLVPVARSLFDVAVARSWDAVRGGLCYGFAPDGTICDDDKYFWV 311 (402)
T ss_dssp HHHHHHHHHHHHHHHHCCC----------------TTHHHHHHHHHHHHHHHHBCTTTCSBCSEECTTSCEEECCEEHHH
T ss_pred ChHHHHHHHHHHHHHhhCc----------------HHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCCeeeCCcceeH
Confidence 2233356789999999987 689999999999999999998878877653 55654 55788999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHH
Q 003940 622 YAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVR 699 (784)
Q Consensus 622 yA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~r 699 (784)
++.+|.|++.||++|||++|+++|+++++.+.++|.|++.|+||+.-..+..++...|.. -+.+|-.+..|+..+++
T Consensus 312 qaEal~a~l~ly~~tgd~~yl~~a~~~~~~~~~~~~D~~~G~W~~~l~~dg~~~~~~k~~-~~K~~YH~~~a~~e~~~ 388 (402)
T 3gt5_A 312 QAESLAAAALLATRSGDERYWQWYDRLWAYAWQHMVDHRYGAWYRLLDGDNRKYNDEKSP-AGKTDYHTMGACHEVLN 388 (402)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTTTCSBCSEECTTSCBCCSCCBC-TTCSSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCCCCCeEEEEECCCCCCCCCCCCC-CCCCCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998776666555433322 34566777776666553
No 6
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=99.92 E-value=4.7e-24 Score=236.67 Aligned_cols=307 Identities=13% Similarity=0.021 Sum_probs=219.2
Q ss_pred HHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHcc---CChHHHHHHHHHHHHHHHhcc
Q 003940 341 VLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLT---KDVFYSYICRDILDYLRRDMI 417 (784)
Q Consensus 341 ~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t---~d~~y~~~A~~t~~fl~~~m~ 417 (784)
+...|.-.. ++++|+++|||++|..+...++| +||||++||++|++|+.||+++ +++.|+++|+++++||.+.|+
T Consensus 19 ~~~~l~~w~-~~~~D~~~GGf~~~~~~dg~~~~-~~k~l~~nar~l~~~a~a~~~~~~~~~~~~l~~A~~~~~fl~~~~~ 96 (402)
T 1fp3_A 19 LDRVMAFWL-EHSHDREHGGFFTCLGRDGRVYD-DLKYVWLQGRQVWMYCRLYRKLERFHRPELLDAAKAGGEFLLRHAR 96 (402)
T ss_dssp HHHHHHHHH-HHSBCTTTSSBCCCBCTTSCBSC-CCEEHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHTB
T ss_pred HHHHHHHhh-ccCCCCCCCCEeeEECCCCCCCC-CccchhhhHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcc
Confidence 444555444 36999999999764444344666 7899999999999999999997 999999999999999999999
Q ss_pred CCCC--ceeecccCCCccccccccccCCceEEechHHHHHHhhhh--HHHHHHHhc-------ccCCCCcCCCCCCCCCC
Q 003940 418 GPGG--EIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH--AILFKEHYY-------LKPTGNCDLSRMSDPHN 486 (784)
Q Consensus 418 ~~~G--gfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~--~~l~~~~f~-------l~~~Gn~e~~~~~dp~g 486 (784)
+++| |||+++|+|+.+.+..+..+.++|++|...|+.+++|+. .+.+.+.+. -.++|.+.. .|+
T Consensus 97 d~~gg~g~~~s~d~dg~~~~~~~~lyd~af~~~a~~~~~~atgd~~~~~~A~~l~~~~~~~~~d~~~G~f~~---~~~-- 171 (402)
T 1fp3_A 97 VAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNELWRVTAEARYQSEAVDMMDQIVHWVREDPSGLGRP---QLP-- 171 (402)
T ss_dssp SSTTSCCBCSEECTTSCEEECCSSSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCGGGGCCC---CCT--
T ss_pred CcCCCCceEEEECCCCCccccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCcccCc---ccc--
Confidence 9874 899999999987766777788999999999999999853 333333333 123343210 000
Q ss_pred CCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHH--HHHHHHHH---HHHHhh
Q 003940 487 EFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNG--LVISSFAR---ASKILK 561 (784)
Q Consensus 487 ~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNa--l~I~ALa~---a~~~~~ 561 (784)
|...+.++|+ .++.+++. ++.+++
T Consensus 172 ---------------------------------------------------~~~~~~~~~~~m~~~~~~l~l~~l~~~~~ 200 (402)
T 1fp3_A 172 ---------------------------------------------------GAVASESMAVPMMLLCLVEQLGEEDEELA 200 (402)
T ss_dssp ---------------------------------------------------TSCCEEETHHHHHHHHHHHHHHTTCHHHH
T ss_pred ---------------------------------------------------CccCCCCcchHHHHHHHHHHHHHHHHhcC
Confidence 0011223465 34456666 556664
Q ss_pred hhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCC--CCcchHHHHHH---HHHHHHHH
Q 003940 562 SEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAP--GFLDDYAFLIS---GLLDLYEF 635 (784)
Q Consensus 562 d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~~~~--~~leDyA~li~---aLL~LYea 635 (784)
+ .|++.|+++++.+.++ .++++|++...+ .++++... +..-.+++.|+ .|++++++
T Consensus 201 ~-----------------~~~~~a~~~~~~~~~~-~~~~~~~~~e~~d~dw~~~~~~~g~~~~pgh~ie~~wlL~~a~~~ 262 (402)
T 1fp3_A 201 G-----------------RYAQLGHWCARRILQH-VQRDGQAVLENVSEDGEELSGCLGRHQNPGHALEAGWFLLRHSSR 262 (402)
T ss_dssp H-----------------HTHHHHHHHHHHHHTT-EETTTTEECSEEETTSCBCCHHHHHEECHHHHHHHHHHHHHHHHH
T ss_pred c-----------------HHHHHHHHHHHHHHHH-hCcCCCeEEEEECCCCCccCCCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 3 4889999999999999 888777765544 33332111 12234565455 79999999
Q ss_pred cCCHHHHHHHHHHHHHH-HHhccccCCCcccccCCCCCccccccccCCC-CCCCChhHHHHHHHHHHHHHhCCCCchHHH
Q 003940 636 GSGTKWLVWAIELQNTQ-DELFLDREGGGYFNTTGEDPSVLLRVKEDHD-GAEPSGNSVSVINLVRLASIVAGSKSDYYR 713 (784)
Q Consensus 636 Tgd~~yL~~A~~L~~~~-~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D-~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~ 713 (784)
+|++.|++.|+++++.+ .++.||++.|+++.+...+..++. ...| ...-.+++-++.+++.|+++|++ +.|.
T Consensus 263 ~~~~~~l~~A~~~~~~~~~~~~~d~~~gg~~~~~~~~g~~~~---~l~d~~~~~W~qaea~~a~l~ly~~tgd---~~yl 336 (402)
T 1fp3_A 263 SGDAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPT---QLEWAMKLWWPHSEAMIAFLMGYSESGD---PALL 336 (402)
T ss_dssp TTCHHHHHHHHHHHTHHHHHHHBCTTTCSBCSCEETTSCCCS---STTTTCEEHHHHHHHHHHHHHHHHHHCC---HHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCccc---cCcCCCcCcHHHHHHHHHHHHHHHHhCC---HHHH
Confidence 99999999999999999 999999875666554222222211 1112 22235777889999999999996 8899
Q ss_pred HHHHHHHHHHHHHHHH
Q 003940 714 QNAEHSLAVFETRLKD 729 (784)
Q Consensus 714 e~A~~~l~~~~~~l~~ 729 (784)
+.|+++.+.+...+..
T Consensus 337 ~~a~~~~~~~~~~f~D 352 (402)
T 1fp3_A 337 RLFYQVAEYTFRQFRD 352 (402)
T ss_dssp HHHHHHHHHHHHHTBC
T ss_pred HHHHHHHHHHHHhCcC
Confidence 9999999988776643
No 7
>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24
Probab=99.90 E-value=9.5e-24 Score=205.64 Aligned_cols=126 Identities=17% Similarity=0.276 Sum_probs=102.4
Q ss_pred ccccccccC-CChhhhcccCCCcccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEE
Q 003940 100 KHTNRLAAE-HSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIK 178 (784)
Q Consensus 100 ~~~NrL~~e-~SpYL~qha~~~v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~Vk 178 (784)
...|||+.. ++||.+++. ..+++|+++||+++|||||+|+++||+||++|+++||+||+|+++||++||.|+
T Consensus 10 ~~~~~l~~lf~~p~~~~~~-------~~~~~Al~~Ak~~~K~vlvd~~a~wC~~C~~me~~vf~d~~V~~~l~~~fv~v~ 82 (153)
T 2dlx_A 10 KKLTTLADLFRPPIDLMHK-------GSFETAKECGQMQNKWLMINIQNVQDFACQCLNRDVWSNEAVKNIIREHFIFWQ 82 (153)
T ss_dssp CCCCCCCCTTSCCTTTSCC-------SCHHHHHHHHHHHTCEEEEEEECSCTTTHHHHHHHTTTCHHHHHHHHHTEEEEE
T ss_pred chhhHHHHhhCCchhhhcc-------cCHHHHHHHHHHcCCeEEEEEECCCCHhHHHHHHHhcCCHHHHHHHHcCeEEEE
Confidence 456999999 999988754 446999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC-CceeccccccCCCCCCCcchHHHHHHHHHHH
Q 003940 179 VDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD-LKPLMGGTYFPPEDKYGRPGFKTILRKVKDA 244 (784)
Q Consensus 179 vD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pd-g~pi~~~tY~p~~~~~~~~~f~~~L~~i~~~ 244 (784)
+|+++ ++ ...+++. +++.|+|+++|++|+ |+++...+++++ ..|++.|+++.+.
T Consensus 83 ~d~~~-~~-~~~l~~~----y~v~~~P~~~fld~~~G~~l~~~~g~~~------~~fl~~L~~~l~~ 137 (153)
T 2dlx_A 83 VYHDS-EE-GQRYIQF----YKLGDFPYVSILDPRTGQKLVEWHQLDV------SSFLDQVTGFLGE 137 (153)
T ss_dssp EESSS-HH-HHHHHHH----HTCCSSSEEEEECTTTCCCCEEESSCCH------HHHHHHHHHHHHH
T ss_pred EecCC-Hh-HHHHHHH----cCCCCCCEEEEEeCCCCcEeeecCCCCH------HHHHHHHHHHHHh
Confidence 99964 33 2333332 278899999999998 877765333443 3687777666433
No 8
>2zbl_A Putative isomerase; N-acyl-D-glucosamine 2-epimerase protein family; HET: BMA; 1.60A {Salmonella typhimurium} PDB: 2afa_A 2rgk_A*
Probab=99.88 E-value=1.4e-21 Score=219.01 Aligned_cols=249 Identities=10% Similarity=0.034 Sum_probs=186.7
Q ss_pred CcccCCCeEEEEecCCCCC-CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCC-CceeecccCC
Q 003940 353 IHDHVGGGFHRYSVDERWH-VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPG-GEIFSAEDAD 430 (784)
Q Consensus 353 i~D~v~GGF~RYsvD~~W~-vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~-Ggfysa~DAD 430 (784)
..|+. ||+ ++|.+|. +|++|||+++||+||++|++||+ ++++.|+++|+++++||.+.|++++ ||||+++|+|
T Consensus 27 ~~d~~--GF~--~ld~~g~~~~~~~k~~~~nar~i~~~a~a~~-~g~~~~l~~A~~~~~fl~~~~~D~~~GG~~~s~d~d 101 (421)
T 2zbl_A 27 AVVPT--GFG--WLGNKGQIKEEMGTHLWITARMLHVYSVAAS-MGRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQ 101 (421)
T ss_dssp GEETT--EEC--CBCTTSCBCGGGCEEHHHHHHHHHHHHHHHH-TTCTTHHHHHHHHHHHHTTTTBCTTTSSBCSEEETT
T ss_pred CcCCC--Ccc--eECCCCCCCCCchhhHHHHHHHHHHHHHHHH-cCChhHHHHHHHHHHHHHHhccCcCCCeEEEEeCCC
Confidence 57987 785 9999996 79999999999999999999998 9999999999999999999999987 9999999887
Q ss_pred CccccccccccCCceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCC
Q 003940 431 SAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMP 510 (784)
Q Consensus 431 S~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~ 510 (784)
+.+.+
T Consensus 102 g~~~~--------------------------------------------------------------------------- 106 (421)
T 2zbl_A 102 GVVDA--------------------------------------------------------------------------- 106 (421)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred CCcCC---------------------------------------------------------------------------
Confidence 63210
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 003940 511 LEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 590 (784)
Q Consensus 511 ~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~ 590 (784)
+|. ..-||++|.|++. ++++++ ++|++.|+++.+
T Consensus 107 ----------------------------~k~-lyd~Af~i~al~~-~~~tg~----------------~~~l~~a~~~~~ 140 (421)
T 2zbl_A 107 ----------------------------SKQ-GYQHFFALLGAAS-AVTTGH----------------PEARKLLDYTIE 140 (421)
T ss_dssp ----------------------------CEE-HHHHHHHHHHHHH-HHTTTC----------------TTHHHHHHHHHH
T ss_pred ----------------------------chh-HHHHHHHHHHHHH-HHHhCC----------------ccHHHHHHHHHH
Confidence 010 1125999999999 899998 789999999999
Q ss_pred HHHHhccccCCCeEEEEe-cCCCC-CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccC
Q 003940 591 FIRRHLYDEQTHRLQHSF-RNGPS-KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTT 668 (784)
Q Consensus 591 ~l~~~l~d~~~G~l~~~~-~dg~~-~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (784)
++.++|+|++.|+++.+. ++++. .....++.+++++.+++.+|++||+++|++.|+++++.+..++.+..+|......
T Consensus 141 ~l~~~~~d~~~Ggf~~~~d~d~~~~~~~~~~n~~m~~~~al~~l~~~tgd~~~~~~A~~~~~~~~~~~~~~~~~~l~~~f 220 (421)
T 2zbl_A 141 VIEKYFWSEEEQMCLESWDEAFSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNEHF 220 (421)
T ss_dssp HHHHHTEETTTTEECCEECTTSCSBCSCEEHHHHHHHHHHHHHHHHTTCCTHHHHHHHHHHHHHCCCCCGGGTTCCCCEE
T ss_pred HHHHHhccCCCCCeeeeecCCCCcccccCCCcHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHhccCCCCchhhhc
Confidence 999999998778887764 33322 1234566777899999999999999999999999999999999886656433222
Q ss_pred CCCCcccccc-ccC-CCCC-----CCChhHHHHHHHHHHHHHhCCCCc--h-HHHHHHHHHHHHHHHHH
Q 003940 669 GEDPSVLLRV-KED-HDGA-----EPSGNSVSVINLVRLASIVAGSKS--D-YYRQNAEHSLAVFETRL 727 (784)
Q Consensus 669 ~~~~~l~~R~-k~~-~D~a-----~PS~Nsv~a~~L~rL~~lt~~~~~--~-~y~e~A~~~l~~~~~~l 727 (784)
.++...+... .+. .+-- .|...--.+-.|++++.++++..+ + .|.+.|.++........
T Consensus 221 ~~~~~~~~~~~~dd~~~r~~~~~~~pgh~iE~~wlLl~~~~~~~~~~~~~~~~~l~~A~~l~~~~~~~g 289 (421)
T 2zbl_A 221 DSQWNPIRDYNKDNPAHRFRAYGGTPGAWIEWGRLMLHLHAALEARFETPPAWLLEDAKGLFHATIRDA 289 (421)
T ss_dssp CTTSCBCTTTTTTSTTCSSSCSSBCHHHHHHHHHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHH
T ss_pred CCccccchhccCCCcccccccCCCCCChHHHHHHHHHHHHHHcccccccchHHHHHHHHHHHHHHHHHh
Confidence 2332222111 111 1111 232222236678999999942102 3 79999998888765443
No 9
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=99.87 E-value=7.2e-21 Score=209.59 Aligned_cols=293 Identities=11% Similarity=0.013 Sum_probs=194.8
Q ss_pred cHHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 003940 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 413 (784)
Q Consensus 334 ~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~ 413 (784)
++..+++|..+++-+.+- ++|. .|||+. ++|.+..+..-.|.+|+||.++.+++++|++|+++.|++.|++++++++
T Consensus 72 ~~~~~~~A~~~~~~l~~~-~~~~-~Gg~~~-~~d~dg~~~~~~~~~~~~af~i~al~~~y~~tg~~~~l~~A~~~~~~i~ 148 (388)
T 2gz6_A 72 RENWLKIARNGAKFLAQH-GRDD-EGNWYF-ALTRGGEPLVQPYNIFSDCFAAMAFSQYALASGEEWAKDVAMQAYNNVL 148 (388)
T ss_dssp CHHHHHHHHHHHHHHHHH-SBCT-TSCBCS-EECTTSCBCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHh-cCCC-CCCEEE-EEcCCCCcccCCcchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 478899999999988773 4555 589985 7887777656689999999999999999999999999999999999999
Q ss_pred HhccCCCCceeecccCCCccccccccccCCceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcce
Q 003940 414 RDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNV 493 (784)
Q Consensus 414 ~~m~~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nv 493 (784)
+.+.+++ |++.....+..+ ..| .+ ...+ -...+.+.|.++.+.
T Consensus 149 ~~~~d~~-g~~~~~~~~~~~-------~~~------~~-~~~~---~~~all~l~~~t~d~------------------- 191 (388)
T 2gz6_A 149 RRKDNPK-GKYTKTYPGTRP-------MKA------LA-VPMI---LANLTLEMEWLLPQE------------------- 191 (388)
T ss_dssp TC---------------CCC-------CEE------TH-HHHH---HHHHHHHTGGGSCHH-------------------
T ss_pred HHhcCCC-cccCcccCCCCC-------CCC------CC-HHHH---HHHHHHHHHHHcCCH-------------------
Confidence 9998764 555432212110 000 00 0000 011112222222100
Q ss_pred eeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCC-----------CchhhhchHHHHHHHHHHHHHHhhh
Q 003940 494 LIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHL-----------DDKVIVSWNGLVISSFARASKILKS 562 (784)
Q Consensus 494 L~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~P~l-----------DdKiitsWNal~I~ALa~a~~~~~d 562 (784)
.+ .+...+.++.+.+++.+....+..+++ ++-+.-+-|.-+++.|.++++++|+
T Consensus 192 --------~~-------~~~A~~~~~~~~~~~~~~~~g~~~e~~~~~w~~~~~~~~~~~~pgh~~e~a~lL~~~~~~tgd 256 (388)
T 2gz6_A 192 --------TL-------ENVLAATVQEVMGDFLDQEQGLMYENVAPDGSHIDCFEGRLINPGHGIEAMWFIMDIARRKND 256 (388)
T ss_dssp --------HH-------HHHHHHHHHHHHHTTEETTTTEECSEECTTSCCCCSTTTTEECHHHHHHHHHHHHHHHHHTTC
T ss_pred --------HH-------HHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCCCCcccCcCCCCHHHHHHHHHHHHHHHcCC
Confidence 00 012223334444444333333333322 2223334456678899999999998
Q ss_pred hhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCC-----CCCCcchHHHHHHHHHHHHHHc
Q 003940 563 EAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSK-----APGFLDDYAFLISGLLDLYEFG 636 (784)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~~-----~~~~leDyA~li~aLL~LYeaT 636 (784)
++|++.|+++++++.++.||++.|++++. ..+|.+. ..+.++.+|.++.|++.+|++|
T Consensus 257 ----------------~~~~~~A~~~~~~~~~~g~d~~~Gg~~~~~~~~g~~~~~~~~~~~~~W~qae~i~a~~~ly~~t 320 (388)
T 2gz6_A 257 ----------------SKTINQAVDVVLNILNFAWDNEYGGLYYFMDAAGHPPQQLEWDQKLWWVHLESLVALAMGYRLT 320 (388)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHBCTTTCSBCSCEETTSCCCSCTTTTCEEHHHHHHHHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHHHHhccCCCCCEEEeecCCCCccccCcCCCcCcHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999886777765 3556653 4466778999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHH
Q 003940 637 SGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 698 (784)
Q Consensus 637 gd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~ 698 (784)
||++|+++|+++++.+.++|.|+++|+||+....+..+....|. .-..+|-.+..++..++
T Consensus 321 gd~~yl~~a~~~~~~~~~~~~D~~~G~w~~~l~~~g~~~~~~~~-~~~K~~YH~~~~~~~~~ 381 (388)
T 2gz6_A 321 GRDACWAWYQKMHDYSWQHFADPEYGEWFGYLNRRGEVLLNLKG-GKWKGCFHVPRAMYLCW 381 (388)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBCTTTSSBCCEECTTSCBSSCBSC-CSSCSSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCcCCCCCceEEeeCCCcCCCCcCCC-CCCCCCcchHHHHHHHH
Confidence 99999999999999999999999999999877666655543222 23346777776655444
No 10
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=99.85 E-value=1.7e-20 Score=208.31 Aligned_cols=253 Identities=13% Similarity=0.084 Sum_probs=191.2
Q ss_pred HHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHH-HHHHHHHc
Q 003940 317 MMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLAN-VYLDAFSL 395 (784)
Q Consensus 317 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~-~ya~Ay~~ 395 (784)
.|...+..++ ++..++.+..-.+.+..+- -.++ .+ +--|-+.+.. +|..+|++
T Consensus 76 ~lw~~ye~Tg-------d~~~~~~a~~~~~~l~~~~-~~~~-------~~-----------~~HD~GF~~~~s~~~~y~l 129 (397)
T 2zzr_A 76 CLWLAYEYNQ-------DKKLKNIAHKNVLSFLNRI-NNRI-------AL-----------DHHDLGFLYTPSCTAEYRI 129 (397)
T ss_dssp HHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH-HTTC-------SC-----------CSSTHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHC-------CHHHHHHHHHHHHHHHHhh-hhcc-------cC-----------CCCCchHHHHHHHHHHHHH
Confidence 4444455543 3677777777667665421 1111 01 1112444444 48999999
Q ss_pred cCChHHHHHHHHHHHHHHHhccCCCCceeecccCCCccccccccccCCceEEechHHHHHHhhhhHHHHHHHhcccCCCC
Q 003940 396 TKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGN 475 (784)
Q Consensus 396 t~d~~y~~~A~~t~~fl~~~m~~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l~~~Gn 475 (784)
|+|+.|++++.+++++|...+ +|.||+..+-+.... ++
T Consensus 130 tg~~~~~~~~~~aA~~L~~r~-~~~~g~iqsw~~~~~-----------------------------------------~~ 167 (397)
T 2zzr_A 130 NGDVKALEATIKAADKLMERY-QEKGGFIQAWGELGY-----------------------------------------KE 167 (397)
T ss_dssp HCCHHHHHHHHHHHHHHHTTE-ETTTTEECCSSSTTC-----------------------------------------GG
T ss_pred hCCHHHHHHHHHHHHHHHHHh-CcCCCEEEecccCCC-----------------------------------------CC
Confidence 999999999999999999988 778787765432110 00
Q ss_pred cCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHH
Q 003940 476 CDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFAR 555 (784)
Q Consensus 476 ~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~ALa~ 555 (784)
++ +.++| |.|-|.+|+.
T Consensus 168 -------------~~--------------------------------------------~~iID------~~mni~~L~~ 184 (397)
T 2zzr_A 168 -------------HY--------------------------------------------RLIID------CLLNIQLLFF 184 (397)
T ss_dssp -------------GC--------------------------------------------EEETT------HHHHTHHHHH
T ss_pred -------------CC--------------------------------------------ceeec------hHhHHHHHHH
Confidence 00 11223 4677999999
Q ss_pred HHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec----CCCCC----CCCCcchH-----
Q 003940 556 ASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR----NGPSK----APGFLDDY----- 622 (784)
Q Consensus 556 a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~----dg~~~----~~~~leDy----- 622 (784)
|++++|+ ++|++.|++.++++.++++++ +|+++|+++ +|++. ..|+++||
T Consensus 185 A~~~~gd----------------~~y~~~A~~ha~~~l~~~~r~-dgs~~h~~~~d~~~G~~~~~~t~qGy~dds~WaRG 247 (397)
T 2zzr_A 185 AYEQTGD----------------EKYRQVAVNHFYASANNVVRD-DSSAFHTFYFDPETGEPLKGVTRQGYSDESSWARG 247 (397)
T ss_dssp HHHHHCC----------------HHHHHHHHHHHHHHHHHTBCT-TSCBCSEEEECTTTCCEEEEECTTSSSTTSCBHHH
T ss_pred HHHHhCC----------------HHHHHHHHHHHHHHHHhCcCC-CCCeEEEEEeeCCCCCcccCCcccccCcchhhHHH
Confidence 9999998 899999999999999999875 579999976 78764 68999996
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCC-cccccCCCCCccccccccCCCCCCCChhHHHHHHHHHH
Q 003940 623 -AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG-GYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL 700 (784)
Q Consensus 623 -A~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~G-gyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL 700 (784)
|++|.|++++|++|+|++||+.|+++.+.+.++| ++.| .||++..++ ++.++++ ||+||++|.+|++|
T Consensus 248 qAw~i~gl~~lY~~T~d~~yL~~A~~la~~~l~~~--~~d~~pywdt~~~~--~~~~~~D------~Sa~aiaA~~Ll~L 317 (397)
T 2zzr_A 248 QAWGIYGIPLSYRKMKDYQQIILFKGMTNYFLNRL--PEDKVSYWDLIFTD--GSGQPRD------TSATATAVCGIHEM 317 (397)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTC--CTTSCCBSBTTCCT--TSCCCBC------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhh--HHhCCccccCCCCC--CCCCcCC------CCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 3444 499876544 3445554 99999999999999
Q ss_pred HHHhCCCCchH--HHHHHHHHHHHHHHHH
Q 003940 701 ASIVAGSKSDY--YRQNAEHSLAVFETRL 727 (784)
Q Consensus 701 ~~lt~~~~~~~--y~e~A~~~l~~~~~~l 727 (784)
++++++...++ |++.|+++|+.+.+..
T Consensus 318 ~~~~~~~~~~~~~Y~~~A~~~l~~l~~~y 346 (397)
T 2zzr_A 318 LKYLPEVDPDKETYKYAMHTMLRSLIEQY 346 (397)
T ss_dssp HTTSCTTCTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCccchhhHHHHHHHHHHHHHHHHHH
Confidence 99997522356 9999999999998754
No 11
>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A
Probab=99.81 E-value=5.4e-20 Score=178.75 Aligned_cols=122 Identities=16% Similarity=0.264 Sum_probs=101.0
Q ss_pred CCCcccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHH
Q 003940 118 HNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQA 197 (784)
Q Consensus 118 ~~~v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~ 197 (784)
...|+|..++++|+++|++++|||||+|+++||++|+.|+..+++++++.+.++.+||.|+||.+ .+++...|
T Consensus 24 ~~~i~W~~~~~~al~~A~~~~KpVlV~F~A~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e-~~~~~~~~------ 96 (151)
T 3ph9_A 24 GDDITWVQTYEEGLFYAQKSKKPLMVIHHLEDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHE-TTDKNLSP------ 96 (151)
T ss_dssp CTTSCCCSSHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSC-CSCGGGCT------
T ss_pred cCCCcchhCHHHHHHHHHHcCCcEEEEEECCCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCC-chhhHhhc------
Confidence 56799999999999999999999999999999999999999999999999999889999999954 44443333
Q ss_pred hcCCCCCCcEEEECCCCceeccc-cccC-CCCCCCcchHHHHHHHHHHHHhhc
Q 003940 198 LYGGGGWPLSVFLSPDLKPLMGG-TYFP-PEDKYGRPGFKTILRKVKDAWDKK 248 (784)
Q Consensus 198 ~~g~~G~P~~vfl~pdg~pi~~~-tY~p-~~~~~~~~~f~~~L~~i~~~~~~~ 248 (784)
++.|+||++|++++|+++... ++.+ +.-.+...+|.++|+.+.++++.-
T Consensus 97 --~v~~~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~al~~~ 147 (151)
T 3ph9_A 97 --DGQYVPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKALRLI 147 (151)
T ss_dssp --TCCCSSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHHHSCC
T ss_pred --CCCCCCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHHHHHH
Confidence 778999999999999999863 3322 111234458999999999887643
No 12
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=99.81 E-value=2.4e-19 Score=199.62 Aligned_cols=158 Identities=13% Similarity=0.052 Sum_probs=135.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC-CCCCCcchHH
Q 003940 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS-KAPGFLDDYA 623 (784)
Q Consensus 545 WNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~-~~~~~leDyA 623 (784)
-||+||++++.|++++++ +.|++.|+++++||.++++|+++|+++++.++|++ ...+.++|||
T Consensus 53 ~n~r~i~~~a~a~~~~g~----------------~~~l~~A~~~~~fl~~~~~d~~~Gg~~~~~~dG~~~~~~~~lyd~A 116 (402)
T 3gt5_A 53 SSTRFVFNYAMAYLQFGT----------------AEYLDAVHHGLSYVRDVHRNPATGGYAWTLCDDRVEDDTNHCYGLA 116 (402)
T ss_dssp HHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHTTBCTTTSCBCSEEETTEEEECCEEHHHHH
T ss_pred HHHHHHHHHHHHHHhhCC----------------hHHHHHHHHHHHHHHHhCccCCCCcEEEEeeCCCCCcCCcchHHHH
Confidence 489999999999999987 89999999999999999999876889998899987 4679999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHH
Q 003940 624 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 703 (784)
Q Consensus 624 ~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~l 703 (784)
|+|.|+++ |.+||+++|++.|+++++.+.++|+|+++|+||.+...+.. + + +...+++|++++++|++|+++
T Consensus 117 f~i~al~~-~~~tgd~~~l~~A~~l~~~i~~~f~d~~~G~~~~~~~~~~~-~-~-----~~~~~n~~m~l~eall~L~~~ 188 (402)
T 3gt5_A 117 FVMLAYSC-GLKVGIKQAREWMDETWCLLERHFWDAEYGLYKDEADAQWN-F-T-----RYRGQNANMHMCEAMLAAYEA 188 (402)
T ss_dssp HHHHHHHH-HHHTTCTTHHHHHHHHHHHHHHHTEETTTTEECCEECTTCC-B-C-----SCEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHhCChhHHHHHHHHHHHHHHHhcCCcCCCchhhhCCCCC-C-C-----CCCCCCHHHHHHHHHHHHHHh
Confidence 99999999 77899999999999999999999999998998865443322 1 1 111234445688899999999
Q ss_pred hCCCCchHHHHHHHHHHHHHHHHHHH
Q 003940 704 VAGSKSDYYRQNAEHSLAVFETRLKD 729 (784)
Q Consensus 704 t~~~~~~~y~e~A~~~l~~~~~~l~~ 729 (784)
|++ +.|+++|+++++.+...+..
T Consensus 189 tgd---~~~~~~a~~l~~~~~~~f~~ 211 (402)
T 3gt5_A 189 SGE---QRYLERALVLADRITRRQAA 211 (402)
T ss_dssp HCC---HHHHHHHHHHHHHHHTHHHH
T ss_pred hCC---HHHHHHHHHHHHHHHHHhhC
Confidence 996 89999999999999877653
No 13
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=99.80 E-value=5.4e-19 Score=195.27 Aligned_cols=154 Identities=21% Similarity=0.219 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec----CCCC----CCCCC
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR----NGPS----KAPGF 618 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~----dg~~----~~~~~ 618 (784)
-|+|.+|+.|++++|+ ++|++.|++.++++.++++++ +|+++|+++ +|.+ ...|+
T Consensus 151 mmni~~L~~A~~~~gd----------------~~y~~~A~~~a~~~l~~~~r~-dgs~~h~~~~D~~tG~~~~~~t~qG~ 213 (377)
T 2ahf_A 151 LLNLPLLLWAGEQTGD----------------PEYRRVAEAHALKSRRFLVRG-DDSSYHTFYFDPENGNAIRGGTHQGN 213 (377)
T ss_dssp GGGHHHHHHHHHHHCC----------------THHHHHHHHHHHHHHHHTBBT-TSCBCSEEEECTTTCCEEEEECSSSS
T ss_pred HHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhCcCC-CCCeEEEEEeeCCCCCeeeCCCcCCc
Confidence 5789999999999998 899999999999999999875 578999987 8877 67899
Q ss_pred cchH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCc-ccccCCCCCccccccccCCCCCCCChhH
Q 003940 619 LDDY------AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG-YFNTTGEDPSVLLRVKEDHDGAEPSGNS 691 (784)
Q Consensus 619 leDy------A~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Gg-yf~t~~~~~~l~~R~k~~~D~a~PS~Ns 691 (784)
++|| |++|.|++++|++|+|++||+.|+++.+.+.++| ++.|+ ||++.. +.++.+++ .||+||
T Consensus 214 ~dds~WaRGqAw~i~gl~~ly~~T~d~~yL~~A~~la~~~l~~~--~~d~~pywd~~~--~~~~~~~~------d~Sa~a 283 (377)
T 2ahf_A 214 TDGSTWTRGQAWGIYGFALNSRYLGNADLLETAKRMARHFLARV--PEDGVVYWDFEV--PQEPSSYR------DSSASA 283 (377)
T ss_dssp STTSCBHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--CTTSSCBSBTTS--CCCTTSCB------CHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHhh--HHhCCcccccCC--CccCCCcc------CCCHHH
Confidence 9996 9999999999999999999999999999999999 34454 888764 33444544 389999
Q ss_pred HHHHHHHHHHHHhCCC--CchHHHHHHHHHHHHHHHHH
Q 003940 692 VSVINLVRLASIVAGS--KSDYYRQNAEHSLAVFETRL 727 (784)
Q Consensus 692 v~a~~L~rL~~lt~~~--~~~~y~e~A~~~l~~~~~~l 727 (784)
++|.+|++|+++++.+ .+++|++.|+++|+.+.+..
T Consensus 284 iaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~~l~~l~~~y 321 (377)
T 2ahf_A 284 ITACGLLEIASQLDESDPERQRFIDAAKTTVTALRDGY 321 (377)
T ss_dssp HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999621 13679999999999997644
No 14
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=99.73 E-value=5.2e-16 Score=170.02 Aligned_cols=243 Identities=16% Similarity=0.089 Sum_probs=182.5
Q ss_pred HHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHH
Q 003940 314 EIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAF 393 (784)
Q Consensus 314 ~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay 393 (784)
.+..|..++..++ ++..++++.++++.+.. ..+|.+ + ...+-|+|.++.++.+||
T Consensus 51 ~~~~l~d~~~~tg-------d~~y~~~a~~~~~~~~~-----~~~~~~----------~---~~~~DD~a~~~la~~~ay 105 (349)
T 3k7x_A 51 LVEVRLDAYLRTK-------KQADLEVAEKTYLHNKN-----RNGGTL----------I---HDFYDDMLWNALAAYRLY 105 (349)
T ss_dssp HHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHH-----HTTSSS----------C---CSBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-------CHHHHHHHHHHHHHHHh-----cCCCCC----------C---ccCccHHHHHHHHHHHHH
Confidence 4566677777654 47888999998887754 112222 1 223567999999999999
Q ss_pred HccCChHHHHHHHHHHHHHHHhccCC--CCceeecccCCCccccccccccCCceEEechHHHHHHhhhhHHHHHHHhccc
Q 003940 394 SLTKDVFYSYICRDILDYLRRDMIGP--GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLK 471 (784)
Q Consensus 394 ~~t~d~~y~~~A~~t~~fl~~~m~~~--~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l~ 471 (784)
++|+++.|++.|++..+++....+++ +|||+|..+.+
T Consensus 106 e~t~~~~yL~~A~~l~~~l~~~~wd~~~gGGi~W~~~~~----------------------------------------- 144 (349)
T 3k7x_A 106 KATGKSIYLEDAQLVWQDLVDTGWNDIMGGGFAWRRPQM----------------------------------------- 144 (349)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHTBCSGGGSCBEEETTEE-----------------------------------------
T ss_pred HHHCCchHHHHHHHHHHHHHHhCCCCCCCCceEecCCCc-----------------------------------------
Confidence 99999999999999999994334454 38888843210
Q ss_pred CCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHH
Q 003940 472 PTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVIS 551 (784)
Q Consensus 472 ~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~ 551 (784)
..+| +| -|++++.
T Consensus 145 -----------------~~kn------------------------------------------------ai--sN~~~~~ 157 (349)
T 3k7x_A 145 -----------------YYKN------------------------------------------------TP--VNAPFII 157 (349)
T ss_dssp -----------------EEEE------------------------------------------------HH--HHHHHHH
T ss_pred -----------------cccc------------------------------------------------hh--hHHHHHH
Confidence 0011 11 3899999
Q ss_pred HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec---CCCCCC-CCCcchHHHHHH
Q 003940 552 SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR---NGPSKA-PGFLDDYAFLIS 627 (784)
Q Consensus 552 ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~---dg~~~~-~~~leDyA~li~ 627 (784)
+++++++++++ ++|++.|+++++++.++++|++ |.++.... +|.... ..+.++|+++|.
T Consensus 158 ~la~l~~~tgd----------------~~Yl~~A~~~~~w~~~~l~d~~-g~v~Dg~~~~~~g~~~~~~~~tYnqg~~l~ 220 (349)
T 3k7x_A 158 LSCWLYNELNE----------------TKYLEWAMKTYEWQTKVLVRED-GFVEDGINRLEDGTIDYEWKFTYNQGVYIG 220 (349)
T ss_dssp HHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHHBCTT-SCBCCEECTTSSSCBCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHhCC----------------HHHHHHHHHHHHHHHhcCCCCC-CeEecCCccCCCCccCCcCeeeHHHHHHHH
Confidence 99999999998 8999999999999999999976 66654322 233222 478889999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCC
Q 003940 628 GLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGS 707 (784)
Q Consensus 628 aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~ 707 (784)
|++.||++|+|++||+.|++|++.+.++|+. +|-.++ +..++..+|.+++++..|.+|+.+++.
T Consensus 221 g~~~LY~~T~d~~yl~~a~~l~~~~~~~f~~--~gi~~~-------------~~~~~D~~sFkgi~~r~L~~l~~~~p~- 284 (349)
T 3k7x_A 221 ANLELYRITKEAIYLDTANKTAAISLKELTE--DGIFKD-------------EGNGGDEGLFKGIFYRYFTDLIEETAN- 284 (349)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHHEE--TTEECC-------------CCSSSGGGGHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHHHHhcc--CCcccC-------------CCCCccHHHHHHHHHHHHHHHHHHCCh-
Confidence 9999999999999999999999999999973 454432 112466799999999999999999975
Q ss_pred CchHHHHHHHHHHHHHH
Q 003940 708 KSDYYRQNAEHSLAVFE 724 (784)
Q Consensus 708 ~~~~y~e~A~~~l~~~~ 724 (784)
+.|+...+...++..
T Consensus 285 --~~~~~~l~~sa~aa~ 299 (349)
T 3k7x_A 285 --KTYRDFVLNSCQILV 299 (349)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHH
Confidence 566666555555443
No 15
>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}
Probab=99.73 E-value=1.2e-17 Score=163.04 Aligned_cols=126 Identities=17% Similarity=0.303 Sum_probs=99.1
Q ss_pred cCCCcccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccH---------
Q 003940 117 AHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDV--------- 187 (784)
Q Consensus 117 a~~~v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi--------- 187 (784)
......|....+++++.|+.+||||+|+|+++||++|+.|+.++|+++++.+.++++|+.|+||.++.+++
T Consensus 26 ~~~~~~~~~~~~~~~~~a~~~gk~vlv~F~A~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~ 105 (172)
T 3f9u_A 26 TNEVHAKFDDYDLGMEYARQHNKPVMLDFTGYGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMEN 105 (172)
T ss_dssp --CCCCCBSCHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEET
T ss_pred CcccccchhhHHHHHHHHHHcCCeEEEEEECCCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhc
Confidence 34456777777999999999999999999999999999999999999999999998999999999877644
Q ss_pred ---------HHHHHHHHHHhcCCCCCCcEEEECCCCceeccc-cccCCCCCCCcchHHHHHHHHHHHHhh
Q 003940 188 ---------DKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVKDAWDK 247 (784)
Q Consensus 188 ---------~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~~-tY~p~~~~~~~~~f~~~L~~i~~~~~~ 247 (784)
...........+++.|+|+++|+|++|+++... +|.+. .+.|.+.|+++.+.+++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~~~~~G~~~~-----~~~l~~~l~~~l~~~~~ 170 (172)
T 3f9u_A 106 GTERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPLNKSYAYDED-----ISKYINFLQTGLENYRK 170 (172)
T ss_dssp TEEEEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBSSCCBCSCCC-----HHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEEeeccCCCCC-----HHHHHHHHHHHHHHhhc
Confidence 111111111223899999999999999998763 45541 23788888888777765
No 16
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=99.72 E-value=1.2e-17 Score=161.06 Aligned_cols=138 Identities=17% Similarity=0.257 Sum_probs=108.6
Q ss_pred CcccccccccCCChhhhcccCCCcccccchHHHHHHHhhcCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHhcccEE
Q 003940 98 RNKHTNRLAAEHSPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVS 176 (784)
Q Consensus 98 ~~~~~NrL~~e~SpYL~qha~~~v~W~~~~~eal~~Ak~e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln~~FV~ 176 (784)
|+..+||+..+.|++|++.+...++| ....++++.++.++|||+|.|+ ++||++|+.|....++++++++..+.+|+.
T Consensus 8 ~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~a~~~gk~vlv~F~ga~wC~~C~~~~p~l~~~~~~~~~~~~~~~~ 86 (154)
T 2ju5_A 8 HSAARRRASGENLQQTRPIAAANLQW-ESYAEALEHSKQDHKPIGLFFTGSDWCMWCIKMQDQILQSSEFKHFAGVHLHM 86 (154)
T ss_dssp ---CHHHHCCCCSSCCCSSCCCCCCE-ECHHHHHHHHHHHCCCEEEEEECTTTCHHHHHHHHHTTTSHHHHHHHHHHCEE
T ss_pred hHHHHhhhhhhcchhhhhcccCCCCC-CCHHHHHHHHHhCCCeEEEEEeCCCCCHhHHHHHHHHhcCHHHHHHhcCcEEE
Confidence 45678999999999999999999999 7779999999999999999998 999999999999999999999998889999
Q ss_pred EEEcCCCCccHHHH----HHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHH
Q 003940 177 IKVDREERPDVDKV----YMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 241 (784)
Q Consensus 177 VkvD~ee~pdi~~~----y~~~~q~~~g~~G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i 241 (784)
|+||.++.+++... -....+ .+++.|+|+++|+|++|+++...++.|.. .+.|.+.|+++
T Consensus 87 v~vd~~~~~~~~~~~~~~~~~l~~-~~~v~~~Pt~~~~d~~G~~~~~~G~~~~~----~~~l~~~l~~~ 150 (154)
T 2ju5_A 87 VEVDFPQKNHQPEEQRQKNQELKA-QYKVTGFPELVFIDAEGKQLARMGFEPGG----GAAYVSKVKSA 150 (154)
T ss_dssp EEEECCSSCCCCHHHHHHHHHHHH-HTTCCSSSEEEEECTTCCEEEEECCCTTC----HHHHHHHHHHH
T ss_pred EEecCccccCCChhhHhhHHHHHH-HcCCCCCCEEEEEcCCCCEEEEecCCCCC----HHHHHHHHHHH
Confidence 99999876621100 011122 23899999999999999998754455322 23455555544
No 17
>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}
Probab=99.54 E-value=1.1e-14 Score=135.64 Aligned_cols=113 Identities=21% Similarity=0.402 Sum_probs=89.2
Q ss_pred cccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcC---CCCccHHHHHHHHHHH
Q 003940 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR---EERPDVDKVYMTYVQA 197 (784)
Q Consensus 121 v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~---ee~pdi~~~y~~~~q~ 197 (784)
++.....+++++.|++++|||+|.|+++||++|+.|.. .|+++++++.++++++.++||. ++.+++.+.|
T Consensus 12 ~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~-~l~~~~~~~~~~~~~~~~~vd~~~~~~~~~l~~~~------ 84 (133)
T 3fk8_A 12 ADAWTQVKKALAAGKRTHKPTLLVFGANWCTDCRALDK-SLRNQKNTALIAKHFEVVKIDVGNFDRNLELSQAY------ 84 (133)
T ss_dssp CCHHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHTSHHHHHHHHHHCEEEEEECTTTTSSHHHHHHT------
T ss_pred cChHhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH-HhCCHHHHHHhcCCEEEEEEeCCcccchHHHHHHh------
Confidence 34445569999999999999999999999999999987 6999999999988999999999 7777776665
Q ss_pred hcCC---CCCCcEEEECCCCceecc--ccccCCCCCCCcchHHHHHHHHH
Q 003940 198 LYGG---GGWPLSVFLSPDLKPLMG--GTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 198 ~~g~---~G~P~~vfl~pdg~pi~~--~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
++ .|+|+++|++++|+++.. ++.++.....+...+.++|+++.
T Consensus 85 --~v~~~~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~ 132 (133)
T 3fk8_A 85 --GDPIQDGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT 132 (133)
T ss_dssp --TCGGGGCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred --CCccCCccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence 78 899999999999999865 22333222233345666665543
No 18
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}
Probab=99.22 E-value=2.9e-15 Score=138.72 Aligned_cols=107 Identities=27% Similarity=0.426 Sum_probs=87.1
Q ss_pred CcccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCC--CCccHHHHHHHHHHH
Q 003940 120 PVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYVQA 197 (784)
Q Consensus 120 ~v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~e--e~pdi~~~y~~~~q~ 197 (784)
.|+|..+ +++++.|+.++|||+|.|+++||++|+.|....+.++++++.++.+++.++||.+ +.+++.+.|
T Consensus 2 ~i~w~~~-~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~------ 74 (130)
T 2lst_A 2 SLRWYPY-PEALALAQAHGRMVMVYFHSEHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDTPEGQELARRY------ 74 (130)
Confidence 4789999 9999999999999999999999999999999999999999999888999999984 456665555
Q ss_pred hcCCCCCCcEEEECCC-Cce--ecc-ccccCCCCCCCcchHHHHHHHH
Q 003940 198 LYGGGGWPLSVFLSPD-LKP--LMG-GTYFPPEDKYGRPGFKTILRKV 241 (784)
Q Consensus 198 ~~g~~G~P~~vfl~pd-g~p--i~~-~tY~p~~~~~~~~~f~~~L~~i 241 (784)
++.|+|+++|++++ |++ +.. .++.+++ .|.+.|+++
T Consensus 75 --~v~~~Pt~~~~d~~~G~~~~~~~~~G~~~~~------~l~~~l~~~ 114 (130)
T 2lst_A 75 --RVPGTPTFVFLVPKAGAWEEVGRLFGSRPRA------EFLKELRQV 114 (130)
Confidence 78899999999975 887 543 2344443 355555444
No 19
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=1.9e-13 Score=126.24 Aligned_cols=92 Identities=24% Similarity=0.342 Sum_probs=78.2
Q ss_pred Ccccc-cchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCC--CccHHHHHHHHHH
Q 003940 120 PVDWF-AWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQ 196 (784)
Q Consensus 120 ~v~W~-~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee--~pdi~~~y~~~~q 196 (784)
.+.|. ...++++..++.++|||+|.|+++||++|+.|....++++++++.++.+++.++||.++ .+++.+.|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~----- 82 (130)
T 2kuc_A 8 GIAFRELSFPEALKRAEVEDKLLFVDCFTTWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKY----- 82 (130)
T ss_dssp CCCCBCCCHHHHHHHHHHHSSCEEEEECCTTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHT-----
T ss_pred CCCcccCCHHHHHHHHHhcCCeEEEEEECCCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHc-----
Confidence 35553 23588999999999999999999999999999998889999999999899999999984 34444443
Q ss_pred HhcCCCCCCcEEEECCCCceecc
Q 003940 197 ALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 197 ~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
++.|+|+++|++++|+++..
T Consensus 83 ---~v~~~Pt~~~~d~~G~~~~~ 102 (130)
T 2kuc_A 83 ---GVHAYPTLLFINSSGEVVYR 102 (130)
T ss_dssp ---TCCSSCEEEEECTTSCEEEE
T ss_pred ---CCCCCCEEEEECCCCcEEEE
Confidence 88999999999999998864
No 20
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=99.45 E-value=1e-12 Score=151.58 Aligned_cols=148 Identities=16% Similarity=0.198 Sum_probs=121.6
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHH
Q 003940 544 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYA 623 (784)
Q Consensus 544 sWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA 623 (784)
.-|++||.|||.|++++.+. .++.++||+.|+++.+|+.++.. ++ +++|+ .++.|||
T Consensus 250 ~~agl~aAALA~Asrvf~d~-----------~~~a~~~L~aA~~a~~fa~~~~~-----~y---~~~g~---~~~~De~- 306 (586)
T 3h7l_A 250 QGGGVAIAALAAASRLGVHG-----------EYDQQKYRNAAENGYWHLKEHNT-----QY---LNDGE---ENIIDEY- 306 (586)
T ss_dssp GTHHHHHHHHHHHTTSSSCS-----------SSCHHHHHHHHHHHHHHHHHHHH-----HH---STTSC---CCHHHHH-
T ss_pred CcHHHHHHHHHHHhcccCCC-----------CcChHHHHHHHHHHHHHHHhcCc-----cc---cCCCC---ccchhHH-
Confidence 34899999999999995431 12237899999999999998742 11 23443 5889999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHH
Q 003940 624 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 703 (784)
Q Consensus 624 ~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~l 703 (784)
+++.|+++||++|||+.||+.|+++.+.+.++|++.+.|+||++..++ |.|+.+|++ .|++.+.+|++|..+
T Consensus 307 ~~~WAA~eLy~ATgd~~YL~~a~~~a~~l~~~~~~~~~~g~~w~~~d~-----~~r~~~d~a---~~gl~~iaLl~l~~~ 378 (586)
T 3h7l_A 307 CALLASVELFKATKETRYLEESRLWAQRLVARQMSDEQIQHFWSANQD-----GSRPYFHAA---EAGLPTIALCEYLAI 378 (586)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTEECCSSCSSEEBSSSS-----SSSBCCCTT---TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccCCccCCCcCCCccc-----CCccccccc---ccHHHHHHHHHhhhh
Confidence 999999999999999999999999999999999988888899887654 678888987 689999999999999
Q ss_pred hCCCCchHHHHHHHHHHHHHHH
Q 003940 704 VAGSKSDYYRQNAEHSLAVFET 725 (784)
Q Consensus 704 t~~~~~~~y~e~A~~~l~~~~~ 725 (784)
+++ ..++++++++|....+
T Consensus 379 ~~d---~~~~~~a~~~i~~~~d 397 (586)
T 3h7l_A 379 EDD---SVQTESVKCIVNRACE 397 (586)
T ss_dssp CCS---TTTTHHHHHHHHHHHH
T ss_pred cCC---hHHHHHHHHHHHHHhh
Confidence 985 4567777777776655
No 21
>3k7x_A LIN0763 protein; Q92DQ0, LKR23, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.89A {Listeria innocua}
Probab=99.43 E-value=4.8e-12 Score=138.59 Aligned_cols=152 Identities=16% Similarity=0.021 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC-CCeEEEEecCCCCCCCCCcchHHHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ-THRLQHSFRNGPSKAPGFLDDYAFL 625 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~-~G~l~~~~~dg~~~~~~~leDyA~l 625 (784)
+.++.++.++|+++++ ++||+.|+++++++....|++. +|++++.... ..-+..-.++.+
T Consensus 95 a~~~la~~~aye~t~~----------------~~yL~~A~~l~~~l~~~~wd~~~gGGi~W~~~~---~~~knaisN~~~ 155 (349)
T 3k7x_A 95 LWNALAAYRLYKATGK----------------SIYLEDAQLVWQDLVDTGWNDIMGGGFAWRRPQ---MYYKNTPVNAPF 155 (349)
T ss_dssp HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHTBCSGGGSCBEEETTE---EEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHCC----------------chHHHHHHHHHHHHHHhCCCCCCCCceEecCCC---ccccchhhHHHH
Confidence 7888999999999998 8999999999999954555653 6888875321 111223378999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCC--CCCChhHHHHHHHHHHHHH
Q 003940 626 ISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDG--AEPSGNSVSVINLVRLASI 703 (784)
Q Consensus 626 i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~--a~PS~Nsv~a~~L~rL~~l 703 (784)
+.+++.||++|||+.|+++|+++++.+.++++|++ |.+|+...... ....++ .---..++++..+..|++.
T Consensus 156 ~~~la~l~~~tgd~~Yl~~A~~~~~w~~~~l~d~~-g~v~Dg~~~~~------~g~~~~~~~~tYnqg~~l~g~~~LY~~ 228 (349)
T 3k7x_A 156 IILSCWLYNELNETKYLEWAMKTYEWQTKVLVRED-GFVEDGINRLE------DGTIDYEWKFTYNQGVYIGANLELYRI 228 (349)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHBCTT-SCBCCEECTTS------SSCBCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCCCC-CeEecCCccCC------CCccCCcCeeeHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987 77877432110 000111 1222567899999999999
Q ss_pred hCCCCchHHHHHHHHHHHHHHHHH
Q 003940 704 VAGSKSDYYRQNAEHSLAVFETRL 727 (784)
Q Consensus 704 t~~~~~~~y~e~A~~~l~~~~~~l 727 (784)
|++ +.|+++|+++++.+...+
T Consensus 229 T~d---~~yl~~a~~l~~~~~~~f 249 (349)
T 3k7x_A 229 TKE---AIYLDTANKTAAISLKEL 249 (349)
T ss_dssp HCC---HHHHHHHHHHHHHHHHHH
T ss_pred hCc---HHHHHHHHHHHHHHHHHh
Confidence 986 889999999999887655
No 22
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=99.36 E-value=6.7e-13 Score=124.39 Aligned_cols=109 Identities=20% Similarity=0.255 Sum_probs=78.9
Q ss_pred cccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003940 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (784)
Q Consensus 121 v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g 200 (784)
+.+....++.++.++ +|||+|.|+++||++|+.|+...|+++++++.++ +++.++||.++..+-.... ++. ++
T Consensus 16 ~~~~~~~~~~l~~~~--~k~vlv~F~a~wC~~C~~~~~~~~~~~~l~~~~~-~~~~~~vd~~~~~~~~~~l---~~~-~~ 88 (134)
T 2fwh_A 16 IKTVDELNQALVEAK--GKPVMLDLYADWCVACKEFEKYTFSDPQVQKALA-DTVLLQANVTANDAQDVAL---LKH-LN 88 (134)
T ss_dssp CCSHHHHHHHHHHHT--TSCEEEEEECTTCHHHHHHHHHTTTSHHHHHHTT-TSEEEEEECTTCCHHHHHH---HHH-TT
T ss_pred ecCHHHHHHHHHHhc--CCcEEEEEECCCCHHHHHHHHHhcCCHHHHHHhc-CcEEEEEeCCCCcchHHHH---HHH-cC
Confidence 333334455555443 9999999999999999999999999999999886 5999999997544332222 222 38
Q ss_pred CCCCCcEEEECCCCcee--cc-ccccCCCCCCCcchHHHHHHHHH
Q 003940 201 GGGWPLSVFLSPDLKPL--MG-GTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 201 ~~G~P~~vfl~pdg~pi--~~-~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
+.|+|+++|++++|+++ .. .++.+++ .|.+.|+++.
T Consensus 89 v~~~Pt~~~~d~~G~~v~~~~~~G~~~~~------~l~~~l~~~~ 127 (134)
T 2fwh_A 89 VLGLPTILFFDGQGQEHPQARVTGFMDAE------TFSAHLRDRQ 127 (134)
T ss_dssp CCSSSEEEEECTTSCBCGGGCBCSCCCHH------HHHHHHHHC-
T ss_pred CCCCCEEEEECCCCCEeeeeeeeeccCHH------HHHHHHHhcC
Confidence 99999999999999997 33 3455533 5666665543
No 23
>2ahf_A Unsaturated glucuronyl hydrolase; alpha6/alpha6 barrel, glycoside hydrolase family 88; 1.52A {Bacillus SP} PDB: 2ahg_A* 2fv0_A* 2fv1_A* 2d5j_A 1vd5_A 2fuz_A
Probab=99.35 E-value=3.5e-11 Score=132.95 Aligned_cols=253 Identities=15% Similarity=0.087 Sum_probs=178.5
Q ss_pred cHHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCC-CCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHH
Q 003940 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVP-HFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYL 412 (784)
Q Consensus 334 ~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vP-HFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl 412 (784)
+++.++.+...-+.++. -++. .|||.+ +-+.. ..| .--.+..||=++|.+++.|+++++|+.|+++|.+.++++
T Consensus 106 ~~~~~~~~~~aA~~L~~--r~~~-~~g~i~-sw~~~-~~~~~~~~~iID~mmni~~L~~A~~~~gd~~y~~~A~~~a~~~ 180 (377)
T 2ahf_A 106 DESARKLALDAADVLMR--RWRA-DAGIIQ-AWGPK-GDPENGGRIIIDCLLNLPLLLWAGEQTGDPEYRRVAEAHALKS 180 (377)
T ss_dssp CHHHHHHHHHHHHHHHT--TEET-TTTEEC-CBSST-TCTTTTTEEEGGGGGGHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--hCCC-CCCeEE-eccCC-CCCCCCceEEechHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 47899999999998887 4664 567777 32210 012 122688899999999999999999999999999999999
Q ss_pred HHhccCCCCceeecccCCCccccccccccCCceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcc
Q 003940 413 RRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKN 492 (784)
Q Consensus 413 ~~~m~~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~n 492 (784)
++.+..++|.+|+...-|.. +|.
T Consensus 181 l~~~~r~dgs~~h~~~~D~~--------------------------------------------------------tG~- 203 (377)
T 2ahf_A 181 RRFLVRGDDSSYHTFYFDPE--------------------------------------------------------NGN- 203 (377)
T ss_dssp HHHTBBTTSCBCSEEEECTT--------------------------------------------------------TCC-
T ss_pred HHhCcCCCCCeEEEEEeeCC--------------------------------------------------------CCC-
Confidence 99999888988875332220 111
Q ss_pred eeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCC
Q 003940 493 VLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFP 572 (784)
Q Consensus 493 vL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~ 572 (784)
++|.. ....+.||..=+--+|.+|.||+.+|+++++
T Consensus 204 ~~~~~----------------------------------t~qG~~dds~WaRGqAw~i~gl~~ly~~T~d---------- 239 (377)
T 2ahf_A 204 AIRGG----------------------------------THQGNTDGSTWTRGQAWGIYGFALNSRYLGN---------- 239 (377)
T ss_dssp EEEEE----------------------------------CSSSSSTTSCBHHHHHHHHHHHHHHHHHHTC----------
T ss_pred eeeCC----------------------------------CcCCcCCcchhHHHHHHHHHHHHHHHHHHCC----------
Confidence 01100 0223566653344489999999999999998
Q ss_pred CCCCChHHHHHHHHHHHHHHHHhccccCCCe-EEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcC-----CHHHHHHHH
Q 003940 573 VVGSDRKEYMEVAESAASFIRRHLYDEQTHR-LQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGS-----GTKWLVWAI 646 (784)
Q Consensus 573 ~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~-l~~~~~dg~~~~~~~leDyA~li~aLL~LYeaTg-----d~~yL~~A~ 646 (784)
++||+.|+++++++++++ +++|. ++.+..+..+..+.-++..|.++.||++|++.++ +++|++.|+
T Consensus 240 ------~~yL~~A~~la~~~l~~~--~~d~~pywd~~~~~~~~~~~d~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~ 311 (377)
T 2ahf_A 240 ------ADLLETAKRMARHFLARV--PEDGVVYWDFEVPQEPSSYRDSSASAITACGLLEIASQLDESDPERQRFIDAAK 311 (377)
T ss_dssp ------HHHHHHHHHHHHHHHTTC--CTTSSCBSBTTSCCCTTSCBCHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHHhh--HHhCCcccccCCCccCCCccCCCHHHHHHHHHHHHHHhcCccccchHHHHHHHH
Confidence 899999999999999998 34554 5544322222233456778999999999999996 788999999
Q ss_pred HHHHHHHHhccccC---CCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHh
Q 003940 647 ELQNTQDELFLDRE---GGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIV 704 (784)
Q Consensus 647 ~L~~~~~~~F~D~~---~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt 704 (784)
++++.+.+.+.... .+|......-+ .......|..+|.+..-.+++|.||...+
T Consensus 312 ~~l~~l~~~y~~~~~~~~~g~L~h~~~~----~~~~~~~d~~~~ygDy~~~Eal~r~~~~~ 368 (377)
T 2ahf_A 312 TTVTALRDGYAERDDGEAEGFIRRGSYH----VRGGISPDDYTIWGDYYYLEALLRLERGV 368 (377)
T ss_dssp HHHHHHHHHTBCCCCSSCCCSBSCBCSB----TTTTBSSSBCBHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCCCCCCCeEEeccccc----CCCCCCCCcCccHHHHHHHHHHHHHHcCC
Confidence 99999988875432 12222211100 00111246777888888999999998744
No 24
>2zzr_A Unsaturated glucuronyl hydrolase; alpha barrel; 1.75A {Streptococcus agalactiae} PDB: 3anj_A 3ank_A* 3ani_A*
Probab=99.33 E-value=2.4e-11 Score=134.98 Aligned_cols=211 Identities=11% Similarity=0.079 Sum_probs=159.7
Q ss_pred cHHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 003940 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 413 (784)
Q Consensus 334 ~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~ 413 (784)
+++.++.+...-+.++. -++ -.|||.+ +.+..- .|.-..+..||-+-|.+++.|+++++|+.|+++|.+.+++++
T Consensus 132 ~~~~~~~~~~aA~~L~~--r~~-~~~g~iq-sw~~~~-~~~~~~~iID~~mni~~L~~A~~~~gd~~y~~~A~~ha~~~l 206 (397)
T 2zzr_A 132 DVKALEATIKAADKLME--RYQ-EKGGFIQ-AWGELG-YKEHYRLIIDCLLNIQLLFFAYEQTGDEKYRQVAVNHFYASA 206 (397)
T ss_dssp CHHHHHHHHHHHHHHHT--TEE-TTTTEEC-CSSSTT-CGGGCEEETTHHHHTHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH--HhC-cCCCEEE-ecccCC-CCCCCceeechHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 47899999999999977 564 4678887 443211 122237889999999999999999999999999999999999
Q ss_pred HhccCCCCceeecccCCCccccccccccCCceEEechHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcce
Q 003940 414 RDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNV 493 (784)
Q Consensus 414 ~~m~~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nv 493 (784)
+.+..++|+.|+...-|.. +|+.
T Consensus 207 ~~~~r~dgs~~h~~~~d~~--------------------------------------------------------~G~~- 229 (397)
T 2zzr_A 207 NNVVRDDSSAFHTFYFDPE--------------------------------------------------------TGEP- 229 (397)
T ss_dssp HHTBCTTSCBCSEEEECTT--------------------------------------------------------TCCE-
T ss_pred HhCcCCCCCeEEEEEeeCC--------------------------------------------------------CCCc-
Confidence 9999888999986554421 0110
Q ss_pred eeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCC
Q 003940 494 LIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPV 573 (784)
Q Consensus 494 L~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~ 573 (784)
.+. .....+.||..=+--+|.+|.||+.+|++++|
T Consensus 230 ~~~----------------------------------~t~qGy~dds~WaRGqAw~i~gl~~lY~~T~d----------- 264 (397)
T 2zzr_A 230 LKG----------------------------------VTRQGYSDESSWARGQAWGIYGIPLSYRKMKD----------- 264 (397)
T ss_dssp EEE----------------------------------ECTTSSSTTSCBHHHHHHHHHHHHHHHHHHCC-----------
T ss_pred ccC----------------------------------CcccccCcchhhHHHHHHHHHHHHHHHHHHCC-----------
Confidence 000 00223567763333489999999999999998
Q ss_pred CCCChHHHHHHHHHHHHHHHHhccccCCCe-EEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCC---HH--HHHHHHH
Q 003940 574 VGSDRKEYMEVAESAASFIRRHLYDEQTHR-LQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSG---TK--WLVWAIE 647 (784)
Q Consensus 574 ~~~~~~~yle~A~~~a~~l~~~l~d~~~G~-l~~~~~dg~~~~~~~leDyA~li~aLL~LYeaTgd---~~--yL~~A~~ 647 (784)
++||+.|+++++++.++| +++|+ ++.+..++.+..+.=++..|.++.||++|++.|++ .+ |++.|++
T Consensus 265 -----~~yL~~A~~la~~~l~~~--~~d~~pywdt~~~~~~~~~~D~Sa~aiaA~~Ll~L~~~~~~~~~~~~~Y~~~A~~ 337 (397)
T 2zzr_A 265 -----YQQIILFKGMTNYFLNRL--PEDKVSYWDLIFTDGSGQPRDTSATATAVCGIHEMLKYLPEVDPDKETYKYAMHT 337 (397)
T ss_dssp -----HHHHHHHHHHHHHHHHTC--CTTSCCBSBTTCCTTSCCCBCHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHhh--HHhCCccccCCCCCCCCCcCCCCHHHHHHHHHHHHHHhcCccchhhHHHHHHHHH
Confidence 899999999999999998 34454 66553333333333467789999999999999987 78 9999999
Q ss_pred HHHHHHHhccc
Q 003940 648 LQNTQDELFLD 658 (784)
Q Consensus 648 L~~~~~~~F~D 658 (784)
+++.+...+..
T Consensus 338 ~l~~l~~~y~~ 348 (397)
T 2zzr_A 338 MLRSLIEQYSN 348 (397)
T ss_dssp HHHHHHHHTBC
T ss_pred HHHHHHHHHhc
Confidence 99999887654
No 25
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=99.28 E-value=1.1e-11 Score=120.76 Aligned_cols=91 Identities=25% Similarity=0.427 Sum_probs=67.7
Q ss_pred CCCcccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHH
Q 003940 118 HNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQA 197 (784)
Q Consensus 118 ~~~v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~ 197 (784)
...++|..+ +++++.+..++|||+|+|+++||++|+.|.. .|++-......+-.||.|.+|.++.+ +...|
T Consensus 27 ~~~i~w~~~-~~~~~~~~~~~k~vlv~F~a~WC~~C~~~~p-~l~~~~~~~~~~~~~~~v~~d~~~~~-~~~~~------ 97 (164)
T 1sen_A 27 GDHIHWRTL-EDGKKEAAASGLPLMVIIHKSWCGACKALKP-KFAESTEISELSHNFVMVNLEDEEEP-KDEDF------ 97 (164)
T ss_dssp CTTSCBCCH-HHHHHHHHHHTCCEEEEEECTTCHHHHHHHH-HHHTCHHHHHHHTTSEEEEEEGGGSC-SCGGG------
T ss_pred cccccccCH-HHHHHHHHhcCCeEEEEEECCCCHHHHHHHH-HHHHHHHHhhcCCeEEEEEecCCchH-HHHHh------
Confidence 457999554 7999999999999999999999999999987 55542222223446888777765332 33333
Q ss_pred hcCC--CCCCcEEEECCCCceecc
Q 003940 198 LYGG--GGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 198 ~~g~--~G~P~~vfl~pdg~pi~~ 219 (784)
++ .++|+++|++++|+++..
T Consensus 98 --~~~~~~~Pt~~~~d~~G~~~~~ 119 (164)
T 1sen_A 98 --SPDGGYIPRILFLDPSGKVHPE 119 (164)
T ss_dssp --CTTCSCSSEEEEECTTSCBCTT
T ss_pred --cccCCcCCeEEEECCCCCEEEE
Confidence 44 569999999999998864
No 26
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=99.27 E-value=3.9e-11 Score=132.89 Aligned_cols=177 Identities=12% Similarity=0.120 Sum_probs=137.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhcC------CCC--CCCCchhhhchH---HHHHHHHHHHHHHhhhhhhhhcccCCCCC
Q 003940 507 LGMPLEKYLNILGECRRKLFDVRSK------RPR--PHLDDKVIVSWN---GLVISSFARASKILKSEAESAMFNFPVVG 575 (784)
Q Consensus 507 ~g~~~~~l~~~l~~~r~kL~~~R~~------R~~--P~lDdKiitsWN---al~I~ALa~a~~~~~d~~~~~~~~~~~~~ 575 (784)
.+++.+++.+.|+.++++|.+.|.. |.+ |.+|+|++++|| |+++.+|.++|+++||
T Consensus 20 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~f~~~~~~~~~~d~k~~~~W~Wt~G~~~~gl~~~ye~Tgd------------- 86 (382)
T 3pmm_A 20 RFIARSELQALIRNVTQNLVNIKDESGQFLLRLDDGRVIDTKGWAGWEWTHGVGLYGIYQYYQQTGD------------- 86 (382)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCCCTTCTTCEECTTSCEECSSSTTSCSHHHHHHHHHHHHHHHHHCC-------------
T ss_pred hcCCHHHHHHHHHHHHHHHHhccCccccccccCCccccccCCCCcCccccHHHHHHHHHHHHHHHCC-------------
Confidence 3678899999999999999999876 655 789999999999 9999999999999998
Q ss_pred CChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 003940 576 SDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (784)
Q Consensus 576 ~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~ 655 (784)
++|++.|++..+.+.+. +|.+ ...+|++++ .+++++|+.|||++|++.|+++.+.+.+.
T Consensus 87 ---~~y~~~a~~~~~~~~~~-----~~~~------------~n~D~~~~~-~~l~~lY~~Tgd~~Yl~~a~~~ad~L~~~ 145 (382)
T 3pmm_A 87 ---IEMRDIIDRWFADRFAE-----GATT------------KNVNTMAPF-LTLAYRFEETGRMAYLPWLESWAEWAMHE 145 (382)
T ss_dssp ---HHHHHHHHHHHHHHHHH-----CCCC------------CCTTTTTTH-HHHHHHHHHHCCGGGHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHcC-----CCCc------------CcccchHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 89999999987755432 2211 235566665 48999999999999999999999999888
Q ss_pred ccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 003940 656 FLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLK 728 (784)
Q Consensus 656 F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~ 728 (784)
+.+.+.|+|+....+.+ ....-..| +.-+.+..|.++++++|+ ++|.+.|.+.+..+...+.
T Consensus 146 ~~r~~~Ggf~~~~~~~~---~~~~~WiD-----gl~M~~p~La~~~~~tgd---~~y~d~A~~q~~~~~~~l~ 207 (382)
T 3pmm_A 146 MPRTEQGGMQHMTLAEE---NHQQMWDD-----TLMMTVLPLAKIGKLLNR---PQYVEEATYQFLLHVQNLM 207 (382)
T ss_dssp SCBCGGGCBCCCCSSCC---CTTEEETT-----HHHHTHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHB
T ss_pred CCCCcCCCeeeecCCCC---CCCcEEec-----chhhhHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHcc
Confidence 88878888876421110 00001112 233566678899999996 8899999888887777764
No 27
>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*
Probab=99.25 E-value=2.4e-12 Score=119.56 Aligned_cols=91 Identities=11% Similarity=0.025 Sum_probs=73.0
Q ss_pred CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCC--ccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER--PDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~--pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~ 215 (784)
.+++||+|+++||++|+.|+++++++.++.+.+. .+..++||+++. +++...| ++.|+||+||++ +|+
T Consensus 18 ~~~~LV~F~A~wC~~Ck~~~~~i~~~~~~~a~~~-~~~l~~vdv~~~~~~~la~~~--------~V~g~PT~i~f~-~G~ 87 (116)
T 3dml_A 18 AELRLLMFEQPGCLYCARWDAEIAPQYPLTDEGR-AAPVQRLQMRDPLPPGLELAR--------PVTFTPTFVLMA-GDV 87 (116)
T ss_dssp -CEEEEEEECTTCHHHHHHHHHTTTTGGGSHHHH-HSCEEEEETTSCCCTTCBCSS--------CCCSSSEEEEEE-TTE
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhhHHHhhhcc-cceEEEEECCCCCchhHHHHC--------CCCCCCEEEEEE-CCE
Confidence 4689999999999999999999999988876664 467777887764 3555444 788999999999 999
Q ss_pred eeccc-cccCCCCCCCcchHHHHHHHHHHH
Q 003940 216 PLMGG-TYFPPEDKYGRPGFKTILRKVKDA 244 (784)
Q Consensus 216 pi~~~-tY~p~~~~~~~~~f~~~L~~i~~~ 244 (784)
++... +|++++ .|.+.|+++...
T Consensus 88 ev~Ri~G~~~~~------~f~~~L~~~l~~ 111 (116)
T 3dml_A 88 ESGRLEGYPGED------FFWPMLARLIGQ 111 (116)
T ss_dssp EEEEEECCCCHH------HHHHHHHHHHHH
T ss_pred EEeeecCCCCHH------HHHHHHHHHHhh
Confidence 99874 677765 799999887654
No 28
>2ec4_A FAS-associated factor 1; UAS domain, protein FAF1, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=1.8e-11 Score=121.80 Aligned_cols=119 Identities=14% Similarity=0.155 Sum_probs=90.6
Q ss_pred cccc-chHHHHHHH----hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHH--
Q 003940 122 DWFA-WGEEAFAEA----RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY-- 194 (784)
Q Consensus 122 ~W~~-~~~eal~~A----k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~-- 194 (784)
.|+. .+++|+++| |+++|++||+++.+||.+|++|.+++|.|++|.++||+|||....|++.... .+.++..
T Consensus 34 ~F~~gs~~~Al~~A~~~~k~e~K~LlVyLhs~~~~~~~~f~~~~L~~~~V~~~l~~nfV~w~~dv~~~e~-~~~~~~~~~ 112 (178)
T 2ec4_A 34 VFFIGSLEAAFQEAFYVKARDRKLLAIYLHHDESVLTNVFCSQMLCAESIVSYLSQNFITWAWDLTKDSN-RARFLTMCN 112 (178)
T ss_dssp CCCCSCHHHHHHTTTSSCTTTCCEEEEEEECSSCSHHHHHHHHTTTCHHHHHHHHHTEEEEEEECCSHHH-HHHHHHHHH
T ss_pred CeeeCCHHHHHHHHHhhhhhhCcEEEEEEeCCCCccHHHHHHHhcCCHHHHHHHHcCEEEEEEeCCCchh-hhhhhhhhh
Confidence 3443 469999999 9999999999999999999999999999999999999999999999985332 2222111
Q ss_pred -------HHHh--cCCCCCCcEEEECCCC---ceecc-ccccCCCCCCCcchHHHHHHHHHHHHhh
Q 003940 195 -------VQAL--YGGGGWPLSVFLSPDL---KPLMG-GTYFPPEDKYGRPGFKTILRKVKDAWDK 247 (784)
Q Consensus 195 -------~q~~--~g~~G~P~~vfl~pdg---~pi~~-~tY~p~~~~~~~~~f~~~L~~i~~~~~~ 247 (784)
.+.. .+..++|+.+|+++.+ +.+.. .|+.+++ .|++.|..+.+.|+.
T Consensus 113 ~~~g~~~a~~~~~~~~~~~P~l~ii~~~~~~~~vl~~~~G~~~~~------~ll~~L~~~~e~~~~ 172 (178)
T 2ec4_A 113 RHFGSVVAQTIRTQKTDQFPLFLIIMGKRSSNEVLNVIQGNTTVD------ELMMRLMAAMEIFTA 172 (178)
T ss_dssp HHTCHHHHHHHHHSCSTTCSEEEEECCCSSCCCEEEEECSCCCHH------HHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhcCCCCCCeEEEEEcCCCceEEEEEEeCCCCHH------HHHHHHHHHHHHhhH
Confidence 1111 3788999999999875 33333 2455544 688888877777663
No 29
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.19 E-value=5e-11 Score=134.02 Aligned_cols=202 Identities=13% Similarity=0.100 Sum_probs=144.0
Q ss_pred cceeeccCCchHHHHhcCC-CHHHHHHHHHHHHHHHHhhhcCCC------CCCCC--------------chhhhchHHHH
Q 003940 491 KNVLIELNDSSASASKLGM-PLEKYLNILGECRRKLFDVRSKRP------RPHLD--------------DKVIVSWNGLV 549 (784)
Q Consensus 491 ~nvL~~~~~~~~~a~~~g~-~~~~l~~~l~~~r~kL~~~R~~R~------~P~lD--------------dKiitsWNal~ 549 (784)
+.-||+..+ ++-.-+|. +.+++++.|+.+.+.|-+.-..|. ...+| -.....-+|+|
T Consensus 10 ~~~~~~~~~--~~~~~~~~~~~~~i~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~Gv~ 87 (445)
T 3k11_A 10 NTPLHLLQP--AYQGTYGDLTPEQVKKDIDRVFAYIDKETPARVVDKNTGKVITDYTAMGDEAQLERGAFRLASYEWGVT 87 (445)
T ss_dssp TCCGGGSCC--CCSSCCSCCCHHHHHHHHHHHHHHHHHTSCCCEEETTTCCEECCTTTCCTTEEECCCSSCTTSHHHHHH
T ss_pred CCchhhcCC--CCCCCCCcCCHHHHHHHHHHHHHHHhccCcceeecCCCCceeccccccccccccccCCcccCccCHHHH
Confidence 334666554 24444565 678899999988888876211110 00111 11111346999
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhc------cccCCCeEEEEecCCCCCCCCCcchHH
Q 003940 550 ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHL------YDEQTHRLQHSFRNGPSKAPGFLDDYA 623 (784)
Q Consensus 550 I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l------~d~~~G~l~~~~~dg~~~~~~~leDyA 623 (784)
+.||+++++++|| ++|++.|++..+||.+++ ++. +|++.+.++++ . ..++++||+
T Consensus 88 l~gl~~ay~~Tgd----------------~kY~~ya~~~~dfi~~~~p~~~~~~~~-~G~l~~~~r~~-~-~~~~LDD~g 148 (445)
T 3k11_A 88 YSALIAAAETTGD----------------KRYTDYVQNRFRFLAEVAPHFKRVYEE-KGKTDSQLLQI-L-TPHALDDAG 148 (445)
T ss_dssp HHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCCCHHHHHH-H-SCCSGGGTH
T ss_pred HHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHhccchhhhhhhc-cCCeecccccc-c-CCCcchhHH
Confidence 9999999999998 899999999999998753 353 57777666665 2 378999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHH
Q 003940 624 FLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASI 703 (784)
Q Consensus 624 ~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~l 703 (784)
+++.+++++|++|+|++|++.|.++++.+.++|.+.++|+|+.......++.+ |+ .-+..--|.+++.+
T Consensus 149 ~~~~~Li~lY~~T~d~~yl~~a~~~ad~L~~~~pRt~~Ggf~h~~~~~~q~Wi------D~-----lyM~~pfla~~~~~ 217 (445)
T 3k11_A 149 AVCTAMIKLRLKDESLPVDGLIQNYFDFIINKEYRLADGTFARNRPQRNTLWL------DD-----MFMGIPAVAQMSRY 217 (445)
T ss_dssp HHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHTSCBCTTCCBCBCSSSTTEEET------HH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCCCCceeecCCCCCceEe------cc-----hhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888998874321112111 21 11344557789999
Q ss_pred hCCCCchH--HHHHHHHHHHHHHHHH
Q 003940 704 VAGSKSDY--YRQNAEHSLAVFETRL 727 (784)
Q Consensus 704 t~~~~~~~--y~e~A~~~l~~~~~~l 727 (784)
+++ ++ |.+.|.+.+..+...+
T Consensus 218 tgd---~~~~y~d~A~~q~~~~~~~l 240 (445)
T 3k11_A 218 DKE---AKNKYLAEAVKQFLQFADRM 240 (445)
T ss_dssp CGG---GHHHHHHHHHHHHHHHHHHH
T ss_pred HCC---cchHHHHHHHHHHHHHHHhc
Confidence 986 67 8888877766666655
No 30
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=99.17 E-value=4.9e-11 Score=106.70 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=70.9
Q ss_pred cccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003940 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (784)
Q Consensus 121 v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g 200 (784)
|.+...++++++.+++++||++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| +
T Consensus 7 i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~ 75 (112)
T 1ep7_A 7 IDSKAAWDAQLAKGKEEHKPIVVDFTATWCGPCKMIAPL-F--ETLSNDYAGKVIFLKVDVDAVAAVAEAA--------G 75 (112)
T ss_dssp ECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTSEEEEEETTTTHHHHHHH--------T
T ss_pred ecCHHHHHHHHHhhcccCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHcCCCeEEEEEECCchHHHHHHc--------C
Confidence 334445577888877789999999999999999999864 4 4677777668999999999988887766 8
Q ss_pred CCCCCcEEEECCCCceecc
Q 003940 201 GGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 201 ~~G~P~~vfl~pdg~pi~~ 219 (784)
+.++|+++|+ ++|+++..
T Consensus 76 v~~~Pt~~~~-~~G~~~~~ 93 (112)
T 1ep7_A 76 ITAMPTFHVY-KDGVKADD 93 (112)
T ss_dssp CCBSSEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-ECCeEEEE
Confidence 8999998877 79998764
No 31
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=99.13 E-value=1.2e-10 Score=104.24 Aligned_cols=103 Identities=21% Similarity=0.215 Sum_probs=77.6
Q ss_pred cccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003940 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (784)
Q Consensus 121 v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g 200 (784)
|.+...+++.++.|+.++|+++|.|+++||++|+.|... + .++++.+. ++..++||.++.+++.+.| +
T Consensus 9 i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~-~v~~~~v~~~~~~~~~~~~--------~ 76 (113)
T 1ti3_A 9 CHTVDTWKEHFEKGKGSQKLIVVDFTASWCPPCKMIAPI-F--AELAKKFP-NVTFLKVDVDELKAVAEEW--------N 76 (113)
T ss_dssp ECSHHHHHHHHHHHTTSSSEEEEEEECSSCHHHHHHHHH-H--HHHHHHCS-SEEEEEEETTTCHHHHHHH--------H
T ss_pred eccHHHHHHHHHHhhhcCCeEEEEEECCCCHHHHHHHHH-H--HHHHHhCC-CcEEEEEEccccHHHHHhC--------C
Confidence 444445688888888899999999999999999999863 3 34555443 7999999999888887766 7
Q ss_pred CCCCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHH
Q 003940 201 GGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 201 ~~G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
+.++|+++|+ .+|+++.......+ +.+.+.|+++.
T Consensus 77 v~~~Pt~~~~-~~G~~~~~~~g~~~------~~l~~~l~~~~ 111 (113)
T 1ti3_A 77 VEAMPTFIFL-KDGKLVDKTVGADK------DGLPTLVAKHA 111 (113)
T ss_dssp CSSTTEEEEE-ETTEEEEEEECCCT------THHHHHHHHHH
T ss_pred CCcccEEEEE-eCCEEEEEEecCCH------HHHHHHHHHhh
Confidence 8899999988 78998765322232 35777766554
No 32
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=99.13 E-value=1.6e-10 Score=102.92 Aligned_cols=83 Identities=16% Similarity=0.177 Sum_probs=69.3
Q ss_pred cchHHHHHHHh-hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003940 125 AWGEEAFAEAR-KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (784)
Q Consensus 125 ~~~~eal~~Ak-~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G 203 (784)
....+.++.+. +++|+++|.|+++||+.|+.|.... .++++.+..++..++||.++.+++.+.| ++.+
T Consensus 8 ~l~~~~~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~~---~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~ 76 (111)
T 3gnj_A 8 KLDTNTFEQLIYDEGKACLVMFSRKNCHVCQKVTPVL---EELRLNYEESFGFYYVDVEEEKTLFQRF--------SLKG 76 (111)
T ss_dssp ECCHHHHHHHHTTSCCCEEEEEECSSCHHHHHHHHHH---HHHHHHTTTTSEEEEEETTTCHHHHHHT--------TCCS
T ss_pred ecCHHHHHHHHHhcCCEEEEEEeCCCChhHHHHHHHH---HHHHHHcCCceEEEEEECCcChhHHHhc--------CCCc
Confidence 34467777776 8899999999999999999998633 5777777767999999999998887666 8999
Q ss_pred CCcEEEECCCCceecc
Q 003940 204 WPLSVFLSPDLKPLMG 219 (784)
Q Consensus 204 ~P~~vfl~pdg~pi~~ 219 (784)
+|+++|+ .+|+++..
T Consensus 77 ~Pt~~~~-~~g~~~~~ 91 (111)
T 3gnj_A 77 VPQILYF-KDGEYKGK 91 (111)
T ss_dssp SCEEEEE-ETTEEEEE
T ss_pred CCEEEEE-ECCEEEEE
Confidence 9999999 78988754
No 33
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=99.13 E-value=4.6e-11 Score=109.86 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=63.7
Q ss_pred HHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEc--CCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003940 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVD--REERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (784)
Q Consensus 133 ~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD--~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl 210 (784)
.+..++|+++|.|+++||++|+.|.... .++++.+..++..++|| .++.+++.+.| ++.|+|+++|+
T Consensus 21 ~~~~~~k~~lv~f~a~wC~~C~~~~~~l---~~~~~~~~~~v~~~~v~~~~d~~~~~~~~~--------~v~~~Pt~~~~ 89 (126)
T 2l57_A 21 EEAKEGIPTIIMFKTDTCPYCVEMQKEL---SYVSKEREGKFNIYYARLEEEKNIDLAYKY--------DANIVPTTVFL 89 (126)
T ss_dssp TTCCSSSCEEEEEECSSCHHHHHHHHHH---HHHHHHSSSSCEEEEEETTSSHHHHHHHHT--------TCCSSSEEEEE
T ss_pred HHHhCCCcEEEEEECCCCccHHHHHHHH---HHHHHHhcCCeEEEEEeCCCCchHHHHHHc--------CCcceeEEEEE
Confidence 4567899999999999999999998743 57777776789999999 77766666554 88999999999
Q ss_pred CCCCceecc
Q 003940 211 SPDLKPLMG 219 (784)
Q Consensus 211 ~pdg~pi~~ 219 (784)
+++|+++..
T Consensus 90 ~~~G~~~~~ 98 (126)
T 2l57_A 90 DKEGNKFYV 98 (126)
T ss_dssp CTTCCEEEE
T ss_pred CCCCCEEEE
Confidence 999998764
No 34
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=99.12 E-value=7e-11 Score=107.11 Aligned_cols=77 Identities=17% Similarity=0.244 Sum_probs=62.0
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
++.++. ..+|+|+|+|+|+||+.|+.|... | .++++.. .+.+.++||.++.|++.+.| ++.|+||+
T Consensus 12 ~~~l~~--~~~k~vvv~F~a~wC~~C~~~~p~-~--~~~~~~~-~~~~~~~vd~d~~~~l~~~~--------~V~~~PT~ 77 (105)
T 3zzx_A 12 TKQLNE--AGNKLVVIDFYATWCGPCKMIAPK-L--EELSQSM-SDVVFLKVDVDECEDIAQDN--------QIACMPTF 77 (105)
T ss_dssp HHHHHH--TTTSEEEEEEECTTCHHHHHHHHH-H--HHHHHHC-TTEEEEEEETTTCHHHHHHT--------TCCBSSEE
T ss_pred HHHHHh--cCCCEEEEEEECCCCCCccCCCcc-h--hhhhhcc-CCeEEEEEecccCHHHHHHc--------CCCeecEE
Confidence 444443 358999999999999999999863 3 3566655 36899999999999988776 89999998
Q ss_pred EEECCCCceecc
Q 003940 208 VFLSPDLKPLMG 219 (784)
Q Consensus 208 vfl~pdg~pi~~ 219 (784)
+|+ .+|+++..
T Consensus 78 ~~~-~~G~~v~~ 88 (105)
T 3zzx_A 78 LFM-KNGQKLDS 88 (105)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-ECCEEEEE
Confidence 888 68998865
No 35
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=99.11 E-value=1.7e-10 Score=103.89 Aligned_cols=79 Identities=16% Similarity=0.157 Sum_probs=66.2
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
.+-|+++.+++|+|+|.|+++||++|+.|.... .++++.+. ++..++||.++.+++.+.| ++.|+|++
T Consensus 14 ~~~f~~~~~~~k~vlv~f~a~wC~~C~~~~p~l---~~l~~~~~-~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~ 81 (109)
T 3f3q_A 14 ASEFDSAIAQDKLVVVDFYATWCGPCKMIAPMI---EKFSEQYP-QADFYKLDVDELGDVAQKN--------EVSAMPTL 81 (109)
T ss_dssp HHHHHHHTTSSSCEEEEEECTTCHHHHHHHHHH---HHHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHhcCCEEEEEEECCcCHhHHHHHHHH---HHHHHHCC-CCEEEEEECCCCHHHHHHc--------CCCccCEE
Confidence 678888999999999999999999999998633 35555553 5888999999988877666 89999999
Q ss_pred EEECCCCceecc
Q 003940 208 VFLSPDLKPLMG 219 (784)
Q Consensus 208 vfl~pdg~pi~~ 219 (784)
+|++ +|+++..
T Consensus 82 ~~~~-~G~~~~~ 92 (109)
T 3f3q_A 82 LLFK-NGKEVAK 92 (109)
T ss_dssp EEEE-TTEEEEE
T ss_pred EEEE-CCEEEEE
Confidence 9997 8998765
No 36
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=99.11 E-value=1.3e-10 Score=106.18 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=65.0
Q ss_pred HHHHHH-HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAFAE-ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal~~-Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
++-+.+ ..+.+||++|.|+++||++|+.|... + .++++.+..++..++||.++.+++.+.| ++.++|+
T Consensus 20 ~~~f~~~v~~~~k~vlv~f~a~~C~~C~~~~~~-l--~~~~~~~~~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt 88 (119)
T 1w4v_A 20 GPDFQDRVVNSETPVVVDFHAQWCGPCKILGPR-L--EKMVAKQHGKVVMAKVDIDDHTDLAIEY--------EVSAVPT 88 (119)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTSSEEEEEETTTTHHHHHHT--------TCCSSSE
T ss_pred hhhHHHHHHcCCCcEEEEEECCCCHHHHHHHHH-H--HHHHHHhcCCeEEEEEeCCCCHHHHHHc--------CCCcccE
Confidence 444444 46789999999999999999999863 3 4677777667999999999888776665 8999999
Q ss_pred EEEECCCCceecc
Q 003940 207 SVFLSPDLKPLMG 219 (784)
Q Consensus 207 ~vfl~pdg~pi~~ 219 (784)
++|+ ++|+++..
T Consensus 89 ~~~~-~~G~~~~~ 100 (119)
T 1w4v_A 89 VLAM-KNGDVVDK 100 (119)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-eCCcEEEE
Confidence 9999 89998754
No 37
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=99.11 E-value=1.3e-10 Score=108.73 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=65.1
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~p 216 (784)
.+|||+|.|+++||++|+.|.... .++++.++.++..++||.++.+++.+.| ++.|+|+++|++++|++
T Consensus 50 ~~k~vlv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~~~~g~~ 118 (141)
T 3hxs_A 50 GDKPAIVDFYADWCGPCKMVAPIL---EELSKEYAGKIYIYKVNVDKEPELARDF--------GIQSIPTIWFVPMKGEP 118 (141)
T ss_dssp CSSCEEEEEECTTCTTHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEECSSSCC
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhcCceEEEEEECCCCHHHHHHc--------CCCCcCEEEEEeCCCCE
Confidence 589999999999999999998644 6788888778999999999998887766 89999999999999998
Q ss_pred eccccccC
Q 003940 217 LMGGTYFP 224 (784)
Q Consensus 217 i~~~tY~p 224 (784)
+...++.+
T Consensus 119 ~~~~G~~~ 126 (141)
T 3hxs_A 119 QVNMGALS 126 (141)
T ss_dssp EEEESCCC
T ss_pred EEEeCCCC
Confidence 74434443
No 38
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=99.10 E-value=3.4e-09 Score=116.80 Aligned_cols=258 Identities=12% Similarity=0.095 Sum_probs=174.9
Q ss_pred CChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHH
Q 003940 310 PRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVY 389 (784)
Q Consensus 310 P~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~y 389 (784)
++...+.-|+..+..++ +++.++.+....+.+.. . +|... |..+ + | |+-.+..++
T Consensus 42 ~~G~~~~gl~~~y~~tg-------d~~y~~~a~~~~~~~~~-----~-~g~l~-~~~~------~----l-Dd~~~g~~l 96 (373)
T 1nc5_A 42 HQGVFLCGVLRLWEATG-------EKRYFEYAKAYADLLID-----D-NGNLL-FRRD------E----L-DAIQAGLIL 96 (373)
T ss_dssp HHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHBC-----T-TCCBC-CCTT------C----G-GGTGGGGGH
T ss_pred hHHHHHHHHHHHHHHhC-------CHHHHHHHHHHHHHHhC-----C-CCccc-CCCC------C----c-chHHHHHHH
Confidence 44445556667666553 47889999999888742 1 22221 2211 1 3 332367799
Q ss_pred HHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeecccCCCccccccccccCCceEEechHHHHHHhhhhHHHHHHHhc
Q 003940 390 LDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYY 469 (784)
Q Consensus 390 a~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~ 469 (784)
+++|++|+|+.|++.|....++|......++|||+...+
T Consensus 97 l~lY~~Tgd~~yl~~a~~la~~l~~~~r~~~G~fw~~~~----------------------------------------- 135 (373)
T 1nc5_A 97 FPLYEQTKDERYVKAAKRLRSLYGTLNRTSEGGFWHKDG----------------------------------------- 135 (373)
T ss_dssp HHHHHHHCCHHHHHHHHHHHGGGGTSCBCTTSCBCSCTT-----------------------------------------
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhccCCCCCCeeccCC-----------------------------------------
Confidence 999999999999999999999997755455677754200
Q ss_pred ccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHH
Q 003940 470 LKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLV 549 (784)
Q Consensus 470 l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~ 549 (784)
+ .++ + ..|. ..+.
T Consensus 136 -----~-------------~~~--~-----------------------------------------w~D~------l~m~ 148 (373)
T 1nc5_A 136 -----Y-------------PYQ--M-----------------------------------------WLDG------LYMG 148 (373)
T ss_dssp -----S-------------TTE--E-----------------------------------------ETHH------HHHH
T ss_pred -----C-------------CCe--E-----------------------------------------EeCc------HHHH
Confidence 0 000 0 0111 1245
Q ss_pred HHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecC-CCC---------CCCCCc
Q 003940 550 ISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRN-GPS---------KAPGFL 619 (784)
Q Consensus 550 I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~d-g~~---------~~~~~l 619 (784)
+..|+++++++|| ++|++.|.+.+....++++|+++|.++|.+.. ++. ......
T Consensus 149 ~p~L~~l~~~tgd----------------~~y~d~A~~~~~~~~~~l~D~~tGl~~h~~~~~~~~~w~d~~tg~~~~~Wa 212 (373)
T 1nc5_A 149 GPFALKYANLKQE----------------TELFDQVVLQESLMRKHTKDAKTGLFYHAWDEAKKMPWANEETGCSPEFWA 212 (373)
T ss_dssp HHHHHHHHHHHTC----------------THHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTCCSTTSCTTTCBCSCCBH
T ss_pred HHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHhcCCCCCCEEeecCCccccccccccCCCCCCccc
Confidence 7789999999998 79999999999999999999999988887642 211 001122
Q ss_pred chHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHH
Q 003940 620 DDYAFLISGLLDLYEF-----GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV 694 (784)
Q Consensus 620 eDyA~li~aLL~LYea-----Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a 694 (784)
-.+++++.|++++|+. ++++.|++.++++.+.+..+. ++++|.|.. .-+++...- .-..-|+.++++
T Consensus 213 Rg~gW~~~gl~~~l~~lp~~~~~~~~~~~~~~~~a~~l~~~q-~~~dG~W~~-~ld~~~~~~------~~~EsSatA~~a 284 (373)
T 1nc5_A 213 RSIGWYVMSLADMIEELPKKHPNRHVWKNTLQDMIKSICRYQ-DKETGLWYQ-IVDKGDRSD------NWLESSGSCLYM 284 (373)
T ss_dssp HHHHHHHHHHHHHGGGSCTTCHHHHHHHHHHHHHHHHHHTTS-CTTTSCCBS-BTTCTTSTT------CCBCHHHHHHHH
T ss_pred chHhHHHHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhc-CCCCCceee-ecCCCCCCC------CCccccHHHHHH
Confidence 2789999999999998 688899999999999998876 655664432 111111000 012347888888
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 003940 695 INLVRLASIVAGSKSDYYRQNAEHSLAVFETR 726 (784)
Q Consensus 695 ~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~ 726 (784)
-.|+++.+.--- +++|+..|++.++.+...
T Consensus 285 y~l~~g~~~g~l--~~~Y~~~a~k~~~~l~~~ 314 (373)
T 1nc5_A 285 YAIAKGINKGYL--DRAYETTLLKAYQGLIQH 314 (373)
T ss_dssp HHHHHHHHHTSS--CGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCC--cHHHHHHHHHHHHHHHHh
Confidence 899988654211 267999999999988664
No 39
>1nc5_A Hypothetical protein YTER; structural genomics, helix barrel, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: a.102.1.6 PDB: 2d8l_A* 2gh4_A*
Probab=99.10 E-value=2.1e-10 Score=126.52 Aligned_cols=142 Identities=20% Similarity=0.244 Sum_probs=112.2
Q ss_pred hhch---HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCC
Q 003940 542 IVSW---NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGF 618 (784)
Q Consensus 542 itsW---Nal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~ 618 (784)
-++| ||+++.+|+++++++|| ++|++.|++.++++. ++ +|.+. ++.+.
T Consensus 36 ~~~W~w~~G~~~~gl~~~y~~tgd----------------~~y~~~a~~~~~~~~----~~-~g~l~--~~~~~------ 86 (373)
T 1nc5_A 36 ANRWHYHQGVFLCGVLRLWEATGE----------------KRYFEYAKAYADLLI----DD-NGNLL--FRRDE------ 86 (373)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHB----CT-TCCBC--CCTTC------
T ss_pred CCCcchhHHHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHh----CC-CCccc--CCCCC------
Confidence 5789 99999999999999998 899999999999874 32 35443 44332
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHH
Q 003940 619 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLV 698 (784)
Q Consensus 619 leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~ 698 (784)
++||+ ++.++++||++|||++|++.|+++.+.+..+| +.+.|+||.+..... +...|+ .-+++..|.
T Consensus 87 lDd~~-~g~~ll~lY~~Tgd~~yl~~a~~la~~l~~~~-r~~~G~fw~~~~~~~------~~w~D~-----l~m~~p~L~ 153 (373)
T 1nc5_A 87 LDAIQ-AGLILFPLYEQTKDERYVKAAKRLRSLYGTLN-RTSEGGFWHKDGYPY------QMWLDG-----LYMGGPFAL 153 (373)
T ss_dssp GGGTG-GGGGHHHHHHHHCCHHHHHHHHHHHGGGGTSC-BCTTSCBCSCTTSTT------EEETHH-----HHHHHHHHH
T ss_pred cchHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-CCCCCCeeccCCCCC------eEEeCc-----HHHHHHHHH
Confidence 78888 67899999999999999999999999997766 777788877532211 112232 125677899
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHHHHHHH
Q 003940 699 RLASIVAGSKSDYYRQNAEHSLAVFETRLK 728 (784)
Q Consensus 699 rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~ 728 (784)
+++++||+ ++|.+.|.+.+..+...+.
T Consensus 154 ~l~~~tgd---~~y~d~A~~~~~~~~~~l~ 180 (373)
T 1nc5_A 154 KYANLKQE---TELFDQVVLQESLMRKHTK 180 (373)
T ss_dssp HHHHHHTC---THHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHCC---HHHHHHHHHHHHHHHHHhc
Confidence 99999996 7899999999999988874
No 40
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=99.10 E-value=4.4e-11 Score=105.78 Aligned_cols=79 Identities=20% Similarity=0.341 Sum_probs=66.7
Q ss_pred HHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003940 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~v 208 (784)
+.++.+.+++||++|.|+++||++|+.|... + .++++.+.+++..++||.++.+++.+.| ++.|+|+++
T Consensus 8 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~~-l--~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~v~~~Pt~~ 76 (105)
T 1nsw_A 8 ANFQQAIQGDGPVLVDFWAAWCGPCRMMAPV-L--EEFAEAHADKVTVAKLNVDENPETTSQF--------GIMSIPTLI 76 (105)
T ss_dssp TTHHHHHSSSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHSTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEE
T ss_pred HhHHHHHhCCCcEEEEEECCCCHHHHHHHHH-H--HHHHHHhcCCcEEEEEECcCCHHHHHHc--------CCccccEEE
Confidence 4466777889999999999999999999864 3 5677777767999999999888877665 889999999
Q ss_pred EECCCCceecc
Q 003940 209 FLSPDLKPLMG 219 (784)
Q Consensus 209 fl~pdg~pi~~ 219 (784)
++ ++|+++..
T Consensus 77 ~~-~~G~~~~~ 86 (105)
T 1nsw_A 77 LF-KGGRPVKQ 86 (105)
T ss_dssp EE-ETTEEEEE
T ss_pred EE-eCCeEEEE
Confidence 99 89998764
No 41
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=99.10 E-value=1.3e-10 Score=108.87 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=62.1
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~ 215 (784)
+.+||++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|+++|++++|+
T Consensus 36 ~~~k~~lv~f~a~wC~~C~~~~~~-l--~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~~~G~ 104 (136)
T 2l5l_A 36 EGDKPAIVDFYADWCGPCKMVAPI-L--DELAKEYDGQIVIYKVDTEKEQELAGAF--------GIRSIPSILFIPMEGK 104 (136)
T ss_dssp CCSSCEEEEEECTTSHHHHHHHHH-H--HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSCEEEEECSSSC
T ss_pred cCCCEEEEEEECCcCHHHHHHHHH-H--HHHHHHhcCCEEEEEEeCCCCHHHHHHc--------CCCCCCEEEEECCCCc
Confidence 368999999999999999999863 3 4677777777999999999888777665 8899999999999999
Q ss_pred eec
Q 003940 216 PLM 218 (784)
Q Consensus 216 pi~ 218 (784)
++.
T Consensus 105 ~~~ 107 (136)
T 2l5l_A 105 PEM 107 (136)
T ss_dssp CEE
T ss_pred EEE
Confidence 873
No 42
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=99.09 E-value=1.1e-10 Score=103.41 Aligned_cols=80 Identities=18% Similarity=0.245 Sum_probs=66.4
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
.+.++.+.+++||++|.|+++||++|+.|.. .+ .++++.+..++..+.||.++.+++.+.| ++.|+|++
T Consensus 11 ~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~-~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~i~~~Pt~ 79 (109)
T 3tco_A 11 EENFDEVIRNNKLVLVDCWAEWCAPCHLYEP-IY--KKVAEKYKGKAVFGRLNVDENQKIADKY--------SVLNIPTT 79 (109)
T ss_dssp TTTHHHHHHHSSEEEEEEECTTCHHHHHHHH-HH--HHHHHHTTTTSEEEEEETTTCHHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHhcCCeEEEEEECCCCHHHHhhhH-HH--HHHHHHhCCCceEEEEccccCHHHHHhc--------CcccCCEE
Confidence 3455666667999999999999999999986 33 4567777667999999999998887766 89999999
Q ss_pred EEECCCCceecc
Q 003940 208 VFLSPDLKPLMG 219 (784)
Q Consensus 208 vfl~pdg~pi~~ 219 (784)
+|+ ++|+++..
T Consensus 80 ~~~-~~g~~~~~ 90 (109)
T 3tco_A 80 LIF-VNGQLVDS 90 (109)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-cCCcEEEe
Confidence 999 99998865
No 43
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=99.08 E-value=2.9e-10 Score=100.80 Aligned_cols=80 Identities=19% Similarity=0.352 Sum_probs=65.5
Q ss_pred HHHHHH-HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAFAE-ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal~~-Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
++.+.. ..+++||++|.|+++||++|+.|... + .++++.++.++..++||.++.+++.+.| |+.|+|+
T Consensus 8 ~~~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt 76 (107)
T 1dby_A 8 DDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPV-V--DEIAGEYKDKLKCVKLNTDESPNVASEY--------GIRSIPT 76 (107)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTCEEEEEETTTCHHHHHHH--------TCCSSCE
T ss_pred HHHHHHHHhcCCCcEEEEEECCCCHhHHHHHHH-H--HHHHHHhCCceEEEEEECCCCHHHHHHC--------CCCcCCE
Confidence 344544 46789999999999999999999864 3 5677777767999999999988887766 8899999
Q ss_pred EEEECCCCceecc
Q 003940 207 SVFLSPDLKPLMG 219 (784)
Q Consensus 207 ~vfl~pdg~pi~~ 219 (784)
++++ ++|+++..
T Consensus 77 ~~~~-~~G~~~~~ 88 (107)
T 1dby_A 77 IMVF-KGGKKCET 88 (107)
T ss_dssp EEEE-SSSSEEEE
T ss_pred EEEE-eCCEEEEE
Confidence 8888 79998764
No 44
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=99.08 E-value=1.6e-10 Score=106.87 Aligned_cols=86 Identities=22% Similarity=0.222 Sum_probs=69.6
Q ss_pred cccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003940 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (784)
Q Consensus 121 v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g 200 (784)
|.....++++++.|+.++|+++|.|+++||++|+.|... | .++++.+. ++..++||.++.+++.+.| +
T Consensus 21 l~~~~~~~~~l~~~~~~~k~vvv~f~a~wC~~C~~~~~~-l--~~l~~~~~-~v~~~~vd~d~~~~l~~~~--------~ 88 (124)
T 1xfl_A 21 CHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPF-F--ADLAKKLP-NVLFLKVDTDELKSVASDW--------A 88 (124)
T ss_dssp ESSHHHHHHHHHHHHHTTCEEEEEEECTTCHHHHHHHHH-H--HHHHHHCS-SEEEEEEETTTSHHHHHHT--------T
T ss_pred eCCHHHHHHHHHHhhhcCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHCC-CcEEEEEECccCHHHHHHc--------C
Confidence 334445688899998899999999999999999999863 3 35555553 7999999999888877665 8
Q ss_pred CCCCCcEEEECCCCceecc
Q 003940 201 GGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 201 ~~G~P~~vfl~pdg~pi~~ 219 (784)
+.|+|+++|+ ++|+++..
T Consensus 89 v~~~Pt~~~~-~~G~~~~~ 106 (124)
T 1xfl_A 89 IQAMPTFMFL-KEGKILDK 106 (124)
T ss_dssp CCSSSEEEEE-ETTEEEEE
T ss_pred CCccCEEEEE-ECCEEEEE
Confidence 9999998888 89998764
No 45
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=99.07 E-value=2.1e-10 Score=104.61 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=62.3
Q ss_pred HHHHHHHhh--cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003940 128 EEAFAEARK--RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 128 ~eal~~Ak~--e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P 205 (784)
.+.++++.+ ++|+|+|.|+++||+.|+.|... + .++++.+. ++..++||.++.+++.+.| ++.++|
T Consensus 19 ~~~f~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~-l--~~l~~~~~-~v~~~~vd~d~~~~l~~~~--------~v~~~P 86 (116)
T 3qfa_C 19 KTAFQEALDAAGDKLVVVDFSATWCGPSKMIKPF-F--HSLSEKYS-NVIFLEVDVDDCQDVASEC--------EVKSMP 86 (116)
T ss_dssp HHHHHHHHHHHTTSCEEEEEECTTCHHHHHHHHH-H--HHHHTTCT-TSEEEEEETTTTHHHHHHT--------TCCSSS
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHCC-CCEEEEEECCCCHHHHHHc--------CCcccc
Confidence 455555544 79999999999999999999863 2 23444443 4899999999998887766 899999
Q ss_pred cEEEECCCCceecc
Q 003940 206 LSVFLSPDLKPLMG 219 (784)
Q Consensus 206 ~~vfl~pdg~pi~~ 219 (784)
+++|+ .+|+++..
T Consensus 87 t~~~~-~~G~~~~~ 99 (116)
T 3qfa_C 87 TFQFF-KKGQKVGE 99 (116)
T ss_dssp EEEEE-SSSSEEEE
T ss_pred EEEEE-eCCeEEEE
Confidence 99999 78988764
No 46
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=99.07 E-value=1.5e-10 Score=104.50 Aligned_cols=77 Identities=16% Similarity=0.213 Sum_probs=65.4
Q ss_pred HHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003940 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (784)
Q Consensus 130 al~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vf 209 (784)
.++.+. ++|+++|.|+++||++|+.|... + .++++.++.++..++||.++.+++.+.| ++.++|+++|
T Consensus 10 ~~~~~~-~~~~~lv~f~a~wC~~C~~~~~~-l--~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~ 77 (112)
T 2voc_A 10 SFSAET-SEGVVLADFWAPWCGPSKMIAPV-L--EELDQEMGDKLKIVKIDVDENQETAGKY--------GVMSIPTLLV 77 (112)
T ss_dssp THHHHH-SSSEEEEEEECTTBGGGGGHHHH-H--HHHHHHHTTTCEEEEEETTTCCSHHHHT--------TCCSBSEEEE
T ss_pred HHHHHh-CCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHhCCCcEEEEEECCCCHHHHHHc--------CCCcccEEEE
Confidence 344444 89999999999999999999874 3 5788888778999999999999887766 8899999999
Q ss_pred ECCCCceecc
Q 003940 210 LSPDLKPLMG 219 (784)
Q Consensus 210 l~pdg~pi~~ 219 (784)
+ ++|+++..
T Consensus 78 ~-~~G~~~~~ 86 (112)
T 2voc_A 78 L-KDGEVVET 86 (112)
T ss_dssp E-ETTEEEEE
T ss_pred E-eCCEEEEE
Confidence 9 99998764
No 47
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=99.06 E-value=2.1e-10 Score=103.31 Aligned_cols=86 Identities=21% Similarity=0.234 Sum_probs=69.2
Q ss_pred cccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003940 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (784)
Q Consensus 121 v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g 200 (784)
|.+...+++++..|+.++||++|.|+++||++|+.|... | .++++.+. ++..++||.++.+++.+.| +
T Consensus 11 i~~~~~~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~-~~~~~~v~~~~~~~~~~~~--------~ 78 (118)
T 2vm1_A 11 CHTKQEFDTHMANGKDTGKLVIIDFTASWCGPCRVIAPV-F--AEYAKKFP-GAIFLKVDVDELKDVAEAY--------N 78 (118)
T ss_dssp CCSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEETTTSHHHHHHT--------T
T ss_pred ecCHHHHHHHHHhcccCCCEEEEEEECCCCHhHHHHhHH-H--HHHHHHCC-CcEEEEEEcccCHHHHHHc--------C
Confidence 445556688999999999999999999999999999853 3 34554443 7899999999888877665 8
Q ss_pred CCCCCcEEEECCCCceecc
Q 003940 201 GGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 201 ~~G~P~~vfl~pdg~pi~~ 219 (784)
+.++|+++|+ ++|+++..
T Consensus 79 v~~~Pt~~~~-~~g~~~~~ 96 (118)
T 2vm1_A 79 VEAMPTFLFI-KDGEKVDS 96 (118)
T ss_dssp CCSBSEEEEE-ETTEEEEE
T ss_pred CCcCcEEEEE-eCCeEEEE
Confidence 8999999888 78998754
No 48
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=99.06 E-value=2.2e-10 Score=101.68 Aligned_cols=74 Identities=16% Similarity=0.251 Sum_probs=63.5
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (784)
..+++||++|.|+++||++|+.|... + .++++.++.++..++||.++.+++.+.| ++.|+|+++|+ ++
T Consensus 16 ~~~~~~~~~v~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~ 83 (108)
T 2trx_A 16 VLKADGAILVDFWAEWCGPCKMIAPI-L--DEIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLF-KN 83 (108)
T ss_dssp TTTCSSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTEEEEEEETTTCTTHHHHT--------TCCSSSEEEEE-ET
T ss_pred HHhcCCeEEEEEECCCCHhHHHHHHH-H--HHHHHHhCCCcEEEEEECCCCHHHHHHc--------CCcccCEEEEE-eC
Confidence 35789999999999999999999864 3 4777777767999999999999887766 89999999999 89
Q ss_pred Cceecc
Q 003940 214 LKPLMG 219 (784)
Q Consensus 214 g~pi~~ 219 (784)
|+++..
T Consensus 84 G~~~~~ 89 (108)
T 2trx_A 84 GEVAAT 89 (108)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 998754
No 49
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=99.05 E-value=2.2e-10 Score=107.03 Aligned_cols=86 Identities=12% Similarity=0.106 Sum_probs=69.9
Q ss_pred cccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003940 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (784)
Q Consensus 121 v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g 200 (784)
|.+...+++++..++.++|+|+|.|+++||++|+.|... + .++++.+ .++..++||.++.+++.+.| +
T Consensus 29 i~~~~~~~~~~~~~~~~~k~vvv~f~a~wC~~C~~~~~~-l--~~l~~~~-~~v~~~~v~~~~~~~~~~~~--------~ 96 (139)
T 3d22_A 29 ITTKERWDQKLSEASRDGKIVLANFSARWCGPSRQIAPY-Y--IELSENY-PSLMFLVIDVDELSDFSASW--------E 96 (139)
T ss_dssp ECSHHHHHHHHHHHHHHTCCEEEEEECTTCHHHHHHHHH-H--HHHHHHC-TTSEEEEEETTTSHHHHHHT--------T
T ss_pred eCCHHHHHHHHHHHhhcCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHC-CCCEEEEEeCcccHHHHHHc--------C
Confidence 444445688899998999999999999999999999863 3 3455554 36999999999888877666 8
Q ss_pred CCCCCcEEEECCCCceecc
Q 003940 201 GGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 201 ~~G~P~~vfl~pdg~pi~~ 219 (784)
+.|+|+++|+ ++|+++..
T Consensus 97 v~~~Pt~~~~-~~G~~~~~ 114 (139)
T 3d22_A 97 IKATPTFFFL-RDGQQVDK 114 (139)
T ss_dssp CCEESEEEEE-ETTEEEEE
T ss_pred CCcccEEEEE-cCCeEEEE
Confidence 9999999988 89998764
No 50
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=99.04 E-value=2.6e-10 Score=102.77 Aligned_cols=91 Identities=16% Similarity=0.151 Sum_probs=69.3
Q ss_pred ccCCCcccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHH
Q 003940 116 HAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYV 195 (784)
Q Consensus 116 ha~~~v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~ 195 (784)
+..+|..+..-..+-++++.+++|+++|.|+++||++|+.|... + .++++.+. ++..++||.++.+++.+.|
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~~~k~vlv~f~a~~C~~C~~~~~~-l--~~l~~~~~-~v~~~~vd~~~~~~~~~~~---- 75 (112)
T 1syr_A 4 HHHHHMVKIVTSQAEFDSIISQNELVIVDFFAEWCGPCKRIAPF-Y--EECSKTYT-KMVFIKVDVDEVSEVTEKE---- 75 (112)
T ss_dssp -----CCEEECSHHHHHHHHHHCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEETTTTHHHHHHT----
T ss_pred cccceeEEEECCHHHHHHHHccCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHcC-CCEEEEEECCCCHHHHHHc----
Confidence 44555566666678888888899999999999999999999864 3 35555553 6999999999888776665
Q ss_pred HHhcCCCCCCcEEEECCCCceecc
Q 003940 196 QALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 196 q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
++.++|+++|+ .+|+++..
T Consensus 76 ----~v~~~Pt~~~~-~~G~~~~~ 94 (112)
T 1syr_A 76 ----NITSMPTFKVY-KNGSSVDT 94 (112)
T ss_dssp ----TCCSSSEEEEE-ETTEEEEE
T ss_pred ----CCCcccEEEEE-ECCcEEEE
Confidence 88999998877 58988754
No 51
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.04 E-value=5.8e-10 Score=102.70 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=62.6
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (784)
..+++||++|.|+++||+.|+.|.... .++++.+..++..++||.++.+++.+.| ++.++|+++|++++
T Consensus 31 ~~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~~~~ 99 (130)
T 2dml_A 31 VIQSDGLWLVEFYAPWCGHCQRLTPEW---KKAATALKDVVKVGAVNADKHQSLGGQY--------GVQGFPTIKIFGAN 99 (130)
T ss_dssp TTTCSSCEEEEEECTTCSTTGGGHHHH---HHHHHHTTTTSEEEEEETTTCHHHHHHH--------TCCSSSEEEEESSC
T ss_pred HhcCCCeEEEEEECCCCHHHHhhCHHH---HHHHHHhcCceEEEEEeCCCCHHHHHHc--------CCCccCEEEEEeCC
Confidence 457799999999999999999998743 5788888777999999999988887766 88999999999998
Q ss_pred Ccee
Q 003940 214 LKPL 217 (784)
Q Consensus 214 g~pi 217 (784)
|+.+
T Consensus 100 ~~~~ 103 (130)
T 2dml_A 100 KNKP 103 (130)
T ss_dssp TTSC
T ss_pred CCeE
Confidence 8733
No 52
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=99.04 E-value=2.6e-10 Score=111.01 Aligned_cols=78 Identities=21% Similarity=0.166 Sum_probs=63.7
Q ss_pred HHHHHHHh--hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003940 128 EEAFAEAR--KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 128 ~eal~~Ak--~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P 205 (784)
.+.|+++- +++|||+|+|+|+||+.|+.|+. +|+ ++++.+....+.+|||+|+.|++.+.| ++.+.|
T Consensus 29 ~~~f~~~v~~~~~k~VVVdF~A~WCgPCk~m~P-vle--elA~e~~~~v~f~kVDVDe~~e~a~~y--------~V~siP 97 (160)
T 2av4_A 29 GWAVDQAIVNEDERLVCIRFGHDYDPDCMKMDE-LLY--KVADDIKNFCVIYLVDITEVPDFNTMY--------ELYDPV 97 (160)
T ss_dssp HHHHHHHHHHCSSSEEEEEEECTTSHHHHHHHH-HHH--HHHHHHTTTEEEEEEETTTCCTTTTTT--------TCCSSE
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHH-HHH--HHHHHccCCcEEEEEECCCCHHHHHHc--------CCCCCC
Confidence 34444442 57899999999999999999985 554 677777656889999999999999877 899999
Q ss_pred cEEEECCCCcee
Q 003940 206 LSVFLSPDLKPL 217 (784)
Q Consensus 206 ~~vfl~pdg~pi 217 (784)
|++|+ .+|+.+
T Consensus 98 T~~fF-k~G~~v 108 (160)
T 2av4_A 98 SVMFF-YRNKHM 108 (160)
T ss_dssp EEEEE-ETTEEE
T ss_pred EEEEE-ECCEEE
Confidence 99988 467776
No 53
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=99.03 E-value=4.5e-10 Score=102.26 Aligned_cols=80 Identities=20% Similarity=0.225 Sum_probs=66.3
Q ss_pred hHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 127 ~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
+++.+..|++++||++|.|+++||++|+.|.. .|+ ++++.+. ++..++||.++.+++.+.| ++.|+|+
T Consensus 23 ~~~~~~~~~~~~~~~vv~f~~~~C~~C~~~~~-~l~--~~~~~~~-~~~~~~vd~~~~~~~~~~~--------~v~~~Pt 90 (122)
T 2vlu_A 23 WTMQIEEANTAKKLVVIDFTASWCGPCRIMAP-VFA--DLAKKFP-NAVFLKVDVDELKPIAEQF--------SVEAMPT 90 (122)
T ss_dssp HHHHHHHHHHTTCCEEEEEECTTCHHHHHHHH-HHH--HHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHhhccCCEEEEEEECCCCHHHHHHHH-HHH--HHHHHCC-CcEEEEEECCCCHHHHHHc--------CCCcccE
Confidence 47788888889999999999999999999986 443 5666554 3899999999988877666 8999999
Q ss_pred EEEECCCCceecc
Q 003940 207 SVFLSPDLKPLMG 219 (784)
Q Consensus 207 ~vfl~pdg~pi~~ 219 (784)
++|+ ++|+++..
T Consensus 91 ~~~~-~~G~~~~~ 102 (122)
T 2vlu_A 91 FLFM-KEGDVKDR 102 (122)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-eCCEEEEE
Confidence 8877 89998754
No 54
>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}
Probab=99.03 E-value=2e-10 Score=105.39 Aligned_cols=86 Identities=20% Similarity=0.191 Sum_probs=69.6
Q ss_pred cccccchHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003940 121 VDWFAWGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG 200 (784)
Q Consensus 121 v~W~~~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g 200 (784)
|.....+++.+..+++++||++|.|+++||++|+.|... | .++++.+. ++..++||.++.+++.+.| +
T Consensus 19 i~~~~~~~~~l~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~-~v~~~~v~~~~~~~~~~~~--------~ 86 (130)
T 1wmj_A 19 CHNKDEFDAQMTKAKEAGKVVIIDFTASWCGPCRFIAPV-F--AEYAKKFP-GAVFLKVDVDELKEVAEKY--------N 86 (130)
T ss_dssp CSSSHHHHHHHHHHHTTTCBCBEECCSSSCSCSSSSHHH-H--HHHHHHCT-TBCCEECCTTTSGGGHHHH--------T
T ss_pred cCCHHHHHHHHHHHhhcCCEEEEEEECCCChhHHHHHHH-H--HHHHHHCC-CCEEEEEeccchHHHHHHc--------C
Confidence 444455688999999999999999999999999999863 3 24554443 6888999999988888776 8
Q ss_pred CCCCCcEEEECCCCceecc
Q 003940 201 GGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 201 ~~G~P~~vfl~pdg~pi~~ 219 (784)
+.++|+++|+ ++|+++..
T Consensus 87 v~~~Pt~~~~-~~g~~~~~ 104 (130)
T 1wmj_A 87 VEAMPTFLFI-KDGAEADK 104 (130)
T ss_dssp CCSSCCCCBC-TTTTCCBC
T ss_pred CCccceEEEE-eCCeEEEE
Confidence 8999998887 89998754
No 55
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=99.03 E-value=6.7e-11 Score=109.57 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=56.6
Q ss_pred HHhhcCCcEEEEEcccCChhhhhhhhcccC---C--------HHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCC
Q 003940 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFE---D--------EGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG 201 (784)
Q Consensus 133 ~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~---d--------~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~ 201 (784)
...+++|||+|.|+++||++|..|+.++|. . .++++.+..++..++||.++.+++.+.| |+
T Consensus 16 ~~~~~~k~vlv~F~a~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~l~~~~--------~v 87 (123)
T 1oaz_A 16 DVLKADGAILVDFWAEWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKY--------GI 87 (123)
T ss_dssp HTTSCSSEEEEEEECSSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTTTGGGG--------TC
T ss_pred HHHhCCCeEEEEEECCCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHc--------CC
Confidence 336789999999999999955555444443 1 2455556557999999999999887766 89
Q ss_pred CCCCcEEEECCCCceecc
Q 003940 202 GGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 202 ~G~P~~vfl~pdg~pi~~ 219 (784)
.|+|+++|+ ++|+++..
T Consensus 88 ~~~Pt~~~~-~~G~~~~~ 104 (123)
T 1oaz_A 88 RGIPTLLLF-KNGEVAAT 104 (123)
T ss_dssp CBSSEEEEE-ESSSEEEE
T ss_pred CccCEEEEE-ECCEEEEE
Confidence 999999999 99998754
No 56
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=99.03 E-value=4.9e-10 Score=105.53 Aligned_cols=80 Identities=20% Similarity=0.303 Sum_probs=68.0
Q ss_pred HHHHH-HHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAFA-EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal~-~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
++.+. ...+++||++|.|+++||++|+.|.... .++++.+..++..++||.++.+++.+.| ++.|+|+
T Consensus 13 ~~~f~~~~~~~~~~vlv~F~a~wC~~C~~~~~~l---~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt 81 (140)
T 3hz4_A 13 DMTWSQQVEDSKKPVVVMFYSPACPYCKAMEPYF---EEYAKEYGSSAVFGRINIATNPWTAEKY--------GVQGTPT 81 (140)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTSEEEEEETTTCHHHHHHH--------TCCEESE
T ss_pred hHhHHHHHHhCCCcEEEEEECCCChhHHHHHHHH---HHHHHHhCCceEEEEEECCcCHhHHHHC--------CCCcCCE
Confidence 45555 6778899999999999999999998744 6788888878999999999998887776 8999999
Q ss_pred EEEECCCCceecc
Q 003940 207 SVFLSPDLKPLMG 219 (784)
Q Consensus 207 ~vfl~pdg~pi~~ 219 (784)
++|+ .+|+++..
T Consensus 82 ~~~~-~~G~~~~~ 93 (140)
T 3hz4_A 82 FKFF-CHGRPVWE 93 (140)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-eCCcEEEE
Confidence 9988 78988754
No 57
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=99.02 E-value=3.7e-10 Score=99.72 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=63.5
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg 214 (784)
.+++||++|.|+++||++|+.|... + .++++.+..++..++||.++.+++.+.| ++.++|+++++ ++|
T Consensus 17 ~~~~~~~lv~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 84 (107)
T 2i4a_A 17 LKASGLVLVDFWAEWCGPCKMIGPA-L--GEIGKEFAGKVTVAKVNIDDNPETPNAY--------QVRSIPTLMLV-RDG 84 (107)
T ss_dssp TTCSSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTSEEEEEEETTTCCHHHHHT--------TCCSSSEEEEE-ETT
T ss_pred HhCCCEEEEEEECCCChhHHHHhHH-H--HHHHHHhCCcEEEEEEECCCCHHHHHhc--------CCCccCEEEEE-eCC
Confidence 5789999999999999999999874 4 5788888778999999999988877666 88999999999 899
Q ss_pred ceecc
Q 003940 215 KPLMG 219 (784)
Q Consensus 215 ~pi~~ 219 (784)
+++..
T Consensus 85 ~~~~~ 89 (107)
T 2i4a_A 85 KVIDK 89 (107)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98864
No 58
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=99.02 E-value=3.3e-10 Score=100.04 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=65.7
Q ss_pred HHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003940 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~v 208 (784)
+.++.+.+++|+++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|+++
T Consensus 9 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~ 77 (109)
T 2yzu_A 9 QNFDETLGQHPLVLVDFWAEWCAPCRMIAPI-L--EEIAKEYEGKLLVAKLDVDENPKTAMRY--------RVMSIPTVI 77 (109)
T ss_dssp TTHHHHHHHCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTBTTBEEEEEETTTCHHHHHHT--------TCCSSSEEE
T ss_pred hHHHHHhcCCCeEEEEEECCCCHHHHHhhHH-H--HHHHHHhhCceEEEEEECCCCHhHHHhC--------CCCcCCEEE
Confidence 3445556789999999999999999999864 3 5777777767999999999888877665 889999999
Q ss_pred EECCCCceecc
Q 003940 209 FLSPDLKPLMG 219 (784)
Q Consensus 209 fl~pdg~pi~~ 219 (784)
|+ ++|+++..
T Consensus 78 ~~-~~g~~~~~ 87 (109)
T 2yzu_A 78 LF-KDGQPVEV 87 (109)
T ss_dssp EE-ETTEEEEE
T ss_pred EE-eCCcEeee
Confidence 99 89998764
No 59
>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}
Probab=99.01 E-value=2.1e-10 Score=106.12 Aligned_cols=78 Identities=15% Similarity=0.245 Sum_probs=66.4
Q ss_pred HHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003940 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (784)
Q Consensus 130 al~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vf 209 (784)
.+..+..++|+|+|.|+++||++|+.|.... .++++.++.++..++||.++.+++.+.| ++.|+|+++|
T Consensus 34 ~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~~~~~~~~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt~~~ 102 (128)
T 3ul3_B 34 IINGVNMKNTVIVLYFFAKWCQACTMQSTEM---DKLQKYYGKRIYLLKVDLDKNESLARKF--------SVKSLPTIIL 102 (128)
T ss_dssp SSSBTTSCCSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGEEEEEEEGGGCHHHHHHT--------TCCSSSEEEE
T ss_pred HHHHHHccCCEEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCeEEEEEECCCCHHHHHHc--------CCCCcCEEEE
Confidence 3455667899999999999999999998743 5788888778999999999988877666 8999999999
Q ss_pred ECCCCceecc
Q 003940 210 LSPDLKPLMG 219 (784)
Q Consensus 210 l~pdg~pi~~ 219 (784)
+ .+|+++..
T Consensus 103 ~-~~G~~~~~ 111 (128)
T 3ul3_B 103 L-KNKTMLAR 111 (128)
T ss_dssp E-ETTEEEEE
T ss_pred E-ECCEEEEE
Confidence 9 78998764
No 60
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=99.00 E-value=5.3e-10 Score=98.37 Aligned_cols=89 Identities=16% Similarity=0.270 Sum_probs=68.5
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (784)
..+.+||++|.|+++||++|+.|... + .++++.+..++..++||.++.+++.+.| ++.++|+++++ ++
T Consensus 14 ~~~~~~~~~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~ 81 (105)
T 1fb6_A 14 VLESEVPVMVDFWAPWCGPCKLIAPV-I--DELAKEYSGKIAVYKLNTDEAPGIATQY--------NIRSIPTVLFF-KN 81 (105)
T ss_dssp TTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ET
T ss_pred HhcCCCcEEEEEECCCChHHHHHHHH-H--HHHHHHhcCceEEEEEcCcchHHHHHhC--------CCCcccEEEEE-eC
Confidence 34579999999999999999999864 3 5677777777999999999888877665 88999998887 79
Q ss_pred Cceeccc-cccCCCCCCCcchHHHHHHH
Q 003940 214 LKPLMGG-TYFPPEDKYGRPGFKTILRK 240 (784)
Q Consensus 214 g~pi~~~-tY~p~~~~~~~~~f~~~L~~ 240 (784)
|+++... ++.+++ .+.+.|++
T Consensus 82 g~~~~~~~G~~~~~------~l~~~l~~ 103 (105)
T 1fb6_A 82 GERKESIIGAVPKS------TLTDSIEK 103 (105)
T ss_dssp TEEEEEEEECCCHH------HHHHHHHH
T ss_pred CeEEEEEecCCCHH------HHHHHHHh
Confidence 9987643 334322 45555544
No 61
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=99.00 E-value=4.1e-10 Score=100.81 Aligned_cols=76 Identities=18% Similarity=0.254 Sum_probs=62.6
Q ss_pred HHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003940 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (784)
Q Consensus 132 ~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~ 211 (784)
+...+++||++|.|+++||++|+.|... + .++++.+..++..++||.++.+++.+.| ++.|+|+++|+
T Consensus 17 ~~~~~~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~- 84 (112)
T 1t00_A 17 QDVLKNDKPVLVDFWAAWCGPCRQIAPS-L--EAIAAEYGDKIEIVKLNIDENPGTAAKY--------GVMSIPTLNVY- 84 (112)
T ss_dssp HHTTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-
T ss_pred HHHhhCCCeEEEEEECCCCHhHHhcCHH-H--HHHHHHhcCCeEEEEEEcCCCHHHHHhC--------CCCcccEEEEE-
Confidence 3445679999999999999999999863 3 4677777667999999999888877665 88999998887
Q ss_pred CCCceecc
Q 003940 212 PDLKPLMG 219 (784)
Q Consensus 212 pdg~pi~~ 219 (784)
++|+++..
T Consensus 85 ~~G~~~~~ 92 (112)
T 1t00_A 85 QGGEVAKT 92 (112)
T ss_dssp ETTEEEEE
T ss_pred eCCEEEEE
Confidence 79998754
No 62
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=99.00 E-value=7.7e-10 Score=99.16 Aligned_cols=72 Identities=17% Similarity=0.229 Sum_probs=56.8
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHH-hcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~l-n~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg 214 (784)
..+||++|.|+++||+.|+.|... | .++++.+ +.++..++||.++.+++.+.| ++.|+|+++|+ .+|
T Consensus 19 ~~~~~~~v~f~a~wC~~C~~~~~~-~--~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 86 (112)
T 3d6i_A 19 AGDKLIVLYFHTSWAEPCKALKQV-F--EAISNEPSNSNVSFLSIDADENSEISELF--------EISAVPYFIII-HKG 86 (112)
T ss_dssp TTTCCEEEEEECCC--CHHHHHHH-H--HHHHHCGGGTTSEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETT
T ss_pred cCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHhcCCCCEEEEEEecccCHHHHHHc--------CCCcccEEEEE-ECC
Confidence 559999999999999999999863 3 3455543 346999999999988877665 88999999988 699
Q ss_pred ceecc
Q 003940 215 KPLMG 219 (784)
Q Consensus 215 ~pi~~ 219 (784)
+++..
T Consensus 87 ~~~~~ 91 (112)
T 3d6i_A 87 TILKE 91 (112)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98764
No 63
>3k11_A Putative glycosyl hydrolase; structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE MES; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.00 E-value=3.9e-09 Score=118.76 Aligned_cols=218 Identities=15% Similarity=0.121 Sum_probs=155.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc------CCCCceeecccCCCccccccccccCCceEE
Q 003940 374 HFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI------GPGGEIFSAEDADSAETEGATRKKEGAFYV 447 (784)
Q Consensus 374 HFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~------~~~Ggfysa~DADS~~~~~~~~~~EGayY~ 447 (784)
.|-+-=|.++.++.+++++|++|||+.|++.|++.++|+.+.|. +.+|.+..
T Consensus 76 ~~~~~~y~~Gv~l~gl~~ay~~Tgd~kY~~ya~~~~dfi~~~~p~~~~~~~~~G~l~~---------------------- 133 (445)
T 3k11_A 76 AFRLASYEWGVTYSALIAAAETTGDKRYTDYVQNRFRFLAEVAPHFKRVYEEKGKTDS---------------------- 133 (445)
T ss_dssp SSCTTSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCH----------------------
T ss_pred CcccCccCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhccchhhhhhhccCCeec----------------------
Confidence 34444499999999999999999999999999999999987542 11221110
Q ss_pred echHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 003940 448 WTSKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFD 527 (784)
Q Consensus 448 Wt~~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~ 527 (784)
..|..
T Consensus 134 ------------------------------------------------------------------------~~r~~--- 138 (445)
T 3k11_A 134 ------------------------------------------------------------------------QLLQI--- 138 (445)
T ss_dssp ------------------------------------------------------------------------HHHHH---
T ss_pred ------------------------------------------------------------------------ccccc---
Confidence 00010
Q ss_pred hhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 003940 528 VRSKRPRPHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 607 (784)
Q Consensus 528 ~R~~R~~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~ 607 (784)
. ...++||. |.++.+|.++++++++ ++|++.|.+++++|.+.+.+.++|+|+|.
T Consensus 139 ---~-~~~~LDD~------g~~~~~Li~lY~~T~d----------------~~yl~~a~~~ad~L~~~~pRt~~Ggf~h~ 192 (445)
T 3k11_A 139 ---L-TPHALDDA------GAVCTAMIKLRLKDES----------------LPVDGLIQNYFDFIINKEYRLADGTFARN 192 (445)
T ss_dssp ---H-SCCSGGGT------HHHHHHHHHHHHHCTT----------------CCCHHHHHHHHHHHHHTSCBCTTCCBCBC
T ss_pred ---c-CCCcchhH------HHHHHHHHHHHHhcCC----------------HHHHHHHHHHHHHHHHcCCCCCCCceeec
Confidence 0 13378997 9999999999999988 68999999999999999988778999874
Q ss_pred ecCCCCCCCCCcchHHHHH-HHHHHHHHHcCCHH--HHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCC
Q 003940 608 FRNGPSKAPGFLDDYAFLI-SGLLDLYEFGSGTK--WLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDG 684 (784)
Q Consensus 608 ~~dg~~~~~~~leDyA~li-~aLL~LYeaTgd~~--yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~ 684 (784)
. +.....+.|-.|+. --|..+++.|||++ |++.|.+-+....++++|+++|-||..-..+. ...+.
T Consensus 193 ~----~~~~q~WiD~lyM~~pfla~~~~~tgd~~~~y~d~A~~q~~~~~~~l~D~~tGL~~Hg~~~~~-------~~~~~ 261 (445)
T 3k11_A 193 R----PQRNTLWLDDMFMGIPAVAQMSRYDKEAKNKYLAEAVKQFLQFADRMFIPEKGLYRHGWVESS-------TDHPA 261 (445)
T ss_dssp S----SSTTEEETHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTC-------SSCCC
T ss_pred C----CCCCceEecchhhHHHHHHHHHHHHCCcchHHHHHHHHHHHHHHHhcccCCCCCEeeeecCCC-------CCCCc
Confidence 1 11234556776544 55666889999999 99999999999999999999998775322111 01111
Q ss_pred CC-CChhHHHHHHHHHHHHHhCCC--CchHHHHHHHHHHHHHHH
Q 003940 685 AE-PSGNSVSVINLVRLASIVAGS--KSDYYRQNAEHSLAVFET 725 (784)
Q Consensus 685 a~-PS~Nsv~a~~L~rL~~lt~~~--~~~~y~e~A~~~l~~~~~ 725 (784)
.. --||+=.+.+|.++.+....+ ..+.+.+.++++++.+..
T Consensus 262 ~~WaRGnGW~~~gl~~~l~~lp~~~~~r~~l~~~~~~~a~~l~~ 305 (445)
T 3k11_A 262 FCWARANGWALLTACELLDVLPEDYPQRPKVMDYFRAHVRGVTA 305 (445)
T ss_dssp CCBHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHHT
T ss_pred ceecccchHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHH
Confidence 11 126777888899888886542 134566666666666544
No 64
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=98.99 E-value=1e-10 Score=104.27 Aligned_cols=77 Identities=16% Similarity=0.209 Sum_probs=54.3
Q ss_pred HHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003940 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (784)
Q Consensus 130 al~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vf 209 (784)
.++.+.+++|||+|.|+++||+.|+.|... + .++++.+ .++..++||.++.+++.+.| ++.++|+++|
T Consensus 10 ~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~-~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~ 77 (105)
T 4euy_A 10 ELATYIEEQQLVLLFIKTENCGVCDVMLRK-V--NYVLENY-NYVEKIEILLQDMQEIAGRY--------AVFTGPTVLL 77 (105)
T ss_dssp CCSSSTTCSSEEEEEEEESSCHHHHHHHHH-H--HHHHHTC-TTEEEEEEEECCC-----------------CCCCEEEE
T ss_pred HHHHHHhcCCCEEEEEeCCCCcchHHHHHH-H--HHHHHHc-CCceEEEEECCCCHHHHHhc--------CCCCCCEEEE
Confidence 344455789999999999999999999753 2 3455444 36899999999999887776 7889999999
Q ss_pred ECCCCceecc
Q 003940 210 LSPDLKPLMG 219 (784)
Q Consensus 210 l~pdg~pi~~ 219 (784)
+. +|+++..
T Consensus 78 ~~-~G~~~~~ 86 (105)
T 4euy_A 78 FY-NGKEILR 86 (105)
T ss_dssp EE-TTEEEEE
T ss_pred Ee-CCeEEEE
Confidence 95 8998765
No 65
>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}
Probab=98.99 E-value=5.9e-10 Score=101.48 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=65.1
Q ss_pred HHHH-HHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAF-AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal-~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
.+.+ +...+++||++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|+
T Consensus 10 ~~~f~~~~~~~~~~~lv~f~a~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt 78 (122)
T 3aps_A 10 PQTFNEKVLQGKTHWVVDFYAPWCGPCQNFAPE-F--ELLARMIKGKVRAGKVDCQAYPQTCQKA--------GIKAYPS 78 (122)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTTCEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHhcCCeEEEEEeCcCCHHHHHHc--------CCCccce
Confidence 3445 5567889999999999999999999873 4 4678888778999999999988877665 8899999
Q ss_pred EEEECCCCce
Q 003940 207 SVFLSPDLKP 216 (784)
Q Consensus 207 ~vfl~pdg~p 216 (784)
++|++++|+.
T Consensus 79 ~~~~~~~~~~ 88 (122)
T 3aps_A 79 VKLYQYERAK 88 (122)
T ss_dssp EEEEEEEGGG
T ss_pred EEEEeCCCcc
Confidence 9999887763
No 66
>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}
Probab=98.99 E-value=6e-10 Score=102.02 Aligned_cols=80 Identities=19% Similarity=0.266 Sum_probs=65.3
Q ss_pred HHHHH-HHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAFA-EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal~-~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
.+.+. ..++++|||+|.|+++||++|+.|... | .++++.+ .++..++||.++.+++.+.| ++.++|+
T Consensus 12 ~~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~~~-l--~~l~~~~-~~v~~~~vd~~~~~~~~~~~--------~i~~~Pt 79 (118)
T 2f51_A 12 HEALLNRIKEAPGLVLVDFFATWCGPCQRLGQI-L--PSIAEAN-KDVTFIKVDVDKNGNAADAY--------GVSSIPA 79 (118)
T ss_dssp HHHHHHHHHHCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHC-TTSEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHHhCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHC-CCeEEEEEECCCCHHHHHhc--------CCCCCCE
Confidence 44555 566789999999999999999999864 3 4677766 68999999999988877665 8899999
Q ss_pred EEEECC---CCceecc
Q 003940 207 SVFLSP---DLKPLMG 219 (784)
Q Consensus 207 ~vfl~p---dg~pi~~ 219 (784)
++|++. +|+++..
T Consensus 80 ~~~~~~~~~~G~~~~~ 95 (118)
T 2f51_A 80 LFFVKKEGNEIKTLDQ 95 (118)
T ss_dssp EEEEEEETTEEEEEEE
T ss_pred EEEEeCCCCcceEEEe
Confidence 999976 4787765
No 67
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=98.98 E-value=4e-10 Score=99.32 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=64.7
Q ss_pred HHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003940 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~v 208 (784)
+.++.+. ++||++|.|+++||++|+.|.... .++++.+...+..++||.++.+++.+.| ++.++|+++
T Consensus 11 ~~~~~~~-~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~ 78 (106)
T 3die_A 11 ADFDSKV-ESGVQLVDFWATACGPCKMIAPVL---EELAADYEGKADILKLDVDENPSTAAKY--------EVMSIPTLI 78 (106)
T ss_dssp TTHHHHS-CSSEEEEEEECSBCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSBSEEE
T ss_pred HHHHHHh-cCCcEEEEEECCCCHHHHHHhHHH---HHHHHHhcCCcEEEEEECCcCHHHHHhC--------CCcccCEEE
Confidence 3444444 899999999999999999998643 6777777767999999999998887666 899999999
Q ss_pred EECCCCceecc
Q 003940 209 FLSPDLKPLMG 219 (784)
Q Consensus 209 fl~pdg~pi~~ 219 (784)
|+. +|+++..
T Consensus 79 ~~~-~G~~~~~ 88 (106)
T 3die_A 79 VFK-DGQPVDK 88 (106)
T ss_dssp EEE-TTEEEEE
T ss_pred EEe-CCeEEEE
Confidence 995 8988764
No 68
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=98.98 E-value=1e-09 Score=97.76 Aligned_cols=71 Identities=11% Similarity=0.092 Sum_probs=58.9
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~ 215 (784)
+++||++|.|+++||++|+.|... | .++++.+ .++..++||.++.+++.+.| ++.++|+++|+ .+|+
T Consensus 19 ~~~~~v~v~f~a~wC~~C~~~~~~-~--~~~~~~~-~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~ 85 (107)
T 1gh2_A 19 AGSRLAVVKFTMRGCGPCLRIAPA-F--SSMSNKY-PQAVFLEVDVHQCQGTAATN--------NISATPTFQFF-RNKV 85 (107)
T ss_dssp TTTSCEEEEEECSSCHHHHHHHHH-H--HHHHHHC-TTSEEEEEETTTSHHHHHHT--------TCCSSSEEEEE-ETTE
T ss_pred CCCCEEEEEEECCCChhhHHHHHH-H--HHHHHHC-CCcEEEEEECccCHHHHHhc--------CCCcccEEEEE-ECCe
Confidence 579999999999999999999863 3 3566655 46999999999988877665 88999999988 7898
Q ss_pred eecc
Q 003940 216 PLMG 219 (784)
Q Consensus 216 pi~~ 219 (784)
++..
T Consensus 86 ~~~~ 89 (107)
T 1gh2_A 86 RIDQ 89 (107)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
No 69
>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=1.3e-09 Score=100.33 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=61.9
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh----cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN----DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln----~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vf 209 (784)
..+.+|+++|.|+++||++|+.|.... .++++.++ .++..++||.++.+++.+.| ++.++|+++|
T Consensus 21 ~~~~~~~~lv~f~a~wC~~C~~~~~~~---~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~ 89 (133)
T 1x5d_A 21 VLDSEDVWMVEFYAPWCGHCKNLEPEW---AAAASEVKEQTKGKVKLAAVDATVNQVLASRY--------GIRGFPTIKI 89 (133)
T ss_dssp TTTSSSEEEEEEECTTCHHHHTHHHHH---HHHHHHHHHHTTTSEEEEEEETTTCCHHHHHH--------TCCSSSEEEE
T ss_pred HhcCCCeEEEEEECCCCHHHHhhcHHH---HHHHHHHHhhcCCcEEEEEEECCCCHHHHHhC--------CCCeeCeEEE
Confidence 356799999999999999999998743 46777776 67999999999998887776 8899999999
Q ss_pred ECCCCceec
Q 003940 210 LSPDLKPLM 218 (784)
Q Consensus 210 l~pdg~pi~ 218 (784)
+++ |+.+.
T Consensus 90 ~~~-g~~~~ 97 (133)
T 1x5d_A 90 FQK-GESPV 97 (133)
T ss_dssp EET-TEEEE
T ss_pred EeC-CCceE
Confidence 988 77654
No 70
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.98 E-value=9.5e-10 Score=102.55 Aligned_cols=77 Identities=18% Similarity=0.299 Sum_probs=62.6
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcc---cEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~---FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~ 204 (784)
.+.++.+.+++|+|+|.|+++||++|+.|... | .++++.+... ++.++||.++.+++.+.| ++.++
T Consensus 24 ~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~ 92 (140)
T 2dj1_A 24 DGNFDNFVADKDTVLLEFYAPWCGHCKQFAPE-Y--EKIASTLKDNDPPIAVAKIDATSASMLASKF--------DVSGY 92 (140)
T ss_dssp TTTHHHHHTTCSEEEEEECCTTCHHHHTTHHH-H--HHHHHHHHSSSSCCEEEEECTTTCHHHHHHT--------TCCSS
T ss_pred hHhHHHHHhcCCeEEEEEECCCCHHHHHhhHH-H--HHHHHHHhccCCceEEEEEeCcccHHHHHHC--------CCCcc
Confidence 44566666789999999999999999999864 3 3566667654 999999999888776665 88999
Q ss_pred CcEEEECCCCce
Q 003940 205 PLSVFLSPDLKP 216 (784)
Q Consensus 205 P~~vfl~pdg~p 216 (784)
|+++|+ .+|++
T Consensus 93 Pt~~~~-~~G~~ 103 (140)
T 2dj1_A 93 PTIKIL-KKGQA 103 (140)
T ss_dssp SEEEEE-ETTEE
T ss_pred CeEEEE-ECCcE
Confidence 999999 78884
No 71
>3pmm_A Putative cytoplasmic protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 1.90A {Klebsiella pneumoniae subsp} PDB: 3qwt_A
Probab=98.97 E-value=5e-08 Score=107.98 Aligned_cols=289 Identities=15% Similarity=0.121 Sum_probs=184.5
Q ss_pred cHHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCC--CCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHH
Q 003940 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWH--VPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDY 411 (784)
Q Consensus 334 ~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~--vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~f 411 (784)
.+++.+.+.+..+++.. |.|.-+---+|. ...+. .+.+.+=-|.++.++..+..+|++|||+.|++.|++.++-
T Consensus 24 ~~~~~~~l~~~~~~l~~--~~~~~~~f~~~~--~~~~~~d~k~~~~W~Wt~G~~~~gl~~~ye~Tgd~~y~~~a~~~~~~ 99 (382)
T 3pmm_A 24 RSELQALIRNVTQNLVN--IKDESGQFLLRL--DDGRVIDTKGWAGWEWTHGVGLYGIYQYYQQTGDIEMRDIIDRWFAD 99 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--CCCTTCTTCEEC--TTSCEECSSSTTSCSHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh--ccCccccccccC--CccccccCCCCcCccccHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 35677777778888866 666522222332 21221 2445566688999999999999999999999999998875
Q ss_pred HHHhccCCCCceeecccCCCccccccccccCCceEEechHHHHHHhhhh--HHHHHHH-------hcccCCCCcCCCCCC
Q 003940 412 LRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH--AILFKEH-------YYLKPTGNCDLSRMS 482 (784)
Q Consensus 412 l~~~m~~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~--~~l~~~~-------f~l~~~Gn~e~~~~~ 482 (784)
+.++ +|... +.|. +++. .+.-+++++.|++ .+.+... +--+++|.+
T Consensus 100 ~~~~----~~~~~---n~D~-----------~~~~-~~l~~lY~~Tgd~~Yl~~a~~~ad~L~~~~~r~~~Ggf------ 154 (382)
T 3pmm_A 100 RFAE----GATTK---NVNT-----------MAPF-LTLAYRFEETGRMAYLPWLESWAEWAMHEMPRTEQGGM------ 154 (382)
T ss_dssp HHHH----CCCCC---CTTT-----------TTTH-HHHHHHHHHHCCGGGHHHHHHHHHHHHHTSCBCGGGCB------
T ss_pred HHcC----CCCcC---cccc-----------hHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCcCCCe------
Confidence 5442 23222 1221 1111 2445666666632 1111111 111222221
Q ss_pred CCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHHHHHHHHHHHhhh
Q 003940 483 DPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVISSFARASKILKS 562 (784)
Q Consensus 483 dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I~ALa~a~~~~~d 562 (784)
..+ . ...+ ....++.+-..|.+-.|+++++++|+
T Consensus 155 ------~~~-----~----------------------------------~~~~-~~~~~WiDgl~M~~p~La~~~~~tgd 188 (382)
T 3pmm_A 155 ------QHM-----T----------------------------------LAEE-NHQQMWDDTLMMTVLPLAKIGKLLNR 188 (382)
T ss_dssp ------CCC-----C----------------------------------SSCC-CTTEEETTHHHHTHHHHHHHHHHTTC
T ss_pred ------eee-----c----------------------------------CCCC-CCCcEEecchhhhHHHHHHHHHHHCC
Confidence 000 0 0000 01122222234557799999999998
Q ss_pred hhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEec-CCCC--CCCCCcchHHHHHHHHHHHHHH----
Q 003940 563 EAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFR-NGPS--KAPGFLDDYAFLISGLLDLYEF---- 635 (784)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~-dg~~--~~~~~leDyA~li~aLL~LYea---- 635 (784)
++|++.|.+-+....++++|+++|.++|.+. .|.. ......-.+++++.|+.+.++.
T Consensus 189 ----------------~~y~d~A~~q~~~~~~~l~D~~tGl~~h~~~~~~~~~~~~~~WaRG~gW~~~gl~~~l~~l~~p 252 (382)
T 3pmm_A 189 ----------------PQYVEEATYQFLLHVQNLMDRETGLWFHGWNYEGRHNFARARWARGNSWLTMVIPDFLELVDLP 252 (382)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHBCTTTSCBCSEEETTTTBCTTCCCBHHHHHHHHHHHHHHHHHHCCC
T ss_pred ----------------HHHHHHHHHHHHHHHHHccCCCCCCeeeeccCCCCCCCCcceecccccHHHHHHHHHHHhhcCC
Confidence 8999999999999999999999999999863 3322 1223334789999999999998
Q ss_pred ---cCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHH--HhCCCCch
Q 003940 636 ---GSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLAS--IVAGSKSD 710 (784)
Q Consensus 636 ---Tgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~--lt~~~~~~ 710 (784)
++++.+++.++++.+.+.++- + ++|.|+... +++. .-..-|+.|+++-+|+++.+ +.+ +
T Consensus 253 ~~~~~~~~~~~~~~~~a~~~~~~q-~-~~G~W~~~~-d~~~---------~y~EsSatA~~ay~ll~~~~~g~l~----~ 316 (382)
T 3pmm_A 253 EGNAVRRYLITVLDAQIAALAECQ-D-DSGLWHTLL-DDPH---------SYLEASATAGFAYGILKAVRKRYVG----Q 316 (382)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHC-C-TTSCEESBT-TCTT---------SCEEHHHHHHHHHHHHHHHHTTSSC----G
T ss_pred cchhhHHHHHHHHHHHHHHHHHcC-C-CCCChhhcc-CCCC---------CCccccHHHHHHHHHHHHHHcCCCc----H
Confidence 567789999999999998875 5 456444322 2221 11234888999999999888 332 6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003940 711 YYRQNAEHSLAVFETRLKD 729 (784)
Q Consensus 711 ~y~e~A~~~l~~~~~~l~~ 729 (784)
.|+..|+++++.+.+.+..
T Consensus 317 ~Y~~~a~ka~~~l~~~i~~ 335 (382)
T 3pmm_A 317 HYAGVAEKAIRGIVQNISP 335 (382)
T ss_dssp GGHHHHHHHHHHHHHTBCT
T ss_pred HHHHHHHHHHHHHHhhCCC
Confidence 7999999999999876543
No 72
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=98.97 E-value=1e-09 Score=96.68 Aligned_cols=70 Identities=13% Similarity=0.160 Sum_probs=58.4
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~p 216 (784)
++||++|.|+++||+.|+.|.... .++++.+. ++..++||.++.+++.+.| ++.++|+++|+ .+|+.
T Consensus 19 ~~~~~~v~f~~~~C~~C~~~~~~~---~~~~~~~~-~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~g~~ 85 (105)
T 3m9j_A 19 GDKLVVVDFSATWCGPCKMIKPFF---HSLSEKYS-NVIFLEVDVDDCQDVASES--------EVKSMPTFQFF-KKGQK 85 (105)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHHH---HHHHHHST-TSEEEEEETTTCHHHHHHT--------TCCBSSEEEEE-ETTEE
T ss_pred CCCeEEEEEECCCChhhHHHHHHH---HHHHHHcc-CeEEEEEEhhhhHHHHHHc--------CCCcCcEEEEE-ECCeE
Confidence 699999999999999999998633 34665554 4899999999988877666 89999999999 78888
Q ss_pred ecc
Q 003940 217 LMG 219 (784)
Q Consensus 217 i~~ 219 (784)
+..
T Consensus 86 ~~~ 88 (105)
T 3m9j_A 86 VGE 88 (105)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 73
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=98.97 E-value=5.1e-10 Score=104.19 Aligned_cols=73 Identities=15% Similarity=0.204 Sum_probs=62.9
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg 214 (784)
.+.+|+++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|+++|+ ++|
T Consensus 37 ~~~~k~vlv~F~a~wC~~C~~~~p~-l--~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~~G 104 (128)
T 2o8v_B 37 LKADGAILVDFWAEWCGPAKMIAPI-L--DEIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPTLLLF-KNG 104 (128)
T ss_dssp TTCSSEEEEEEECSSCHHHHHTHHH-H--HHHHHHTTTTEEEEEEETTTCCTTSGGG--------TCCSSSEEEEE-ETT
T ss_pred HhcCCEEEEEEECCCCHHHHHHhHH-H--HHHHHHhcCCeEEEEEECCCCHHHHHHc--------CCCccCEEEEE-eCC
Confidence 5789999999999999999999864 3 4677777767999999999988877666 88999999999 899
Q ss_pred ceecc
Q 003940 215 KPLMG 219 (784)
Q Consensus 215 ~pi~~ 219 (784)
+++..
T Consensus 105 ~~~~~ 109 (128)
T 2o8v_B 105 EVAAT 109 (128)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98764
No 74
>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A
Probab=98.97 E-value=7.7e-10 Score=106.10 Aligned_cols=78 Identities=12% Similarity=0.095 Sum_probs=63.1
Q ss_pred HHHHHHHh--hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003940 128 EEAFAEAR--KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 128 ~eal~~Ak--~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P 205 (784)
.+.++.+. +++|||+|+|+++||+.|+.|... + .++++.+.+.+..++||.++.+++.+.| ++.++|
T Consensus 11 ~~~~~~~i~~~~~k~vlv~F~a~WC~~C~~~~p~-l--~~l~~~~~~~~~~~~vd~d~~~~l~~~~--------~v~~~P 79 (149)
T 3gix_A 11 KKEVDQAIKSTAEKVLVLRFGRDEDPVCLQLDDI-L--SKTSSDLSKMAAIYLVDVDQTAVYTQYF--------DISYIP 79 (149)
T ss_dssp HHHHHHHHHHCCSSEEEEEEECTTSHHHHHHHHH-H--HHHHTTTTTTEEEEEEETTTCCHHHHHT--------TCCSSS
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHccCceEEEEEECCcCHHHHHHc--------CCCccC
Confidence 44555554 579999999999999999999863 3 2566666656999999999999988776 889999
Q ss_pred cEEEECCCCcee
Q 003940 206 LSVFLSPDLKPL 217 (784)
Q Consensus 206 ~~vfl~pdg~pi 217 (784)
+++ +..+|+++
T Consensus 80 t~~-~~~~G~~v 90 (149)
T 3gix_A 80 STV-FFFNGQHM 90 (149)
T ss_dssp EEE-EEETTEEE
T ss_pred eEE-EEECCeEE
Confidence 999 55789988
No 75
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=98.96 E-value=1.1e-09 Score=103.65 Aligned_cols=80 Identities=16% Similarity=0.199 Sum_probs=67.1
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
.+.++.+.+++|||+|.|+++||++|+.|... | .++++.++.++..++||.++.+++.+.| ++.|+|++
T Consensus 45 ~~~~~~~~~~~k~vlv~F~a~wC~~C~~~~p~-l--~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~ 113 (148)
T 3p2a_A 45 AETLDKLLQDDLPMVIDFWAPWCGPCRSFAPI-F--AETAAERAGKVRFVKVNTEAEPALSTRF--------RIRSIPTI 113 (148)
T ss_dssp TTTHHHHTTCSSCEEEEEECSSCHHHHHHHHH-H--HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHhcCCcEEEEEECCCCHHHHHHHHH-H--HHHHHHcCCceEEEEEECcCCHHHHHHC--------CCCccCEE
Confidence 45566666899999999999999999999763 3 4677777778999999999999887766 89999999
Q ss_pred EEECCCCceecc
Q 003940 208 VFLSPDLKPLMG 219 (784)
Q Consensus 208 vfl~pdg~pi~~ 219 (784)
+|+ .+|+++..
T Consensus 114 ~~~-~~G~~~~~ 124 (148)
T 3p2a_A 114 MLY-RNGKMIDM 124 (148)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-ECCeEEEE
Confidence 998 58988764
No 76
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=98.96 E-value=1.2e-09 Score=105.25 Aligned_cols=80 Identities=21% Similarity=0.306 Sum_probs=68.6
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
++.++.+.+.+||++|+|+++||+.|+.|.. .| .++++.+..++..++||.++.+++.+.| ++.++|++
T Consensus 54 ~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p-~l--~~la~~~~~~v~~~~vd~~~~~~l~~~~--------~i~~~Pt~ 122 (155)
T 2ppt_A 54 PAILARAERDDLPLLVDFWAPWCGPCRQMAP-QF--QAAAATLAGQVRLAKIDTQAHPAVAGRH--------RIQGIPAF 122 (155)
T ss_dssp HHHHHHHTTCSSCEEEEEECTTCHHHHHHHH-HH--HHHHHHHTTTCEEEEEETTTSTHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHHHHH-HH--HHHHHHccCCEEEEEEeCCccHHHHHHc--------CCCcCCEE
Confidence 5677777688999999999999999999986 44 4788888777999999999999887766 89999999
Q ss_pred EEECCCCceecc
Q 003940 208 VFLSPDLKPLMG 219 (784)
Q Consensus 208 vfl~pdg~pi~~ 219 (784)
+|+ .+|+++..
T Consensus 123 ~~~-~~G~~~~~ 133 (155)
T 2ppt_A 123 ILF-HKGRELAR 133 (155)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-eCCeEEEE
Confidence 999 79998754
No 77
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=98.96 E-value=8.3e-10 Score=101.24 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=65.4
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcc-cEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~-FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
.+.++++.+++|+++|.|+++||++|+.|... | .++++.+... +..++||.++.+++.+.| ++.++|+
T Consensus 23 ~~~f~~~l~~~k~vvv~f~a~~C~~C~~~~~~-l--~~l~~~~~~~~v~~~~vd~d~~~~~~~~~--------~v~~~Pt 91 (121)
T 2j23_A 23 YDQFKQVTGGDKVVVIDFWATWCGPCKMIGPV-F--EKISDTPAGDKVGFYKVDVDEQSQIAQEV--------GIRAMPT 91 (121)
T ss_dssp HHHHHHHHSSSSCEEEEEECTTCSTHHHHHHH-H--HHHHTSTHHHHSEEEEEETTTCHHHHHHH--------TCCSSSE
T ss_pred HHHHHHHHcCCCEEEEEEECCCCHhHHHHHHH-H--HHHHHHCcCCcEEEEEEECcCCHHHHHHc--------CCCcccE
Confidence 56677777899999999999999999999864 3 3555555443 999999999988887766 8899999
Q ss_pred EEEECCCCceecc
Q 003940 207 SVFLSPDLKPLMG 219 (784)
Q Consensus 207 ~vfl~pdg~pi~~ 219 (784)
++|+ ++|+++..
T Consensus 92 ~~~~-~~G~~~~~ 103 (121)
T 2j23_A 92 FVFF-KNGQKIDT 103 (121)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-ECCeEEee
Confidence 9988 58998764
No 78
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=98.95 E-value=7.2e-10 Score=100.96 Aligned_cols=79 Identities=18% Similarity=0.191 Sum_probs=65.0
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
.+.++.+.+++|+++|.|+++||++|+.|... + .++++.+. ++..++||.++.+++.+.| ++.++|++
T Consensus 20 ~~~~~~~~~~~k~vvv~F~a~wC~~C~~~~p~-l--~~~~~~~~-~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~ 87 (114)
T 2oe3_A 20 LTEFRNLIKQNDKLVIDFYATWCGPCKMMQPH-L--TKLIQAYP-DVRFVKCDVDESPDIAKEC--------EVTAMPTF 87 (114)
T ss_dssp HHHHHHHHHHCSEEEEEEECTTCHHHHHTHHH-H--HHHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSBSEE
T ss_pred HHHHHHHHhCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHCC-CCEEEEEECCCCHHHHHHC--------CCCcccEE
Confidence 67788888899999999999999999999863 3 35555554 3899999999888877665 88999999
Q ss_pred EEECCCCceecc
Q 003940 208 VFLSPDLKPLMG 219 (784)
Q Consensus 208 vfl~pdg~pi~~ 219 (784)
+|+ ++|+++..
T Consensus 88 ~~~-~~G~~~~~ 98 (114)
T 2oe3_A 88 VLG-KDGQLIGK 98 (114)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-eCCeEEEE
Confidence 887 89998754
No 79
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=98.95 E-value=7.5e-10 Score=96.67 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=62.8
Q ss_pred HHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003940 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~v 208 (784)
+.++.+.+++|+++|.|+++||++|+.|.. .+ .++++.+.+ +..++||.++.+++.+.| ++.++|+++
T Consensus 7 ~~~~~~~~~~~~~~v~f~~~~C~~C~~~~~-~~--~~~~~~~~~-~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~ 74 (104)
T 2e0q_A 7 KNFDSFLASHEIAVVDFWAEWCAPCLILAP-II--EELAEDYPQ-VGFGKLNSDENPDIAARY--------GVMSLPTVI 74 (104)
T ss_dssp TTHHHHHHHSSEEEEEEECTTCHHHHHHHH-HH--HHHHHHCTT-SEEEEEETTTCHHHHHHT--------TCCSSCEEE
T ss_pred HHHHHHHhcCCcEEEEEECCCChhHHHHhH-HH--HHHHHHcCC-ceEEEEECCCCHHHHHhC--------CccccCEEE
Confidence 345555577999999999999999999976 33 356666654 899999999888776665 889999999
Q ss_pred EECCCCceecc
Q 003940 209 FLSPDLKPLMG 219 (784)
Q Consensus 209 fl~pdg~pi~~ 219 (784)
|+ ++|+++..
T Consensus 75 ~~-~~g~~~~~ 84 (104)
T 2e0q_A 75 FF-KDGEPVDE 84 (104)
T ss_dssp EE-ETTEEEEE
T ss_pred EE-ECCeEhhh
Confidence 99 89998754
No 80
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=98.95 E-value=1.6e-09 Score=100.69 Aligned_cols=78 Identities=18% Similarity=0.119 Sum_probs=63.3
Q ss_pred HHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003940 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~v 208 (784)
+.++.+.+++||++|.|+++||++|+.|... | .++++.+ .++..++||.++.+++.+.| ++.++|+++
T Consensus 28 ~~f~~~~~~~k~vvv~F~a~wC~~C~~~~p~-l--~~l~~~~-~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt~~ 95 (125)
T 1r26_A 28 EQFRNIMSEDILTVAWFTAVWCGPCKTIERP-M--EKIAYEF-PTVKFAKVDADNNSEIVSKC--------RVLQLPTFI 95 (125)
T ss_dssp HHHHHHHHSSSCEEEEEECTTCHHHHHTHHH-H--HHHHHHC-TTSEEEEEETTTCHHHHHHT--------TCCSSSEEE
T ss_pred HHHHHHHccCCEEEEEEECCcCHhHHHHHHH-H--HHHHHHC-CCCEEEEEECCCCHHHHHHc--------CCCcccEEE
Confidence 4555555789999999999999999999864 3 3466655 46999999999988877666 889999988
Q ss_pred EECCCCceecc
Q 003940 209 FLSPDLKPLMG 219 (784)
Q Consensus 209 fl~pdg~pi~~ 219 (784)
|+ ++|+++..
T Consensus 96 i~-~~G~~~~~ 105 (125)
T 1r26_A 96 IA-RSGKMLGH 105 (125)
T ss_dssp EE-ETTEEEEE
T ss_pred EE-eCCeEEEE
Confidence 87 89998754
No 81
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=98.94 E-value=1.4e-09 Score=95.84 Aligned_cols=71 Identities=21% Similarity=0.271 Sum_probs=59.7
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~p 216 (784)
++||++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|+++++ ++|++
T Consensus 19 ~~~~~vv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~ 86 (106)
T 1xwb_A 19 SGKLVVLDFFATWCGPCKMISPK-L--VELSTQFADNVVVLKVDVDECEDIAMEY--------NISSMPTFVFL-KNGVK 86 (106)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTEEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEE
T ss_pred CCCEEEEEEECCcCHHHHHhhHH-H--HHHHHHhCCCeEEEEEeccchHHHHHHc--------CCCcccEEEEE-cCCcE
Confidence 79999999999999999999863 4 3677777668999999999888877665 88999998877 78988
Q ss_pred ecc
Q 003940 217 LMG 219 (784)
Q Consensus 217 i~~ 219 (784)
+..
T Consensus 87 ~~~ 89 (106)
T 1xwb_A 87 VEE 89 (106)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
No 82
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=98.94 E-value=1.2e-09 Score=97.67 Aligned_cols=73 Identities=21% Similarity=0.261 Sum_probs=62.8
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg 214 (784)
.+.+||++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|+++|+ ++|
T Consensus 22 ~~~~~~~lv~f~~~~C~~C~~~~~~-l--~~~~~~~~~~v~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 89 (115)
T 1thx_A 22 LKAEQPVLVYFWASWCGPCQLMSPL-I--NLAANTYSDRLKVVKLEIDPNPTTVKKY--------KVEGVPALRLV-KGE 89 (115)
T ss_dssp TTCSSCEEEEEECTTCTTHHHHHHH-H--HHHHHHTTTTCEEEEEESTTCHHHHHHT--------TCCSSSEEEEE-ETT
T ss_pred hcCCceEEEEEECCCCHHHHHhHHH-H--HHHHHHhCCcEEEEEEEcCCCHHHHHHc--------CCCceeEEEEE-cCC
Confidence 5789999999999999999999874 4 5777777767999999999888877665 88999999999 899
Q ss_pred ceecc
Q 003940 215 KPLMG 219 (784)
Q Consensus 215 ~pi~~ 219 (784)
+++..
T Consensus 90 ~~~~~ 94 (115)
T 1thx_A 90 QILDS 94 (115)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98764
No 83
>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A
Probab=98.94 E-value=1.4e-09 Score=104.07 Aligned_cols=79 Identities=18% Similarity=0.210 Sum_probs=63.2
Q ss_pred HHHHHHHhhc--CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003940 128 EEAFAEARKR--DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 128 ~eal~~Ak~e--~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P 205 (784)
.+.++.+.++ +|+++|.|+++||++|+.|... | .++++.. .++..++||.++.+++.+.| ++.|+|
T Consensus 20 ~~~~~~~~~~~~~~~vvv~F~a~wC~~C~~~~p~-l--~~l~~~~-~~v~~~~vd~~~~~~l~~~~--------~v~~~P 87 (153)
T 2wz9_A 20 AGQFEELLRLKAKSLLVVHFWAPWAPQCAQMNEV-M--AELAKEL-PQVSFVKLEAEGVPEVSEKY--------EISSVP 87 (153)
T ss_dssp HHHHHHHHHHTTTSCEEEEEECTTCHHHHHHHHH-H--HHHHHHC-TTSEEEEEETTTSHHHHHHT--------TCCSSS
T ss_pred HHHHHHHHHhcCCCeEEEEEECCCCHhHHHHHHH-H--HHHHHHc-CCeEEEEEECCCCHHHHHHc--------CCCCCC
Confidence 4555555555 9999999999999999999863 3 3455544 47999999999988877665 899999
Q ss_pred cEEEECCCCceecc
Q 003940 206 LSVFLSPDLKPLMG 219 (784)
Q Consensus 206 ~~vfl~pdg~pi~~ 219 (784)
+++|++ +|+++..
T Consensus 88 t~~~~~-~G~~~~~ 100 (153)
T 2wz9_A 88 TFLFFK-NSQKIDR 100 (153)
T ss_dssp EEEEEE-TTEEEEE
T ss_pred EEEEEE-CCEEEEE
Confidence 999999 9998754
No 84
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=98.92 E-value=6.7e-10 Score=100.64 Aligned_cols=77 Identities=14% Similarity=0.264 Sum_probs=64.0
Q ss_pred HHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003940 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (784)
Q Consensus 131 l~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl 210 (784)
.+.+.+++||++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|+++|+
T Consensus 23 ~~~~~~~~~~~lv~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~i~~~Pt~~~~ 91 (121)
T 2i1u_A 23 ATDVLSSNKPVLVDFWATWCGPCKMVAPV-L--EEIATERATDLTVAKLDVDTNPETARNF--------QVVSIPTLILF 91 (121)
T ss_dssp HHHTTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE
T ss_pred HHHHHhCCCcEEEEEECCCCHHHHHHHHH-H--HHHHHHhcCCeEEEEEECCCCHHHHHhc--------CCCcCCEEEEE
Confidence 34456789999999999999999999874 4 5777777767999999999888877665 88999999988
Q ss_pred CCCCceecc
Q 003940 211 SPDLKPLMG 219 (784)
Q Consensus 211 ~pdg~pi~~ 219 (784)
++|+++..
T Consensus 92 -~~g~~~~~ 99 (121)
T 2i1u_A 92 -KDGQPVKR 99 (121)
T ss_dssp -ETTEEEEE
T ss_pred -ECCEEEEE
Confidence 58998754
No 85
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=98.91 E-value=2.9e-09 Score=93.40 Aligned_cols=78 Identities=19% Similarity=0.207 Sum_probs=61.3
Q ss_pred HHHHHHhh--cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 129 EAFAEARK--RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 129 eal~~Ak~--e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
+.++.+-+ ++||++|.|+++||++|+.|... | .++++.+. ++..++||.++.+++.+.| ++.++|+
T Consensus 8 ~~~~~~l~~~~~~~~~v~f~~~~C~~C~~~~~~-l--~~~~~~~~-~~~~~~v~~~~~~~~~~~~--------~v~~~Pt 75 (104)
T 2vim_A 8 ADLEKLINENKGRLIVVDFFAQWCGPCRNIAPK-V--EALAKEIP-EVEFAKVDVDQNEEAAAKY--------SVTAMPT 75 (104)
T ss_dssp HHHHHHHHTTTTSCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHhhHH-H--HHHHHHCC-CCEEEEEeccCCHHHHHHc--------CCccccE
Confidence 44555544 79999999999999999999863 3 34555554 7999999999888877665 8899999
Q ss_pred EEEECCCCceecc
Q 003940 207 SVFLSPDLKPLMG 219 (784)
Q Consensus 207 ~vfl~pdg~pi~~ 219 (784)
.+++. +|+++..
T Consensus 76 ~~~~~-~g~~~~~ 87 (104)
T 2vim_A 76 FVFIK-DGKEVDR 87 (104)
T ss_dssp EEEEE-TTEEEEE
T ss_pred EEEEe-CCcEEEE
Confidence 88885 8988764
No 86
>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A
Probab=98.89 E-value=2.2e-09 Score=102.02 Aligned_cols=79 Identities=22% Similarity=0.198 Sum_probs=63.3
Q ss_pred HHHHHHHh-h-cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003940 128 EEAFAEAR-K-RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 128 ~eal~~Ak-~-e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P 205 (784)
.+.++.+- + ++|||+|+|+++||+.|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|
T Consensus 11 ~~~~~~~v~~~~~k~vlv~F~a~wC~~C~~~~p~-l--~~l~~~~~~~v~~~~vd~d~~~~~~~~~--------~i~~~P 79 (142)
T 1qgv_A 11 GWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEV-L--YSIAEKVKNFAVIYLVDITEVPDFNKMY--------ELYDPC 79 (142)
T ss_dssp HHHHHHHHHTCSSSEEEEEEECTTSHHHHHHHHH-H--HHHHHHHTTTEEEEEEETTTCCTTTTSS--------CSCSSC
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHhCCCeEEEEEccccCHHHHHHc--------CCCCCC
Confidence 44455432 2 69999999999999999999863 3 3677777667999999999999887665 889999
Q ss_pred cEEEECCCCceec
Q 003940 206 LSVFLSPDLKPLM 218 (784)
Q Consensus 206 ~~vfl~pdg~pi~ 218 (784)
+++|+ .+|+++.
T Consensus 80 t~~~~-~~G~~v~ 91 (142)
T 1qgv_A 80 TVMFF-FRNKHIM 91 (142)
T ss_dssp EEEEE-ETTEEEE
T ss_pred EEEEE-ECCcEEE
Confidence 99999 5788775
No 87
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=98.88 E-value=3e-09 Score=96.32 Aligned_cols=69 Identities=12% Similarity=0.161 Sum_probs=55.6
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg 214 (784)
.++|+++|.|+++||++|+.|.. .+.++.++ ++..++||.++.+++.+.| ++.|+|+++|+ ++|
T Consensus 31 ~~~~~~vv~f~a~wC~~C~~~~~------~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 95 (117)
T 2xc2_A 31 HKNKLVVVDFFATWCGPCKTIAP------LFKELSEKYDAIFVKVDVDKLEETARKY--------NISAMPTFIAI-KNG 95 (117)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHH------HHHHHHTTSSSEEEEEETTTSHHHHHHT--------TCCSSSEEEEE-ETT
T ss_pred CCCCEEEEEEECCCCHhHHHHhH------HHHHHHHHcCcEEEEEECCccHHHHHHc--------CCCccceEEEE-eCC
Confidence 37999999999999999999975 23333333 6899999999888877665 89999998887 789
Q ss_pred ceecc
Q 003940 215 KPLMG 219 (784)
Q Consensus 215 ~pi~~ 219 (784)
+++..
T Consensus 96 ~~~~~ 100 (117)
T 2xc2_A 96 EKVGD 100 (117)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 88754
No 88
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=98.88 E-value=9e-10 Score=98.90 Aligned_cols=77 Identities=25% Similarity=0.330 Sum_probs=61.8
Q ss_pred HHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh---cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003940 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln---~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P 205 (784)
+.++.+.+++|+++|.|+++||++|+.|.... .++++.+. .+++.++||.++.+++.+.| ++.++|
T Consensus 15 ~~~~~~~~~~~~~lv~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~P 83 (120)
T 1mek_A 15 SNFAEALAAHKYLLVEFYAPWCGHCKALAPEY---AKAAGKLKAEGSEIRLAKVDATEESDLAQQY--------GVRGYP 83 (120)
T ss_dssp TTHHHHHHHCSEEEEEEECSSCSTTSTTHHHH---HHHHHTTTTTCCCCBCEEEETTTCCSSHHHH--------TCCSSS
T ss_pred hhHHHHHccCCeEEEEEECCCCHHHHHhhHHH---HHHHHHHhccCCcEEEEEEcCCCCHHHHHHC--------CCCccc
Confidence 44555666899999999999999999998643 24555554 36899999999988887776 889999
Q ss_pred cEEEECCCCcee
Q 003940 206 LSVFLSPDLKPL 217 (784)
Q Consensus 206 ~~vfl~pdg~pi 217 (784)
+++|+ .+|+.+
T Consensus 84 t~~~~-~~g~~~ 94 (120)
T 1mek_A 84 TIKFF-RNGDTA 94 (120)
T ss_dssp EEEEE-ESSCSS
T ss_pred EEEEE-eCCCcC
Confidence 99999 688765
No 89
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=98.87 E-value=4.5e-09 Score=105.85 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=68.1
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
.+.++.+...+|+|+|.|+++||+.|+.|... | .++++.++.++..++||.++.+++.+.| ++.|+|++
T Consensus 104 ~~~f~~~~~~~~~vlv~F~a~wC~~C~~~~p~-~--~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~ 172 (210)
T 3apq_A 104 RREFDAAVNSGELWFVNFYSPGCSHCHDLAPT-W--REFAKEVDGLLRIGAVNCGDDRMLCRMK--------GVNSYPSL 172 (210)
T ss_dssp HHHHHHHHHHSCCEEEEEECTTCHHHHHHHHH-H--HHHHHHTBTTBEEEEEETTTCHHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHccCCcEEEEEeCCCChhHHHHHHH-H--HHHHHHhcCceEEEEEECCccHHHHHHc--------CCCcCCeE
Confidence 56777777889999999999999999999873 3 5788888777999999999988777665 89999999
Q ss_pred EEECCCCceecc
Q 003940 208 VFLSPDLKPLMG 219 (784)
Q Consensus 208 vfl~pdg~pi~~ 219 (784)
+|+ ++|+++..
T Consensus 173 ~~~-~~G~~~~~ 183 (210)
T 3apq_A 173 FIF-RSGMAAVK 183 (210)
T ss_dssp EEE-CTTSCCEE
T ss_pred EEE-ECCCceeE
Confidence 999 89987654
No 90
>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.87 E-value=2.6e-09 Score=98.64 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=57.4
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh--cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln--~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (784)
+++|||+|.|+++||++|+.|... | .++++.+. .+++.++||.++.+.+.+.| ++.++|+++|++++
T Consensus 23 ~~~~~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~~~g 91 (133)
T 2dj3_A 23 DPKKDVLIEFYAPWCGHCKQLEPI-Y--TSLGKKYKGQKDLVIAKMDATANDITNDQY--------KVEGFPTIYFAPSG 91 (133)
T ss_dssp CTTSEEEEEECCTTCSHHHHHHHH-H--HHHHHHHTTSSSEEEEEECTTTSCCCCSSC--------CCSSSSEEEEECTT
T ss_pred cCCCcEEEEEECCCChhHHHHHHH-H--HHHHHHhcCCCCEEEEEecCCcCHHHHhhc--------CCCcCCEEEEEeCC
Confidence 358999999999999999999874 4 46777776 46999999999888775544 88999999999876
Q ss_pred Cc
Q 003940 214 LK 215 (784)
Q Consensus 214 g~ 215 (784)
++
T Consensus 92 ~~ 93 (133)
T 2dj3_A 92 DK 93 (133)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 91
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=98.85 E-value=5.3e-09 Score=93.63 Aligned_cols=70 Identities=19% Similarity=0.143 Sum_probs=55.9
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~e-e~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~ 215 (784)
.+||++|.|+++||++|+.|... | .++++.+. ++..++||.+ +.+++.+.| ++.|+|++ ++.++|+
T Consensus 23 ~~~~vlv~f~a~wC~~C~~~~~~-l--~~~~~~~~-~v~~~~vd~~~~~~~~~~~~--------~v~~~Pt~-~~~~~G~ 89 (111)
T 2pu9_C 23 GDKPVVLDMFTQWCGPSKAMAPK-Y--EKLAEEYL-DVIFLKLDCNQENKTLAKEL--------GIRVVPTF-KILKENS 89 (111)
T ss_dssp TTSCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEECSSTTHHHHHHH--------CCSBSSEE-EEESSSS
T ss_pred CCCEEEEEEECCcCHhHHHHCHH-H--HHHHHHCC-CeEEEEEecCcchHHHHHHc--------CCCeeeEE-EEEeCCc
Confidence 68999999999999999999864 3 35565554 5899999998 677777666 89999995 4568999
Q ss_pred eecc
Q 003940 216 PLMG 219 (784)
Q Consensus 216 pi~~ 219 (784)
++..
T Consensus 90 ~~~~ 93 (111)
T 2pu9_C 90 VVGE 93 (111)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8754
No 92
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.85 E-value=4e-09 Score=110.68 Aligned_cols=72 Identities=17% Similarity=0.299 Sum_probs=62.0
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~ 215 (784)
..+|||+|+|+++||+.|+.|.. .| .++++.+..+++.++||.++.|++.+.| ++.|+||++|+ .+|+
T Consensus 24 ~~~~~v~v~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~ 91 (287)
T 3qou_A 24 SMTTPVLFYFWSERSQHCLQLTP-IL--ESLAAQYNGQFILAKLDCDAEQMIAAQF--------GLRAIPTVYLF-QNGQ 91 (287)
T ss_dssp TTTSCEEEEEECTTCTTTTTTHH-HH--HHHHHHHTSSSEEEEEETTTCHHHHHTT--------TCCSSSEEEEE-ETTE
T ss_pred cCCCeEEEEEECCCChHHHHHHH-HH--HHHHHHcCCCeEEEEEeCccCHHHHHHc--------CCCCCCeEEEE-ECCE
Confidence 45999999999999999999986 34 4777778777999999999998887666 89999999999 7899
Q ss_pred eecc
Q 003940 216 PLMG 219 (784)
Q Consensus 216 pi~~ 219 (784)
++..
T Consensus 92 ~~~~ 95 (287)
T 3qou_A 92 PVDG 95 (287)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8764
No 93
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=98.85 E-value=1.8e-09 Score=101.05 Aligned_cols=76 Identities=14% Similarity=0.273 Sum_probs=56.0
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
++.++ ...+|||+|.|+++||++|+.|.. .+.++.++ +++.++||.++.+++.+.| ++.|+|+
T Consensus 32 ~~~l~--~~~~k~vvv~F~a~wC~~C~~~~p------~l~~l~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt 95 (133)
T 3cxg_A 32 NQVFS--STQNSSIVIKFGAVWCKPCNKIKE------YFKNQLNYYYVTLVDIDVDIHPKLNDQH--------NIKALPT 95 (133)
T ss_dssp HHHHT--C-CCSEEEEEEECTTCHHHHHTHH------HHHGGGGTEECEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHH--hcCCCEEEEEEECCCCHHHHHHHH------HHHHHHHhcCEEEEEEeccchHHHHHhc--------CCCCCCE
Confidence 44443 334899999999999999999864 22222222 4789999999988877665 8999999
Q ss_pred EEEE-CCCCc--eecc
Q 003940 207 SVFL-SPDLK--PLMG 219 (784)
Q Consensus 207 ~vfl-~pdg~--pi~~ 219 (784)
++|+ +++|+ ++..
T Consensus 96 ~~~~~~~~g~g~~~~~ 111 (133)
T 3cxg_A 96 FEFYFNLNNEWVLVHT 111 (133)
T ss_dssp EEEEEEETTEEEEEEE
T ss_pred EEEEEecCCCeEEEEE
Confidence 9999 55666 6543
No 94
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=98.85 E-value=1.7e-09 Score=97.51 Aligned_cols=80 Identities=21% Similarity=0.175 Sum_probs=60.6
Q ss_pred HHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003940 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (784)
Q Consensus 133 ~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~p 212 (784)
.+..++|+++|.|+++||++|+.|... + .++++.. .++..++||.++.+++.+.| ++.++|+++|+ .
T Consensus 14 ~~~~~~~~~vv~f~a~wC~~C~~~~~~-l--~~~~~~~-~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~-~ 80 (110)
T 2l6c_A 14 AHFEGLSDAIVFFHKNLCPHCKNMEKV-L--DKFGARA-PQVAISSVDSEARPELMKEL--------GFERVPTLVFI-R 80 (110)
T ss_dssp HHHTTCSEEEEEEECSSCSTHHHHHHH-H--HHHHTTC-TTSCEEEEEGGGCHHHHHHT--------TCCSSCEEEEE-E
T ss_pred HHHHcCCCEEEEEECCCCHhHHHHHHH-H--HHHHHHC-CCcEEEEEcCcCCHHHHHHc--------CCcccCEEEEE-E
Confidence 455678999999999999999999752 2 2233322 25788899998888877665 89999999999 8
Q ss_pred CCceeccc-cccCC
Q 003940 213 DLKPLMGG-TYFPP 225 (784)
Q Consensus 213 dg~pi~~~-tY~p~ 225 (784)
+|+++... +++++
T Consensus 81 ~G~~v~~~~G~~~~ 94 (110)
T 2l6c_A 81 DGKVAKVFSGIMNP 94 (110)
T ss_dssp SSSEEEEEESCCCH
T ss_pred CCEEEEEEcCCCCH
Confidence 99988653 44553
No 95
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.80 E-value=4.8e-09 Score=106.73 Aligned_cols=80 Identities=16% Similarity=0.272 Sum_probs=65.9
Q ss_pred HHHHHH-HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAFAE-ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal~~-Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
++.|.. ..+++|||+|.|+++||+.|+.|.... .++++.+..++..++||.++.+++.+.| ++.|+|+
T Consensus 19 ~~~f~~~v~~~~k~vvv~F~a~wC~~C~~~~p~l---~~l~~~~~~~v~~~~vd~d~~~~l~~~~--------~v~~~Pt 87 (222)
T 3dxb_A 19 DDSFDTDVLKADGAILVDFWAEWCGPCKMIAPIL---DEIADEYQGKLTVAKLNIDQNPGTAPKY--------GIRGIPT 87 (222)
T ss_dssp TTTHHHHHTTCSSCEEEEEECTTCHHHHHHHHHH---HHHHHHTTTTCEEEEEETTTCTTTGGGG--------TCCSBSE
T ss_pred HHHHHHHHHhcCCEEEEEEECCcCHHHHHHHHHH---HHHHHHhcCCcEEEEEECCCCHHHHHHc--------CCCcCCE
Confidence 444544 367899999999999999999998633 5778888777999999999999887766 8999999
Q ss_pred EEEECCCCceecc
Q 003940 207 SVFLSPDLKPLMG 219 (784)
Q Consensus 207 ~vfl~pdg~pi~~ 219 (784)
++|+. +|+++..
T Consensus 88 ~~~~~-~G~~~~~ 99 (222)
T 3dxb_A 88 LLLFK-NGEVAAT 99 (222)
T ss_dssp EEEEE-TTEEEEE
T ss_pred EEEEE-CCeEEEE
Confidence 99985 8888754
No 96
>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1
Probab=98.80 E-value=1.9e-09 Score=98.01 Aligned_cols=85 Identities=20% Similarity=0.242 Sum_probs=57.1
Q ss_pred hHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 127 GEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 127 ~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
..+.++.+.+++||++|.|+++||++|+.|... + .++++..+..++.| |.+...+.+. .....+. +|+.|+|+
T Consensus 18 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~-l--~~~~~~~~~~v~~~--~~~~~~~~~~-~~~~~~~-~~i~~~Pt 90 (118)
T 1zma_A 18 TVVRAQEALDKKETATFFIGRKTCPYCRKFAGT-L--SGVVAETKAHIYFI--NSEEPSQLND-LQAFRSR-YGIPTVPG 90 (118)
T ss_dssp CHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHH-H--HHHHHHHCCCCEEE--ETTCGGGHHH-HHHHHHH-HTCCSSCE
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCccHHHHHHH-H--HHHHHhcCCeEEEE--ECCCcCcHHH-HHHHHHH-cCCCCCCe
Confidence 456777777889999999999999999999863 3 24555454345554 4443333332 1122222 38999999
Q ss_pred EEEECCCCceecc
Q 003940 207 SVFLSPDLKPLMG 219 (784)
Q Consensus 207 ~vfl~pdg~pi~~ 219 (784)
++|+ .+|+++..
T Consensus 91 ~~~~-~~G~~~~~ 102 (118)
T 1zma_A 91 FVHI-TDGQINVR 102 (118)
T ss_dssp EEEE-ETTEEEEE
T ss_pred EEEE-ECCEEEEE
Confidence 9999 48887754
No 97
>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.4e-08 Score=94.80 Aligned_cols=81 Identities=16% Similarity=0.088 Sum_probs=63.8
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCC------CCCc
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGG------GWPL 206 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~------G~P~ 206 (784)
++.++|||+|.|+++||+.|+.|.. .| .++++.+.. ++..++||.++.+++.+.| ++. ++|+
T Consensus 22 ~~~~~~~vlv~f~a~wC~~C~~~~p-~~--~~l~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~~~~~~~Pt 90 (137)
T 2dj0_A 22 ERDKRVTWIVEFFANWSNDCQSFAP-IY--ADLSLKYNCTGLNFGKVDVGRYTDVSTRY--------KVSTSPLTKQLPT 90 (137)
T ss_dssp HHSTTSCEEEEECCTTCSTTTTTHH-HH--HHHHHHHCSSSCEEEECCTTTCHHHHHHT--------TCCCCSSSSCSSE
T ss_pred hcCCCCEEEEEEECCCCHHHHHHHH-HH--HHHHHHhCCCCeEEEEEeCccCHHHHHHc--------cCcccCCcCCCCE
Confidence 3455679999999999999999986 34 367777764 7999999999988877665 776 9999
Q ss_pred EEEECCCCceecc-ccccCCC
Q 003940 207 SVFLSPDLKPLMG-GTYFPPE 226 (784)
Q Consensus 207 ~vfl~pdg~pi~~-~tY~p~~ 226 (784)
++|+ .+|+++.. .++.+.+
T Consensus 91 ~~~~-~~G~~~~~~~G~~~~~ 110 (137)
T 2dj0_A 91 LILF-QGGKEAMRRPQIDKKG 110 (137)
T ss_dssp EEEE-SSSSEEEEESCBCSSS
T ss_pred EEEE-ECCEEEEEecCcCchH
Confidence 9999 78998754 3445543
No 98
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=98.78 E-value=1.1e-08 Score=93.29 Aligned_cols=71 Identities=21% Similarity=0.221 Sum_probs=56.0
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~e-e~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg 214 (784)
.++||++|.|+++||++|+.|... + .++++... ++..++||.+ +.+++.+.| ++.|+|+++|+ ++|
T Consensus 35 ~~~~~~vv~f~a~wC~~C~~~~~~-l--~~~~~~~~-~~~~~~vd~~~~~~~~~~~~--------~v~~~Pt~~~~-~~G 101 (124)
T 1faa_A 35 AGDKPVVLDMFTQWCGPCKAMAPK-Y--EKLAEEYL-DVIFLKLDCNQENKTLAKEL--------GIRVVPTFKIL-KEN 101 (124)
T ss_dssp TTTSCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEECSSTTHHHHHHH--------CCSSSSEEEEE-ETT
T ss_pred cCCCEEEEEEECCcCHhHHHHhHH-H--HHHHHHCC-CCEEEEEecCcchHHHHHHc--------CCCeeeEEEEE-eCC
Confidence 479999999999999999999864 3 35555553 5889999997 567776666 89999996655 889
Q ss_pred ceecc
Q 003940 215 KPLMG 219 (784)
Q Consensus 215 ~pi~~ 219 (784)
+++..
T Consensus 102 ~~~~~ 106 (124)
T 1faa_A 102 SVVGE 106 (124)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 98754
No 99
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=98.25 E-value=7.4e-10 Score=97.04 Aligned_cols=75 Identities=21% Similarity=0.319 Sum_probs=61.7
Q ss_pred HHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003940 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (784)
Q Consensus 133 ~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~p 212 (784)
.+.+.+||++|.|+++||++|+.|.. .+ .++++.+..++..++||.++.+++.+.| ++.++|+++++ +
T Consensus 14 ~~~~~~~~~~v~f~~~~C~~C~~~~~-~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~--------~v~~~Pt~~~~-~ 81 (106)
T 2yj7_A 14 EVLKSDKPVLVDFWAPWCGPCRMIAP-II--EELAKEYEGKVKVVKVNVDENPNTAAQY--------GIRSIPTLLLF-K 81 (106)
Confidence 44578999999999999999999976 33 4667777667888999998888777666 78899999999 8
Q ss_pred CCceecc
Q 003940 213 DLKPLMG 219 (784)
Q Consensus 213 dg~pi~~ 219 (784)
+|+++..
T Consensus 82 ~g~~~~~ 88 (106)
T 2yj7_A 82 NGQVVDR 88 (106)
Confidence 9988754
No 100
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=98.77 E-value=1.5e-08 Score=89.98 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=54.2
Q ss_pred CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh------cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN------DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln------~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~ 211 (784)
+|+++|.|+++||+.|+.|.. .+.++.. .++..++||.++.+++.+.| ++.++|+++|+
T Consensus 21 ~~~~lv~f~~~~C~~C~~~~~------~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~- 85 (111)
T 3uvt_A 21 EGITFIKFYAPWCGHCKTLAP------TWEELSKKEFPGLAGVKIAEVDCTAERNICSKY--------SVRGYPTLLLF- 85 (111)
T ss_dssp SSEEEEEEECSSCHHHHHHHH------HHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-
T ss_pred CCcEEEEEECCCChhHHHhhH------HHHHHHHHhhccCCceEEEEEeccccHhHHHhc--------CCCcccEEEEE-
Confidence 899999999999999999975 3333333 25888999999888877665 89999999888
Q ss_pred CCCceecc
Q 003940 212 PDLKPLMG 219 (784)
Q Consensus 212 pdg~pi~~ 219 (784)
.+|+.+..
T Consensus 86 ~~g~~~~~ 93 (111)
T 3uvt_A 86 RGGKKVSE 93 (111)
T ss_dssp ETTEEEEE
T ss_pred eCCcEEEe
Confidence 78887654
No 101
>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0
Probab=98.77 E-value=1.2e-08 Score=93.96 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=56.5
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHH-----hcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEE
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL-----NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFL 210 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~l-----n~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl 210 (784)
+.+|+|+|.|+++||+.|+.|.. .|+ ++++.+ +.+++.++||.++.+++.+.| ++.|+|+++|+
T Consensus 31 ~~~~~vlv~F~a~wC~~C~~~~p-~~~--~la~~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~~~ 99 (127)
T 3h79_A 31 DPEKDVFVLYYVPWSRHSVAAMR-LWD--DLSMSQSQKRNHLTFVAARIDGEKYPDVIERM--------RVSGFPTMRYY 99 (127)
T ss_dssp CTTCEEEEEEECTTCHHHHHHHH-HHH--HHHHHHHTSTTTTTEEEEEEETTTCHHHHHHT--------TCCSSSEEEEE
T ss_pred CCCCCEEEEEECCccHHHHHHhH-HHH--HHHHHHHhcccCCCeEEEEEEccccHhHHHhc--------CCccCCEEEEE
Confidence 56999999999999999999986 443 454443 246999999999988887766 89999999999
Q ss_pred CCCCc
Q 003940 211 SPDLK 215 (784)
Q Consensus 211 ~pdg~ 215 (784)
.++++
T Consensus 100 ~~g~~ 104 (127)
T 3h79_A 100 TRIDK 104 (127)
T ss_dssp CSSCS
T ss_pred eCCCC
Confidence 87665
No 102
>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=98.76 E-value=5.1e-09 Score=99.84 Aligned_cols=95 Identities=11% Similarity=-0.014 Sum_probs=70.3
Q ss_pred CCcccccchHHHHHHH-hhcCCcEEEEEcccCC--hhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHH
Q 003940 119 NPVDWFAWGEEAFAEA-RKRDVPIFLSIGYSTC--HWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYV 195 (784)
Q Consensus 119 ~~v~W~~~~~eal~~A-k~e~KpI~l~~~~~wC--~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~ 195 (784)
+.-.|..-.++-|+.- .+.++||+|+|+++|| +.|+.|.- ++ +++++.+...+..+|||+++.|++...|
T Consensus 13 ~~~g~~~vt~~~F~~~v~~~~~~vlVdF~A~wCr~gpCk~iaP-vl--eela~e~~~~v~~~KVdvDe~~~la~~y---- 85 (137)
T 2qsi_A 13 RPNAPTLVDEATVDDFIAHSGKIVVLFFRGDAVRFPEAADLAV-VL--PELINAFPGRLVAAEVAAEAERGLMARF---- 85 (137)
T ss_dssp ----CEEECTTTHHHHHHTSSSEEEEEECCCTTTCTTHHHHHH-HH--HHHHHTSTTTEEEEEECGGGHHHHHHHH----
T ss_pred HhcCCcccCHhHHHHHHhcCCCcEEEEEeCCccCCCchhhHHh-HH--HHHHHHccCCcEEEEEECCCCHHHHHHc----
Confidence 3334444333444433 3444599999999999 99999986 44 4677777667899999999999999888
Q ss_pred HHhcCCCCCCcEEEECCCCceeccc-cccCC
Q 003940 196 QALYGGGGWPLSVFLSPDLKPLMGG-TYFPP 225 (784)
Q Consensus 196 q~~~g~~G~P~~vfl~pdg~pi~~~-tY~p~ 225 (784)
|+.++||.+|+ .||+++... +..|.
T Consensus 86 ----gV~siPTlilF-kdG~~v~~~vG~~~k 111 (137)
T 2qsi_A 86 ----GVAVCPSLAVV-QPERTLGVIAKIQDW 111 (137)
T ss_dssp ----TCCSSSEEEEE-ECCEEEEEEESCCCH
T ss_pred ----CCccCCEEEEE-ECCEEEEEEeCCCCH
Confidence 99999999999 789998763 45553
No 103
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}
Probab=98.75 E-value=1.3e-08 Score=94.77 Aligned_cols=100 Identities=10% Similarity=0.025 Sum_probs=68.1
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHH-----------------HH
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY-----------------VQ 196 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~-----------------~q 196 (784)
.-.||+|+|.|+++||+.|+.+... ++ ++.+.+.+ ++..|.|+.++.++..+.|.+. +.
T Consensus 28 ~~~gk~vll~f~~~~C~~C~~~~~~-l~--~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 104 (148)
T 3hcz_A 28 DVQAKYTILFFWDSQCGHCQQETPK-LY--DWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFK 104 (148)
T ss_dssp GCCCSEEEEEEECGGGCTTCSHHHH-HH--HHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHH
T ss_pred HcCCCEEEEEEECCCCccHHHHHHH-HH--HHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHH
Confidence 3468999999999999999988652 22 35555554 4888888887666533333321 12
Q ss_pred HhcCCCCCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHHHH
Q 003940 197 ALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAW 245 (784)
Q Consensus 197 ~~~g~~G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~~~ 245 (784)
..+++.++|+++++|++|+++.... |.+.+.++++.+.+.-
T Consensus 105 ~~~~i~~~P~~~lid~~G~i~~~~~--------g~~~~~~~l~~l~~~l 145 (148)
T 3hcz_A 105 ITYDIYATPVLYVLDKNKVIIAKRI--------GYENLDDFLVQYEKSL 145 (148)
T ss_dssp HHHCCCSSCEEEEECTTCBEEEESC--------CGGGHHHHHHHHHHHH
T ss_pred HhcCcCCCCEEEEECCCCcEEEecC--------CHHHHHHHHHHHHHHh
Confidence 2248899999999999999987531 1235667777666543
No 104
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=98.74 E-value=3.7e-09 Score=101.13 Aligned_cols=101 Identities=9% Similarity=0.058 Sum_probs=75.7
Q ss_pred ChhhhcccCCCcccccchHHHHHHHhhcCCcEEEEEcccC--ChhhhhhhhcccCCHHHHHHHhcc-cEEEEEcCCCCcc
Q 003940 110 SPYLLQHAHNPVDWFAWGEEAFAEARKRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPD 186 (784)
Q Consensus 110 SpYL~qha~~~v~W~~~~~eal~~Ak~e~KpI~l~~~~~w--C~wC~~Me~etf~d~eVa~~ln~~-FV~VkvD~ee~pd 186 (784)
||-+++-... .|..-.++-|++--+.++||+|+|+++| |+.|+.|.- ++ +++++.+... +..+|||+++.|+
T Consensus 8 ~pl~~rl~~~--g~~~~t~~~F~~~v~~~~~vlVdF~a~~crCgpCk~iaP-vl--eela~e~~g~~v~~~KVdvDe~~~ 82 (140)
T 2qgv_A 8 DALWQRMLAR--GWTPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPV-MI--GELLHEFPDYTWQVAIADLEQSEA 82 (140)
T ss_dssp HHHHHHHHHT--TCEECCHHHHHHHHHTCSSEEEEECCCTTTCTTTTHHHH-HH--HHHHTTCTTSCCEEEECCHHHHHH
T ss_pred ChHHHHHHhc--CCccCCHHHHHHHHhCCCCEEEEEeCCcccCCcHHHHHh-HH--HHHHHHcCCCeEEEEEEECCCCHH
Confidence 4444433333 4444445666665568899999999999 999999986 33 3666666556 8999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEECCCCceeccc-cccC
Q 003940 187 VDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG-TYFP 224 (784)
Q Consensus 187 i~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~~-tY~p 224 (784)
+...| |+.++||.+|+ .+|+++... +..|
T Consensus 83 lA~~y--------gV~sIPTlilF-k~G~~v~~~~G~~~ 112 (140)
T 2qgv_A 83 IGDRF--------GAFRFPATLVF-TGGNYRGVLNGIHP 112 (140)
T ss_dssp HHHHH--------TCCSSSEEEEE-ETTEEEEEEESCCC
T ss_pred HHHHc--------CCccCCEEEEE-ECCEEEEEEecCCC
Confidence 99988 99999999999 789998763 4444
No 105
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=98.73 E-value=1.3e-08 Score=95.26 Aligned_cols=80 Identities=20% Similarity=0.281 Sum_probs=58.7
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
.+.+..+..+++.++|.|+++||++|+.|... | .++++.+..++..++||.++.+++.+.| ++.++|++
T Consensus 40 ~~~~~~~~~~~~~vvv~f~~~~C~~C~~~~~~-l--~~l~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~ 108 (140)
T 1v98_A 40 EKGFAQEVAGAPLTLVDFFAPWCGPCRLVSPI-L--EELARDHAGRLKVVKVNVDEHPGLAARY--------GVRSVPTL 108 (140)
T ss_dssp ---------CCCEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTEEEEEEETTTCHHHHHHT--------TCCSSSEE
T ss_pred HHHHHHHHHcCCCEEEEEECCCCHHHHHHHHH-H--HHHHHHccCceEEEEEECCCCHHHHHHC--------CCCccCEE
Confidence 45555554344449999999999999999864 4 4677777767999999999888877665 88999999
Q ss_pred EEECCCCceecc
Q 003940 208 VFLSPDLKPLMG 219 (784)
Q Consensus 208 vfl~pdg~pi~~ 219 (784)
+|+ .+|+++..
T Consensus 109 ~~~-~~G~~~~~ 119 (140)
T 1v98_A 109 VLF-RRGAPVAT 119 (140)
T ss_dssp EEE-ETTEEEEE
T ss_pred EEE-eCCcEEEE
Confidence 998 79998754
No 106
>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=1.7e-08 Score=92.53 Aligned_cols=66 Identities=20% Similarity=0.176 Sum_probs=54.9
Q ss_pred cEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003940 140 PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (784)
Q Consensus 140 pI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi 217 (784)
+++|.|+++||+.|+.|... | .++++.+.. ++..++||.++.+++.+.| ++.++|+++|+ ++|++.
T Consensus 24 ~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~~-~~G~~~ 90 (126)
T 1x5e_A 24 DWMIEFYAPWCPACQNLQPE-W--ESFAEWGEDLEVNIAKVDVTEQPGLSGRF--------IINALPTIYHC-KDGEFR 90 (126)
T ss_dssp EEEEEEECSSCHHHHHHHHH-H--HHHHHHHGGGTCEEEEEETTTCHHHHHHT--------TCCSSSEEEEE-ETTEEE
T ss_pred CEEEEEECCCCHHHHHHhHH-H--HHHHHHhccCCeEEEEEECcCCHHHHHHc--------CCcccCEEEEE-eCCeEE
Confidence 49999999999999999863 3 356666664 7999999999888877665 88999999999 889853
No 107
>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A
Probab=98.71 E-value=1.8e-08 Score=91.31 Aligned_cols=67 Identities=18% Similarity=0.289 Sum_probs=55.7
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-----ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEE
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-----WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVF 209 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-----~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vf 209 (784)
..++|+++|.|+++||+.|+.|... | .++++.+.. ++..++||.++.+ +. + ++.++|+++|
T Consensus 22 ~~~~~~vlv~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~v~~~~vd~~~~~-~~-------~---~v~~~Pt~~~ 87 (121)
T 2djj_A 22 LDDTKDVLIEFYAPWCGHCKALAPK-Y--EELGALYAKSEFKDRVVIAKVDATAND-VP-------D---EIQGFPTIKL 87 (121)
T ss_dssp SCTTSCEEEEEECSSCTTHHHHHHH-H--HHHHHHHTTSSCTTSSEEEEEETTTSC-CS-------S---CCSSSSEEEE
T ss_pred hcCCCCEEEEEECCCCHhHHHhhHH-H--HHHHHHHhhcccCCceEEEEEECcccc-cc-------c---ccCcCCeEEE
Confidence 3578999999999999999999874 4 478888875 7999999998765 21 1 7789999999
Q ss_pred ECCCCc
Q 003940 210 LSPDLK 215 (784)
Q Consensus 210 l~pdg~ 215 (784)
++++|+
T Consensus 88 ~~~~~~ 93 (121)
T 2djj_A 88 YPAGAK 93 (121)
T ss_dssp ECSSCT
T ss_pred EeCcCC
Confidence 998877
No 108
>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A
Probab=98.68 E-value=1.8e-08 Score=99.01 Aligned_cols=95 Identities=13% Similarity=0.043 Sum_probs=66.3
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~ 215 (784)
..+|+++|.|+++||+.|+.+.. .++ ++++.. .++..++||+++.+++...|. ..++.++||++|++.+|+
T Consensus 52 ~~~k~vvv~F~A~WC~pC~~~~P-~l~--~l~~~~-~~v~~~~v~~d~~~~~~~~~~-----~~~v~~iPt~i~~~~~G~ 122 (167)
T 1z6n_A 52 IERRYRLLVAGEMWCPDCQINLA-ALD--FAQRLQ-PNIELAIISKGRAEDDLRQRL-----ALERIAIPLVLVLDEEFN 122 (167)
T ss_dssp CCSCEEEEEECCTTCHHHHHHHH-HHH--HHHHHC-TTEEEEEECHHHHHHHTTTTT-----TCSSCCSSEEEEECTTCC
T ss_pred hCCCEEEEEEECCCChhHHHHHH-HHH--HHHHHC-CCcEEEEEECCCCHHHHHHHH-----HcCCCCcCeEEEECCCCC
Confidence 36899999999999999999865 332 344433 367888999988777655552 124789999999999999
Q ss_pred eeccccccCCCCCCCcchHHHHHHHHHHHHh
Q 003940 216 PLMGGTYFPPEDKYGRPGFKTILRKVKDAWD 246 (784)
Q Consensus 216 pi~~~tY~p~~~~~~~~~f~~~L~~i~~~~~ 246 (784)
++...+..|. ...+.++..+..|.
T Consensus 123 ~~~~~g~~p~-------~~~~~i~~~~~~~~ 146 (167)
T 1z6n_A 123 LLGRFVERPQ-------AVLDGGPQALAAYK 146 (167)
T ss_dssp EEEEEESSCH-------HHHHHCHHHHHHHH
T ss_pred EEEEEcCCCH-------HHHHhHHHHHHHHH
Confidence 8754333442 34555555555554
No 109
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Probab=98.67 E-value=4.6e-08 Score=90.73 Aligned_cols=85 Identities=12% Similarity=0.087 Sum_probs=55.9
Q ss_pred HHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCC-----ccHHHHHHH-------------
Q 003940 132 AEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-----PDVDKVYMT------------- 193 (784)
Q Consensus 132 ~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~-----pdi~~~y~~------------- 193 (784)
..+...+|+++|.|+++||+.|+.+... + .++.+.+.+.+..|.|+.+.. ++..+.|.+
T Consensus 23 ~~~~~~gk~~lv~f~~~~C~~C~~~~~~-l--~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 99 (148)
T 2b5x_A 23 REQLIGEKPTLIHFWSISCHLCKEAMPQ-V--NEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSD 99 (148)
T ss_dssp HHHHTTTSCEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSS
T ss_pred chhhcCCCEEEEEEEcCCCHHHHHHhHH-H--HHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCc
Confidence 3444578999999999999999998753 3 246666655467777765431 111111100
Q ss_pred -HHHHhcCCCCCCcEEEECCCCceecc
Q 003940 194 -YVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 194 -~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
.....+++.++|++++++++|+++..
T Consensus 100 ~~~~~~~~v~~~P~~~lid~~G~i~~~ 126 (148)
T 2b5x_A 100 HALTDAFENEYVPAYYVFDKTGQLRHF 126 (148)
T ss_dssp CHHHHHTCCCCSSEEEEECTTCBEEEE
T ss_pred hhHHHHhCCCCCCEEEEECCCCcEEEE
Confidence 01112388999999999999999875
No 110
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=98.67 E-value=2e-08 Score=91.41 Aligned_cols=82 Identities=18% Similarity=0.256 Sum_probs=55.2
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCC-----CCccHHHHHHH---------------H
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE-----ERPDVDKVYMT---------------Y 194 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~e-----e~pdi~~~y~~---------------~ 194 (784)
.-.||+|+|.|+++||+.|+.+.... .++.+..++++..|.|+.. +.++..+.|.+ .
T Consensus 19 ~~~gk~~lv~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 95 (138)
T 4evm_A 19 DYKGKKVYLKFWASWCSICLASLPDT---DEIAKEAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGK 95 (138)
T ss_dssp GGTTSEEEEEECCTTCHHHHHHHHHH---HHHHHTCTTTEEEEEEECTTSTTCCCHHHHHHHHTTCCCTTCCEEECTTCH
T ss_pred HhCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhCCCcEEEEEEcCCCCchhhHHHHHHHHhhcCCCCeeEEECcchH
Confidence 34689999999999999999987633 4555555567888888431 11111111110 0
Q ss_pred HHHhcCCCCCCcEEEECCCCceecc
Q 003940 195 VQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+...+|+.++|++++++++|+++..
T Consensus 96 ~~~~~~v~~~P~~~lid~~G~i~~~ 120 (138)
T 4evm_A 96 LLETYGVRSYPTQAFIDKEGKLVKT 120 (138)
T ss_dssp HHHHTTCCSSSEEEEECTTCCEEEE
T ss_pred HHHHcCcccCCeEEEECCCCcEEEe
Confidence 1122388999999999999999865
No 111
>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A
Probab=98.67 E-value=2.6e-08 Score=95.67 Aligned_cols=96 Identities=9% Similarity=0.126 Sum_probs=61.4
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHH---------------HHHhcC
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQALYG 200 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~---------------~q~~~g 200 (784)
..+|+|+|.|+++||+.|+.+.. .+.++.++++..|.|+.++.++..+.|.+. +...+|
T Consensus 49 ~~gk~vll~F~a~~C~~C~~~~~------~l~~l~~~~v~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 122 (168)
T 2b1k_A 49 TQGKPVLLNVWATWCPTCRAEHQ------YLNQLSAQGIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLG 122 (168)
T ss_dssp CCSSCEEEEEECTTCHHHHHHHH------HHHHHHHTTCCEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTCHHHHHHT
T ss_pred cCCCEEEEEEECCCCHHHHHHHH------HHHHHHHCCCEEEEEECCCChHHHHHHHHHcCCCCceeeECcchHHHHHcC
Confidence 46899999999999999998864 455555556666666654433322222110 111138
Q ss_pred CCCCCcEEEECCCCceeccc-cccCCCCCCCcchHHHHHHHHHH
Q 003940 201 GGGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVKD 243 (784)
Q Consensus 201 ~~G~P~~vfl~pdg~pi~~~-tY~p~~~~~~~~~f~~~L~~i~~ 243 (784)
+.++|++++++++|+++... ++.++ ..+.+.|+++.+
T Consensus 123 v~~~P~~~lid~~G~i~~~~~g~~~~------~~l~~~l~~~l~ 160 (168)
T 2b1k_A 123 VYGAPETFLIDGNGIIRYRHAGDLNP------RVWEEEIKPLWE 160 (168)
T ss_dssp CCSSSEEEEECTTSBEEEEEESCCCH------HHHHHTTHHHHH
T ss_pred ccccCEEEEECCCCeEEEEEeCCCCH------HHHHHHHHHHHH
Confidence 88999999999999998652 33332 245555555443
No 112
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=98.67 E-value=1.8e-08 Score=93.72 Aligned_cols=84 Identities=13% Similarity=0.151 Sum_probs=63.7
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHH--------------HH--Hh
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY--------------VQ--AL 198 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~--------------~q--~~ 198 (784)
-.||+|+|.|+++||+.|+.+....-+.+++.+.+.+ ++..|.|+.++.++..+.|.+. .. ..
T Consensus 25 ~~gk~vll~F~a~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 104 (142)
T 3ewl_A 25 LKAQYTMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRTRQL 104 (142)
T ss_dssp CCCSEEEEEECCSSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHHTTC
T ss_pred cCCCEEEEEEECCCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhhHHH
Confidence 3689999999999999999987766667778887764 5888888877665543333221 11 13
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003940 199 YGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 199 ~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+++.++|+++++|++|+++++
T Consensus 105 ~~v~~~P~~~lid~~G~i~~~ 125 (142)
T 3ewl_A 105 YDIRATPTIYLLDGRKRVILK 125 (142)
T ss_dssp SCCCSSSEEEEECTTCBEEEC
T ss_pred cCCCCCCeEEEECCCCCEEec
Confidence 588999999999999999875
No 113
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=98.65 E-value=4.7e-08 Score=92.91 Aligned_cols=82 Identities=17% Similarity=0.109 Sum_probs=59.7
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHH--------------HHhc
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYV--------------QALY 199 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~--------------q~~~ 199 (784)
.-.||||+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.++.++..+.|.+.. +.+.
T Consensus 31 ~~~gk~vlv~f~~~~C~~C~~~~~~l---~~l~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (165)
T 3or5_A 31 SLKGKAYIVNFFATWCPPCRSEIPDM---VQVQKTWASRGFTFVGIAVNEQLPNVKNYMKTQGIIYPVMMATPELIRAFN 107 (165)
T ss_dssp GGTTCEEEEEEECTTSHHHHHHHHHH---HHHHHHHTTTTEEEEEEECSCCHHHHHHHHHHHTCCSCEEECCHHHHHHHH
T ss_pred HcCCCEEEEEEEcCcCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCCceEecCHHHHHHHh
Confidence 34689999999999999999987632 345555554 48888888887666555553221 1111
Q ss_pred -----CCCCCCcEEEECCCCceecc
Q 003940 200 -----GGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 200 -----g~~G~P~~vfl~pdg~pi~~ 219 (784)
++.++|++++++++|+++..
T Consensus 108 ~~~~~~i~~~P~~~lid~~G~i~~~ 132 (165)
T 3or5_A 108 GYIDGGITGIPTSFVIDASGNVSGV 132 (165)
T ss_dssp TTSTTCSCSSSEEEEECTTSBEEEE
T ss_pred hhhccCCCCCCeEEEECCCCcEEEE
Confidence 67899999999999999865
No 114
>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1
Probab=98.65 E-value=2.3e-08 Score=84.61 Aligned_cols=64 Identities=19% Similarity=0.138 Sum_probs=53.1
Q ss_pred CcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003940 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (784)
Q Consensus 139 KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~p 216 (784)
++++|.|+++||++|+.+.. .+ .++++.+..++..++||.++.+++.+.| |+.|+|+++| +|++
T Consensus 3 ~~~vv~f~~~~C~~C~~~~~-~l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~---~G~~ 66 (85)
T 1fo5_A 3 KVKIELFTSPMCPHCPAAKR-VV--EEVANEMPDAVEVEYINVMENPQKAMEY--------GIMAVPTIVI---NGDV 66 (85)
T ss_dssp CEEEEEEECCCSSCCCTHHH-HH--HHHHHHCSSSEEEEEEESSSSCCTTTST--------TTCCSSEEEE---TTEE
T ss_pred ceEEEEEeCCCCCchHHHHH-HH--HHHHHHcCCceEEEEEECCCCHHHHHHC--------CCcccCEEEE---CCEE
Confidence 57899999999999999976 33 3566666557999999999988877665 8899999998 8887
No 115
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=98.65 E-value=2.6e-08 Score=100.99 Aligned_cols=79 Identities=18% Similarity=0.304 Sum_probs=64.5
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcc---cEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~---FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~ 204 (784)
.+.++.+.+++|+|+|.|+++||+.|+.|... | .++++.+... ++.++||.++.+++.+.| ++.|+
T Consensus 22 ~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~--------~v~~~ 90 (241)
T 3idv_A 22 DANFDNFVADKDTVLLEFYAPWCGHCKQFAPE-Y--EKIANILKDKDPPIPVAKIDATSASVLASRF--------DVSGY 90 (241)
T ss_dssp TTTHHHHHTTCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHHTSSSCCCEEEEETTTCHHHHHHT--------TCCSS
T ss_pred ccCHHHHHhcCCeEEEEEECCCCHHHHHhhHH-H--HHHHHHHhhcCCceEEEEEeccCCHHHHHhc--------CCCcC
Confidence 56677777889999999999999999999863 3 3666666544 999999999988877666 89999
Q ss_pred CcEEEECCCCceec
Q 003940 205 PLSVFLSPDLKPLM 218 (784)
Q Consensus 205 P~~vfl~pdg~pi~ 218 (784)
|+++|+. +|+++.
T Consensus 91 Pt~~~~~-~g~~~~ 103 (241)
T 3idv_A 91 PTIKILK-KGQAVD 103 (241)
T ss_dssp SEEEEEE-TTEEEE
T ss_pred CEEEEEc-CCCccc
Confidence 9999995 677663
No 116
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=98.65 E-value=1.6e-08 Score=94.60 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=56.0
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHH--HHHHHHHHHhcCCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVD--KVYMTYVQALYGGGGW 204 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~--~~y~~~~q~~~g~~G~ 204 (784)
.+.++...++ ||+|.|+++||+.|+.|.. .+.++.++ .+..++||.++.++.. .......+. +++.|+
T Consensus 23 ~~~~~~~~~~--~vlv~F~a~wC~~C~~~~p------~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~-~~v~~~ 93 (135)
T 3emx_A 23 PEEFRQLLQG--DAILAVYSKTCPHCHRDWP------QLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNK-AGVEGT 93 (135)
T ss_dssp HHHHHHHHTS--SEEEEEEETTCHHHHHHHH------HHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHH-HTCCSS
T ss_pred HHHHHHHhCC--cEEEEEECCcCHhhhHhCh------hHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHH-cCCcee
Confidence 4556655554 9999999999999999974 44444433 2677888884332211 111112222 389999
Q ss_pred CcEEEECCCCceeccc-cccC
Q 003940 205 PLSVFLSPDLKPLMGG-TYFP 224 (784)
Q Consensus 205 P~~vfl~pdg~pi~~~-tY~p 224 (784)
|+++|+. +|+++... ++.+
T Consensus 94 Pt~~~~~-~G~~v~~~~G~~~ 113 (135)
T 3emx_A 94 PTLVFYK-EGRIVDKLVGATP 113 (135)
T ss_dssp SEEEEEE-TTEEEEEEESCCC
T ss_pred CeEEEEc-CCEEEEEEeCCCC
Confidence 9988888 99988653 4444
No 117
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=98.63 E-value=4.2e-08 Score=89.89 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=56.2
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHH--------------HHHhc
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY--------------VQALY 199 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~--------------~q~~~ 199 (784)
+...+||++|.|+++||+.|+.+... ++ ++.+.+. ++..|.|+.++.++..+.|.+. ....+
T Consensus 20 ~~~~~k~~lv~f~~~~C~~C~~~~~~-l~--~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 95 (136)
T 1lu4_A 20 ASLQGKPAVLWFWTPWCPFCNAEAPS-LS--QVAAANP-AVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARY 95 (136)
T ss_dssp GGGTTSCEEEEEECTTCHHHHHHHHH-HH--HHHHHCT-TSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHT
T ss_pred HHhCCCEEEEEEECCcChhHHHHHHH-HH--HHHHHCC-CcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhc
Confidence 44568999999999999999998752 22 4555554 6788888877644332222211 11224
Q ss_pred CCCCCCcEEEECCCCcee
Q 003940 200 GGGGWPLSVFLSPDLKPL 217 (784)
Q Consensus 200 g~~G~P~~vfl~pdg~pi 217 (784)
++.++|++++++++|+++
T Consensus 96 ~i~~~P~~~lid~~G~i~ 113 (136)
T 1lu4_A 96 NVPWQPAFVFYRADGTST 113 (136)
T ss_dssp TCCSSSEEEEECTTSCEE
T ss_pred CCCCCCEEEEECCCCcEE
Confidence 889999999999999987
No 118
>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A
Probab=98.63 E-value=4.8e-08 Score=89.86 Aligned_cols=79 Identities=20% Similarity=0.129 Sum_probs=58.4
Q ss_pred HHHHHHhh--cCCcEEEEEccc-------CChhhhhhhhcccCCHHHHHHHhcccEEEEEcC-------CCCccHHHHHH
Q 003940 129 EAFAEARK--RDVPIFLSIGYS-------TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR-------EERPDVDKVYM 192 (784)
Q Consensus 129 eal~~Ak~--e~KpI~l~~~~~-------wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~-------ee~pdi~~~y~ 192 (784)
+.+..+-+ .+|||+|.|+++ ||+.|+.|+... .++++.+.+++..++||. ++.+++.+.|
T Consensus 13 ~~~~~~~~~~~~~~v~v~F~a~~~~~~~~wC~~C~~~~p~l---~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~~~~~~- 88 (123)
T 1wou_A 13 EEFHRAVEQHNGKTIFAYFTGSKDAGGKSWCPDCVQAEPVV---REGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNL- 88 (123)
T ss_dssp HHHHHHHHTTTTSEEEEEEECCBCTTCCBSCHHHHHHHHHH---HHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHH-
T ss_pred HHHHHHHHHhCCCEEEEEEEccCCCCCCCcCHHHHHhhHHH---HHHHHHcCCCcEEEEEECCCchhhhchhHHHHHHC-
Confidence 44444433 499999999999 999999998632 244444545799999999 6667766655
Q ss_pred HHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 193 TYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 193 ~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
++.|+|+++|+++ |+.+.+
T Consensus 89 -------~i~~~Pt~~~~~~-~~~~~g 107 (123)
T 1wou_A 89 -------KVTAVPTLLKYGT-PQKLVE 107 (123)
T ss_dssp -------CCCSSSEEEETTS-SCEEEG
T ss_pred -------CCCeeCEEEEEcC-CceEec
Confidence 8999999999987 554443
No 119
>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1
Probab=98.62 E-value=3.3e-08 Score=83.63 Aligned_cols=63 Identities=16% Similarity=0.100 Sum_probs=52.7
Q ss_pred cEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003940 140 PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (784)
Q Consensus 140 pI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~p 216 (784)
..+|.|+++||++|+.+.. .+ .++++.+..++..++||.++.+++.+.| |+.|+|+++| +|++
T Consensus 3 ~~vv~f~~~~C~~C~~~~~-~l--~~~~~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt~~~---~G~~ 65 (85)
T 1nho_A 3 VNIEVFTSPTCPYCPMAIE-VV--DEAKKEFGDKIDVEKIDIMVDREKAIEY--------GLMAVPAIAI---NGVV 65 (85)
T ss_dssp CCEEEESCSSSCCSTTHHH-HH--HHHHHHHCSSCCEEEECTTTCGGGGGGT--------CSSCSSEEEE---TTTE
T ss_pred EEEEEEECCCCcchHHHHH-HH--HHHHHHhcCCeEEEEEECCCCHHHHHhC--------CceeeCEEEE---CCEE
Confidence 4688999999999999986 33 4666677668999999999988877665 8899999998 8887
No 120
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=98.62 E-value=8.8e-08 Score=89.90 Aligned_cols=82 Identities=12% Similarity=0.100 Sum_probs=56.7
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHH---------------HHHHhc
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT---------------YVQALY 199 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~---------------~~q~~~ 199 (784)
-.+||++|.|+++||+.|+.+... + .++.+.+.+ ++..|.|+.+..++..+.|.+ .+...+
T Consensus 28 ~~gk~~lv~f~~~~C~~C~~~~~~-l--~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 104 (152)
T 2lja_A 28 LKGKYIYIDVWATWCGPCRGELPA-L--KELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAY 104 (152)
T ss_dssp TTTSEEEEEECCSSCCGGGGTHHH-H--HHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHT
T ss_pred cCCCEEEEEEECCcCHhHHHHhHH-H--HHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHc
Confidence 458999999999999999987653 2 244554543 577777877765432222211 111234
Q ss_pred CCCCCCcEEEECCCCceeccc
Q 003940 200 GGGGWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 200 g~~G~P~~vfl~pdg~pi~~~ 220 (784)
++.++|+++|++++|+++...
T Consensus 105 ~v~~~P~~~lid~~G~i~~~~ 125 (152)
T 2lja_A 105 LINGIPRFILLDRDGKIISAN 125 (152)
T ss_dssp TCCSSCCEEEECTTSCEEESS
T ss_pred CcCCCCEEEEECCCCeEEEcc
Confidence 889999999999999998763
No 121
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}
Probab=98.62 E-value=4.6e-08 Score=92.36 Aligned_cols=82 Identities=11% Similarity=0.115 Sum_probs=55.8
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHH-hcccEEEEEcCCCCccHHHHHHH-----------------HH
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL-NDWFVSIKVDREERPDVDKVYMT-----------------YV 195 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~l-n~~FV~VkvD~ee~pdi~~~y~~-----------------~~ 195 (784)
+.-.||+|+|.|+++||+.|+.+..+ + .++.+.+ ++++..|.|+.+..+.+. .|.+ .+
T Consensus 20 ~~~~gk~vlv~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~v~vv~v~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 95 (151)
T 3raz_A 20 QSLKAPVRIVNLWATWCGPCRKEMPA-M--SKWYKAQKKGSVDMVGIALDTSDNIG-NFLKQTPVSYPIWRYTGANSRNF 95 (151)
T ss_dssp GGCCSSEEEEEEECTTCHHHHHHHHH-H--HHHHHTSCTTTEEEEEEESSCHHHHH-HHHHHSCCSSCEEEECCSCHHHH
T ss_pred HHhCCCEEEEEEEcCcCHHHHHHHHH-H--HHHHHHhccCCeEEEEEECCChHHHH-HHHHHcCCCCceEecCccchHHH
Confidence 34479999999999999999998752 2 2344444 346788888876433332 2211 01
Q ss_pred HHhcC--CCCCCcEEEECCCCceecc
Q 003940 196 QALYG--GGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 196 q~~~g--~~G~P~~vfl~pdg~pi~~ 219 (784)
...+| +.++|++++++++|+++..
T Consensus 96 ~~~~~~~v~~~P~~~lid~~G~i~~~ 121 (151)
T 3raz_A 96 MKTYGNTVGVLPFTVVEAPKCGYRQT 121 (151)
T ss_dssp HHTTTCCSCCSSEEEEEETTTTEEEE
T ss_pred HHHhCCccCCCCEEEEECCCCcEEEE
Confidence 12236 7899999999999998765
No 122
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=98.59 E-value=6.4e-08 Score=97.55 Aligned_cols=81 Identities=17% Similarity=0.122 Sum_probs=66.1
Q ss_pred hHHHHHHHhhcCCcE-EEEEcccCChhhhhhhhcccCCHHHHHHHh----cccEEEEEcCCCCccHHHHHHHHHHHhcCC
Q 003940 127 GEEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLN----DWFVSIKVDREERPDVDKVYMTYVQALYGG 201 (784)
Q Consensus 127 ~~eal~~Ak~e~KpI-~l~~~~~wC~wC~~Me~etf~d~eVa~~ln----~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~ 201 (784)
.++.++..++.++++ +|.|+++||++|+.|... + .++++.+. .++..++||.++.+++.+.| ++
T Consensus 122 ~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~p~-~--~~l~~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v 190 (226)
T 1a8l_A 122 MDETKQAIRNIDQDVRILVFVTPTCPYCPLAVRM-A--HKFAIENTKAGKGKILGDMVEAIEYPEWADQY--------NV 190 (226)
T ss_dssp CHHHHHHHTTCCSCEEEEEEECSSCTTHHHHHHH-H--HHHHHHHHHTTCCCEEEEEEEGGGCHHHHHHT--------TC
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCCccHHHHHH-H--HHHHHhcccccCCcEEEEEEEcccCHHHHHhC--------CC
Confidence 467788888888998 999999999999999763 3 46777665 47999999999888877666 89
Q ss_pred CCCCcEEEECCCCceecc
Q 003940 202 GGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 202 ~G~P~~vfl~pdg~pi~~ 219 (784)
.|+|+++|+ ++|+.+..
T Consensus 191 ~~~Pt~~~~-~~G~~~~~ 207 (226)
T 1a8l_A 191 MAVPKIVIQ-VNGEDRVE 207 (226)
T ss_dssp CSSCEEEEE-ETTEEEEE
T ss_pred cccCeEEEE-eCCceeEE
Confidence 999998877 58887643
No 123
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A
Probab=98.58 E-value=1.2e-07 Score=89.11 Aligned_cols=82 Identities=16% Similarity=0.129 Sum_probs=56.5
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHH--------------HHHHhc
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT--------------YVQALY 199 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~--------------~~q~~~ 199 (784)
.-.+|+|+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.++.++..+.|.+ .+...+
T Consensus 23 ~~~gk~vlv~F~~~~C~~C~~~~~~l---~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 99 (151)
T 2f9s_A 23 DLKGKGVFLNFWGTWCEPCKKEFPYM---ANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAY 99 (151)
T ss_dssp GGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHT
T ss_pred HcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhc
Confidence 34689999999999999999987632 245555543 577777776654432222221 111224
Q ss_pred CCCCCCcEEEECCCCceecc
Q 003940 200 GGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 200 g~~G~P~~vfl~pdg~pi~~ 219 (784)
++.++|++++++++|+++..
T Consensus 100 ~v~~~P~~~lid~~G~i~~~ 119 (151)
T 2f9s_A 100 DVSPLPTTFLINPEGKVVKV 119 (151)
T ss_dssp TCCSSCEEEEECTTSEEEEE
T ss_pred CCCCCCeEEEECCCCcEEEE
Confidence 88999999999999999875
No 124
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=98.58 E-value=4.4e-08 Score=90.57 Aligned_cols=80 Identities=14% Similarity=0.035 Sum_probs=53.3
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCC---CccHHHHHHH--------------HHHHh
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE---RPDVDKVYMT--------------YVQAL 198 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee---~pdi~~~y~~--------------~~q~~ 198 (784)
.+|||+|.|+++||+.|+.+.... .++.+.+. +++..|.|+.+. .++..+.|.+ .+...
T Consensus 33 ~gk~~ll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (145)
T 3erw_A 33 KGQKTILHFWTSWCPPCKKELPQF---QSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKANKLTFPIVLDSKGELMKE 109 (145)
T ss_dssp TTSEEEEEEECSSCHHHHHHHHHH---HHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHTTCCSCEEECSSSHHHHH
T ss_pred CCCEEEEEEECCCCHHHHHHHHHH---HHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHcCCceeEEEcCchhHHHh
Confidence 789999999999999999987532 24555554 355566665542 2222222211 11122
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003940 199 YGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 199 ~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+++.++|++++++++|+++..
T Consensus 110 ~~v~~~P~~~lid~~G~i~~~ 130 (145)
T 3erw_A 110 YHIITIPTSFLLNEKGEIEKT 130 (145)
T ss_dssp TTCCEESEEEEECTTCCEEEE
T ss_pred cCcCccCeEEEEcCCCcEEEE
Confidence 488999999999999999865
No 125
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=98.58 E-value=9.5e-08 Score=87.12 Aligned_cols=80 Identities=16% Similarity=0.072 Sum_probs=54.5
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHH---------------HHHh
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQAL 198 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~---------------~q~~ 198 (784)
+...+|+++|.|+++||+.|+.+... + .++.+.+. ++..|.|+.++.++..+.|.+. ....
T Consensus 21 ~~~~~k~~ll~f~~~~C~~C~~~~~~-l--~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 96 (136)
T 1zzo_A 21 ESLLGKPAVLWFWAPWCPTCQGEAPV-V--GQVAASHP-EVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWAN 96 (136)
T ss_dssp GGGTTSCEEEEEECTTCHHHHHHHHH-H--HHHHHHCT-TSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHH
T ss_pred HHhCCCeEEEEEEcCCChhHHHHHHH-H--HHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHH
Confidence 34468999999999999999998652 2 24555554 6777777776533222222110 1112
Q ss_pred cCCCCCCcEEEECCCCcee
Q 003940 199 YGGGGWPLSVFLSPDLKPL 217 (784)
Q Consensus 199 ~g~~G~P~~vfl~pdg~pi 217 (784)
+|+.++|++++++++|+++
T Consensus 97 ~~i~~~P~~~~id~~g~i~ 115 (136)
T 1zzo_A 97 FGVTQQPAYAFVDPHGNVD 115 (136)
T ss_dssp TTCCSSSEEEEECTTCCEE
T ss_pred cCCCCCceEEEECCCCCEE
Confidence 3889999999999999987
No 126
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}
Probab=98.57 E-value=1.5e-07 Score=88.40 Aligned_cols=88 Identities=18% Similarity=0.263 Sum_probs=60.3
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHH--------------HHHHh
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT--------------YVQAL 198 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~--------------~~q~~ 198 (784)
+...||+|+|.|+++||+.|+.+... + .++.+.+.+ ++..|.|+.+..++..+.|.+ .+...
T Consensus 24 ~~~~gk~vll~f~~~~C~~C~~~~~~-l--~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 100 (152)
T 3gl3_A 24 SDKTGSVVYLDFWASWCGPCRQSFPW-M--NQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRL 100 (152)
T ss_dssp GGGTTSEEEEEEECTTCTHHHHHHHH-H--HHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHH
T ss_pred HHhCCCEEEEEEECCcCHHHHHHHHH-H--HHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHH
Confidence 44568999999999999999988763 3 345555554 377777777655433322221 11222
Q ss_pred cCCCCCCcEEEECCCCceeccc-cccC
Q 003940 199 YGGGGWPLSVFLSPDLKPLMGG-TYFP 224 (784)
Q Consensus 199 ~g~~G~P~~vfl~pdg~pi~~~-tY~p 224 (784)
+++.++|++++++++|+++... ++.+
T Consensus 101 ~~v~~~P~~~lid~~G~i~~~~~g~~~ 127 (152)
T 3gl3_A 101 YGVKGMPTSFLIDRNGKVLLQHVGFRP 127 (152)
T ss_dssp TTCCSSSEEEEECTTSBEEEEEESCCT
T ss_pred cCCCCCCeEEEECCCCCEEEEEccCCC
Confidence 4889999999999999998763 4444
No 127
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=98.57 E-value=2.5e-07 Score=87.32 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=55.9
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHH-----------------HHHHHh
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYM-----------------TYVQAL 198 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~-----------------~~~q~~ 198 (784)
.||+|+|.|+++||+.|+.+... + .++.+.+.+ ++..|.|+.++.++..+.|. ..+...
T Consensus 28 ~gk~vll~F~a~~C~~C~~~~~~-l--~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 104 (152)
T 2lrn_A 28 KGKYVLVDFWFAGCSWCRKETPY-L--LKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLES 104 (152)
T ss_dssp TTSEEEEEEECTTCTTHHHHHHH-H--HHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHH
T ss_pred CCCEEEEEEECCCChhHHHHHHH-H--HHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHH
Confidence 68999999999999999987653 2 245555544 47777777765433222221 111223
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003940 199 YGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 199 ~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+|+.++|+++++|++|+++..
T Consensus 105 ~~v~~~P~~~lid~~G~i~~~ 125 (152)
T 2lrn_A 105 YCIVGFPHIILVDPEGKIVAK 125 (152)
T ss_dssp TTCCSSCEEEEECTTSEEEEE
T ss_pred hCCCcCCeEEEECCCCeEEEe
Confidence 488999999999999999876
No 128
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}
Probab=98.56 E-value=1.5e-07 Score=89.70 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=59.6
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCC-------------------CccHHHHHHH
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREE-------------------RPDVDKVYMT 193 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee-------------------~pdi~~~y~~ 193 (784)
+.-+||+|+|.|+++||+.|+.+.... .++.+.+. ++++.|.|+.++ ...+.+.|
T Consensus 37 ~~~~gk~vll~F~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~-- 111 (158)
T 3hdc_A 37 AQYRGKIVLVNFWASWCPYCRDEMPSM---DRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRY-- 111 (158)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHT--
T ss_pred HHhCCCEEEEEEECCcCHHHHHHHHHH---HHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHh--
Confidence 334689999999999999999876532 34555554 467777777765 33444333
Q ss_pred HHHHhcCCCCCCcEEEECCCCceeccc-cccCCC
Q 003940 194 YVQALYGGGGWPLSVFLSPDLKPLMGG-TYFPPE 226 (784)
Q Consensus 194 ~~q~~~g~~G~P~~vfl~pdg~pi~~~-tY~p~~ 226 (784)
++.++|++++++++|+++... ++.+.+
T Consensus 112 ------~v~~~P~~~lid~~G~i~~~~~G~~~~~ 139 (158)
T 3hdc_A 112 ------GANRLPDTFIVDRKGIIRQRVTGGIEWD 139 (158)
T ss_dssp ------TCCSSSEEEEECTTSBEEEEEESCCCTT
T ss_pred ------CCCCcceEEEEcCCCCEEEEEeCCCccc
Confidence 889999999999999998763 455544
No 129
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=98.55 E-value=1.7e-07 Score=88.17 Aligned_cols=102 Identities=14% Similarity=0.100 Sum_probs=64.7
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCC-ccHHHHHHHH--------------HHH
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER-PDVDKVYMTY--------------VQA 197 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~-pdi~~~y~~~--------------~q~ 197 (784)
+.-.||+|+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.+.. ++..+.|.+. +..
T Consensus 24 ~~~~gk~vll~f~~~~C~~C~~~~~~l---~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 100 (154)
T 3kcm_A 24 SDLKGQVVIVNFWATWCPPCREEIPSM---MRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGK 100 (154)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHH
T ss_pred hhcCCCEEEEEEECCCCHHHHHHHHHH---HHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHH
Confidence 334789999999999999999987632 345555554 566666666654 3222222111 112
Q ss_pred hcCCCCCCcEEEECCCCceeccc-cccCCCCCCCcchHHHHHHHHH
Q 003940 198 LYGGGGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 198 ~~g~~G~P~~vfl~pdg~pi~~~-tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
.+++.++|++++++++|+++... ++.+. ..+.+.+.|+++.
T Consensus 101 ~~~v~~~P~~~lid~~G~i~~~~~g~~~~----~~~~l~~~l~~l~ 142 (154)
T 3kcm_A 101 LYGTTGVPETFVIDRHGVILKKVVGAMEW----DHPEVIAFLNNEL 142 (154)
T ss_dssp HHTCCSBCEEEEECTTSBEEEEEESCCCT----TSHHHHHHHHTC-
T ss_pred HhCCCCCCeEEEECCCCcEEEEEcCCCcc----ccHHHHHHHHHHH
Confidence 24889999999999999998752 33322 2345666666554
No 130
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=98.54 E-value=1.5e-07 Score=92.05 Aligned_cols=99 Identities=12% Similarity=0.118 Sum_probs=65.5
Q ss_pred HHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHH---------------HHH
Q 003940 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQA 197 (784)
Q Consensus 133 ~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~---------------~q~ 197 (784)
.+.-.||+|+|.|+++||+.|+.+. |.+.++.++++..|.|+.++.++..+.|.+. +..
T Consensus 53 l~~~~gk~vll~F~a~~C~~C~~~~------~~l~~l~~~~v~vv~vs~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 126 (176)
T 3kh7_A 53 EADLKGKPALVNVWGTWCPSCRVEH------PELTRLAEQGVVIYGINYKDDNAAAIKWLNELHNPYLLSISDADGTLGL 126 (176)
T ss_dssp GGGGCSSCEEEEEECTTCHHHHHHH------HHHHHHHHTTCEEEEEEESCCHHHHHHHHHHTTCCCSEEEEETTCHHHH
T ss_pred HHHhCCCEEEEEEECCcCHHHHHHH------HHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHcCCCCceEEECCcchHHH
Confidence 3445689999999999999999875 4666666667777777765544433333221 111
Q ss_pred hcCCCCCCcEEEECCCCceeccc-cccCCCCCCCcchHHHHHHHHHH
Q 003940 198 LYGGGGWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVKD 243 (784)
Q Consensus 198 ~~g~~G~P~~vfl~pdg~pi~~~-tY~p~~~~~~~~~f~~~L~~i~~ 243 (784)
.+|+.++|+++++|++|++++.. ++.+++ .+.+.|+++.+
T Consensus 127 ~~~v~~~P~~~lid~~G~i~~~~~g~~~~~------~l~~~l~~~l~ 167 (176)
T 3kh7_A 127 DLGVYGAPETYLIDKQGIIRHKIVGVVDQK------VWREQLAPLYQ 167 (176)
T ss_dssp HHTCCSSCEEEEECTTCBEEEEEESCCCHH------HHHHHTHHHHH
T ss_pred HcCCCCCCeEEEECCCCeEEEEEcCCCCHH------HHHHHHHHHHH
Confidence 23788999999999999998753 333322 45555554443
No 131
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=98.52 E-value=1.4e-07 Score=87.68 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=56.2
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHH-hc-ccEEEEEcCCCCccHHHHHHH-----------------HHHH
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL-ND-WFVSIKVDREERPDVDKVYMT-----------------YVQA 197 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~l-n~-~FV~VkvD~ee~pdi~~~y~~-----------------~~q~ 197 (784)
.||+|+|.|+++||+.|+.+... + .++.+.+ .+ ++..|.|+.+..++..+.|.+ .+..
T Consensus 32 ~gk~vll~F~~~~C~~C~~~~~~-l--~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 108 (148)
T 3fkf_A 32 RNRYLLLNFWASWCDPQPEANAE-L--KRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAK 108 (148)
T ss_dssp TTSEEEEEEECGGGCCCHHHHHH-H--HHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred CCcEEEEEEECCCCHHHHHHhHH-H--HHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHH
Confidence 68999999999999999998753 2 3455555 33 377777777654422222210 1112
Q ss_pred hcCCCCCCcEEEECCCCceeccc
Q 003940 198 LYGGGGWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 198 ~~g~~G~P~~vfl~pdg~pi~~~ 220 (784)
.+|+.++|++++++++|+++...
T Consensus 109 ~~~v~~~P~~~lid~~G~i~~~~ 131 (148)
T 3fkf_A 109 QYAILTLPTNILLSPTGKILARD 131 (148)
T ss_dssp HTTCCSSSEEEEECTTSBEEEES
T ss_pred hcCCCCcCEEEEECCCCeEEEec
Confidence 34889999999999999998763
No 132
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Probab=98.52 E-value=2.9e-08 Score=94.41 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=48.2
Q ss_pred HHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc------ccEEEEEc--------------------------
Q 003940 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND------WFVSIKVD-------------------------- 180 (784)
Q Consensus 133 ~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~------~FV~VkvD-------------------------- 180 (784)
.+...+|+|+|.|+++||+.|+.+.. .+.++.++ .||.|.+|
T Consensus 33 ~~~~~gk~vlv~F~a~~C~~C~~~~~------~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (164)
T 2h30_A 33 VYLKKDKPTLIKFWASWCPLCLSELG------QAEKWAQDAKFSSANLITVASPGFLHEKKDGEFQKWYAGLNYPKLPVV 106 (164)
T ss_dssp GGCCTTSCEEEEECCTTCHHHHHHHH------HHHHHHTCGGGTTSEEEEEECTTSTTCCCTTHHHHHHTTSCCTTSCEE
T ss_pred HHHhCCCEEEEEEECCCCHHHHHHHH------HHHHHHHHcccCCcEEEEEEcCCCccccCHHHHHHHHHhCCCCcceEE
Confidence 44567899999999999999998764 22222221 23333322
Q ss_pred CCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 181 REERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 181 ~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
.++..++.+. +++.++|+++|++++|+++..
T Consensus 107 ~d~~~~~~~~--------~~v~~~P~~~lid~~G~i~~~ 137 (164)
T 2h30_A 107 TDNGGTIAQN--------LNISVYPSWALIGKDGDVQRI 137 (164)
T ss_dssp ECTTCHHHHH--------TTCCSSSEEEEECTTSCEEEE
T ss_pred EcCchHHHHH--------cCCCccceEEEECCCCcEEEE
Confidence 2222333333 388999999999999998865
No 133
>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}
Probab=98.51 E-value=4.6e-08 Score=88.69 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=52.7
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCC----CCccHHHHHHHHHHHhcCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE----ERPDVDKVYMTYVQALYGGGG 203 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~e----e~pdi~~~y~~~~q~~~g~~G 203 (784)
+++++.|+..+|+++|.|+++||+.|+.|.. .|+ +++ +.|-.|.+|.+ +.+++.+.| |+.|
T Consensus 2 ~~~~~la~~~~k~~vV~F~A~WC~~C~~~~p-~~~--~~a----~~~~~v~~~~~~~~~~~~~l~~~~--------~V~~ 66 (106)
T 3kp8_A 2 PLAVGLAAHLRQIGGTMYGAYWCPHCQDQKE-LFG--AAF----DQVPYVECSPNGPGTPQAQECTEA--------GITS 66 (106)
T ss_dssp HHHHHHHHHHHHHTCEEEECTTCHHHHHHHH-HHG--GGG----GGSCEEESCTTCTTSCCCHHHHHT--------TCCS
T ss_pred hHhhHHHHhcCCCEEEEEECCCCHHHHHHHH-HHH--HHH----HhCCEEEEecccccchhHHHHHHc--------CCeE
Confidence 5678888888999999999999999999974 343 222 23334444433 567776655 8999
Q ss_pred CCcEEEECCCCceec
Q 003940 204 WPLSVFLSPDLKPLM 218 (784)
Q Consensus 204 ~P~~vfl~pdg~pi~ 218 (784)
+||++| +|+++.
T Consensus 67 ~PT~~i---~G~~~~ 78 (106)
T 3kp8_A 67 YPTWII---NGRTYT 78 (106)
T ss_dssp SSEEEE---TTEEEE
T ss_pred eCEEEE---CCEEec
Confidence 999777 787643
No 134
>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.50 E-value=3.5e-07 Score=86.00 Aligned_cols=81 Identities=15% Similarity=0.176 Sum_probs=54.5
Q ss_pred HHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHH---------------HH
Q 003940 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY---------------VQ 196 (784)
Q Consensus 133 ~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~---------------~q 196 (784)
.+.-.+||++|.|+++||++|+.+.. .+.++.++ ++..|.|+.++.++..+.|.+. +.
T Consensus 37 l~~~~gk~~ll~f~~~~C~~C~~~~~------~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 110 (156)
T 1kng_A 37 PAAFKGKVSLVNVWASWCVPCHDEAP------LLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRAS 110 (156)
T ss_dssp GGGGTTSCEEEEEECTTCHHHHHHHH------HHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHH
T ss_pred hHHhCCCEEEEEEEcccCHhHHHHHH------HHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHH
Confidence 33445899999999999999998764 44444433 4677777765544332222211 11
Q ss_pred HhcCCCCCCcEEEECCCCceecc
Q 003940 197 ALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 197 ~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
..+++.++|++++++++|+++..
T Consensus 111 ~~~~v~~~P~~~~id~~G~i~~~ 133 (156)
T 1kng_A 111 IEWGVYGVPETFVVGREGTIVYK 133 (156)
T ss_dssp HHTTCCSSCEEEEECTTSBEEEE
T ss_pred HhcCcCccCeEEEEcCCCCEEEE
Confidence 12488899999999999999865
No 135
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=98.48 E-value=2.8e-07 Score=87.14 Aligned_cols=83 Identities=16% Similarity=0.082 Sum_probs=53.0
Q ss_pred HhhcCCcEEEEEcccCChhhhhh-hhcccCCHHHHHHHh-cccEEEEEcCC------CCccHHHHHHHH-----------
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVM-EVESFEDEGVAKLLN-DWFVSIKVDRE------ERPDVDKVYMTY----------- 194 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~M-e~etf~d~eVa~~ln-~~FV~VkvD~e------e~pdi~~~y~~~----------- 194 (784)
+.-.||+|+|.|+++||+.|+.+ .. .++ ++.+.+. +++..|.|+.+ +.++..+.|.+.
T Consensus 24 ~~~~gk~vlv~f~a~wC~~C~~~~~~-~l~--~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 100 (158)
T 3eyt_A 24 ADLRGKVIVIEAFQMLCPGCVMHGIP-LAQ--KVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEYRIKFPVGVDQ 100 (158)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHTHHH-HHH--HHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEEC
T ss_pred HHhCCCEEEEEEECCcCcchhhhhhH-HHH--HHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHcCCCceEEEcC
Confidence 34468999999999999999984 32 222 3444444 35666666542 122222222111
Q ss_pred --------HHHhcCCCCCCcEEEECCCCceecc
Q 003940 195 --------VQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 195 --------~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+...+|+.|+|++++++++|+++..
T Consensus 101 ~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 133 (158)
T 3eyt_A 101 PGDGAMPRTMAAYQMRGTPSLLLIDKAGDLRAH 133 (158)
T ss_dssp CCSSSSCHHHHHTTCCSSSEEEEECTTSEEEEE
T ss_pred ccchhhHHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence 1222488999999999999999875
No 136
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=98.47 E-value=1.6e-07 Score=87.59 Aligned_cols=84 Identities=17% Similarity=0.109 Sum_probs=62.0
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHHH----------------HHHhc
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY----------------VQALY 199 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~~----------------~q~~~ 199 (784)
.+|+|+|.|+++||+.|+.+....-++|.+.+.+. +++..|.|+.++.++.-+.|.+. ....+
T Consensus 30 ~gk~vll~F~a~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 109 (142)
T 3eur_A 30 PAEYTLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEELDEWKKHRNDFAKEWTNGYDKELVIKNKNLY 109 (142)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCHHHHHHHGGGSCTTSEEEECTTCHHHHTTCS
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCHHHHHHHHHhcccccccccCccchhhhhhhc
Confidence 47999999999999999998876666677777774 46788888877654432222110 12234
Q ss_pred CCCCCCcEEEECCCCceeccc
Q 003940 200 GGGGWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 200 g~~G~P~~vfl~pdg~pi~~~ 220 (784)
++.++|+++++|++|+++...
T Consensus 110 ~v~~~P~~~lid~~G~i~~~~ 130 (142)
T 3eur_A 110 DLRAIPTLYLLDKNKTVLLKD 130 (142)
T ss_dssp CCTTCSEEEEECTTCBEEEEE
T ss_pred CCCcCCeEEEECCCCcEEecC
Confidence 788999999999999998763
No 137
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}
Probab=98.46 E-value=2.4e-07 Score=89.68 Aligned_cols=84 Identities=17% Similarity=0.138 Sum_probs=56.4
Q ss_pred HHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc--ccEEEEEcCCCCccHHHHHH----------------HH
Q 003940 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYM----------------TY 194 (784)
Q Consensus 133 ~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~--~FV~VkvD~ee~pdi~~~y~----------------~~ 194 (784)
.+.-.||+|+|.|+++||+.|+.+.... .++.+.+.+ ++..|.|+.++.++..+.|. ..
T Consensus 43 l~~~~gk~vll~F~a~wC~~C~~~~p~l---~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (165)
T 3s9f_A 43 MDSLSGKTVFFYFSASWCPPCRGFTPQL---VEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEA 119 (165)
T ss_dssp SGGGTTSEEEEEEECTTCHHHHHHHHHH---HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHH
T ss_pred HHHcCCCEEEEEEECCcChhHHHHHHHH---HHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHH
Confidence 3444689999999999999999987532 355666653 55666665554432111111 11
Q ss_pred HHHhcCCCCCCcEEEECCC-Cceecc
Q 003940 195 VQALYGGGGWPLSVFLSPD-LKPLMG 219 (784)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pd-g~pi~~ 219 (784)
+...+++.++|+++|++++ |+++..
T Consensus 120 l~~~~~v~~~Pt~~lid~~~G~iv~~ 145 (165)
T 3s9f_A 120 LTKKYSVESIPTLIGLNADTGDTVTT 145 (165)
T ss_dssp HHHHTTCCSSSEEEEEETTTCCEEES
T ss_pred HHHHcCCCCCCEEEEEeCCCCEEEec
Confidence 2223488999999999998 999875
No 138
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=98.46 E-value=2.1e-07 Score=88.13 Aligned_cols=84 Identities=12% Similarity=0.124 Sum_probs=53.2
Q ss_pred HHhhcCCcEEEEEcccCChhhhh-hhhcccCCHHHHHHHhc-ccEEEEEcCC------CCccHHHHHHHH----------
Q 003940 133 EARKRDVPIFLSIGYSTCHWCHV-MEVESFEDEGVAKLLND-WFVSIKVDRE------ERPDVDKVYMTY---------- 194 (784)
Q Consensus 133 ~Ak~e~KpI~l~~~~~wC~wC~~-Me~etf~d~eVa~~ln~-~FV~VkvD~e------e~pdi~~~y~~~---------- 194 (784)
.+.-.||||+|.|+++||+.|+. |.. .+ .++.+.+.+ ++..|.|+.+ +.++..+.|.+.
T Consensus 25 l~~~~gk~vlv~F~a~~C~~C~~e~~~-~l--~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 101 (160)
T 3lor_A 25 NEDLRGKVVVVEVFQMLCPGCVNHGVP-QA--QKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEFGIKFPVAVD 101 (160)
T ss_dssp HHHHTTSEEEEEEECTTCHHHHHTHHH-HH--HHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHhCCCEEEEEEEcCCCcchhhhhhH-HH--HHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHcCCCCcEEEC
Confidence 34446999999999999999997 443 12 234444433 3666666542 222222222211
Q ss_pred ----------HHHhcCCCCCCcEEEECCCCceecc
Q 003940 195 ----------VQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 195 ----------~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+...+|+.|+|+++|++++|+++..
T Consensus 102 ~~~~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 136 (160)
T 3lor_A 102 MPREGQRIPSTMKKYRLEGTPSIILADRKGRIRQV 136 (160)
T ss_dssp CCCTTCSSCHHHHHTTCCSSSEEEEECTTSBEEEE
T ss_pred CccccchhhhHHHhcccCccceEEEECCCCcEEEE
Confidence 1122488999999999999999875
No 139
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A
Probab=98.46 E-value=4.6e-07 Score=84.57 Aligned_cols=82 Identities=12% Similarity=0.050 Sum_probs=56.5
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh--cccEEEEEcCCCCccHHHHH-----------------HHH
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY-----------------MTY 194 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln--~~FV~VkvD~ee~pdi~~~y-----------------~~~ 194 (784)
+.-.+|+|+|.|+++||+.|+.+... + .++++.+. +++..|.|+.++.++..+.| ...
T Consensus 24 ~~~~gk~vll~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 100 (144)
T 1i5g_A 24 PSLAGKTVFFYFSASWCPPSRAFTPQ-L--IDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFL 100 (144)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred HHcCCCEEEEEEECCCCHHHHHHHHH-H--HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHH
Confidence 34468999999999999999988753 2 35666665 36666777666433211111 112
Q ss_pred HHHhcCCCCCCcEEEEC-CCCceecc
Q 003940 195 VQALYGGGGWPLSVFLS-PDLKPLMG 219 (784)
Q Consensus 195 ~q~~~g~~G~P~~vfl~-pdg~pi~~ 219 (784)
.+ .+++.++|+++|++ ++|+++..
T Consensus 101 ~~-~~~v~~~P~~~lid~~~G~i~~~ 125 (144)
T 1i5g_A 101 TT-GFDVKSIPTLVGVEADSGNIITT 125 (144)
T ss_dssp HH-HTTCCSSSEEEEEETTTCCEEES
T ss_pred HH-HcCCCCCCEEEEEECCCCcEEec
Confidence 22 24889999999999 89999875
No 140
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.45 E-value=1.7e-07 Score=87.86 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=51.9
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~p 216 (784)
.+|+|+|+|+++||+.|+.|.. .|+ ++++.. .++..++||.++.+. . +++.++|+++|+. +|++
T Consensus 29 ~~~~vvv~f~a~wC~~C~~~~p-~l~--~la~~~-~~v~~~~vd~~~~~~---~--------~~i~~~Pt~~~~~-~G~~ 92 (135)
T 2dbc_A 29 KDLWVVIHLYRSSVPMCLVVNQ-HLS--VLARKF-PETKFVKAIVNSCIE---H--------YHDNCLPTIFVYK-NGQI 92 (135)
T ss_dssp SSCEEEEEECCTTCHHHHHHHH-HHH--HHHHHC-SSEEEEEECCSSSCS---S--------CCSSCCSEEEEES-SSSC
T ss_pred CCCEEEEEEECCCChHHHHHHH-HHH--HHHHHC-CCcEEEEEEhhcCcc---c--------CCCCCCCEEEEEE-CCEE
Confidence 3589999999999999999986 332 344443 357889999987652 2 3889999999997 8988
Q ss_pred ecc
Q 003940 217 LMG 219 (784)
Q Consensus 217 i~~ 219 (784)
+..
T Consensus 93 v~~ 95 (135)
T 2dbc_A 93 EGK 95 (135)
T ss_dssp SEE
T ss_pred EEE
Confidence 764
No 141
>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=2.4e-08 Score=95.03 Aligned_cols=108 Identities=17% Similarity=0.218 Sum_probs=67.1
Q ss_pred HHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHH--hcccEEEEEcCCCCccHHHHHHHHHH----------
Q 003940 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQ---------- 196 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~l--n~~FV~VkvD~ee~pdi~~~y~~~~q---------- 196 (784)
+.+..+.-+||+|+|.|+++||+.|+.+.. .++. ++.+.+ ++++..|.|+.++.++..+.|.+...
T Consensus 24 ~~~~l~~~~gk~vll~f~a~~C~~C~~~~~-~l~~-~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~ 101 (159)
T 2ls5_A 24 KQVTLSSLRGKVVMLQFTASWCGVCRKEMP-FIEK-DIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLDPG 101 (159)
Confidence 445555557899999999999999998765 3443 122222 35677788877765554444432110
Q ss_pred ----HhcC--CCCCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHHH
Q 003940 197 ----ALYG--GGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDA 244 (784)
Q Consensus 197 ----~~~g--~~G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~~ 244 (784)
..++ ..|+|+++|+|++|+++.......+ +.+.++|+++.+.
T Consensus 102 ~~~~~~~~~~~~~~P~~~lid~~G~i~~~~~g~~~------~~l~~~l~~l~~~ 149 (159)
T 2ls5_A 102 ADIFAKYALRDAGITRNVLIDREGKIVKLTRLYNE------EEFASLVQQINEM 149 (159)
Confidence 1112 4679999999999999875321222 2466666655543
No 142
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=98.44 E-value=3.4e-07 Score=94.05 Aligned_cols=70 Identities=14% Similarity=0.161 Sum_probs=56.4
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc---ccEEEEEcC--CCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDR--EERPDVDKVYMTYVQALYGGGGWPLSV 208 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~---~FV~VkvD~--ee~pdi~~~y~~~~q~~~g~~G~P~~v 208 (784)
..+.+|+++|.|+++||+.|+.|.. .| .++++.+.. .+..++||. ++.+++.+.| ++.++|+++
T Consensus 26 i~~~~~~vlv~F~a~wC~~C~~~~p-~~--~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~--------~v~~~Pt~~ 94 (244)
T 3q6o_A 26 VLGSRSAWAVEFFASWCGHCIAFAP-TW--XALAEDVKAWRPALYLAALDCAEETNSAVCRDF--------NIPGFPTVR 94 (244)
T ss_dssp HSSCSSEEEEEEECTTCHHHHHHHH-HH--HHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHT--------TCCSSSEEE
T ss_pred HhhCCCeEEEEEECCcCHHHHHHHH-HH--HHHHHHHHhccCcEEEEEEeCCchhhHHHHHHc--------CCCccCEEE
Confidence 3466799999999999999999986 33 467777765 688889998 5667776665 899999999
Q ss_pred EECCCC
Q 003940 209 FLSPDL 214 (784)
Q Consensus 209 fl~pdg 214 (784)
|+++.+
T Consensus 95 ~~~~g~ 100 (244)
T 3q6o_A 95 FFXAFT 100 (244)
T ss_dssp EECTTC
T ss_pred EEeCCC
Confidence 999743
No 143
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=98.44 E-value=2.5e-07 Score=93.68 Aligned_cols=78 Identities=24% Similarity=0.348 Sum_probs=61.7
Q ss_pred HHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcc---cEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003940 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~---FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P 205 (784)
+.++...+++|+++|.|+++||+.|+.|... | .++++.+... +..++||.++.+++.+.| ++.++|
T Consensus 138 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~-~--~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~P 206 (241)
T 3idv_A 138 ENFDEVVNDADIILVEFYAPWCGHCKKLAPE-Y--EKAAKELSKRSPPIPLAKVDATAETDLAKRF--------DVSGYP 206 (241)
T ss_dssp TTHHHHHHHCSEEEEEEECTTCTGGGGTHHH-H--HHHHHHHHTSSSCCCEEEEETTTCHHHHHHT--------TCCSSS
T ss_pred HHHHHhhccCCeEEEEEECCCCHHHHHhHHH-H--HHHHHHHhccCCcEEEEEEECCCCHHHHHHc--------CCcccC
Confidence 4455566778999999999999999999763 3 3566666543 899999999988887766 899999
Q ss_pred cEEEECCCCceec
Q 003940 206 LSVFLSPDLKPLM 218 (784)
Q Consensus 206 ~~vfl~pdg~pi~ 218 (784)
+++|+. +|+++.
T Consensus 207 t~~~~~-~g~~~~ 218 (241)
T 3idv_A 207 TLKIFR-KGRPYD 218 (241)
T ss_dssp EEEEEE-TTEEEE
T ss_pred EEEEEE-CCeEEE
Confidence 999986 577764
No 144
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}
Probab=98.43 E-value=3.1e-07 Score=87.73 Aligned_cols=84 Identities=11% Similarity=0.104 Sum_probs=56.0
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCC------------------CCccHHHHHHHH--
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE------------------ERPDVDKVYMTY-- 194 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~e------------------e~pdi~~~y~~~-- 194 (784)
.-.+|+++|.|+++||+.|+.+... + .++.+.+. ++..|.|+.+ +.++..+.|.+.
T Consensus 34 ~~~gk~~lv~F~~~~C~~C~~~~~~-l--~~l~~~~~-~v~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (165)
T 3ha9_A 34 NVGGDVVILWFMAAWCPSCVYMADL-L--DRLTEKYR-EISVIAIDFWTAEALKALGLNKPGYPPPDTPEMFRKFIANYG 109 (165)
T ss_dssp GCCSSEEEEEEECTTCTTHHHHHHH-H--HHHHHHCT-TEEEEEEECCSHHHHHHHTCCSTTSCCCCCHHHHHHHHHHHS
T ss_pred HhCCCEEEEEEECCCCcchhhhHHH-H--HHHHHHcC-CcEEEEEEecccccccccccccccCCCCCCHHHHHHHHHHcC
Confidence 3468999999999999999998742 1 23333333 5666666655 344333333221
Q ss_pred ------------HHHhcCCCCCCcEEEECCCCceecccccc
Q 003940 195 ------------VQALYGGGGWPLSVFLSPDLKPLMGGTYF 223 (784)
Q Consensus 195 ------------~q~~~g~~G~P~~vfl~pdg~pi~~~tY~ 223 (784)
+...+++.++|+++++|++|+++. .++.
T Consensus 110 ~~~~~~~~d~~~~~~~~~v~~~P~~~lid~~G~i~~-~g~~ 149 (165)
T 3ha9_A 110 DPSWIMVMDDGSLVEKFNVRSIDYIVIMDKSSNVLY-AGTT 149 (165)
T ss_dssp CTTSEEEECCSHHHHHTTCCSSSEEEEEETTCCEEE-EEES
T ss_pred CCCeeEEeChHHHHHHhCCCCceEEEEEcCCCcEEE-eCCC
Confidence 112247889999999999999998 5555
No 145
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Probab=98.42 E-value=3.9e-07 Score=84.81 Aligned_cols=82 Identities=12% Similarity=0.105 Sum_probs=55.3
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh--cccEEEEEcCCCCccHHHHH-----------------HHH
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY-----------------MTY 194 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln--~~FV~VkvD~ee~pdi~~~y-----------------~~~ 194 (784)
+.-+||+|+|.|+++||+.|+.+... + .++.+.+. +++..|.|+.+..++..+.| ...
T Consensus 24 ~~~~gk~vll~F~a~wC~~C~~~~~~-l--~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (144)
T 1o73_A 24 GSLVGKTVFLYFSASWCPPCRGFTPV-L--AEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSEL 100 (144)
T ss_dssp GGGTTCEEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHH
T ss_pred HHhCCCEEEEEEECcCCHHHHHHHHH-H--HHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHH
Confidence 34468999999999999999988753 2 24555554 35666666665433211111 112
Q ss_pred HHHhcCCCCCCcEEEEC-CCCceecc
Q 003940 195 VQALYGGGGWPLSVFLS-PDLKPLMG 219 (784)
Q Consensus 195 ~q~~~g~~G~P~~vfl~-pdg~pi~~ 219 (784)
.+. +++.++|++++++ ++|+++..
T Consensus 101 ~~~-~~v~~~Pt~~lid~~~G~i~~~ 125 (144)
T 1o73_A 101 GKT-FGVESIPTLITINADTGAIIGT 125 (144)
T ss_dssp HHH-HTCCSSSEEEEEETTTCCEEES
T ss_pred HHH-cCCCCCCEEEEEECCCCeEEec
Confidence 222 3889999999999 89999875
No 146
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Probab=98.41 E-value=7.5e-07 Score=83.47 Aligned_cols=82 Identities=10% Similarity=0.028 Sum_probs=55.8
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh--cccEEEEEcCCCCccHHHHH-----------------HHH
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY-----------------MTY 194 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln--~~FV~VkvD~ee~pdi~~~y-----------------~~~ 194 (784)
+.-.||+|+|.|+++||+.|+.+... + .++++.+. +++..|.|+.++.++..+.| ...
T Consensus 24 ~~~~gk~vll~F~a~wC~~C~~~~p~-l--~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 100 (146)
T 1o8x_A 24 KSLAGKLVFFYFSASWCPPARGFTPQ-L--IEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKL 100 (146)
T ss_dssp GGGTTCEEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHH
T ss_pred HHhCCCEEEEEEEccCCHHHHHHHHH-H--HHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHH
Confidence 34468999999999999999988653 3 35666665 36666666665433211111 112
Q ss_pred HHHhcCCCCCCcEEEEC-CCCceecc
Q 003940 195 VQALYGGGGWPLSVFLS-PDLKPLMG 219 (784)
Q Consensus 195 ~q~~~g~~G~P~~vfl~-pdg~pi~~ 219 (784)
.+ .+++.++|++++++ ++|+++..
T Consensus 101 ~~-~~~v~~~Pt~~lid~~~G~i~~~ 125 (146)
T 1o8x_A 101 SK-HFNVESIPTLIGVDADSGDVVTT 125 (146)
T ss_dssp HH-HTTCCSSSEEEEEETTTCCEEES
T ss_pred HH-HhCCCCCCEEEEEECCCCeEEEe
Confidence 22 24889999999999 89999875
No 147
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=98.40 E-value=4.5e-08 Score=93.50 Aligned_cols=78 Identities=12% Similarity=0.032 Sum_probs=48.6
Q ss_pred HHHHHHhhcCCcEEEEEcccC--ChhhhhhhhcccCCHHHHHHHhcccE--EEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003940 129 EAFAEARKRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLLNDWFV--SIKVDREERPDVDKVYMTYVQALYGGGGW 204 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~~w--C~wC~~Me~etf~d~eVa~~ln~~FV--~VkvD~ee~pdi~~~y~~~~q~~~g~~G~ 204 (784)
+-|+..-+++++++|.|+++| |+.|+.|.. .|+ ++++.+ .++. .++||.++.+++.+.| ++.|+
T Consensus 25 ~~f~~~i~~~~~~vv~f~~~~~~C~~C~~l~P-~l~--~la~~~-~~v~~~~~~Vd~d~~~~la~~~--------~V~~i 92 (142)
T 2es7_A 25 STVDDWIKRVGDGVILLSSDPRRTPEVSDNPV-MIA--ELLREF-PQFDWQVAVADLEQSEAIGDRF--------NVRRF 92 (142)
T ss_dssp C--------CCSEEEEECCCSCC----CCHHH-HHH--HHHHTC-TTSCCEEEEECHHHHHHHHHTT--------TCCSS
T ss_pred ccHHHHHHhCCCEEEEEECCCCCCccHHHHHH-HHH--HHHHHh-cccceeEEEEECCCCHHHHHhc--------CCCcC
Confidence 445555556777999999988 999999975 332 455545 4577 8999999888877665 89999
Q ss_pred CcEEEECCCCceecc
Q 003940 205 PLSVFLSPDLKPLMG 219 (784)
Q Consensus 205 P~~vfl~pdg~pi~~ 219 (784)
||++|+ .+|+++..
T Consensus 93 PT~~~f-k~G~~v~~ 106 (142)
T 2es7_A 93 PATLVF-TDGKLRGA 106 (142)
T ss_dssp SEEEEE-SCC----C
T ss_pred CeEEEE-eCCEEEEE
Confidence 999999 89998764
No 148
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}
Probab=98.40 E-value=6.2e-07 Score=95.73 Aligned_cols=85 Identities=15% Similarity=0.238 Sum_probs=63.9
Q ss_pred CCcccccchHHHHHHHh-hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCC--CCccHHHHHHHHH
Q 003940 119 NPVDWFAWGEEAFAEAR-KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYV 195 (784)
Q Consensus 119 ~~v~W~~~~~eal~~Ak-~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~e--e~pdi~~~y~~~~ 195 (784)
.+-++..-..+-++..- +.+|||+|.|+++||+.|+.|..+ | .++++.++..+..++||.+ +.+++.+.|
T Consensus 15 ~~~~vv~lt~~~f~~~i~~~~~~vlV~F~A~wC~~C~~~~p~-~--~~la~~~~~~~~~~~v~~d~~~~~~l~~~~---- 87 (298)
T 3ed3_A 15 SDPHISELTPKSFDKAIHNTNYTSLVEFYAPWCGHCKKLSST-F--RKAAKRLDGVVQVAAVNCDLNKNKALCAKY---- 87 (298)
T ss_dssp SCTTCEECCHHHHHHHHTSSSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTSEEEEEETTSTTTHHHHHHT----
T ss_pred CCCCeEEeCHHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHccCCcEEEEEEccCccCHHHHHhC----
Confidence 33444555567777765 679999999999999999999873 3 4778888766666777665 566666555
Q ss_pred HHhcCCCCCCcEEEECCCC
Q 003940 196 QALYGGGGWPLSVFLSPDL 214 (784)
Q Consensus 196 q~~~g~~G~P~~vfl~pdg 214 (784)
++.|+|+++|+.+.+
T Consensus 88 ----~I~~~Pt~~~~~~g~ 102 (298)
T 3ed3_A 88 ----DVNGFPTLMVFRPPK 102 (298)
T ss_dssp ----TCCBSSEEEEEECCC
T ss_pred ----CCCccceEEEEECCc
Confidence 899999999998643
No 149
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}
Probab=98.40 E-value=4.4e-07 Score=88.48 Aligned_cols=84 Identities=12% Similarity=0.135 Sum_probs=58.4
Q ss_pred HHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcc-c------EEEEEcCCC-CccHHHHHHHHHHH-------
Q 003940 133 EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-F------VSIKVDREE-RPDVDKVYMTYVQA------- 197 (784)
Q Consensus 133 ~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~-F------V~VkvD~ee-~pdi~~~y~~~~q~------- 197 (784)
.+.-.||+|+|.|+++||+.|+.+... + .++.+.+.+. + ..|.|+.++ .++..+.|.+....
T Consensus 54 l~~~~gk~vlv~F~a~~C~~C~~~~~~-l--~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d 130 (183)
T 3lwa_A 54 LSDFENQVVILNAWGQWCAPCRSESDD-L--QIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDFVTDNGLDYPSIYD 130 (183)
T ss_dssp GGGGTTSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHHHHHTTCCSCEEEC
T ss_pred HHHhCCCEEEEEEECCcCHhHHHHHHH-H--HHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHHHHHcCCCccEEEC
Confidence 344468999999999999999987653 3 3455555543 6 777787776 56655555432111
Q ss_pred --------h--cCCCCCCcEEEECCCCceecc
Q 003940 198 --------L--YGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 198 --------~--~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+ .++.++|++++++++|+++..
T Consensus 131 ~~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~ 162 (183)
T 3lwa_A 131 PPFMTAASLGGVPASVIPTTIVLDKQHRPAAV 162 (183)
T ss_dssp TTCGGGGGTTTCCTTCCSEEEEECTTSCEEEE
T ss_pred CcchHHHHhccCCCCCCCeEEEECCCCcEEEE
Confidence 1 146789999999999999875
No 150
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.39 E-value=8.6e-07 Score=83.16 Aligned_cols=80 Identities=15% Similarity=0.197 Sum_probs=50.6
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCC-ccHHHHHH---------------HHHHHh
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREER-PDVDKVYM---------------TYVQAL 198 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~-pdi~~~y~---------------~~~q~~ 198 (784)
-.+|+++|.|+++||+.|+.+... ++ ++.+.+.+ ++..|-|+.+.. ++..+.|. ...+ .
T Consensus 26 ~~gk~~lv~f~~~~C~~C~~~~~~-l~--~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~ 101 (153)
T 2l5o_A 26 LQGKVTLINFWFPSCPGCVSEMPK-II--KTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQ-A 101 (153)
T ss_dssp HTTCEEEEEEECTTCTTHHHHHHH-HH--HHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHH-H
T ss_pred hCCCEEEEEEECCCCccHHHHHHH-HH--HHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHH-H
Confidence 468999999999999999988653 22 45555543 355555443211 11111110 0111 1
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003940 199 YGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 199 ~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+|+.++|++++++++|+++..
T Consensus 102 ~~i~~~P~~~lid~~G~i~~~ 122 (153)
T 2l5o_A 102 FGTQVYPTSVLIGKKGEILKT 122 (153)
T ss_dssp HTCCSSSEEEEECSSSCCCEE
T ss_pred cCCCccCeEEEECCCCcEEEE
Confidence 388899999999999998754
No 151
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=98.39 E-value=3.6e-07 Score=76.08 Aligned_cols=65 Identities=17% Similarity=0.034 Sum_probs=50.9
Q ss_pred EEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceeccc
Q 003940 141 IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 141 I~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~~ 220 (784)
+.|.|+++||+.|+.|.... .++++.++.++..++|| .+++.+.| |+.|+|+++| +|+++..
T Consensus 2 ~~v~f~a~wC~~C~~~~~~l---~~~~~~~~~~~~~~~v~---~~~~~~~~--------~v~~~Pt~~~---~G~~~~~- 63 (77)
T 1ilo_A 2 MKIQIYGTGCANCQMLEKNA---REAVKELGIDAEFEKIK---EMDQILEA--------GLTALPGLAV---DGELKIM- 63 (77)
T ss_dssp EEEEEECSSSSTTHHHHHHH---HHHHHHTTCCEEEEEEC---SHHHHHHH--------TCSSSSCEEE---TTEEEEC-
T ss_pred cEEEEEcCCChhHHHHHHHH---HHHHHHcCCceEEEEec---CHHHHHHC--------CCCcCCEEEE---CCEEEEc-
Confidence 46899999999999998643 46777777678889998 45555554 8999999998 8998776
Q ss_pred ccc
Q 003940 221 TYF 223 (784)
Q Consensus 221 tY~ 223 (784)
+..
T Consensus 64 G~~ 66 (77)
T 1ilo_A 64 GRV 66 (77)
T ss_dssp SSC
T ss_pred CCC
Confidence 444
No 152
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=98.37 E-value=3.7e-07 Score=99.03 Aligned_cols=78 Identities=19% Similarity=0.118 Sum_probs=64.2
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhc------ccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVE------SFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYG 200 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~e------tf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g 200 (784)
++-++.+.+++++++|.|+|+||+ |+.|..+ +|+ ++++.+.. ++..++||.++.+++.+.| |
T Consensus 18 ~~~f~~~i~~~~~~lV~F~a~wC~-c~~~~p~~~~~~~~~~--~~a~~~~~~~v~~~~Vd~~~~~~l~~~~--------~ 86 (350)
T 1sji_A 18 EKNFKQVLKKYDVLCLYYHESVSS-DKVAQKQFQLKEIVLE--LVAQVLEHKDIGFVMVDAKKEAKLAKKL--------G 86 (350)
T ss_dssp HHHHHHHHTTCSEEEEEEECCSCS-SSTTSHHHHHHHHHHH--HHHHHGGGSSEEEEEEETTTTHHHHHHH--------T
T ss_pred HHHHHHHHhhCCeEEEEEECCCCc-chhhCchhhhhhHHHH--HHHHHHhhcCcEEEEEeCCCCHHHHHhc--------C
Confidence 566777778899999999999999 9776543 254 77888876 5999999999998887776 8
Q ss_pred CCCCCcEEEECCCCcee
Q 003940 201 GGGWPLSVFLSPDLKPL 217 (784)
Q Consensus 201 ~~G~P~~vfl~pdg~pi 217 (784)
+.|+||++|+ .+|++.
T Consensus 87 v~~~Pt~~~~-~~g~~~ 102 (350)
T 1sji_A 87 FDEEGSLYVL-KGDRTI 102 (350)
T ss_dssp CCSTTEEEEE-ETTEEE
T ss_pred CCccceEEEE-ECCcEE
Confidence 9999999999 678754
No 153
>3h7l_A Endoglucanase; dehydrogenase, PSI-2, NYSGXRC, structural GEN protein structure initiative; 2.30A {Vibrio parahaemolyticus}
Probab=98.37 E-value=8e-06 Score=94.48 Aligned_cols=184 Identities=13% Similarity=0.088 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhH-------------------HHHHHHHHHHHHHHHc
Q 003940 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKML-------------------YDQGQLANVYLDAFSL 395 (784)
Q Consensus 335 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKML-------------------yDNA~Ll~~ya~Ay~~ 395 (784)
+++++-+.--+|=|.+ .++. .|+||. .|...|.-+.-+..+ --|++++.+++.|+++
T Consensus 190 ~~lldE~rWg~D~llk--m~~~-~g~~y~-qVgd~W~~d~~~R~~~~~~~~~~~~~~~y~~~~~~~agl~aAALA~Asrv 265 (586)
T 3h7l_A 190 TRLIEEALFGADFLVR--MQNE-KGFFYM-TVFDKWSKDTAQREICAYETQLGHKFDDYQAGFRQGGGVAIAALAAASRL 265 (586)
T ss_dssp HHHHHHHHHHHHHHHH--TBCT-TSCBBC-EEECTTCCCGGGCEEEEEETTTTEEESCCBCCGGGTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHh--cccC-CCeEEE-EecCCCCCCCCccccccccCCCCCCCcceecCCCCcHHHHHHHHHHHhcc
Confidence 5788888888888877 6664 577775 444447532111100 1389999999999999
Q ss_pred -----cCChHHHHHHHHHHHHHHHhccCCCCceeecccCCCccccccccccCCceEEechHHHHHHhhhhHHHHHHHhcc
Q 003940 396 -----TKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEHAILFKEHYYL 470 (784)
Q Consensus 396 -----t~d~~y~~~A~~t~~fl~~~m~~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~~~l~~~~f~l 470 (784)
++.+.|++.|+++++|+.+++. . |. .++.
T Consensus 266 f~d~~~~a~~~L~aA~~a~~fa~~~~~----~-y~---~~g~-------------------------------------- 299 (586)
T 3h7l_A 266 GVHGEYDQQKYRNAAENGYWHLKEHNT----Q-YL---NDGE-------------------------------------- 299 (586)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHHHHHH----H-HS---TTSC--------------------------------------
T ss_pred cCCCCcChHHHHHHHHHHHHHHHhcCc----c-cc---CCCC--------------------------------------
Confidence 5567899999999999998642 1 21 0000
Q ss_pred cCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHHHH
Q 003940 471 KPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGLVI 550 (784)
Q Consensus 471 ~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal~I 550 (784)
.| +.||. .++
T Consensus 300 --~~-------------------------------------------------------------~~De~-------~~~ 309 (586)
T 3h7l_A 300 --EN-------------------------------------------------------------IIDEY-------CAL 309 (586)
T ss_dssp --CC-------------------------------------------------------------HHHHH-------HHH
T ss_pred --cc-------------------------------------------------------------chhHH-------HHH
Confidence 00 12443 579
Q ss_pred HHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHHHHHH
Q 003940 551 SSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLL 630 (784)
Q Consensus 551 ~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li~aLL 630 (784)
||.+++|+++++ +.|++.|+..++.+.+++++.+.++++++..++.....-.....+..+.+|+
T Consensus 310 WAA~eLy~ATgd----------------~~YL~~a~~~a~~l~~~~~~~~~~g~~w~~~d~~~r~~~d~a~~gl~~iaLl 373 (586)
T 3h7l_A 310 LASVELFKATKE----------------TRYLEESRLWAQRLVARQMSDEQIQHFWSANQDGSRPYFHAAEAGLPTIALC 373 (586)
T ss_dssp HHHHHHHHHHCC----------------HHHHHHHHHHHHHHHTTEECCSSCSSEEBSSSSSSSBCCCTTTTTHHHHHHH
T ss_pred HHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhccCCccCCCcCCCcccCCcccccccccHHHHHHHH
Confidence 999999999998 8999999999999999998766788888754432211111114567788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHH
Q 003940 631 DLYEFGSGTKWLVWAIELQNTQDE 654 (784)
Q Consensus 631 ~LYeaTgd~~yL~~A~~L~~~~~~ 654 (784)
.+..++++..+.+.|++++....+
T Consensus 374 ~l~~~~~d~~~~~~a~~~i~~~~d 397 (586)
T 3h7l_A 374 EYLAIEDDSVQTESVKCIVNRACE 397 (586)
T ss_dssp HHHHHCCSTTTTHHHHHHHHHHHH
T ss_pred HhhhhcCChHHHHHHHHHHHHHhh
Confidence 999999999888888888777665
No 154
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}
Probab=98.36 E-value=8.7e-07 Score=84.20 Aligned_cols=80 Identities=6% Similarity=0.037 Sum_probs=55.5
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHH---------------HHHHhcC
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMT---------------YVQALYG 200 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~---------------~~q~~~g 200 (784)
.||||+|.|+++||+.|+.+.. .++ ++.+.+.+ ++..|.|+.++.++..+.|.. .+...+|
T Consensus 34 ~gk~vll~F~a~wC~~C~~~~~-~l~--~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 110 (152)
T 2lrt_A 34 KGKVVLIDFTVYNNAMSAAHNL-ALR--ELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYN 110 (152)
T ss_dssp GGSEEEEEEECTTCHHHHHHHH-HHH--HHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHT
T ss_pred CCCEEEEEEEcCCChhhHHHHH-HHH--HHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcC
Confidence 5899999999999999998654 232 45555543 478888877765543222210 0112238
Q ss_pred CCCCCcEEEECCCCceecc
Q 003940 201 GGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 201 ~~G~P~~vfl~pdg~pi~~ 219 (784)
+.++|+++++|++|+++..
T Consensus 111 v~~~P~~~lid~~G~i~~~ 129 (152)
T 2lrt_A 111 VTNLPSVFLVNRNNELSAR 129 (152)
T ss_dssp CCSCSEEEEEETTTEEEEE
T ss_pred cccCceEEEECCCCeEEEe
Confidence 8899999999999999875
No 155
>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}
Probab=98.35 E-value=5.1e-07 Score=99.21 Aligned_cols=75 Identities=13% Similarity=0.250 Sum_probs=60.3
Q ss_pred HHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHH------hcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003940 131 FAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLL------NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (784)
Q Consensus 131 l~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~l------n~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~ 204 (784)
+..+.+++|+|||.|+++||+.|+.|..+ | .++++.+ +.+++.++||.++.+++.+.| ++.|+
T Consensus 15 f~~~~~~~~~vlV~F~a~wC~~C~~~~p~-~--~~~a~~~~~~~~~~~~v~~~~Vd~~~~~~l~~~~--------~v~~~ 83 (382)
T 2r2j_A 15 IDEILNNADVALVNFYADWCRFSQMLHPI-F--EEASDVIKEEFPNENQVVFARVDCDQHSDIAQRY--------RISKY 83 (382)
T ss_dssp HHHHHHHCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTCC---CCEEEEEEETTTCHHHHHHT--------TCCEE
T ss_pred HHHHHhcCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHHHhhcCCCCceEEEEEECCccHHHHHhc--------CCCcC
Confidence 44444678999999999999999999874 4 3677777 335899999999988877766 89999
Q ss_pred CcEEEECCCCcee
Q 003940 205 PLSVFLSPDLKPL 217 (784)
Q Consensus 205 P~~vfl~pdg~pi 217 (784)
|+++|+ .+|+++
T Consensus 84 Pt~~~f-~~G~~~ 95 (382)
T 2r2j_A 84 PTLKLF-RNGMMM 95 (382)
T ss_dssp SEEEEE-ETTEEE
T ss_pred CEEEEE-eCCcEe
Confidence 999987 577765
No 156
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=98.34 E-value=6.4e-07 Score=90.60 Aligned_cols=75 Identities=21% Similarity=0.294 Sum_probs=58.9
Q ss_pred hHHHHHHHhhcCCcE-EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003940 127 GEEAFAEARKRDVPI-FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 127 ~~eal~~Ak~e~KpI-~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P 205 (784)
.++.++...+.++|+ +|.|+++||+.|+.|.. .+ .++++.. .++..++||.++.+++.+.| ++.|+|
T Consensus 124 ~~~~~~~~~~~~~~~~~v~F~a~wC~~C~~~~~-~~--~~~~~~~-~~v~~~~vd~~~~~~l~~~~--------~v~~~P 191 (229)
T 2ywm_A 124 SEKTLELLQVVDIPIEIWVFVTTSCGYCPSAAV-MA--WDFALAN-DYITSKVIDASENQDLAEQF--------QVVGVP 191 (229)
T ss_dssp CHHHHHHHTTCCSCEEEEEEECTTCTTHHHHHH-HH--HHHHHHC-TTEEEEEEEGGGCHHHHHHT--------TCCSSS
T ss_pred CHHHHHHHHhcCCCeEEEEEECCCCcchHHHHH-HH--HHHHHHC-CCeEEEEEECCCCHHHHHHc--------CCcccC
Confidence 367777777788888 78899999999999974 22 2344443 36888999999988887766 899999
Q ss_pred cEEEECCCCce
Q 003940 206 LSVFLSPDLKP 216 (784)
Q Consensus 206 ~~vfl~pdg~p 216 (784)
+++| +|++
T Consensus 192 t~~~---~G~~ 199 (229)
T 2ywm_A 192 KIVI---NKGV 199 (229)
T ss_dssp EEEE---GGGT
T ss_pred EEEE---CCEE
Confidence 9998 7874
No 157
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}
Probab=97.66 E-value=6.9e-08 Score=89.50 Aligned_cols=83 Identities=23% Similarity=0.170 Sum_probs=53.2
Q ss_pred hcCC-cEEEEEcccCChhhhhhhhcccCCHHHHHHH---hcccEEEEEcCCCCccHHHHHHH-----------------H
Q 003940 136 KRDV-PIFLSIGYSTCHWCHVMEVESFEDEGVAKLL---NDWFVSIKVDREERPDVDKVYMT-----------------Y 194 (784)
Q Consensus 136 ~e~K-pI~l~~~~~wC~wC~~Me~etf~d~eVa~~l---n~~FV~VkvD~ee~pdi~~~y~~-----------------~ 194 (784)
-.|| +|+|.|+++||+.|+.+... ++ ++.+.+ .+++..|.|+.++.++..+.|.+ .
T Consensus 23 ~~gk~~vll~F~a~wC~~C~~~~~~-l~--~~~~~~~~~~~~~~v~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (143)
T 2lus_A 23 LKDKDIIGFYFSAHWCPPCRGFTPI-LA--DMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPYRSGPASN 99 (143)
Confidence 4578 99999999999999987653 32 344444 23555566655544321111111 0
Q ss_pred HHHhcCCCCCCcEEEECCCCceecccc
Q 003940 195 VQALYGGGGWPLSVFLSPDLKPLMGGT 221 (784)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdg~pi~~~t 221 (784)
+...+++.++|++++++++|+++...+
T Consensus 100 ~~~~~~v~~~P~~~lid~~G~i~~~~~ 126 (143)
T 2lus_A 100 VTAKYGITGIPALVIVKKDGTLISMNG 126 (143)
Confidence 111237789999999999999987643
No 158
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=98.31 E-value=3.9e-07 Score=85.78 Aligned_cols=78 Identities=21% Similarity=0.150 Sum_probs=50.1
Q ss_pred CcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHH-----------------HHHHHhcCC
Q 003940 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYM-----------------TYVQALYGG 201 (784)
Q Consensus 139 KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~-----------------~~~q~~~g~ 201 (784)
|||+|.|+++||+.|+.+.... .++.+.++=.||.|.+|.++.++..+.|. ..+...+|+
T Consensus 31 k~vll~f~~~~C~~C~~~~~~l---~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v 107 (154)
T 3ia1_A 31 KPAVIVFWASWCTVCKAEFPGL---HRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKV 107 (154)
T ss_dssp SSEEEEEECTTCHHHHHHHHHH---HHHHHHHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSB
T ss_pred CeEEEEEEcccChhHHHHHHHH---HHHHHHcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCC
Confidence 9999999999999999987532 34444442234555553233332222221 111223488
Q ss_pred CCCCcEEEECCCCceecc
Q 003940 202 GGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 202 ~G~P~~vfl~pdg~pi~~ 219 (784)
.++|++++++++|+++..
T Consensus 108 ~~~P~~~lid~~G~i~~~ 125 (154)
T 3ia1_A 108 LGQPWTFVVDREGKVVAL 125 (154)
T ss_dssp CSSCEEEEECTTSEEEEE
T ss_pred CcccEEEEECCCCCEEEE
Confidence 899999999999998875
No 159
>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}
Probab=98.29 E-value=1e-06 Score=81.10 Aligned_cols=78 Identities=10% Similarity=0.066 Sum_probs=59.7
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCcc----HHHHHHHHHHHhcCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPD----VDKVYMTYVQALYGGGG 203 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pd----i~~~y~~~~q~~~g~~G 203 (784)
.+.|+++.+++|||+|+|++.||+.|+.|.. .|+ +.++ ..+.-.++||+++.++ +...| |+.+
T Consensus 14 ~e~f~~ii~~~~~vvi~khatwCgpc~~~~~-~~e--~~~~--~~~v~~~~vdVde~r~~Sn~IA~~~--------~V~h 80 (112)
T 3iv4_A 14 IDQFEQVIEENKYVFVLKHSETCPISANAYD-QFN--KFLY--ERDMDGYYLIVQQERDLSDYIAKKT--------NVKH 80 (112)
T ss_dssp HHHHHHHHHHCSEEEEEEECTTCHHHHHHHH-HHH--HHHH--HHTCCEEEEEGGGGHHHHHHHHHHH--------TCCC
T ss_pred HHHHHHHHhcCCCEEEEEECCcCHhHHHHHH-HHH--HHhc--cCCceEEEEEeecCchhhHHHHHHh--------CCcc
Confidence 5667778778999999999999999999975 333 2333 2457777888888766 44444 8884
Q ss_pred -CCcEEEECCCCceecc
Q 003940 204 -WPLSVFLSPDLKPLMG 219 (784)
Q Consensus 204 -~P~~vfl~pdg~pi~~ 219 (784)
.|+.+++ .+|++++.
T Consensus 81 ~sPq~il~-k~G~~v~~ 96 (112)
T 3iv4_A 81 ESPQAFYF-VNGEMVWN 96 (112)
T ss_dssp CSSEEEEE-ETTEEEEE
T ss_pred CCCeEEEE-ECCEEEEE
Confidence 9999988 88999886
No 160
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=98.29 E-value=5.2e-07 Score=101.64 Aligned_cols=69 Identities=20% Similarity=0.371 Sum_probs=56.9
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc--ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~--~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~p 212 (784)
.+.+|+|+|.|+++||+.|+.|... + .++++.+.. +++.++||.++. ++.+.| ++.|+|+++|+.+
T Consensus 367 ~~~~k~vlv~f~a~wC~~C~~~~p~-~--~~l~~~~~~~~~v~~~~id~~~~-~~~~~~--------~v~~~Pt~~~~~~ 434 (481)
T 3f8u_A 367 NNENKDVLIEFYAPWCGHCKNLEPK-Y--KELGEKLSKDPNIVIAKMDATAN-DVPSPY--------EVRGFPTIYFSPA 434 (481)
T ss_dssp TCTTCEEEEEEECTTBHHHHHHHHH-H--HHHHHHTTTCSSEEEEEEETTSS-CCCTTC--------CCCSSSEEEEECT
T ss_pred hcCCCcEEEEEecCcChhHHHhhHH-H--HHHHHHhccCCCEEEEEEECCch-hhHhhC--------CCcccCEEEEEeC
Confidence 4569999999999999999999874 3 467777765 699999999876 554444 8899999999988
Q ss_pred CCc
Q 003940 213 DLK 215 (784)
Q Consensus 213 dg~ 215 (784)
+|+
T Consensus 435 ~~~ 437 (481)
T 3f8u_A 435 NKK 437 (481)
T ss_dssp TCT
T ss_pred CCe
Confidence 776
No 161
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}
Probab=98.28 E-value=3e-06 Score=79.65 Aligned_cols=81 Identities=14% Similarity=0.068 Sum_probs=56.3
Q ss_pred cCCcEEEEEcccCChh--hhhhhhcccCCHHHHHHH-h-cccEEEEEcCCCCccHHHHHHH-----------------HH
Q 003940 137 RDVPIFLSIGYSTCHW--CHVMEVESFEDEGVAKLL-N-DWFVSIKVDREERPDVDKVYMT-----------------YV 195 (784)
Q Consensus 137 e~KpI~l~~~~~wC~w--C~~Me~etf~d~eVa~~l-n-~~FV~VkvD~ee~pdi~~~y~~-----------------~~ 195 (784)
.||+|+|.|+++||+. |+.+.. .++ ++.+.+ . +++..|.|+.++.++.-+.|.+ .+
T Consensus 32 ~gk~vll~F~a~~C~~v~C~~~~~-~l~--~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 108 (150)
T 3fw2_A 32 KQKSLLINFWASWNDSISQKQSNS-ELR--EIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEV 108 (150)
T ss_dssp TTSEEEEEEECTTCCCHHHHHHHH-HHH--HHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHH
T ss_pred CCCEEEEEEEeCCCCchHHHHHHH-HHH--HHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHH
Confidence 5899999999999999 998764 222 345555 3 3477777777665433333321 12
Q ss_pred HHhcCCCCCCcEEEECCCCceeccc
Q 003940 196 QALYGGGGWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 196 q~~~g~~G~P~~vfl~pdg~pi~~~ 220 (784)
...+|+.++|+++++|++|+++...
T Consensus 109 ~~~~~v~~~P~~~lid~~G~i~~~~ 133 (150)
T 3fw2_A 109 AKQYSIYKIPANILLSSDGKILAKN 133 (150)
T ss_dssp HHHTTCCSSSEEEEECTTSBEEEES
T ss_pred HHHcCCCccCeEEEECCCCEEEEcc
Confidence 2234889999999999999998763
No 162
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=98.26 E-value=1.3e-06 Score=99.10 Aligned_cols=75 Identities=17% Similarity=0.181 Sum_probs=62.0
Q ss_pred HHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003940 130 AFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (784)
Q Consensus 130 al~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~v 208 (784)
-++.+.++++++||.|+++||+.|+.|..+ | .++++.++. ++..++||.++.+++.+.| |+.|+||++
T Consensus 23 ~f~~~~~~~~~~lv~F~a~wC~~C~~~~p~-~--~~~a~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Pt~~ 91 (504)
T 2b5e_A 23 SFNEYIQSHDLVLAEFFAPWCGHCKNMAPE-Y--VKAAETLVEKNITLAQIDCTENQDLCMEH--------NIPGFPSLK 91 (504)
T ss_dssp THHHHHTTCSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTTCEEEEEETTTCHHHHHHT--------TCCSSSEEE
T ss_pred HHHHHHhcCCeEEEEEECCCCHHHHHhHHH-H--HHHHHHhccCCeEEEEEECCCCHHHHHhc--------CCCcCCEEE
Confidence 345555779999999999999999999874 4 478888876 4999999999988887766 899999999
Q ss_pred EECCCCce
Q 003940 209 FLSPDLKP 216 (784)
Q Consensus 209 fl~pdg~p 216 (784)
|+.. |+.
T Consensus 92 ~~~~-g~~ 98 (504)
T 2b5e_A 92 IFKN-SDV 98 (504)
T ss_dssp EEET-TCT
T ss_pred EEeC-Ccc
Confidence 9965 553
No 163
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=98.22 E-value=2.8e-06 Score=79.17 Aligned_cols=77 Identities=9% Similarity=-0.026 Sum_probs=52.8
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh----cccEEEEEcCCCCccHHHHHHHH------------------
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN----DWFVSIKVDREERPDVDKVYMTY------------------ 194 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln----~~FV~VkvD~ee~pdi~~~y~~~------------------ 194 (784)
.||+|+|.|+++||+.|+.+.. .+.++.+ +++..|-|+.++.++.-+.+.+.
T Consensus 31 ~gk~vll~F~a~wC~~C~~~~~------~l~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 104 (143)
T 4fo5_A 31 LGRYTLLNFWAAYDAESRARNV------QLANEVNKFGPDKIAMCSISMDEKESIFTETVKIDKLDLSTQFHEGLGKESE 104 (143)
T ss_dssp SCCEEEEEEECTTCHHHHHHHH------HHHHHHTTSCTTTEEEEEEECCSCHHHHHHHHHHHTCCGGGEEECTTGGGSH
T ss_pred CCCEEEEEEEcCcCHHHHHHHH------HHHHHHHHhCcCCEEEEEEEccCCHHHHHHHHHHhCCCCceeeecccccchH
Confidence 6899999999999999998753 4444443 24777777666544322222111
Q ss_pred HHHhcCCCCCCcEEEECCCCceecc
Q 003940 195 VQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+...+++.++|++++++++|+++..
T Consensus 105 ~~~~~~v~~~P~~~lid~~G~i~~~ 129 (143)
T 4fo5_A 105 LYKKYDLRKGFKNFLINDEGVIIAA 129 (143)
T ss_dssp HHHHTTGGGCCCEEEECTTSBEEEE
T ss_pred HHHHcCCCCCCcEEEECCCCEEEEc
Confidence 1122477899999999999999875
No 164
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10
Probab=98.22 E-value=4.5e-06 Score=81.32 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=52.8
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCC-ccHHHHHHHHHHH---------------h
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREER-PDVDKVYMTYVQA---------------L 198 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~-pdi~~~y~~~~q~---------------~ 198 (784)
-.||+|+|.|+++||+.|+.+... + .++.+.+. +++..|.|+.+.. ++..+.|.+.... .
T Consensus 58 ~~gk~vll~F~a~~C~~C~~~~~~-l--~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 134 (186)
T 1jfu_A 58 FRGKTLLVNLWATWCVPCRKEMPA-L--DELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQD 134 (186)
T ss_dssp GTTSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHCBTTEEEEEEECCCSCTTHHHHHHHHTTCCTTCCEECTTCHHHHH
T ss_pred cCCCEEEEEEEeCCCHhHHHHHHH-H--HHHHHHhccCCcEEEEEECCCCCHHHHHHHHHHcCCCCCceEECCcchHHHH
Confidence 368999999999999999987653 3 35566565 4566666665532 3322333221110 0
Q ss_pred cCC----CCCCcEEEECCCCceecc
Q 003940 199 YGG----GGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 199 ~g~----~G~P~~vfl~pdg~pi~~ 219 (784)
++. .++|+++++|++|+++..
T Consensus 135 ~~~~~~~~~~P~~~lid~~G~i~~~ 159 (186)
T 1jfu_A 135 LKAIGRALGMPTSVLVDPQGCEIAT 159 (186)
T ss_dssp HHTTTCCSSSSEEEEECTTSBEEEE
T ss_pred hccccccCCCCEEEEECCCCCEEEE
Confidence 111 389999999999999875
No 165
>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*
Probab=98.21 E-value=1.6e-06 Score=86.25 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=60.0
Q ss_pred hcCCcEEEEEcc-------cCChhhhhhhhcccCCHHHHHHHh-----cccEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003940 136 KRDVPIFLSIGY-------STCHWCHVMEVESFEDEGVAKLLN-----DWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (784)
Q Consensus 136 ~e~KpI~l~~~~-------~wC~wC~~Me~etf~d~eVa~~ln-----~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G 203 (784)
..+.||+|+|+| .||+.|+.|.. +|+ +|++.+. ...+.+|||.++.|++.+.| |+.+
T Consensus 35 ~~~~~vvV~F~A~~~~~~~~wCgpCk~l~P-~~e--~lA~~~~~~~~~~~v~f~kvD~d~~~~la~~~--------~I~s 103 (178)
T 3ga4_A 35 VPGYFNILYITMRGTNSNGMSCQLCHDFEK-TYH--AVADVIRSQAPQSLNLFFTVDVNEVPQLVKDL--------KLQN 103 (178)
T ss_dssp CTTCEEEEEEECCSBCTTSCBCHHHHHHHH-HHH--HHHHHHHHHCTTCCEEEEEEETTTCHHHHHHT--------TCCS
T ss_pred cCCCcEEEEEeCCCCCCCCCCChhHHHHHH-HHH--HHHHHhhhccCCCCEEEEEEECccCHHHHHHc--------CCCC
Confidence 457899999999 49999999985 444 7777776 56889999999999998877 9999
Q ss_pred CCcEEEECCCCcee
Q 003940 204 WPLSVFLSPDLKPL 217 (784)
Q Consensus 204 ~P~~vfl~pdg~pi 217 (784)
.||.+++.+.+.+-
T Consensus 104 iPtl~~F~~g~~~~ 117 (178)
T 3ga4_A 104 VPHLVVYPPAESNK 117 (178)
T ss_dssp SCEEEEECCCCGGG
T ss_pred CCEEEEEcCCCCCC
Confidence 99999998877664
No 166
>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A
Probab=98.21 E-value=2.2e-06 Score=77.29 Aligned_cols=76 Identities=14% Similarity=0.317 Sum_probs=48.5
Q ss_pred HHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEE
Q 003940 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSV 208 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~v 208 (784)
+.++...+ +++|++ |+++||++|+.|.. +.+.+...|..|.||.++... .. ...+...+|+.++|++
T Consensus 11 ~~~~~~~~-~~~vv~-f~a~~C~~C~~~~~-------~l~~~~~~~~~v~v~~~~~~~--~~-~~~l~~~~~v~~~Pt~- 77 (116)
T 2e7p_A 11 KKAKELAS-SAPVVV-FSKTYCGYCNRVKQ-------LLTQVGASYKVVELDELSDGS--QL-QSALAHWTGRGTVPNV- 77 (116)
T ss_dssp HHHHHHHT-SSSEEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGSTTHH--HH-HHHHHHHHSCCSSCEE-
T ss_pred HHHHHHHc-CCCEEE-EECCCChhHHHHHH-------HHHHcCCCeEEEEccCCCChH--HH-HHHHHHHhCCCCcCEE-
Confidence 34444443 567877 99999999999874 233455678888888765411 11 1111112388999998
Q ss_pred EECCCCceecc
Q 003940 209 FLSPDLKPLMG 219 (784)
Q Consensus 209 fl~pdg~pi~~ 219 (784)
|+ +|+.+.+
T Consensus 78 ~~--~g~~v~~ 86 (116)
T 2e7p_A 78 FI--GGKQIGG 86 (116)
T ss_dssp EE--TTEEEEC
T ss_pred EE--CCEEECC
Confidence 55 6787754
No 167
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A
Probab=98.20 E-value=2.5e-06 Score=83.43 Aligned_cols=81 Identities=9% Similarity=0.063 Sum_probs=52.1
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCC-------CccHHHHHHHH--------------
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE-------RPDVDKVYMTY-------------- 194 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee-------~pdi~~~y~~~-------------- 194 (784)
-.+|+|+|.|+++||+.|+.+... + .++.+.+.+.+..|.|+.+. .++..+.|.+.
T Consensus 31 ~~gk~vlv~F~a~~C~~C~~~~~~-l--~~l~~~~~~~~~~v~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~~ 107 (188)
T 2cvb_A 31 FHEPLLAVVFMCNHCPYVKGSIGE-L--VALAERYRGKVAFVGINANDYEKYPEDAPEKMAAFAEEHGIFFPYLLDETQE 107 (188)
T ss_dssp CCSSEEEEEEECSSCHHHHTTHHH-H--HHHHHHTTTTEEEEEEECCCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSSH
T ss_pred hCCCEEEEEEECCCCccHHHHHHH-H--HHHHHHhhcCeEEEEEEcCccccccccCHHHHHHHHHHhCCCceEEECCcch
Confidence 358999999999999999976542 2 23444444336666666531 22222222110
Q ss_pred HHHhcCCCCCCcEEEECCCCceecc
Q 003940 195 VQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 195 ~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+...+++.++|+++|++++|++++.
T Consensus 108 ~~~~~~v~~~P~~~lid~~G~i~~~ 132 (188)
T 2cvb_A 108 VAKAYRALRTPEVFLFDERRLLRYH 132 (188)
T ss_dssp HHHHTTCCEESEEEEECTTCBEEEE
T ss_pred HHHHcCCCCCCeEEEECCCCcEEEE
Confidence 1122478899999999999999887
No 168
>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A
Probab=98.17 E-value=2.2e-06 Score=75.11 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=45.0
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~ 218 (784)
++.|+++||++|+.|+. +.+.+...+ ..+||+++.|++.+.| |+. +|+.++ .+|+++.
T Consensus 3 vv~f~a~~C~~C~~~~~-------~L~~~~~~~-~~~vdid~~~~l~~~~--------g~~-vPtl~~--~~G~~v~ 60 (87)
T 1ttz_A 3 LTLYQRDDCHLCDQAVE-------ALAQARAGA-FFSVFIDDDAALESAY--------GLR-VPVLRD--PMGRELD 60 (87)
T ss_dssp EEEEECSSCHHHHHHHH-------HHHHTTCCC-EEEEECTTCHHHHHHH--------TTT-CSEEEC--TTCCEEE
T ss_pred EEEEECCCCchHHHHHH-------HHHHHHHhh-eEEEECCCCHHHHHHh--------CCC-cCeEEE--ECCEEEe
Confidence 67899999999999874 333344433 4789999999887766 666 999887 7899885
No 169
>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C
Probab=98.16 E-value=1.1e-06 Score=91.47 Aligned_cols=69 Identities=12% Similarity=0.083 Sum_probs=53.4
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~p 216 (784)
.+|+|+|.|+++||+.|+.|.. .| .++++... ++..++||.++ +++...| ++.++||++|+. +|++
T Consensus 132 ~~k~VvV~Fya~wC~~Ck~l~p-~l--~~La~~~~-~v~f~kVd~d~-~~l~~~~--------~I~~~PTll~~~-~G~~ 197 (245)
T 1a0r_P 132 KITTIVVHIYEDGIKGCDALNS-SL--ICLAAEYP-MVKFCKIKASN-TGAGDRF--------SSDVLPTLLVYK-GGEL 197 (245)
T ss_dssp TTCEEEEEEECTTSTTHHHHHH-HH--HHHHHHCT-TSEEEEEEHHH-HCCTTSS--------CTTTCSEEEEEE-TTEE
T ss_pred CCCEEEEEEECCCChHHHHHHH-HH--HHHHHHCC-CCEEEEEeCCc-HHHHHHC--------CCCCCCEEEEEE-CCEE
Confidence 4899999999999999999976 33 34555543 58889999876 5554444 888999999885 8988
Q ss_pred ecc
Q 003940 217 LMG 219 (784)
Q Consensus 217 i~~ 219 (784)
+..
T Consensus 198 v~~ 200 (245)
T 1a0r_P 198 LSN 200 (245)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 170
>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}
Probab=98.16 E-value=5.2e-06 Score=81.48 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=51.6
Q ss_pred cCC-cEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCC-------CccHHHHHHHH-------------
Q 003940 137 RDV-PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-------RPDVDKVYMTY------------- 194 (784)
Q Consensus 137 e~K-pI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee-------~pdi~~~y~~~------------- 194 (784)
.+| ||+|.|+++||+.|+.+... ++ ++.+.+.+ ++..|.|+.+. .++..+.|.+.
T Consensus 44 ~gk~~vlv~F~a~~C~~C~~~~~~-l~--~l~~~~~~~~v~vv~v~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~~~ 120 (196)
T 2ywi_A 44 KSDAATVIMFICNHCPFVKHVQHE-LV--RLANDYMPKGVSFVAINSNDAEQYPEDSPENMKKVAEELGYPFPYLYDETQ 120 (196)
T ss_dssp CCSSEEEEEECCSSCHHHHHHHHH-HH--HHHHHHGGGTCEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECSSC
T ss_pred CCCCeEEEEEeCCCCccHHHHHHH-HH--HHHHHHHhCCcEEEEEECCccccccccCHHHHHHHHHHcCCCceEEECCch
Confidence 577 59999999999999976542 22 34444433 46667766631 22222222110
Q ss_pred -HHHhcCCCCCCcEEEECCCCceeccc
Q 003940 195 -VQALYGGGGWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 195 -~q~~~g~~G~P~~vfl~pdg~pi~~~ 220 (784)
+...+++.++|+++|+|++|++++.+
T Consensus 121 ~~~~~~~v~~~P~~~lid~~G~i~~~~ 147 (196)
T 2ywi_A 121 EVAKAYDAACTPDFYIFDRDLKCVYRG 147 (196)
T ss_dssp HHHHHHTCCEESEEEEEETTCBEEEEE
T ss_pred HHHHHhCCCCCCeEEEEcCCCeEEEcc
Confidence 11123788999999999999998763
No 171
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=98.14 E-value=4e-06 Score=96.36 Aligned_cols=72 Identities=14% Similarity=0.126 Sum_probs=58.3
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc---ccEEEEEcCCC--CccHHHHHHHHHHHhcCCCCCCcEEE
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVF 209 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~---~FV~VkvD~ee--~pdi~~~y~~~~q~~~g~~G~P~~vf 209 (784)
.+.+|+|+|+|+++||+.|+.|... | .++++.+.. .+..++||.++ .+++.+.| ++.|+|+++|
T Consensus 27 ~~~~k~vlV~FyA~WC~pCk~~~P~-l--~~la~~~~~~~~~v~~~~VD~d~d~~~~l~~~~--------~V~~~PTl~~ 95 (519)
T 3t58_A 27 LGSSSAWAVEFFASWCGHAIAFAPT-W--KELANDVKDWRPALNLAVLDCAEETNSAVCREF--------NIAGFPTVRF 95 (519)
T ss_dssp SSCSSEEEEEEECTTSHHHHHHHHH-H--HHHHHHHGGGTTTEEEEEEETTSGGGHHHHHHT--------TCCSBSEEEE
T ss_pred HhCCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHhhCcCCcEEEEEEECCccccHHHHHHc--------CCcccCEEEE
Confidence 4668999999999999999999863 3 577877876 69999999853 66666655 8999999999
Q ss_pred ECC---CCcee
Q 003940 210 LSP---DLKPL 217 (784)
Q Consensus 210 l~p---dg~pi 217 (784)
+++ +|+++
T Consensus 96 f~~g~~~G~~~ 106 (519)
T 3t58_A 96 FQAFTKNGSGA 106 (519)
T ss_dssp ECTTCCSCCCE
T ss_pred EcCcccCCCce
Confidence 998 66644
No 172
>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*
Probab=98.11 E-value=1.7e-06 Score=97.90 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=57.0
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc--------ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--------WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~--------~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
..+|||+|.|+++||+.|+.|... | .++++.+.. .++.++||.++.+++.+.| ++.|+|++
T Consensus 40 ~~~k~VlV~FyA~WC~pCk~~~P~-l--~~la~~~~~~~g~~~~~~v~f~~VD~d~~~~la~~y--------~V~~~PTl 108 (470)
T 3qcp_A 40 APLCPWIVLFYNDGCGACRRYAST-F--SKFAGGLKVEHGKDALQIATAAAVNCASEVDLCRKY--------DINFVPRL 108 (470)
T ss_dssp GGGSCEEEEEECTTCHHHHHHHHH-H--HHHHHTSCCSSCSSGGGGCEEEEEETTTCHHHHHHT--------TCCSSCEE
T ss_pred CCCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHHhhhcccccCceEEEEEEECCCCHHHHHHc--------CCCccCeE
Confidence 457999999999999999999863 3 466666641 4899999999998887766 89999999
Q ss_pred EEECCCCc
Q 003940 208 VFLSPDLK 215 (784)
Q Consensus 208 vfl~pdg~ 215 (784)
+|++++|.
T Consensus 109 ilf~~gg~ 116 (470)
T 3qcp_A 109 FFFYPRDS 116 (470)
T ss_dssp EEEEESSC
T ss_pred EEEECCCc
Confidence 99987664
No 173
>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A
Probab=98.09 E-value=4.1e-06 Score=95.05 Aligned_cols=68 Identities=16% Similarity=0.203 Sum_probs=54.6
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh---cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln---~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~ 211 (784)
.+.+|||+|.|+++||+.|+.|... + .++++.+. .+++.++||.+..+.. . | ++.|+||++|+
T Consensus 373 ~~~~k~vlv~F~a~wC~~C~~~~p~-~--~~l~~~~~~~~~~v~~~~vd~~~~~~~-~-~--------~v~~~Pt~~~~- 438 (504)
T 2b5e_A 373 NDPKKDVLVLYYAPWCGHCKRLAPT-Y--QELADTYANATSDVLIAKLDHTENDVR-G-V--------VIEGYPTIVLY- 438 (504)
T ss_dssp HCTTCCEEEEEECTTCHHHHHHHHH-H--HHHHHHHHHHCSSCEEEEEEGGGCCCS-S-C--------CCSSSSEEEEE-
T ss_pred ccCCCCEEEEEECCCChhHHHHhHH-H--HHHHHHhhccCCcEEEEEecCCccccc-c-C--------CceecCeEEEE-
Confidence 5679999999999999999999874 3 35666654 3799999999876543 2 4 78999999999
Q ss_pred CCCce
Q 003940 212 PDLKP 216 (784)
Q Consensus 212 pdg~p 216 (784)
++|+.
T Consensus 439 ~~G~~ 443 (504)
T 2b5e_A 439 PGGKK 443 (504)
T ss_dssp CCTTS
T ss_pred eCCce
Confidence 78865
No 174
>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A
Probab=98.09 E-value=2.9e-06 Score=95.58 Aligned_cols=75 Identities=19% Similarity=0.227 Sum_probs=61.6
Q ss_pred HHHHhhcC---CcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 131 FAEARKRD---VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 131 l~~Ak~e~---KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
+..+-+++ ++|+|.|+++||+.|+.|..+ | .++++.+...+..++||.++.+++.+.| |+.|+|+.
T Consensus 11 f~~~i~~~~~~~~~lv~F~a~wC~~C~~~~p~-~--~~~a~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Ptl 79 (481)
T 3f8u_A 11 FESRISDTGSAGLMLVEFFAPWCGHAKRLAPE-Y--EAAATRLKGIVPLAKVDCTANTNTCNKY--------GVSGYPTL 79 (481)
T ss_dssp HHHHTTCCSSSSEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTTCCEEEEETTTCHHHHHHT--------TCCEESEE
T ss_pred HHHHHHhCCCCCeEEEEEECCCCHHHHHhHHH-H--HHHHHHhcCceEEEEEECCCCHHHHHhc--------CCCCCCEE
Confidence 44444455 999999999999999999873 3 5788888877889999999998887776 89999999
Q ss_pred EEECCCCcee
Q 003940 208 VFLSPDLKPL 217 (784)
Q Consensus 208 vfl~pdg~pi 217 (784)
+|+ .+|+.+
T Consensus 80 ~~~-~~g~~~ 88 (481)
T 3f8u_A 80 KIF-RDGEEA 88 (481)
T ss_dssp EEE-ETTEEE
T ss_pred EEE-eCCcee
Confidence 988 567654
No 175
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=98.07 E-value=4.7e-06 Score=91.27 Aligned_cols=76 Identities=16% Similarity=-0.035 Sum_probs=58.5
Q ss_pred HHHHhhcCCcEEEEEcccCChhhhhhhh-----cccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCC
Q 003940 131 FAEARKRDVPIFLSIGYSTCHWCHVMEV-----ESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGGGW 204 (784)
Q Consensus 131 l~~Ak~e~KpI~l~~~~~wC~wC~~Me~-----etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~ 204 (784)
++.+-+++++|+|.|+|+||+.|..+.+ -.+ .++++.+.. ++..++||.++.+++.+.| |+.|+
T Consensus 23 f~~~i~~~~~vlV~FyApWC~~~~~~~~l~~~~p~~--e~~a~~~~~~~v~~~~Vd~~~~~~l~~~~--------~V~~~ 92 (367)
T 3us3_A 23 YKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELIL--ELAAQVLEDKGVGFGLVDSEKDAAVAKKL--------GLTEE 92 (367)
T ss_dssp HHHHHHHCSEEEEEEECCCCSSHHHHHHHHHHHHHH--HHHHHHHTTTTEEEEEEETTTTHHHHHHH--------TCCST
T ss_pred HHHHHhhCCeEEEEEECCCchhHHHhhhhccccHHH--HHHHHHhhcCCceEEEEeCcccHHHHHHc--------CCCcC
Confidence 4444466899999999999988744331 123 356777765 5899999999999988877 89999
Q ss_pred CcEEEECCCCcee
Q 003940 205 PLSVFLSPDLKPL 217 (784)
Q Consensus 205 P~~vfl~pdg~pi 217 (784)
||++|+. +|+++
T Consensus 93 PTl~~f~-~G~~~ 104 (367)
T 3us3_A 93 DSIYVFK-EDEVI 104 (367)
T ss_dssp TEEEEEE-TTEEE
T ss_pred ceEEEEE-CCcEE
Confidence 9999997 68875
No 176
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=98.06 E-value=7.2e-06 Score=84.76 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=57.1
Q ss_pred HHHHHHHhhc-CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh----cccEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003940 128 EEAFAEARKR-DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN----DWFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (784)
Q Consensus 128 ~eal~~Ak~e-~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln----~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~ 202 (784)
++.++..++. ++++++.|+++||++|+.+.. .++ +++.... .++..++||.++.+++.+.| ++.
T Consensus 127 ~~~~~~~~~~~~~~~vv~F~a~wC~~C~~~~p-~l~--~la~~~~~~~~~~v~~~~vd~~~~~~~~~~~--------~V~ 195 (243)
T 2hls_A 127 DATKEALKSLKGRVHIETIITPSCPYCPYAVL-LAH--MFAYEAWKQGNPVILSEAVEAYENPDIADKY--------GVM 195 (243)
T ss_dssp HHHHHHHHHCCSCEEEEEEECSSCSSHHHHHH-HHH--HHHHHHHHTTCCCEEEEEEETTTCHHHHHHT--------TCC
T ss_pred HHHHHHHHHcCCCcEEEEEECCCCCCcHHHHH-HHH--HHHHHcccccCCcEEEEEEECccCHHHHHHc--------CCe
Confidence 4455555544 566688999999999999875 333 4555441 46888999999988877665 889
Q ss_pred CCCcEEEECCCCceec
Q 003940 203 GWPLSVFLSPDLKPLM 218 (784)
Q Consensus 203 G~P~~vfl~pdg~pi~ 218 (784)
|+|+++| +|++++
T Consensus 196 ~vPt~~i---~G~~~~ 208 (243)
T 2hls_A 196 SVPSIAI---NGYLVF 208 (243)
T ss_dssp SSSEEEE---TTEEEE
T ss_pred eeCeEEE---CCEEEE
Confidence 9999988 788764
No 177
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=98.05 E-value=9.6e-06 Score=77.51 Aligned_cols=79 Identities=14% Similarity=0.081 Sum_probs=51.5
Q ss_pred cCCcEEEEEcccCChh-hhhhhhcccCCHHHHHHHh-----cccEEEEEcCCC---CccHHHHHHH--------------
Q 003940 137 RDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLN-----DWFVSIKVDREE---RPDVDKVYMT-------------- 193 (784)
Q Consensus 137 e~KpI~l~~~~~wC~w-C~~Me~etf~d~eVa~~ln-----~~FV~VkvD~ee---~pdi~~~y~~-------------- 193 (784)
.||+|+|.|+++||+. |+.+-. .++ ++.+.+. +++..|.|+.+. .|+..+.|.+
T Consensus 25 ~gk~vll~F~~~~C~~~C~~~~~-~l~--~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~~~~~ 101 (171)
T 2rli_A 25 RGQWVLMYFGFTHCPDICPDELE-KLV--QVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTK 101 (171)
T ss_dssp TTSEEEEEEECTTCSSSHHHHHH-HHH--HHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTTCTTCCEEECCHH
T ss_pred CCCEEEEEEEcCCCCchhHHHHH-HHH--HHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence 5899999999999998 998654 222 4555553 355555555442 3332222321
Q ss_pred ----HHHHhcCCCCCC---------------cEEEECCCCceecc
Q 003940 194 ----YVQALYGGGGWP---------------LSVFLSPDLKPLMG 219 (784)
Q Consensus 194 ----~~q~~~g~~G~P---------------~~vfl~pdg~pi~~ 219 (784)
..+ .+|+.+.| +++++|++|+++..
T Consensus 102 ~~~~~~~-~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 145 (171)
T 2rli_A 102 QVAQASH-SYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDY 145 (171)
T ss_dssp HHHHHHH-HSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEE
T ss_pred HHHHHHH-HhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEE
Confidence 122 24777777 89999999999875
No 178
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=98.03 E-value=1.3e-05 Score=76.62 Aligned_cols=79 Identities=18% Similarity=0.118 Sum_probs=51.9
Q ss_pred cCCc-EEEEEc-ccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHH--------------HHHhc
Q 003940 137 RDVP-IFLSIG-YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY--------------VQALY 199 (784)
Q Consensus 137 e~Kp-I~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~--------------~q~~~ 199 (784)
.||+ |+|.|+ ++||+.|+.+-.. + .++.+.+.+ ++..|-|+.+. ++..+.|.+. +...+
T Consensus 27 ~gk~~vvl~F~~a~~C~~C~~~~~~-l--~~~~~~~~~~~v~vv~vs~d~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 102 (161)
T 3drn_A 27 IGKHNIVLYFYPKDDTPGSTREASA-F--RDNWDLLKDYDVVVIGVSSDD-INSHKRFKEKYKLPFILVSDPDKKIRELY 102 (161)
T ss_dssp TTTSEEEEEECSCTTCHHHHHHHHH-H--HHTHHHHHTTCEEEEEEESCC-HHHHHHHHHHTTCCSEEEECTTSHHHHHT
T ss_pred cCCCCEEEEEEcCCCCCchHHHHHH-H--HHHHHHHHHcCCEEEEEeCCC-HHHHHHHHHHhCCCceEEECCcHHHHHHc
Confidence 5787 999999 9999999987542 2 234444443 46666666652 3322222211 11224
Q ss_pred CCCC----CCcEEEECCCCceecc
Q 003940 200 GGGG----WPLSVFLSPDLKPLMG 219 (784)
Q Consensus 200 g~~G----~P~~vfl~pdg~pi~~ 219 (784)
|+.| .|+++++|++|+++..
T Consensus 103 ~v~~~~~~~P~~~lid~~G~i~~~ 126 (161)
T 3drn_A 103 GAKGFILPARITFVIDKKGIIRHI 126 (161)
T ss_dssp TCCCSSSCCCEEEEECTTSBEEEE
T ss_pred CCCCcCcccceEEEECCCCEEEEE
Confidence 7778 9999999999999875
No 179
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}
Probab=98.03 E-value=6.4e-06 Score=90.19 Aligned_cols=83 Identities=14% Similarity=0.110 Sum_probs=56.2
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCC-----CccHHHHHHHH-------------
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-----RPDVDKVYMTY------------- 194 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee-----~pdi~~~y~~~------------- 194 (784)
+.-.+|+|+|.|+++||+.|+.|... + .++.+.+.+ ++..|.|+.++ .++..+.|.+.
T Consensus 78 sdl~GK~vLl~F~atwC~~C~~~~p~-L--~~l~~~~~~~~v~vi~Vs~d~~~~~d~~~~~~~~~~~~~l~fpv~~D~~~ 154 (352)
T 2hyx_A 78 KSLRGKVVLIDFWAYSCINCQRAIPH-V--VGWYQAYKDSGLAVIGVHTPEYAFEKVPGNVAKGAANLGISYPIALDNNY 154 (352)
T ss_dssp GGGTTSEEEEEEECTTCHHHHHHHHH-H--HHHHHHHGGGTEEEEEEECCSSGGGGCHHHHHHHHHHHTCCSCEEECTTS
T ss_pred HHhCCCEEEEEEECCCChhHHHHHHH-H--HHHHHHhhcCCeEEEEEECCcccccCCHHHHHHHHHHcCCCccEEeCCcH
Confidence 33468999999999999999987652 2 245555543 58888887642 22222222211
Q ss_pred -HHHhcCCCCCCcEEEECCCCceecc
Q 003940 195 -VQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 195 -~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
+...+++.++|+++|+|++|+++..
T Consensus 155 ~l~~~ygV~~~Pt~~lID~~G~Iv~~ 180 (352)
T 2hyx_A 155 ATWTNYRNRYWPAEYLIDATGTVRHI 180 (352)
T ss_dssp HHHHHTTCCEESEEEEECTTSBEEEE
T ss_pred HHHHHcCCCccCEEEEEeCCCeEEEE
Confidence 1122488899999999999999875
No 180
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}
Probab=98.00 E-value=1.8e-05 Score=80.07 Aligned_cols=81 Identities=12% Similarity=0.221 Sum_probs=52.6
Q ss_pred cCCc-EEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCC-------CCccHHHHHHHH-------------
Q 003940 137 RDVP-IFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE-------ERPDVDKVYMTY------------- 194 (784)
Q Consensus 137 e~Kp-I~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~e-------e~pdi~~~y~~~------------- 194 (784)
.+|+ |+|.|+++||+.|+.+.. .+ .++.+.+.+ ++..|.|+.+ +.++..+.|.+.
T Consensus 57 ~gk~~vll~F~a~~C~~C~~~~~-~l--~~l~~~~~~~~v~vv~Vs~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~ 133 (218)
T 3u5r_E 57 KDSPALLVAFISNRCPFVVLIRE-AL--AKFAGDYAGQGLAVVAINSNDAQAFPEETLERVGAEVKAYGYGFPYLKDASQ 133 (218)
T ss_dssp TTCSEEEEEECCSSCHHHHTTHH-HH--HHHHHHHTTTTEEEEEEECSCTTTCGGGSHHHHHHHHHHHTCCSCEEECTTC
T ss_pred CCCCeEEEEEECCCCccHHHHHH-HH--HHHHHHHHhCCcEEEEEECCcccccccCCHHHHHHHHHHhCCCccEEECCcc
Confidence 5785 999999999999987654 22 245555543 3666666663 222222222111
Q ss_pred -HHHhcCCCCCCcEEEECCCCceeccc
Q 003940 195 -VQALYGGGGWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 195 -~q~~~g~~G~P~~vfl~pdg~pi~~~ 220 (784)
+...+++.++|+++++|++|++++.+
T Consensus 134 ~~~~~~~v~~~P~~~liD~~G~i~~~g 160 (218)
T 3u5r_E 134 SVAKAYGAACTPDFFLYDRERRLVYHG 160 (218)
T ss_dssp HHHHHHTCCEESEEEEECTTCBEEEEE
T ss_pred HHHHHcCCCCCCeEEEECCCCcEEEec
Confidence 11123888999999999999998764
No 181
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}
Probab=98.00 E-value=8e-06 Score=78.81 Aligned_cols=79 Identities=13% Similarity=0.050 Sum_probs=48.0
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCC-------CCccHHHHHH-H--------------
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE-------ERPDVDKVYM-T-------------- 193 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~e-------e~pdi~~~y~-~-------------- 193 (784)
.||+|+|.|+++||+.|+ +-. .++ ++.+.+.+ ++..|.|+.+ +.++..+.|. +
T Consensus 31 ~Gk~vll~F~a~wC~~C~-~~~-~l~--~l~~~~~~~~v~vv~vs~d~~~~~~~d~~~~~~~~~~~~~~~~~p~~~d~d~ 106 (171)
T 3cmi_A 31 KGKVVLIVNVASKCGFTP-QYK-ELE--ALYKRYKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDV 106 (171)
T ss_dssp TTCEEEEEEEESSSCCHH-HHH-HHH--HHHHHHGGGTEEEEEEEECSCC------------------CCCSCBBCCCBS
T ss_pred CCCEEEEEEEecCCCcch-hHH-HHH--HHHHHhccCCeEEEEEECcccCCCCCCCHHHHHHHHHhccCCCceEEeeccC
Confidence 589999999999999999 432 332 45555543 4666666542 1122112222 1
Q ss_pred -----------HHHHhcCCCCCC------cEEEECCCCceecc
Q 003940 194 -----------YVQALYGGGGWP------LSVFLSPDLKPLMG 219 (784)
Q Consensus 194 -----------~~q~~~g~~G~P------~~vfl~pdg~pi~~ 219 (784)
......|+.|+| +++++|++|+++..
T Consensus 107 ~~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~ 149 (171)
T 3cmi_A 107 NGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFLVDKKGKVYER 149 (171)
T ss_dssp SSTTBCHHHHHHHHHSCCSSSCCSCCSTTCEEEECSSSCEEEE
T ss_pred CCccchHHHHHHHhccCCcCCCCcccccceEEEECCCCCEEEE
Confidence 111124678899 99999999999875
No 182
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=97.99 E-value=4.8e-06 Score=78.91 Aligned_cols=80 Identities=14% Similarity=0.149 Sum_probs=51.7
Q ss_pred cCCcEEEEEcccCChh-hhhhhhcccCCHHHHHHHhc-----ccEEEEEcCCC---CccHHHHHHH--------------
Q 003940 137 RDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLND-----WFVSIKVDREE---RPDVDKVYMT-------------- 193 (784)
Q Consensus 137 e~KpI~l~~~~~wC~w-C~~Me~etf~d~eVa~~ln~-----~FV~VkvD~ee---~pdi~~~y~~-------------- 193 (784)
.||+|+|.|+++||+. |+.+-. .+ .++.+.+.+ ++..|-|+.+. .|+..+.|.+
T Consensus 22 ~gk~vll~f~~~~C~~~C~~~~~-~l--~~l~~~~~~~~~~~~~~vv~vs~d~~~d~~~~~~~~~~~~~~~~~~l~~~~d 98 (164)
T 2ggt_A 22 LGQWLLIYFGFTHCPDVCPEELE-KM--IQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTRE 98 (164)
T ss_dssp TTCEEEEEEECTTCSSHHHHHHH-HH--HHHHHHHHHSSSSCCEEEEEEESCTTTCCHHHHHHHHHTTCSSCEEEECCHH
T ss_pred CCCEEEEEEEeCCCCchhHHHHH-HH--HHHHHHHhhccCCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCeEEEeCCHH
Confidence 5899999999999998 998654 22 245555543 55555554432 2332222321
Q ss_pred ---HHHHhcCCCCCC---------------cEEEECCCCceecc
Q 003940 194 ---YVQALYGGGGWP---------------LSVFLSPDLKPLMG 219 (784)
Q Consensus 194 ---~~q~~~g~~G~P---------------~~vfl~pdg~pi~~ 219 (784)
.+...+|+.+.| ++++++++|+++..
T Consensus 99 ~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 142 (164)
T 2ggt_A 99 EVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDY 142 (164)
T ss_dssp HHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEE
T ss_pred HHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEE
Confidence 111224777888 89999999999875
No 183
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=97.95 E-value=8.9e-06 Score=97.26 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=65.2
Q ss_pred HHHHH-HHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAFA-EARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal~-~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
.+.+. ...+.+|||+|.|+++||+.|+.|... + .++++.+..++..++||.++.+++.+.| |+.|+|+
T Consensus 664 ~~~~~~~~~~~~~~v~v~F~a~wC~~C~~~~p~-~--~~la~~~~~~~~~~~vd~~~~~~~~~~~--------~v~~~Pt 732 (780)
T 3apo_A 664 PQTFNEKVLQGKTHWVVDFYAPWSGPSQNFAPE-F--ELLARMIKGKVRAGKVDCQAYPQTCQKA--------GIKAYPS 732 (780)
T ss_dssp HHHHHHHTTTCSSCEEEEEECTTCHHHHHHHHH-H--HHHHHHHTTTCEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHH-H--HHHHHHhcCCceEEEEECCCCHHHHHhc--------CCCcCCE
Confidence 45554 456789999999999999999998763 3 5777777668999999999988877665 8899999
Q ss_pred EEEECCCCceec
Q 003940 207 SVFLSPDLKPLM 218 (784)
Q Consensus 207 ~vfl~pdg~pi~ 218 (784)
++|+ ++|+.+.
T Consensus 733 ~~~~-~~g~~~~ 743 (780)
T 3apo_A 733 VKLY-QYERAKK 743 (780)
T ss_dssp EEEE-EEETTTT
T ss_pred EEEE-cCCCccc
Confidence 9999 8888764
No 184
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Probab=97.95 E-value=1.9e-05 Score=77.77 Aligned_cols=80 Identities=13% Similarity=0.081 Sum_probs=51.4
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCC-------CccHHHHHH-HHH------------
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-------RPDVDKVYM-TYV------------ 195 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee-------~pdi~~~y~-~~~------------ 195 (784)
.||+|+|.|+++||+.|+.+-. .+ .++.+.+.+ ++..|.|+.++ .++..+.|. +..
T Consensus 47 ~Gk~vll~F~atwC~~C~~~~~-~l--~~l~~~~~~~~v~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~D~ 123 (190)
T 2vup_A 47 KGSPLLIYNVASKCGYTKGGYE-TA--TTLYNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINV 123 (190)
T ss_dssp TTSCEEEEEECSSSTTHHHHHH-HH--HHHHHHHGGGTCEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCBS
T ss_pred CCCEEEEEEecCCCCccHHHHH-HH--HHHHHHHhcCCeEEEEEEcCccCCCCCCCHHHHHHHHHHhcCCCeEEEeeccc
Confidence 5899999999999999977543 22 244444543 47777776552 222223333 110
Q ss_pred -------------HHhcCCCCCC------cEEEECCCCceecc
Q 003940 196 -------------QALYGGGGWP------LSVFLSPDLKPLMG 219 (784)
Q Consensus 196 -------------q~~~g~~G~P------~~vfl~pdg~pi~~ 219 (784)
....++.|.| ++++++++|+++..
T Consensus 124 ~~~~~~~~~~~l~~~~~~v~~~P~i~~~~~~~lid~~G~i~~~ 166 (190)
T 2vup_A 124 NGENAHPLYEYMKKTKPGILKTKAIKWNFTSFLIDRDGVPVER 166 (190)
T ss_dssp SSTTBCHHHHHHHHHSCCGGGCCSCCSTTCEEEECTTSCEEEE
T ss_pred CcccccHHHHHHHhhcCCcCCCccccccceEEEECCCCcEEEE
Confidence 0112667888 99999999999875
No 185
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=97.94 E-value=5.7e-06 Score=89.52 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=54.0
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc--ccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECC
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSP 212 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~--~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~p 212 (784)
..++|+++|.|+++||+.|+.|... + .++++.+.. +++.++||.+..+. +.| ++.|+|+++|+..
T Consensus 264 ~~~~k~~lv~f~a~wC~~C~~~~p~-~--~~la~~~~~~~~v~~~~vd~~~~~~--~~~--------~v~~~Pt~~~~~~ 330 (361)
T 3uem_A 264 FDEKKNVFVEFYAPWCGHCKQLAPI-W--DKLGETYKDHENIVIAKMDSTANEV--EAV--------KVHSFPTLKFFPA 330 (361)
T ss_dssp TCTTCEEEEEEECTTCHHHHHHHHH-H--HHHHHHTTTCSSEEEEEEETTTCBC--SSC--------CCCSSSEEEEECS
T ss_pred ccCCCcEEEEEecCcCHhHHHHHHH-H--HHHHHHhccCCcEEEEEEECCccch--hhc--------CCcccCeEEEEEC
Confidence 4689999999999999999999863 3 366777765 49999999987762 223 8899999999976
Q ss_pred C-Cc
Q 003940 213 D-LK 215 (784)
Q Consensus 213 d-g~ 215 (784)
+ |+
T Consensus 331 ~~~~ 334 (361)
T 3uem_A 331 SADR 334 (361)
T ss_dssp SSSC
T ss_pred CCCc
Confidence 5 44
No 186
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=97.93 E-value=2.3e-06 Score=87.40 Aligned_cols=68 Identities=12% Similarity=0.105 Sum_probs=51.5
Q ss_pred CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi 217 (784)
+|+|+|.|+++||+.|+.|.. .| .++++.+ .++..++||.+ .|++...| ++.++||++|+. +|+++
T Consensus 120 ~k~vvV~F~a~wC~~C~~l~p-~l--~~la~~~-~~v~f~~vd~~-~~~l~~~~--------~i~~~PTl~~~~-~G~~v 185 (217)
T 2trc_P 120 VTTIVVNIYEDGVRGCDALNS-SL--ECLAAEY-PMVKFCKIRAS-NTGAGDRF--------SSDVLPTLLVYK-GGELI 185 (217)
T ss_dssp TCEEEEEEECTTSTTHHHHHH-HH--HHHHTTC-TTSEEEEEEHH-HHTCSTTS--------CGGGCSEEEEEE-TTEEE
T ss_pred CcEEEEEEECCCCccHHHHHH-HH--HHHHHHC-CCeEEEEEECC-cHHHHHHC--------CCCCCCEEEEEE-CCEEE
Confidence 599999999999999999975 23 2344433 25788899887 56555444 788999999994 89887
Q ss_pred cc
Q 003940 218 MG 219 (784)
Q Consensus 218 ~~ 219 (784)
..
T Consensus 186 ~~ 187 (217)
T 2trc_P 186 SN 187 (217)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 187
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=97.93 E-value=9.9e-06 Score=96.86 Aligned_cols=80 Identities=11% Similarity=0.089 Sum_probs=61.0
Q ss_pred chHHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCC
Q 003940 126 WGEEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 126 ~~~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P 205 (784)
-..+.+..+-+++++++|.|+++||+.|+.|..+ | .++++.+...+..++||.++.+++.+.| |+.|+|
T Consensus 121 l~~~~f~~~i~~~~~~lv~Fya~wC~~C~~~~p~-~--~~~a~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~P 189 (780)
T 3apo_A 121 LERREFDAAVNSGELWFVNFYSPGSSHSHDLAPT-W--REFAKEVDGLLRIGAVNCGDDRMLCRMK--------GVNSYP 189 (780)
T ss_dssp CCHHHHHHHHTSSSCEEEEEECSSCHHHHHHHHH-H--HHHHHHTTTTSEEEEEETTTCSSCC----------------C
T ss_pred echHhHHhhhcCCCcEEEEEeCCCCcchhHhhHH-H--HHHHHHhcCceEEEEEeCCCcHHHHHHc--------CCceee
Confidence 3467788888999999999999999999999874 4 5788888777999999999999888776 788999
Q ss_pred cEEEECCCCcee
Q 003940 206 LSVFLSPDLKPL 217 (784)
Q Consensus 206 ~~vfl~pdg~pi 217 (784)
+.+|+ .+|+++
T Consensus 190 t~~~~-~~g~~~ 200 (780)
T 3apo_A 190 SLFIF-RSGMAA 200 (780)
T ss_dssp EEEEE-CTTSCC
T ss_pred eEEEE-eCCcEe
Confidence 99888 667753
No 188
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Probab=97.90 E-value=2.9e-05 Score=73.88 Aligned_cols=80 Identities=8% Similarity=0.039 Sum_probs=50.2
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCC-------CccHHHHHHH-HH------------
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-------RPDVDKVYMT-YV------------ 195 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee-------~pdi~~~y~~-~~------------ 195 (784)
.||+|+|.|+++||+.|+.+-. .+ .++.+.+.+ ++..|.|+.+. .++..+.|.+ ..
T Consensus 31 ~gk~vll~f~a~~C~~C~~~~~-~l--~~l~~~~~~~~~~vv~vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 107 (170)
T 2p5q_A 31 KGKVLLIVNVASKCGMTNSNYA-EM--NQLYEKYKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDV 107 (170)
T ss_dssp TTSEEEEEEECSSSTTHHHHHH-HH--HHHHHHHGGGTEEEEEEECCTTTTCCCSCHHHHHHHHHHHTCCCSCBBCCCBS
T ss_pred CCCEEEEEEEeccCCccHHHHH-HH--HHHHHHhccCCEEEEEEECCCCCCCCCCCHHHHHHHHHHhcCCCceeEeeecc
Confidence 5899999999999999987654 22 244554543 46667776542 2222222322 10
Q ss_pred ---------HH----hcCC--CCCC---cEEEECCCCceecc
Q 003940 196 ---------QA----LYGG--GGWP---LSVFLSPDLKPLMG 219 (784)
Q Consensus 196 ---------q~----~~g~--~G~P---~~vfl~pdg~pi~~ 219 (784)
.. ..|+ .++| ++++++++|+++..
T Consensus 108 ~~~~~~~~~~~l~~~~~~~~~~~~p~~~~~~lid~~G~i~~~ 149 (170)
T 2p5q_A 108 NGENASPLYRFLKLGKWGIFGDDIQWNFAKFLVNKDGQVVDR 149 (170)
T ss_dssp SSTTBCHHHHHHHTHHHHTTCSCCCSTTCEEEECTTSCEEEE
T ss_pred CCCchHHHHHHHHhcCCCccCCcccccccEEEECCCCCEEEe
Confidence 00 0133 5678 99999999999875
No 189
>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A
Probab=97.89 E-value=2e-05 Score=73.50 Aligned_cols=77 Identities=6% Similarity=0.008 Sum_probs=61.1
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCC--CC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG--WP 205 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G--~P 205 (784)
++-+++.-+.++||+|+|+++ |..|+.|.. +|+ ++|+.+...+..++||.++.|++.+.| |+.+ +|
T Consensus 13 ~~~f~~~~~~~~pv~v~f~a~-~~~c~~~~p-~l~--~~A~~~~gk~~f~~vd~d~~~~~a~~~--------gi~~~~iP 80 (133)
T 2djk_A 13 PETYSDYMSAGIPLAYIFAET-AEERKELSD-KLK--PIAEAQRGVINFGTIDAKAFGAHAGNL--------NLKTDKFP 80 (133)
T ss_dssp HHHHHHHHHTTSCEEEEECSC-SSSHHHHHH-HHH--HHHHSSTTTSEEEEECTTTTGGGTTTT--------TCCSSSSS
T ss_pred hHHHHHHhcCCCCEEEEEecC-hhhHHHHHH-HHH--HHHHHhCCeEEEEEEchHHhHHHHHHc--------CCCcccCC
Confidence 344444456789999999999 899998764 554 677777667999999999999887666 8888 99
Q ss_pred cEEEECC-CCce
Q 003940 206 LSVFLSP-DLKP 216 (784)
Q Consensus 206 ~~vfl~p-dg~p 216 (784)
+.+++.. +|+.
T Consensus 81 tl~i~~~~~g~~ 92 (133)
T 2djk_A 81 AFAIQEVAKNQK 92 (133)
T ss_dssp EEEEECTTTCCB
T ss_pred EEEEEecCcCcc
Confidence 9999984 6766
No 190
>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}
Probab=97.86 E-value=6.1e-06 Score=76.31 Aligned_cols=67 Identities=12% Similarity=0.021 Sum_probs=51.1
Q ss_pred CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi 217 (784)
++||+|+|+++||..|+.|+. .|+ ++++... +...+|||.++.+ +.| ++.+.||.+++ .+|+++
T Consensus 23 ~~~vvv~F~a~wc~~C~~~~p-~l~--~la~~~~-~v~f~kvd~d~~~---~~~--------~v~~~PT~~~f-k~G~~v 86 (118)
T 3evi_A 23 DVWVIIHLYRSSIPMCLLVNQ-HLS--LLARKFP-ETKFVKAIVNSCI---QHY--------HDNCLPTIFVY-KNGQIE 86 (118)
T ss_dssp TCEEEEEEECTTSHHHHHHHH-HHH--HHHHHCT-TSEEEEEEGGGTS---TTC--------CGGGCSEEEEE-ETTEEE
T ss_pred CCeEEEEEeCCCChHHHHHHH-HHH--HHHHHCC-CCEEEEEEhHHhH---HHC--------CCCCCCEEEEE-ECCEEE
Confidence 459999999999999999985 343 5555543 5777899998752 222 78899999988 589888
Q ss_pred ccc
Q 003940 218 MGG 220 (784)
Q Consensus 218 ~~~ 220 (784)
...
T Consensus 87 ~~~ 89 (118)
T 3evi_A 87 AKF 89 (118)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
No 191
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=97.85 E-value=0.00051 Score=76.55 Aligned_cols=275 Identities=11% Similarity=0.086 Sum_probs=154.0
Q ss_pred HHH-HHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeecccCCCccccccccccCCceEEechHHHHHHh
Q 003940 379 LYD-QGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDIL 457 (784)
Q Consensus 379 LyD-NA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~L 457 (784)
||+ .+-++.+|+..|++++++.|++.|.++++.+.+.+.+..-+|+. |..|..| ....+++.+
T Consensus 73 lY~G~~Gia~~l~~l~~~t~d~~yl~~a~~~l~~~~~~l~~~~~~~~~--------------G~aG~l~--~l~~ly~~~ 136 (411)
T 3e6u_A 73 GYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLC--------------GDAGPLA--VAAVLYHKM 136 (411)
T ss_dssp SSSSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCCSCCCCTTT--------------STHHHHH--HHHHHHHHT
T ss_pred eeeChHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcccCCcccc--------------CcHHHHH--HHHHHHHHh
Confidence 455 77889999999999999999999999999998876543333433 2334433 445566666
Q ss_pred hhhH---HHHHHHhcc---cCCCCcCCCCCCCCCCCCCCcc-eeeccCCchHHHHhcCC---CHHHHHHHHHHHHH---H
Q 003940 458 GEHA---ILFKEHYYL---KPTGNCDLSRMSDPHNEFKGKN-VLIELNDSSASASKLGM---PLEKYLNILGECRR---K 524 (784)
Q Consensus 458 g~~~---~l~~~~f~l---~~~Gn~e~~~~~dp~g~f~g~n-vL~~~~~~~~~a~~~g~---~~~~l~~~l~~~r~---k 524 (784)
++.. +.+.+.-.+ ..+.+.| -..|.. ++... -.+.+..+- ....+.+..+.+.+ .
T Consensus 137 g~~~~a~~~~~~l~~~~~~~~~~~~d---------ll~G~AG~l~aL---l~L~~~~~~~~~~~~~i~~i~~~ii~~g~~ 204 (411)
T 3e6u_A 137 NNEKQAEDCITRLIHLNKIDPHAPNE---------MLYGRIGYIYAL---LFVNKNFGVEKIPQSHIQQICETILTSGEN 204 (411)
T ss_dssp TCHHHHHHHHHHHHGGGGGCTTCCSS---------TTTSHHHHHHHH---HHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcccccCChh---------hhcCcHHHHHHH---HHHHHHcCCccchHHHHHHHHHHHHHHHHH
Confidence 6431 222222222 2211111 012321 11000 011111221 11112222222211 1
Q ss_pred HHhhhcC-CCCCC-C--Cchhhhch---HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhcc
Q 003940 525 LFDVRSK-RPRPH-L--DDKVIVSW---NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLY 597 (784)
Q Consensus 525 L~~~R~~-R~~P~-l--DdKiitsW---Nal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~ 597 (784)
+...+.. -..|. . .++..++| .+=++.+|+++++.+++ +++++.++++.+++.+...
T Consensus 205 ~~~~~~~~~~~pl~~~w~~~~~~G~aHG~aGI~~~Ll~~~~~~~~----------------~~~~~~i~~~l~~l~~~~~ 268 (411)
T 3e6u_A 205 LARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQ----------------GKLHSLVKPSVDYVCQLKF 268 (411)
T ss_dssp HHHHTTTTTTCSCCCCBTTBCBCSTTTSHHHHHHHHTCGGGCCCH----------------HHHHHTHHHHHHHHHHTCC
T ss_pred HHHhccccCCCCcceeecCccCCcccccHHHHHHHHHHHHhhcCh----------------HHHHHHHHHHHHHHHHhhc
Confidence 1111110 01221 0 11212221 22236678888777776 7899999999999998765
Q ss_pred ccCCCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccc
Q 003940 598 DEQTHRLQHSFRNGPSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLR 677 (784)
Q Consensus 598 d~~~G~l~~~~~dg~~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R 677 (784)
. +|.+.....++......+..+-+=.+.+++.++++++|++|++.|++..+.+.+. | ...
T Consensus 269 ~--~g~wp~~~~~~~~~~~~wChG~~Gi~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~------g-~~~----------- 328 (411)
T 3e6u_A 269 P--SGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQY------G-LLK----------- 328 (411)
T ss_dssp T--TSCCCSBTTCCCCCCCSSSSSHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH------C-SBT-----------
T ss_pred c--CCCCCCCCCcccCccccccCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc------C-ccC-----------
Confidence 3 2432211112222234566677778889999999999999999999888766442 1 000
Q ss_pred cccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHH
Q 003940 678 VKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFE 724 (784)
Q Consensus 678 ~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~ 724 (784)
.+...=-|.+=.+..|+++++.+++ +.|+++|.++++...
T Consensus 329 ----~~~~lChG~aG~~~~ll~~~~~t~~---~~~~~~A~~~~~~~~ 368 (411)
T 3e6u_A 329 ----KGYGLCHGSAGNAYAFLTLYNLTQD---MKYLYRACKFAEWCL 368 (411)
T ss_dssp ----TCSCSTTSHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHT
T ss_pred ----CCCceecChHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHH
Confidence 0112334566677789999999986 889999988777643
No 192
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A
Probab=97.81 E-value=4.8e-05 Score=74.14 Aligned_cols=80 Identities=8% Similarity=0.068 Sum_probs=49.9
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCC-------CccHHHHHHHH-HHH---------h
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-------RPDVDKVYMTY-VQA---------L 198 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee-------~pdi~~~y~~~-~q~---------~ 198 (784)
.||+|+|.|+++||+.|+.+-. .+ .++.+.+.+ ++..|-|..+. .++..+.|.+. ... .
T Consensus 37 ~Gk~vlv~F~atwC~~C~~~~p-~l--~~l~~~~~~~~~~vi~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~d~ 113 (180)
T 3kij_A 37 KGKVSLVVNVASDCQLTDRNYL-GL--KELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKI 113 (180)
T ss_dssp TTSEEEEEEECSSSTTHHHHHH-HH--HHHHHHHTTTSEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCCC
T ss_pred CCCEEEEEEEecCCCCcHHHHH-HH--HHHHHHhccCCeEEEEEECCccccCCCCCHHHHHHHHHHhcCCCCceeeeeec
Confidence 6899999999999999998654 22 245555544 46666665432 23222223222 100 0
Q ss_pred c-------------CCCCCCc----EEEECCCCceecc
Q 003940 199 Y-------------GGGGWPL----SVFLSPDLKPLMG 219 (784)
Q Consensus 199 ~-------------g~~G~P~----~vfl~pdg~pi~~ 219 (784)
. ..++.|+ +++++++|+++..
T Consensus 114 ~~~~~~~~~~~~~~~~~~~p~~~~~~~lid~~G~i~~~ 151 (180)
T 3kij_A 114 LGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKF 151 (180)
T ss_dssp SSTTCCHHHHHHHHHHTCCCSSTTCEEEECTTSCEEEE
T ss_pred cCccccHHHHHHHhcCCCCccccceEEEECCCCCEEEE
Confidence 0 1235788 9999999999875
No 193
>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=97.80 E-value=3.7e-05 Score=76.04 Aligned_cols=80 Identities=8% Similarity=-0.055 Sum_probs=50.9
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHH------------------HH
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY------------------VQ 196 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~------------------~q 196 (784)
.||+|+|.|+ ++||+.|+.+-.. ++ ++.+.+.+ ++..|.|+.+. ++..+.|.+. +.
T Consensus 44 ~gk~vvl~F~~a~~C~~C~~~~~~-l~--~l~~~~~~~~v~vv~Vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 119 (195)
T 2bmx_A 44 PGKWRVVFFWPKDFTFVCPTEIAA-FS--KLNDEFEDRDAQILGVSIDS-EFAHFQWRAQHNDLKTLPFPMLSDIKRELS 119 (195)
T ss_dssp TTCEEEEEECSCTTSCCCHHHHHH-HH--HTHHHHHTTTEEEEEEESSC-HHHHHHHHHHCTTGGGCCSCEEECTTSHHH
T ss_pred CCCcEEEEEEcCCCCCCcHHHHHH-HH--HHHHHHHHCCCEEEEEECCC-HHHHHHHHHHhccccCCceeEEeCCchHHH
Confidence 4899999999 9999999976542 22 33444443 46666665543 2222222111 11
Q ss_pred HhcCCC-----CCCcEEEECCCCceeccc
Q 003940 197 ALYGGG-----GWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 197 ~~~g~~-----G~P~~vfl~pdg~pi~~~ 220 (784)
..+++. ++|++++++++|++++..
T Consensus 120 ~~~~v~~~~g~~~P~~~lid~~G~i~~~~ 148 (195)
T 2bmx_A 120 QAAGVLNADGVADRVTFIVDPNNEIQFVS 148 (195)
T ss_dssp HHHTCBCTTSSBCEEEEEECTTSBEEEEE
T ss_pred HHhCCcccCCCccceEEEEcCCCeEEEEE
Confidence 123666 899999999999998763
No 194
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A
Probab=97.79 E-value=8.3e-05 Score=70.62 Aligned_cols=43 Identities=7% Similarity=-0.061 Sum_probs=29.8
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCC
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE 182 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~e 182 (784)
.||+|+|.|+++||+.|+.+-. .++ ++.+.+.+ ++..|.|+.+
T Consensus 30 ~gk~vlv~f~a~~C~~C~~~~~-~l~--~l~~~~~~~~~~vv~v~~d 73 (169)
T 2v1m_A 30 RGHVCLIVNVACKCGATDKNYR-QLQ--EMHTRLVGKGLRILAFPCN 73 (169)
T ss_dssp TTSEEEEEEECSSSTTHHHHHH-HHH--HHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEeeccCCchHHHHH-HHH--HHHHHhhcCCeEEEEEECC
Confidence 5899999999999999987543 222 34444443 4666666654
No 195
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Probab=97.75 E-value=1.9e-05 Score=77.63 Aligned_cols=42 Identities=10% Similarity=0.107 Sum_probs=29.1
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcC
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDR 181 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ 181 (784)
.||+|+|.|+++||+.|+.+-. .+ .++.+.+.+ ++..|-|..
T Consensus 45 ~Gk~vlv~F~atwC~~C~~~~p-~l--~~l~~~~~~~~~~vi~is~ 87 (187)
T 3dwv_A 45 KGSPLLIYNVASKCGYTKGGYE-TA--TTLYNKYKSQGFTVLAFPS 87 (187)
T ss_dssp TTSCEEEEEECCBCSCCTTHHH-HH--HHHHHHHGGGTCEEEEEEB
T ss_pred CCCEEEEEEecCCCCCcHHHHH-HH--HHHHHHhhhCCeEEEEEEC
Confidence 6899999999999999998653 22 244444443 466666643
No 196
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=97.74 E-value=5.5e-05 Score=74.03 Aligned_cols=79 Identities=9% Similarity=-0.071 Sum_probs=50.8
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHH------------------HH
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTY------------------VQ 196 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~------------------~q 196 (784)
.||+++|.|+ ++||+.|+.+-. .++ ++.+.+.+ ++..|.|+.+. ++..+.|.+. +.
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~-~l~--~~~~~~~~~~v~vv~vs~d~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 105 (187)
T 1we0_A 30 KGKWSIVVFYPADFSFVCPTELE-DVQ--KEYAELKKLGVEVYSVSTDT-HFVHKAWHENSPAVGSIEYIMIGDPSQTIS 105 (187)
T ss_dssp SSSEEEEEECSCTTCSSCTHHHH-HHH--HHHHHHHHTTEEEEEEESSC-HHHHHHHHHSCHHHHTCCSEEEECTTCHHH
T ss_pred CCCCEEEEEECCCCCcchHHHHH-HHH--HHHHHHHHcCCEEEEEECCC-HHHHHHHHHHhccccCCCceEEECCchHHH
Confidence 5899999999 999999997654 232 34444443 46666666553 2212222110 11
Q ss_pred HhcCCC------CCCcEEEECCCCceecc
Q 003940 197 ALYGGG------GWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 197 ~~~g~~------G~P~~vfl~pdg~pi~~ 219 (784)
..+|+. ++|+++++|++|+++..
T Consensus 106 ~~~~v~~~~~g~~~P~~~lid~~G~i~~~ 134 (187)
T 1we0_A 106 RQFDVLNEETGLADRGTFIIDPDGVIQAI 134 (187)
T ss_dssp HHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHhCCCcCCCCceeeEEEEECCCCeEEEE
Confidence 123665 89999999999999876
No 197
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Probab=97.73 E-value=6.5e-05 Score=71.09 Aligned_cols=97 Identities=11% Similarity=0.043 Sum_probs=55.2
Q ss_pred cCC-cEEEEEc-ccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHH----------------HHHH
Q 003940 137 RDV-PIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT----------------YVQA 197 (784)
Q Consensus 137 e~K-pI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~----------------~~q~ 197 (784)
.|| +|+|.|+ ++||+.|+.+-.. ++ ++.+.+. +++..|-|+.+. ++..+.|.+ .+..
T Consensus 34 ~gk~~vvl~F~~a~~C~~C~~~~~~-l~--~~~~~~~~~~~~vv~is~d~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 109 (160)
T 1xvw_A 34 RGAKNVLLVFFPLAFTGICQGELDQ-LR--DHLPEFENDDSAALAISVGP-PPTHKIWATQSGFTFPLLSDFWPHGAVSQ 109 (160)
T ss_dssp TTTCEEEEEECSCTTSSHHHHHHHH-HH--HTGGGTSSSSEEEEEEESCC-HHHHHHHHHHHTCCSCEEECTTTTTHHHH
T ss_pred cCCCCEEEEEECCCCCCchHHHHHH-HH--HHHHHHHHCCcEEEEEeCCC-HHHHHHHHHhcCCCceEEecCCcChHHHH
Confidence 466 9999997 9999999976531 11 2222232 245555555542 221111210 0111
Q ss_pred hcCCC----CCC--cEEEECCCCceeccc-cccCCCCCCCcchHHHHHHHHH
Q 003940 198 LYGGG----GWP--LSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 198 ~~g~~----G~P--~~vfl~pdg~pi~~~-tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
.+|+. |+| ++++++++|++++.. +..+.+ +.+.++++.+.
T Consensus 110 ~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~-----~~~~~l~~~l~ 156 (160)
T 1xvw_A 110 AYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEV-----RDQRLWTDALA 156 (160)
T ss_dssp HTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCC-----CCHHHHHHHHH
T ss_pred HcCCccccCCCeeeeEEEECCCCeEEEEEecCCCCC-----CCHHHHHHHHH
Confidence 23665 899 999999999998763 333322 34556665554
No 198
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=97.72 E-value=1.3e-05 Score=67.92 Aligned_cols=61 Identities=16% Similarity=0.108 Sum_probs=42.4
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhc---ccEEEEEcCC-CCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLND---WFVSIKVDRE-ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~---~FV~VkvD~e-e~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi 217 (784)
++.|+++||++|+.|.. .+.+++++ .|..++||.+ +.+++.+.| |+.+.|++++ +|+.+
T Consensus 4 ~~~f~~~~C~~C~~~~~------~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--------gv~~vPt~~i---~g~~~ 66 (80)
T 2k8s_A 4 KAIFYHAGCPVCVSAEQ------AVANAIDPSKYTVEIVHLGTDKARIAEAEKA--------GVKSVPALVI---DGAAF 66 (80)
T ss_dssp EEEEEECSCHHHHHHHH------HHHHHSCTTTEEEEEEETTTCSSTHHHHHHH--------TCCEEEEEEE---TTEEE
T ss_pred eEEEeCCCCCchHHHHH------HHHHHHHhcCCeEEEEEecCChhhHHHHHHc--------CCCcCCEEEE---CCEEE
Confidence 45688999999999985 23344443 4677777765 455554444 8889999877 88876
Q ss_pred cc
Q 003940 218 MG 219 (784)
Q Consensus 218 ~~ 219 (784)
+.
T Consensus 67 ~~ 68 (80)
T 2k8s_A 67 HI 68 (80)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 199
>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A
Probab=97.67 E-value=0.00016 Score=72.76 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=49.7
Q ss_pred hcCCcEEEEEcccC--ChhhhhhhhcccCCHHHHHHH--hcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEEC
Q 003940 136 KRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLL--NDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLS 211 (784)
Q Consensus 136 ~e~KpI~l~~~~~w--C~wC~~Me~etf~d~eVa~~l--n~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~ 211 (784)
+..+||+|.+++++ |+||..+..-.=+=.++++.+ ......++||.++.+++.+.| |+.|+||.+|+.
T Consensus 18 ~~~~~v~v~~~~~~~~~~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~l~~~~--------~v~~~Ptl~~~~ 89 (229)
T 2ywm_A 18 EFKEPVSIKLFSQAIGCESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKEETEKY--------GVDRVPTIVIEG 89 (229)
T ss_dssp HCCSCEEEEEECCCTTCGGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHHHHHHT--------TCCBSSEEEEES
T ss_pred hccCCeEEEEEccCCCCcccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHHHHHHc--------CCCcCcEEEEEC
Confidence 56789888888554 777776654221223444444 557888999999999988777 899999999996
No 200
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=97.67 E-value=4.2e-05 Score=69.79 Aligned_cols=66 Identities=20% Similarity=0.352 Sum_probs=47.3
Q ss_pred CcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003940 139 VPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (784)
Q Consensus 139 KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~ 218 (784)
.++++.|+++||++|+.++. .++ ++++.. .+-..+||+++.|++...| |+. +|+.+++ -+|+++.
T Consensus 29 m~~vv~y~~~~C~~C~~a~~-~L~--~l~~e~--~i~~~~vDId~d~~l~~~y--------gv~-VP~l~~~-~dG~~v~ 93 (107)
T 2fgx_A 29 PRKLVVYGREGCHLCEEMIA-SLR--VLQKKS--WFELEVINIDGNEHLTRLY--------NDR-VPVLFAV-NEDKELC 93 (107)
T ss_dssp CCCEEEEECSSCHHHHHHHH-HHH--HHHHHS--CCCCEEEETTTCHHHHHHS--------TTS-CSEEEET-TTTEEEE
T ss_pred ccEEEEEeCCCChhHHHHHH-HHH--HHHHhc--CCeEEEEECCCCHHHHHHh--------CCC-CceEEEE-ECCEEEE
Confidence 36689999999999999875 222 333323 3666788998888877665 665 9998766 4688874
Q ss_pred c
Q 003940 219 G 219 (784)
Q Consensus 219 ~ 219 (784)
.
T Consensus 94 ~ 94 (107)
T 2fgx_A 94 H 94 (107)
T ss_dssp C
T ss_pred e
Confidence 3
No 201
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein disulfide isomerase, PIPE, dorsal-ventral patterning, chaperone, WIND mutants; 1.75A {Drosophila melanogaster} SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Probab=97.66 E-value=7.4e-05 Score=77.91 Aligned_cols=68 Identities=10% Similarity=0.106 Sum_probs=52.7
Q ss_pred HHHHhhcCCcEEEEEc--ccCChhhhhhhhcccCCHHHHHHHh---cccEEEEEcCCC-----CccHHHHHHHHHHHhcC
Q 003940 131 FAEARKRDVPIFLSIG--YSTCHWCHVMEVESFEDEGVAKLLN---DWFVSIKVDREE-----RPDVDKVYMTYVQALYG 200 (784)
Q Consensus 131 l~~Ak~e~KpI~l~~~--~~wC~wC~~Me~etf~d~eVa~~ln---~~FV~VkvD~ee-----~pdi~~~y~~~~q~~~g 200 (784)
|+..-..+++|||+|+ |+||+ |.. +|+ ++++.+. .+++.++||.++ .+++.+.| +
T Consensus 26 F~~vi~~~~~vlV~Fy~~ApWCg----l~P-~~e--~lA~~~~~~~~~v~~akVD~d~~g~~~n~~la~~~--------~ 90 (248)
T 2c0g_A 26 FEKTVERFPYSVVKFDIASPYGE----KHE-AFT--AFSKSAHKATKDLLIATVGVKDYGELENKALGDRY--------K 90 (248)
T ss_dssp HHHHHTTSSEEEEEEEESSCCSH----HHH-HHH--HHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHT--------T
T ss_pred HHHHHhcCCCEEEEEECCCCCCc----cHH-HHH--HHHHHHhccCCCeEEEEEECCcccccccHHHHHHh--------C
Confidence 3334467899999999 99998 543 443 6777773 468999999887 77877766 8
Q ss_pred CC--CCCcEEEECCCCc
Q 003940 201 GG--GWPLSVFLSPDLK 215 (784)
Q Consensus 201 ~~--G~P~~vfl~pdg~ 215 (784)
+. |+||++|+. |+
T Consensus 91 V~~~~~PTl~~F~--G~ 105 (248)
T 2c0g_A 91 VDDKNFPSIFLFK--GN 105 (248)
T ss_dssp CCTTSCCEEEEES--SS
T ss_pred CCcCCCCeEEEEe--CC
Confidence 99 999999996 76
No 202
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=97.64 E-value=0.00012 Score=70.06 Aligned_cols=99 Identities=13% Similarity=0.070 Sum_probs=54.4
Q ss_pred cCCcEEEEEcccC-ChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccH---------------HH-HHHHHHHHhc
Q 003940 137 RDVPIFLSIGYST-CHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDV---------------DK-VYMTYVQALY 199 (784)
Q Consensus 137 e~KpI~l~~~~~w-C~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi---------------~~-~y~~~~q~~~ 199 (784)
.||+++|.|+++| |+.|+.+-. .++ ++.+.+ +++..|.|+.+....+ .. .-....+. +
T Consensus 43 ~gk~~vl~F~~~~~C~~C~~~~~-~l~--~l~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~ 117 (167)
T 2jsy_A 43 KGKVTIISVIPSIDTGVCDAQTR-RFN--EEAAKL-GDVNVYTISADLPFAQARWCGANGIDKVETLSDHRDMSFGEA-F 117 (167)
T ss_dssp TTSCEEEEECSCSTTSHHHHTHH-HHH--HHHHHH-SSCEEEEEECSSGGGTSCCGGGSSCTTEEEEEGGGTCHHHHH-T
T ss_pred CCCeEEEEEecCCCCCchHHHHH-HHH--HHHHHc-CCCEEEEEECCCHHHHHHHHHhcCCCCceEeeCCchhHHHHH-h
Confidence 5899999999999 999998653 222 333334 4555555544321000 00 00011111 2
Q ss_pred CCCC------CCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHH
Q 003940 200 GGGG------WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (784)
Q Consensus 200 g~~G------~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (784)
|+.+ .|+++++|++|++++.....++. ..+.+.++++.|.+
T Consensus 118 ~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~---~~~~~~~l~~~l~~ 164 (167)
T 2jsy_A 118 GVYIKELRLLARSVFVLDENGKVVYAEYVSEAT---NHPNYEKPIEAAKA 164 (167)
T ss_dssp TCBBTTTCSBCCEEEEECTTSCEEEEEECSBTT---SCCCSHHHHHHHHH
T ss_pred CCccccCCceeeEEEEEcCCCcEEEEEecCCcC---CCCCHHHHHHHHHH
Confidence 5443 49999999999998763211111 12345556655554
No 203
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=97.63 E-value=5.1e-05 Score=72.35 Aligned_cols=79 Identities=16% Similarity=0.249 Sum_probs=48.4
Q ss_pred cCCcEEEEEcccCChh-hhhhhhcccCCHHHHHHHhc----ccEEEEEcCCC---CccHHHHHHH---------------
Q 003940 137 RDVPIFLSIGYSTCHW-CHVMEVESFEDEGVAKLLND----WFVSIKVDREE---RPDVDKVYMT--------------- 193 (784)
Q Consensus 137 e~KpI~l~~~~~wC~w-C~~Me~etf~d~eVa~~ln~----~FV~VkvD~ee---~pdi~~~y~~--------------- 193 (784)
.||+|+|.|+++||+. |+.+-. .++ ++.+.+.+ ++..|.|+.+. .|+..+.|.+
T Consensus 34 ~gk~vll~f~~~~C~~~C~~~~~-~l~--~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~~~~~~~l~d~~~~ 110 (172)
T 2k6v_A 34 QDKVVLLFFGFTRCPDVCPTTLL-ALK--RAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPSFLGLSGSPEA 110 (172)
T ss_dssp TTSEEEEEEECTTCSSHHHHHHH-HHH--HHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHHCTTEEEECCCHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHH-HHH--HHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHhCCCcEEEeCCHHH
Confidence 5899999999999997 998654 121 23333332 46666666543 2333333322
Q ss_pred ---HHHHh--------------cCCCCCCcEEEECCCCceecc
Q 003940 194 ---YVQAL--------------YGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 194 ---~~q~~--------------~g~~G~P~~vfl~pdg~pi~~ 219 (784)
..+.+ +++.++|++++++ +|+++..
T Consensus 111 ~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~ 152 (172)
T 2k6v_A 111 VREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLL 152 (172)
T ss_dssp HHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEE
T ss_pred HHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEE
Confidence 11221 1134789999999 9998865
No 204
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=97.62 E-value=0.00068 Score=76.12 Aligned_cols=142 Identities=15% Similarity=0.165 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchH
Q 003940 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDY 622 (784)
Q Consensus 545 WNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~--~~~~~leDy 622 (784)
-.+.++.|||.|++++++. +..| ..++|+.|+++.+|..++- |.+.....++.. ...++.+
T Consensus 151 ~a~~~AAalA~as~vfk~~--D~~y--------A~~~L~~A~~~~~fa~~~~-----~~y~~~~~~~~~~Y~ss~~~D-- 213 (433)
T 1ks8_A 151 LAGETAAALAAASIVFRNV--DGTY--------SNNLLTHARQLFDFANNYR-----GKYSDSITDARNFYASADYRD-- 213 (433)
T ss_dssp HHHHHHHHHHHHHHHTTTT--CHHH--------HHHHHHHHHHHHHHHHHSC-----CCHHHHSGGGGGTSCCCCTHH--
T ss_pred HHHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHCC-----CcccCCCCcCCCCCCCCCccc--
Confidence 3488899999999999762 1223 2678999999999998752 111000000000 0123333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHH
Q 003940 623 AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLAS 702 (784)
Q Consensus 623 A~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~ 702 (784)
.++.|.++||.+|||+.|++.|++....+... ...++|.+ |+. .+...+.|+.
T Consensus 214 -E~~WAAa~Ly~aTgd~~Yl~~~~~~~~~~~~~---~~~~~~~W----------------d~~-------~~g~~~lla~ 266 (433)
T 1ks8_A 214 -ELVWAAAWLYRATNDNTYLNTAESLYDEFGLQ---NWGGGLNW----------------DSK-------VSGVQVLLAK 266 (433)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHTTGG---GSCCCCCS----------------SCC-------HHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCcC---cCcCCcCc----------------cch-------hhHHHHHHhh
Confidence 45889999999999999999999865432110 01111211 111 1112333556
Q ss_pred HhCCCCchHHHHHHHHHHHHHHHHHHHhhhh
Q 003940 703 IVAGSKSDYYRQNAEHSLAVFETRLKDMAMA 733 (784)
Q Consensus 703 lt~~~~~~~y~e~A~~~l~~~~~~l~~~p~~ 733 (784)
+++. ..|++.++..+..+...+...|.+
T Consensus 267 ~~~~---~~~~~~~~~~~~~~~~~~~~tp~G 294 (433)
T 1ks8_A 267 LTNK---QAYKDTVQSYVNYLINNQQKTPKG 294 (433)
T ss_dssp HHCC---HHHHHHHHHHHHHHHHTSCBCTTS
T ss_pred ccCh---HHHHHHHHHHHHHHHhcCCcCCCC
Confidence 6653 678888888877776655555554
No 205
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=97.62 E-value=6.1e-05 Score=72.03 Aligned_cols=80 Identities=15% Similarity=0.192 Sum_probs=48.4
Q ss_pred cCCcEEEEEcccCCh-hhhhhhhcccCCHHHHHHHhc---ccEEEEEcCC---CCccHHHHHHHH---------------
Q 003940 137 RDVPIFLSIGYSTCH-WCHVMEVESFEDEGVAKLLND---WFVSIKVDRE---ERPDVDKVYMTY--------------- 194 (784)
Q Consensus 137 e~KpI~l~~~~~wC~-wC~~Me~etf~d~eVa~~ln~---~FV~VkvD~e---e~pdi~~~y~~~--------------- 194 (784)
.||+|+|.|+++||+ .|..+-.+ + .++.+.+.+ ++..|-|+.+ +.++..+.|.+.
T Consensus 32 ~gk~vll~f~~~~C~~~C~~~~~~-l--~~l~~~~~~~~~~~~vv~is~d~~~d~~~~~~~~~~~~~~~~~~~~~l~d~~ 108 (174)
T 1xzo_A 32 KGEVWLADFIFTNCETICPPMTAH-M--TDLQKKLKAENIDVRIISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYS 108 (174)
T ss_dssp TTCCEEEEEECSCCSSCCCSHHHH-H--HHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHHHTTSCCCGGGEEEEBCSC
T ss_pred CCCEEEEEEEcCCCcchhHHHHHH-H--HHHHHHhhhcCCcEEEEEEEeCCCCCCHHHHHHHHHHcCCCCcceEEEeCCC
Confidence 589999999999999 99875432 2 244444443 2555555544 222222222110
Q ss_pred ---HHHh---------------cCCCCCCcEEEECCCCceecc
Q 003940 195 ---VQAL---------------YGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 195 ---~q~~---------------~g~~G~P~~vfl~pdg~pi~~ 219 (784)
.+.+ .+..+.|+++++|++|+++..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~ 151 (174)
T 1xzo_A 109 QSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKD 151 (174)
T ss_dssp HHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEE
T ss_pred HHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEE
Confidence 0000 134568999999999999875
No 206
>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10
Probab=97.62 E-value=6.7e-05 Score=74.21 Aligned_cols=80 Identities=13% Similarity=0.083 Sum_probs=50.5
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHH---------------------
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~--------------------- 193 (784)
.||+|+|.|+ ++||+.|+.+.. .++ ++.+.+. +++..|.|+.+. ++..+.|.+
T Consensus 32 ~gk~vvl~F~~a~~C~~C~~~~~-~l~--~l~~~~~~~~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 107 (198)
T 1zof_A 32 GKNGVILFFWPKDFTFVCPTEII-AFD--KRVKDFHEKGFNVIGVSIDS-EQVHFAWKNTPVEKGGIGQVSFPMVADITK 107 (198)
T ss_dssp CSSEEEEEECSCTTCSSCCTHHH-HHH--HTHHHHHHTTEEEEEEESSC-HHHHHHHHTSCGGGTCCCCCSSCEEECTTS
T ss_pred CCCcEEEEEECCCCCCchHHHHH-HHH--HHHHHHHHcCCEEEEEECCC-HHHHHHHHHhhhhcccccCceeEEEECCch
Confidence 5899999999 999999997654 222 2333333 346666666553 221122211
Q ss_pred HHHHhcCCC-----CCCcEEEECCCCceeccc
Q 003940 194 YVQALYGGG-----GWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 194 ~~q~~~g~~-----G~P~~vfl~pdg~pi~~~ 220 (784)
.....+|+. ++|+++++|++|+++...
T Consensus 108 ~~~~~~~v~~~~g~~~P~~~lid~~G~i~~~~ 139 (198)
T 1zof_A 108 SISRDYDVLFEEAIALRGAFLIDKNMKVRHAV 139 (198)
T ss_dssp HHHHHTTCEETTTEECEEEEEEETTTEEEEEE
T ss_pred HHHHHhCCcccCCcccceEEEECCCCEEEEEE
Confidence 011223666 899999999999998763
No 207
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}
Probab=97.60 E-value=4.3e-05 Score=74.61 Aligned_cols=81 Identities=12% Similarity=0.075 Sum_probs=49.9
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCC-------CccHHHHHHHH-HH----------
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREE-------RPDVDKVYMTY-VQ---------- 196 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee-------~pdi~~~y~~~-~q---------- 196 (784)
-.||+|+|.|+++||+.|+.+-. .+ .++.+.+.+ ++..|.|+.++ .++..+.|.+. ..
T Consensus 47 ~~Gk~vlv~F~atwC~~C~~~~p-~l--~~l~~~~~~~~v~vv~vs~d~~~~~e~~~~~~~~~~~~~~~~~~~p~~~~~d 123 (181)
T 2p31_A 47 YRGSVSLVVNVASECGFTDQHYR-AL--QQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIA 123 (181)
T ss_dssp GTTSEEEEEEECSSSTTHHHHHH-HH--HHHHHHHGGGTEEEEEEECCCSTTCCCSCHHHHHHHHHHHHCCCSCBBCCCC
T ss_pred cCCCEEEEEEeccCCCCcHHHHH-HH--HHHHHHhhcCCEEEEEEECcCCCCCCCCCHHHHHHHHHhhcCCCceeEeecc
Confidence 36899999999999999997544 22 244555543 47777776542 22222223221 00
Q ss_pred --------H-hcCCCCCC-------cEEEECCCCceecc
Q 003940 197 --------A-LYGGGGWP-------LSVFLSPDLKPLMG 219 (784)
Q Consensus 197 --------~-~~g~~G~P-------~~vfl~pdg~pi~~ 219 (784)
. ..++.++| ++++++++|+++..
T Consensus 124 ~~g~~~~~~~~~~~~~~P~~~~~~~~~~lid~~G~i~~~ 162 (181)
T 2p31_A 124 VTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGA 162 (181)
T ss_dssp CSSTTSCHHHHHHHHHHSCCCCSTTCEEEECTTSCEEEE
T ss_pred cCCccchhhhhhhhhcCCCccccceeEEEEcCCCCEEEE
Confidence 0 00123578 99999999999875
No 208
>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}
Probab=97.59 E-value=1.8e-05 Score=84.36 Aligned_cols=73 Identities=12% Similarity=0.028 Sum_probs=47.1
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcC----CCCccHHHHHHHHHHHhcCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR----EERPDVDKVYMTYVQALYGGGG 203 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~----ee~pdi~~~y~~~~q~~~g~~G 203 (784)
+.+++.|+.-++..+++|+++||+.|+.|+. .|+.- + +.+-.|++|. +++|++.+.| ++.|
T Consensus 187 ~~~~~la~~l~~~~vV~F~A~WC~~Ck~l~p-~le~l--A----~~l~~Vd~d~~d~~~~~~~la~~~--------gI~~ 251 (291)
T 3kp9_A 187 PLAVGLAAHLRQIGGTMYGAYWCPHCQDQKE-LFGAA--F----DQVPYVECSPNGPGTPQAQECTEA--------GITS 251 (291)
T ss_dssp STHHHHHHHHHHTTCEEEECTTCHHHHHHHH-HHGGG--G----GGSCEEESCSSCSSSCCCHHHHTT--------TCCS
T ss_pred HHHHHHHHHhCCCCEEEEECCCCHHHHHHHH-HHHHH--H----HHcCEEEEeecCchhhHHHHHHHc--------CCcc
Confidence 3444444444444478999999999999975 45532 2 2233455553 3367776655 8999
Q ss_pred CCcEEEECCCCceec
Q 003940 204 WPLSVFLSPDLKPLM 218 (784)
Q Consensus 204 ~P~~vfl~pdg~pi~ 218 (784)
+||+++ +|+++.
T Consensus 252 vPT~~i---~G~~~~ 263 (291)
T 3kp9_A 252 YPTWII---NGRTYT 263 (291)
T ss_dssp TTEEEE---TTEEEE
T ss_pred cCeEEE---CCEEec
Confidence 999554 788643
No 209
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Probab=97.58 E-value=0.00017 Score=72.63 Aligned_cols=43 Identities=9% Similarity=-0.052 Sum_probs=30.2
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCC
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDRE 182 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~e 182 (784)
.||+|+|.|+++||+.|+.+-. .+ .++.+.+. +.+..|-|+.+
T Consensus 46 ~Gk~vlv~FwatwC~~C~~e~p-~l--~~l~~~~~~~g~~vv~v~~d 89 (208)
T 2f8a_A 46 RGKVLLIENVASLGGTTVRDYT-QM--NELQRRLGPRGLVVLGFPCN 89 (208)
T ss_dssp TTSEEEEEEECSSSTTHHHHHH-HH--HHHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEECCCCccHHHHHH-HH--HHHHHHccCCCeEEEEEECC
Confidence 5899999999999999997433 22 24444444 34777777654
No 210
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=97.57 E-value=6.3e-05 Score=67.05 Aligned_cols=62 Identities=21% Similarity=0.321 Sum_probs=41.5
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCC--CCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~e--e~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg 214 (784)
.++|+++.|+++||++|+.+.. .++. +.+++-..+||++ +.+++.+.| | .+.|+. |. +|
T Consensus 14 ~~~~~v~~f~~~~C~~C~~~~~-~L~~------l~~~i~~~~vdi~~~~~~el~~~~--------g-~~vP~l-~~--~g 74 (100)
T 1wjk_A 14 RALPVLTLFTKAPCPLCDEAKE-VLQP------YKDRFILQEVDITLPENSTWYERY--------K-FDIPVF-HL--NG 74 (100)
T ss_dssp CCCCEEEEEECSSCHHHHHHHH-HTST------TSSSSEEEEEETTSSTTHHHHHHS--------S-SSCSEE-EE--SS
T ss_pred CCCCEEEEEeCCCCcchHHHHH-HHHH------hhhCCeEEEEECCCcchHHHHHHH--------C-CCCCEE-EE--CC
Confidence 4577899999999999999875 4441 2233556677777 444444333 7 899965 44 56
Q ss_pred cee
Q 003940 215 KPL 217 (784)
Q Consensus 215 ~pi 217 (784)
+.+
T Consensus 75 ~~~ 77 (100)
T 1wjk_A 75 QFL 77 (100)
T ss_dssp SEE
T ss_pred EEE
Confidence 664
No 211
>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A
Probab=97.56 E-value=9.4e-05 Score=74.17 Aligned_cols=67 Identities=16% Similarity=0.231 Sum_probs=50.3
Q ss_pred cCCcEEEEEccc-CChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCC--CccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003940 137 RDVPIFLSIGYS-TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (784)
Q Consensus 137 e~KpI~l~~~~~-wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee--~pdi~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (784)
+++.+++.|+++ ||++|+.|.. .++ ++++. ..++..++||.++ .+++.+.| |+.++|+.+|+ .+
T Consensus 21 ~~~v~lv~f~~~~~C~~C~~~~~-~~~--~la~~-~~~v~~~~vd~~~~~~~~~~~~~--------~v~~~Pt~~~~-~~ 87 (226)
T 1a8l_A 21 VNPVKLIVFVRKDHCQYCDQLKQ-LVQ--ELSEL-TDKLSYEIVDFDTPEGKELAKRY--------RIDRAPATTIT-QD 87 (226)
T ss_dssp CSCEEEEEEECSSSCTTHHHHHH-HHH--HHHTT-CTTEEEEEEETTSHHHHHHHHHT--------TCCSSSEEEEE-ET
T ss_pred CCCeEEEEEecCCCCchhHHHHH-HHH--HHHhh-CCceEEEEEeCCCcccHHHHHHc--------CCCcCceEEEE-cC
Confidence 344567899999 9999999986 343 45543 4578888999987 77776655 88999999999 44
Q ss_pred Cce
Q 003940 214 LKP 216 (784)
Q Consensus 214 g~p 216 (784)
|+.
T Consensus 88 g~~ 90 (226)
T 1a8l_A 88 GKD 90 (226)
T ss_dssp TBC
T ss_pred Cce
Confidence 543
No 212
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}
Probab=97.55 E-value=5.2e-05 Score=73.99 Aligned_cols=43 Identities=9% Similarity=0.011 Sum_probs=29.9
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCC
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE 182 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~e 182 (784)
.||+|+|.|+++||+.|+.+-. .++ ++.+.+.+ ++..|.|+.+
T Consensus 46 ~gk~vll~F~atwC~~C~~~~~-~l~--~l~~~~~~~~v~vv~vs~d 89 (183)
T 2obi_A 46 RGFVCIVTNVASQCGKTEVNYT-QLV--DLHARYAECGLRILAFPCN 89 (183)
T ss_dssp TTSEEEEEEECSSSTTHHHHHH-HHH--HHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEeCCCCCCcHHHHH-HHH--HHHHHHhcCCeEEEEEECC
Confidence 5899999999999999987643 222 44444543 4666666543
No 213
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=97.53 E-value=0.00084 Score=77.35 Aligned_cols=87 Identities=13% Similarity=0.150 Sum_probs=63.5
Q ss_pred hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC------CCC
Q 003940 543 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS------KAP 616 (784)
Q Consensus 543 tsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~------~~~ 616 (784)
|++++.++.|||.|++++++. +..| ..++|+.|+++.+|+.++... ++ .++.. ...
T Consensus 242 t~~~~~~AAalA~as~vf~~~--D~~y--------A~~~L~~A~~~~~fa~~~~~~-----~~---~~~~~~~~~~Y~~~ 303 (537)
T 3gzk_A 242 YAATATFCAAMAHAALVYRPF--DPAL--------SSCCADAARRAYAWLGAHEMQ-----PF---HNPDGILTGEYGDA 303 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHTSCCC-----CC---CCCTTCCSCCCCCS
T ss_pred CcHHHHHHHHHHHHHHhhccc--CHHH--------HHHHHHHHHHHHHHHHhcccc-----cc---cCCcccccCCcCCC
Confidence 568899999999999999862 1112 167999999999999886421 11 11100 113
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003940 617 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQN 650 (784)
Q Consensus 617 ~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~ 650 (784)
++.++ ++.|.++||++|||+.||+.|++...
T Consensus 304 ~~~De---l~wAA~~Ly~aTgd~~Yl~~a~~~~~ 334 (537)
T 3gzk_A 304 ELRDE---LLWASCALLRMTGDSAWARVCEPLLD 334 (537)
T ss_dssp CCHHH---HHHHHHHHHHHHCCGGGHHHHHHHHH
T ss_pred ccchH---HHHHHHHHHHHhCCHHHHHHHHHhhh
Confidence 44555 78899999999999999999998765
No 214
>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10
Probab=97.52 E-value=0.00017 Score=71.64 Aligned_cols=80 Identities=9% Similarity=0.011 Sum_probs=49.6
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHH---------------------
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~--------------------- 193 (784)
.||+|+|.|+ ++||+.|+.+.. .|+ ++.+.+. +++..|-|+.+. ++..+.|.+
T Consensus 35 ~gk~vvl~F~~~~~C~~C~~~~~-~l~--~l~~~~~~~~v~vi~Is~D~-~~~~~~~~~~~~~~~~~~~~~~p~l~D~~~ 110 (202)
T 1uul_A 35 KGKWLVLFFYPMDFTFVCPTEIC-QFS--DRVKEFSDIGCEVLACSMDS-EYSHLAWTSIERKRGGLGQMNIPILADKTK 110 (202)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHH-HHH--HTHHHHHTTTEEEEEEESSC-HHHHHHHHHSCGGGTCCCSCSSCEEECTTC
T ss_pred CCCeEEEEEECCCCCCcCHHHHH-HHH--HHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHhhCCCCCCceeEEECCch
Confidence 4899999999 999999997654 232 3334443 345555555542 111111111
Q ss_pred HHHHhcCCC------CCCcEEEECCCCceeccc
Q 003940 194 YVQALYGGG------GWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 194 ~~q~~~g~~------G~P~~vfl~pdg~pi~~~ 220 (784)
.+...+|+. ++|+++++|++|++++..
T Consensus 111 ~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~ 143 (202)
T 1uul_A 111 CIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQIT 143 (202)
T ss_dssp HHHHHHTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHcCCccCCCCceeeEEEEECCCCEEEEEE
Confidence 011113666 899999999999998763
No 215
>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10
Probab=97.50 E-value=6.7e-05 Score=73.85 Aligned_cols=80 Identities=5% Similarity=-0.077 Sum_probs=49.4
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHH---------------------
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~--------------------- 193 (784)
.||+|+|.|+ ++||+.|..+.. .|+ ++.+.+. +++..|-|+.+. ++..+.|.+
T Consensus 30 ~gk~vvl~F~~a~~C~~C~~~~~-~l~--~~~~~~~~~~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~ 105 (192)
T 2h01_A 30 GKKYVLLYFYPLDFTFVCPSEII-ALD--KALDSFKERNVELLGCSVDS-KFTHLAWKKTPLSQGGIGNIKHTLISDISK 105 (192)
T ss_dssp TTCEEEEEECSCSSCSSCCHHHH-HHH--HTHHHHHHTTEEEEEEESSC-HHHHHHHHTSCGGGTCCCSCSSEEEECTTS
T ss_pred CCCeEEEEEECCCCCCCCHHHHH-HHH--HHHHHHHHCCCEEEEEEeCC-HHHHHHHHHhHHhhCCccCCCcCeEECCcH
Confidence 5899999999 999999997643 222 2333332 345555555542 221111111
Q ss_pred HHHHhcCCC-----CCCcEEEECCCCceeccc
Q 003940 194 YVQALYGGG-----GWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 194 ~~q~~~g~~-----G~P~~vfl~pdg~pi~~~ 220 (784)
.+...+|+. ++|+++++|++|++++..
T Consensus 106 ~~~~~~gv~~~~g~~~P~~~liD~~G~i~~~~ 137 (192)
T 2h01_A 106 SIARSYDVLFNESVALRAFVLIDKQGVVQHLL 137 (192)
T ss_dssp HHHHHTTCEETTTEECCEEEEECTTSBEEEEE
T ss_pred HHHHHhCCcCcCCceeeEEEEEcCCCEEEEEE
Confidence 011123666 799999999999998763
No 216
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=97.50 E-value=0.00029 Score=68.38 Aligned_cols=93 Identities=15% Similarity=0.121 Sum_probs=53.0
Q ss_pred cCCcEEEEEcccC-ChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHH----------------HHHHHHh
Q 003940 137 RDVPIFLSIGYST-CHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVY----------------MTYVQAL 198 (784)
Q Consensus 137 e~KpI~l~~~~~w-C~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y----------------~~~~q~~ 198 (784)
.||+++|.|+++| |+.|+.+-. .+.++.. +++..|-|+.+. ++..+.| ....+ .
T Consensus 43 ~gk~vvl~F~~t~~C~~C~~~~~------~l~~l~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~~~~l~D~~~~~~~-~ 114 (175)
T 1xvq_A 43 RGKSVLLNIFPSVDTPVCATSVR------TFDERAAASGATVLCVSKDL-PFAQKRFCGAEGTENVMPASAFRDSFGE-D 114 (175)
T ss_dssp TTSCEEEEECSCCCSSCCCHHHH------HHHHHHHHTTCEEEEEESSC-HHHHTTCC------CEEEEECTTSSHHH-H
T ss_pred CCCEEEEEEEeCCCCchHHHHHH------HHHHHHhhcCCEEEEEECCC-HHHHHHHHHHcCCCCceEeeCCHHHHHH-H
Confidence 4899999999999 999987643 3333322 345555554431 1100000 00111 1
Q ss_pred cCCCCC---------CcEEEECCCCceecccc--ccCCCCCCCcchHHHHHHHHH
Q 003940 199 YGGGGW---------PLSVFLSPDLKPLMGGT--YFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 199 ~g~~G~---------P~~vfl~pdg~pi~~~t--Y~p~~~~~~~~~f~~~L~~i~ 242 (784)
+|+.+. |+++++|++|++++... -..+ .+.+.++|+.+.
T Consensus 115 ~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~-----~~~~~~~l~~l~ 164 (175)
T 1xvq_A 115 YGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQ-----EPNYEAALAALG 164 (175)
T ss_dssp TTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTC-----CCCHHHHHHHHH
T ss_pred hCCcccccccCCcccceEEEECCCCeEEEEEECCCcCC-----CCCHHHHHHHHH
Confidence 255444 99999999999987631 1111 235777776655
No 217
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10
Probab=97.50 E-value=0.00015 Score=73.55 Aligned_cols=79 Identities=10% Similarity=0.008 Sum_probs=49.4
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHH----------------------
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYM---------------------- 192 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~---------------------- 192 (784)
.||+|+|.|+ ++||+.|+.+.. .|+ ++.+.+. +++..|-|+.+. ++..+.|.
T Consensus 55 ~Gk~vll~F~pa~~Cp~C~~~~~-~l~--~l~~~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~ 130 (220)
T 1zye_A 55 KGKYLVLFFYPLDFTFVCPTEII-AFS--DKASEFHDVNCEVVAVSVDS-HFSHLAWINTPRKNGGLGHMNIALLSDLTK 130 (220)
T ss_dssp TTSEEEEEECSCTTCSSSHHHHH-HHH--HHHHHHHHTTEEEEEEESSC-HHHHHHHHTSCGGGTCCCSCSSEEEECTTS
T ss_pred CCCeEEEEEECCCCCCCCHHHHH-HHH--HHHHHHHHCCCEEEEEECCC-HHHHHHHHHHHHHhCCCcCCceEEEECCcH
Confidence 4799999999 999999997654 333 3444443 355555555442 11111110
Q ss_pred HHHHHhcCCC------CCCcEEEECCCCceeccc
Q 003940 193 TYVQALYGGG------GWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 193 ~~~q~~~g~~------G~P~~vfl~pdg~pi~~~ 220 (784)
+..+ .+|+. ++|+++++|++|++++..
T Consensus 131 ~i~~-~ygv~~~~~g~~~P~~~liD~~G~I~~~~ 163 (220)
T 1zye_A 131 QISR-DYGVLLEGPGLALRGLFIIDPNGVIKHLS 163 (220)
T ss_dssp HHHH-HTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHH-HhCCeecCCCcccceEEEECCCCEEEEEE
Confidence 1111 23666 899999999999998864
No 218
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Probab=97.45 E-value=0.00026 Score=69.22 Aligned_cols=43 Identities=7% Similarity=-0.093 Sum_probs=28.8
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCC
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDRE 182 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~e 182 (784)
.||+|+|.|+++||+.|+.+-. .++ ++.+.+.+ ++..|-|+.+
T Consensus 48 ~Gk~vlv~F~atwC~~C~~~~~-~l~--~l~~~~~~~~v~vv~is~d 91 (185)
T 2gs3_A 48 RGFVCIVTNVASQGGKTEVNYT-QLV--DLHARYAECGLRILAFPCN 91 (185)
T ss_dssp TTSEEEEEEECSSSTTHHHHHH-HHH--HHHHHHGGGTEEEEEEECC
T ss_pred CCCEEEEEEecCCCCchHHHHH-HHH--HHHHHhhcCCeEEEEEECc
Confidence 5899999999999999987543 222 34444433 4666666543
No 219
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=97.41 E-value=0.00021 Score=81.67 Aligned_cols=77 Identities=16% Similarity=0.077 Sum_probs=58.0
Q ss_pred HHHHHHHhhc-CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAFAEARKR-DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal~~Ak~e-~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
++.+++.++. +++.++.|+++||++|+.|.. .++ +++. .+.+....+||.++.|++.+.| ++.++|+
T Consensus 106 ~~~~~~i~~~~~~~~i~~f~a~~C~~C~~~~~-~l~--~~a~-~~~~v~~~~vd~~~~~~~~~~~--------~i~svPt 173 (521)
T 1hyu_A 106 QSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQ-ALN--LMAV-LNPRIKHTAIDGGTFQNEITER--------NVMGVPA 173 (521)
T ss_dssp HHHHHHHHHCCSCEEEEEEECTTCSSHHHHHH-HHH--HHHH-HCTTEEEEEEETTTCHHHHHHT--------TCCSSSE
T ss_pred HHHHHHHHhcCCCcceEEEECCCCcCcHHHHH-HHH--HHHh-HcCceEEEEEechhhHHHHHHh--------CCCccCE
Confidence 5666666654 445577888999999999875 333 3333 3457788899999999988777 8899999
Q ss_pred EEEECCCCceecc
Q 003940 207 SVFLSPDLKPLMG 219 (784)
Q Consensus 207 ~vfl~pdg~pi~~ 219 (784)
.++ +|+++..
T Consensus 174 ~~i---~g~~~~~ 183 (521)
T 1hyu_A 174 VFV---NGKEFGQ 183 (521)
T ss_dssp EEE---TTEEEEE
T ss_pred EEE---CCEEEec
Confidence 977 8888755
No 220
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A
Probab=97.40 E-value=0.00063 Score=64.49 Aligned_cols=80 Identities=8% Similarity=-0.009 Sum_probs=49.7
Q ss_pred cCCcEEEEEcc-cCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHHH--------------HHHhcC
Q 003940 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY--------------VQALYG 200 (784)
Q Consensus 137 e~KpI~l~~~~-~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~~--------------~q~~~g 200 (784)
.||+++|.|++ +||+.|...-. .++ ++.+.+. +++..|-|..+ .++..+.|.+. +...+|
T Consensus 34 ~gk~~vl~F~~~~~c~~C~~~~~-~l~--~~~~~~~~~~~~vv~vs~d-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 109 (163)
T 3gkn_A 34 AGHWLVIYFYPKDSTPGATTEGL-DFN--ALLPEFDKAGAKILGVSRD-SVKSHDNFCAKQGFAFPLVSDGDEALCRAFD 109 (163)
T ss_dssp TTSCEEEEECSCTTSHHHHHHHH-HHH--HHHHHHHHTTCEEEEEESS-CHHHHHHHHHHHCCSSCEEECTTCHHHHHTT
T ss_pred CCCcEEEEEeCCCCCCcHHHHHH-HHH--HHHHHHHHCCCEEEEEeCC-CHHHHHHHHHHhCCCceEEECCcHHHHHHhC
Confidence 58899999998 99999997543 222 3333333 34555555554 34433444321 111124
Q ss_pred CCC------------CCcEEEECCCCceeccc
Q 003940 201 GGG------------WPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 201 ~~G------------~P~~vfl~pdg~pi~~~ 220 (784)
+.+ .|+++++|++|++++..
T Consensus 110 v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~ 141 (163)
T 3gkn_A 110 VIKEKNMYGKQVLGIERSTFLLSPEGQVVQAW 141 (163)
T ss_dssp CEEEEEETTEEEEEECCEEEEECTTSCEEEEE
T ss_pred CccccccccccccCcceEEEEECCCCeEEEEE
Confidence 444 89999999999998753
No 221
>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*
Probab=97.40 E-value=0.0002 Score=70.86 Aligned_cols=78 Identities=8% Similarity=-0.067 Sum_probs=49.1
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHH----------------------
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYM---------------------- 192 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~---------------------- 192 (784)
.||+|+|.|+ ++||+.|..+.. .| .++.+.+. +++..|-|+.+...+. +.|+
T Consensus 33 ~gk~vvl~F~~a~~C~~C~~~~~-~l--~~l~~~~~~~~v~vv~Is~d~~~~~-~~~~~~~~~~~~~~~~~~p~l~D~~~ 108 (197)
T 1qmv_A 33 KGKYVVLFFYPLDFTFVAPTEII-AF--SNRAEDFRKLGCEVLGVSVDSQFTH-LAWINTPRKEGGLGPLNIPLLADVTR 108 (197)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHH-HH--HHTHHHHHTTTEEEEEEESSCHHHH-HHHHTSCGGGTCCCSCSSCEEECTTC
T ss_pred CCCeEEEEEECCCCCCCCHHHHH-HH--HHHHHHHHHCCCEEEEEECCCHHHH-HHHHHHHHhhCCCCCCceEEEECCcH
Confidence 5899999999 999999998654 22 23444443 3455555555421111 1111
Q ss_pred HHHHHhcCCC------CCCcEEEECCCCceecc
Q 003940 193 TYVQALYGGG------GWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 193 ~~~q~~~g~~------G~P~~vfl~pdg~pi~~ 219 (784)
+... .+|+. ++|+++++|++|++++.
T Consensus 109 ~~~~-~~gv~~~~~~~~~P~~~lid~~G~i~~~ 140 (197)
T 1qmv_A 109 RLSE-DYGVLKTDEGIAYRGLFIIDGKGVLRQI 140 (197)
T ss_dssp HHHH-HTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHHH-HcCCccCCCCceeeEEEEECCCCcEEEE
Confidence 1111 13555 79999999999999876
No 222
>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D
Probab=97.39 E-value=0.00023 Score=72.25 Aligned_cols=81 Identities=11% Similarity=0.034 Sum_probs=50.0
Q ss_pred hcCCcEEEEEcc-cCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHHH-------------------
Q 003940 136 KRDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY------------------- 194 (784)
Q Consensus 136 ~e~KpI~l~~~~-~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~~------------------- 194 (784)
-.||+|+|.|++ +||..|...-. .+ .++.+.+. +++..|-|..+. ++..+.+.+.
T Consensus 67 ~~Gk~vll~F~a~~wC~~C~~~~p-~l--~~l~~~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~~~~~~~~~~l~D~~ 142 (222)
T 3ztl_A 67 YRGKYVVLFFYPADFTFVCPTEII-AF--SDQVEEFNSRNCQVIACSTDS-QYSHLAWDNLDRKSGGLGHMKIPLLADRK 142 (222)
T ss_dssp GTTSEEEEEECSCSSCSHHHHHHH-HH--HHTHHHHHTTTEEEEEEESSC-HHHHHHHHHSCGGGTSCCSCSSCEEECSS
T ss_pred hCCCeEEEEEECCCCCCchHHHHH-HH--HHHHHHHHHCCCEEEEEECCC-HHHHHHHHHHhhhhccccccceeEEeCCc
Confidence 368999999997 99999998543 22 23444443 345555555542 2111122110
Q ss_pred --HHHhcCCC------CCCcEEEECCCCceeccc
Q 003940 195 --VQALYGGG------GWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 195 --~q~~~g~~------G~P~~vfl~pdg~pi~~~ 220 (784)
+...+|+. ++|+++++|++|++++..
T Consensus 143 ~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~ 176 (222)
T 3ztl_A 143 QEISKAYGVFDEEDGNAFRGLFIIDPNGILRQIT 176 (222)
T ss_dssp SHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEE
T ss_pred hHHHHHcCCeecCCCCccceEEEECCCCeEEEEE
Confidence 11223555 789999999999998763
No 223
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=97.31 E-value=0.0022 Score=75.29 Aligned_cols=89 Identities=8% Similarity=0.042 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe-cCCCC--CCCCCcc
Q 003940 544 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF-RNGPS--KAPGFLD 620 (784)
Q Consensus 544 sWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~--~~~~~le 620 (784)
.-.+-++.|||.|++++++. +..| ..++|+.|+++.+|..++- |..+... ..+.. ...++.
T Consensus 287 ~~a~e~AAAlAaAS~vfk~~--D~~y--------A~~~L~~Ak~l~~fA~~~~-----~~~y~~~~~~~~g~Y~ss~~~- 350 (639)
T 1clc_A 287 AATADFVAMTAMAARIFRPY--DPQY--------AEKCINAAKVSYEFLKNNP-----ANVFANQSGFSTGEYATVSDA- 350 (639)
T ss_dssp HHHHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHCC-----SCCCCCCTTCCSCCCCCSCSH-
T ss_pred HHHHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcC-----CCccCCCccccccccCCCCcc-
Confidence 34577899999999999762 1222 2678999999999998753 1111000 00000 112333
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 003940 621 DYAFLISGLLDLYEFGSGTKWLVWAIELQN 650 (784)
Q Consensus 621 DyA~li~aLL~LYeaTgd~~yL~~A~~L~~ 650 (784)
-.++.|.++||.+|||+.||+.|++...
T Consensus 351 --DEl~WAAawLy~ATgd~~Yl~~a~~~~~ 378 (639)
T 1clc_A 351 --DDRLWAAAEMWETLGDEEYLRDFENRAA 378 (639)
T ss_dssp --HHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4458899999999999999999988664
No 224
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Probab=97.29 E-value=0.15 Score=56.75 Aligned_cols=307 Identities=15% Similarity=0.128 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceee----cccCCCcccccc--c-cccCCceEEechHHH
Q 003940 381 DQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFS----AEDADSAETEGA--T-RKKEGAFYVWTSKEV 453 (784)
Q Consensus 381 DNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfys----a~DADS~~~~~~--~-~~~EGayY~Wt~~Ei 453 (784)
.|--++++++-.-.+|+||.|++.|.++.+|.+.++.++.|-||| .+|=|....+|. | .-.|=++-.=-.+=+
T Consensus 59 sQQN~lR~L~~LS~lTgd~~Y~q~A~~~~~yf~dh~vd~sGL~~WGGHrFi~L~tl~~eGP~~K~~VHELKhh~PyY~lm 138 (543)
T 2v8i_A 59 AQQNLMRVMSGLSQLSGDPRYQKRAEDIVRYHFQNYQDPSGLLYWGGHRFVDLKTLQPEGPSEKEMVHELKNAYPYYDLM 138 (543)
T ss_dssp GCHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHSBCTTSCBSCSTTCEEETTTCCEECCCTTCCSBCCSSCCCCHHHH
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcccCCCCceeecCceeEeccccCccCccccchhhHhhhcCchHHHH
Confidence 466788999999999999999999999999999999888898987 344443322221 1 111222111112223
Q ss_pred HHHhhhhH-HHHHHHhc----------ccCCCCcCCCC----CCCCCC--C-CCCcceeecc------CCchHHHHhcCC
Q 003940 454 EDILGEHA-ILFKEHYY----------LKPTGNCDLSR----MSDPHN--E-FKGKNVLIEL------NDSSASASKLGM 509 (784)
Q Consensus 454 ~~~Lg~~~-~l~~~~f~----------l~~~Gn~e~~~----~~dp~g--~-f~g~nvL~~~------~~~~~~a~~~g~ 509 (784)
.++-++.. ..++..|+ +..-|++.-.. .+||.+ . ++++..-.+. .+...+++..|
T Consensus 139 ~~vdp~aT~rfi~afWnAHV~DW~~Ld~~RHG~Y~k~~~~~~f~dp~~~p~l~etkGLTFvNaG~DLiYaA~~l~~~~g- 217 (543)
T 2v8i_A 139 FSVDSDATARFIRGFWNAHVYDWRILETSRHGEYGKPMGALWESKFEQQPPFFATKGLSFLNAGNDLIYSASLLYKHQQ- 217 (543)
T ss_dssp HHHCHHHHHHHHHHHHHHHEEETTTTEECSCBCTTCCCCCGGGSCCCCCCTTEEESSCCCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHcCHHHHHHHHHHHHHHHhhhhhhcccccCCCCCCCCCchhccCcccCCCccccCCceEeecCcHHHHHHHHHHHhCC-
Confidence 33333332 33344442 34555543211 113321 1 1222111111 00111222222
Q ss_pred CHHHHHHHHHHHHHHHHhhhc--------------CCCCCC--------------------------------C-Cchhh
Q 003940 510 PLEKYLNILGECRRKLFDVRS--------------KRPRPH--------------------------------L-DDKVI 542 (784)
Q Consensus 510 ~~~~l~~~l~~~r~kL~~~R~--------------~R~~P~--------------------------------l-DdKii 542 (784)
+. .....=+...+.-..+|. +|..|. + |+.-|
T Consensus 218 d~-~a~~W~k~L~~QYVlaR~p~TGl~vYQFssp~kr~~P~dd~~t~S~~GDRAqRQFGPEfG~iA~EanvLFk~d~~pl 296 (543)
T 2v8i_A 218 DQ-GALTWAKRLADQYVLPRDAKTGLGVYQFTQALKREEPTDDADTHSKFGDRAQRQFGPEFGPTALEGNMMLKGRTSTL 296 (543)
T ss_dssp CH-HHHHHHHHHHHHTTTTSCTTTCCCCSCSEEECCCSCCCCTTCCCGGGCCHHHHHHHHHHCTTCCGGGEECTTHHHHH
T ss_pred ch-HHHHHHHHHHHHHhhccCCCCCCceeeecCccccCCCcccccccchhhhHHHhhhCcccchhhhhhcceeccCCcce
Confidence 11 111111111222233443 344443 2 34444
Q ss_pred hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCC-------
Q 003940 543 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKA------- 615 (784)
Q Consensus 543 tsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~------- 615 (784)
..=|+||...|++- .++. .++.++.++.....-.+..||++++.|.-.+.||+...
T Consensus 297 ~~dn~La~l~l~~~---~~~~--------------d~~~l~W~i~gLka~~~yAYd~~~N~~~Pm~~dG~dltgy~l~Rd 359 (543)
T 2v8i_A 297 YSENALMQLQLGKD---LGPQ--------------GQDLLKWTVDGLKAFAKYAYNDQDNTFRPMIANGQDLSNYTLPRD 359 (543)
T ss_dssp HTHHHHHHHHHHHH---HGGG--------------GHHHHHHHHHHHHHHHHHHEETTTTEECCEETTSCBCTTEECSSC
T ss_pred eecCHHHHHHHHHH---hcCc--------------hHHHHHHHHHHHHHHHHHhhccCCCceeecccCCcCCcCcccccc
Confidence 44566665555554 3221 16788888888877788889999998887788875421
Q ss_pred ----------CCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCC-CCccccccccCCCC
Q 003940 616 ----------PGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGE-DPSVLLRVKEDHDG 684 (784)
Q Consensus 616 ----------~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~-~~~l~~R~k~~~D~ 684 (784)
.+++-+-. ....++..|.+++|+.-.+.+..++..+.- |. ..+... ...+ +.
T Consensus 360 GYYG~KGtvl~~~p~~~~-yll~~vra~~~s~D~~Lw~~~~~ma~~~~l-------gd-i~~~~~~~~~~--------~~ 422 (543)
T 2v8i_A 360 GYYGKKGTVLKPYKAGNE-FLISYARAYAIDNDPLLWKVARGIANDQGL-------GD-IGTAPGKEVKV--------NM 422 (543)
T ss_dssp BTTBCTTCEECCEECCHH-HHHHHHHHHHHSCCHHHHHHHHHHHHHTTC-------EE-CTTBTTBSCEE--------CT
T ss_pred cccCCCCCeeccccCCch-hhHHHHHHHHcCCCHHHHHHHHHHHhhCCc-------cc-cCCCcCccccc--------cc
Confidence 23333334 466999999999999988888877654321 11 121111 1111 22
Q ss_pred CCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 003940 685 AEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 726 (784)
Q Consensus 685 a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~ 726 (784)
..++....++.+|++|++.++. +.|++.|+++-+.+..+
T Consensus 423 ~~~~~sp~lL~allEL~~atq~---~~~l~lA~~~g~nl~~~ 461 (543)
T 2v8i_A 423 DTTNSDPYALFALLDLYHASQV---ADYRKLAEKIGDNIIKI 461 (543)
T ss_dssp TCCCCCHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHH
Confidence 3344556788999999999986 89999999887776553
No 225
>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A
Probab=97.27 E-value=0.0008 Score=67.95 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=21.4
Q ss_pred hcCCcEEEEEcccCChhhhhhhhc
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVE 159 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~e 159 (784)
..+|++++.|+..||++|+.|+.+
T Consensus 84 ~~~k~~vv~F~d~~Cp~C~~~~~~ 107 (216)
T 1eej_A 84 PQEKHVITVFTDITCGYCHKLHEQ 107 (216)
T ss_dssp TTCCEEEEEEECTTCHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCHHHHHHHHH
Confidence 467899999999999999999864
No 226
>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A
Probab=97.27 E-value=0.00032 Score=67.82 Aligned_cols=104 Identities=18% Similarity=0.180 Sum_probs=57.9
Q ss_pred HhhcCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHH--------------HHh
Q 003940 134 ARKRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYV--------------QAL 198 (784)
Q Consensus 134 Ak~e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~--------------q~~ 198 (784)
-..+||+|+|.|+ ++||+.|... -..|++- ..++-++++..|-|..+ .|+..+.|.+.. ...
T Consensus 29 ~~~~Gk~vvl~f~~~~~cp~C~~e-~~~l~~~-~~~~~~~~v~vv~is~d-~~~~~~~~~~~~~~~fp~l~D~~~~v~~~ 105 (164)
T 4gqc_A 29 VLKRGRPAVLIFFPAAFSPVCTKE-LCTFRDK-MAQLEKANAEVLAISVD-SPWCLKKFKDENRLAFNLLSDYNREVIKL 105 (164)
T ss_dssp HHHTSSCEEEEECSCTTCCEECSS-CEESCCC-GGGGGGSSSEEEEEESS-CHHHHHHHHHHTTCCSEEEECTTSHHHHH
T ss_pred HhcCCCEEEEEEeCCCCCCCcccc-hhhhhhh-HHHhhccCceEEEecCC-CHHHHHHHHHhcCcccceeecCchHHHHH
Confidence 3457999999998 9999999863 2233321 11222234555555443 343333332210 011
Q ss_pred cCCC----------CCCcEEEECCCCceeccc-cccCCCCCCCcchHHHHHHHHHHH
Q 003940 199 YGGG----------GWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVKDA 244 (784)
Q Consensus 199 ~g~~----------G~P~~vfl~pdg~pi~~~-tY~p~~~~~~~~~f~~~L~~i~~~ 244 (784)
+|+. ..|+++++|++|++.+.. +..| .+++++-++|+.+.++
T Consensus 106 ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~----~~~~~~~eil~~l~~l 158 (164)
T 4gqc_A 106 YNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNP----LNEPDYDEVVREANKI 158 (164)
T ss_dssp TTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCT----TCCCCHHHHHHHHHHH
T ss_pred cCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCC----CCCCCHHHHHHHHHHH
Confidence 2331 268899999999998753 1222 2345677777766543
No 227
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=97.26 E-value=0.00081 Score=65.29 Aligned_cols=53 Identities=21% Similarity=0.441 Sum_probs=32.7
Q ss_pred hcCCcEEEEEcccCCh-hhhhhhhcccCCHHHHHHHhc---c--cEEEEEcCC-CCccHHHHH
Q 003940 136 KRDVPIFLSIGYSTCH-WCHVMEVESFEDEGVAKLLND---W--FVSIKVDRE-ERPDVDKVY 191 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~-wC~~Me~etf~d~eVa~~ln~---~--FV~VkvD~e-e~pdi~~~y 191 (784)
=.||+|+|+|++.||+ ||..+-.+ + +++.+.+.+ + ||.|.||-+ +.|+.-+.|
T Consensus 30 ~~Gk~vll~F~~t~Cp~~Cp~~~~~-l--~~l~~~~~~~~~~v~~v~isvDp~~Dtp~~l~~y 89 (170)
T 4hde_A 30 LKGKVWVADFMFTNCQTVCPPMTAN-M--AKLQKMAKEEKLDVQFVSFSVDPDLDKPENLKAF 89 (170)
T ss_dssp HTTSCEEEEEECTTCSSSHHHHHHH-H--HHHHHHHHHTTCCCEEEEEESCTTTCCHHHHHHH
T ss_pred hCCCEEEEEEECCCCCCcccHHHHH-H--HHHHHhhhcccccceeEeeecCcccccHHHHHHH
Confidence 3699999999999996 99765442 2 345555532 3 566666643 234433333
No 228
>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A
Probab=97.26 E-value=0.00044 Score=69.78 Aligned_cols=80 Identities=5% Similarity=-0.078 Sum_probs=49.4
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHH---------------------
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~--------------------- 193 (784)
.||+|+|.|+ ++||+.|..+... |+ ++.+.+. +++..|-|..+. ++..+.|.+
T Consensus 51 ~gk~vvl~F~pa~~C~~C~~~~~~-l~--~l~~~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~ 126 (213)
T 2i81_A 51 GKKYVLLYFYPLDFTFVCPSEIIA-LD--KALDAFHERNVELLGCSVDS-KYTHLAWKKTPLAKGGIGNIKHTLLSDITK 126 (213)
T ss_dssp TTCEEEEEECSCTTSSHHHHHHHH-HH--HTHHHHHHTTEEEEEEESSC-HHHHHHHHSSCGGGTCCCSCSSEEEECTTS
T ss_pred CCCeEEEEEEcCCCCCCCHHHHHH-HH--HHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHHHhhCCccCCCceEEECCch
Confidence 5899999999 9999999986542 32 2333333 345555554442 221122211
Q ss_pred HHHHhcCCC-----CCCcEEEECCCCceeccc
Q 003940 194 YVQALYGGG-----GWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 194 ~~q~~~g~~-----G~P~~vfl~pdg~pi~~~ 220 (784)
.+...+|+. ++|+++++|++|++++..
T Consensus 127 ~~~~~ygv~~~~g~~~p~~~lID~~G~i~~~~ 158 (213)
T 2i81_A 127 SISKDYNVLFDDSVSLRAFVLIDMNGIVQHLL 158 (213)
T ss_dssp HHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHhCCccccCCcccEEEEECCCCEEEEEE
Confidence 011123666 799999999999998764
No 229
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=97.22 E-value=0.0006 Score=70.65 Aligned_cols=71 Identities=11% Similarity=0.156 Sum_probs=52.4
Q ss_pred HHHHHHhhcCCcEEEEEcc--cCChhhhhhhhcccCCHHHHHHHh--cccEEEEEcCCC-----CccHHHHHHHHHHHhc
Q 003940 129 EAFAEARKRDVPIFLSIGY--STCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREE-----RPDVDKVYMTYVQALY 199 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~--~wC~wC~~Me~etf~d~eVa~~ln--~~FV~VkvD~ee-----~pdi~~~y~~~~q~~~ 199 (784)
+-|...-+.+++|||.|++ +||+ |.. +|+ ++++.+. .+++.++||+++ .+++.+.|
T Consensus 13 ~nF~~~i~~~~~vlV~FyA~~pWCg----l~P-~~e--~lA~~~~~~~~v~~akVDvd~~g~~~~~~l~~~~-------- 77 (240)
T 2qc7_A 13 VTFYKVIPKSKFVLVKFDTQYPYGE----KQD-EFK--RLAENSASSDDLLVAEVGISDYGDKLNMELSEKY-------- 77 (240)
T ss_dssp THHHHHGGGCSEEEEEECCSSCCSH----HHH-HHH--HHHHHHTTCTTEEEEEECCCCSSSCCSHHHHHHT--------
T ss_pred HHHHHHHcCCCCEEEEEeCCCCCCc----chH-HHH--HHHHHhcCCCCeEEEEEeCCcccchhhHHHHHHc--------
Confidence 3444455678999999999 9988 432 343 6777774 468999999654 67777666
Q ss_pred CCC--CCCcEEEECCCCc
Q 003940 200 GGG--GWPLSVFLSPDLK 215 (784)
Q Consensus 200 g~~--G~P~~vfl~pdg~ 215 (784)
++. |+||++|+ ++|+
T Consensus 78 ~V~~~~~PTl~~f-~~G~ 94 (240)
T 2qc7_A 78 KLDKESYPVFYLF-RDGD 94 (240)
T ss_dssp TCCGGGCSEEEEE-ETTC
T ss_pred CCCCCCCCEEEEE-eCCC
Confidence 899 99999999 4565
No 230
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=97.22 E-value=0.0035 Score=70.50 Aligned_cols=86 Identities=10% Similarity=0.020 Sum_probs=59.7
Q ss_pred hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchH
Q 003940 543 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY 622 (784)
Q Consensus 543 tsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDy 622 (784)
|+..+.++.|||.|++++++. +..| ..++|+.|+++.+|..++--....+++| ...++.+
T Consensus 152 sd~a~~~AAalAaas~vfk~~--D~~y--------A~~~L~~A~~~~~fa~~~~g~~~~~~~Y--------~ss~~~D-- 211 (441)
T 1ia6_A 152 SDILSETSAALTLMYLNYKNI--DSAY--------ATKCLNAAKELYAMGKANQGVGNGQSFY--------QATSFGD-- 211 (441)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHSCSCCCCTTTS--------CCCCSHH--
T ss_pred cHHHHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcCCCCCCCCCC--------CCCCchh--
Confidence 345588999999999999762 1223 2678999999999998863111111111 1123333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003940 623 AFLISGLLDLYEFGSGTKWLVWAIELQ 649 (784)
Q Consensus 623 A~li~aLL~LYeaTgd~~yL~~A~~L~ 649 (784)
.++.|.++||.+|||+.||+.|++..
T Consensus 212 -E~~WAAa~Ly~aTgd~~Yl~~a~~~~ 237 (441)
T 1ia6_A 212 -DLAWAATWLYTATNDSTYITDAEQFI 237 (441)
T ss_dssp -HHHHHHHHHHHHHCCTHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45688999999999999999998754
No 231
>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.20 E-value=0.00087 Score=62.47 Aligned_cols=76 Identities=12% Similarity=0.225 Sum_probs=47.5
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~-pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
.+.+..+.+.++ |.| |+++||++|+.+.. +.+.++-.|..|.||.++. +++. ..+...+|+.++|+
T Consensus 17 ~~~~~~~i~~~~-vvv-f~~~~Cp~C~~~~~-------~L~~~~i~~~~vdid~~~~~~~~~----~~l~~~~g~~~vP~ 83 (130)
T 2cq9_A 17 VNQIQETISDNC-VVI-FSKTSCSYCTMAKK-------LFHDMNVNYKVVELDLLEYGNQFQ----DALYKMTGERTVPR 83 (130)
T ss_dssp HHHHHHHHHHSS-EEE-EECSSCSHHHHHHH-------HHHHHTCCCEEEETTTSTTHHHHH----HHHHHHHSSCCSSE
T ss_pred HHHHHHHHcCCc-EEE-EEcCCChHHHHHHH-------HHHHcCCCcEEEECcCCcCcHHHH----HHHHHHhCCCCcCE
Confidence 556666666554 555 99999999999864 3333455687776665522 3322 22223348899998
Q ss_pred EEEECCCCceecc
Q 003940 207 SVFLSPDLKPLMG 219 (784)
Q Consensus 207 ~vfl~pdg~pi~~ 219 (784)
.+ + +|+.+.+
T Consensus 84 l~-i--~G~~igg 93 (130)
T 2cq9_A 84 IF-V--NGTFIGG 93 (130)
T ss_dssp EE-E--TTEEEEE
T ss_pred EE-E--CCEEEcC
Confidence 75 4 6776643
No 232
>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*
Probab=97.20 E-value=0.00078 Score=64.40 Aligned_cols=76 Identities=12% Similarity=0.224 Sum_probs=48.5
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~-pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
.+.++.+.+.+ +|.| |+++||++|+.+.. +.+.++-.|..|.||.++. +++... +...+|+.++|+
T Consensus 39 ~~~~~~~i~~~-~Vvv-f~~~~Cp~C~~~k~-------~L~~~~i~~~~vdId~~~~~~~~~~~----L~~~~g~~tvP~ 105 (146)
T 2ht9_A 39 VNQIQETISDN-CVVI-FSKTSCSYCTMAKK-------LFHDMNVNYKVVELDLLEYGNQFQDA----LYKMTGERTVPR 105 (146)
T ss_dssp HHHHHHHHHHC-SEEE-EECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGCTTHHHHHHH----HHHHHSCCCSCE
T ss_pred HHHHHHHhcCC-CEEE-EECCCChhHHHHHH-------HHHHcCCCeEEEECccCcCCHHHHHH----HHHHhCCCCcCe
Confidence 56666666665 4555 99999999999864 3334555787777766522 332222 223348899998
Q ss_pred EEEECCCCceecc
Q 003940 207 SVFLSPDLKPLMG 219 (784)
Q Consensus 207 ~vfl~pdg~pi~~ 219 (784)
++ + +|+.+.+
T Consensus 106 if-i--~G~~igG 115 (146)
T 2ht9_A 106 IF-V--NGTFIGG 115 (146)
T ss_dssp EE-E--TTEEEES
T ss_pred EE-E--CCEEEeC
Confidence 75 3 6777654
No 233
>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}
Probab=97.16 E-value=0.0017 Score=63.79 Aligned_cols=43 Identities=23% Similarity=0.108 Sum_probs=30.3
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCC
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 182 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~e 182 (784)
.+|++++.|+..||++|+.|+.. + +++.+.+.++.+.+.++..
T Consensus 24 ~~~~~vv~f~d~~Cp~C~~~~~~-l--~~l~~~~~~~v~~~~~~~~ 66 (195)
T 3hd5_A 24 PGKIEVLEFFAYTCPHCAAIEPM-V--EDWAKTAPQDVVLKQVPIA 66 (195)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHH-H--HHHHHTCCTTEEEEEEECC
T ss_pred CCCeEEEEEECCCCccHHHhhHH-H--HHHHHHCCCCeEEEEEecc
Confidence 47899999999999999999852 2 3454444334555566554
No 234
>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A
Probab=97.14 E-value=0.0019 Score=64.18 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=19.1
Q ss_pred cCCcEEEEEcccCChh-hhhhhh
Q 003940 137 RDVPIFLSIGYSTCHW-CHVMEV 158 (784)
Q Consensus 137 e~KpI~l~~~~~wC~w-C~~Me~ 158 (784)
.||+|+|.|+++||+. |..+-.
T Consensus 40 ~Gk~vlv~F~at~C~~vC~~~~~ 62 (200)
T 2b7k_A 40 LGKFSIIYFGFSNCPDICPDELD 62 (200)
T ss_dssp TTSCEEEEEECTTCCSHHHHHHH
T ss_pred CCCEEEEEEECCCCcchhHHHHH
Confidence 5899999999999997 987543
No 235
>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*
Probab=97.05 E-value=0.0017 Score=57.30 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=43.5
Q ss_pred HHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcc---cEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCC
Q 003940 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW---FVSIKVDREER-PDVDKVYMTYVQALYGGGGW 204 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~---FV~VkvD~ee~-pdi~~~y~~~~q~~~g~~G~ 204 (784)
+-++...++++ ++.|+++||++|+.+.. . .+.++.. |..|.||.+.. ++.... +...+|..++
T Consensus 3 ~~~~~~i~~~~--v~~f~~~~C~~C~~~~~-~------L~~~~~~~~~~~~vdi~~~~~~~~~~~~----l~~~~g~~~v 69 (105)
T 1kte_A 3 AFVNSKIQPGK--VVVFIKPTCPFCRKTQE-L------LSQLPFKEGLLEFVDITATSDTNEIQDY----LQQLTGARTV 69 (105)
T ss_dssp HHHHHHCCTTC--EEEEECSSCHHHHHHHH-H------HHHSCBCTTSEEEEEGGGSTTHHHHHHH----HHHHHSCCCS
T ss_pred hHHHhhcccCC--EEEEEcCCCHhHHHHHH-H------HHHcCCCCCccEEEEccCCCCHHHHHHH----HHHHhCCCCc
Confidence 33455555554 45689999999998864 2 2233434 76666655421 222221 2223488999
Q ss_pred CcEEEECCCCceecc
Q 003940 205 PLSVFLSPDLKPLMG 219 (784)
Q Consensus 205 P~~vfl~pdg~pi~~ 219 (784)
|+.+ + +|+.+.+
T Consensus 70 P~i~-~--~g~~i~g 81 (105)
T 1kte_A 70 PRVF-I--GKECIGG 81 (105)
T ss_dssp CEEE-E--TTEEEES
T ss_pred CeEE-E--CCEEEec
Confidence 9964 4 5776643
No 236
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=97.01 E-value=0.0014 Score=62.63 Aligned_cols=99 Identities=17% Similarity=0.169 Sum_probs=51.7
Q ss_pred hcCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHH---------------HHHhc
Q 003940 136 KRDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY---------------VQALY 199 (784)
Q Consensus 136 ~e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~---------------~q~~~ 199 (784)
-.||+|+|.|+ ++||+.|...-. .|++- ..++-+.+++.|-|..+ .|+..+.|.+. .+. +
T Consensus 28 ~~Gk~vvl~f~~~~~c~~C~~e~~-~l~~~-~~~~~~~~~~~v~vs~d-~~~~~~~~~~~~~~~~p~l~D~~~~v~~~-y 103 (157)
T 4g2e_A 28 LKGKVVVLAFYPAAFTQVCTKEMC-TFRDS-MAKFNQVNAVVLGISVD-PPFSNKAFKEHNKLNFTILSDYNREVVKK-Y 103 (157)
T ss_dssp GTTSCEEEEECSCTTCCC-------CCSCG-GGGGGGCSSEEEEEESS-CHHHHHHHHHHTTCCSEEEECTTSHHHHH-T
T ss_pred HCCCeEEEEecCCCCCCccccchh-hcccc-cccccccCceEeeeccc-chhHHHHHHHHcCCcEEEEEcCCcHHHHH-c
Confidence 35899999998 999999986432 33321 12222345666656554 23333334321 111 1
Q ss_pred CC-------C----CCCcEEEECCCCceeccc-cccCCCCCCCcchHHHHHHHHH
Q 003940 200 GG-------G----GWPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 200 g~-------~----G~P~~vfl~pdg~pi~~~-tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
|+ . ..|+++++|++|++.+.. +..+. +.+.+-++++.|.
T Consensus 104 gv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~----~~~~~~eil~~l~ 154 (157)
T 4g2e_A 104 NVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPT----KEPPYDEIEKVVK 154 (157)
T ss_dssp TCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTT----CCCCHHHHHHHHH
T ss_pred CCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCC----CCCCHHHHHHHHH
Confidence 22 1 257889999999988753 22221 2345666665554
No 237
>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}
Probab=96.96 E-value=0.0018 Score=66.64 Aligned_cols=72 Identities=15% Similarity=0.078 Sum_probs=53.7
Q ss_pred HHHHHHH-hhcCCcEEEEEcccC--ChhhhhhhhcccCCHHHHHHHhc---c--cEEEEEcCCCCccHHHHHHHHHHHhc
Q 003940 128 EEAFAEA-RKRDVPIFLSIGYST--CHWCHVMEVESFEDEGVAKLLND---W--FVSIKVDREERPDVDKVYMTYVQALY 199 (784)
Q Consensus 128 ~eal~~A-k~e~KpI~l~~~~~w--C~wC~~Me~etf~d~eVa~~ln~---~--FV~VkvD~ee~pdi~~~y~~~~q~~~ 199 (784)
.+.|+.. ++-++||+|.|+++| |.+|+.|.. .++ ++++..++ . ...+++|.++.+++.+.|
T Consensus 14 ~~ql~~~~~~~~~pv~v~~~~~~~~c~~c~~~~~-~l~--ela~~~~~~~~~~~v~~~~vd~d~~~~~~~~~-------- 82 (243)
T 2hls_A 14 RRELRETLAEMVNPVEVHVFLSKSGCETCEDTLR-LMK--LFEEESPTRNGGKLLKLNVYYRESDSDKFSEF-------- 82 (243)
T ss_dssp HHHHHHHHTTCCSCEEEEEEECSSSCTTHHHHHH-HHH--HHHHHSCEETTEESEEEEEEETTTTHHHHHHT--------
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCCCCCchHHHHH-HHH--HHHHhccCCCCCceeEEEEecCCcCHHHHHhc--------
Confidence 4444333 566799999999999 999999964 333 56655321 1 556789999888887776
Q ss_pred CCCCCCcEEEE
Q 003940 200 GGGGWPLSVFL 210 (784)
Q Consensus 200 g~~G~P~~vfl 210 (784)
|+.++|+.+++
T Consensus 83 gv~~~Pt~~i~ 93 (243)
T 2hls_A 83 KVERVPTVAFL 93 (243)
T ss_dssp TCCSSSEEEET
T ss_pred CCCcCCEEEEE
Confidence 88899999998
No 238
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=96.93 E-value=0.00092 Score=64.43 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=20.2
Q ss_pred hcCCcEEEEEcccCChhhhhhhh
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEV 158 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~ 158 (784)
..+|++++.|+..||++|+.++.
T Consensus 20 ~~a~v~i~~f~d~~Cp~C~~~~~ 42 (175)
T 3gyk_A 20 PEGDVTVVEFFDYNCPYCRRAMA 42 (175)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHH
T ss_pred CCCCEEEEEEECCCCccHHHHHH
Confidence 45788899999999999999985
No 239
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Probab=96.93 E-value=0.00074 Score=56.94 Aligned_cols=67 Identities=21% Similarity=0.172 Sum_probs=40.3
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcC--CCCCCcEEEECCCCceecc
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYG--GGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g--~~G~P~~vfl~pdg~pi~~ 219 (784)
++.|+++||++|+.+.. .++. +++.. .++-.+.+|.++.+...+.+ ...+| +.++|+.+ + +|+.+.+
T Consensus 3 v~~f~~~~C~~C~~~~~-~l~~--l~~~~-~~i~~~~vdi~~~~~~~~~l----~~~~~~~~~~vP~i~-~--~g~~i~~ 71 (85)
T 1ego_A 3 TVIFGRSGCPYCVRAKD-LAEK--LSNER-DDFQYQYVDIRAEGITKEDL----QQKAGKPVETVPQIF-V--DQQHIGG 71 (85)
T ss_dssp EEEECCTTSTHHHHHHH-HHHH--HHHHH-SSCEEEEECHHHHTCCSHHH----HHHTCCCSCCSCEEE-E--TTEEEES
T ss_pred EEEEeCCCCCCHHHHHH-HHHH--HHhcC-CCceEEEEecccChHHHHHH----HHHhCCCCceeCeEE-E--CCEEEEC
Confidence 56799999999999874 3432 33222 35667778876543211111 11226 78999974 4 6777643
No 240
>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1
Probab=96.93 E-value=0.00082 Score=67.77 Aligned_cols=24 Identities=25% Similarity=0.612 Sum_probs=21.2
Q ss_pred hcCCcEEEEEcccCChhhhhhhhc
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVE 159 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~e 159 (784)
..+|++++.|+..||++|+.++.+
T Consensus 84 ~~~k~~vv~F~d~~Cp~C~~~~~~ 107 (211)
T 1t3b_A 84 KNEKHVVTVFMDITCHYCHLLHQQ 107 (211)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHTT
T ss_pred CCCCEEEEEEECCCCHhHHHHHHH
Confidence 367899999999999999999863
No 241
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=96.89 E-value=0.0031 Score=61.44 Aligned_cols=79 Identities=6% Similarity=-0.023 Sum_probs=47.1
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHHHH--------------HHhcC
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYV--------------QALYG 200 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~~~--------------q~~~g 200 (784)
.||+|+|.|+ ++||..|...-. .++ ++.+.+. +++..|-|..+. ++..+.|.+.. ...+|
T Consensus 50 ~Gk~vvl~f~~~~~c~~C~~el~-~l~--~l~~~~~~~~~~vv~Vs~D~-~~~~~~~~~~~~~~f~~l~D~~~~~~~~~g 125 (179)
T 3ixr_A 50 TNQWLVLYFYPKDNTPGSSTEGL-EFN--LLLPQFEQINATVLGVSRDS-VKSHDSFCAKQGFTFPLVSDSDAILCKAFD 125 (179)
T ss_dssp TTSEEEEEECSCTTSHHHHHHHH-HHH--HHHHHHHTTTEEEEEEESCC-HHHHHHHHHHHTCCSCEEECTTCHHHHHTT
T ss_pred CCCCEEEEEEcCCCCCchHHHHH-HHH--HHHHHHHHCCCEEEEEcCCC-HHHHHHHHHHcCCceEEEECCchHHHHHcC
Confidence 5899999998 999999986432 222 3344443 345555555543 33333332211 11123
Q ss_pred CCC------------CCcEEEECCCCceecc
Q 003940 201 GGG------------WPLSVFLSPDLKPLMG 219 (784)
Q Consensus 201 ~~G------------~P~~vfl~pdg~pi~~ 219 (784)
+.+ .|+++++|++|++++.
T Consensus 126 v~~~~~~~g~~~~~~~p~~~lID~~G~I~~~ 156 (179)
T 3ixr_A 126 VIKEKTMYGRQVIGIERSTFLIGPTHRIVEA 156 (179)
T ss_dssp CEEEECCC--CEEEECCEEEEECTTSBEEEE
T ss_pred CcccccccCcccCCcceEEEEECCCCEEEEE
Confidence 321 5899999999999865
No 242
>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0
Probab=96.88 E-value=0.0019 Score=63.41 Aligned_cols=38 Identities=11% Similarity=0.073 Sum_probs=26.7
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEE
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSI 177 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~V 177 (784)
.+|++++.|+..||++|+.++. ++ +++.+.+...++.+
T Consensus 24 ~~~~~i~~f~d~~Cp~C~~~~~-~l--~~l~~~~~~~v~~~ 61 (192)
T 3h93_A 24 PGKIEVVELFWYGCPHCYAFEP-TI--VPWSEKLPADVHFV 61 (192)
T ss_dssp TTSEEEEEEECTTCHHHHHHHH-HH--HHHHHTCCTTEEEE
T ss_pred CCCCEEEEEECCCChhHHHhhH-HH--HHHHHhCCCCeEEE
Confidence 4788999999999999999986 33 44554443333333
No 243
>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A
Probab=96.88 E-value=0.00048 Score=70.99 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=20.4
Q ss_pred hcCCcEEEEEcccCChhhhhhhhc
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVE 159 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~e 159 (784)
...|.+++.|+..||++|++++.+
T Consensus 95 ~~ak~~v~~F~D~~Cp~C~~~~~~ 118 (241)
T 1v58_A 95 KDAPVIVYVFADPFCPYCKQFWQQ 118 (241)
T ss_dssp TTCSEEEEEEECTTCHHHHHHHHH
T ss_pred CCCCeEEEEEECCCChhHHHHHHH
Confidence 356778999999999999999863
No 244
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0
Probab=96.83 E-value=0.0034 Score=60.06 Aligned_cols=96 Identities=14% Similarity=0.057 Sum_probs=54.0
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHHHHHH----------------h
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQA----------------L 198 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~~~q~----------------~ 198 (784)
.||+|+|.|+ +.||+.|...- |++.++.. +++..|-|..+ .++..+.|.+.... .
T Consensus 45 ~Gk~vvl~f~~~~~c~~C~~~~------~~l~~~~~~~~~~vv~is~d-~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 117 (166)
T 3p7x_A 45 AGKKKLISVVPSIDTGVCDQQT------RKFNSDASKEEGIVLTISAD-LPFAQKRWCASAGLDNVITLSDHRDLSFGEN 117 (166)
T ss_dssp TTSCEEEEECSCTTSHHHHHHH------HHHHHHSCTTTSEEEEEESS-CHHHHHHHHHHHTCSSCEEEECTTTCHHHHH
T ss_pred CCCcEEEEEECCCCCCccHHHH------HHHHHHhhcCCCEEEEEECC-CHHHHHHHHHHcCCCceEEccCCchhHHHHH
Confidence 5899999998 78999998632 23333332 24444444443 22222223221111 1
Q ss_pred cCCCC------CCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHH
Q 003940 199 YGGGG------WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 199 ~g~~G------~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
+|+.+ .|+++++|++|++++....... ...+.+-++|+.+.
T Consensus 118 ~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~~---~~~~~~~~il~~l~ 164 (166)
T 3p7x_A 118 YGVVMEELRLLARAVFVLDADNKVVYKEIVSEG---TDFPDFDAALAAYK 164 (166)
T ss_dssp HTCEETTTTEECCEEEEECTTCBEEEEEECSBT---TSCCCHHHHHHHHH
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEEcCCc---ccCCCHHHHHHHHh
Confidence 14333 7999999999999876211111 12356777777664
No 245
>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*
Probab=96.81 E-value=0.0044 Score=55.73 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=48.0
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
++.+++..++++ ++.|+++||++|+.+.. +.+.++-.|..|.||... |+- ......+...+|...+|+.
T Consensus 9 ~~~~~~~i~~~~--v~vy~~~~Cp~C~~~~~-------~L~~~~i~~~~~di~~~~-~~~-~~~~~~l~~~~g~~tvP~i 77 (113)
T 3rhb_A 9 EESIRKTVTENT--VVIYSKTWCSYCTEVKT-------LFKRLGVQPLVVELDQLG-PQG-PQLQKVLERLTGQHTVPNV 77 (113)
T ss_dssp HHHHHHHHHHSS--EEEEECTTCHHHHHHHH-------HHHHTTCCCEEEEGGGST-THH-HHHHHHHHHHHSCCSSCEE
T ss_pred HHHHHHHHhcCC--EEEEECCCChhHHHHHH-------HHHHcCCCCeEEEeecCC-CCh-HHHHHHHHHHhCCCCcCEE
Confidence 556666666666 45589999999998763 333345567777776531 111 1222333444588899998
Q ss_pred EEECCCCceecc
Q 003940 208 VFLSPDLKPLMG 219 (784)
Q Consensus 208 vfl~pdg~pi~~ 219 (784)
+ + +|+.+.+
T Consensus 78 f-i--~g~~igG 86 (113)
T 3rhb_A 78 F-V--CGKHIGG 86 (113)
T ss_dssp E-E--TTEEEES
T ss_pred E-E--CCEEEcC
Confidence 4 4 6776644
No 246
>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B
Probab=96.81 E-value=0.0011 Score=60.06 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=44.4
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
.+.+..+.+.++ ++.|+++||++|+.+.. .|+.-.+. +.+|..|.|| +.|+-... ...+...+|..++|+.
T Consensus 9 ~~~~~~~i~~~~--vv~f~~~~Cp~C~~~~~-~L~~~~~~---~~~~~~vdi~--~~~~~~~~-~~~l~~~~g~~~vP~v 79 (114)
T 2hze_A 9 EEFVQQRLANNK--VTIFVKYTCPFCRNALD-ILNKFSFK---RGAYEIVDIK--EFKPENEL-RDYFEQITGGKTVPRI 79 (114)
T ss_dssp HHHHHTTCCTTC--EEEEECTTCHHHHHHHH-HHTTSCBC---TTSEEEEEGG--GSSSHHHH-HHHHHHHHSCCSSCEE
T ss_pred HHHHHHHhccCC--EEEEEeCCChhHHHHHH-HHHHcCCC---cCceEEEEcc--CCCChHHH-HHHHHHHhCCCCcCEE
Confidence 555566655544 56799999999998864 44432211 0116555554 44421111 1112223488999976
Q ss_pred EEECCCCceecc
Q 003940 208 VFLSPDLKPLMG 219 (784)
Q Consensus 208 vfl~pdg~pi~~ 219 (784)
+ + +|+.+.+
T Consensus 80 ~-i--~g~~igg 88 (114)
T 2hze_A 80 F-F--GKTSIGG 88 (114)
T ss_dssp E-E--TTEEEES
T ss_pred E-E--CCEEEeC
Confidence 4 4 6777643
No 247
>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*
Probab=96.77 E-value=0.0037 Score=57.23 Aligned_cols=80 Identities=13% Similarity=0.223 Sum_probs=42.6
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhh-hhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVM-EVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~M-e~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
.+.++.+.+.++ ++.|+++||++|+.+ .. .+++-.. -+-.|..|.|| +.|+-. ...+.+...+|..++|+
T Consensus 15 ~~~~~~~i~~~~--Vvvf~~~~Cp~C~~alk~-~L~~~~~---~~i~~~~vdid--~~~~~~-~~~~~l~~~~g~~tvP~ 85 (118)
T 3c1r_A 15 IKHVKDLIAENE--IFVASKTYCPYCHAALNT-LFEKLKV---PRSKVLVLQLN--DMKEGA-DIQAALYEINGQRTVPN 85 (118)
T ss_dssp HHHHHHHHHHSS--EEEEECSSCHHHHHHHHH-HHTTSCC---CGGGEEEEEGG--GSTTHH-HHHHHHHHHHSCCSSCE
T ss_pred HHHHHHHHccCc--EEEEEcCCCcCHHHHHHH-HHHHcCC---CCCCeEEEECc--cCCChH-HHHHHHHHHhCCCCcCE
Confidence 445555555554 445999999999987 53 3322110 00235544444 444311 11222233348889997
Q ss_pred EEEECCCCceecc
Q 003940 207 SVFLSPDLKPLMG 219 (784)
Q Consensus 207 ~vfl~pdg~pi~~ 219 (784)
. |+ +|+.+.+
T Consensus 86 v-fi--~g~~igG 95 (118)
T 3c1r_A 86 I-YI--NGKHIGG 95 (118)
T ss_dssp E-EE--TTEEEES
T ss_pred E-EE--CCEEEEc
Confidence 6 44 5676643
No 248
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10
Probab=96.76 E-value=0.0028 Score=60.49 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=23.4
Q ss_pred CcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHH
Q 003940 205 PLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 205 P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
|+++++|++|++++....-.. ...+.+-++|+.|.
T Consensus 127 p~~~liD~~G~i~~~~~g~~~---~~~~~~~~~l~~l~ 161 (163)
T 1psq_A 127 RAVFVLDTDNTIRYVEYVDNI---NSEPNFEAAIAAAK 161 (163)
T ss_dssp CEEEEECTTCBEEEEEECSBT---TSCCCHHHHHHHHH
T ss_pred EEEEEEcCCCeEEEEEecCCc---CCCCCHHHHHHHHH
Confidence 999999999999876321111 12356677777665
No 249
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A*
Probab=96.75 E-value=0.033 Score=65.06 Aligned_cols=84 Identities=15% Similarity=0.157 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchH
Q 003940 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDY 622 (784)
Q Consensus 545 WNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~--~~~~~leDy 622 (784)
-.+.++.|||.|++++++. +..| ..++|+.|+++.+|..++--. .+ ...+.. ...++.
T Consensus 152 ~a~e~AAAlAaAS~vfk~~--D~~y--------A~~~L~~Ak~l~~fA~~~~~~--~~-----~~~~~~~Y~ss~~~--- 211 (614)
T 1g87_A 152 VCASTAASLASAAVVFKSS--DPTY--------AEKCISHAKNLFDMADKAKSD--AG-----YTAASGYYSSSSFY--- 211 (614)
T ss_dssp HHHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHHCCC--TT-----CCTTTTTSCCSCSH---
T ss_pred HHHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcCCC--CC-----CCcCcCCcCCCCch---
Confidence 3488899999999999862 1223 267899999999999887421 10 001110 112333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003940 623 AFLISGLLDLYEFGSGTKWLVWAIEL 648 (784)
Q Consensus 623 A~li~aLL~LYeaTgd~~yL~~A~~L 648 (784)
-.++.|.++||.+|||..||+.|++.
T Consensus 212 DEl~WAAawLy~ATgd~~Yl~~a~~~ 237 (614)
T 1g87_A 212 DDLSWAAVWLYLATNDSTYLDKAESY 237 (614)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 34588999999999999999999863
No 250
>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}
Probab=96.71 E-value=0.0018 Score=65.87 Aligned_cols=80 Identities=6% Similarity=-0.095 Sum_probs=45.7
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHHHH-------------------
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYV------------------- 195 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~~~------------------- 195 (784)
.||+|+|.|+ ++||+.|...-. .|+ ++.+.+. +++..|-|..+. ++..+.|.+..
T Consensus 55 ~Gk~vvl~F~patwCp~C~~e~p-~l~--~l~~~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~ 130 (221)
T 2c0d_A 55 GQKYCCLLFYPLNYTFVCPTEII-EFN--KHIKDFENKNVELLGISVDS-VYSHLAWKNMPIEKGGIGNVEFTLVSDINK 130 (221)
T ss_dssp TTCEEEEEECCCCTTTCCHHHHH-HHH--HTHHHHHHTTEEEEEEESSC-HHHHHHHHHSCGGGTCCCSCSSEEEECTTS
T ss_pred CCCeEEEEEEcCCCCCchHHHHH-HHH--HHHHHHHHCCCEEEEEeCCC-HHHHHHHHHHhhhhcCccCCceEEEECCch
Confidence 5899999999 999999986432 121 2222232 334444444332 22122222111
Q ss_pred --HHhcCC-----CCCCcEEEECCCCceeccc
Q 003940 196 --QALYGG-----GGWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 196 --q~~~g~-----~G~P~~vfl~pdg~pi~~~ 220 (784)
...+|+ ...|+++++|++|++++..
T Consensus 131 ~~~~~ygv~~~~g~~~P~~~lID~~G~I~~~~ 162 (221)
T 2c0d_A 131 DISKNYNVLYDNSFALRGLFIIDKNGCVRHQT 162 (221)
T ss_dssp HHHHHTTCEETTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHcCCcccCCCccceEEEECCCCeEEEEE
Confidence 111244 2579999999999998763
No 251
>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A
Probab=96.70 E-value=0.0028 Score=65.92 Aligned_cols=97 Identities=13% Similarity=-0.104 Sum_probs=53.3
Q ss_pred cCCc-EEEEEcccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHH---------------------
Q 003940 137 RDVP-IFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (784)
Q Consensus 137 e~Kp-I~l~~~~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~--------------------- 193 (784)
.||+ ||++|.++||..|..+-. .|+ ++.+.+. +++..|-|+.+.. .....+.+
T Consensus 32 ~GK~vVL~~fpa~~CpvC~tEl~-~l~--~l~~ef~~~gv~VI~VS~Ds~-~~~~~w~~~~~~~~~~~i~fPil~D~~~~ 107 (249)
T 3a2v_A 32 QGKWFVLFSHPADFTPVCTTEFV-SFA--RRYEDFQRLGVDLIGLSVDSV-FSHIKWKEWIERHIGVRIPFPIIADPQGT 107 (249)
T ss_dssp TTCEEEEECCSCTTCHHHHHHHH-HHH--HTHHHHHHTTEEEEEEESSCH-HHHHHHHHHHHHHTCCCCCSCEEECTTSH
T ss_pred CCCEEEEEEEcCCCCcChHHHHH-HHH--HHHHHHHhCCcEEEEEECCCH-HHHHHHHHHHHHhcCCCCceeEEECCchH
Confidence 5786 566889999999997543 332 2223332 3555555555421 11111111
Q ss_pred HHHHhcCCC-------CCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHH
Q 003940 194 YVQALYGGG-------GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 194 ~~q~~~g~~-------G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
... .+|+. ++|+++++||+|++.....|-.+.+ ..+-++|+.|.
T Consensus 108 ia~-~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~g----r~~~Ellr~I~ 158 (249)
T 3a2v_A 108 VAR-RLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELG----RLVDEILRIVK 158 (249)
T ss_dssp HHH-HHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBC----CCHHHHHHHHH
T ss_pred HHH-HhCCccccCCCcccceEEEECCCCeEEEEEecCCccc----chhHHHHHHHH
Confidence 111 12443 8999999999999987644322211 13555555554
No 252
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=96.68 E-value=0.0025 Score=61.52 Aligned_cols=79 Identities=22% Similarity=0.251 Sum_probs=46.6
Q ss_pred cCCcEEEEEcccCCh-hhhhhhhcccCCHHHHHHHh---cc--cEEEEEcCCCCccHHHHHHH-----------------
Q 003940 137 RDVPIFLSIGYSTCH-WCHVMEVESFEDEGVAKLLN---DW--FVSIKVDREERPDVDKVYMT----------------- 193 (784)
Q Consensus 137 e~KpI~l~~~~~wC~-wC~~Me~etf~d~eVa~~ln---~~--FV~VkvD~ee~pdi~~~y~~----------------- 193 (784)
.||+|+|.|+++||+ .|...-.. ++ ++.+.+. ++ +|.|-+|..+.|+..+.|.+
T Consensus 27 ~Gk~vll~F~~t~C~~~C~~~~~~-l~--~~~~~~~~~~~~~~vv~is~d~~d~~~~~~~~~~~~~~~~~~w~~l~~~~~ 103 (170)
T 3me7_A 27 KGKPIILSPIYTHCRAACPLITKS-LL--KVIPKLGTPGKDFWVITFTFDPKDTLEDIKRFQKEYGIDGKGWKVVKAKTS 103 (170)
T ss_dssp TTSCEEEEEECTTCCSHHHHHHHH-HH--TTHHHHCCBTTTBEEEEEECCTTCCHHHHHHHHHHTTCCSSSEEEEEESSH
T ss_pred CCCEEEEEEECCCCCchhHHHHHH-HH--HHHHHhhhcCCceEEEEEECCCCCCHHHHHHHHHHcCCCCCCeEEEeCCCH
Confidence 389999999999997 69875442 22 3444442 23 55555563233333233321
Q ss_pred -----HHHHhcC---------CCCCCcEEEECCCCceecc
Q 003940 194 -----YVQALYG---------GGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 194 -----~~q~~~g---------~~G~P~~vfl~pdg~pi~~ 219 (784)
..+.+ | ....|+++++||+|+++..
T Consensus 104 ~~~~~~~~~~-g~~~~~~~~~~~~~~~~~lID~~G~i~~~ 142 (170)
T 3me7_A 104 EDLFKLLDAI-DFRFMTAGNDFIHPNVVVVLSPELQIKDY 142 (170)
T ss_dssp HHHHHHHHHT-TCCCEEETTEEECCCEEEEECTTSBEEEE
T ss_pred HHHHHHHHHC-CeEEecCCCccccCceEEEECCCCeEEEE
Confidence 12211 2 2345889999999998754
No 253
>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1
Probab=96.67 E-value=0.0033 Score=52.56 Aligned_cols=60 Identities=15% Similarity=0.168 Sum_probs=38.3
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~ 218 (784)
++.|+++||++|+.+.. .++ .++-.|. ++|.++.|++.+.+. . +|+.++|+.+ . +|+.+.
T Consensus 3 v~~f~~~~C~~C~~~~~-~l~------~~~i~~~--~vdi~~~~~~~~~~~----~-~g~~~vP~~~-~--~g~~~~ 62 (81)
T 1h75_A 3 ITIYTRNDCVQCHATKR-AME------NRGFDFE--MINVDRVPEAAEALR----A-QGFRQLPVVI-A--GDLSWS 62 (81)
T ss_dssp EEEEECTTCHHHHHHHH-HHH------HTTCCCE--EEETTTCHHHHHHHH----H-TTCCSSCEEE-E--TTEEEE
T ss_pred EEEEcCCCChhHHHHHH-HHH------HCCCCeE--EEECCCCHHHHHHHH----H-hCCCccCEEE-E--CCEEEe
Confidence 46689999999999864 222 2333454 566666676554332 2 4889999984 4 566653
No 254
>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*
Probab=96.57 E-value=0.0033 Score=53.26 Aligned_cols=65 Identities=12% Similarity=-0.036 Sum_probs=42.0
Q ss_pred cEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCC-----CCCCcEEEECCCC
Q 003940 140 PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGG-----GGWPLSVFLSPDL 214 (784)
Q Consensus 140 pI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~-----~G~P~~vfl~pdg 214 (784)
+.++.|+++||++|+.+.. +.+.++-.|-.+.||..+.+...+. +...+|. .++|+.++ +|
T Consensus 4 m~v~ly~~~~Cp~C~~~~~-------~L~~~~i~~~~~~vd~~~~~~~~~e----l~~~~g~~~~~~~~vP~i~i---~g 69 (89)
T 3msz_A 4 MKVKIYTRNGCPYCVWAKQ-------WFEENNIAFDETIIDDYAQRSKFYD----EMNQSGKVIFPISTVPQIFI---DD 69 (89)
T ss_dssp CCEEEEECTTCHHHHHHHH-------HHHHTTCCCEEEECCSHHHHHHHHH----HHHTTTCCSSCCCSSCEEEE---TT
T ss_pred eEEEEEEcCCChhHHHHHH-------HHHHcCCCceEEEeecCCChhHHHH----HHHHhCCCCCCCCccCEEEE---CC
Confidence 3466788999999999753 3344555687777877644332222 2234477 89999865 67
Q ss_pred ceec
Q 003940 215 KPLM 218 (784)
Q Consensus 215 ~pi~ 218 (784)
+.+.
T Consensus 70 ~~i~ 73 (89)
T 3msz_A 70 EHIG 73 (89)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 7664
No 255
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=96.54 E-value=0.037 Score=60.90 Aligned_cols=131 Identities=7% Similarity=-0.124 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHhh-hhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEE-E-Eec----------CCC
Q 003940 546 NGLVISSFARASKILK-SEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQ-H-SFR----------NGP 612 (784)
Q Consensus 546 Nal~I~ALa~a~~~~~-d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~-~-~~~----------dg~ 612 (784)
-|.+ ..|+.++.... + +.+++.++++.+++.+...++++|.++ . ..+ +..
T Consensus 209 aGi~-~~L~~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~g~~wp~g~~~~~~~~~~~~~~~~ 271 (409)
T 2g0d_A 209 AGVG-CILAYAHIKGYSN----------------EASLSALQKIIFIYEKFELERKKQFLWKDGLVADELKKEKVIREAS 271 (409)
T ss_dssp HHHH-HHHHHHHHHTCCC----------------HHHHHHHHHHHHHHHHHCCCGGGTTCCCSEECHHHHHHTSCCSCCS
T ss_pred HHHH-HHHHHHHHhCCCC----------------hhHHHHHHHHHHHHHHHHhcCCCCCcCCCccccHhhhcccccccCC
Confidence 4444 67777775432 3 789999999999998776544445421 1 011 112
Q ss_pred CCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHH
Q 003940 613 SKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSV 692 (784)
Q Consensus 613 ~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv 692 (784)
....++...-+=.+.+++.+|++++|++|++.|++..+.+.+. ++... +...--|.+=
T Consensus 272 ~~~~~WChG~~Gi~~~l~~~~~~~~d~~~~~~a~~~~~~~~~~------~~~~~----------------~~~LCHG~aG 329 (409)
T 2g0d_A 272 FIRDAWCYGGPGISLLYLYGGLALDNDYFVDKAEKILESAMQR------KLGID----------------SYMICHGYSG 329 (409)
T ss_dssp CCCCCSSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------CTTCC----------------SCCTTTSHHH
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh------ccCCC----------------CCCCCChHHH
Confidence 2345666777778899999999999999999999998888765 11000 1112235555
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHH
Q 003940 693 SVINLVRLASIVAGSKSDYYRQNAEH 718 (784)
Q Consensus 693 ~a~~L~rL~~lt~~~~~~~y~e~A~~ 718 (784)
.+..|+++++.+++ ++|.++|.+
T Consensus 330 ~~~~l~~l~~~~~~---~~~~~~a~~ 352 (409)
T 2g0d_A 330 LIEICSLFKRLLNT---KKFDSYMEE 352 (409)
T ss_dssp HHHHHHHHHHHHCC---CTTHHHHHH
T ss_pred HHHHHHHHHHHhCC---HHHHHHHHH
Confidence 67778899999986 578888876
No 256
>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}
Probab=96.45 E-value=0.0078 Score=53.35 Aligned_cols=68 Identities=24% Similarity=0.371 Sum_probs=42.6
Q ss_pred EEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003940 141 IFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (784)
Q Consensus 141 I~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~ 218 (784)
-++.|+++||++|+.+.. +.+.++-.|..+.||..+ ++-...+...+...+|..++|+.++ + +|+.+.
T Consensus 23 ~v~ly~~~~Cp~C~~ak~-------~L~~~~i~y~~vdI~~~~-~~~~~~~~~~l~~~~g~~~vP~l~i-~-~~~~ig 90 (103)
T 3nzn_A 23 KVIMYGLSTCVWCKKTKK-------LLTDLGVDFDYVYVDRLE-GKEEEEAVEEVRRFNPSVSFPTTII-N-DEKAIV 90 (103)
T ss_dssp CEEEEECSSCHHHHHHHH-------HHHHHTBCEEEEEGGGCC-HHHHHHHHHHHHHHCTTCCSCEEEE-T-TTEEEE
T ss_pred eEEEEcCCCCchHHHHHH-------HHHHcCCCcEEEEeeccC-cccHHHHHHHHHHhCCCCccCEEEE-C-CCEEEE
Confidence 355689999999999863 334456668777777642 2222223333344568999999876 2 235553
No 257
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A*
Probab=96.43 E-value=0.033 Score=65.01 Aligned_cols=85 Identities=13% Similarity=0.093 Sum_probs=58.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCC----CCcc
Q 003940 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAP----GFLD 620 (784)
Q Consensus 545 WNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~----~~le 620 (784)
-.+.++.|||.|++++++. +..| ..++|+.|+++.+|..++- |. +.++.. .. ....
T Consensus 152 ~a~~~AAAlAaAS~vfk~~--D~~y--------A~~~L~~Ak~~~~fA~~~~-----g~----y~~~~~-~~~~Y~s~s~ 211 (605)
T 1tf4_A 152 VAAETAAAMAASSIVFADD--DPAY--------AATLVQHAKQLYTFADTYR-----GV----YSDCVP-AGAFYNSWSG 211 (605)
T ss_dssp HHHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHSC-----CC----GGGTST-THHHHCCSSC
T ss_pred HHHHHHHHHHHHHhhcccc--CHHH--------HHHHHHHHHHHHHHHHHcC-----CC----cCCCCC-ccccccCCCC
Confidence 3488899999999999852 1222 2678999999999998752 11 111111 10 0012
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003940 621 DYAFLISGLLDLYEFGSGTKWLVWAIELQ 649 (784)
Q Consensus 621 DyA~li~aLL~LYeaTgd~~yL~~A~~L~ 649 (784)
..-.++.|.++||.+|||+.||+.|++..
T Consensus 212 ~~DEl~WAAawLy~ATgd~~Yl~~a~~~~ 240 (605)
T 1tf4_A 212 YQDELVWGAYWLYKATGDDSYLAKAEYEY 240 (605)
T ss_dssp SHHHHHHHHHHHHHHHCCHHHHHHHHHHG
T ss_pred CchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 23467889999999999999999998743
No 258
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum}
Probab=96.42 E-value=0.03 Score=65.43 Aligned_cols=86 Identities=12% Similarity=0.057 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchHH
Q 003940 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYA 623 (784)
Q Consensus 546 Nal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~--~~~~~leDyA 623 (784)
.+.++.|||.|++++++. +..| ..++|+.|+++.+|..++- |.+......+.. ...++.+
T Consensus 219 a~~~AAAlAaAS~vfk~~--D~~y--------A~~~L~~Ak~~~~fA~~~~-----~~y~~~~~~~~~~Y~ss~~~D--- 280 (611)
T 2yik_A 219 ISATAASLAINYMNFKDT--DPQY--------AAKSLDYAKALFDFAEKNP-----KGVVQGEDGPKGYYGSSKWQD--- 280 (611)
T ss_dssp HHHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHSC-----CCCCCGGGTTTTTSCCCCSHH---
T ss_pred HHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHHcC-----CcccCCCcccCcCCCCCCccc---
Confidence 378899999999999762 1223 2678999999999998763 111100111111 1123333
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003940 624 FLISGLLDLYEFGSGTKWLVWAIELQ 649 (784)
Q Consensus 624 ~li~aLL~LYeaTgd~~yL~~A~~L~ 649 (784)
.++.|.++||.+|||+.|++.|++..
T Consensus 281 El~WAAawLy~ATgd~~Yl~~a~~~~ 306 (611)
T 2yik_A 281 DYCWAAAWLYLATQNEHYLDEAFKYY 306 (611)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45789999999999999999998754
No 259
>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0
Probab=96.39 E-value=0.01 Score=53.71 Aligned_cols=76 Identities=11% Similarity=0.092 Sum_probs=47.0
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCCCc
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~-pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
.+.+++..++++ |. -|+.+||++|+.+.. +.+.++-.|..+.||..+. +++. +.+...+|...+|.
T Consensus 7 ~~~~~~~i~~~~-v~-vy~~~~Cp~C~~ak~-------~L~~~~i~~~~~dvd~~~~~~~~~----~~l~~~~g~~tvP~ 73 (114)
T 3h8q_A 7 RRHLVGLIERSR-VV-IFSKSYCPHSTRVKE-------LFSSLGVECNVLELDQVDDGARVQ----EVLSEITNQKTVPN 73 (114)
T ss_dssp HHHHHHHHHHCS-EE-EEECTTCHHHHHHHH-------HHHHTTCCCEEEETTTSTTHHHHH----HHHHHHHSCCSSCE
T ss_pred HHHHHHHhccCC-EE-EEEcCCCCcHHHHHH-------HHHHcCCCcEEEEecCCCChHHHH----HHHHHHhCCCccCE
Confidence 456666666666 33 389999999998763 2233444677776665432 2222 22233358889999
Q ss_pred EEEECCCCceecc
Q 003940 207 SVFLSPDLKPLMG 219 (784)
Q Consensus 207 ~vfl~pdg~pi~~ 219 (784)
.++ +|+.+.|
T Consensus 74 vfi---~g~~igG 83 (114)
T 3h8q_A 74 IFV---NKVHVGG 83 (114)
T ss_dssp EEE---TTEEEES
T ss_pred EEE---CCEEEeC
Confidence 866 6776654
No 260
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=96.36 E-value=0.013 Score=52.16 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCCcEEEEEcc-----cCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGY-----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~-----~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~ 202 (784)
.+-++...+.+ +|.| |+. +||++|+.+.. .| +.++-.|.. +|+++.|++.+.+ ...+|..
T Consensus 7 ~~~~~~~i~~~-~vvv-f~~g~~~~~~C~~C~~~~~-~L------~~~~i~~~~--vdi~~~~~~~~~l----~~~~g~~ 71 (105)
T 2yan_A 7 EERLKVLTNKA-SVML-FMKGNKQEAKCGFSKQILE-IL------NSTGVEYET--FDILEDEEVRQGL----KAYSNWP 71 (105)
T ss_dssp HHHHHHHHTSS-SEEE-EESBCSSSBCTTHHHHHHH-HH------HHHTCCCEE--EEGGGCHHHHHHH----HHHHTCC
T ss_pred HHHHHHHhccC-CEEE-EEecCCCCCCCccHHHHHH-HH------HHCCCCeEE--EECCCCHHHHHHH----HHHHCCC
Confidence 34455555555 5666 444 99999998763 23 223334554 4555556544333 2234888
Q ss_pred CCCcEEEECCCCceecc
Q 003940 203 GWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 203 G~P~~vfl~pdg~pi~~ 219 (784)
++|+.+ + +|+.+.+
T Consensus 72 ~vP~v~-i--~g~~igg 85 (105)
T 2yan_A 72 TYPQLY-V--KGELVGG 85 (105)
T ss_dssp SSCEEE-E--TTEEEEC
T ss_pred CCCeEE-E--CCEEEeC
Confidence 999874 4 5776654
No 261
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}
Probab=96.28 E-value=0.011 Score=56.74 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=17.5
Q ss_pred cCCcEEEEEc-ccCChhhhhh
Q 003940 137 RDVPIFLSIG-YSTCHWCHVM 156 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~M 156 (784)
.||+++|.|+ ++||+.|...
T Consensus 46 ~gk~vvl~f~~~~~C~~C~~~ 66 (171)
T 2yzh_A 46 KDVVQVIITVPSLDTPVCETE 66 (171)
T ss_dssp CSSEEEEEECSCTTSHHHHHH
T ss_pred CCCeEEEEEECCCCCCchHHH
Confidence 4899999998 8999999864
No 262
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}
Probab=96.27 E-value=0.017 Score=58.57 Aligned_cols=40 Identities=10% Similarity=0.057 Sum_probs=26.3
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEc
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVD 180 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD 180 (784)
.||+|+|.|+|+||+.|+.|. .| .++.+.+. +.|+.|=|.
T Consensus 55 ~GKvvll~FwAt~C~~c~e~p--~L--~~l~~~~~~~g~~Vlgvs 95 (215)
T 2i3y_A 55 VGKHILFVNVATYCGLTAQYP--EL--NALQEELKPYGLVVLGFP 95 (215)
T ss_dssp TTSEEEEEEECSSSGGGGGHH--HH--HHHHHHHGGGTEEEEEEE
T ss_pred CCCEEEEEEeCCCCCChHhHH--HH--HHHHHHhccCCeEEEEEE
Confidence 689999999999999997543 22 23333332 345555554
No 263
>3hz8_A Thiol:disulfide interchange protein DSBA; thiol-oxidoreductase, disulfide bond; 1.45A {Neisseria meningitidis MC58} PDB: 3dvw_A 3a3t_A
Probab=96.25 E-value=0.014 Score=57.68 Aligned_cols=42 Identities=17% Similarity=0.033 Sum_probs=28.9
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcC
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR 181 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ 181 (784)
.+|++++.|+..||++|+.|+.. + +++.+.+.++++..+++.
T Consensus 23 ~~~v~vv~f~d~~Cp~C~~~~~~-l--~~~~~~~~~~v~~~~~p~ 64 (193)
T 3hz8_A 23 AGKVEVLEFFGYFCPHCAHLEPV-L--SKHAKSFKDDMYLRTEHV 64 (193)
T ss_dssp TTSEEEEEEECTTCHHHHHHHHH-H--HHHHTTCCTTEEEEEEEC
T ss_pred CCCcEEEEEECCCChhHHHHHHH-H--HHHHHHCCCCeEEEEecC
Confidence 36889999999999999999852 2 344443333455555554
No 264
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*
Probab=96.21 E-value=0.012 Score=48.88 Aligned_cols=62 Identities=16% Similarity=0.225 Sum_probs=38.2
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
++.|+++||++|+.+.. .+ +.++-.|..|.|| +.++....+.+ .+|..++|+.++ +|+.+.+
T Consensus 3 i~~y~~~~C~~C~~~~~-~l------~~~~i~~~~~~i~--~~~~~~~~~~~----~~~~~~vP~l~~---~g~~i~g 64 (82)
T 1fov_A 3 VEIYTKETCPYCHRAKA-LL------SSKGVSFQELPID--GNAAKREEMIK----RSGRTTVPQIFI---DAQHIGG 64 (82)
T ss_dssp EEEEECSSCHHHHHHHH-HH------HHHTCCCEEEECT--TCSHHHHHHHH----HHSSCCSCEEEE---TTEEEES
T ss_pred EEEEECCCChhHHHHHH-HH------HHCCCCcEEEECC--CCHHHHHHHHH----HhCCCCcCEEEE---CCEEEeC
Confidence 45689999999998763 22 2233356655554 44554443322 248899999853 6776643
No 265
>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}
Probab=96.19 E-value=0.013 Score=51.72 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=40.5
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccE-EEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFV-SIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV-~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
++-++.+||+||++..+ +|+++=| ...+|+++.|+..+.+. +...|...+|+.+| +||+.+.+
T Consensus 6 I~vYs~~~Cp~C~~aK~----------~L~~~gi~y~~idi~~d~~~~~~~~---~~~~G~~tVP~I~i--~Dg~~l~~ 69 (92)
T 2lqo_A 6 LTIYTTSWCGYCLRLKT----------ALTANRIAYDEVDIEHNRAAAEFVG---SVNGGNRTVPTVKF--ADGSTLTN 69 (92)
T ss_dssp EEEEECTTCSSHHHHHH----------HHHHTTCCCEEEETTTCHHHHHHHH---HHSSSSSCSCEEEE--TTSCEEES
T ss_pred EEEEcCCCCHhHHHHHH----------HHHhcCCceEEEEcCCCHHHHHHHH---HHcCCCCEeCEEEE--eCCEEEeC
Confidence 45678999999998653 3443322 23467777777655442 22347788998765 67777654
No 266
>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A
Probab=96.19 E-value=0.0067 Score=65.27 Aligned_cols=70 Identities=10% Similarity=0.051 Sum_probs=52.2
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCC--CCccHHHHHHHHHHHhcCCCC--CCcEEEE
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE--ERPDVDKVYMTYVQALYGGGG--WPLSVFL 210 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~e--e~pdi~~~y~~~~q~~~g~~G--~P~~vfl 210 (784)
.+..++++|.|+++||..|+.+.. .|+ ++++.+...+..+.||.+ +.+.+.+.| |+.+ +|+.+++
T Consensus 132 ~~~~~~~~v~F~~~~~~~~~~~~~-~~~--~~A~~~~~~i~f~~vd~~~~~~~~~~~~f--------gi~~~~~P~~~~~ 200 (361)
T 3uem_A 132 GGEIKTHILLFLPKSVSDYDGKLS-NFK--TAAESFKGKILFIFIDSDHTDNQRILEFF--------GLKKEECPAVRLI 200 (361)
T ss_dssp SCSCCEEEEEECCSSSSSHHHHHH-HHH--HHHGGGTTTCEEEEECTTSGGGHHHHHHT--------TCCTTTCSEEEEE
T ss_pred cCCCCcEEEEEEeCCchhHHHHHH-HHH--HHHHHccCceEEEEecCChHHHHHHHHHc--------CCCccCCccEEEE
Confidence 344567899999999999998874 343 677777777888999988 455555444 7766 9999999
Q ss_pred CCCCc
Q 003940 211 SPDLK 215 (784)
Q Consensus 211 ~pdg~ 215 (784)
+.++.
T Consensus 201 ~~~~~ 205 (361)
T 3uem_A 201 TLEEE 205 (361)
T ss_dssp ECC--
T ss_pred EcCCc
Confidence 87543
No 267
>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10
Probab=96.16 E-value=0.01 Score=56.00 Aligned_cols=76 Identities=12% Similarity=0.085 Sum_probs=42.7
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHhc--ccEEEEEcCCCCccHHHHHHHH--------------HHHhc
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDREERPDVDKVYMTY--------------VQALY 199 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln~--~FV~VkvD~ee~pdi~~~y~~~--------------~q~~~ 199 (784)
.+|+|+|.|+ ++||+.|...-. .|+ ++.+.+.+ .+|.|-+| .++..+.|.+. +...+
T Consensus 34 k~~~vvl~f~~~~~c~~C~~~~~-~l~--~~~~~~~~~~~vv~is~d---~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~ 107 (159)
T 2a4v_A 34 NNRVVVFFVYPRASTPGSTRQAS-GFR--DNYQELKEYAAVFGLSAD---SVTSQKKFQSKQNLPYHLLSDPKREFIGLL 107 (159)
T ss_dssp HCSEEEEEECSSSSSHHHHHHHH-HHH--HHHHHHTTTCEEEEEESC---CHHHHHHHHHHHTCSSEEEECTTCHHHHHH
T ss_pred CCCeEEEEEcCCCCCCCHHHHHH-HHH--HHHHHHHhCCcEEEEeCC---CHHHHHHHHHHhCCCceEEECCccHHHHHh
Confidence 3458999986 999999996432 222 33333332 35555554 23222223211 11113
Q ss_pred CCCCCC------cEEEECCCCceecc
Q 003940 200 GGGGWP------LSVFLSPDLKPLMG 219 (784)
Q Consensus 200 g~~G~P------~~vfl~pdg~pi~~ 219 (784)
|+.+.| +++++ ++|++++.
T Consensus 108 gv~~~p~~g~~~~~~li-~~G~i~~~ 132 (159)
T 2a4v_A 108 GAKKTPLSGSIRSHFIF-VDGKLKFK 132 (159)
T ss_dssp TCBSSSSSCBCCEEEEE-ETTEEEEE
T ss_pred CCcccccCCccceEEEE-cCCEEEEE
Confidence 666666 77888 99998865
No 268
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A*
Probab=96.12 E-value=0.18 Score=57.08 Aligned_cols=120 Identities=8% Similarity=0.018 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEE--ecCCCCCC--------CCC---cchH---HHHHHHHHHHHHHcCCHHHH
Q 003940 579 KEYMEVAESAASFIRRHLYDEQTHRLQHS--FRNGPSKA--------PGF---LDDY---AFLISGLLDLYEFGSGTKWL 642 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~~G~l~~~--~~dg~~~~--------~~~---leDy---A~li~aLL~LYeaTgd~~yL 642 (784)
+++++.|+++++-..........|..-.. +..+.... .++ ...| -.+|+.+.-||++|||+.|+
T Consensus 313 ~~~~~~a~~l~~tC~~~y~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~LRPE~iES~fylyR~TgD~~yr 392 (475)
T 2ri9_A 313 QDFIDFGLELVDGCEATYNSTLTKIGPDSWGWDPKKVPSDQKEFYEKAGFYISSGSYVLRPEVIESFYYAHRVTGKEIYR 392 (475)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSCCCSEEECCTTCCCGGGHHHHHHHSCEEEECCBCSCCHHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCcEEEeecCcccccccccccCCCceecccccCCChHHHHHHHHHHHHhCCHHHH
Confidence 78999999998877554433223432222 11111100 000 0112 26899999999999999999
Q ss_pred HHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCC
Q 003940 643 VWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (784)
Q Consensus 643 ~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~ 706 (784)
+++-++++.+..+..-+ .||-.-. +|........++..+|- .+++-|-=|+.+..+
T Consensus 393 ~~gw~~f~ai~k~~rt~--~G~a~i~----dV~~~~~~~~~D~meSF--~laETLKYlYLLFsd 448 (475)
T 2ri9_A 393 DWVWNAFVAINSTCRTD--SGFAAVS----DVNKANGGSKYDNQESF--LFAEVMKYSYLAHSE 448 (475)
T ss_dssp HHHHHHHHHHHHHTBCS--SSBCCBS----CTTSGGGSSBBSCCCTH--HHHTHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHccc--cCCcccc----cccCCCCCCcCCccchH--HHHHHHHHHHhcccC
Confidence 99999999999988543 3442211 11110102224445554 577777777777765
No 269
>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}
Probab=96.10 E-value=0.0067 Score=60.95 Aligned_cols=79 Identities=6% Similarity=-0.063 Sum_probs=45.1
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHH---------------------
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMT--------------------- 193 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~--------------------- 193 (784)
.||+|+|.|+ ++||+.|...-. .|+ ++.+.+. +++..|-|..+. ++..+.|.+
T Consensus 47 ~Gk~vvl~F~pat~C~~C~~e~~-~l~--~l~~~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~g~~~~~fp~l~D~~~ 122 (211)
T 2pn8_A 47 RGKYLVFFFYPLDFTFVCPTEII-AFG--DRLEEFRSINTEVVACSVDS-QFTHLAWINTPRRQGGLGPIRIPLLSDLTH 122 (211)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHH-HHH--HTHHHHHTTTEEEEEEESSC-HHHHHHHHTSCGGGTCCCSCSSCEEECTTS
T ss_pred CCCeEEEEEECCCCCCCCHHHHH-HHH--HHHHHHHHCCCEEEEEECCC-HHHHHHHHHHhhhccCccCCceEEEECCch
Confidence 5899999999 999999986432 222 2222232 234444443321 221111211
Q ss_pred -HHHHhcCCC------CCCcEEEECCCCceeccc
Q 003940 194 -YVQALYGGG------GWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 194 -~~q~~~g~~------G~P~~vfl~pdg~pi~~~ 220 (784)
..+. +|+. ++|+++++|++|++++..
T Consensus 123 ~~~~~-ygv~~~~~g~~~p~~~lID~~G~I~~~~ 155 (211)
T 2pn8_A 123 QISKD-YGVYLEDSGHTLRGLFIIDDKGILRQIT 155 (211)
T ss_dssp HHHHH-TTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHH-cCCcccCCCcccceEEEECCCCEEEEEE
Confidence 1111 2442 589999999999998764
No 270
>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}
Probab=96.10 E-value=0.0089 Score=61.49 Aligned_cols=80 Identities=6% Similarity=-0.081 Sum_probs=46.4
Q ss_pred cCCcEEEEEcc-cCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHHH--------------------
Q 003940 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTY-------------------- 194 (784)
Q Consensus 137 e~KpI~l~~~~-~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~~-------------------- 194 (784)
.||+|+|.|++ +||+.|...-. .|+ ++.+.+. +++..|-|..+. ++..+.|.+.
T Consensus 76 ~Gk~vvL~F~~~~~cp~C~~el~-~l~--~l~~~~~~~gv~vv~Is~D~-~~~~~~~~~~~~~~~~~~~~~fp~l~D~~~ 151 (240)
T 3qpm_A 76 RGKYLVFFFYPLDFTFVCPTEII-AFS--DRVHEFRAINTEVVACSVDS-QFTHLAWIITPRKQGGLGPMKIPLLSDLTH 151 (240)
T ss_dssp TTSEEEEEECSCTTSSHHHHHHH-HHH--HHHHHHHTTTEEEEEEESSC-HHHHHHHHHSCGGGTCCCSCSSCEEECTTS
T ss_pred CCCEEEEEEECCCCCCchHHHHH-HHH--HHHHHHHHCCCEEEEEECCC-HHHHHHHHHHHHhhcCCCCCceeEEeCchH
Confidence 58999999999 99999986432 222 3334443 244444444332 2211222110
Q ss_pred -HHHhcCCC------CCCcEEEECCCCceeccc
Q 003940 195 -VQALYGGG------GWPLSVFLSPDLKPLMGG 220 (784)
Q Consensus 195 -~q~~~g~~------G~P~~vfl~pdg~pi~~~ 220 (784)
+...+|+. ..|+++++|++|++++..
T Consensus 152 ~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~ 184 (240)
T 3qpm_A 152 QISKDYGVYLEDQGHTLRGLFIIDEKGVLRQIT 184 (240)
T ss_dssp HHHHHTTCEETTTTEECEEEEEECTTSBEEEEE
T ss_pred HHHHHhCCccccCCCccceEEEEcCCCeEEEEE
Confidence 11112443 479999999999998764
No 271
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}
Probab=96.08 E-value=0.017 Score=58.11 Aligned_cols=20 Identities=5% Similarity=-0.245 Sum_probs=17.9
Q ss_pred cCCcEEEEEcccCChhhhhh
Q 003940 137 RDVPIFLSIGYSTCHWCHVM 156 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~M 156 (784)
.||+|+|.|+++||+.|..|
T Consensus 37 kGKvvll~F~At~C~~c~e~ 56 (207)
T 2r37_A 37 AGKYVLFVNVASYGGLTGQY 56 (207)
T ss_dssp TTSEEEEEEECSSSTTTTHH
T ss_pred CCCEEEEEEeCCCCCChHHH
Confidence 68999999999999999544
No 272
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}
Probab=96.02 E-value=0.029 Score=57.51 Aligned_cols=38 Identities=8% Similarity=0.013 Sum_probs=26.5
Q ss_pred CCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHHH
Q 003940 204 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDA 244 (784)
Q Consensus 204 ~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~~ 244 (784)
.|.++++|++|++.+....-. ..+.|.+-++|+.+...
T Consensus 137 ~p~tfvID~dG~I~~~~~~~~---~~~~pd~~evl~~L~~l 174 (224)
T 3keb_A 137 SPAIILADAANVVHYSERLAN---TRDFFDFDAIEKLLQEG 174 (224)
T ss_dssp CCEEEEECTTCBEEEEEECSB---TTCCCCHHHHHHHHHHH
T ss_pred cCEEEEEcCCCEEEEEEecCC---CCCCCCHHHHHHHHHHh
Confidence 699999999999988642211 22346777887777654
No 273
>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1
Probab=95.89 E-value=0.012 Score=47.98 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=37.7
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceec
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLM 218 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~ 218 (784)
++.|+++||++|+.+.. .+ +.++-.|. .+|.++.++..+.+ + .+|..+.|+.++ +|+.+.
T Consensus 3 i~~y~~~~C~~C~~~~~-~l------~~~~i~~~--~~di~~~~~~~~~~----~-~~~~~~vP~l~~---~g~~~~ 62 (75)
T 1r7h_A 3 ITLYTKPACVQCTATKK-AL------DRAGLAYN--TVDISLDDEARDYV----M-ALGYVQAPVVEV---DGEHWS 62 (75)
T ss_dssp EEEEECTTCHHHHHHHH-HH------HHTTCCCE--EEETTTCHHHHHHH----H-HTTCBCCCEEEE---TTEEEE
T ss_pred EEEEeCCCChHHHHHHH-HH------HHcCCCcE--EEECCCCHHHHHHH----H-HcCCCccCEEEE---CCeEEc
Confidence 45689999999998763 22 22333444 45666666554332 2 248889999874 677653
No 274
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Probab=95.85 E-value=0.093 Score=59.47 Aligned_cols=159 Identities=10% Similarity=0.047 Sum_probs=102.7
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEE-E-EecCCCCCCCC----
Q 003940 544 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQ-H-SFRNGPSKAPG---- 617 (784)
Q Consensus 544 sWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~-~-~~~dg~~~~~~---- 617 (784)
.=|-+++-+|+-||.++++ +.+|+.|+++++.|.-.|..| +|.=+ + ..+.|.+...+
T Consensus 105 ETtIR~LGGLLSAy~Lsgd----------------~~lL~kA~dLad~LlpAFdTp-tgiP~~~vnl~~g~~~~~~~~~~ 167 (478)
T 1nxc_A 105 EVNIRFVGGLLSAYYLSGE----------------EIFRKKAVELGVKLLPAFHTP-SGIPWALLNMKSGIGRNWPWASG 167 (478)
T ss_dssp HHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHGGGGCSS-SSCCCSEEETTTCCEECCTTSGG
T ss_pred heehhhhhhhhhhhhccCC----------------HHHHHHHHHHHHHHHHhhcCC-CCCCcceeecccccCCCCcccCC
Confidence 3467889999999999998 789999999999999988543 45311 1 13344322111
Q ss_pred ---CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCc---ccccCCCCCccccccccCCCCCCCChhH
Q 003940 618 ---FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGNS 691 (784)
Q Consensus 618 ---~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Gg---yf~t~~~~~~l~~R~k~~~D~a~PS~Ns 691 (784)
.+...+-++.=+..|.++|||++|.+.|+++.+.+.+.- . ..|- +.+.... . . ...+...=++.-
T Consensus 168 ~~s~lAe~gsl~LEF~~LS~lTGd~~Y~~~a~~~~~~l~~~~-~-~~GL~p~~i~~~tg--~----~-~~~~~~~Ga~~D 238 (478)
T 1nxc_A 168 GSSILAEFGTLHLEFMHLSHLSGDPVFAEKVMKIRTVLNKLD-K-PEGLYPNYLNPSSG--Q----W-GQHHVSVGGLGD 238 (478)
T ss_dssp GCEEHHHHTTCHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSC-C-GGGCCCSEECTTTC--C----B-CSCEECSSTTTH
T ss_pred CCcccccccchhhhHHHHHHHHCChHHHHHHHHHHHHHHhcC-C-CCCccccccCCCCC--C----c-cCceeeecCCCc
Confidence 123334456667899999999999999999988776531 1 1221 1111100 0 0 000111122333
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHH
Q 003940 692 VSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKD 729 (784)
Q Consensus 692 v~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~ 729 (784)
..-+-|++.+.++|+. ++.|++.-++.++++...+.+
T Consensus 239 S~YEYLlK~~il~g~~-d~~~~~m~~~a~~~i~~~l~~ 275 (478)
T 1nxc_A 239 SFYEYLLKAWLMSDKT-DLEAKKMYFDAVQAIETHLIR 275 (478)
T ss_dssp HHHHHHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHTEE
T ss_pred hHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHhcc
Confidence 5778899999999864 478999988888888776643
No 275
>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A
Probab=95.84 E-value=0.018 Score=56.34 Aligned_cols=79 Identities=6% Similarity=-0.167 Sum_probs=45.9
Q ss_pred cCCcEEEEEcc-cCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHHHH----H--------------
Q 003940 137 RDVPIFLSIGY-STCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYV----Q-------------- 196 (784)
Q Consensus 137 e~KpI~l~~~~-~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~~~----q-------------- 196 (784)
.||+|+|.|++ +||+.|...-. .|+ ++.+.+. +++..|-|..+. ++..+.|.+.. .
T Consensus 29 ~Gk~vvl~F~~~~~Cp~C~~e~~-~l~--~~~~~~~~~~v~vv~Is~d~-~~~~~~~~~~~~~~~~~~fp~l~D~~~~~~ 104 (186)
T 1n8j_A 29 EGRWSVFFFYPADFTFVSPTELG-DVA--DHYEELQKLGVDVYSVSTDT-HFTHKAWHSSSETIAKIKYAMIGDPTGALT 104 (186)
T ss_dssp TTSEEEEEECSCTTCSHHHHHHH-HHH--HHHHHHHHTTEEEEEEESSC-HHHHHHHHHHCTTGGGCCSEEEECTTSHHH
T ss_pred CCCeEEEEEECCCCCCccHHHHH-HHH--HHHHHHHHCCCEEEEEECCC-HHHHHHHHHHcCcccCCceeEEECCchHHH
Confidence 58999999995 99999986432 222 2333333 345555554432 33223332221 0
Q ss_pred HhcCCC----C--CCcEEEECCCCceecc
Q 003940 197 ALYGGG----G--WPLSVFLSPDLKPLMG 219 (784)
Q Consensus 197 ~~~g~~----G--~P~~vfl~pdg~pi~~ 219 (784)
..+|+. | .|+++++|++|++++.
T Consensus 105 ~~ygv~~~~~g~~~p~~~lID~~G~i~~~ 133 (186)
T 1n8j_A 105 RNFDNMREDEGLADRATFVVDPQGIIQAI 133 (186)
T ss_dssp HHTTCEETTTTEECEEEEEECTTSBEEEE
T ss_pred HHhCCccCCCCceeeEEEEECCCCeEEEE
Confidence 112332 3 6999999999999876
No 276
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1
Probab=95.84 E-value=0.17 Score=57.61 Aligned_cols=261 Identities=15% Similarity=0.094 Sum_probs=134.2
Q ss_pred CCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhcc---CCCCceeecccCCCccccccccccCCceEEec
Q 003940 373 PHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMI---GPGGEIFSAEDADSAETEGATRKKEGAFYVWT 449 (784)
Q Consensus 373 PHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~---~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt 449 (784)
++-+-.+-.-+=|.--|....++|||+.|.++|+++.+.|.+.-. ...|-+-..+|+++.. --+..+.|.
T Consensus 169 ~~~~~~~Ae~gsl~LEF~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~~~~GL~p~~i~~~tg~-------~~~~~~~~G 241 (503)
T 1hcu_A 169 GASSNNVAEIGSLVLEWTRLSDLTGNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNGT-------FQDSSGSWS 241 (503)
T ss_dssp CCSEEEHHHHTTSHHHHHHHHHHHSCTHHHHHHHHHHHHHHSCCBSCCSBTTBCCSEEETTTCC-------BCCCEECSS
T ss_pred CCCccccccccceeeehHHHHHHhCChHHHHHHHHHHHHHHhhhcccCCCCCceeeEEeCCCCc-------ccCCeeeec
Confidence 333455666666667788889999999999999999999986321 1345444467766521 112222222
Q ss_pred hHHHHHHhhhh-HHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhh
Q 003940 450 SKEVEDILGEH-AILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDV 528 (784)
Q Consensus 450 ~~Ei~~~Lg~~-~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~ 528 (784)
+.+|. .+-+.+.|-+..+.. ..+ .+-..+.++.+++.|+..
T Consensus 242 ------a~~DS~YEYLlK~~il~g~~~-------------------------~~y-------~~m~~~a~~~i~~~l~~~ 283 (503)
T 1hcu_A 242 ------GLMDSFYEYLIKMYLYDPVAF-------------------------AHY-------KDRWVLGADSTIGHLGSH 283 (503)
T ss_dssp ------TTTHHHHHHHHHHHHHCTTTT-------------------------HHH-------HHHHHHHHHHHHHHTEEC
T ss_pred ------CCCccHHHHHHHHHHHcCCch-------------------------HHH-------HHHHHHHHHHHHHHhccC
Confidence 11111 122222222221000 001 022334555566666532
Q ss_pred hcCCCC-CCCCc-----------hhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhc
Q 003940 529 RSKRPR-PHLDD-----------KVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHL 596 (784)
Q Consensus 529 R~~R~~-P~lDd-----------KiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l 596 (784)
...+.. .++.+ -..+-|-|+.+- ++.+.+. +++++.|+++++-.....
T Consensus 284 ~~~~~~~~~v~~~~~~~~~~~~~hL~cF~~G~~aL----gg~~~~~----------------~~~~~~a~~L~~tC~~~y 343 (503)
T 1hcu_A 284 PSTRKDLTFLSSYNGQSTSPNSGHLASFGGGNFIL----GGILLNE----------------QKYIDFGIKLASSYFGTY 343 (503)
T ss_dssp BTTCTTCCEECEEETTEEESEEEGGGGGHHHHHHH----HHHHHTC----------------HHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEeccCCccccccchhhhhhhHHHHh----cCccccc----------------HHHHHHHHHHHHHHHHHH
Confidence 111100 11111 123334444332 3444443 789999999988776544
Q ss_pred cccCCCeEEEE--ecCCC--C--CCC----------CC---cchH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 003940 597 YDEQTHRLQHS--FRNGP--S--KAP----------GF---LDDY---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDE 654 (784)
Q Consensus 597 ~d~~~G~l~~~--~~dg~--~--~~~----------~~---leDy---A~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~ 654 (784)
.....|..-.. +.... . ... ++ ...| -.+|+.+.-||++|||+.|++++-++++.+..
T Consensus 344 ~~~~tGl~PE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~y~LRPE~iES~fylyR~TgD~~yre~gw~if~ai~k 423 (503)
T 1hcu_A 344 TQTASGIGPEGFAWVDSVTGAGGSPPSSQSGFYSSAGFWVTAPYYILRPETLESLYYAYRVTGDSKWQDLAWEALSAIED 423 (503)
T ss_dssp HTSSSSCCCSEEECCBTTTCCSCCCCGGGHHHHHHHSCEEEECCBCCCCHHHHHHHHHHHHHCBHHHHHHHHHHHHHHHH
T ss_pred HhCccCCCceEEEeecCccccccCCcccccccccCCCceeccccccCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 33223432221 11111 0 000 00 0012 16899999999999999999999999999999
Q ss_pred hccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCC
Q 003940 655 LFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAG 706 (784)
Q Consensus 655 ~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~ 706 (784)
+..-+ .||-.-. +|........++..+|- .+++-|-=||.+..+
T Consensus 424 ~~r~~--~Gya~i~----dV~~~~~~~~~D~meSF--~laETLKYlYLLFsd 467 (503)
T 1hcu_A 424 ACRAG--SAYSSIN----DVTQANGGGASDDMESF--WFAEALKYAYLIFAE 467 (503)
T ss_dssp HHEET--TEECCBS----CTTSTTCSCBCSCBCHH--HHHTHHHHHHHHHSC
T ss_pred HHhhc--cCCcccc----cccCCCCCCcCCccchH--HHHHHHHHHheeccC
Confidence 88543 3442211 11110001223333332 567777777777765
No 277
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum}
Probab=95.83 E-value=0.061 Score=60.81 Aligned_cols=83 Identities=20% Similarity=0.172 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhcccc---CCCeEEEEecCCCCCCCCCcchH
Q 003940 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDE---QTHRLQHSFRNGPSKAPGFLDDY 622 (784)
Q Consensus 546 Nal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~---~~G~l~~~~~dg~~~~~~~leDy 622 (784)
.+.++.|||.|++++++. +..| ..++|+.|+++.+|..++--.- ..+++|. ...++.
T Consensus 174 a~e~AAAlAaAS~vfk~~--D~~y--------A~~~L~~Ak~l~~fA~~~~~~~~~~~~~~~Y~-------s~s~~~--- 233 (466)
T 2xfg_A 174 VAETSAALAIASIIFKKV--DGEY--------SKECLKHAKELFEFADTTKSDDGYTAANGFYN-------SWSGFY--- 233 (466)
T ss_dssp HHHHHHHHHHHHHHTTTT--CHHH--------HHHHHHHHHHHHHHHHHHCCCTTCCTTTTTSC-------CSSCSH---
T ss_pred HHHHHHHHHHHHHhcccc--CHHH--------HHHHHHHHHHHHHHHHhcCCcCCCCccccccC-------CCCCCc---
Confidence 488899999999999762 1223 2678999999999998874210 0001110 112333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 003940 623 AFLISGLLDLYEFGSGTKWLVWAIEL 648 (784)
Q Consensus 623 A~li~aLL~LYeaTgd~~yL~~A~~L 648 (784)
-.++.|.++||.+|||+.||+.|++.
T Consensus 234 DEl~WAAawLy~ATgd~~Yl~~a~~~ 259 (466)
T 2xfg_A 234 DELSWAAVWLYLATNDSSYLDKAESY 259 (466)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35688999999999999999998864
No 278
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=95.80 E-value=0.032 Score=54.25 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=19.8
Q ss_pred cCCcEEEEEcccCChhhhhhhhcc
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVES 160 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~et 160 (784)
.+|.+++.|+..+|+||+.++...
T Consensus 24 ~a~v~i~~f~d~~Cp~C~~~~~~l 47 (193)
T 2rem_A 24 AGKIEVVEIFGYTCPHCAHFDSKL 47 (193)
T ss_dssp TTCEEEEEEECTTCHHHHHHHHHH
T ss_pred CCCeEEEEEECCCChhHhhhhHHH
Confidence 356688999999999999998643
No 279
>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}
Probab=95.80 E-value=0.016 Score=49.43 Aligned_cols=59 Identities=10% Similarity=0.143 Sum_probs=35.5
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhc-CCCCCCcEEEECCCCceec
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY-GGGGWPLSVFLSPDLKPLM 218 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~-g~~G~P~~vfl~pdg~pi~ 218 (784)
++.|+++||++|+.+.. .+ +.++-.|..| |++ ++....+ ...+ |..++|+.++ +|+.+.
T Consensus 8 v~~y~~~~C~~C~~~~~-~L------~~~~i~~~~v--dv~--~~~~~~l----~~~~~~~~~vP~l~~---~g~~i~ 67 (89)
T 2klx_A 8 IILYTRPNCPYCKRARD-LL------DKKGVKYTDI--DAS--TSLRQEM----VQRANGRNTFPQIFI---GDYHVG 67 (89)
T ss_dssp EEEESCSCCTTTHHHHH-HH------HHHTCCEEEE--CSC--HHHHHHH----HHHHHSSCCSCEEEE---TTEECC
T ss_pred EEEEECCCChhHHHHHH-HH------HHcCCCcEEE--ECC--HHHHHHH----HHHhCCCCCcCEEEE---CCEEEe
Confidence 56789999999998763 22 2233345544 444 3322222 2234 7889999753 677654
No 280
>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*
Probab=95.73 E-value=0.023 Score=52.93 Aligned_cols=78 Identities=10% Similarity=0.236 Sum_probs=43.9
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhh-hhcccCCHHHHHHHhcccEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVM-EVESFEDEGVAKLLNDWFVSIKVDREER-PDVDKVYMTYVQALYGGGGWP 205 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~M-e~etf~d~eVa~~ln~~FV~VkvD~ee~-pdi~~~y~~~~q~~~g~~G~P 205 (784)
.+.++.+.++++ ++.|+.+||++|+.+ .. .+..-... +-.|..|.||.++. +++ .+.+...+|..++|
T Consensus 27 ~~~v~~~i~~~~--Vvvy~~~~Cp~C~~a~k~-~L~~~~~~---~i~~~~vdvd~~~~~~~~----~~~L~~~~g~~tVP 96 (129)
T 3ctg_A 27 VAHVKDLIGQKE--VFVAAKTYCPYCKATLST-LFQELNVP---KSKALVLELDEMSNGSEI----QDALEEISGQKTVP 96 (129)
T ss_dssp HHHHHHHHHHSS--EEEEECTTCHHHHHHHHH-HHTTSCCC---GGGEEEEEGGGSTTHHHH----HHHHHHHHSCCSSC
T ss_pred HHHHHHHHcCCC--EEEEECCCCCchHHHHHH-HHHhcCcc---CCCcEEEEccccCCHHHH----HHHHHHHhCCCCCC
Confidence 455555656665 456789999999987 42 33221100 13466666665532 122 22223335888999
Q ss_pred cEEEECCCCceec
Q 003940 206 LSVFLSPDLKPLM 218 (784)
Q Consensus 206 ~~vfl~pdg~pi~ 218 (784)
.. |+ +|+.+.
T Consensus 97 ~v-fi--~g~~ig 106 (129)
T 3ctg_A 97 NV-YI--NGKHIG 106 (129)
T ss_dssp EE-EE--TTEEEE
T ss_pred EE-EE--CCEEEc
Confidence 85 45 466654
No 281
>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}
Probab=95.71 E-value=0.016 Score=49.60 Aligned_cols=67 Identities=27% Similarity=0.293 Sum_probs=40.5
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
++.|+++||++|+++.. +.+.++-.|..+.||..+. +-+......+...+|..++|+.++ +|+.+.+
T Consensus 14 v~ly~~~~Cp~C~~~~~-------~L~~~gi~~~~~~v~~~~~-~~~~~~~~~l~~~~g~~~vP~l~~---~g~~i~G 80 (92)
T 3ic4_A 14 VLMYGLSTCPHCKRTLE-------FLKREGVDFEVIWIDKLEG-EERKKVIEKVHSISGSYSVPVVVK---GDKHVLG 80 (92)
T ss_dssp SEEEECTTCHHHHHHHH-------HHHHHTCCCEEEEGGGCCH-HHHHHHHHHHHHHHSSSCSCEEEE---TTEEEES
T ss_pred EEEEECCCChHHHHHHH-------HHHHcCCCcEEEEeeeCCc-cchHHHHHHHHHhcCCCCcCEEEE---CCEEEeC
Confidence 45688999999999763 3344555687777775321 111111112222348889999887 6776643
No 282
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A*
Probab=95.65 E-value=0.087 Score=58.48 Aligned_cols=79 Identities=24% Similarity=0.214 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li 626 (784)
+=++.+|..+++++++ ++|++.|+++++.+.+. |.+ ....++..+.|=.+
T Consensus 292 ~Gi~~~l~~~~~~~~~----------------~~~~~~a~~~~~~~~~~------g~~--------~~~~~lChG~aG~~ 341 (411)
T 3e6u_A 292 PGVIYMLIQAYKVFRE----------------EKYLCDAYQCADVIWQY------GLL--------KKGYGLCHGSAGNA 341 (411)
T ss_dssp HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHH------CSB--------TTCSCSTTSHHHHH
T ss_pred HHHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHHHhc------Ccc--------CCCCceecChHHHH
Confidence 3345668888899987 78999999988777553 100 11246667788889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 003940 627 SGLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (784)
Q Consensus 627 ~aLL~LYeaTgd~~yL~~A~~L~~~~~~~ 655 (784)
+.++.+|+.|+|++|+++|.++.+.+.+.
T Consensus 342 ~~ll~~~~~t~~~~~~~~A~~~~~~~~~~ 370 (411)
T 3e6u_A 342 YAFLTLYNLTQDMKYLYRACKFAEWCLEY 370 (411)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887553
No 283
>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C
Probab=95.49 E-value=0.02 Score=59.52 Aligned_cols=20 Identities=10% Similarity=0.046 Sum_probs=17.9
Q ss_pred cCCcEEEEEc-ccCChhhhhh
Q 003940 137 RDVPIFLSIG-YSTCHWCHVM 156 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~M 156 (784)
.||+|+|.|+ ++||..|...
T Consensus 90 kGK~vvL~F~~a~~cp~C~~e 110 (254)
T 3tjj_A 90 RGKYLVFFFYPLDFTFVCPTE 110 (254)
T ss_dssp TTSEEEEEECSCTTCSSCCHH
T ss_pred CCCeEEEEEECCCCCCchHHH
Confidence 5899999999 9999999863
No 284
>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A
Probab=95.48 E-value=0.027 Score=54.94 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.0
Q ss_pred cCCcEEEEEcccCChhhhhhhhc
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVE 159 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~e 159 (784)
.+|++++.|+..||+||+.++.+
T Consensus 21 ~~~~~i~~f~d~~Cp~C~~~~~~ 43 (195)
T 2znm_A 21 SGKIEVLEFFGYFCVHCHHFDPL 43 (195)
T ss_dssp SSSEEEEEEECTTSCCTTSSCHH
T ss_pred CCCcEEEEEECCCChhHHHHhHH
Confidence 46888999999999999998753
No 285
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=95.47 E-value=0.011 Score=58.74 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=50.8
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHh--cccEEEEEcCCCCccHHHHH-----------------HHHHH
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLN--DWFVSIKVDREERPDVDKVY-----------------MTYVQ 196 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln--~~FV~VkvD~ee~pdi~~~y-----------------~~~~q 196 (784)
.||+|+|.|+ +.||..|...-. ++.++.+ +++..|-|..+. ++..+.| ....+
T Consensus 77 ~Gk~vvl~F~~~~~c~~C~~e~~------~l~~l~~~~~~v~vv~Is~D~-~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 149 (200)
T 3zrd_A 77 AGKRKVLNIFPSIDTGVCAASVR------KFNQLAGELENTVVLCISSDL-PFAQSRFCGAEGLSNVITLSTLRGADFKQ 149 (200)
T ss_dssp TTSEEEEEECSCCCCSCCCHHHH------HHHHHHHTSTTEEEEEEESSC-HHHHTTCTTTTTCTTEEEEETTSCTHHHH
T ss_pred CCCcEEEEEECCCCCchhHHHHH------HHHHHHHHhCCCEEEEEECCC-HHHHHHHHHHcCCCCceEEecCchHHHHH
Confidence 5899999998 689999986432 3333332 344444443321 1111001 01111
Q ss_pred HhcCC-------CC--CCcEEEECCCCceeccc-cccCCCCCCCcchHHHHHHHH
Q 003940 197 ALYGG-------GG--WPLSVFLSPDLKPLMGG-TYFPPEDKYGRPGFKTILRKV 241 (784)
Q Consensus 197 ~~~g~-------~G--~P~~vfl~pdg~pi~~~-tY~p~~~~~~~~~f~~~L~~i 241 (784)
. +|+ .| .|+++++|++|++++.. +.-. ...+.+.++|+.+
T Consensus 150 ~-ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~----~~~~~~~~~l~~L 199 (200)
T 3zrd_A 150 A-YGVAITEGPLAGLTARAVVVLDGQDNVIYSELVNEI----TTEPNYDAALAAL 199 (200)
T ss_dssp H-TTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBT----TSCCCHHHHHHHH
T ss_pred H-hCceeecccCCCccccEEEEECCCCeEEEEEecCCc----ccCCCHHHHHHhh
Confidence 1 133 24 59999999999998763 1111 1235677777654
No 286
>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0
Probab=95.46 E-value=0.037 Score=48.98 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=39.8
Q ss_pred cEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhc-CCCCCCcEEEECCCCceec
Q 003940 140 PIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALY-GGGGWPLSVFLSPDLKPLM 218 (784)
Q Consensus 140 pI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~-g~~G~P~~vfl~pdg~pi~ 218 (784)
.-++.|+++||++|+++.+ . .+.++-.|..| |+++.|+..+.+ ..++ |..++|+. |+ +|+.+.
T Consensus 16 ~~v~vy~~~~Cp~C~~ak~-~------L~~~~i~y~~i--dI~~~~~~~~~l----~~~~~g~~~vP~i-fi--~g~~ig 79 (99)
T 3qmx_A 16 AKIEIYTWSTCPFCMRALA-L------LKRKGVEFQEY--CIDGDNEAREAM----AARANGKRSLPQI-FI--DDQHIG 79 (99)
T ss_dssp CCEEEEECTTCHHHHHHHH-H------HHHHTCCCEEE--ECTTCHHHHHHH----HHHTTTCCCSCEE-EE--TTEEEE
T ss_pred CCEEEEEcCCChhHHHHHH-H------HHHCCCCCEEE--EcCCCHHHHHHH----HHHhCCCCCCCEE-EE--CCEEEe
Confidence 3356689999999999863 2 33344456554 555556554333 3344 78899976 44 567665
Q ss_pred c
Q 003940 219 G 219 (784)
Q Consensus 219 ~ 219 (784)
+
T Consensus 80 G 80 (99)
T 3qmx_A 80 G 80 (99)
T ss_dssp S
T ss_pred C
Confidence 4
No 287
>1hcu_A Alpha-1,2-mannosidase; glycosylation, glycosyl hydrolase; HET: NAG; 2.37A {Trichoderma reesei} SCOP: a.102.2.1
Probab=95.38 E-value=0.12 Score=59.05 Aligned_cols=174 Identities=10% Similarity=0.006 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE--EecCCCCCCC---CCc
Q 003940 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH--SFRNGPSKAP---GFL 619 (784)
Q Consensus 545 WNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~--~~~dg~~~~~---~~l 619 (784)
=|-.++-+|+-||.++++......-+ +...+.+|+.|+++++.|.-.|..| +|.=+. ..+.|.+... ..+
T Consensus 101 TtIR~LGGLLSAy~Ls~~~~~~~~~~----~~~~~~lL~kA~dLadrLlpAFdTp-tgiP~~~vnl~~~~~~~~~~~~~~ 175 (503)
T 1hcu_A 101 TNIRYLGGLLSAYDLLRGPFSSLATN----QTLVNSLLRQAQTLANGLKVAFTTP-SGVPDPTVFFNPTVRRSGASSNNV 175 (503)
T ss_dssp HHHHHHHHHHHHHHHHHTTTGGGCCC----HHHHHHHHHHHHHHHHHHGGGGCSS-SSCCCSEEECSSSCEECCCSEEEH
T ss_pred eehhhHhHHHHHHHHccCcccccccc----ccchHHHHHHHHHHHHHHHHhhcCC-CCCCcceeecccCCCCCCCCcccc
Confidence 36888999999999998720000000 0001479999999999999888543 553111 1233322111 122
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--ccCCCc---ccccCCCCCccccccccCCCCCCCChhHHHH
Q 003940 620 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL--DREGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSV 694 (784)
Q Consensus 620 eDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~--D~~~Gg---yf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a 694 (784)
...+-++.=+..|.++|||++|.+.|+++.+.+.+.-. .+..|- +.+.... .. ...+...=++.-..-
T Consensus 176 Ae~gsl~LEF~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~~~~GL~p~~i~~~tg--~~-----~~~~~~~Ga~~DS~Y 248 (503)
T 1hcu_A 176 AEIGSLVLEWTRLSDLTGNPQYAQLAQKGESYLLNPKGSPEAWPGLIGTFVSTSNG--TF-----QDSSGSWSGLMDSFY 248 (503)
T ss_dssp HHHTTSHHHHHHHHHHHSCTHHHHHHHHHHHHHHSCCBSCCSBTTBCCSEEETTTC--CB-----CCCEECSSTTTHHHH
T ss_pred ccccceeeehHHHHHHhCChHHHHHHHHHHHHHHhhhcccCCCCCceeeEEeCCCC--cc-----cCCeeeecCCCccHH
Confidence 33344566788999999999999999999988876321 011221 1111110 00 000111223333578
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 003940 695 INLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMA 731 (784)
Q Consensus 695 ~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~~p 731 (784)
+-|++.+.++++. ++.|++.-++.++.+...+.+.|
T Consensus 249 EYLlK~~il~g~~-~~~y~~m~~~a~~~i~~~l~~~~ 284 (503)
T 1hcu_A 249 EYLIKMYLYDPVA-FAHYKDRWVLGADSTIGHLGSHP 284 (503)
T ss_dssp HHHHHHHHHCTTT-THHHHHHHHHHHHHHHHHTEECB
T ss_pred HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHhccCC
Confidence 8899999999874 36899998888888888777665
No 288
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}
Probab=95.29 E-value=0.037 Score=47.36 Aligned_cols=62 Identities=15% Similarity=0.261 Sum_probs=36.7
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCceecc
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~ 219 (784)
++.|+++||++|+++.. .+ +..+-.|..+.|| +.++..+.+. ..++..++|+. |. +|+.+.+
T Consensus 8 v~ly~~~~C~~C~~~~~-~L------~~~~i~~~~~di~--~~~~~~~~l~----~~~~~~~vP~l-~~--~g~~i~g 69 (92)
T 2khp_A 8 VIIYTRPGCPYCARAKA-LL------ARKGAEFNEIDAS--ATPELRAEMQ----ERSGRNTFPQI-FI--GSVHVGG 69 (92)
T ss_dssp EEEEECTTCHHHHHHHH-HH------HHTTCCCEEEEST--TSHHHHHHHH----HHHTSSCCCEE-EE--TTEEEES
T ss_pred EEEEECCCChhHHHHHH-HH------HHcCCCcEEEECC--CCHHHHHHHH----HHhCCCCcCEE-EE--CCEEEcC
Confidence 56789999999998753 22 2223346655444 4454443332 23478899964 44 5666543
No 289
>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}
Probab=95.25 E-value=0.051 Score=50.65 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=47.2
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
++.++++.+.++ ++.|+.+||++|+...+ .|+.. .-++-.|..|.||.++.++..+ .++...+|...+|..
T Consensus 4 ~~~~~~ii~~~~--Vvvysk~~Cp~C~~ak~-lL~~~---~~~~v~~~~idid~~~d~~~~~---~~l~~~~G~~tVP~I 74 (127)
T 3l4n_A 4 QKEYSLILDLSP--IIIFSKSTCSYSKGMKE-LLENE---YQFIPNYYIIELDKHGHGEELQ---EYIKLVTGRGTVPNL 74 (127)
T ss_dssp HHHHHHHHTSCS--EEEEECTTCHHHHHHHH-HHHHH---EEEESCCEEEEGGGSTTHHHHH---HHHHHHHSCCSSCEE
T ss_pred HHHHHHHHccCC--EEEEEcCCCccHHHHHH-HHHHh---cccCCCcEEEEecCCCCHHHHH---HHHHHHcCCCCcceE
Confidence 456777777766 55677899999998763 22210 0023357777887764433222 233344588889987
Q ss_pred EEECCCCceec
Q 003940 208 VFLSPDLKPLM 218 (784)
Q Consensus 208 vfl~pdg~pi~ 218 (784)
++ +|+.|.
T Consensus 75 fI---~G~~IG 82 (127)
T 3l4n_A 75 LV---NGVSRG 82 (127)
T ss_dssp EE---TTEECC
T ss_pred EE---CCEEEc
Confidence 54 456553
No 290
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A*
Probab=95.16 E-value=0.12 Score=58.90 Aligned_cols=160 Identities=9% Similarity=-0.013 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHHHHHh------hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE--EecCCCCCCC
Q 003940 545 WNGLVISSFARASKIL------KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH--SFRNGPSKAP 616 (784)
Q Consensus 545 WNal~I~ALa~a~~~~------~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~--~~~dg~~~~~ 616 (784)
=|-+++-+|+-||.+. ++ +.+|+.|+++++.|.-.|....+|.=+. ..+.|.+...
T Consensus 100 TtIR~LGGLLSAy~Ls~~~~~~~d----------------~~lL~kA~dLadrLlpAFd~TptgiP~~~vnl~~g~~~~~ 163 (511)
T 1dl2_A 100 TTIRMLGGLLSAYHLSDVLEVGNK----------------TVYLNKAIDLGDRLALAFLSTQTGIPYSSINLHSGQAVKN 163 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCH----------------HHHHHHHHHHHHHHHGGGGSSSSSCCCSEEETTTCCEECC
T ss_pred eehhhhhhhhhHHHhcccccCCCc----------------HHHHHHHHHHHHHHHHhhcCCCCCCCCceeecccCCCCCC
Confidence 3678899999999998 55 7899999999999999985133553111 1344432211
Q ss_pred CC------cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc--ccCCCc---ccccCCCCCccccccccCCCCC
Q 003940 617 GF------LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL--DREGGG---YFNTTGEDPSVLLRVKEDHDGA 685 (784)
Q Consensus 617 ~~------leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~--D~~~Gg---yf~t~~~~~~l~~R~k~~~D~a 685 (784)
.. +...+-++.=+..|.++|||++|.+.|+++.+.+.+.-- .+..|- +.+.... .. ...+..
T Consensus 164 ~~~~~~s~~Ae~gSl~LEF~~LS~LTGd~~Y~~~a~r~~~~l~~~~~~~~~~~GL~p~~i~~~tg--~~-----~~~~~~ 236 (511)
T 1dl2_A 164 HADGGASSTAEFTTLQMEFKYLAYLTGNRTYWELVERVYEPLYKNNDLLNTYDGLVPIYTFPDTG--KF-----GASTIR 236 (511)
T ss_dssp SSGGGCEEHHHHSSCHHHHHHHHHHHTCHHHHHHHHTTHHHHHHHHTHHHHHTTCCBSEECTTTC--CB-----CSCCBC
T ss_pred CCCCcccccccccceeeeHHHHHHHHCChHHHHHHHHHHHHHHhcccccCCCCCCcceEEcCCCC--Cc-----cCCeee
Confidence 11 222233456688899999999999999999888776420 011221 1111110 00 001111
Q ss_pred CCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHh
Q 003940 686 EPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDM 730 (784)
Q Consensus 686 ~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~~ 730 (784)
.=++.-..-+-|++.+.++++ +.|++.-++.++++...+.+.
T Consensus 237 lGa~~DS~YEYLlK~~il~~d---~~y~~m~~~a~~~i~~~L~~~ 278 (511)
T 1dl2_A 237 FGSRGDSFYEYLLKQYLLTHE---TLYYDLYRKSMEGMKKHLLAQ 278 (511)
T ss_dssp SSTTTHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHTEEE
T ss_pred ecCCCCcHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhccC
Confidence 223333577889999999853 789999888888887776543
No 291
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Probab=95.15 E-value=0.16 Score=58.23 Aligned_cols=161 Identities=9% Similarity=0.026 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE--EecCCCCCCC-----CC
Q 003940 546 NGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH--SFRNGPSKAP-----GF 618 (784)
Q Consensus 546 Nal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~--~~~dg~~~~~-----~~ 618 (784)
|-.++-+|+-||.+.++ +.+|+.|+++++.|.-.|..| +|.=+. ..+.|..... ..
T Consensus 171 tIR~LGGLLSAy~Lsgd----------------~~lL~kA~dLadrLlpAFdTp-tgiP~~~vnl~~g~~~~~~~~~~s~ 233 (538)
T 1x9d_A 171 TIRILGGLLSAYHLSGD----------------SLFLRKAEDFGNRLMPAFRTP-SKIPYSDVNIGTGVAHPPRWTSDST 233 (538)
T ss_dssp HHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHGGGGCST-TSCCCSEEETTTCCEECCTTCSEEE
T ss_pred ehhhhhhhhhHHHhcCC----------------HHHHHHHHHHHHHHHHhhcCC-CCCCcceeeecccccCCCCcCCCce
Confidence 57889999999999998 789999999999999888543 553111 1334432111 12
Q ss_pred cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCc---ccccCCCCCccccccccCCCCCCCChhHHHHH
Q 003940 619 LDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVI 695 (784)
Q Consensus 619 leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Gg---yf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~ 695 (784)
+...+-++.=+..|.++|||++|.+.|.++.+.+.+.- ++..|- +.+.... . .....+...=++.-...+
T Consensus 234 lAe~GSl~LEF~~LS~LTGd~~Y~~~a~r~~~~l~~~~-~~~~GL~p~~i~~~tG--~----~~~~~~~~lGa~~DS~YE 306 (538)
T 1x9d_A 234 VAEVTSIQLEFRELSRLTGDKKFQEAVEKVTQHIHGLS-GKKDGLVPMFINTHSG--L----FTHLGVFTLGARADSYYE 306 (538)
T ss_dssp HHHHHSSHHHHHHHHHHHCCTHHHHHHHHHHHHHHTCS-CCBTTBCCSEEETTTC--C----EESTTEECSSTTTHHHHH
T ss_pred eccccceeeeHHHHHHHhCCcHHHHHHHHHHHHHHhcc-cCCCCCcceEEeCCCC--C----ccCCcceeecCCccHHHH
Confidence 33344566678899999999999999999998886632 122232 1111110 0 000001112223335788
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 003940 696 NLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMA 731 (784)
Q Consensus 696 ~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~~p 731 (784)
-|++.+.++++. ++.|++.-.+.++++...+.+.|
T Consensus 307 YLlK~~il~g~~-d~~y~~my~~a~~~i~~~L~~~~ 341 (538)
T 1x9d_A 307 YLLKQWIQGGKQ-ETQLLEDYVEAIEGVRTHLLRHS 341 (538)
T ss_dssp HHHHHHHHTTSC-CHHHHHHHHHHHHHHHHHTEEEC
T ss_pred HHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHhccCC
Confidence 899999999864 47899998888888877775443
No 292
>1nxc_A Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA; glycosidase, structural genomics, PSI, protein initiative; HET: NAG BMA MAN; 1.51A {Mus musculus} SCOP: a.102.2.1
Probab=94.75 E-value=0.05 Score=61.67 Aligned_cols=96 Identities=11% Similarity=0.119 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccc----cCC--C-CCCCChhHH
Q 003940 620 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVK----EDH--D-GAEPSGNSV 692 (784)
Q Consensus 620 eDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k----~~~--D-~a~PS~Nsv 692 (784)
|-..=.+-|||.+|.++||+.+|++|++|.+.+..-| |..+|-=+. .+.++.. ... + .++.++-+.
T Consensus 105 ETtIR~LGGLLSAy~Lsgd~~lL~kA~dLad~LlpAF-dTptgiP~~------~vnl~~g~~~~~~~~~~~~s~lAe~gs 177 (478)
T 1nxc_A 105 EVNIRFVGGLLSAYYLSGEEIFRKKAVELGVKLLPAF-HTPSGIPWA------LLNMKSGIGRNWPWASGGSSILAEFGT 177 (478)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGG-CSSSSCCCS------EEETTTCCEECCTTSGGGCEEHHHHTT
T ss_pred heehhhhhhhhhhhhccCCHHHHHHHHHHHHHHHHhh-cCCCCCCcc------eeecccccCCCCcccCCCCcccccccc
Confidence 4445578899999999999999999999999998888 666652111 0111110 000 0 112222233
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003940 693 SVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (784)
Q Consensus 693 ~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~ 725 (784)
+...+.+|+++||+ +.|.+.|+++.+.+..
T Consensus 178 l~LEF~~LS~lTGd---~~Y~~~a~~~~~~l~~ 207 (478)
T 1nxc_A 178 LHLEFMHLSHLSGD---PVFAEKVMKIRTVLNK 207 (478)
T ss_dssp CHHHHHHHHHHHCC---THHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHCC---hHHHHHHHHHHHHHHh
Confidence 44557899999996 7999999988877653
No 293
>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A
Probab=94.74 E-value=1.8 Score=49.57 Aligned_cols=287 Identities=16% Similarity=0.158 Sum_probs=156.3
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCceeecccCCCccccccccccCCceEEec
Q 003940 370 WHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIFSAEDADSAETEGATRKKEGAFYVWT 449 (784)
Q Consensus 370 W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt 449 (784)
-.|+-||- |-++|..++-||.+++++.|++.|.+..+-|+--+-.|.|-=|..++-...... ..+..+. + .
T Consensus 163 ~~VsvFET----tIR~LGGLLSAy~Lsgd~~lL~kA~dLadrLlpAFdTptgiP~~~vnl~~g~~~--~~~~~~~--s-~ 233 (538)
T 1x9d_A 163 VDVNLFES----TIRILGGLLSAYHLSGDSLFLRKAEDFGNRLMPAFRTPSKIPYSDVNIGTGVAH--PPRWTSD--S-T 233 (538)
T ss_dssp CEEEHHHH----HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHGGGGCSTTSCCCSEEETTTCCEE--CCTTCSE--E-E
T ss_pred ceeehhhe----ehhhhhhhhhHHHhcCCHHHHHHHHHHHHHHHHhhcCCCCCCcceeeecccccC--CCCcCCC--c-e
Confidence 35666775 556899999999999999999999999999998887676754444332110000 0000000 0 1
Q ss_pred hHHHHHHhhhhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHHhhh
Q 003940 450 SKEVEDILGEHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLFDVR 529 (784)
Q Consensus 450 ~~Ei~~~Lg~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~~~R 529 (784)
.+|+-.+. -.|.. ++...|- .+..+..+.+.+.|.+.|
T Consensus 234 lAe~GSl~----LEF~~------------------------------------LS~LTGd--~~Y~~~a~r~~~~l~~~~ 271 (538)
T 1x9d_A 234 VAEVTSIQ----LEFRE------------------------------------LSRLTGD--KKFQEAVEKVTQHIHGLS 271 (538)
T ss_dssp HHHHHSSH----HHHHH------------------------------------HHHHHCC--THHHHHHHHHHHHHHTCS
T ss_pred ecccccee----eeHHH------------------------------------HHHHhCC--cHHHHHHHHHHHHHHhcc
Confidence 11110000 00011 1112221 223344455555565544
Q ss_pred cCCCCC----CCCc-------hhhhchHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHh
Q 003940 530 SKRPRP----HLDD-------KVIVSWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRH 595 (784)
Q Consensus 530 ~~R~~P----~lDd-------KiitsWNal~I~---ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~ 595 (784)
. +... ++|- .-..+|.|..-+ =|.+.+..+|.. .+.|+++=.++++-+.+|
T Consensus 272 ~-~~~GL~p~~i~~~tG~~~~~~~~~lGa~~DS~YEYLlK~~il~g~~--------------d~~y~~my~~a~~~i~~~ 336 (538)
T 1x9d_A 272 G-KKDGLVPMFINTHSGLFTHLGVFTLGARADSYYEYLLKQWIQGGKQ--------------ETQLLEDYVEAIEGVRTH 336 (538)
T ss_dssp C-CBTTBCCSEEETTTCCEESTTEECSSTTTHHHHHHHHHHHHHTTSC--------------CHHHHHHHHHHHHHHHHH
T ss_pred c-CCCCCcceEEeCCCCCccCCcceeecCCccHHHHHHHHHHHHcCCc--------------hHHHHHHHHHHHHHHHHH
Confidence 2 1111 1111 002344444433 566777777731 268889999999999999
Q ss_pred ccc-c-CCCeEE-EEecCCCCCCCCCcchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhccccCCCc----c-cc
Q 003940 596 LYD-E-QTHRLQ-HSFRNGPSKAPGFLDDYAFLISGLLDLYEF-GSGTKWLVWAIELQNTQDELFLDREGGG----Y-FN 666 (784)
Q Consensus 596 l~d-~-~~G~l~-~~~~dg~~~~~~~leDyA~li~aLL~LYea-Tgd~~yL~~A~~L~~~~~~~F~D~~~Gg----y-f~ 666 (784)
+.. + ..+..| .....|.. ....+--+.++-|++.|.-. ..++++++.|++|.+.+...+....+|- | |.
T Consensus 337 L~~~~~~~~~~~v~~~~~g~~--~~~~~hL~cF~gG~~aLgg~~~~~~~~l~~a~~L~~tC~~~Y~~~~tGl~PE~~~~~ 414 (538)
T 1x9d_A 337 LLRHSEPSKLTFVGELAHGRF--SAKMDHLVCFLPGTLALGVYHGLPASHMELAQELMETCYQMNRQMETGLSPEIVHFN 414 (538)
T ss_dssp TEEECTTTCCEEECEEETTEE--ECEEEGGGGHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTSTTSCCCSEEECC
T ss_pred hccCCCCCCceEEEeccCCcc--CcccchHhhhhhhHHHhcCcccCcHHHHHHHHHHHHHHHHHHHhcccCCCceEEEec
Confidence 753 2 123333 22333321 12233345556677777654 4567899999999999887765434442 2 22
Q ss_pred cCC--CCCccccccccCCCCCCC-ChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhhhh
Q 003940 667 TTG--EDPSVLLRVKEDHDGAEP-SGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMAMA 733 (784)
Q Consensus 667 t~~--~~~~l~~R~k~~~D~a~P-S~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~~p~~ 733 (784)
... ..+...++. .|...| -+ =.++.+.-|+++||+ +.|++.+.++++++.... +.+.+
T Consensus 415 ~~~~~~~~~~~~~~---~d~~y~LRP--E~IES~fylyR~TgD---~~yre~gw~~f~ai~k~~-rt~~G 475 (538)
T 1x9d_A 415 LYPQPGRRDVEVKP---ADRHNLLRP--ETVESLFYLYRVTGD---RKYQDWGWEILQSFSRFT-RVPSG 475 (538)
T ss_dssp SSCCTTCCSCBCCG---GGCCBCCCC--HHHHHHHHHHHHHCC---THHHHHHHHHHHHHHHHT-BCTTS
T ss_pred cCCCccccceeeec---cCcccCCCh--HHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHhc-ccccC
Confidence 110 011111111 011110 11 368889999999996 899999999999987655 45555
No 294
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=94.65 E-value=0.077 Score=57.00 Aligned_cols=133 Identities=7% Similarity=-0.063 Sum_probs=69.4
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHH--------------HHHhcCC
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTY--------------VQALYGG 201 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~--------------~q~~~g~ 201 (784)
.||+|+|.|+ .+||+.|..- -..|++ .-.+++..|=|..+ .+.-.+.|.+. +...+|+
T Consensus 23 ~Gk~vvl~F~p~~~tp~C~~e-~~~~~~-----~~~~~~~v~gis~D-~~~~~~~f~~~~~l~fp~l~D~~~~v~~~ygv 95 (322)
T 4eo3_A 23 YGKYTILFFFPKAGTSGSTRE-AVEFSR-----ENFEKAQVVGISRD-SVEALKRFKEKNDLKVTLLSDPEGILHEFFNV 95 (322)
T ss_dssp TTSEEEEEECSSTTSHHHHHH-HHHHHH-----SCCTTEEEEEEESC-CHHHHHHHHHHHTCCSEEEECTTCHHHHHTTC
T ss_pred CCCeEEEEEECCCCCCCCHHH-HHHHHH-----HhhCCCEEEEEeCC-CHHHHHHHHHhhCCceEEEEcCchHHHHhcCC
Confidence 5899999998 6899999752 112211 01123444444333 22222222211 1111244
Q ss_pred ----CCCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccCCCCCC
Q 003940 202 ----GGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWDKKRDMLAQSGAFAIEQLSEALSASASSNKLP 277 (784)
Q Consensus 202 ----~G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~~~~~~~~~l~~~a~~~~~~l~~~~~~~~~~~~~~ 277 (784)
...|+++++|++|++.+.-.-+.+. ...-++|+.+.+.- +....+.+.|+...+.. .=.+
T Consensus 96 ~~~~~~~r~tfiId~~G~i~~~~~~v~~~-----~h~~~~l~~~~~~~--------~~~~~~~~~I~~RRSiR---~F~~ 159 (322)
T 4eo3_A 96 LENGKTVRSTFLIDRWGFVRKEWRRVKVE-----GHVQEVKEALDRLI--------EEDLSLNKHIEWRRARR---ALKK 159 (322)
T ss_dssp EETTEECCEEEEECTTSBEEEEEESCCST-----THHHHHHHHHHHHH--------HHHTSCCHHHHHCCCCC---CBCC
T ss_pred CCCCcCccEEEEECCCCEEEEEEeCCCcc-----ccHHHHHHHHhhhc--------hhhhHHHHHHHhhhccC---CcCc
Confidence 2368999999999987642112222 14667777776542 22234556666554432 1122
Q ss_pred CCCCHHHHHHHHHHH
Q 003940 278 DELPQNALRLCAEQL 292 (784)
Q Consensus 278 ~~~~~~~l~~~~~~l 292 (784)
..++.+.++++++.-
T Consensus 160 ~~V~~e~l~~ileaA 174 (322)
T 4eo3_A 160 DRVPREELELLIKAA 174 (322)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHH
Confidence 345777887777644
No 295
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=94.65 E-value=0.085 Score=47.15 Aligned_cols=71 Identities=8% Similarity=0.090 Sum_probs=39.9
Q ss_pred HHHHhhcCCcEEEEEcc----cCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCc
Q 003940 131 FAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPL 206 (784)
Q Consensus 131 l~~Ak~e~KpI~l~~~~----~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~ 206 (784)
++.+-+.+| |.|+..+ +||++|+.+.+ .| +.++-.|. .+|+++.|++.+.+ ...+|..++|.
T Consensus 8 ~~~~i~~~~-vvvy~~g~~~~~~Cp~C~~ak~-~L------~~~~i~~~--~vdi~~~~~~~~~l----~~~~g~~~vP~ 73 (109)
T 1wik_A 8 LKVLTNKAS-VMLFMKGNKQEAKCGFSKQILE-IL------NSTGVEYE--TFDILEDEEVRQGL----KTFSNWPTYPQ 73 (109)
T ss_dssp HHHHHTTSS-EEEEESSTTTCCCSSTHHHHHH-HH------HHTCSCEE--EEESSSCHHHHHHH----HHHHSCCSSCE
T ss_pred HHHHhccCC-EEEEEecCCCCCCCchHHHHHH-HH------HHcCCCeE--EEECCCCHHHHHHH----HHHhCCCCCCE
Confidence 344444554 5554443 99999998753 22 22333444 45665556554433 23347888997
Q ss_pred EEEECCCCceec
Q 003940 207 SVFLSPDLKPLM 218 (784)
Q Consensus 207 ~vfl~pdg~pi~ 218 (784)
. |+ +|+.+.
T Consensus 74 i-fi--~g~~ig 82 (109)
T 1wik_A 74 L-YV--RGDLVG 82 (109)
T ss_dssp E-EC--SSSEEE
T ss_pred E-EE--CCEEEc
Confidence 4 44 566554
No 296
>1ia6_A Cellulase CEL9M; cellullase, alpha barrel, hydrolase; 1.80A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1ia7_A*
Probab=94.57 E-value=0.34 Score=54.38 Aligned_cols=110 Identities=14% Similarity=0.156 Sum_probs=66.8
Q ss_pred cCCCC---CCCCCCCChhHH--HHHH-Hhhhhc---cccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCCeEEEEecC--
Q 003940 299 RFGGF---GSAPKFPRPVEI--QMML-YHSKKL---EDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVD-- 367 (784)
Q Consensus 299 ~~GGf---g~aPKFP~p~~l--~~Ll-~~~~~~---~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD-- 367 (784)
..||| |.--||-.|... ..|+ -+.... .+.+ .-+++++.+.--+|=|.+- +.-.|+||. .|.
T Consensus 50 l~GGwyDAGD~~Ky~~p~a~t~~~L~w~~~e~~~~~~~~g---~~~d~ldeikwg~D~llk~---~~~~~~~y~-qVgd~ 122 (441)
T 1ia6_A 50 LTGGYHDAGDHVKFGLPQGYSAAILGWSLYEFKESFDATG---NTTKMLQQLKYFTDYFLKS---HPNSTTFYY-QVGEG 122 (441)
T ss_dssp CCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHCHHHHHHTT---CHHHHHHHHHHHHHHHHHT---CCSTTCEEE-EESCH
T ss_pred CCCCeeeCCCCCeeccchHHHHHHHHHHHHHhHHHHhhcC---cHHHHHHHHHHHHHHHHHh---ccCCCcEEE-EeCCC
Confidence 57888 555788776433 2222 111110 1111 2468888888888888773 223455554 332
Q ss_pred ----CCCCCCCCchh---H----------HH-HHHHHHHHHHHHHccCC------hHHHHHHHHHHHHHHHh
Q 003940 368 ----ERWHVPHFEKM---L----------YD-QGQLANVYLDAFSLTKD------VFYSYICRDILDYLRRD 415 (784)
Q Consensus 368 ----~~W~vPHFEKM---L----------yD-NA~Ll~~ya~Ay~~t~d------~~y~~~A~~t~~fl~~~ 415 (784)
..|..|.-.++ . .| .+..+.+++.|++++++ ..+++.|++..+|..++
T Consensus 123 ~~Dh~~w~~Pe~~~~~R~~~y~~~~~~p~sd~a~~~AAalAaas~vfk~~D~~yA~~~L~~A~~~~~fa~~~ 194 (441)
T 1ia6_A 123 NADHTYWGAPEEQTGQRPSLYKADPSSPASDILSETSAALTLMYLNYKNIDSAYATKCLNAAKELYAMGKAN 194 (441)
T ss_dssp HHHTTCCSCGGGCCSCCCCCEEEBTTBCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CccccccCChhhCCCCCceeeEeCCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHc
Confidence 24566643221 1 24 67899999999999874 45667889999998874
No 297
>2ri9_A Mannosyl-oligosaccharide alpha-1,2-mannosidase; alternative conformations, modulation of activity, glycoprot glycosidase, hydrolase; HET: NAG NDG MAN MMA; 1.95A {Penicillium citrinum} SCOP: a.102.2.1 PDB: 2ri8_A* 1kkt_A* 1kre_A* 1krf_A*
Probab=94.52 E-value=0.2 Score=56.80 Aligned_cols=170 Identities=8% Similarity=0.001 Sum_probs=104.7
Q ss_pred hHHHHHHHHHHHHHHh-hhhhhhhcccCCCCCCC---hHHHHHHHHHHHHHHHHhccccCCCeEEEE--ecCCCCCCC--
Q 003940 545 WNGLVISSFARASKIL-KSEAESAMFNFPVVGSD---RKEYMEVAESAASFIRRHLYDEQTHRLQHS--FRNGPSKAP-- 616 (784)
Q Consensus 545 WNal~I~ALa~a~~~~-~d~~~~~~~~~~~~~~~---~~~yle~A~~~a~~l~~~l~d~~~G~l~~~--~~dg~~~~~-- 616 (784)
=|-+++-+|+-||.+. ++.. .+ ..+ .+.+|+.|+++++.|.-.|..| +|.=+.. .+.+.....
T Consensus 88 TtIR~LGGLLSAy~Ls~g~~~-------~~-~~~~~~~~~lL~kA~dLadrLlpAF~Tp-tgiP~~~vnl~~~~~~~~~~ 158 (475)
T 2ri9_A 88 TTIRYLAGMLSGYDLLQGPAK-------NL-VDNQDLIDGLLDQSRNLADVLKFAFDTP-SGVPYNNINITSHGNDGATT 158 (475)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT-------TS-CCCHHHHHHHHHHHHHHHHHHGGGGCSS-SSCCCSEECTTTCCBCCCSE
T ss_pred eehHhHhHHhHHHHhccCccc-------cc-cccccchHHHHHHHHHHHHHHHHhhcCC-CCCCCceeecccCCCcCCCc
Confidence 3688899999999998 5410 00 000 1579999999999999888543 4531111 222322111
Q ss_pred CCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--c-ccCCCc---ccccCCCCCccccccccCCCCCCCChh
Q 003940 617 GFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELF--L-DREGGG---YFNTTGEDPSVLLRVKEDHDGAEPSGN 690 (784)
Q Consensus 617 ~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F--~-D~~~Gg---yf~t~~~~~~l~~R~k~~~D~a~PS~N 690 (784)
..+...+-++.=+..|.++|||++|.+.|+++.+.+.+.- . .+..|- +.+.... .. ...+...=++.
T Consensus 159 ~~~Ae~gsl~LEF~~LS~lTGd~~Y~~~a~~~~~~l~~~~~~~~~~~~GL~p~~i~~~tg--~~-----~~~~~~~Ga~~ 231 (475)
T 2ri9_A 159 NGLAVTGTLVLEWTRLSDLTGDEEYAKLSQKAESYLLKPQPSSSEPFPGLVGSSININDG--QF-----ADSRVSWNGGD 231 (475)
T ss_dssp EEHHHHHSCHHHHHHHHHHHSCTHHHHHHHHHHHHHHSCSSGGGCSBTTBCCSEEETTTC--CB-----CCCCBCSSTTT
T ss_pred cchhccccceeeHHHHHHHhCCHHHHHHHHHHHHHHHhhccccccCCCCCcceEEeCCCC--cc-----cCCceeecCCc
Confidence 1223334456678889999999999999999998887532 0 011221 1111110 00 01111122333
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhh
Q 003940 691 SVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRLKDMA 731 (784)
Q Consensus 691 sv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l~~~p 731 (784)
-..-+-|++.+.++++. ++.|++.-++.++.+...+.+.|
T Consensus 232 DS~YEYLlK~~il~g~~-~~~~~~m~~~a~~~i~~~l~~~~ 271 (475)
T 2ri9_A 232 DSFYEYLIKMYVYDPKR-FETYKDRWVLAAESTIKHLKSHP 271 (475)
T ss_dssp HHHHHHHHHHHHHCTTT-THHHHHHHHHHHHHHHHHTEECC
T ss_pred chHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHhccCC
Confidence 35788899999999874 36899998888888888777665
No 298
>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A
Probab=94.08 E-value=0.12 Score=52.87 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=23.0
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHH
Q 003940 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 203 G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
..|+++++||+|++.....|-... + ..+-++|+.|.
T Consensus 126 ~~p~~fiID~~G~I~~~~~~~~~~---g-r~~~eilr~l~ 161 (233)
T 2v2g_A 126 TCRAVFIIGPDKKLKLSILYPATT---G-RNFSEILRVID 161 (233)
T ss_dssp ECEEEEEECTTSBEEEEEEECTTB---C-CCHHHHHHHHH
T ss_pred ccceEEEECCCCEEEEEEecCCCC---C-CCHHHHHHHHH
Confidence 469999999999988764331111 1 14666666655
No 299
>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}
Probab=94.05 E-value=0.058 Score=52.03 Aligned_cols=19 Identities=5% Similarity=-0.393 Sum_probs=16.9
Q ss_pred cCCcEEEEEc-ccCChhhhh
Q 003940 137 RDVPIFLSIG-YSTCHWCHV 155 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~ 155 (784)
.||+|+|.|+ ++||+.|..
T Consensus 30 ~Gk~vvl~f~~a~wcp~C~~ 49 (167)
T 2wfc_A 30 AGKKGVLFAVPGAFTPGSSK 49 (167)
T ss_dssp TTSEEEEEEESCTTCHHHHH
T ss_pred CCCcEEEEEeCCCCCCCCCH
Confidence 5889999986 999999997
No 300
>1un2_A DSBA, thiol-disulfide interchange protein; disulfide oxidoreductase, oxidoreductase, protein disulfide isomerase, protein folding, thioredoxin; 2.4A {Escherichia coli} SCOP: c.47.1.13
Probab=94.02 E-value=0.026 Score=56.34 Aligned_cols=47 Identities=19% Similarity=0.106 Sum_probs=36.4
Q ss_pred CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCC
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER 184 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~ 184 (784)
+|+++|.|++.||+.|+.|+...=-.+++++.+..+.+.+++|++..
T Consensus 113 ~~~~vveFf~~~C~~C~~~~p~~~~~~~l~~~~~~~v~~~~~~v~~~ 159 (197)
T 1un2_A 113 GAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFM 159 (197)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTSCHHHHHTTSSCTTCCEEEEECSSS
T ss_pred CCCEEEEEECCCChhHHHhCcccccHHHHHHHCCCCCEEEEeccCcC
Confidence 68999999999999999998632133567776766778888888764
No 301
>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}
Probab=93.70 E-value=0.11 Score=49.36 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=22.3
Q ss_pred HhhcCCcEEEEEcccCChhhhhhhhc
Q 003940 134 ARKRDVPIFLSIGYSTCHWCHVMEVE 159 (784)
Q Consensus 134 Ak~e~KpI~l~~~~~wC~wC~~Me~e 159 (784)
.+..+|.+++.|+-.+|++|++++.+
T Consensus 10 ~~~~a~~~vv~f~D~~Cp~C~~~~~~ 35 (147)
T 3gv1_A 10 VRGNGKLKVAVFSDPDCPFCKRLEHE 35 (147)
T ss_dssp EETTCCEEEEEEECTTCHHHHHHHHH
T ss_pred ecCCCCEEEEEEECCCChhHHHHHHH
Confidence 34567889999999999999999875
No 302
>2v8i_A Pectate lyase; periplasm, beta-elimination, pectin degradation; 1.50A {Yersinia enterocolitica} PDB: 2v8k_A* 2v8j_A
Probab=93.59 E-value=0.16 Score=56.46 Aligned_cols=85 Identities=18% Similarity=0.105 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcchHHHHH
Q 003940 549 VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDDYAFLI 626 (784)
Q Consensus 549 ~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~--~~~~~leDyA~li 626 (784)
.+.++++|+++.+| ++..+.+..++..+--.=+++. .|.. .......+-.+++
T Consensus 378 yll~~vra~~~s~D----------------~~Lw~~~~~ma~~~~lgdi~~~---------~~~~~~~~~~~~~~sp~lL 432 (543)
T 2v8i_A 378 FLISYARAYAIDND----------------PLLWKVARGIANDQGLGDIGTA---------PGKEVKVNMDTTNSDPYAL 432 (543)
T ss_dssp HHHHHHHHHHHSCC----------------HHHHHHHHHHHHHTTCEECTTB---------TTBSCEECTTCCCCCHHHH
T ss_pred hhHHHHHHHHcCCC----------------HHHHHHHHHHHhhCCccccCCC---------cCcccccccCCCCcCHHHH
Confidence 57899999999988 6777777776644321111211 1111 1123344557899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc
Q 003940 627 SGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 658 (784)
Q Consensus 627 ~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D 658 (784)
.|+|+||++|+++.|++.|.++.+.+.++-++
T Consensus 433 ~allEL~~atq~~~~l~lA~~~g~nl~~~~~~ 464 (543)
T 2v8i_A 433 FALLDLYHASQVADYRKLAEKIGDNIIKIRYI 464 (543)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEE
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999998866554
No 303
>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10
Probab=93.48 E-value=0.057 Score=51.36 Aligned_cols=18 Identities=11% Similarity=-0.075 Sum_probs=16.8
Q ss_pred cCCcEEEEEc-ccCChhhh
Q 003940 137 RDVPIFLSIG-YSTCHWCH 154 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~ 154 (784)
.||+|+|.|+ ++||+.|.
T Consensus 34 ~gk~vvl~f~~~~~c~~C~ 52 (162)
T 1tp9_A 34 AGKKVILFGVPGAFTPTCS 52 (162)
T ss_dssp TTSEEEEEEESCTTCHHHH
T ss_pred CCCcEEEEEeCCCCCCCCC
Confidence 5899999999 89999999
No 304
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=93.27 E-value=3.3 Score=49.25 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=44.3
Q ss_pred CeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHcc---CChHHHHHHHHHHHHHHHhccCCCCceee
Q 003940 359 GGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLT---KDVFYSYICRDILDYLRRDMIGPGGEIFS 425 (784)
Q Consensus 359 GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t---~d~~y~~~A~~t~~fl~~~m~~~~Ggfys 425 (784)
||| .|+.... ..--.-+.|..+.++..+.... +++.+.+.++++++||++ ++.++|||.+
T Consensus 440 GGW-~f~~~~~-----~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls-~Q~~DGgw~a 502 (732)
T 1w6k_A 440 GGF-SFSTLDC-----GWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLN-MRNPDGGFAT 502 (732)
T ss_dssp TCC-BSSCTTT-----CCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHT-TCCTTSCBCS
T ss_pred Cee-cCCCCCC-----CCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHH-hcCCCCCEEe
Confidence 777 3554332 2224557899999999988764 456778899999999997 8899999953
No 305
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=93.27 E-value=0.11 Score=52.71 Aligned_cols=18 Identities=6% Similarity=-0.029 Sum_probs=16.9
Q ss_pred cCCcEEEEEc-ccCChhhh
Q 003940 137 RDVPIFLSIG-YSTCHWCH 154 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~ 154 (784)
.||+|+|.|+ ++||+.|.
T Consensus 32 ~gk~vvl~f~~a~~cp~C~ 50 (241)
T 1nm3_A 32 DNKTVIVFSLPGAFTPTCS 50 (241)
T ss_dssp TTSEEEEEEESCSSCHHHH
T ss_pred CCCeEEEEEeCCCCCCCCC
Confidence 5899999998 99999999
No 306
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=93.27 E-value=0.19 Score=47.98 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=19.8
Q ss_pred cCCcEEEEEcccCChhhhhhhhcc
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVES 160 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~et 160 (784)
.+|..++.|...+|++|+.++...
T Consensus 26 ~a~v~i~~f~D~~Cp~C~~~~~~~ 49 (175)
T 1z6m_A 26 NAPVKMIEFINVRCPYCRKWFEES 49 (175)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHH
T ss_pred CCCeEEEEEECCCCcchHHHHHHH
Confidence 456678889999999999998754
No 307
>1dl2_A Class I alpha-1,2-mannosidase; alpha-alpha helix barrel, hydrolase; HET: NAG NDG BMA MAN; 1.54A {Saccharomyces cerevisiae} SCOP: a.102.2.1 PDB: 1g6i_A*
Probab=93.01 E-value=0.098 Score=59.75 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=65.5
Q ss_pred chHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHHHHhccc-cCCCcccccCCCCCccccccccC----CC--CCC
Q 003940 620 DDYAFLISGLLDLYEFG------SGTKWLVWAIELQNTQDELFLD-REGGGYFNTTGEDPSVLLRVKED----HD--GAE 686 (784)
Q Consensus 620 eDyA~li~aLL~LYeaT------gd~~yL~~A~~L~~~~~~~F~D-~~~Ggyf~t~~~~~~l~~R~k~~----~D--~a~ 686 (784)
|-..=.+-|||.+|.++ +|+.+|++|++|.+.+..-| | ..+|-=+. .+.++.... .+ ..+
T Consensus 99 ETtIR~LGGLLSAy~Ls~~~~~~~d~~lL~kA~dLadrLlpAF-d~TptgiP~~------~vnl~~g~~~~~~~~~~~s~ 171 (511)
T 1dl2_A 99 ETTIRMLGGLLSAYHLSDVLEVGNKTVYLNKAIDLGDRLALAF-LSTQTGIPYS------SINLHSGQAVKNHADGGASS 171 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHGGG-GSSSSSCCCS------EEETTTCCEECCSSGGGCEE
T ss_pred heehhhhhhhhhHHHhcccccCCCcHHHHHHHHHHHHHHHHhh-cCCCCCCCCc------eeecccCCCCCCCCCCcccc
Confidence 34455788999999999 99999999999999999988 5 55653111 011111100 00 111
Q ss_pred CChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Q 003940 687 PSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETR 726 (784)
Q Consensus 687 PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~ 726 (784)
.++-+.+...+.+|+++||+ +.|.+.|+++.+.+...
T Consensus 172 ~Ae~gSl~LEF~~LS~LTGd---~~Y~~~a~r~~~~l~~~ 208 (511)
T 1dl2_A 172 TAEFTTLQMEFKYLAYLTGN---RTYWELVERVYEPLYKN 208 (511)
T ss_dssp HHHHSSCHHHHHHHHHHHTC---HHHHHHHHTTHHHHHHH
T ss_pred cccccceeeeHHHHHHHHCC---hHHHHHHHHHHHHHHhc
Confidence 12222244558899999996 89999999999888764
No 308
>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10
Probab=92.95 E-value=0.17 Score=51.29 Aligned_cols=36 Identities=31% Similarity=0.406 Sum_probs=23.2
Q ss_pred CCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHH
Q 003940 203 GWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 203 G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
..|+++++||+|++.....| |.. .+ ..+-++|+.|.
T Consensus 130 ~~p~~fiID~~G~I~~~~~~-~~~--~g-r~~~eil~~i~ 165 (224)
T 1prx_A 130 TARVVFVFGPDKKLKLSILY-PAT--TG-RNFDEILRVVI 165 (224)
T ss_dssp TCCEEEEECTTSBEEEEEEC-CTT--BC-CCHHHHHHHHH
T ss_pred cceEEEEECCCCEEEEEEec-CCC--CC-CCHHHHHHHHH
Confidence 37999999999999876433 211 11 14666666665
No 309
>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}
Probab=92.68 E-value=0.13 Score=50.67 Aligned_cols=19 Identities=11% Similarity=0.160 Sum_probs=14.7
Q ss_pred cCCcEEEE-EcccCChhhhh
Q 003940 137 RDVPIFLS-IGYSTCHWCHV 155 (784)
Q Consensus 137 e~KpI~l~-~~~~wC~wC~~ 155 (784)
.||+|+|. |.++||+.|+.
T Consensus 55 ~Gk~vvL~f~~a~wcp~C~~ 74 (184)
T 3uma_A 55 KGKRVVLFAVPGAFTPTCSL 74 (184)
T ss_dssp TTSEEEEEEESCTTCHHHHH
T ss_pred CCCCEEEEEEcCCCCCCcCH
Confidence 47766555 56999999997
No 310
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=92.37 E-value=0.41 Score=42.79 Aligned_cols=75 Identities=12% Similarity=0.165 Sum_probs=42.4
Q ss_pred HHHHHHHhhcCCcEEEEEcc----cCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~----~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G 203 (784)
.+.++.+-++++ |.|+.-. +||++|++..+ .| +..+-.|..+.|+ +.|++.+.+ ...+|...
T Consensus 8 ~~~v~~~i~~~~-Vvvy~k~t~~~p~Cp~C~~ak~-~L------~~~gi~~~~~dI~--~~~~~~~~l----~~~~g~~t 73 (109)
T 3ipz_A 8 KDTLEKLVNSEK-VVLFMKGTRDFPMCGFSNTVVQ-IL------KNLNVPFEDVNIL--ENEMLRQGL----KEYSNWPT 73 (109)
T ss_dssp HHHHHHHHTSSS-EEEEESBCSSSBSSHHHHHHHH-HH------HHTTCCCEEEEGG--GCHHHHHHH----HHHHTCSS
T ss_pred HHHHHHHHccCC-EEEEEecCCCCCCChhHHHHHH-HH------HHcCCCcEEEECC--CCHHHHHHH----HHHHCCCC
Confidence 455566666665 4444333 59999999753 22 2233346655554 455554333 33458888
Q ss_pred CCcEEEECCCCceecc
Q 003940 204 WPLSVFLSPDLKPLMG 219 (784)
Q Consensus 204 ~P~~vfl~pdg~pi~~ 219 (784)
+|.. |+ +|+.+.|
T Consensus 74 vP~i-fi--~g~~iGG 86 (109)
T 3ipz_A 74 FPQL-YI--GGEFFGG 86 (109)
T ss_dssp SCEE-EE--TTEEEEC
T ss_pred CCeE-EE--CCEEEeC
Confidence 9955 55 4565543
No 311
>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A
Probab=92.22 E-value=0.17 Score=51.04 Aligned_cols=35 Identities=26% Similarity=0.240 Sum_probs=22.7
Q ss_pred CCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHH
Q 003940 204 WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 204 ~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
+|+++++||+|++.....|-.+.+ ..+-++|+.|.
T Consensus 128 ~p~~flID~~G~I~~~~~~~~~~g----~~~~ell~~i~ 162 (220)
T 1xcc_A 128 CRCLFFISPEKKIKATVLYPATTG----RNAHEILRVLK 162 (220)
T ss_dssp CEEEEEECTTSBEEEEEEECTTBC----CCHHHHHHHHH
T ss_pred cceEEEECCCCEEEEEEecCCCCC----CCHHHHHHHHH
Confidence 799999999999987643311111 14666666554
No 312
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10
Probab=91.88 E-value=0.081 Score=50.31 Aligned_cols=20 Identities=15% Similarity=0.004 Sum_probs=17.4
Q ss_pred cCCcEEEEEc-ccCChhhhhh
Q 003940 137 RDVPIFLSIG-YSTCHWCHVM 156 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~M 156 (784)
.||+|+|.|+ ++||+.|...
T Consensus 42 ~gk~vvl~f~~~~~c~~C~~e 62 (165)
T 1q98_A 42 ASKRKVLNIFPSIDTGVCATS 62 (165)
T ss_dssp TTSEEEEEECSCSCSSCCCHH
T ss_pred CCCeEEEEEECCCCCCccHHH
Confidence 5899999998 8999999753
No 313
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=91.77 E-value=0.5 Score=44.36 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=42.3
Q ss_pred HHHHHHHhhcCCcEEEEEcc----cCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~----~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G 203 (784)
.+.++...+.++ |.|+... +||++|+...+ .|+. ++-.|..| |+++.|++.+.+ ..++|...
T Consensus 25 ~~~v~~~i~~~~-Vvvy~ks~~~~~~Cp~C~~ak~-~L~~------~gv~y~~v--dI~~d~~~~~~L----~~~~G~~t 90 (135)
T 2wci_A 25 IEKIQRQIAENP-ILLYMKGSPKLPSCGFSAQAVQ-ALAA------CGERFAYV--DILQNPDIRAEL----PKYANWPT 90 (135)
T ss_dssp HHHHHHHHHHCS-EEEEESBCSSSBSSHHHHHHHH-HHHT------TCSCCEEE--EGGGCHHHHHHH----HHHHTCCS
T ss_pred HHHHHHHhccCC-EEEEEEecCCCCCCccHHHHHH-HHHH------cCCceEEE--ECCCCHHHHHHH----HHHHCCCC
Confidence 555666666554 5555444 89999998753 3322 22245555 444456554433 33457788
Q ss_pred CCcEEEECCCCceec
Q 003940 204 WPLSVFLSPDLKPLM 218 (784)
Q Consensus 204 ~P~~vfl~pdg~pi~ 218 (784)
+|.. |+ +|+.+.
T Consensus 91 vP~V-fI--~G~~iG 102 (135)
T 2wci_A 91 FPQL-WV--DGELVG 102 (135)
T ss_dssp SCEE-EE--TTEEEE
T ss_pred cCEE-EE--CCEEEE
Confidence 8975 44 466553
No 314
>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A
Probab=91.66 E-value=0.21 Score=48.56 Aligned_cols=19 Identities=11% Similarity=-0.200 Sum_probs=15.3
Q ss_pred cCCcEEEEEc-ccCChhhhh
Q 003940 137 RDVPIFLSIG-YSTCHWCHV 155 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~ 155 (784)
.+|+|+|.|+ ++||+.|..
T Consensus 42 ~gk~vvL~f~pa~wcp~C~~ 61 (173)
T 3mng_A 42 KGKKGVLFGVPGAFTPGCSK 61 (173)
T ss_dssp TTSEEEEEECSCTTCHHHHH
T ss_pred CCCcEEEEEEeCCCCCCCCH
Confidence 5787777665 999999994
No 315
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=91.54 E-value=0.63 Score=44.21 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.6
Q ss_pred cCCcEEEEEcccCChhhhhhhh
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEV 158 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~ 158 (784)
.++|++|.|.--.|++|+.++.
T Consensus 20 ~~~~~vvEf~dy~Cp~C~~~~~ 41 (184)
T 4dvc_A 20 SSSPVVSEFFSFYCPHCNTFEP 41 (184)
T ss_dssp CSSCEEEEEECTTCHHHHHHHH
T ss_pred CCCCEEEEEECCCCHhHHHHhH
Confidence 3689999999999999999975
No 316
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=91.40 E-value=0.68 Score=42.38 Aligned_cols=77 Identities=10% Similarity=0.015 Sum_probs=41.6
Q ss_pred HHHHHHHhhcCCcEEEEEcc----cCChhhhhhhhcccCCHHHHHHHhccc-EEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLNDWF-VSIKVDREERPDVDKVYMTYVQALYGGG 202 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~----~wC~wC~~Me~etf~d~eVa~~ln~~F-V~VkvD~ee~pdi~~~y~~~~q~~~g~~ 202 (784)
.+.++.+-++++ |+|+.-. +||++|+...+ .|+ .++-.+ +...+|+++.+++.+.+ ...+|..
T Consensus 6 ~~~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~ak~-lL~------~~gv~~~~~~~~dv~~~~~~~~~l----~~~sg~~ 73 (121)
T 3gx8_A 6 RKAIEDAIESAP-VVLFMKGTPEFPKCGFSRATIG-LLG------NQGVDPAKFAAYNVLEDPELREGI----KEFSEWP 73 (121)
T ss_dssp HHHHHHHHHSCS-EEEEESBCSSSBCTTHHHHHHH-HHH------HHTBCGGGEEEEECTTCHHHHHHH----HHHHTCC
T ss_pred HHHHHHHhccCC-EEEEEeccCCCCCCccHHHHHH-HHH------HcCCCcceEEEEEecCCHHHHHHH----HHHhCCC
Confidence 344556666666 4443333 59999998753 232 222221 13345566666654433 3345777
Q ss_pred CCCcEEEECCCCceecc
Q 003940 203 GWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 203 G~P~~vfl~pdg~pi~~ 219 (784)
.+|..+ + +|+.|.|
T Consensus 74 tvP~vf-I--~g~~iGG 87 (121)
T 3gx8_A 74 TIPQLY-V--NKEFIGG 87 (121)
T ss_dssp SSCEEE-E--TTEEEES
T ss_pred CCCeEE-E--CCEEEec
Confidence 888864 4 4565543
No 317
>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A
Probab=91.39 E-value=0.44 Score=40.39 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=36.9
Q ss_pred EEEccc----CChhhhhhhhcccCCHHHHHHHhcccEEEEEcCC---CCccHHHHHHHHHHHhcCCC-----CCCcEEEE
Q 003940 143 LSIGYS----TCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE---ERPDVDKVYMTYVQALYGGG-----GWPLSVFL 210 (784)
Q Consensus 143 l~~~~~----wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~e---e~pdi~~~y~~~~q~~~g~~-----G~P~~vfl 210 (784)
+.++.+ ||++|+...+ .| +..+-.|..+.||.. +.|+..+.+ ...+|.. .+|..++
T Consensus 3 ~iY~~~~~~~~Cp~C~~ak~-~L------~~~gi~y~~idI~~~~~~~~~~~~~~l----~~~~g~~~~~~~tvP~v~i- 70 (87)
T 1aba_A 3 KVYGYDSNIHKCGPCDNAKR-LL------TVKKQPFEFINIMPEKGVFDDEKIAEL----LTKLGRDTQIGLTMPQVFA- 70 (87)
T ss_dssp EEEECCTTTSCCHHHHHHHH-HH------HHTTCCEEEEESCSBTTBCCHHHHHHH----HHHHTCSCCTTCCSCEEEC-
T ss_pred EEEEeCCCCCcCccHHHHHH-HH------HHcCCCEEEEEeeccccccCHHHHHHH----HHHhCCCCCCCCccCEEEE-
Confidence 446789 9999998653 22 223334666555532 344443333 2334766 8897654
Q ss_pred CCCCceecc
Q 003940 211 SPDLKPLMG 219 (784)
Q Consensus 211 ~pdg~pi~~ 219 (784)
++|+.+.+
T Consensus 71 -~~g~~igG 78 (87)
T 1aba_A 71 -PDGSHIGG 78 (87)
T ss_dssp -TTSCEEES
T ss_pred -ECCEEEeC
Confidence 57777654
No 318
>1wzz_A Probable endoglucanase; glycoside hydrolase family 8 (GH-8), (alpha/alpha)6 barrel, structural genomics; 1.65A {Gluconacetobacter xylinus} SCOP: a.102.1.2
Probab=91.11 E-value=3.4 Score=44.57 Aligned_cols=181 Identities=12% Similarity=0.028 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCchhhhchHHH-HHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHH
Q 003940 512 EKYLNILGECRRKLFDVRSKRPRPHLDDKVIVSWNGL-VISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAAS 590 (784)
Q Consensus 512 ~~l~~~l~~~r~kL~~~R~~R~~P~lDdKiitsWNal-~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~ 590 (784)
+++.+..+..+++-+....+-+.+.-.+-.++.-.|+ |+-|+.. +| + +.=.++..
T Consensus 17 ~~~~~~w~~~k~~~l~~~GrviD~~n~~~t~SEGqgYGMl~Av~~-----~d----------------~---~~FD~l~~ 72 (334)
T 1wzz_A 17 DAVAQQWAIFRAKYLRPSGRVVDTGNGGESHSEGQGYGMLFAASA-----GD----------------L---ASFQSMWM 72 (334)
T ss_dssp THHHHHHHHHHHHHBCTTSCBCCSSSSCEEEHHHHHHHHHHHHHH-----TC----------------H---HHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCceEEecCCCCEEecHHHHHHHHHHHHh-----CC----------------H---HHHHHHHH
Confidence 6677778888888876533222333222225556664 3333322 22 1 22246778
Q ss_pred HHHHhccccCCCeEEEEecC-CCC---CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccc
Q 003940 591 FIRRHLYDEQTHRLQHSFRN-GPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFN 666 (784)
Q Consensus 591 ~l~~~l~d~~~G~l~~~~~d-g~~---~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~ 666 (784)
|.++++...++|.+-|.+.. +.. +...=+++=-+.+.||+.+.+..|+..|++.|++|++.+.++-.....|....
T Consensus 73 wt~~~l~~~~~~L~aW~~~~~~~~~v~d~n~AtDgDl~IA~ALl~A~~~Wg~~~Y~~~A~~il~~i~~~~v~~~~g~~~l 152 (334)
T 1wzz_A 73 WARTNLQHTNDKLFSWRFLKGHQPPVPDKNNATDGDLLIALALGRAGKRFQRPDYIQDAMAIYGDVLNLMTMKAGPYVVL 152 (334)
T ss_dssp HHHHHTBCSSSSCBCSEEETTSSSSSCCCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHEEEETTEEEE
T ss_pred HHHHHhccCCCCceEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcccCCCCeEEE
Confidence 88888865556766666643 321 22233455568999999999999999999999999998888765443332221
Q ss_pred cCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003940 667 TTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (784)
Q Consensus 667 t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~ 725 (784)
.+....- .+...+...||= ++...+-.++.++++ ..|.+.++..++.+..
T Consensus 153 lPg~~gf----~~~~~~~~npSY--~~p~~~~~fa~~~~~---~~W~~~~~~~~~ll~~ 202 (334)
T 1wzz_A 153 MPGAVGF----TKKDSVILNLSY--YVMPSLLQAFDLTAD---PRWRQVMEDGIRLVSA 202 (334)
T ss_dssp CSCSSSC----BCSSEEEECGGG--CCHHHHHHHHHHHCC---THHHHHHHHHHHHHHH
T ss_pred CCCcccc----cCCCCCeechhh--cCHHHHHHHHHccCC---chHHHHHHHHHHHHHH
Confidence 1211000 000001111222 233566777888764 5788888877776543
No 319
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=90.93 E-value=0.71 Score=41.54 Aligned_cols=75 Identities=15% Similarity=0.088 Sum_probs=42.9
Q ss_pred HHHHHHHhhcCCcEEEEEc----ccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIG----YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~----~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G 203 (784)
.+.++..-++++ |.|..- ++||++|++..+ .|+ ..+-.|..+ |+++.|++.+.+ ...+|...
T Consensus 6 ~~~v~~~i~~~~-Vvlf~kg~~~~~~Cp~C~~ak~-~L~------~~gi~y~~~--di~~d~~~~~~l----~~~~g~~t 71 (111)
T 3zyw_A 6 NLRLKKLTHAAP-CMLFMKGTPQEPRCGFSKQMVE-ILH------KHNIQFSSF--DIFSDEEVRQGL----KAYSSWPT 71 (111)
T ss_dssp HHHHHHHHTSSS-EEEEESBCSSSBSSHHHHHHHH-HHH------HTTCCCEEE--EGGGCHHHHHHH----HHHHTCCS
T ss_pred HHHHHHHHhcCC-EEEEEecCCCCCcchhHHHHHH-HHH------HcCCCeEEE--ECcCCHHHHHHH----HHHHCCCC
Confidence 556666666665 433332 299999999753 333 223346555 444455554333 33457788
Q ss_pred CCcEEEECCCCceecc
Q 003940 204 WPLSVFLSPDLKPLMG 219 (784)
Q Consensus 204 ~P~~vfl~pdg~pi~~ 219 (784)
+|..++ +|+.+.|
T Consensus 72 vP~ifi---~g~~iGG 84 (111)
T 3zyw_A 72 YPQLYV---SGELIGG 84 (111)
T ss_dssp SCEEEE---TTEEEEC
T ss_pred CCEEEE---CCEEEec
Confidence 898654 5666543
No 320
>1ks8_A Endo-B-1,4-glucanase; cellulase, endoglucanase, termite, glycosyl hydrolase, family 9, (alpha/alpha)6; 1.40A {Nasutitermes takasagoensis} SCOP: a.102.1.2 PDB: 1ksc_A 1ksd_A
Probab=90.30 E-value=17 Score=40.38 Aligned_cols=110 Identities=19% Similarity=0.248 Sum_probs=67.0
Q ss_pred cCCCC---CCCCCCCChhHHH--HHH----HhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCCeEEEEec-CC
Q 003940 299 RFGGF---GSAPKFPRPVEIQ--MML----YHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSV-DE 368 (784)
Q Consensus 299 ~~GGf---g~aPKFP~p~~l~--~Ll----~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsv-D~ 368 (784)
..||| |.--||-.|.... .|+ .+....... ..-+++++.+.--+|=|.+ .++. .|+||. .| |.
T Consensus 48 l~GGwyDAGD~~Ky~~p~a~t~~~L~w~~~e~~~~~~~~---~~~~d~ldeikwg~D~llk--~~~~-~g~~y~-qVgd~ 120 (433)
T 1ks8_A 48 LTGGYFDAGDFVKFGFPMAYTATVLAWGLIDFEAGYSSA---GALDDGRKAVKWATDYFIK--AHTS-QNEFYG-QVGQG 120 (433)
T ss_dssp CCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHTHHHHHHT---TCHHHHHHHHHHHHHHHHH--HCCB-TTBEEE-EESCH
T ss_pred CCCceeECCCCCeeccchHHHHHHHHHHHHHhHHhhhcC---CchHHHHHHHHHHHHHHHH--hccC-CCcEEE-EeCCC
Confidence 57888 5557887764332 221 111101111 1246788888887777766 4444 366774 44 32
Q ss_pred -----CCCCCCCch-------------hHHHHHHHHHHHHHHHHccCC--h----HHHHHHHHHHHHHHHh
Q 003940 369 -----RWHVPHFEK-------------MLYDQGQLANVYLDAFSLTKD--V----FYSYICRDILDYLRRD 415 (784)
Q Consensus 369 -----~W~vPHFEK-------------MLyDNA~Ll~~ya~Ay~~t~d--~----~y~~~A~~t~~fl~~~ 415 (784)
-|..|.-.. .-...+..+.+++.|++++++ + .+++.|++..+|..++
T Consensus 121 ~~Dh~~w~~Pe~~~~~R~~y~~~~~~pgs~~a~~~AAalA~as~vfk~~D~~yA~~~L~~A~~~~~fa~~~ 191 (433)
T 1ks8_A 121 DADHAFWGRPEDMTMARPAYKIDTSRPGSDLAGETAAALAAASIVFRNVDGTYSNNLLTHARQLFDFANNY 191 (433)
T ss_dssp HHHHTCCSCGGGCCSCCCEEEECSSSCCHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcCCcccCCHhhCCCCCceeeccCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHC
Confidence 577664221 122478999999999999974 4 4667888899998873
No 321
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=90.12 E-value=0.48 Score=48.11 Aligned_cols=100 Identities=12% Similarity=0.031 Sum_probs=54.6
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCC---------------------Ccc---HHHHH
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE---------------------RPD---VDKVY 191 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee---------------------~pd---i~~~y 191 (784)
.||+|+|.|+ ++||+.|.. |-..|++- ..++-+.+...|-|..+. -|- .+...
T Consensus 51 ~GK~vVL~FyP~d~TpvCt~-E~~~f~~~-~~~f~~~g~~vigiS~Ds~~sh~aw~~~~~~~~~~~~l~fpllsD~~~~v 128 (216)
T 3sbc_A 51 KGKYVVLAFIPLAFTFVSPT-EIIAFSEA-AKKFEEQGAQVLFASTDSEYSLLAWTNIPRKEGGLGPINIPLLADTNHSL 128 (216)
T ss_dssp TTSEEEEEECSCTTSSHHHH-HHHHHHHH-HHHHHHTTEEEEEEESSCHHHHHHHHTSCGGGTCCCSCSSCEEECTTSHH
T ss_pred CCCeEEEEEEcCCCCCcCch-hhhHHHHh-HHhhccCCceEEEeecCchhhHHHHHHHHHHhCCccCcccceEeCCCCHH
Confidence 4899999999 999999986 44455532 223333345554443321 010 11111
Q ss_pred HHHHHHhcCCCC--CCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHH
Q 003940 192 MTYVQALYGGGG--WPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 192 ~~~~q~~~g~~G--~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
.+.+..+....| .+.++++||+|++.+...|-.+.+ ..+-++|+.|.
T Consensus 129 ak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~g----rn~dEiLr~l~ 177 (216)
T 3sbc_A 129 SRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVG----RNVDEALRLVE 177 (216)
T ss_dssp HHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBC----CCHHHHHHHHH
T ss_pred HHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCC----CCHHHHHHHHH
Confidence 111111111122 478899999999877644422222 25777777665
No 322
>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10
Probab=89.91 E-value=0.62 Score=47.00 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=44.1
Q ss_pred chHHHHHHHhhc--CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCC
Q 003940 126 WGEEAFAEARKR--DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGG 203 (784)
Q Consensus 126 ~~~eal~~Ak~e--~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G 203 (784)
..++.++..+.. ...-++.++.+||++|++..+ .++ ..+-.|..+.|+. .+... .+...+|..+
T Consensus 154 ~~~~il~~l~~~~i~~~~i~ly~~~~Cp~C~~a~~-~L~------~~~i~~~~~~i~~--~~~~~-----~l~~~~g~~~ 219 (241)
T 1nm3_A 154 DADTMLKYLAPQHQVQESISIFTKPGCPFCAKAKQ-LLH------DKGLSFEEIILGH--DATIV-----SVRAVSGRTT 219 (241)
T ss_dssp SHHHHHHHHCTTSCCCCCEEEEECSSCHHHHHHHH-HHH------HHTCCCEEEETTT--TCCHH-----HHHHHTCCSS
T ss_pred CHHHHHHHhhhhccccceEEEEECCCChHHHHHHH-HHH------HcCCceEEEECCC--chHHH-----HHHHHhCCCC
Confidence 346777766543 233345578899999998743 222 2333466555554 34421 1223348889
Q ss_pred CCcEEEECCCCceecc
Q 003940 204 WPLSVFLSPDLKPLMG 219 (784)
Q Consensus 204 ~P~~vfl~pdg~pi~~ 219 (784)
.|..++ +|+.+.+
T Consensus 220 vP~~~~---~g~~i~g 232 (241)
T 1nm3_A 220 VPQVFI---GGKHIGG 232 (241)
T ss_dssp SCEEEE---TTEEEES
T ss_pred cCEEEE---CCEEEEC
Confidence 998753 5676654
No 323
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A
Probab=89.55 E-value=3.9 Score=44.60 Aligned_cols=71 Identities=11% Similarity=-0.023 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li 626 (784)
+=++.++..+++++++ ++|++.|+++.+.+.+.- + ......+..+.|=.+
T Consensus 282 ~Gi~~~l~~~~~~~~d----------------~~~~~~a~~~~~~~~~~~-----~---------~~~~~~LCHG~aG~~ 331 (409)
T 2g0d_A 282 PGISLLYLYGGLALDN----------------DYFVDKAEKILESAMQRK-----L---------GIDSYMICHGYSGLI 331 (409)
T ss_dssp HHHHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHHHHC-----T---------TCCSCCTTTSHHHHH
T ss_pred HHHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHHHHhc-----c---------CCCCCCCCChHHHHH
Confidence 3346677889999988 789999999999988751 0 012346667788889
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q 003940 627 SGLLDLYEFGSGTKWLVWAIE 647 (784)
Q Consensus 627 ~aLL~LYeaTgd~~yL~~A~~ 647 (784)
..|+.+|+.|++++|++.|.+
T Consensus 332 ~~l~~l~~~~~~~~~~~~a~~ 352 (409)
T 2g0d_A 332 EICSLFKRLLNTKKFDSYMEE 352 (409)
T ss_dssp HHHHHHHHHHCCCTTHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 999999999999999999887
No 324
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A
Probab=88.66 E-value=0.52 Score=40.58 Aligned_cols=66 Identities=14% Similarity=0.015 Sum_probs=34.0
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcc-cEEEEEcCCCCccHHHHHHHHHHHhcC--CCCCCcEEEECCCCceec
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYG--GGGWPLSVFLSPDLKPLM 218 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~-FV~VkvD~ee~pdi~~~y~~~~q~~~g--~~G~P~~vfl~pdg~pi~ 218 (784)
++-|+.++|++|+..++ -..+.++|+++ .-...+|++..|+..+.+ ...+| ...+|..+ + +|+.+.
T Consensus 4 v~ly~~~~C~~c~~~~~----~~~ak~~L~~~~i~~~~~di~~~~~~~~~l----~~~~g~~~~~vP~if-i--~g~~ig 72 (93)
T 1t1v_A 4 LRVYSTSVTGSREIKSQ----QSEVTRILDGKRIQYQLVDISQDNALRDEM----RTLAGNPKATPPQIV-N--GNHYCG 72 (93)
T ss_dssp EEEEECSSCSCHHHHHH----HHHHHHHHHHTTCCCEEEETTSCHHHHHHH----HHHTTCTTCCSCEEE-E--TTEEEE
T ss_pred EEEEEcCCCCCchhhHH----HHHHHHHHHHCCCceEEEECCCCHHHHHHH----HHHhCCCCCCCCEEE-E--CCEEEe
Confidence 34568899999953321 12334455542 222345555555543322 33346 55788764 4 455543
No 325
>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}
Probab=88.62 E-value=0.55 Score=45.16 Aligned_cols=19 Identities=11% Similarity=0.223 Sum_probs=15.5
Q ss_pred cCC-cEEEEEcccCChhhhh
Q 003940 137 RDV-PIFLSIGYSTCHWCHV 155 (784)
Q Consensus 137 e~K-pI~l~~~~~wC~wC~~ 155 (784)
.|| .|++.|.++||+.|..
T Consensus 42 ~gk~vvl~~~~a~wcp~C~~ 61 (171)
T 2pwj_A 42 KDKKVVIFGLPGAYTGVCSS 61 (171)
T ss_dssp TTSEEEEEECSCTTCTTHHH
T ss_pred CCCCEEEEEecCCCCCCCCH
Confidence 354 6677899999999986
No 326
>3l9v_A Putative thiol-disulfide isomerase or thioredoxin; thioredoxin-fold, SRGA, thiol-disulfide oxidoreductase, ISOM oxidoreductase; HET: PE8 P4C P6G; 2.15A {Salmonella enterica subsp} SCOP: c.47.1.0
Probab=88.58 E-value=0.15 Score=49.98 Aligned_cols=45 Identities=16% Similarity=0.141 Sum_probs=30.5
Q ss_pred CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCC
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 182 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~e 182 (784)
++|++|.|+..||+.|+.|+...=..+++.+.+..+...++++..
T Consensus 14 ~~~~vvef~d~~Cp~C~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 58 (189)
T 3l9v_A 14 DAPAVVEFFSFYCPPCYAFSQTMGVDQAIRHVLPQGSRMVKYHVS 58 (189)
T ss_dssp TCCSEEEEECTTCHHHHHHHHTSCHHHHHHTTCCTTCCEEEEECS
T ss_pred CCCEEEEEECCCChhHHHHhHhccchHHHHHhCCCCCEEEEEech
Confidence 478999999999999999986421235776666544334444443
No 327
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=88.06 E-value=1 Score=41.14 Aligned_cols=75 Identities=13% Similarity=0.168 Sum_probs=42.2
Q ss_pred HHHHHHHhhcCCcEEEEEcc----cCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHHHHHHHHhcCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGY----STCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVYMTYVQALYGGG 202 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~----~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~ 202 (784)
.+.++..-++++ |.|+.-. +||++|+...+ .|+ .++- .|..+.| ++.|++.+.+ ...+|..
T Consensus 10 ~~~v~~~i~~~~-Vvvfsk~t~~~p~Cp~C~~ak~-lL~------~~gv~~~~~vdV--~~d~~~~~~l----~~~tg~~ 75 (118)
T 2wem_A 10 AEQLDALVKKDK-VVVFLKGTPEQPQCGFSNAVVQ-ILR------LHGVRDYAAYNV--LDDPELRQGI----KDYSNWP 75 (118)
T ss_dssp HHHHHHHHHHSS-EEEEESBCSSSBSSHHHHHHHH-HHH------HTTCCCCEEEES--SSCHHHHHHH----HHHHTCC
T ss_pred HHHHHHHhccCC-EEEEEecCCCCCccHHHHHHHH-HHH------HcCCCCCEEEEc--CCCHHHHHHH----HHHhCCC
Confidence 455666666665 4443333 49999998753 222 2332 3555544 4555554333 3345788
Q ss_pred CCCcEEEECCCCceecc
Q 003940 203 GWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 203 G~P~~vfl~pdg~pi~~ 219 (784)
.+|..+ + +|+.|.+
T Consensus 76 tvP~vf-I--~g~~IGG 89 (118)
T 2wem_A 76 TIPQVY-L--NGEFVGG 89 (118)
T ss_dssp SSCEEE-E--TTEEEES
T ss_pred CcCeEE-E--CCEEEeC
Confidence 899865 4 4566543
No 328
>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.98 E-value=0.8 Score=41.06 Aligned_cols=66 Identities=12% Similarity=-0.014 Sum_probs=36.0
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcc-cEEEEEcCCCCccHHHHHHHHHHHhc--------CCCCCCcEEEECC
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALY--------GGGGWPLSVFLSP 212 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~-FV~VkvD~ee~pdi~~~y~~~~q~~~--------g~~G~P~~vfl~p 212 (784)
++.|+.++|++|+..++ -.++.++|+++ .-...+|+++.|+..+.+ .... |...+|.. |++
T Consensus 10 V~vy~~~~C~~C~~~~~----~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l----~~~~~~~~~~~~g~~tvP~v-fi~- 79 (111)
T 2ct6_A 10 IRVFIASSSGFVAIKKK----QQDVVRFLEANKIEFEEVDITMSEEQRQWM----YKNVPPEKKPTQGNPLPPQI-FNG- 79 (111)
T ss_dssp EEEEECSSCSCHHHHHH----HHHHHHHHHHTTCCEEEEETTTCHHHHHHH----HHSCCTTTCCSSSSCCSCEE-EET-
T ss_pred EEEEEcCCCCCcccchh----HHHHHHHHHHcCCCEEEEECCCCHHHHHHH----HHHhcccccccCCCCCCCEE-EEC-
Confidence 44567899999995332 12344555543 223446666666654433 2222 55567865 443
Q ss_pred CCceec
Q 003940 213 DLKPLM 218 (784)
Q Consensus 213 dg~pi~ 218 (784)
|+.+.
T Consensus 80 -g~~iG 84 (111)
T 2ct6_A 80 -DRYCG 84 (111)
T ss_dssp -TEEEE
T ss_pred -CEEEe
Confidence 55443
No 329
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=86.92 E-value=1.4 Score=51.43 Aligned_cols=85 Identities=12% Similarity=0.064 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC----CC--CCCCCcc
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG----PS--KAPGFLD 620 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg----~~--~~~~~le 620 (784)
+-+..|||.|++++++. +..| ..++|+.|+++.+|..++- |.+.....+. .. ...++
T Consensus 291 ~~~AAalAaas~vfk~~--d~~y--------a~~~L~~A~~~~~fa~~~~-----~~y~~~~~~~~~~~~~~Y~ss~~-- 353 (609)
T 1ut9_A 291 LNFAATLAQSARLWKDY--DPTF--------AADCLEKAEIAWQAALKHP-----DIYAEYTPGSGGPGGGPYNDDYV-- 353 (609)
T ss_dssp HHHHHHHHHHHHHHTTT--CHHH--------HHHHHHHHHHHHHHHHHCT-----TCCBCCCCSSSSCBSCCCCBSCC--
T ss_pred HHHHHHHHHHHHhcccC--CHHH--------HHHHHHHHHHHHHHHHhCc-----ccccccccccCccCCCCCCCCCc--
Confidence 45677899999999762 1222 2678999999999998753 1110000000 00 11223
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 003940 621 DYAFLISGLLDLYEFGSGTKWLVWAIELQ 649 (784)
Q Consensus 621 DyA~li~aLL~LYeaTgd~~yL~~A~~L~ 649 (784)
.-.++.|.+.||.+|||+.||+.|++..
T Consensus 354 -~DEl~WAAawLy~ATgd~~Yl~~a~~~~ 381 (609)
T 1ut9_A 354 -GDEFYWAACELYVTTGKDEYKNYLMNSP 381 (609)
T ss_dssp -HHHHHHHHHHHHHHHCCHHHHHHHHTST
T ss_pred -ccHHHHHHHHHHHHhCCHHHHHHHHHhh
Confidence 3345889999999999999999998753
No 330
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=86.50 E-value=1.1 Score=45.70 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=27.8
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcC
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDR 181 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ 181 (784)
.||+|+|.|| .+||+.|.. |-..|++-- .++-+.+...|=|..
T Consensus 55 ~GK~vVL~FyP~d~TpvCt~-E~~~f~~~~-~eF~~~g~~vigiS~ 98 (219)
T 3tue_A 55 KGKWVVLFFYPLDFTFVCPT-EVIAFSDSV-SRFNELNCEVLACSI 98 (219)
T ss_dssp TTSEEEEEECSCTTCSSCCH-HHHHHHTTH-HHHHTTTEEEEEEES
T ss_pred CCCEEEEEEecccCCCCCch-hHhhHHHHH-hhhccCCcEEEEeeC
Confidence 5899999999 999999997 444555422 233333555444433
No 331
>3gzk_A Cellulase; fold from GH9 from CAZY database, glycosidase, hydrolase; 1.80A {Alicyclobacillus acidocaldarius subsp} PDB: 3ez8_A 3h2w_A* 3h3k_A* 3rx5_A* 3rx7_A* 3rx8_A*
Probab=86.45 E-value=3.6 Score=47.19 Aligned_cols=80 Identities=9% Similarity=0.080 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCC----CCCC--------CchhHHHHHHHHHHHHHHHHccCC----
Q 003940 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERW----HVPH--------FEKMLYDQGQLANVYLDAFSLTKD---- 398 (784)
Q Consensus 335 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W----~vPH--------FEKMLyDNA~Ll~~ya~Ay~~t~d---- 398 (784)
+++++.+.--+|=|.+ .++.-.|++|.-..|..| ..|+ +.+---.++.++.+++.|++++++
T Consensus 188 ~d~ldeikwg~D~llk--~~~~~~g~~y~~v~~~~w~g~~~~Pe~~~~~R~~~~~~t~~~~~~AAalA~as~vf~~~D~~ 265 (537)
T 3gzk_A 188 PPALEVAREEIAWLLT--MQDPATGGVYHKVTTPSFPPLDTRPEDDDAPLVLSPISYAATATFCAAMAHAALVYRPFDPA 265 (537)
T ss_dssp CHHHHHHHHHHHHHHH--TBCTTTCCBBSEEECSSCCCTTCCGGGCCSCEEECCBCHHHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHHHHHHHh--cccCCCCeEEEEecCCCcCCCCcCcccCCCcceEeecCCcHHHHHHHHHHHHHHhhcccCHH
Confidence 5788888888888776 444333555543446677 3443 233334589999999999999997
Q ss_pred --hHHHHHHHHHHHHHHHhc
Q 003940 399 --VFYSYICRDILDYLRRDM 416 (784)
Q Consensus 399 --~~y~~~A~~t~~fl~~~m 416 (784)
..|++.|+++++|+.++.
T Consensus 266 yA~~~L~~A~~~~~fa~~~~ 285 (537)
T 3gzk_A 266 LSSCCADAARRAYAWLGAHE 285 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 788999999999998743
No 332
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=85.67 E-value=1.2 Score=41.06 Aligned_cols=55 Identities=13% Similarity=0.244 Sum_probs=30.9
Q ss_pred HHHHHHHhhcCCcEEEEEcc---cCChhhhhhhhcccCCHHHHHHHhc-ccEEEEEcCCCCccHHHHH
Q 003940 128 EEAFAEARKRDVPIFLSIGY---STCHWCHVMEVESFEDEGVAKLLND-WFVSIKVDREERPDVDKVY 191 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~---~wC~wC~~Me~etf~d~eVa~~ln~-~FV~VkvD~ee~pdi~~~y 191 (784)
.|.++..-++|+-|+.+=+. +.|++|++..+ .| +.++- .|.. +|+.+.|++.+..
T Consensus 10 ~e~i~~~i~~~~VvvF~Kgt~~~P~C~fc~~ak~-lL------~~~gv~~~~~--~~v~~~~~~r~~l 68 (118)
T 2wul_A 10 AEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQ-IL------RLHGVRDYAA--YNVLDDPELRQGI 68 (118)
T ss_dssp HHHHHHHHHHSSEEEEESBCSSSBSSHHHHHHHH-HH------HHTTCCSCEE--EETTSCHHHHHHH
T ss_pred HHHHHHHHhcCCEEEEEcCCCCCCCCHHHHHHHH-HH------HHhCCcCeEe--ecccCCHHHHHHH
Confidence 56667777777655444343 57999998652 22 12221 3544 4556667765443
No 333
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=84.73 E-value=0.58 Score=45.71 Aligned_cols=40 Identities=13% Similarity=0.026 Sum_probs=29.2
Q ss_pred CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCC
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDRE 182 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~e 182 (784)
+||++|.|+..||+.|+.++. ++ +++.+.+ +.+.+++.+.
T Consensus 22 ~~~~vvef~d~~Cp~C~~~~~-~~--~~~~~~~--~v~~~~~p~~ 61 (185)
T 3feu_A 22 GMAPVTEVFALSCGHCRNMEN-FL--PVISQEA--GTDIGKMHIT 61 (185)
T ss_dssp CCCSEEEEECTTCHHHHHHGG-GH--HHHHHHH--TSCCEEEECC
T ss_pred CCCEEEEEECCCChhHHHhhH-HH--HHHHHHh--CCeEEEEecc
Confidence 689999999999999999985 44 4666655 3444455544
No 334
>1g87_A Endocellulase 9G; endoglucanase, cellulose binding domain, (ALPH 6-helix barrel, beta barrel, hydrolase; 1.60A {Clostridium cellulolyticum} SCOP: a.102.1.2 b.2.2.2 PDB: 1ga2_A* 1k72_A* 1kfg_A*
Probab=84.19 E-value=37 Score=39.46 Aligned_cols=148 Identities=14% Similarity=0.123 Sum_probs=89.2
Q ss_pred cCCCC---CCCCCCCChhHH--HHHH-Hhhhh---ccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCCeEEEEecC--
Q 003940 299 RFGGF---GSAPKFPRPVEI--QMML-YHSKK---LEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVD-- 367 (784)
Q Consensus 299 ~~GGf---g~aPKFP~p~~l--~~Ll-~~~~~---~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD-- 367 (784)
..||| |.--||-.|... ..|+ -+... -...+ .-+++++.+.--+|=|.+- +...|+|+.-.-|
T Consensus 49 lsGGwyDAGD~~Kf~~p~a~t~~~L~w~~~e~~~~~~~~g---~~~d~ldeikwg~Dyllk~---~~~~~~~y~qVGdg~ 122 (614)
T 1g87_A 49 LTGGWYDAGDHVKFNLPMSYTSAMLAWSLYEDKDAYDKSG---QTKYIMDGIKWANDYFIKC---NPTPGVYYYQVGDGG 122 (614)
T ss_dssp CCCSBCCSSSCCEEHHHHHHHHHHHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHT---CCSTTCEEEEESCHH
T ss_pred CCCCeeeCCCCcEeccccHHHHHHHHHHHHHhHHHHhhCC---ChHHHHHHHHHHHHHHHHh---ccCCCcEEEEecCCC
Confidence 57888 555788776532 1222 11111 00111 2368888888888888773 3345677752223
Q ss_pred ---CCCCCCCCchhH--------------HH-HHHHHHHHHHHHHccCC------hHHHHHHHHHHHHHHHhcc----CC
Q 003940 368 ---ERWHVPHFEKML--------------YD-QGQLANVYLDAFSLTKD------VFYSYICRDILDYLRRDMI----GP 419 (784)
Q Consensus 368 ---~~W~vPHFEKML--------------yD-NA~Ll~~ya~Ay~~t~d------~~y~~~A~~t~~fl~~~m~----~~ 419 (784)
..|..| |.|- .| .+..+.+++.|++++++ ..+++.|++..+|..++-- ..
T Consensus 123 ~DH~~w~~p--e~~~~~r~~y~v~~~~pgsd~a~e~AAAlAaAS~vfk~~D~~yA~~~L~~Ak~l~~fA~~~~~~~~~~~ 200 (614)
T 1g87_A 123 KDHSWWGPA--EVMQMERPSFKVDASKPGSAVCASTAASLASAAVVFKSSDPTYAEKCISHAKNLFDMADKAKSDAGYTA 200 (614)
T ss_dssp HHHTCCSCG--GGCCSCCCEEEECSSSCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHCCCTTCCT
T ss_pred cCccccCCc--ccCCCCCcceEecCCCCccHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 256655 3331 24 68899999999999975 4567789999999988531 11
Q ss_pred CCceeecccCCCccccccccccCCceEEechHHHHHHhhhh--HHHHHHH
Q 003940 420 GGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH--AILFKEH 467 (784)
Q Consensus 420 ~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~--~~l~~~~ 467 (784)
.+|||.+ .... .- ++|...|+..++|+. .+.+..+
T Consensus 201 ~~~~Y~s-s~~~-----------DE-l~WAAawLy~ATgd~~Yl~~a~~~ 237 (614)
T 1g87_A 201 ASGYYSS-SSFY-----------DD-LSWAAVWLYLATNDSTYLDKAESY 237 (614)
T ss_dssp TTTTSCC-SCSH-----------HH-HHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred CcCCcCC-CCch-----------hH-HHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2567764 1111 11 379999999999964 3344443
No 335
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=82.27 E-value=28 Score=40.44 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCCCcccCCCeEEEEecC--CCCC--CCCCc--------hhHHHHHHHHHHHHHHHHccCChHHHHH
Q 003940 337 GQKMVLFTLQCMAKGGIHDHVGGGFHRYSVD--ERWH--VPHFE--------KMLYDQGQLANVYLDAFSLTKDVFYSYI 404 (784)
Q Consensus 337 ~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD--~~W~--vPHFE--------KMLyDNA~Ll~~ya~Ay~~t~d~~y~~~ 404 (784)
..+.+.+.++-+.. .. .-+|||-.|..+ ..|. +| |+ --+.+.|..+.++... +.+.+...
T Consensus 396 ~~~~l~~a~~wLls--~Q-~~dGgf~~~~~~~~~~~~~~~~-F~~~~~~~d~~~vd~Ta~vl~aL~~~----g~~~~~~~ 467 (631)
T 2sqc_A 396 RRDAMTKGFRWIVG--MQ-SSNGGWGAYDVDNTSDLPNHIP-FSDFGEVTDPPSEDVTAHVLECFGSF----GYDDAWKV 467 (631)
T ss_dssp HHHHHHHHHHHHHH--TC-CTTSCBCSSCSSCCCSGGGGST-TCSSSCSSCCCBHHHHHHHHHHHHTT----TCCTTSHH
T ss_pred hHHHHHHHHHHHHh--hc-CCCCCCCccCCCCccccccccc-cccCCcccCCCCchHHHHHHHHHHhc----CCCccHHH
Confidence 34455555555544 11 135888544433 2232 23 22 1245688888877753 45566778
Q ss_pred HHHHHHHHHHhccCCCCceee
Q 003940 405 CRDILDYLRRDMIGPGGEIFS 425 (784)
Q Consensus 405 A~~t~~fl~~~m~~~~Ggfys 425 (784)
++++++||.+ ++.++||||.
T Consensus 468 i~rai~~L~~-~Q~~DGsw~g 487 (631)
T 2sqc_A 468 IRRAVEYLKR-EQKPDGSWFG 487 (631)
T ss_dssp HHHHHHHHHH-HCCTTSCCCC
T ss_pred HHHHHHHHHH-hcCCCCCCCC
Confidence 8999999986 6788999864
No 336
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=80.78 E-value=1.2 Score=48.06 Aligned_cols=43 Identities=9% Similarity=0.044 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccCCCCcee
Q 003940 381 DQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIGPGGEIF 424 (784)
Q Consensus 381 DNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~~~Ggfy 424 (784)
|.|..+.+++++|..++++.|++++.++++||+. |+.++||+-
T Consensus 75 dTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~-mQ~~nGGWp 117 (332)
T 1gxm_A 75 ATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVN-SQYSTGALP 117 (332)
T ss_dssp TTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-HCCTTSCCB
T ss_pred cHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh-ccCCCCCcc
Confidence 4788899999999999999999999999999997 999999974
No 337
>1ut9_A Cellulose 1,4-beta-cellobiosidase; hydrolase, glycoside hydrolase, family 9, cellobiohydrolase; 2.1A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2 PDB: 1rq5_A*
Probab=80.58 E-value=15 Score=42.70 Aligned_cols=118 Identities=15% Similarity=0.199 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHcCCCccc------CCCeEEEEecCCCCC----CCCCchh--------HHHHHHHHHHHHHHHHcc
Q 003940 335 SEGQKMVLFTLQCMAKGGIHDH------VGGGFHRYSVDERWH----VPHFEKM--------LYDQGQLANVYLDAFSLT 396 (784)
Q Consensus 335 ~~~~~~~~~TL~~m~~GGi~D~------v~GGF~RYsvD~~W~----vPHFEKM--------LyDNA~Ll~~ya~Ay~~t 396 (784)
+++++.+.--+|=|.+ .++. +.|+.+--.+|..|. .|.-..+ ----+.++.+++.|++++
T Consensus 227 ~d~ldeikwg~D~llk--~q~~~g~~~~~~g~v~~~~~D~~w~g~~~~Pe~~~~~R~~~~p~t~~~~~~AAalAaas~vf 304 (609)
T 1ut9_A 227 PDILDEARWEIEFFKK--MQVTEKEDPSIAGMVHHKIHDFRWTALGMLPHEDPQPRYLRPVSTAATLNFAATLAQSARLW 304 (609)
T ss_dssp CHHHHHHHHHHHHHHH--HBCCTTTCGGGTTCEECEEEESSCCCSSCCGGGCCSBEEECCEEHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--hccCCCCcceEEEEecCCCCCcccCCCCCChhhCCCceeecCCCcHHHHHHHHHHHHHHHhc
Confidence 5777777777666655 2332 224555456677784 3432211 112456788899999998
Q ss_pred CC------hHHHHHHHHHHHHHHHhc--cC--------CCCceeecccCCCccccccccccCCceEEechHHHHHHhhhh
Q 003940 397 KD------VFYSYICRDILDYLRRDM--IG--------PGGEIFSAEDADSAETEGATRKKEGAFYVWTSKEVEDILGEH 460 (784)
Q Consensus 397 ~d------~~y~~~A~~t~~fl~~~m--~~--------~~Ggfysa~DADS~~~~~~~~~~EGayY~Wt~~Ei~~~Lg~~ 460 (784)
++ ..+++.|++.++|..++- .. ..+|||.+.+ ++-- ++|...|++.++|+.
T Consensus 305 k~~d~~ya~~~L~~A~~~~~fa~~~~~~y~~~~~~~~~~~~~~Y~ss~------------~~DE-l~WAAawLy~ATgd~ 371 (609)
T 1ut9_A 305 KDYDPTFAADCLEKAEIAWQAALKHPDIYAEYTPGSGGPGGGPYNDDY------------VGDE-FYWAACELYVTTGKD 371 (609)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHCTTCCBCCCCSSSSCBSCCCCBSC------------CHHH-HHHHHHHHHHHHCCH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhCcccccccccccCccCCCCCCCCC------------cccH-HHHHHHHHHHHhCCH
Confidence 64 456788999999998742 10 0134664311 0001 379999999999965
Q ss_pred --HHHHHHH
Q 003940 461 --AILFKEH 467 (784)
Q Consensus 461 --~~l~~~~ 467 (784)
.+.+...
T Consensus 372 ~Yl~~a~~~ 380 (609)
T 1ut9_A 372 EYKNYLMNS 380 (609)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHHh
Confidence 3444444
No 338
>1clc_A Endoglucanase CELD; EC: 3.2.1.4; cellulase, glycosyl hydrolase; 1.90A {Clostridium thermocellum} SCOP: a.102.1.2 b.1.18.2
Probab=79.87 E-value=45 Score=38.96 Aligned_cols=161 Identities=11% Similarity=0.038 Sum_probs=89.2
Q ss_pred hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCC-CeEEEEecCCCCCCCCCc--
Q 003940 543 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQT-HRLQHSFRNGPSKAPGFL-- 619 (784)
Q Consensus 543 tsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~-G~l~~~~~dg~~~~~~~l-- 619 (784)
+.-.|..++.|+.++.-+++.-....+|-|-.+-..+..++.++-.++||++.. +++. |.++|...++.-.....+
T Consensus 196 ~~p~a~t~~~L~w~~~~~~~~~~~~~~~ipes~~~~~d~ldeikwg~Dyllk~q-~~~~~g~~y~~vgd~~~~~~~~Pe~ 274 (639)
T 1clc_A 196 VVNAGITVGSMFLAWEHFKDQLEPVALEIPEKNNSIPDFLDELKYEIDWILTMQ-YPDGSGRVAHKVSTRNFGGFIMPEN 274 (639)
T ss_dssp HHHHHHHHHHHHHHHHHSHHHHTTCCCSSGGGGSSSCHHHHHHHHHHHHHHTTB-CTTSSCCBEEEEECSSCCCSCCGGG
T ss_pred CccHHHHHHHHHHHHHHhhhhhhccccCCccCCCcHHHHHHHHHHHHHHHHHhc-cccCCCeEEEEecCCCCCCCCCchh
Confidence 334677788888887766542100001111001123789999999999999854 4455 889997644311100111
Q ss_pred ------------chHHHHHHHHHHHHHHcC--CH----HHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccC
Q 003940 620 ------------DDYAFLISGLLDLYEFGS--GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKED 681 (784)
Q Consensus 620 ------------eDyA~li~aLL~LYeaTg--d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~ 681 (784)
+--+.++.+|...+.+.. |+ ++|+.|+++++.+.++ .|.+|..+...
T Consensus 275 ~~~~R~~~~~~s~~a~e~AAAlAaAS~vfk~~D~~yA~~~L~~Ak~l~~fA~~~-----~~~~y~~~~~~---------- 339 (639)
T 1clc_A 275 EHDERFFVPWSSAATADFVAMTAMAARIFRPYDPQYAEKCINAAKVSYEFLKNN-----PANVFANQSGF---------- 339 (639)
T ss_dssp CCSCCEEEEECHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHC-----CSCCCCCCTTC----------
T ss_pred cCCCceEecCCcHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHc-----CCCccCCCccc----------
Confidence 122455556666666654 44 5688888888887663 23333211000
Q ss_pred CCCCCCChh--HHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 003940 682 HDGAEPSGN--SVSVINLVRLASIVAGSKSDYYRQNAEHSLAV 722 (784)
Q Consensus 682 ~D~a~PS~N--sv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~ 722 (784)
.-+.+.|.+ --++-+-..|++.||+ ..|++.+++....
T Consensus 340 ~~g~Y~ss~~~DEl~WAAawLy~ATgd---~~Yl~~a~~~~~~ 379 (639)
T 1clc_A 340 STGEYATVSDADDRLWAAAEMWETLGD---EEYLRDFENRAAQ 379 (639)
T ss_dssp CSCCCCCSCSHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHT
T ss_pred cccccCCCCcchHHHHHHHHHHHHhCC---HHHHHHHHHHHHh
Confidence 001112211 2245566788999986 8899999875543
No 339
>2xfg_A Endoglucanase 1; hydrolase-sugar binding protein complex, family-9 glycoside hydrolase, hydrolase, sugar binding protein; 1.68A {Clostridium thermocellum}
Probab=79.37 E-value=37 Score=38.08 Aligned_cols=119 Identities=16% Similarity=0.062 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCC--------CC-C----CC--------CCcchHHHHHHHHHHHHHHcC
Q 003940 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG--------PS-K----AP--------GFLDDYAFLISGLLDLYEFGS 637 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg--------~~-~----~~--------~~leDyA~li~aLL~LYeaTg 637 (784)
+..++.++-.++||++. +++.|.+++...++ .+ . .+ .-.+--+.++.+|...+.+..
T Consensus 112 ~d~ldeikwg~D~llk~--~~~~~~~y~qVgd~~~Dh~~W~~pe~~~~~R~~y~i~~~~pgsd~a~e~AAAlAaAS~vfk 189 (466)
T 2xfg_A 112 NHILNNIKWACDYFIKC--HPEKDVYYYQVGDGHADHAWWGPAEVMPMERPSYKVDRSSPGSTVVAETSAALAIASIIFK 189 (466)
T ss_dssp HHHHHHHHHHHHHHHHT--CSBTTEEEEEESCHHHHHTCCSCGGGCCSCCCEEEEESSSCCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHh--ccCCCcEEEEeCCCCccccccCCcccCCCCCceeEecCCCCccHHHHHHHHHHHHHHHhcc
Confidence 78999999999999987 34568888876553 11 0 01 112223566667777777765
Q ss_pred --C----HHHHHHHHHHHHHHHHhccc---cCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCCC
Q 003940 638 --G----TKWLVWAIELQNTQDELFLD---REGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSK 708 (784)
Q Consensus 638 --d----~~yL~~A~~L~~~~~~~F~D---~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~ 708 (784)
| .++|+.|+++++.+..+--+ ...++||.+.. .-.--++-+-..|++.||+
T Consensus 190 ~~D~~yA~~~L~~Ak~l~~fA~~~~~~~~~~~~~~~Y~s~s------------------~~~DEl~WAAawLy~ATgd-- 249 (466)
T 2xfg_A 190 KVDGEYSKECLKHAKELFEFADTTKSDDGYTAANGFYNSWS------------------GFYDELSWAAVWLYLATND-- 249 (466)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHCCCTTCCTTTTTSCCSS------------------CSHHHHHHHHHHHHHHHCC--
T ss_pred ccCHHHHHHHHHHHHHHHHHHHhcCCcCCCCccccccCCCC------------------CCchHHHHHHHHHHHHhCC--
Confidence 3 35688999999888775310 11122332200 0011245566788999986
Q ss_pred chHHHHHHHHHH
Q 003940 709 SDYYRQNAEHSL 720 (784)
Q Consensus 709 ~~~y~e~A~~~l 720 (784)
..|++.+++..
T Consensus 250 -~~Yl~~a~~~~ 260 (466)
T 2xfg_A 250 -SSYLDKAESYS 260 (466)
T ss_dssp -HHHHHHHHHTT
T ss_pred -HHHHHHHHHHH
Confidence 78999887643
No 340
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=79.06 E-value=10 Score=41.39 Aligned_cols=51 Identities=10% Similarity=-0.025 Sum_probs=37.9
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 003940 542 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 607 (784)
Q Consensus 542 itsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~ 607 (784)
+++|-..+...+++.++++|+. ..+|.+.|.++.+.+.+ |||++.|.++..
T Consensus 237 lna~~~~~~~~la~la~~lg~~--------------a~~~~~~a~~~~~ai~~-~Wd~~~g~~~d~ 287 (420)
T 2z07_A 237 FNAILQRANRDLYALAVLLQED--------------PYEIEEWIVRGEVGLEA-LWDREAGFYFSW 287 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC--------------CHHHHHHHHHHHHHHHH-TEETTTTEECCE
T ss_pred HHHHHHHHHHHHHHHHHHhCcc--------------HHHHHHHHHHHHHHHHH-hhCcccCeeEee
Confidence 3444444556777778888762 27899999999999999 999887766543
No 341
>4f9z_D Endoplasmic reticulum resident protein 27; thioredoxin fold, ER foldase, ERP57, binding protein; HET: PE3 PE4; 2.20A {Homo sapiens} PDB: 2l4c_A
Probab=77.91 E-value=6.7 Score=39.01 Aligned_cols=77 Identities=14% Similarity=0.005 Sum_probs=50.4
Q ss_pred HHHHHHHhhcCCcEE-EEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCC--CccHHHHHHHHHHHhcCCC--
Q 003940 128 EEAFAEARKRDVPIF-LSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREE--RPDVDKVYMTYVQALYGGG-- 202 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~-l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee--~pdi~~~y~~~~q~~~g~~-- 202 (784)
.+.+.+--+.+.|+. |.|...||.-|..+.. .|. +||+.....+..+.+|.++ .+.+.+. .|..
T Consensus 120 ~~n~~~~~~~~~~~~~l~f~~~~~~~~~~~~~-~~~--~vAk~~k~~i~F~~vd~~~~~~~~~l~~--------fgl~~~ 188 (227)
T 4f9z_D 120 PVTVIGLFNSVIQIHLLLIMNKASPEYEENMH-RYQ--KAAKLFQGKILFILVDSGMKENGKVISF--------FKLKES 188 (227)
T ss_dssp HHHHHHHHHSSCCEEEEEEECTTSTTHHHHHH-HHH--HHHHHTTTTCEEEEEETTSGGGHHHHHH--------TTCCGG
T ss_pred cccHHHHhccCCceEEEEEEcCCcchHHHHHH-HHH--HHHHHhhCCEEEEEeCCccHhHHHHHHH--------cCCCcc
Confidence 444444445665654 4566779999987653 443 5888777778888899864 2333222 2665
Q ss_pred CCCcEEEECCCCc
Q 003940 203 GWPLSVFLSPDLK 215 (784)
Q Consensus 203 G~P~~vfl~pdg~ 215 (784)
++|+.++++..+.
T Consensus 189 ~~P~~~i~~~~~~ 201 (227)
T 4f9z_D 189 QLPALAIYQTLDD 201 (227)
T ss_dssp GCSEEEEEESSSC
T ss_pred cCCEEEEEECCCC
Confidence 8999999997543
No 342
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=75.66 E-value=2 Score=47.56 Aligned_cols=42 Identities=14% Similarity=0.037 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHc-c--CChHHHHHHHHHHHHHHHhccCCCCcee
Q 003940 382 QGQLANVYLDAFSL-T--KDVFYSYICRDILDYLRRDMIGPGGEIF 424 (784)
Q Consensus 382 NA~Ll~~ya~Ay~~-t--~d~~y~~~A~~t~~fl~~~m~~~~Ggfy 424 (784)
.+..+.+++++|+. + +++.|++++.++++||+. |+.++||+-
T Consensus 151 Ta~vl~aL~rv~~~~t~~~~~~y~~Ai~Rgl~wlL~-mQ~~nGGWp 195 (408)
T 1r76_A 151 TVTEIRFLAQVVSQLAPEEAAPYRDAALKGIEYLLA-SQFPNGGWP 195 (408)
T ss_dssp THHHHHHHHHHHHHSCGGGCHHHHHHHHHHHHHHHH-HSCTTSCCB
T ss_pred HHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHH-ccCCCCCCc
Confidence 67889999999998 7 899999999999999997 999999974
No 343
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=75.40 E-value=22 Score=43.40 Aligned_cols=113 Identities=18% Similarity=0.204 Sum_probs=72.1
Q ss_pred hhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEE---EecCCC----C
Q 003940 541 VIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQH---SFRNGP----S 613 (784)
Q Consensus 541 iitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~---~~~dg~----~ 613 (784)
.+..|..+.+.++.+.++.+||.. | .++.....++.++|+.++. ++ +|.+.. .+.+.. +
T Consensus 625 ~~~~~~~~~i~~~~~yy~~tGD~~----~--------L~e~yp~lk~~l~~~~~~~-d~-~GLl~~~~~~~~DW~d~~~~ 690 (956)
T 2okx_A 625 VIPNWTFFWILACREYAAHTGNEA----F--------AARIWPAVKHTLTHYLEHI-DD-SGLLNMAGWNLLDWAPIDQP 690 (956)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHH----H--------HHHHHHHHHHHHHHHHTTB-CT-TSSBCCSSCCCCCSSSCCCC
T ss_pred CCcChHHHHHHHHHHHHHHhCCHH----H--------HHHHHHHHHHHHHHHHhcC-CC-CCCEEeCCCCccCccCCCCC
Confidence 345688889999999999999831 1 1445567778888887754 43 343321 111110 0
Q ss_pred CCCCCcchHHHHH---HHHHHHHHHcCCH----HHHHHHHHHHHHHHHhccccCCCccccc
Q 003940 614 KAPGFLDDYAFLI---SGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNT 667 (784)
Q Consensus 614 ~~~~~leDyA~li---~aLL~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 667 (784)
.........+++. ..+.++.++.|++ +|.+.|.++.+.+.++|||++.|.|.+.
T Consensus 691 ~~G~~~~~~a~~~~al~~~a~lA~~LG~~~~a~~y~~~A~~lk~ai~~~~wd~~~g~y~d~ 751 (956)
T 2okx_A 691 NEGIVTHQNLFLVKALRDSRALAAAAGATEEADAFAARADLLAETINAVLWDEEKRAYIDC 751 (956)
T ss_dssp SSSEEHHHHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHHHHSEETTTTEECSE
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEee
Confidence 1111234555544 4455666777763 5899999999999999999876666543
No 344
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1
Probab=75.30 E-value=33 Score=37.87 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHH-h--hhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC--CCCCCcch
Q 003940 547 GLVISSFARASKI-L--KSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS--KAPGFLDD 621 (784)
Q Consensus 547 al~I~ALa~a~~~-~--~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~--~~~~~leD 621 (784)
+..|.+|++++.. . ++ +.|.+++.+..+||+..-+. +||.-..+.+... ..-.|-+|
T Consensus 152 a~vl~aL~rv~~~~t~~~~----------------~~y~~Ai~Rgl~wlL~mQ~~--nGGWpqFdpdn~~y~~~IpFnDD 213 (408)
T 1r76_A 152 VTEIRFLAQVVSQLAPEEA----------------APYRDAALKGIEYLLASQFP--NGGWPQVWPLEGGYHDAITYNDD 213 (408)
T ss_dssp HHHHHHHHHHHHHSCGGGC----------------HHHHHHHHHHHHHHHHHSCT--TSCCBSBSSCCCGGGGSEECGGG
T ss_pred HHHHHHHHHHHhhcccccc----------------HHHHHHHHHHHHHHHHccCC--CCCCcCcCccccccccCCCcCcH
Confidence 7889999999987 5 44 78999999999999988765 5654333222211 11133334
Q ss_pred H-HHHHHHHHHHHHHcC-----CH----HHHHHHHHHHHHHHHhccccCCCccc
Q 003940 622 Y-AFLISGLLDLYEFGS-----GT----KWLVWAIELQNTQDELFLDREGGGYF 665 (784)
Q Consensus 622 y-A~li~aLL~LYeaTg-----d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf 665 (784)
- +.+++.|..+++..+ ++ +....+.+-.+.+...-. +.+|.+|
T Consensus 214 vt~rvle~L~~~~~~~~~~~~~~~~~~~~~~~av~Rgi~~Ll~~Qe-~~dGsw~ 266 (408)
T 1r76_A 214 ALVHVAELLSDIAAGRDGFGFVPPAIRTRALEATNAAIHCIVETQV-VQDGKRL 266 (408)
T ss_dssp HHHHHHHHHHHHHHTCTTCTTSCHHHHHHHHHHHHHHHHHHHHHSC-EETTEEC
T ss_pred HHHHHHHHHHHHHhccCcccccchhhhhhHHHHHHHHHHHHHHhhc-ccCCccc
Confidence 3 566666767766333 33 344444444444444332 2246555
No 345
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Probab=74.96 E-value=20 Score=42.61 Aligned_cols=157 Identities=13% Similarity=0.040 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC--C----------CeEEEEecCCCCC
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ--T----------HRLQHSFRNGPSK 614 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~--~----------G~l~~~~~dg~~~ 614 (784)
++++.||.+++. ..+ +++.+..+++.+||++...... + |++-..+.+ .
T Consensus 390 alal~AL~~ag~-~~~----------------~~~~~~l~ka~~~L~~~Q~~~~~~d~~~~~r~~~~GGW~f~~~~---~ 449 (732)
T 1w6k_A 390 AFAIQALLEAGG-HHR----------------PEFSSCLQKAHEFLRLSQVPDNPPDYQKYYRQMRKGGFSFSTLD---C 449 (732)
T ss_dssp HHHHHHHHHTTG-GGC----------------GGGHHHHHHHHHHHHHHSCCCCCTTGGGGTCCCCTTCCBSSCTT---T
T ss_pred HHHHHHHHHcCC-Ccc----------------hhhHHHHHHHHHHHHHhcccccCCcccccccCCCCCeecCCCCC---C
Confidence 888999999863 222 4677889999999987654321 1 332211111 1
Q ss_pred CCCCcchHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHhccccCCCcccccCC-CCCcccc--cccc-----CCC
Q 003940 615 APGFLDDYAFLISGLLDLYEFGS---GTKWLVWAIELQNTQDELFLDREGGGYFNTTG-EDPSVLL--RVKE-----DHD 683 (784)
Q Consensus 615 ~~~~leDyA~li~aLL~LYeaTg---d~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~-~~~~l~~--R~k~-----~~D 683 (784)
.....++-|+++.+|..+....+ +....+...+..+.+...- . .+|+|-.... .+...+. .+.+ ..|
T Consensus 450 ~~pd~d~TA~vl~aL~~~~~~~~~~g~~~~~~~i~~av~wLls~Q-~-~DGgw~a~~~~~~~~~l~~i~~~e~fg~~~~d 527 (732)
T 1w6k_A 450 GWIVSDCTAEALKAVLLLQEKCPHVTEHIPRERLCDAVAVLLNMR-N-PDGGFATYETKRGGHLLELLNPSEVFGDIMID 527 (732)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHCTTCCSCCCHHHHHHHHHHHHTTC-C-TTSCBCSSSCCCSCGGGGGGCCCSSCSSCSSC
T ss_pred CCCccccHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhc-C-CCCCEEeecCCCchHHHhhCcchhcccccccC
Confidence 23456678999999999988753 2333344445555555543 2 3577732111 1111110 0011 112
Q ss_pred CCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003940 684 GAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (784)
Q Consensus 684 ~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~ 725 (784)
...+..++..+.+|..+.....+...+.+....++.++.+..
T Consensus 528 ~s~v~~Ta~vL~aL~~~~~~~~~~~~~~~~~~i~rAv~yL~~ 569 (732)
T 1w6k_A 528 YTYVECTSAVMQALKYFHKRFPEHRAAEIRETLTQGLEFCRR 569 (732)
T ss_dssp CCBHHHHHHHHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHhccccccccchhhHHHHHHHHHHHHh
Confidence 233445556666777666553221113345555666665544
No 346
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=74.73 E-value=5.5 Score=45.69 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=44.3
Q ss_pred HHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCC-ccHHHHHHHHHHHhcCCCCCCcE
Q 003940 129 EAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREER-PDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 129 eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~-pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
+.+++..++++ ++-|+.+||++|+...+ +.+.++-.|..|.||.++. +++ .+.++..+|...+|..
T Consensus 9 ~~v~~~i~~~~--v~vy~~~~Cp~C~~~k~-------~L~~~~i~~~~~dv~~~~~~~~~----~~~l~~~~g~~tvP~v 75 (598)
T 2x8g_A 9 QWLRKTVDSAA--VILFSKTTCPYCKKVKD-------VLAEAKIKHATIELDQLSNGSAI----QKCLASFSKIETVPQM 75 (598)
T ss_dssp HHHHHHHHHCS--EEEEECTTCHHHHHHHH-------HHHHTTCCCEEEEGGGSTTHHHH----HHHTHHHHSCCCSCEE
T ss_pred HHHHHHhccCC--EEEEECCCChhHHHHHH-------HHHHCCCCcEEEEcccCcchHHH----HHHHHHHhCCceeCEE
Confidence 55666666665 45688899999997653 2223333566666665432 333 3333444588889976
Q ss_pred EEECCCCceecc
Q 003940 208 VFLSPDLKPLMG 219 (784)
Q Consensus 208 vfl~pdg~pi~~ 219 (784)
+ + +|+.+.+
T Consensus 76 ~-i--~g~~igG 84 (598)
T 2x8g_A 76 F-V--RGKFIGD 84 (598)
T ss_dssp E-E--TTEEEEC
T ss_pred E-E--CCEEEEe
Confidence 4 3 4555543
No 347
>1wzz_A Probable endoglucanase; glycoside hydrolase family 8 (GH-8), (alpha/alpha)6 barrel, structural genomics; 1.65A {Gluconacetobacter xylinus} SCOP: a.102.1.2
Probab=73.80 E-value=7.1 Score=42.00 Aligned_cols=97 Identities=13% Similarity=0.094 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCC---CCcchH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAP---GFLDDY 622 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~~~~---~~leDy 622 (784)
-.+++||..|++.-++ +.|.+.|+++++.|.++-..+..|.+.-. ...|-.... -.++++
T Consensus 109 l~IA~ALl~A~~~Wg~----------------~~Y~~~A~~il~~i~~~~v~~~~g~~~llPg~~gf~~~~~~~~npSY~ 172 (334)
T 1wzz_A 109 LLIALALGRAGKRFQR----------------PDYIQDAMAIYGDVLNLMTMKAGPYVVLMPGAVGFTKKDSVILNLSYY 172 (334)
T ss_dssp HHHHHHHHHHHHHHTC----------------HHHHHHHHHHHHHHHHHHEEEETTEEEECSCSSSCBCSSEEEECGGGC
T ss_pred HHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhcccCCCCeEEECCCcccccCCCCCeechhhc
Confidence 4789999999999987 78999999999999887665444543321 111111100 012222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCC
Q 003940 623 AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGG 662 (784)
Q Consensus 623 A~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~G 662 (784)
+..++-.+++.+++..|.+.+....+.+.+... +..|
T Consensus 173 --~p~~~~~fa~~~~~~~W~~~~~~~~~ll~~~~~-~~tG 209 (334)
T 1wzz_A 173 --VMPSLLQAFDLTADPRWRQVMEDGIRLVSAGRF-GQWR 209 (334)
T ss_dssp --CHHHHHHHHHHHCCTHHHHHHHHHHHHHHHSCB-TTTT
T ss_pred --CHHHHHHHHHccCCchHHHHHHHHHHHHHHccc-CCCC
Confidence 225666677889999999999988888876543 3344
No 348
>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}
Probab=73.41 E-value=6 Score=38.69 Aligned_cols=26 Identities=8% Similarity=0.152 Sum_probs=17.1
Q ss_pred cCCcE-EEEEcccCChhhhhhhhcccC
Q 003940 137 RDVPI-FLSIGYSTCHWCHVMEVESFE 162 (784)
Q Consensus 137 e~KpI-~l~~~~~wC~wC~~Me~etf~ 162 (784)
.||+| ++.|-++||+.|..-|--.|.
T Consensus 46 ~Gk~vVL~fyP~~~tp~Ct~~El~~f~ 72 (176)
T 4f82_A 46 AGKRVVIFGLPGAFTPTCSAQHVPGYV 72 (176)
T ss_dssp TTCEEEEEEESCTTCHHHHHTHHHHHH
T ss_pred CCCeEEEEEEcCCCCCCCCHHHHHHHH
Confidence 36765 556679999999873333444
No 349
>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}
Probab=71.30 E-value=4.7 Score=43.94 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=40.7
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhccc--EE-EEEcC-CCCccHHHHHHHHHHHhcCCCC
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWF--VS-IKVDR-EERPDVDKVYMTYVQALYGGGG 203 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~F--V~-VkvD~-ee~pdi~~~y~~~~q~~~g~~G 203 (784)
.+.++.+.++++ | +-|+.+||++|+...+..++.-.| .| |. +.+|. ++.+++ +..++..+|...
T Consensus 251 ~~~V~~lI~~~~-V-vVYsk~~CPyC~~Ak~~LL~~~gV------~y~eidVlEld~~~~~~e~----~~~L~~~tG~~T 318 (362)
T 2jad_A 251 IKHVKDLIAENE-I-FVASKTYCPYSHAALNTLFEKLKV------PRSKVLVLQLNDMKEGADI----QAALYEINGQRT 318 (362)
T ss_dssp HHHHHHHHHTCS-E-EEEECTTCHHHHHHHHHHHTTTCC------CTTTEEEEEGGGSTTHHHH----HHHHHHHHCCCS
T ss_pred HHHHHHHhccCC-E-EEEEcCCCcchHHHHHHHHHHcCC------CcceEEEEEeccccCCHHH----HHHHHHHHCCCC
Confidence 445555556555 4 346779999999865433333221 23 22 23332 222333 233344458888
Q ss_pred CCcEEEECCCCceecc
Q 003940 204 WPLSVFLSPDLKPLMG 219 (784)
Q Consensus 204 ~P~~vfl~pdg~pi~~ 219 (784)
+|..+ + +|+.|.+
T Consensus 319 VPqVF-I--~Gk~IGG 331 (362)
T 2jad_A 319 VPNIY-I--NGKHIGG 331 (362)
T ss_dssp SCEEE-E--TTEEEES
T ss_pred cCEEE-E--CCEEEEC
Confidence 99754 4 4665543
No 350
>3tdg_A DSBG, putative uncharacterized protein; thioredoxin fold, reductase, oxidoreductase; HET: P6G; 2.10A {Helicobacter pylori}
Probab=71.08 E-value=2.8 Score=43.96 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=25.1
Q ss_pred hcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND 172 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~ 172 (784)
..+|.+++.|+-..|++||++.. ++.+.+++
T Consensus 145 ~~gk~~I~vFtDp~CPYCkkl~~------~l~~~l~~ 175 (273)
T 3tdg_A 145 ANKDKILYIVSDPMCPHCQKELT------KLRDHLKE 175 (273)
T ss_dssp GGTTCEEEEEECTTCHHHHHHHH------THHHHHHH
T ss_pred CCCCeEEEEEECcCChhHHHHHH------HHHHHhhC
Confidence 56889999999999999999986 45555653
No 351
>2yik_A Endoglucanase; hydrolase; 2.10A {Clostridium thermocellum}
Probab=70.97 E-value=49 Score=38.46 Aligned_cols=122 Identities=13% Similarity=-0.004 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHHHh-c--cccCCCeEEEEecCC--------CCC---CCC----------CcchHHHHHHHHHHHHH
Q 003940 579 KEYMEVAESAASFIRRH-L--YDEQTHRLQHSFRNG--------PSK---APG----------FLDDYAFLISGLLDLYE 634 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~-l--~d~~~G~l~~~~~dg--------~~~---~~~----------~leDyA~li~aLL~LYe 634 (784)
+..++.++-..+||++. + .++..|.+++...+| .|. ..+ -.+--+.++.+|...+.
T Consensus 152 ~d~ldeikwg~Dyllkmq~~~~~~~~g~~y~qVgdg~~Dh~~w~~Pe~~~~~R~~y~v~~~~pgsd~a~~~AAAlAaAS~ 231 (611)
T 2yik_A 152 VHAEVILRYFNDYFMRCTFRDASGNVVAFCHQVGDGDIDHAFWGAPENDTMFRRGWFITKEKPGTDIISATAASLAINYM 231 (611)
T ss_dssp HHHHHHHHHHHHHHHHTEEECTTSCEEEEEEEESCHHHHTTCCSCGGGCCSCCCEEEEBTTBCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcccccccCCCCcEEEEeCCCCccccCCCChhhCCCCCcceeecCCCCccHHHHHHHHHHHHHHH
Confidence 78999999999999985 2 144557888876543 110 001 11113455666666666
Q ss_pred HcC--C----HHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChh--HHHHHHHHHHHHHhCC
Q 003940 635 FGS--G----TKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGN--SVSVINLVRLASIVAG 706 (784)
Q Consensus 635 aTg--d----~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~N--sv~a~~L~rL~~lt~~ 706 (784)
+.. | .++|+.|+++++.+.++- |.|...... .-+...|.+ --++-+-..|+..||+
T Consensus 232 vfk~~D~~yA~~~L~~Ak~~~~fA~~~~-----~~y~~~~~~-----------~~~~Y~ss~~~DEl~WAAawLy~ATgd 295 (611)
T 2yik_A 232 NFKDTDPQYAAKSLDYAKALFDFAEKNP-----KGVVQGEDG-----------PKGYYGSSKWQDDYCWAAAWLYLATQN 295 (611)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHHHHSC-----CCCCCGGGT-----------TTTTSCCCCSHHHHHHHHHHHHHHHCC
T ss_pred hccccCHHHHHHHHHHHHHHHHHHHHcC-----CcccCCCcc-----------cCcCCCCCCcccHHHHHHHHHHHHhCC
Confidence 654 4 356888888888887642 222111000 001112211 1245566788999986
Q ss_pred CCchHHHHHHHHH
Q 003940 707 SKSDYYRQNAEHS 719 (784)
Q Consensus 707 ~~~~~y~e~A~~~ 719 (784)
+.|++.+++.
T Consensus 296 ---~~Yl~~a~~~ 305 (611)
T 2yik_A 296 ---EHYLDEAFKY 305 (611)
T ss_dssp ---HHHHHHHHHH
T ss_pred ---HHHHHHHHHH
Confidence 7899998764
No 352
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*
Probab=70.47 E-value=21 Score=40.83 Aligned_cols=93 Identities=19% Similarity=0.242 Sum_probs=55.1
Q ss_pred chHHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-ecCCCCCCCCCc
Q 003940 544 SWNGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-FRNGPSKAPGFL 619 (784)
Q Consensus 544 sWNal~I~---ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~-~~dg~~~~~~~l 619 (784)
.-||++.. .|++.++.+|+... ..+|.+.|.++.+.+.+.|||++.|.++.. ..+|+......
T Consensus 306 DlnA~ly~a~~~la~lA~~lG~~~~------------a~~~~~~A~~lk~ai~~~fWdee~G~y~D~~~~~~~~~~~~~- 372 (535)
T 2jg0_A 306 DLNSLMFKMEKILARASKAAGDNAM------------ANQYETLANARQKGIEKYLWNDQQGWYADYDLKSHKVRNQLT- 372 (535)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHHHSEETTTTEECCEETTTTEECCCCB-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHhCcCCCCCEEEEEeCCCCCEeeeeh-
Confidence 34566644 56677777876310 257999999999999999999887766533 23333211111
Q ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc
Q 003940 620 DDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLD 658 (784)
Q Consensus 620 eDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D 658 (784)
+.+++-|+----++ ++|..+.+.+.+.|+.
T Consensus 373 ------~s~~~PL~~gi~~~---e~a~~v~~~l~~~l~t 402 (535)
T 2jg0_A 373 ------AAALFPLYVNAAAK---DRANKMATATKTHLLQ 402 (535)
T ss_dssp ------GGGGHHHHTTCSCH---HHHHHHHHHHHHHTEE
T ss_pred ------hhhHHHHhcCCCCH---HHHHHHHHHHHHHhcc
Confidence 11222222111122 3677888888777875
No 353
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}
Probab=70.39 E-value=15 Score=43.44 Aligned_cols=111 Identities=7% Similarity=0.076 Sum_probs=70.8
Q ss_pred hhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE--------ecCCCC
Q 003940 542 IVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS--------FRNGPS 613 (784)
Q Consensus 542 itsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~--------~~dg~~ 613 (784)
+.++..+.+.++.+.++.+||... .++.....++..+|+.++. ++ +|.+... +.++..
T Consensus 382 ~~d~~l~wi~~~~~yy~~tGD~~~------------L~e~~p~l~~~ld~~~~~~-d~-~GL~~~~~G~W~~~dW~d~~~ 447 (739)
T 3cih_A 382 IMDYTFYWFLSVYDYYMYSGDRHF------------VNQLYPRMQTMMDYVLGRT-NK-NGMVEGMSGDWVFVDWADGYL 447 (739)
T ss_dssp BHHHHHHHHHHHHHHHHHHCCHHH------------HHHHHHHHHHHHHHHHTTB-CT-TSCBCCCTTCBCCSCCCTTCC
T ss_pred ccchhHHHHHHHHHHHHHhCCHHH------------HHHHHHHHHHHHHHHHHhc-CC-CCCcccCCCCcccCCCccccc
Confidence 345677778899999999998321 2456677788888887754 43 3432211 111100
Q ss_pred CCCC-CcchHHHHHHH---HHHHHHHcCCH----HHHHHHHHHHHHHHHhccccCCCcccc
Q 003940 614 KAPG-FLDDYAFLISG---LLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFN 666 (784)
Q Consensus 614 ~~~~-~leDyA~li~a---LL~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~ 666 (784)
...+ ..+..+++..+ +.++.++.|++ +|.+.|.+|-+.+.++|||++.|.|++
T Consensus 448 ~~~G~~~~~~a~~y~al~~~a~lA~~lG~~~~A~~y~~~A~~lk~a~~~~~wd~~~G~y~~ 508 (739)
T 3cih_A 448 DKKGELSFEQVLFCRSLETMALCADLVGDKDGQQKYEKLASALKAKLEPTFWNNQKQAFVH 508 (739)
T ss_dssp CCSSEEHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHEETTTTEECS
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhccCcccCeeEe
Confidence 0111 23345555444 45666777874 588999999999999999988777664
No 354
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=69.70 E-value=39 Score=40.15 Aligned_cols=115 Identities=12% Similarity=0.097 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC-C---CCCCcchH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS-K---APGFLDDY 622 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~-~---~~~~leDy 622 (784)
..++.++.+.++.+||...=.+- -|....+.....+..++..+|+.+++ ++ +|.+.....|... . .....+-.
T Consensus 429 lw~~~~~~~y~~~tGD~~~L~e~-~p~~~~~~~~v~e~~~~~~~~~~~~~-~~-~GL~~~~~~DW~D~~~~~~g~~v~~~ 505 (807)
T 1v7w_A 429 LWLIPTICKYVMETGETSFFDQM-IPYADGGEASVYEHMKAALDFSAEYV-GQ-TGICKGLRADWNDCLNLGGGESSMVS 505 (807)
T ss_dssp GGHHHHHHHHHHHHCCGGGGGCE-EECTTSCEEEHHHHHHHHHHHHHHSB-CT-TSCBEEETCSSSTTCCCEEEEEHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHhcc-cccccCCcchHHHHHHHHHHHHHhcC-CC-CCCcccCCCCCCCcCCCCCCeehhHH
Confidence 56788999999999983210000 00000000022345888889988765 54 5654432222110 0 11123334
Q ss_pred HHHH---HHHHHHHHHcCCH----HHHHHHHHHHHHHHHhccccCCCccc
Q 003940 623 AFLI---SGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYF 665 (784)
Q Consensus 623 A~li---~aLL~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf 665 (784)
|++. ..+.++.+..|++ +|.+.|++|.+.+.++|||++ |+||
T Consensus 506 a~~y~al~~~a~la~~lG~~~~a~~~~~~A~~lk~~~~~~~w~~~-~~~f 554 (807)
T 1v7w_A 506 FLHFWALQEFIDLAKFLGKDQDVNTYTEMAANVREACETHLWDDE-GGWY 554 (807)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSEETT-TTEE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCCC-CCee
Confidence 5444 4445666777874 588999999999999999976 4444
No 355
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=69.05 E-value=9 Score=38.30 Aligned_cols=86 Identities=12% Similarity=0.085 Sum_probs=52.4
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCC
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDL 214 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg 214 (784)
+...+++.|.|...-|..++...- +++....|.|..-.+..+++.+.| |+.++|+.|+++++|
T Consensus 154 ~~~~~~~al~f~~~~~~~~~~~~~---------d~~~~~~i~v~~~~~~~~~l~~~f--------~v~~~Pslvl~~~~g 216 (244)
T 3q6o_A 154 RNNEEYLALIFEXGGSYLAREVAL---------DLSQHKGVAVRRVLNTEANVVRKF--------GVTDFPSCYLLFRNG 216 (244)
T ss_dssp HCCCSEEEEEEECTTCCHHHHHHH---------HTTTCTTEEEEEEETTCHHHHHHH--------TCCCSSEEEEEETTS
T ss_pred cCCCceEEEEEEECCcchHHHHHH---------HhccCCceEEEEEeCchHHHHHHc--------CCCCCCeEEEEeCCC
Confidence 467788888888776655444322 334334455554444456666665 899999999999999
Q ss_pred ceeccccccCCCCCCCcchHHHHHHHHH
Q 003940 215 KPLMGGTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 215 ~pi~~~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
++..--. ....+..|-..|+++.
T Consensus 217 ~~~~~~~-----~~~~r~~~~~~l~~~~ 239 (244)
T 3q6o_A 217 SVSRVPV-----LMESRSFYTAYLQRLS 239 (244)
T ss_dssp CEEECCC-----SSSSHHHHHHHHHTC-
T ss_pred CeEeecc-----ccccHHHHHHHHHhCC
Confidence 9875421 1223344555555543
No 356
>3c7m_A Thiol:disulfide interchange protein DSBA-like; redox protein, periplasm, redox-active center, oxidoreductase; HET: PGE; 1.55A {Escherichia coli} PDB: 3l9u_A
Probab=66.79 E-value=5.4 Score=38.07 Aligned_cols=43 Identities=12% Similarity=0.257 Sum_probs=29.3
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc--ccEEEEEcC
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDR 181 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~--~FV~VkvD~ 181 (784)
..++++|.|+..+|+||..++...+ +++.+.... .|+++.++.
T Consensus 16 ~~~~~~ief~d~~CP~C~~~~~~l~--~~l~~~~~~~v~~~~~~l~~ 60 (195)
T 3c7m_A 16 NADKTLIKVFSYACPFCYKYDKAVT--GPVSEKVKDIVAFTPFHLET 60 (195)
T ss_dssp SCTTEEEEEECTTCHHHHHHHHHTH--HHHHHHTTTTCEEEEEECTT
T ss_pred CCCcEEEEEEeCcCcchhhCcHHHH--HHHHHhCCCceEEEEEecCc
Confidence 3577888999999999999987432 455554432 355555554
No 357
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=66.46 E-value=75 Score=39.18 Aligned_cols=127 Identities=13% Similarity=0.046 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEe-cCCCCCCC-CCcchHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHhcccc
Q 003940 583 EVAESAASFIRRHLYDEQTHRLQHSF-RNGPSKAP-GFLDDYAFLISGLLDLYEFGSGTKWLV-WAIELQNTQDELFLDR 659 (784)
Q Consensus 583 e~A~~~a~~l~~~l~d~~~G~l~~~~-~dg~~~~~-~~leDyA~li~aLL~LYeaTgd~~yL~-~A~~L~~~~~~~F~D~ 659 (784)
+.|++..+||.+.... .+|.+.+.+ .+|++... ...+-++..+.++..+++ + |..... ..+.+++.+.++ +..
T Consensus 348 e~A~~~l~~L~~~Q~~-~~G~~~~~y~i~G~~~w~~~Q~D~~g~~l~~~~~~~~-~-d~~~w~~~v~~al~~i~~~-g~~ 423 (1020)
T 1ulv_A 348 EAAARGVEWLFTYQQQ-PDGHFPQTSRVDGTIGQNGIQLDETAFPILLANQIGR-T-DAGFYRNELKPAADYLVAA-GPK 423 (1020)
T ss_dssp HHHHHHHHHHHHHTCC-TTSCCCSCBCTTSCBCCCCCBTHHHHHHHHHHHHHTC-C-CHHHHHHTHHHHHHHHHHH-CSC
T ss_pred HHHHHHHHHHHHHhcC-CCCCeeeEEecCCCcCCCCccCccchHHHHHHHHHHh-c-CHHHHHHHHHHHHHHHHHh-CCC
Confidence 5678888888776523 357777776 46665443 366888999888888765 4 444444 677777777665 321
Q ss_pred CCCcccccCCCCCccccccccCCCCCCCChhHHHHHHH---HHHHHHhCCCC-chHHHHHHHHHHHHHHHHH
Q 003940 660 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINL---VRLASIVAGSK-SDYYRQNAEHSLAVFETRL 727 (784)
Q Consensus 660 ~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L---~rL~~lt~~~~-~~~y~e~A~~~l~~~~~~l 727 (784)
..-+. ++...+..+..+++...+| .+|++..|+.. .+.|++.|+++-+.+....
T Consensus 424 ~~~~~--------------WEe~~g~~~~t~~~~~~AL~~aa~lA~~~G~~~~a~~w~~~Ad~i~~~i~~~~ 481 (1020)
T 1ulv_A 424 TPQER--------------WEETGGYSTSTLASQIAALAAAADIAGKNGDAGSAAVYRATADEWQRSTEKWM 481 (1020)
T ss_dssp BSBCT--------------TSSCCBEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CChhh--------------hcccCCcCHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHHHHhC
Confidence 11011 1211233345555444444 46666656421 1356667766666665443
No 358
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=66.26 E-value=7.3 Score=35.90 Aligned_cols=45 Identities=11% Similarity=-0.065 Sum_probs=28.6
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcc-cEEEEEcCCCCccHHHH
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKV 190 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~-FV~VkvD~ee~pdi~~~ 190 (784)
++.+++++|++|++.++ -..+..+|+.+ .-...+|++..|+..+.
T Consensus 2 V~vYtt~~c~~c~~kk~----c~~aK~lL~~kgV~feEidI~~d~~~r~e 47 (121)
T 1u6t_A 2 IRVYIASSSGSTAIKKK----QQDVLGFLEANKIGFEEKDIAANEENRKW 47 (121)
T ss_dssp EEEEECTTCSCHHHHHH----HHHHHHHHHHTTCCEEEEECTTCHHHHHH
T ss_pred EEEEecCCCCCccchHH----HHHHHHHHHHCCCceEEEECCCCHHHHHH
Confidence 44567999999987664 34677788764 33334566655655443
No 359
>1v5d_A Chitosanase; chitosan degradation, hydrolase, glycosil hydrolase, family 8; HET: PIN; 1.50A {Bacillus SP} SCOP: a.102.1.2 PDB: 1v5c_A*
Probab=65.83 E-value=33 Score=37.51 Aligned_cols=129 Identities=9% Similarity=-0.009 Sum_probs=78.9
Q ss_pred HHHHHHHHHhccccCCCeEEEEec-CCCC--CCCCCcchHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHhcccc
Q 003940 586 ESAASFIRRHLYDEQTHRLQHSFR-NGPS--KAPGFLDDYAFLISGLLDLYEFGSGT---KWLVWAIELQNTQDELFLDR 659 (784)
Q Consensus 586 ~~~a~~l~~~l~d~~~G~l~~~~~-dg~~--~~~~~leDyA~li~aLL~LYeaTgd~---~yL~~A~~L~~~~~~~F~D~ 659 (784)
.++..|.++++....+|.+-|.+. +|+. +...=+++=-+.+.||+.+.+..|+. .|++.|++|++.+..+-...
T Consensus 98 D~l~~wt~~~l~~~~~~L~aW~~~~~g~~~~d~n~AtDgDl~IA~ALl~A~~~Wg~~g~~~Y~~~A~~il~~i~~~~~~~ 177 (386)
T 1v5d_A 98 DGLFKTARTFKSSQNPNLMGWVVADSKKAQGHFDSATDGDLDIAYSLLLAHKQWGSNGTVNYLKEAQDMITKGIKASNVT 177 (386)
T ss_dssp HHHHHHHHHTBCSSCTTSBCSEECSSGGGTTTSCCCHHHHHHHHHHHHHHHHHHCSSSSSCHHHHHHHHHHHTHHHHHBC
T ss_pred HHHHHHHHHHhccCCCCCeEEEECCCCCcCCCCCCCCHHHHHHHHHHHHHHHHcCCCchHhHHHHHHHHHHHHHHhcccC
Confidence 456777777876445666666653 2221 12233455568999999999999998 89999999998887775543
Q ss_pred CCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Q 003940 660 EGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFETRL 727 (784)
Q Consensus 660 ~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~~l 727 (784)
.++ ... ..+. .+...+...|| =.+...|-.+++++++ ..|.+.++..++.+....
T Consensus 178 ~~~-~l~-~g~~------~~~~~~~~npS--Y~~p~~l~~f~~~~~~---~~W~~v~~~~~~~l~~~~ 232 (386)
T 1v5d_A 178 NNN-QLN-LGDW------DSKSSLDTRPS--DWMMSHLRAFYEFTGD---KTWLTVINNLYDVYTQFS 232 (386)
T ss_dssp TTS-SBC-SSTT------SCTTCCCBCGG--GCCHHHHHHHHHHHCC---THHHHHHHHHHHHHHHHH
T ss_pred CCC-eee-eccc------CCCCCCeechh--hccHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHH
Confidence 322 111 1110 00111111122 1344567778888875 578888887777765543
No 360
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=65.13 E-value=3.5 Score=40.35 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=31.1
Q ss_pred CCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhc--ccEEEEEcC
Q 003940 138 DVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLND--WFVSIKVDR 181 (784)
Q Consensus 138 ~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~--~FV~VkvD~ 181 (784)
+||.++.|...+|+.|+.++...-.-+++.+.+.+ .|+.+.++.
T Consensus 21 ~~~~vvef~d~~Cp~C~~~~~~l~~~~~l~~~~~~~v~~~~~~~~~ 66 (191)
T 3l9s_A 21 GEPQVLEFFSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEF 66 (191)
T ss_dssp SSSCEEEEECTTCHHHHHHHHTSCHHHHHHHHSCTTCCEEEEECSS
T ss_pred CCCeEEEEECCCChhHHHhChhccchHHHHHhCCCCcEEEEEeccc
Confidence 48899999999999999998642113577776643 455555554
No 361
>1v5d_A Chitosanase; chitosan degradation, hydrolase, glycosil hydrolase, family 8; HET: PIN; 1.50A {Bacillus SP} SCOP: a.102.1.2 PDB: 1v5c_A*
Probab=61.46 E-value=11 Score=41.26 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li 626 (784)
-.+++||..|++.-++.. ...|.+.|+++++.|.++...+.++.+. ..+......-++..-=++.
T Consensus 138 l~IA~ALl~A~~~Wg~~g-------------~~~Y~~~A~~il~~i~~~~~~~~~~~l~--~g~~~~~~~~~~npSY~~p 202 (386)
T 1v5d_A 138 LDIAYSLLLAHKQWGSNG-------------TVNYLKEAQDMITKGIKASNVTNNNQLN--LGDWDSKSSLDTRPSDWMM 202 (386)
T ss_dssp HHHHHHHHHHHHHHCSSS-------------SSCHHHHHHHHHHHTHHHHHBCTTSSBC--SSTTSCTTCCCBCGGGCCH
T ss_pred HHHHHHHHHHHHHcCCCc-------------hHhHHHHHHHHHHHHHHhcccCCCCeee--ecccCCCCCCeechhhccH
Confidence 478899999999988710 0279999999999998876654444332 1111110111111112334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 003940 627 SGLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (784)
Q Consensus 627 ~aLL~LYeaTgd~~yL~~A~~L~~~~~~~ 655 (784)
.+|-.+|+++++..|.+.+....+.+.+.
T Consensus 203 ~~l~~f~~~~~~~~W~~v~~~~~~~l~~~ 231 (386)
T 1v5d_A 203 SHLRAFYEFTGDKTWLTVINNLYDVYTQF 231 (386)
T ss_dssp HHHHHHHHHHCCTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 56667788899999999888877776543
No 362
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=59.96 E-value=30 Score=37.62 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=35.2
Q ss_pred HHHHHH---HHHHHHHHcCC--HHHHHHHHHHHHHHHHhccccCCCcccccC
Q 003940 622 YAFLIS---GLLDLYEFGSG--TKWLVWAIELQNTQDELFLDREGGGYFNTT 668 (784)
Q Consensus 622 yA~li~---aLL~LYeaTgd--~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (784)
.|++.. .+.++++..|+ .+|.+.|+++.+.+.+ |||++.|.||+..
T Consensus 238 na~~~~~~~~la~la~~lg~~a~~~~~~a~~~~~ai~~-~Wd~~~g~~~d~~ 288 (420)
T 2z07_A 238 NAILQRANRDLYALAVLLQEDPYEIEEWIVRGEVGLEA-LWDREAGFYFSWD 288 (420)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-TEETTTTEECCEE
T ss_pred HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH-hhCcccCeeEeee
Confidence 455444 44556666775 6899999999999999 9999888888644
No 363
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=58.40 E-value=67 Score=38.57 Aligned_cols=113 Identities=12% Similarity=-0.054 Sum_probs=65.9
Q ss_pred CCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCh-----HHHHHHHHHHHHHHHHhccccCCCeEEEE--
Q 003940 535 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDR-----KEYMEVAESAASFIRRHLYDEQTHRLQHS-- 607 (784)
Q Consensus 535 P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~-----~~yle~A~~~a~~l~~~l~d~~~G~l~~~-- 607 (784)
++.|+- ...|.++.+..+.+||.. |=+...+... ....+..++..+++.+++ ++ +|.....
T Consensus 412 ~~~D~~------lW~i~av~~Y~~~TGD~~----~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~-g~-~GL~~~g~~ 479 (811)
T 3qde_A 412 NFNDDP------LWLILATAAYIKETGDYS----ILKEQVPFNNDPSKADTMFEHLTRSFYHVVNNL-GP-HGLPLIGRA 479 (811)
T ss_dssp CBTTHH------HHHHHHHHHHHHHHCCGG----GGGSEEEETTEEEEEEEHHHHHHHHHHHHHTCB-CT-TSSBBCBTC
T ss_pred Ccccch------hHHHHHHHHHHHHHCCHH----HHHhhhhhhcCCcccccHHHHHHHHHHHHHhcC-CC-CCCcccccC
Confidence 466775 668899999999999832 1000000000 124567778888888765 43 4433221
Q ss_pred -ecCCCCC------C--------------CCCcchHH---HHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHhcccc
Q 003940 608 -FRNGPSK------A--------------PGFLDDYA---FLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDR 659 (784)
Q Consensus 608 -~~dg~~~------~--------------~~~leDyA---~li~aLL~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~ 659 (784)
|.|+-.. + ..-.+-.+ .++..+.++.+..|++ .|.+.|++|.+.+.++|||.
T Consensus 480 DWnD~ln~~~~~~~vg~~~~~vtp~~~~~gesv~~~al~y~AL~~~a~lA~~lGd~~~A~~~~~~A~~lk~a~~~~~Wdg 559 (811)
T 3qde_A 480 DWNDCLNLNCFSTVPDESFQTTTSKDGKVAESVMIAGMFVFIGKDYVKLCEYMGLEEEARKAQQHIDAMKEAILKYGYDG 559 (811)
T ss_dssp SSSTTCCSSCCCCCTTSCTTTSCCCCCSSCEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSBCS
T ss_pred CchhhccccccccccCccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 3333211 0 00112223 3455566677778884 58899999999999999973
No 364
>1kwf_A Endoglucanase A; hydrolase, inverting glycosidase, atomic resolution, protein-carbohydrate interactions, reaction mechanism, cellulase; HET: BGC; 0.94A {Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1is9_A 1cem_A
Probab=57.41 E-value=1.2e+02 Score=32.72 Aligned_cols=124 Identities=13% Similarity=0.117 Sum_probs=75.1
Q ss_pred HHHHHHHHHhccccCCCeEEEEec-CCCC-C----CCCCcchHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHhc
Q 003940 586 ESAASFIRRHLYDEQTHRLQHSFR-NGPS-K----APGFLDDYAFLISGLLDLYEFGSGT---KWLVWAIELQNTQDELF 656 (784)
Q Consensus 586 ~~~a~~l~~~l~d~~~G~l~~~~~-dg~~-~----~~~~leDyA~li~aLL~LYeaTgd~---~yL~~A~~L~~~~~~~F 656 (784)
.++..|.+.++.+ +|.+-|.+. +|+. . ...=+++=-..+.||+.+.+..|+. .|++.|++|++.+.++-
T Consensus 82 d~l~~wt~~~~~~--~~l~aW~~~~~g~~~~~~d~~~~AtDgDl~IA~ALl~A~~~W~~~g~~~Y~~~A~~i~~~i~~~~ 159 (363)
T 1kwf_A 82 DDLYRYVKSHFNG--NGLMHWHIDANNNVTSHDGGDGAATDADEDIALALIFADKLWGSSGAINYGQEARTLINNLYNHC 159 (363)
T ss_dssp HHHHHHHHTTBCT--TSSBCSEECTTSCBCTTTTTTSCBHHHHHHHHHHHHHHHHHHCSSSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CCCeEEEECCCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHh
Confidence 4566777778743 455555553 2321 1 1123455568999999999999988 89999999999999886
Q ss_pred cccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003940 657 LDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (784)
Q Consensus 657 ~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~ 725 (784)
+.+ |.+.-.+.+. ....+...||= ++...+-.++.++++ ..|.+.++..++.+..
T Consensus 160 ~~~--~~~~l~pg~~-------~~~~~~~npSY--~~p~~~~~fa~~~~~---~~W~~~~~~~~~~l~~ 214 (363)
T 1kwf_A 160 VEH--GSYVLKPGDR-------WGGSSVTNPSY--FAPAWYKVYAQYTGD---TRWNQVADKCYQIVEE 214 (363)
T ss_dssp BCT--TTCCBCSBSS-------SCBTTBBCGGG--CCHHHHHHHHHHHCC---THHHHHHHHHHHHHHH
T ss_pred ccC--CCeEEecccc-------CCCCCEecchh--cCHHHHHHHHHccCC---chHHHHHHHHHHHHHH
Confidence 652 3221222110 00001112322 344556667777764 5688888877776544
No 365
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=57.16 E-value=2.6e+02 Score=33.96 Aligned_cols=135 Identities=13% Similarity=0.152 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc---c
Q 003940 583 EVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY-AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL---D 658 (784)
Q Consensus 583 e~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDy-A~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~---D 658 (784)
+.+++..+.+.+... .+|.+.+...++ ......|+ .+++.++.++|+.|||..+|+..-..++...+.+. |
T Consensus 595 ~lar~~L~~l~~~Q~--~dG~ip~~~p~~---~~~~~~~~~~~~i~~~~~yy~~tGD~~~L~e~yp~lk~~l~~~~~~~d 669 (956)
T 2okx_A 595 EIVERCLNLVPGSAD--ETPLYLDQVPSA---WSSVIPNWTFFWILACREYAAHTGNEAFAARIWPAVKHTLTHYLEHID 669 (956)
T ss_dssp HHHHHHHHHGGGGTT--TCTTCCSBSSCS---SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHhhcc--cCCCcCcccccc---ccCCCcChHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345555555543332 245554433221 11233455 46788999999999999998765555544444332 3
Q ss_pred cCCCcccccCCCCCccccccccC---CCCCCCChhHHH---HHHHHHHHHHhCCCC-chHHHHHHHHHHHHHHHHH
Q 003940 659 REGGGYFNTTGEDPSVLLRVKED---HDGAEPSGNSVS---VINLVRLASIVAGSK-SDYYRQNAEHSLAVFETRL 727 (784)
Q Consensus 659 ~~~Ggyf~t~~~~~~l~~R~k~~---~D~a~PS~Nsv~---a~~L~rL~~lt~~~~-~~~y~e~A~~~l~~~~~~l 727 (784)
+ + |+..... ... ..+.+. .++.....|+.+ +..+.+|+++.|+++ .+.|++.|+++.+.|....
T Consensus 670 ~-~-GLl~~~~--~~~-~DW~d~~~~~~G~~~~~~a~~~~al~~~a~lA~~LG~~~~a~~y~~~A~~lk~ai~~~~ 740 (956)
T 2okx_A 670 D-S-GLLNMAG--WNL-LDWAPIDQPNEGIVTHQNLFLVKALRDSRALAAAAGATEEADAFAARADLLAETINAVL 740 (956)
T ss_dssp T-T-SSBCCSS--CCC-CCSSSCCCCSSSEEHHHHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHHHHS
T ss_pred C-C-CCEEeCC--CCc-cCccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh
Confidence 2 2 3332210 000 000010 011111234443 334557778887642 2569999999888887654
No 366
>3a0o_A Oligo alginate lyase; alpha/alpha ballel+anti-parallel beta sheet; 2.11A {Agrobacterium tumefaciens} PDB: 3afl_A*
Probab=54.90 E-value=2e+02 Score=33.79 Aligned_cols=27 Identities=11% Similarity=-0.298 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHH
Q 003940 383 GQLANVYLDAFSLTKDVFYSYICRDIL 409 (784)
Q Consensus 383 A~Ll~~ya~Ay~~t~d~~y~~~A~~t~ 409 (784)
...+..++-||++|+|..|.+.|.+.+
T Consensus 209 ~~~l~~la~ay~ltgd~kya~~a~~~L 235 (776)
T 3a0o_A 209 IYAIRHLAIAGRVLGRDDLLDASRKWL 235 (776)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 678888999999999999998777644
No 367
>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19
Probab=54.14 E-value=26 Score=36.63 Aligned_cols=18 Identities=11% Similarity=0.215 Sum_probs=14.5
Q ss_pred EEEEEcccCChhhhhhhh
Q 003940 141 IFLSIGYSTCHWCHVMEV 158 (784)
Q Consensus 141 I~l~~~~~wC~wC~~Me~ 158 (784)
.+..|+..+|++|...++
T Consensus 45 ~VelyTs~gCp~C~~Ak~ 62 (270)
T 2axo_A 45 VVELFTSQGCASCPPADE 62 (270)
T ss_dssp EEEEEECTTCTTCHHHHH
T ss_pred EEEEEeCCCCCChHHHHH
Confidence 556688999999998654
No 368
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ...
Probab=52.93 E-value=27 Score=38.85 Aligned_cols=118 Identities=16% Similarity=0.127 Sum_probs=63.0
Q ss_pred HHHHHHHHhhccccCCCCCCCCCCCChhHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCCeEEEEe
Q 003940 286 RLCAEQLSKSYDSRFGGFGSAPKFPRPVEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYS 365 (784)
Q Consensus 286 ~~~~~~l~~~~D~~~GGfg~aPKFP~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYs 365 (784)
++.++-+.+......|||+...+- .+..+-+.+.....- |.. .+...++-+...|..|.. -+|||..|
T Consensus 76 ~~hi~~l~~~lq~~~gg~~a~D~~-r~~l~y~~l~aL~lL---g~~-~~~~~~~r~v~~l~s~Q~------~dGGf~g~- 143 (437)
T 2h6f_B 76 EKHFHYLKRGLRQLTDAYECLDAS-RPWLCYWILHSLELL---DEP-IPQIVATDVCQFLELCQS------PEGGFGGG- 143 (437)
T ss_dssp HHHHHHHHHHTTEECGGGGGGTTC-HHHHHHHHHHHHHHT---TCC-CCHHHHHHHHHHHHHHBC------TTSSBBSS-
T ss_pred HHHHHHHHHcCCCCCCCcccccCC-CccHHHHHHHHHHHh---CCC-CCHHHHHHHHHHHHHhCC------CCCCcCCc-
Confidence 455666666655678888875543 233333222222221 111 123344555555666633 46999874
Q ss_pred cCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChH-HHH-HHHHHHHHHHHhccCCCCceeecc
Q 003940 366 VDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVF-YSY-ICRDILDYLRRDMIGPGGEIFSAE 427 (784)
Q Consensus 366 vD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~-y~~-~A~~t~~fl~~~m~~~~Ggfysa~ 427 (784)
.|..+|-. .-...+.++ .+.+... +.+ ..+++++||.+ ++.++|||+...
T Consensus 144 ---~~~~~~i~----~T~~Al~aL----~~lg~~~~~~~i~i~kav~~L~s-~Q~~DGsf~~~~ 195 (437)
T 2h6f_B 144 ---PGQYPHLA----PTYAAVNAL----CIIGTEEAYDIINREKLLQYLYS-LKQPDGSFLMHV 195 (437)
T ss_dssp ---TTCCBCHH----HHHHHHHHH----HHHCCHHHHTTSCHHHHHHHHHT-TBCTTSCBBSST
T ss_pred ---cCCCcchh----HHHHHHHHH----HHhCCcccccchHHHHHHHHHHH-hCCCCCCeeecC
Confidence 47777643 222222222 2233321 111 25789999987 788999998643
No 369
>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10
Probab=51.92 E-value=18 Score=35.23 Aligned_cols=44 Identities=14% Similarity=0.055 Sum_probs=27.3
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCCHHHHHH---Hhcc-cEEEEEcC
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFEDEGVAKL---LNDW-FVSIKVDR 181 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d~eVa~~---ln~~-FV~VkvD~ 181 (784)
.+|+|+|.|+ .+||+.|...|-..|++ ...++ .+-. .+.|.+|-
T Consensus 42 ~gk~vVL~fyP~~fTp~Ct~~e~~~f~~-~~~~f~~~~g~~~V~gvS~D~ 90 (182)
T 1xiy_A 42 NNKKILLISLPGAFTPTCSTKMIPGYEE-EYDYFIKENNFDDIYCITNND 90 (182)
T ss_dssp TTCEEEEEECSCTTCHHHHHTHHHHHHH-THHHHHTTSCCSEEEEEESSC
T ss_pred CCCcEEEEEeCCCCCCCCCHHHHHHHHH-HHHHHHHhCCCcEEEEEeCCC
Confidence 4788888765 79999999555556654 33344 2222 55566653
No 370
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=50.85 E-value=20 Score=38.84 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=75.1
Q ss_pred HHHHHHHHHhccccCCCeEEEEecCC-CCCCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCC-Cc
Q 003940 586 ESAASFIRRHLYDEQTHRLQHSFRNG-PSKAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREG-GG 663 (784)
Q Consensus 586 ~~~a~~l~~~l~d~~~G~l~~~~~dg-~~~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~-Gg 663 (784)
.++.+|.+++|. ++|.+.|.+..+ +....+ ++|=-+.|.||+.+.+..+++.|.+.|.+|.+.+..+...... ..
T Consensus 82 d~l~~~t~~~l~--~~~L~sWr~~~~~~~~nNA-tdgDl~IA~ALl~A~~~W~~~~Y~~~A~~I~~~i~~~~~~~g~l~~ 158 (350)
T 3ren_A 82 DEHFDIVKEMRL--KNGLISWRKEGDENSPSSA-TIDELRIIKALLLANNRWNSFYYKFYAINIANSLLKHAEENETLVD 158 (350)
T ss_dssp HHHHHHHHTTBC--TTSSBCSEEETTEECSCEE-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEETTEECS
T ss_pred HHHHHHHHHHhc--cCCceEEEECCCCCCCCCC-cHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHccccCcccC
Confidence 567888899998 467777766433 222334 3445688999999999999999999999999999998654210 12
Q ss_pred ccccCCCCCccccccccCCCCCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHH
Q 003940 664 YFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAVFET 725 (784)
Q Consensus 664 yf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~~~~ 725 (784)
||+.... ..+++ || =++..+|-.|+.+. ..|.+.+++.++.+..
T Consensus 159 ~~d~~~~--~~~ln---------~S--Y~~~~a~~~f~~~~-----~~W~~l~~~g~~lL~~ 202 (350)
T 3ren_A 159 YIDNYGK--GNTTT---------LC--YLDLPTMKLLSQVD-----KKWEGIYEKSNSIIEN 202 (350)
T ss_dssp EECSSCB--CSEEE---------GG--GCCHHHHHHHHHHC-----THHHHHHHHHHHHHHT
T ss_pred CCCccCC--CCEee---------hH--hcCHHHHHHHHHhc-----chHHHHHHHHHHHHHh
Confidence 3322111 11111 11 13455666677663 3567766666666554
No 371
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=50.85 E-value=92 Score=37.43 Aligned_cols=113 Identities=13% Similarity=-0.086 Sum_probs=66.8
Q ss_pred CCCCchhhhchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCCh-----HHHHHHHHHHHHHHHHhccccCCCeEEEE--
Q 003940 535 PHLDDKVIVSWNGLVISSFARASKILKSEAESAMFNFPVVGSDR-----KEYMEVAESAASFIRRHLYDEQTHRLQHS-- 607 (784)
Q Consensus 535 P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~-----~~yle~A~~~a~~l~~~l~d~~~G~l~~~-- 607 (784)
++.|+- ...+.++.+..+.+||.. |=+...++.. ....+..++..+++.+++ ++ +|...-.
T Consensus 419 ~~~D~~------lWl~~av~~Yi~~TGD~~----~L~e~~p~~~~~~~~~tl~eh~~ra~~~~~~~~-g~-~GLp~~g~g 486 (822)
T 3rrs_A 419 GFNDDP------LWLIAGTAAYIKETGDFS----ILDEPVPFDNEPGSEVPLFEHLTRSFEFTVTHR-GP-HGLPLIGRA 486 (822)
T ss_dssp CBTTHH------HHHHHHHHHHHHHHCCGG----GGGSEECSTTCTTCCEEHHHHHHHHHHHHHHSB-CT-TSSBBCBTC
T ss_pred cccchH------hHHHHHHHHHHHHHCCHH----HHHhhhhhhccccccccHHHHHHHHHHHHHhcC-CC-CCCcccCCC
Confidence 466775 668899999999999832 1110000000 124567888899988766 32 3432211
Q ss_pred -ecCCCCC------C--------C---CC---cchHH---HHHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHhcccc
Q 003940 608 -FRNGPSK------A--------P---GF---LDDYA---FLISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDR 659 (784)
Q Consensus 608 -~~dg~~~------~--------~---~~---leDyA---~li~aLL~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~ 659 (784)
|.|+-.. + + +. .+-.+ .++..+.++.+..|++ +|.+.|++|.+.+.++|||.
T Consensus 487 DWnD~ln~~~~~~~vg~~~~~~~p~~~~~Gesv~~~al~y~AL~~~a~lA~~~G~~~~A~~~~~~A~~lk~a~~~~~Wdg 566 (822)
T 3rrs_A 487 DWNDCLNLNCFSTTPGESFQTTENQAGGVAESTFIAAQFVLYGEQYAELAARRGLADVADRARGHVAEMRDALLTDGWDG 566 (822)
T ss_dssp SSSTTCCTTCCCCSTTCCTTTCCSSCCCCCEEHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTBCS
T ss_pred cchhhcccccccccccccccccccccCCccccHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHhccCc
Confidence 3332211 0 0 11 12223 3455566777778885 58899999999999999973
No 372
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=49.34 E-value=36 Score=36.87 Aligned_cols=87 Identities=14% Similarity=0.037 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li 626 (784)
-++++||.+|++..++ ++|.+.|.+++.-|.++... .|.+.. +.+.... ..++.---+..
T Consensus 117 l~IA~ALl~A~~~W~~----------------~~Y~~~A~~I~~~i~~~~~~--~g~l~~-~~d~~~~-~~~ln~SY~~~ 176 (350)
T 3ren_A 117 LRIIKALLLANNRWNS----------------FYYKFYAINIANSLLKHAEE--NETLVD-YIDNYGK-GNTTTLCYLDL 176 (350)
T ss_dssp HHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHHHHEE--TTEECS-EECSSCB-CSEEEGGGCCH
T ss_pred HHHHHHHHHHHHHcCc----------------HHHHHHHHHHHHHHHHHccc--cCcccC-CCCccCC-CCEeehHhcCH
Confidence 5789999999999987 78999999999999998765 354432 2222111 22222222345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 003940 627 SGLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (784)
Q Consensus 627 ~aLL~LYeaTgd~~yL~~A~~L~~~~~~~ 655 (784)
.++-.+++. +..|.+.+..-.+.+.+.
T Consensus 177 ~a~~~f~~~--~~~W~~l~~~g~~lL~~g 203 (350)
T 3ren_A 177 PTMKLLSQV--DKKWEGIYEKSNSIIENG 203 (350)
T ss_dssp HHHHHHHHH--CTHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHh--cchHHHHHHHHHHHHHhC
Confidence 566667776 477888888888887773
No 373
>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A
Probab=43.59 E-value=11 Score=35.24 Aligned_cols=61 Identities=8% Similarity=0.105 Sum_probs=36.0
Q ss_pred EEEcccCChhhhhhhhcccCCHHHHHHHhcc-cEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCcee
Q 003940 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKPL 217 (784)
Q Consensus 143 l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~-FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi 217 (784)
..++.++|.+|++-. ++|+++ .-+..+|..+.|.-........+.+ |+|..-+++..|...
T Consensus 5 tiY~~p~C~~crkak----------~~L~~~gi~~~~idi~~~~~~~~eL~~~~~~~----g~p~~~l~n~~~~~y 66 (141)
T 1s3c_A 5 TIYHNPASGTSRNTL----------EMIRNSGTEPTIILYLENPPSRDELVKLIADM----GISVRALLRKNVEPY 66 (141)
T ss_dssp EEECCTTCHHHHHHH----------HHHHHTTCCCEEECTTTSCCCHHHHHHHHHHH----TSCHHHHBCSSSHHH
T ss_pred EEEECCCChHHHHHH----------HHHHHcCCCEEEEECCCCCccHHHHHHHhccc----CCCHHHhccCCchhH
Confidence 357899999999754 455553 2223456655444333333333333 889777777776543
No 374
>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} SCOP: a.102.1.5 b.1.18.2 b.1.9.3 b.30.5.5 PDB: 1ug9_A*
Probab=43.18 E-value=3e+02 Score=33.94 Aligned_cols=34 Identities=9% Similarity=0.102 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhccccC-----CCeEEEEecCCC
Q 003940 579 KEYMEVAESAASFIRRHLYDEQ-----THRLQHSFRNGP 612 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~-----~G~l~~~~~dg~ 612 (784)
.+|.+.|.++.+.|.+++|+++ .|.|.+...+|.
T Consensus 464 ~~w~~~Ad~i~~~i~~~~w~~~g~~~~~g~f~r~~~dg~ 502 (1020)
T 1ulv_A 464 AVYRATADEWQRSTEKWMFTTNGPVGDGKYYLRISATGN 502 (1020)
T ss_dssp HHHHHHHHHHHHTHHHHHEESSCSSTTSCEECSEESSSC
T ss_pred HHHHHHHHHHHHHHHHhCCCCcccccccCeeEEEecCCC
Confidence 5789999999999999999976 455655554443
No 375
>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A
Probab=43.11 E-value=16 Score=33.55 Aligned_cols=16 Identities=13% Similarity=0.270 Sum_probs=12.5
Q ss_pred EEEEcccCChhhhhhh
Q 003940 142 FLSIGYSTCHWCHVME 157 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me 157 (784)
+..++.++|++|++..
T Consensus 3 i~lY~~~~C~~C~ka~ 18 (132)
T 1z3e_A 3 VTLYTSPSCTSCRKAR 18 (132)
T ss_dssp EEEEECTTCHHHHHHH
T ss_pred EEEEeCCCChHHHHHH
Confidence 3457899999999754
No 376
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=42.30 E-value=1.8e+02 Score=35.01 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEec--CCCC--CC-CCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 003940 583 EVAESAASFIRRHLYDEQTHRLQHSFR--NGPS--KA-PGFLDDYAFLISGLLDLYEFGSGTKWLV 643 (784)
Q Consensus 583 e~A~~~a~~l~~~l~d~~~G~l~~~~~--dg~~--~~-~~~leDyA~li~aLL~LYeaTgd~~yL~ 643 (784)
+.|++...++..+... +|...|.+. .+.. .+ ..+.||..+++.++.++++.|||..+|+
T Consensus 382 e~ar~~il~~~~~Q~~--dG~v~h~~~p~~~~g~~~~~~~~~D~~lWl~~av~~Yi~~TGD~~~L~ 445 (822)
T 3rrs_A 382 ERARERIIDIASTQFA--DGSAYHQYQPLTKRGNNDIGSGFNDDPLWLIAGTAAYIKETGDFSILD 445 (822)
T ss_dssp HHHHHHHHHHHTTCCT--TSCCCSEEETTTTEECTTTCSCBTTHHHHHHHHHHHHHHHHCCGGGGG
T ss_pred HHHHHHHHHHHHhhcc--cCcccceecCcCCCCccCCCCcccchHhHHHHHHHHHHHHHCCHHHHH
Confidence 4566666666655543 577777764 3221 11 4578888999999999999999999985
No 377
>2l4c_A Endoplasmic reticulum resident protein 27; ERP27, PDI, B domain, peptide binding; NMR {Homo sapiens}
Probab=42.14 E-value=59 Score=29.43 Aligned_cols=66 Identities=6% Similarity=-0.209 Sum_probs=47.4
Q ss_pred HHHHHHHhhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcE
Q 003940 128 EEAFAEARKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLS 207 (784)
Q Consensus 128 ~eal~~Ak~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~ 207 (784)
.+.++...+.+++++|-|..+||..|.. .|. ++|+.+ +++....++- +++.+.| +.. .|+.
T Consensus 29 ~~e~e~fi~~~~v~VVGfF~~~~~~~~~----~F~--~~A~~~-~d~~F~~t~~---~~v~~~~--------~v~-~~~v 89 (124)
T 2l4c_A 29 VPAAMEFIAATEVAVIGFFQDLEIPAVP----ILH--SMVQKF-PGVSFGISTD---SEVLTHY--------NIT-GNTI 89 (124)
T ss_dssp HHHHHHHHHTSSEEEEEECSCTTSTHHH----HHH--HHHHHC-TTSEEEEECC---HHHHHHT--------TCC-SSCE
T ss_pred HHHHHHHHhcCCCEEEEEECCCCChhHH----HHH--HHHHhC-CCceEEEECh---HHHHHHc--------CCC-CCeE
Confidence 4456666677899999999999999954 344 778888 6666666643 5566554 544 6888
Q ss_pred EEECC
Q 003940 208 VFLSP 212 (784)
Q Consensus 208 vfl~p 212 (784)
+++.+
T Consensus 90 vlfkk 94 (124)
T 2l4c_A 90 CLFRL 94 (124)
T ss_dssp EEEET
T ss_pred EEEEc
Confidence 88876
No 378
>1kwf_A Endoglucanase A; hydrolase, inverting glycosidase, atomic resolution, protein-carbohydrate interactions, reaction mechanism, cellulase; HET: BGC; 0.94A {Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1is9_A 1cem_A
Probab=41.67 E-value=37 Score=36.84 Aligned_cols=93 Identities=11% Similarity=0.009 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCC-CCCCCcchHHHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPS-KAPGFLDDYAFL 625 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~-~~~~~leDyA~l 625 (784)
-.+++||..|++.-++.. ...|.+.|+++++.|.++...+ |...-...+... ...-.++++ +
T Consensus 123 l~IA~ALl~A~~~W~~~g-------------~~~Y~~~A~~i~~~i~~~~~~~--~~~~l~pg~~~~~~~~~npSY~--~ 185 (363)
T 1kwf_A 123 EDIALALIFADKLWGSSG-------------AINYGQEARTLINNLYNHCVEH--GSYVLKPGDRWGGSSVTNPSYF--A 185 (363)
T ss_dssp HHHHHHHHHHHHHHCSSS-------------SSCHHHHHHHHHHHHHHHHBCT--TTCCBCSBSSSCBTTBBCGGGC--C
T ss_pred HHHHHHHHHHHHHhCCCc-------------chhHHHHHHHHHHHHHHHhccC--CCeEEeccccCCCCCEecchhc--C
Confidence 478999999999988610 0269999999999999887764 321111211000 011112222 2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc
Q 003940 626 ISGLLDLYEFGSGTKWLVWAIELQNTQDELF 656 (784)
Q Consensus 626 i~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F 656 (784)
...+-.+++.+++..|.+.+....+.+.+..
T Consensus 186 p~~~~~fa~~~~~~~W~~~~~~~~~~l~~~~ 216 (363)
T 1kwf_A 186 PAWYKVYAQYTGDTRWNQVADKCYQIVEEVK 216 (363)
T ss_dssp HHHHHHHHHHHCCTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCCchHHHHHHHHHHHHHHHh
Confidence 3334445667788899998888877776644
No 379
>3qxf_A Endoglucanase; cellulase, GH8, cellulose synthesis, cellulose degradation,; 1.85A {Escherichia coli k-12} PDB: 3qxq_A*
Probab=40.80 E-value=32 Score=37.30 Aligned_cols=75 Identities=8% Similarity=0.009 Sum_probs=52.0
Q ss_pred HHHHHHHHHhccccC--CCeEEEEec---CCCC---CCCCCcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Q 003940 586 ESAASFIRRHLYDEQ--THRLQHSFR---NGPS---KAPGFLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFL 657 (784)
Q Consensus 586 ~~~a~~l~~~l~d~~--~G~l~~~~~---dg~~---~~~~~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~ 657 (784)
.++..|.+.++...+ .|.+.+.+. +|.. +...=.++=-+.+.||+.+.+..|+..|+..|++|++.+.++-.
T Consensus 53 D~Lw~wt~~~l~~~d~~~~L~aW~w~~~~~g~~~v~D~nsAtDGDl~IA~ALl~A~~~Wg~~~Y~~~A~~il~~I~~~~v 132 (355)
T 3qxf_A 53 DNILDWTQNNLAQGSLKERLPAWLWGKKENSKWEVLDSNSASDGDVWMAWSLLEAGRLWKEQRYTDIGSALLKRIAREEV 132 (355)
T ss_dssp HHHHHHHHHHHSTTCTTTSCCCSEEEECTTSCEEEEECSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHhccCCcccCCceEEEcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 456777778877543 344434442 2321 22233455568999999999999999999999999999988765
Q ss_pred ccC
Q 003940 658 DRE 660 (784)
Q Consensus 658 D~~ 660 (784)
...
T Consensus 133 ~~~ 135 (355)
T 3qxf_A 133 VTV 135 (355)
T ss_dssp EEE
T ss_pred ccC
Confidence 443
No 380
>4gl3_A Putative glucoamylase; PF10091 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 2.01A {Bacteroides uniformis}
Probab=40.00 E-value=80 Score=35.00 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHH-HhccccCCCeEEEEe--cCCCCCCCCC-----
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIR-RHLYDEQTHRLQHSF--RNGPSKAPGF----- 618 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~-~~l~d~~~G~l~~~~--~dg~~~~~~~----- 618 (784)
|+.+.|++-|.+- |= ....+.++..+++.++|. +.+ +.-.|-|+|-+ +.|++.....
T Consensus 58 Gf~L~a~~va~e~-G~-------------I~~~e~~~R~~~tL~~l~~~~~-~r~~G~fyhwyd~~Tg~~l~~~~~d~~v 122 (424)
T 4gl3_A 58 GFGVMAIIVGIER-GF-------------VTREQGAERMLKIVRFLSDKNT-DSYHGMWAHWMNGKTGKTIPFSRKDDGA 122 (424)
T ss_dssp HHHHHHHHHHHHT-TS-------------SCHHHHHHHHHHHHHHHHCTTS-CCBTTBCCSEEETTTCCEECSBTTBCSE
T ss_pred HHHHHHHHHHHHc-CC-------------CCHHHHHHHHHHHHHHHhhccc-cccCCccccceeCCCCCCCCCcCCCCcc
Confidence 7888888777652 10 123678899999999985 334 22357787764 2344433332
Q ss_pred -cchHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhccc
Q 003940 619 -LDDYAFLISGLLDLYEFGSG-----TKWLVWAIELQNTQDELFLD 658 (784)
Q Consensus 619 -leDyA~li~aLL~LYeaTgd-----~~yL~~A~~L~~~~~~~F~D 658 (784)
+=|-++++.+||-+-+...+ .+-.++|.+|++.++-.|+.
T Consensus 123 StVDtg~L~~gLl~~~~yf~~~~~~e~~l~~~a~~L~~~~dw~~~~ 168 (424)
T 4gl3_A 123 DIVESAFMFEGLLAAHQYFTKDNPTENRIRGIINNLWRQAEWNFFT 168 (424)
T ss_dssp EHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHCCGGGGG
T ss_pred cHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHcCCHHHHc
Confidence 23889999999999998766 35567777887777666543
No 381
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=39.28 E-value=2.6e+02 Score=33.43 Aligned_cols=59 Identities=15% Similarity=0.106 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhccccCCCeEEEEec--CCCC--CC-CCCcchHHHHHHHHHHHHHHcCCHHHHH
Q 003940 583 EVAESAASFIRRHLYDEQTHRLQHSFR--NGPS--KA-PGFLDDYAFLISGLLDLYEFGSGTKWLV 643 (784)
Q Consensus 583 e~A~~~a~~l~~~l~d~~~G~l~~~~~--dg~~--~~-~~~leDyA~li~aLL~LYeaTgd~~yL~ 643 (784)
+.|++...++..+... +|.+.|.+. .++. .+ ..+.||..+++.++.++++.|||..+|+
T Consensus 375 ~~~r~~il~~~~~Q~~--dG~~~h~~~p~~~~g~~~~~~~~~D~~lW~i~av~~Y~~~TGD~~~L~ 438 (811)
T 3qde_A 375 ERARERLLDLAATQLE--DGSAYHQYQPLTKKGNNEIGSNFNDDPLWLILATAAYIKETGDYSILK 438 (811)
T ss_dssp HHHHHHHHHHHTTBCT--TSCBCSEECTTTCCEECTTCCCBTTHHHHHHHHHHHHHHHHCCGGGGG
T ss_pred HHHHHHHHHHHhhccc--CCCccceecCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHCCHHHHH
Confidence 4566666666655543 577877764 3321 12 3578888999999999999999999985
No 382
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens}
Probab=38.34 E-value=2.3e+02 Score=36.36 Aligned_cols=79 Identities=9% Similarity=-0.011 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHh
Q 003940 336 EGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRD 415 (784)
Q Consensus 336 ~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~ 415 (784)
++.+.+...++.+.. +-+-+|||.-+.-++. +-+--.+..|..+..+++|.....-+ ..+..++++||.+
T Consensus 980 ~a~~~i~~g~~~ll~---~q~~dGgf~~f~~~~~----~~~~s~wlTAyv~~~l~~a~~~~~v~--~~~l~~a~~wL~~- 1049 (1451)
T 4acq_A 980 KAIGYLNTGYQRQLN---YKHYDGSYSTFGERYG----RNQGNTWLTAFVLKTFAQARAYIFID--EAHITQALIWLSQ- 1049 (1451)
T ss_dssp HHHHHHHHHHHHHGG---GBCTTSCBCSSTTGGG----CCCCCHHHHHHHHHHHHHHTTTSCCC--THHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHh---hcCCCCCeeeccCCCC----CCCCchhHHHHHHHHHHHhhhhcccC--HHHHHHHHHHHHh-
Confidence 466667777777765 5556899875421100 01123456899999999987653211 3577899999997
Q ss_pred ccCCCCcee
Q 003940 416 MIGPGGEIF 424 (784)
Q Consensus 416 m~~~~Ggfy 424 (784)
.+.++|.|+
T Consensus 1050 ~Q~~dG~f~ 1058 (1451)
T 4acq_A 1050 RQKDNGCFR 1058 (1451)
T ss_dssp TEETTTEEC
T ss_pred hcccCCccc
Confidence 467788886
No 383
>1wu4_A Xylanase Y; (alpla/alpha)6 barrel, glycoside hydrolase family 8, hydrola; 1.35A {Bacillus halodurans} SCOP: a.102.1.2 PDB: 1wu5_A* 3a3v_A 2drr_A 2drs_A 1wu6_A* 2drq_A 2dro_A
Probab=38.23 E-value=1.4e+02 Score=32.57 Aligned_cols=133 Identities=11% Similarity=0.069 Sum_probs=75.4
Q ss_pred HHHHHHHHHhccccC---CCeEEEEec-CCCC-CCCCCcchHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHh
Q 003940 586 ESAASFIRRHLYDEQ---THRLQHSFR-NGPS-KAPGFLDDYAFLISGLLDLYEFGS-----GTKWLVWAIELQNTQDEL 655 (784)
Q Consensus 586 ~~~a~~l~~~l~d~~---~G~l~~~~~-dg~~-~~~~~leDyA~li~aLL~LYeaTg-----d~~yL~~A~~L~~~~~~~ 655 (784)
.++..|.+++|..++ .|.+-|.+. +|+. +...=+++=-+.+.||+.+.+..| +..|++.|++|++.+..+
T Consensus 89 D~l~~wt~~~l~~~~~~~~~L~aW~~~~~~~~~~~n~AtDgDl~IA~ALl~A~~~Wg~~~g~~~~Y~~~A~~il~~i~~~ 168 (396)
T 1wu4_A 89 DRIWNWTMKNMYMTEGVHAGYFAWSCQPDGTKNSWGPAPDGEEYFALALFFASHRWGDGDEQPFNYSEQARKLLHTCVHN 168 (396)
T ss_dssp HHHHHHHHHHTBCCSSTTTTSBCSEECTTSCBSCSCCCHHHHHHHHHHHHHHHHHHCCCSSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCcccCCCceEEECCCCCcCCCCCCCHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHh
Confidence 467788888886555 566666653 3332 122334455689999999999999 688999999999998887
Q ss_pred ccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHH-HHHhCCCCchHHHHHHHHHHHHHHH
Q 003940 656 FLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL-ASIVAGSKSDYYRQNAEHSLAVFET 725 (784)
Q Consensus 656 F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL-~~lt~~~~~~~y~e~A~~~l~~~~~ 725 (784)
-.... |+-...++. .++ ......+...||=-. -.+.++ +.+.....++.|.+.++..++.+..
T Consensus 169 ~~~~~-~~~~l~p~~--~~~-~f~~~~~~~npSY~~---pa~~~~fa~~~~~~~~~~W~~~~~~~~~lL~~ 232 (396)
T 1wu4_A 169 GEGGP-GHPMWNRDN--KLI-KFIPEVEFSDPSYHL---PHFYELFSLWANEEDRVFWKEAAEASREYLKI 232 (396)
T ss_dssp TSSSS-CCCSBCTTT--CCB-CSSTTCSEECGGGCC---HHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH
T ss_pred hccCC-CcceecCCC--cee-eecCCCCeeChhhcc---HHHHHHHHHhcccccChhHHHHHHHHHHHHHh
Confidence 55432 221111111 101 111111222233322 355666 3322111135688888887776543
No 384
>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A
Probab=37.81 E-value=1e+02 Score=32.86 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=51.1
Q ss_pred hhhcccCCCcccccchHHHHHHHhh-cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHH
Q 003940 112 YLLQHAHNPVDWFAWGEEAFAEARK-RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKV 190 (784)
Q Consensus 112 YL~qha~~~v~W~~~~~eal~~Ak~-e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~ 190 (784)
|++++...+|.-... .+.++.-.+ ++++++|-|+.+||..+.. .|. ++|..+..++....++ .+++.+.
T Consensus 118 ~i~~~~~~~v~~i~~-~~~~~~~~~~~~~~~vv~ff~~~~~~~~~----~f~--~~A~~~~~~~~F~~~~---~~~~~~~ 187 (367)
T 3us3_A 118 FLLDVLEDPVELIEG-ERELQAFENIEDEIKLIGYFKNKDSEHYK----AFK--EAAEEFHPYIPFFATF---DSKVAKK 187 (367)
T ss_dssp HHHHHHSCSEEECCS-HHHHHHHHHCCSSCEEEEECSCTTCHHHH----HHH--HHHHHHTTTSCEEEEC---CHHHHHH
T ss_pred HHHHhcCCCcEEcCC-HHHHHHHhccCCCcEEEEEECCCCchHHH----HHH--HHHHhhcCCcEEEEEC---CHHHHHH
Confidence 566666666644433 344555555 6789999999998875543 233 5777776554444443 3455555
Q ss_pred HHHHHHHhcCCCCCCcEEEECC
Q 003940 191 YMTYVQALYGGGGWPLSVFLSP 212 (784)
Q Consensus 191 y~~~~q~~~g~~G~P~~vfl~p 212 (784)
| ++.+ |+.+++.+
T Consensus 188 ~--------~v~~-p~i~lf~~ 200 (367)
T 3us3_A 188 L--------TLKL-NEIDFYEA 200 (367)
T ss_dssp H--------TCCT-TCEEEECT
T ss_pred c--------CCCC-CeEEEEcC
Confidence 5 6554 99998877
No 385
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=37.63 E-value=35 Score=34.92 Aligned_cols=79 Identities=10% Similarity=0.059 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 003940 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 413 (784)
Q Consensus 334 ~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~ 413 (784)
.+++.+.+....+.+.. +-+-+|||.-|..+ +--.+..|..+..++.|-....-+ .++..++++||.
T Consensus 33 ~~~~~~~i~~g~~~~l~---~q~~dGgf~~f~~~--------~~s~wlTa~v~~~l~~a~~~~~v~--~~~i~~a~~~L~ 99 (277)
T 1qqf_A 33 RQEALELIKKGYTQQLA---FKQPISAYAAFNNR--------PPSTWLTAYVSRVFSLAANLIAID--SQVLCGAVKWLI 99 (277)
T ss_dssp HHHHHHHHHHHHHHHHT---TBCTTSCBCSSTTS--------CCCHHHHHHHHHHHHHHTTTSCCC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hcCCCCCccccCCC--------CccHHHHHHHHHHHHHHhhcCCCC--HHHHHHHHHHHH
Confidence 35788888888888876 56778999643321 223567899999999997654222 467789999998
Q ss_pred HhccCCCCceee
Q 003940 414 RDMIGPGGEIFS 425 (784)
Q Consensus 414 ~~m~~~~Ggfys 425 (784)
++.+.++|.|+.
T Consensus 100 ~~~Q~~dG~f~~ 111 (277)
T 1qqf_A 100 LEKQKPDGVFQE 111 (277)
T ss_dssp HHHBCTTSCBCC
T ss_pred HhccCCCCCccC
Confidence 646678898864
No 386
>1h12_A Endo-1,4-beta-xylanase; hydrolase, xylan degradation, psychrophilic, cold adaptation, temperature, glycosyl hydrolase, family 8; HET: XYP XYS; 1.2A {Pseudoalteromonas haloplanktis} SCOP: a.102.1.2 PDB: 1h13_A 1xw2_A 1xwq_A* 1h14_A 1xwt_A 2b4f_A* 2a8z_A*
Probab=37.57 E-value=48 Score=36.53 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHHHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAFLI 626 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~li 626 (784)
-.+++||+.|++.-++.. ...|++.|+++++.|.++- +++|.+. +..+.. ..--+ ++.+
T Consensus 147 l~IA~ALl~A~~~Wg~~g-------------~~~Y~~~A~~il~~I~~~~--~~~~~~~--f~p~~~-~~~np---SY~~ 205 (405)
T 1h12_A 147 EYFAFALLNASARWGNSG-------------EFNYYNDAITMLNTIKNKL--MENQIIR--FSPYID-NLTDP---SYHI 205 (405)
T ss_dssp HHHHHHHHHHHHHHCSSS-------------SCCHHHHHHHHHHHHHHHS--EETTEEC--SCTTCS-SCBCG---GGCC
T ss_pred HHHHHHHHHHHHHcCCCC-------------chhHHHHHHHHHHHHHHhC--CCCCeeE--EecCCC-CeeCh---hhcC
Confidence 478899999999988411 1579999999999998886 3344332 222221 11112 3334
Q ss_pred HHHHHH-HHHcCC----HHHHHHHHHHHHHHHHhc
Q 003940 627 SGLLDL-YEFGSG----TKWLVWAIELQNTQDELF 656 (784)
Q Consensus 627 ~aLL~L-YeaTgd----~~yL~~A~~L~~~~~~~F 656 (784)
-+++++ ++++++ +.|.+.+....+.+.+..
T Consensus 206 pa~~~~fa~~~~~~~~~~~W~~v~~~~~~lL~~~~ 240 (405)
T 1h12_A 206 PAFYDYFANNVTNQADKNYWRQVATKSRTLLKNHF 240 (405)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHHHhc
Confidence 577777 566767 779998888877776554
No 387
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=37.54 E-value=2.5e+02 Score=31.63 Aligned_cols=111 Identities=17% Similarity=0.171 Sum_probs=63.8
Q ss_pred CcchHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHhccccC-CCcccccCCC---CCcc-------------c
Q 003940 618 FLDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDRE-GGGYFNTTGE---DPSV-------------L 675 (784)
Q Consensus 618 ~leDyA~li~aLL~LYeaTgd~-----~yL~~A~~L~~~~~~~F~D~~-~Ggyf~t~~~---~~~l-------------~ 675 (784)
-+|-.|+.+.++-.+|+.|||. .|.+..+.+++.+.+...++. .|-|-+.... .+++ +
T Consensus 178 ElDSla~~L~la~~Yy~~TgD~~~f~~~w~~av~~il~~l~~eq~~~~~~~~Y~F~r~t~~~~dtl~~~G~G~pv~~tGL 257 (489)
T 2p0v_A 178 EIDSLCYPIRLAYHYWKTTGDASVFSDEWLQAIANVLKTFKEQQRKDDAKGPYRFQRKTERALDTMTNDGWGNPVKPVGL 257 (489)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCTTSSHHHHHHHHHHHHHHHHTTCSSCSSCSCCCCCCBSCGGGSCHHHHTCSCCCCSSC
T ss_pred hhhhhHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHHHHhcccCCCCCceEeecCCCcccccccCCCCCccCCCCc
Confidence 4567799999999999999965 566777888888877665432 2444432100 0111 1
Q ss_pred ccc-ccCCCCCCC-----ChhHHHHHHHHHHHHHh---CCCCchHHHHHHHHHHHHHHHHHHHh
Q 003940 676 LRV-KEDHDGAEP-----SGNSVSVINLVRLASIV---AGSKSDYYRQNAEHSLAVFETRLKDM 730 (784)
Q Consensus 676 ~R~-k~~~D~a~P-----S~Nsv~a~~L~rL~~lt---~~~~~~~y~e~A~~~l~~~~~~l~~~ 730 (784)
++. --..|+++- -+|+.+...|-+++++. ++ +....++++++.+.+...|.++
T Consensus 258 i~S~fRPSDDa~~yg~~ipSN~~a~v~L~~aaeia~~v~~--d~~la~~~~~lA~eI~~gI~~~ 319 (489)
T 2p0v_A 258 IASAFRPSDDATTFQFLVPSNFFAVTSLRKAAEILNTVNR--KPALAKECTALADEVEKALKKY 319 (489)
T ss_dssp CCCSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSC--CHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeCCCCCCCcchhcCcchHHHHHHHHHHHHHHHHHHHhcc--CHHHHHHHHHHHHHHHHHHHHh
Confidence 100 111233331 37777777777666654 32 2455566666666665555544
No 388
>3f4s_A Alpha-DSBA1, putative uncharacterized protein; thioredoxin-fold, oxidoreductase; HET: PGE; 1.55A {Wolbachia pipientis} PDB: 3f4r_A* 3f4t_A*
Probab=37.28 E-value=26 Score=35.18 Aligned_cols=21 Identities=19% Similarity=0.137 Sum_probs=18.2
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003940 199 YGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 199 ~g~~G~P~~vfl~pdg~pi~~ 219 (784)
.|+.|+|+++|.+++|+.+.|
T Consensus 167 ~GV~GtPtfvv~~~nG~~~~G 187 (226)
T 3f4s_A 167 LGITAVPIFFIKLNDDKSYIE 187 (226)
T ss_dssp HCCCSSCEEEEEECCTTCCCC
T ss_pred cCCCcCCEEEEEcCCCEEeeC
Confidence 489999999999999997754
No 389
>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A
Probab=36.72 E-value=1.2e+02 Score=31.81 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=49.3
Q ss_pred hhhcccCCCcccccchHHHHHHHhh-cCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHhcccEEEEEcCCCCccHHHH
Q 003940 112 YLLQHAHNPVDWFAWGEEAFAEARK-RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLNDWFVSIKVDREERPDVDKV 190 (784)
Q Consensus 112 YL~qha~~~v~W~~~~~eal~~Ak~-e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ee~pdi~~~ 190 (784)
++.++...++.=... .+.++...+ .+++++|.|+.+||..+.. .|. +++..+..++....++ .+++.+.
T Consensus 116 ~i~~~~~~~~~~l~~-~~~~~~~~~~~~~~~vv~ff~~~~~~~~~----~~~--~~A~~~~~~~~f~~~~---~~~~~~~ 185 (350)
T 1sji_A 116 FLLDLIEDPVEIINS-KLEVQAFERIEDQIKLIGFFKSEESEYYK----AFE--EAAEHFQPYIKFFATF---DKGVAKK 185 (350)
T ss_dssp HHHTTSSCSEEECCS-HHHHHHHHHCCSSCEEEEECSCTTSHHHH----HHH--HHHHHTTTTSEEEEEC---CHHHHHH
T ss_pred HHHHhcCCcceeccc-hHHHHHHhccCCCcEEEEEECCCCcHHHH----HHH--HHHHhhccCcEEEEEC---CHHHHHH
Confidence 344444444332222 445555555 6778899999998765532 333 5677775555555553 3455554
Q ss_pred HHHHHHHhcCCCCCCcEEEECCC
Q 003940 191 YMTYVQALYGGGGWPLSVFLSPD 213 (784)
Q Consensus 191 y~~~~q~~~g~~G~P~~vfl~pd 213 (784)
| ++. .|+.+++.+.
T Consensus 186 ~--------~v~-~p~i~~~~~~ 199 (350)
T 1sji_A 186 L--------SLK-MNEVDFYEPF 199 (350)
T ss_dssp H--------TCC-TTCEEEECTT
T ss_pred c--------CCC-CCcEEEEeCC
Confidence 4 666 8999999874
No 390
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=36.30 E-value=25 Score=31.82 Aligned_cols=59 Identities=17% Similarity=0.330 Sum_probs=33.9
Q ss_pred EEEcccCChhhhhhhhcccCCHHHHHHHhcc-cEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003940 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (784)
Q Consensus 143 l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~-FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~ 215 (784)
..++.++|.+|++-. ++|+++ .-+..+|..+.|.-.......++.+ |.|.--+++..|.
T Consensus 6 ~iY~~~~C~~c~ka~----------~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~----g~~~~~l~n~~~~ 65 (120)
T 3fz4_A 6 TFYEYPKCSTCRRAK----------AELDDLAWDYDAIDIKKNPPAASLIRNWLENS----GLELKKFFNTSGQ 65 (120)
T ss_dssp EEEECSSCHHHHHHH----------HHHHHHTCCEEEEETTTSCCCHHHHHHHHHHS----CCCGGGGBCTTSH
T ss_pred EEEeCCCChHHHHHH----------HHHHHcCCceEEEEeccCchhHHHHHHHHHHc----CCCHHHHhCCCCc
Confidence 456899999999864 345443 2233456655554444444444333 6666566666654
No 391
>2vn4_A Glucoamylase; hydrolase, carbohydrate binding, glycoside hydrolase family 15, amyloglucosidase; HET: MAN NAG BTB; 1.85A {Hypocrea jecorina} PDB: 2vn7_A*
Probab=36.02 E-value=5.5e+02 Score=29.46 Aligned_cols=96 Identities=9% Similarity=0.031 Sum_probs=55.6
Q ss_pred hchHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchH
Q 003940 543 VSWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDY 622 (784)
Q Consensus 543 tsWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDy 622 (784)
+.-.++.+.||.++.++... +..+ .+.|.+.|.++.++| +++|+++ |.|...+.++.. ...-+|-
T Consensus 186 ~~T~~~~~~aL~~aa~lA~~------~g~~-----~~~w~~~ad~i~~~i-~~~w~~~-g~f~~~~~~~~~-~~~~lDa- 250 (599)
T 2vn4_A 186 FFTVANQHRALVEGATLAAT------LGQS-----GSAYSSVAPQVLCFL-QRFWVSS-GGYVDSNINTNE-GRTGKDV- 250 (599)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------HTCC-----CHHHHHHHHHHHHHH-GGGEETT-TTEECSEESSCC-CCCCCBT-
T ss_pred hHHHHHHHHHHHHHHHHHHH------cCCC-----HHHHHHHHHHHHHHH-HhhcCCC-CCEEEEecCccC-CCCCcCH-
Confidence 33446677788777665432 0111 278999999999999 8999986 777766532210 0111222
Q ss_pred HHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHHHH
Q 003940 623 AFLISGLLDLYEF----------GSGTKWLVWAIELQNTQDE 654 (784)
Q Consensus 623 A~li~aLL~LYea----------Tgd~~yL~~A~~L~~~~~~ 654 (784)
+.++..+. .|.. -.|++.+...+.+.+.+..
T Consensus 251 s~LL~~~~-~f~~~~~~~~~~~~p~dpr~l~Tl~ai~~~L~~ 291 (599)
T 2vn4_A 251 NSVLTSIH-TFDPNLGCDAGTFQPCSDKALSNLKVVVDSFRS 291 (599)
T ss_dssp HHHHHHHH-SCCGGGTTCTTTTCTTSHHHHHHHHHHHHHHHT
T ss_pred HHHhhhhc-cCCccccccccCCCCCCHHHHHHHHHHHHHHHh
Confidence 33322221 2221 1677888888877776653
No 392
>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12
Probab=35.80 E-value=23 Score=31.97 Aligned_cols=60 Identities=13% Similarity=0.053 Sum_probs=33.0
Q ss_pred EEEcccCChhhhhhhhcccCCHHHHHHHhcc-cEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCce
Q 003940 143 LSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLKP 216 (784)
Q Consensus 143 l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~-FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~p 216 (784)
..++.++|++|++-. ++|+++ .-+..+|..+.|.-.......++. .|.|.--+++..|..
T Consensus 3 ~iY~~~~C~~c~ka~----------~~L~~~gi~~~~~di~~~~~~~~el~~~l~~----~~~~~~~l~n~~~~~ 63 (120)
T 3l78_A 3 TLFLSPSCTSCRKAR----------AWLNRHDVVFQEHNIMTSPLSRDELLKILSY----TENGTEDIISTRSKV 63 (120)
T ss_dssp EEEECSSCHHHHHHH----------HHHHHTTCCEEEEETTTSCCCHHHHHHHHHH----CSSTHHHHBCTTCHH
T ss_pred EEEeCCCCHHHHHHH----------HHHHHcCCCeEEEecccCCCcHHHHHHHHhh----cCCCHHHhhcCCcHH
Confidence 457899999999854 344432 222345665544433344333332 255655666666543
No 393
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=35.76 E-value=1.6e+02 Score=31.55 Aligned_cols=115 Identities=7% Similarity=0.051 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCC-h----hHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCC
Q 003940 284 ALRLCAEQLSKSYDSRFGGFGSAPKFPR-P----VEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVG 358 (784)
Q Consensus 284 ~l~~~~~~l~~~~D~~~GGfg~aPKFP~-p----~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~ 358 (784)
.++.+++.+...- ...||||.=++-+. + ..+.+|.+..... ..+ ..++.+.++-+.. +-.-+
T Consensus 92 ~i~~g~~~ll~~Q-~~dGgf~~~~~~~~~~~lTa~v~~~l~~a~~~~------~v~---~~~i~~a~~~L~~---~Q~~d 158 (367)
T 1hzf_A 92 LIQKGYMRIQQFR-KADGSYAAWLSRDSSTWLTAFVLKVLSLAQEQV------GGS---PEKLQETSNWLLS---QQQAD 158 (367)
T ss_dssp HHHHHHHHHHTTB-CTTSCBCSSTTSCCCHHHHHHHHHHHHHHGGGT------CCC---HHHHHHHHHHHGG---GBCTT
T ss_pred HHHHHHHHHHhcc-CCCCCeeccCCCCCcHHHHHHHHHHHHHHHHHh------CCC---HHHHHHHHHHHHH---hhccC
Confidence 4566666665433 44788875433222 2 2333333322111 011 3456666666644 22346
Q ss_pred CeEEEEecCCCCCCCCCch---------hHHHHHHHHHHHHHHHHccCC-------hHHHHHHHHHHHHHHHhc
Q 003940 359 GGFHRYSVDERWHVPHFEK---------MLYDQGQLANVYLDAFSLTKD-------VFYSYICRDILDYLRRDM 416 (784)
Q Consensus 359 GGF~RYsvD~~W~vPHFEK---------MLyDNA~Ll~~ya~Ay~~t~d-------~~y~~~A~~t~~fl~~~m 416 (784)
|+|.. .|.+-|-+. -++-.|..+.++.++.....+ +.+...++++++||.+++
T Consensus 159 G~~~~-----~~~~~~~~~~gg~~~~~~~~~lTA~vl~aL~~~g~~~~~~~~~~~~~~~~~~i~ra~~yL~~~~ 227 (367)
T 1hzf_A 159 GSFQD-----PCPVLDRSMQGGLVGNDETVALTAFVTIALHHGLAVFQDEGAEPLKQRVEASISKASSFLGEKA 227 (367)
T ss_dssp SCBCC-----SSCCSCGGGGGGGSSTTHHHHHHHHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccc-----ccccccccccCCCCCCcccccchHHHHHHHHhhhccccccccchhhhhhHHHHHHHHHHHHHhh
Confidence 88864 566655332 266678999999888776554 346678889999998864
No 394
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A*
Probab=35.11 E-value=4.5e+02 Score=30.27 Aligned_cols=120 Identities=15% Similarity=0.059 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCeEEEEecCC--------CC-C----CCCC--------cchHHHHHHHHHHHHHHcC
Q 003940 579 KEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG--------PS-K----APGF--------LDDYAFLISGLLDLYEFGS 637 (784)
Q Consensus 579 ~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg--------~~-~----~~~~--------leDyA~li~aLL~LYeaTg 637 (784)
+..|+.++-.++||++.... .+.|+....+| .+ . .+.+ .+--+.++.+|...+.+..
T Consensus 91 ~d~ldeikwg~Dyllk~~~~--~~~~y~qVGdg~~DH~~w~~pe~m~~~r~~y~~~~~~pgsd~a~~~AAAlAaAS~vfk 168 (605)
T 1tf4_A 91 PYLKDNLRWVNDYFIKAHPS--PNVLYVQVGDGDADHKWWGPAEVMPMERPSFKVDPSCPGSDVAAETAAAMAASSIVFA 168 (605)
T ss_dssp HHHHHHHHHHHHHHHHTCSB--TTBEEEEESCHHHHHHCCSCGGGCCSCCCEEEEBTTBCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHhccC--CCeEEEEeCCCCcCccccCChhhCCCCCceeEecCCCCcchHHHHHHHHHHHHHhhcc
Confidence 78999999999999987533 45677655443 11 0 0000 1222345556666666655
Q ss_pred --CH----HHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCC---hhHHHHHHHHHHHHHhCCCC
Q 003940 638 --GT----KWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPS---GNSVSVINLVRLASIVAGSK 708 (784)
Q Consensus 638 --d~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS---~Nsv~a~~L~rL~~lt~~~~ 708 (784)
|+ ++|+.|+++++.+..+ .|. |..... . . +...| -.--++-+-..|++.||+
T Consensus 169 ~~D~~yA~~~L~~Ak~~~~fA~~~-----~g~-y~~~~~-~------~----~~Y~s~s~~~DEl~WAAawLy~ATgd-- 229 (605)
T 1tf4_A 169 DDDPAYAATLVQHAKQLYTFADTY-----RGV-YSDCVP-A------G----AFYNSWSGYQDELVWGAYWLYKATGD-- 229 (605)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHS-----CCC-GGGTST-T------H----HHHCCSSCSHHHHHHHHHHHHHHHCC--
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHc-----CCC-cCCCCC-c------c----ccccCCCCCchHHHHHHHHHHHHhCC--
Confidence 44 5688888888887653 122 221100 0 0 00111 112355566788999986
Q ss_pred chHHHHHHHHHH
Q 003940 709 SDYYRQNAEHSL 720 (784)
Q Consensus 709 ~~~y~e~A~~~l 720 (784)
..|++.+++..
T Consensus 230 -~~Yl~~a~~~~ 240 (605)
T 1tf4_A 230 -DSYLAKAEYEY 240 (605)
T ss_dssp -HHHHHHHHHHG
T ss_pred -HHHHHHHHHHH
Confidence 78999987744
No 395
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=34.39 E-value=16 Score=33.10 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=34.4
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcc-cEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCCCc
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPDLK 215 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~-FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pdg~ 215 (784)
+..++.++|.+|++-. ++|+++ .-+..+|..+.|.-.......++.+ |+|.--+++..|.
T Consensus 6 i~iY~~p~C~~c~ka~----------~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~----g~~~~~l~n~~~~ 66 (120)
T 3gkx_A 6 TLFLQYPACSTCQKAK----------KWLIENNIEYTNRLIVDDNPTVEELKAWIPLS----GLPVKKFFNTSGV 66 (120)
T ss_dssp CEEEECTTCHHHHHHH----------HHHHHTTCCCEEEETTTTCCCHHHHHHHHHHH----TSCGGGGBCTTSH
T ss_pred EEEEECCCChHHHHHH----------HHHHHcCCceEEEecccCcCCHHHHHHHHHHc----CCCHHHeEeCCCc
Confidence 3457899999999854 345543 2223356655554434444444433 7776666666544
No 396
>2p0v_A Hypothetical protein BT3781; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.102.1.8
Probab=34.33 E-value=3e+02 Score=31.00 Aligned_cols=152 Identities=13% Similarity=0.115 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccC-CC-----------------------
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQ-TH----------------------- 602 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~-~G----------------------- 602 (784)
|..|.++...++.+||.. -| .+.|.++.+.+++++.+...+++ .|
T Consensus 183 a~~L~la~~Yy~~TgD~~---~f--------~~~w~~av~~il~~l~~eq~~~~~~~~Y~F~r~t~~~~dtl~~~G~G~p 251 (489)
T 2p0v_A 183 CYPIRLAYHYWKTTGDAS---VF--------SDEWLQAIANVLKTFKEQQRKDDAKGPYRFQRKTERALDTMTNDGWGNP 251 (489)
T ss_dssp HHHHHHHHHHHHHHCCCT---TS--------SHHHHHHHHHHHHHHHHTTCSSCSSCSCCCCCCBSCGGGSCHHHHTCSC
T ss_pred HHHHHHHHHHHHHhCCch---hh--------HHHHHHHHHHHHHHHHHHhcccCCCCCceEeecCCCcccccccCCCCCc
Confidence 889999999999999831 12 26898999999999988765532 11
Q ss_pred ----eEEEE-ecCC-CCC-CCCCcchHHHHHHHHHHHHHH---cC-CH----HHHHHHHHHHHHHHHhccccC--CCccc
Q 003940 603 ----RLQHS-FRNG-PSK-APGFLDDYAFLISGLLDLYEF---GS-GT----KWLVWAIELQNTQDELFLDRE--GGGYF 665 (784)
Q Consensus 603 ----~l~~~-~~dg-~~~-~~~~leDyA~li~aLL~LYea---Tg-d~----~yL~~A~~L~~~~~~~F~D~~--~Ggyf 665 (784)
|+.++ +|-. .+. ..=+....+++..+|-.+.++ .+ +. +|.+.|.++-+.+.++.++.+ .|..|
T Consensus 252 v~~tGLi~S~fRPSDDa~~yg~~ipSN~~a~v~L~~aaeia~~v~~d~~la~~~~~lA~eI~~gI~~~gv~~~p~~G~if 331 (489)
T 2p0v_A 252 VKPVGLIASAFRPSDDATTFQFLVPSNFFAVTSLRKAAEILNTVNRKPALAKECTALADEVEKALKKYAVCNHPKYGKIY 331 (489)
T ss_dssp CCCSSCCCCSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHSEEEETTTEEEE
T ss_pred cCCCCceeCCCCCCCcchhcCcchHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCEecCCCCccEE
Confidence 12111 1100 000 111223557777777666643 33 43 477888888888888888654 34222
Q ss_pred --ccCCCCCccccccccCCC-CCCCChhHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 003940 666 --NTTGEDPSVLLRVKEDHD-GAEPSGNSVSVINLVRLASIVAGSKSDYYRQNAEHSLAV 722 (784)
Q Consensus 666 --~t~~~~~~l~~R~k~~~D-~a~PS~Nsv~a~~L~rL~~lt~~~~~~~y~e~A~~~l~~ 722 (784)
.+.+ -... ..+| .-.||=-|+- -|+-+..+ |+.|....+.+++.
T Consensus 332 AyEVDG-~G~~-----~~mDDanvpSLLslP-----ylG~~~~d--Dpiy~nTr~~IlS~ 378 (489)
T 2p0v_A 332 AFEVDG-FGNQ-----LLMDDANVPSLIALP-----YLGDVKVT--DPIYQNTRKFVWSE 378 (489)
T ss_dssp CSEECS-SSCE-----ECCCCSSSSCSTTHH-----HHTSSCTT--CHHHHHHHHHHTST
T ss_pred EEEecC-CCCc-----ccCCCCCccHHHHHH-----HhCCCCCC--CHHHHHHHHHHHhh
Confidence 2211 1111 1123 3447766532 22322233 47887766666554
No 397
>4fnv_A Heparinase III protein, heparitin sulfate lyase; toroid fold, -sandwich fold, heparan sulfate degradation; 1.60A {Bacteroides thetaiotaomicron}
Probab=33.53 E-value=6.4e+02 Score=29.49 Aligned_cols=88 Identities=7% Similarity=-0.086 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCCCCCCcchHHH
Q 003940 545 WNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSKAPGFLDDYAF 624 (784)
Q Consensus 545 WNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~~~~~leDyA~ 624 (784)
|--..+.||+.++.++++. .+.++|++.|.+..+.-.+....++ |+.+ ..-+.-+.+
T Consensus 261 h~l~~~~aL~~agl~~pe~------------~~~~~w~~~A~~~L~~el~~Qi~~D-G~~~----------E~Sp~Yh~~ 317 (702)
T 4fnv_A 261 ILISQANALATAGTLMPEF------------KNAEKWMNTGYQILSEEVQNQIMSD-GWHK----------EMSLHYHIG 317 (702)
T ss_dssp HHHHHHHHHHHHHHHCTTB------------TTHHHHHHHHHHHHHHHHHHSBCTT-SCBT----------TCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCC------------ccHHHHHHHHHHHHHHHHHhhcCCC-Cccc----------cCCHHHHHH
Confidence 4444467888898888751 1136899999998877666655654 4321 222344455
Q ss_pred HHHHHHHH---HHHcCC-----HHHHHHHHHHHHHHHHh
Q 003940 625 LISGLLDL---YEFGSG-----TKWLVWAIELQNTQDEL 655 (784)
Q Consensus 625 li~aLL~L---YeaTgd-----~~yL~~A~~L~~~~~~~ 655 (784)
++..|+.+ .+..|- +.+.+..+++...+...
T Consensus 318 vL~~ll~~~~la~~~g~~~~~p~~~~~~L~km~~~l~~l 356 (702)
T 4fnv_A 318 IVADFYEAMKLAEANQLSSKLPSDFTEPLRKAAEVVMYF 356 (702)
T ss_dssp HHHHHHHHHHHHHHTTCGGGSCTTTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 55555544 344443 34566666666666443
No 398
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=33.22 E-value=45 Score=34.83 Aligned_cols=79 Identities=10% Similarity=0.070 Sum_probs=56.5
Q ss_pred cHHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHH
Q 003940 334 ASEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLR 413 (784)
Q Consensus 334 ~~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~ 413 (784)
.+++.+++....+.+.. +-+-+|||.-|..+ +--.+..|..+.+++.|-+...-+ .++..++++||.
T Consensus 49 ~~~~~~~i~~g~~~~l~---~q~~dGgf~~f~~~--------~~s~wlTa~v~~~l~~a~~~~~v~--~~~i~~a~~~L~ 115 (310)
T 2wy7_A 49 RQGALELIKKGYTQQLA---FRQPSSAFAAFVKR--------APSTWLTAYVVKVFSLAVNLIAID--SQVLCGAVKWLI 115 (310)
T ss_dssp HHHHHHHHHHHHHHHHT---TBCTTSCBCSSTTS--------CCCHHHHHHHHHHHHHHTTTSCCC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---hcCCCCCcccCCCC--------CccHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHH
Confidence 35778888888888876 56678999643211 223567899999999987653222 467789999998
Q ss_pred HhccCCCCceee
Q 003940 414 RDMIGPGGEIFS 425 (784)
Q Consensus 414 ~~m~~~~Ggfys 425 (784)
++.+.++|.|+.
T Consensus 116 ~~~Q~~dGsf~~ 127 (310)
T 2wy7_A 116 LEKQKPDGVFQE 127 (310)
T ss_dssp HHHBCTTSCBCC
T ss_pred HhhcCCCCcccc
Confidence 646678898864
No 399
>1wu4_A Xylanase Y; (alpla/alpha)6 barrel, glycoside hydrolase family 8, hydrola; 1.35A {Bacillus halodurans} SCOP: a.102.1.2 PDB: 1wu5_A* 3a3v_A 2drr_A 2drs_A 1wu6_A* 2drq_A 2dro_A
Probab=33.22 E-value=56 Score=35.85 Aligned_cols=97 Identities=11% Similarity=-0.005 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCC-hHHHHHHHHHHHHHHHHhccccCCCeEEEEecCC-CCC-CCCCcchHH
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSD-RKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNG-PSK-APGFLDDYA 623 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~-~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg-~~~-~~~~leDyA 623 (784)
-.+++||..|++.-++. .. ...|.+.|+++++.|.++-.....|.++. .... -.. .....-+=+
T Consensus 131 l~IA~ALl~A~~~Wg~~------------~g~~~~Y~~~A~~il~~i~~~~~~~~~~~~l~-p~~~~~~f~~~~~~~npS 197 (396)
T 1wu4_A 131 EYFALALFFASHRWGDG------------DEQPFNYSEQARKLLHTCVHNGEGGPGHPMWN-RDNKLIKFIPEVEFSDPS 197 (396)
T ss_dssp HHHHHHHHHHHHHHCCC------------SSTTCCHHHHHHHHHHHHHHTTSSSSCCCSBC-TTTCCBCSSTTCSEECGG
T ss_pred HHHHHHHHHHHHHhCCC------------CCCcHHHHHHHHHHHHHHHHhhccCCCcceec-CCCceeeecCCCCeeChh
Confidence 47889999999998841 00 15799999999999988765421111110 0000 000 001111223
Q ss_pred HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHhc
Q 003940 624 FLISGLLDLYE----FGSGTKWLVWAIELQNTQDELF 656 (784)
Q Consensus 624 ~li~aLL~LYe----aTgd~~yL~~A~~L~~~~~~~F 656 (784)
+.+-++.+++. .++++.|.+.+....+.+.+..
T Consensus 198 Y~~pa~~~~fa~~~~~~~~~~W~~~~~~~~~lL~~~~ 234 (396)
T 1wu4_A 198 YHLPHFYELFSLWANEEDRVFWKEAAEASREYLKIAC 234 (396)
T ss_dssp GCCHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHHS
T ss_pred hccHHHHHHHHHhcccccChhHHHHHHHHHHHHHhcc
Confidence 34457778755 5577789999998888876664
No 400
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A*
Probab=32.93 E-value=85 Score=36.38 Aligned_cols=94 Identities=12% Similarity=-0.038 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCCCC---------CCC
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGPSK---------APG 617 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~~~---------~~~ 617 (784)
++++.||..++... + -...+++.+||++...+. .|.+....+++.+. ..+
T Consensus 315 a~~l~AL~~~G~~~-~-------------------~~~~~ka~~~L~~~q~~~-~g~~~~~~~~~s~GgW~f~~~~~~~p 373 (631)
T 2sqc_A 315 GLAVLALRAAGLPA-D-------------------HDRLVKAGEWLLDRQITV-PGDWAVKRPNLKPGGFAFQFDNVYYP 373 (631)
T ss_dssp HHHHHHHHHTTCCT-T-------------------CHHHHHHHHHHHHTCCCS-CCGGGGTCTTSCCCCBCSSSSCTTCC
T ss_pred HHHHHHHHHcCCCC-C-------------------CHHHHHHHHHHHHhcCCC-CCChhhhcCCCCCCCCccccCCCCCC
Confidence 67788887775311 1 135667778888876542 23221112222221 124
Q ss_pred CcchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcc
Q 003940 618 FLDDYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGY 664 (784)
Q Consensus 618 ~leDyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggy 664 (784)
..+|-|+++.+|+.+.. ..+..+.+...+..+.+...- . .+|||
T Consensus 374 ~v~dTA~al~AL~~~~~-~~~~~~~~~l~~a~~wLls~Q-~-~dGgf 417 (631)
T 2sqc_A 374 DVCDTAVVVWALNTLRL-PDERRRRDAMTKGFRWIVGMQ-S-SNGGW 417 (631)
T ss_dssp BHHHHHHHHHHHTTCCC-SCHHHHHHHHHHHHHHHHHTC-C-TTSCB
T ss_pred chHHHHHHHHHHHHcCC-CccchhHHHHHHHHHHHHhhc-C-CCCCC
Confidence 46788999999988764 333455566666677766643 2 24666
No 401
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*
Probab=32.86 E-value=46 Score=37.91 Aligned_cols=49 Identities=10% Similarity=0.096 Sum_probs=37.2
Q ss_pred cchHHHHHHHH---HHHHHHcCCH----HHHHHHHHHHHHHHHhccccCCCccccc
Q 003940 619 LDDYAFLISGL---LDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNT 667 (784)
Q Consensus 619 leDyA~li~aL---L~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t 667 (784)
.|-+|++..++ .++++..|++ +|.+.|.++.+.+.+.|||++.|.|++.
T Consensus 305 VDlnA~ly~a~~~la~lA~~lG~~~~a~~~~~~A~~lk~ai~~~fWdee~G~y~D~ 360 (535)
T 2jg0_A 305 VDLNSLMFKMEKILARASKAAGDNAMANQYETLANARQKGIEKYLWNDQQGWYADY 360 (535)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSEETTTTEECCE
T ss_pred hHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcCCCCCEEEEE
Confidence 44456555544 5566677875 6899999999999999999998888753
No 402
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=31.77 E-value=2.9e+02 Score=32.54 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=33.6
Q ss_pred HHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 003940 546 NGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 607 (784)
Q Consensus 546 Nal~I~---ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~ 607 (784)
|+++.. .+++.++.+|+... .++|.+.|.++.+.+.+++|+++.+.|...
T Consensus 505 ~a~~y~al~~~a~la~~lG~~~~------------a~~~~~~A~~lk~~~~~~~w~~~~~~f~~~ 557 (807)
T 1v7w_A 505 SFLHFWALQEFIDLAKFLGKDQD------------VNTYTEMAANVREACETHLWDDEGGWYIRG 557 (807)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHHHSEETTTTEECCE
T ss_pred HHHHHHHHHHHHHHHHHcCCHHH------------HHHHHHHHHHHHHHHHHhccCCCCCeeeee
Confidence 455544 44555666665210 267999999999999999999765544333
No 403
>3p2c_A Putative glycosyl hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE PGE; 1.60A {Bacteroides ovatus} SCOP: a.102.1.8 PDB: 3on6_A*
Probab=31.66 E-value=4.5e+02 Score=29.39 Aligned_cols=113 Identities=17% Similarity=0.196 Sum_probs=66.6
Q ss_pred cchHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHhccccCCCcccccCCCC---C--------------cccc
Q 003940 619 LDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREGGGYFNTTGED---P--------------SVLL 676 (784)
Q Consensus 619 leDyA~li~aLL~LYeaTgd~-----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~---~--------------~l~~ 676 (784)
++--|+.+.-.-.+|+.|||. .|++..+.+++.+.+.-.....+-|.+.-... + .++-
T Consensus 162 lDSL~~~l~La~~y~~~Tgd~~~f~~~w~~a~~~il~~~~~~q~~~~~s~Y~f~R~t~~~tdtl~~~G~G~pv~~tGli~ 241 (463)
T 3p2c_A 162 IDSLCYPLRLAYHYWKTTGDASIFNEEWIQAITNVLKTFKEQQRKDGVGPYKFQRKTERALDTVSNDGLGAPVKPVGLIV 241 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTCSHHHHHHHHHHHHHHHHTTCSSSSCSCCCBCCBSCGGGSCHHHHTCSCCCCSSCCB
T ss_pred hhhhhHHHHHHHHHHHhhCChhhhcHHHHHHHHHHHHHHHHHhccCCCCCceEeecCCCCCcccCCCCcCCCcCCCCcee
Confidence 345588888888999999954 68888888888877654322223344321100 0 1111
Q ss_pred ccccCCCCCCC-----ChhHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHHHHhh
Q 003940 677 RVKEDHDGAEP-----SGNSVSVINLVRLASIVAGS-KSDYYRQNAEHSLAVFETRLKDMA 731 (784)
Q Consensus 677 R~k~~~D~a~P-----S~Nsv~a~~L~rL~~lt~~~-~~~~y~e~A~~~l~~~~~~l~~~p 731 (784)
..--..|+++- -+|..++..|-+++.+...- .+..+.+.++++-+.+...|.++.
T Consensus 242 S~FRPSDDa~~~~~~iPsN~~a~v~L~~aaei~~~l~~d~~la~~~~~lA~eIr~gI~k~g 302 (463)
T 3p2c_A 242 SSFRPSDDATTLQFLVPSNFFAVSSLRKAAEILEKVNKKTALSKECKDLAQEVETALKKYA 302 (463)
T ss_dssp CSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCcccccCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhC
Confidence 11233466663 47888888888777665310 125566666666666666666554
No 404
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=30.89 E-value=85 Score=34.59 Aligned_cols=64 Identities=23% Similarity=0.267 Sum_probs=43.5
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHH-
Q 003940 452 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF- 526 (784)
Q Consensus 452 Ei~~~Lg----~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~- 526 (784)
++..+|. .+..++.-.|++..+. | .+..++|+.+|++.+.+.+.+..++++|.
T Consensus 353 ~L~~aL~~L~~rer~Vl~lr~~L~~~e---------------~-------~Tl~EIA~~lgiS~erVrqi~~rAl~kLR~ 410 (423)
T 2a6h_F 353 ELEKALSKLSEREAMVLKLRKGLIDGR---------------E-------HTLEEVGAFFGVTRERIRQIENKALRKLKY 410 (423)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHTTCC---------------------------CHHHHSSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhccCCCC---------------C-------CCHHHHHHHHCcCHHHHHHHHHHHHHHHHh
Confidence 3455554 3456778888886321 1 13468999999999999999999999998
Q ss_pred h-hhcCCCCCCC
Q 003940 527 D-VRSKRPRPHL 537 (784)
Q Consensus 527 ~-~R~~R~~P~l 537 (784)
. .|.++.+.++
T Consensus 411 ~~~~~~~l~~~l 422 (423)
T 2a6h_F 411 HESRTRKLRDFL 422 (423)
T ss_dssp HHHHTTSSSSCC
T ss_pred hhhhhHHHHHhh
Confidence 3 4445555554
No 405
>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}
Probab=30.50 E-value=55 Score=31.47 Aligned_cols=26 Identities=8% Similarity=-0.225 Sum_probs=18.0
Q ss_pred cCCcEEEEEc-ccCChhhhhhhhcccCC
Q 003940 137 RDVPIFLSIG-YSTCHWCHVMEVESFED 163 (784)
Q Consensus 137 e~KpI~l~~~-~~wC~wC~~Me~etf~d 163 (784)
.+|+|+|.|+ .+||+-|..-- ..|.+
T Consensus 41 ~gk~vVL~fyP~~fTp~Ct~e~-~~f~~ 67 (171)
T 2xhf_A 41 RGRKGILFSVVGAFVPGSNNHI-PEYLS 67 (171)
T ss_dssp TTSEEEEEECSCTTCTTTTSSH-HHHHH
T ss_pred CCCeEEEEEECCCCCCcCHHHH-HHHHH
Confidence 4788888776 68999997633 34443
No 406
>3cih_A Putative alpha-rhamnosidase; structural genomics, protein structure initiative II, NYSGXRC, (alpha/alpha)6 barrel domain; 2.33A {Bacteroides thetaiotaomicron vpi-5482}
Probab=29.78 E-value=74 Score=37.56 Aligned_cols=55 Identities=13% Similarity=0.303 Sum_probs=38.6
Q ss_pred HHHHHH---HHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEecCCC
Q 003940 546 NGLVIS---SFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSFRNGP 612 (784)
Q Consensus 546 Nal~I~---ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~~dg~ 612 (784)
|+++.. .+++.++++|+... ..+|.+.|.++.+.+.++|||++.|.+...+.+|.
T Consensus 457 ~a~~y~al~~~a~lA~~lG~~~~------------A~~y~~~A~~lk~a~~~~~wd~~~G~y~~~~~~G~ 514 (739)
T 3cih_A 457 QVLFCRSLETMALCADLVGDKDG------------QQKYEKLASALKAKLEPTFWNNQKQAFVHNCVDGR 514 (739)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHH------------HHHHHHHHHHHHHHHHHHHEETTTTEECSEEETTE
T ss_pred HHHHHHHHHHHHHHHHHcCChHH------------HHHHHHHHHHHHHHHHHhccCcccCeeEeecCCCC
Confidence 455544 55666777776210 26799999999999999999987777665454553
No 407
>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}
Probab=29.52 E-value=28 Score=31.54 Aligned_cols=62 Identities=13% Similarity=0.073 Sum_probs=36.4
Q ss_pred EEEEcccCChhhhhhhhcccCCHHHHHHHhcc-cEEEEEcCCCCccHHHHHHHHHHHhcCCCCC-CcEEEECCCCcee
Q 003940 142 FLSIGYSTCHWCHVMEVESFEDEGVAKLLNDW-FVSIKVDREERPDVDKVYMTYVQALYGGGGW-PLSVFLSPDLKPL 217 (784)
Q Consensus 142 ~l~~~~~wC~wC~~Me~etf~d~eVa~~ln~~-FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~-P~~vfl~pdg~pi 217 (784)
+..++.++|.+|++-. ++|+++ .-+..+|..+.|.-.......++.+ || |..-+++..|...
T Consensus 7 i~iY~~p~C~~c~ka~----------~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~----g~~~~~~l~n~~~~~~ 70 (121)
T 3rdw_A 7 VTIYHNPRCSKSRETL----------ALVEQQGITPQVVLYLETPPSVDKLKELLQQL----GFSDARQLMRTKEDLY 70 (121)
T ss_dssp CEEECCTTCHHHHHHH----------HHHHTTTCCCEEECTTTSCCCHHHHHHHHHHT----TCSSGGGGBCTTSHHH
T ss_pred EEEEECCCCHHHHHHH----------HHHHHcCCCcEEEeeccCCCcHHHHHHHHHhc----CCcCHHHHhcCCChhh
Confidence 3457899999999854 355543 2223566665554444444444333 78 7655677766543
No 408
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=29.42 E-value=1.4e+02 Score=25.99 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=25.6
Q ss_pred chHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 003940 500 SSASASKLGMPLEKYLNILGECRRKLFD 527 (784)
Q Consensus 500 ~~~~a~~~g~~~~~l~~~l~~~r~kL~~ 527 (784)
..++|..+|++.+.+...+..++.+|..
T Consensus 42 ~~EIA~~lgiS~~tVr~~~~rAlkkLR~ 69 (99)
T 3t72_q 42 LEEVGKQFDVTRERIRQIEAKALRKLRH 69 (99)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999975
No 409
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A
Probab=29.06 E-value=4.5e+02 Score=26.36 Aligned_cols=120 Identities=9% Similarity=-0.017 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCh-hHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCCeEE
Q 003940 284 ALRLCAEQLSKSYDSRFGGFGSAPKFPRP-VEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFH 362 (784)
Q Consensus 284 ~l~~~~~~l~~~~D~~~GGfg~aPKFP~p-~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~ 362 (784)
.++..++.+.. +-...||||.-++=|.. ..-.+.+.........+ ..++. ++.++++=+.. -.-+-+|+|.
T Consensus 39 ~i~~g~~~~l~-~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~--~v~~~---~i~~a~~~L~~--~~Q~~dG~f~ 110 (277)
T 1qqf_A 39 LIKKGYTQQLA-FKQPISAYAAFNNRPPSTWLTAYVSRVFSLAANLI--AIDSQ---VLCGAVKWLIL--EKQKPDGVFQ 110 (277)
T ss_dssp HHHHHHHHHHT-TBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS--CCCHH---HHHHHHHHHHH--HHBCTTSCBC
T ss_pred HHHHHHHHHHH-hcCCCCCccccCCCCccHHHHHHHHHHHHHHhhcC--CCCHH---HHHHHHHHHHH--hccCCCCCcc
Confidence 34555555653 45668888775554432 22222222222111111 11233 33344433321 0112357775
Q ss_pred EEecCCCCCCCCCc----------hhHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHhc
Q 003940 363 RYSVDERWHVPHFE----------KMLYDQGQLANVYLDAFSLT--KDVFYSYICRDILDYLRRDM 416 (784)
Q Consensus 363 RYsvD~~W~vPHFE----------KMLyDNA~Ll~~ya~Ay~~t--~d~~y~~~A~~t~~fl~~~m 416 (784)
. .|.+.|-+ .-++-.|..+.++.++.... +-+.....++++++||.+..
T Consensus 111 ~-----~~~~~~~~~~g~~~~~~~~~~~lta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~ 171 (277)
T 1qqf_A 111 E-----DGPVIHQEMIGGFRNTKEADVSLTAFVLIALQEARDICEGQVNSLPGSINKAGEYLEASY 171 (277)
T ss_dssp C-----SSCCSCGGGGGGGGSCTTHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHH
T ss_pred C-----CccccchhhcCCCCCCccCccchHHHHHHHHHhhhhccccCCCchHHHHHHHHHHHHHHh
Confidence 3 56666532 12566889999998887653 33456678899999998865
No 410
>3qxf_A Endoglucanase; cellulase, GH8, cellulose synthesis, cellulose degradation,; 1.85A {Escherichia coli k-12} PDB: 3qxq_A*
Probab=28.57 E-value=63 Score=35.03 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCC-eEEEE-----ecCCCCCCCCCcc
Q 003940 547 GLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTH-RLQHS-----FRNGPSKAPGFLD 620 (784)
Q Consensus 547 al~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G-~l~~~-----~~dg~~~~~~~le 620 (784)
-.+++||+.|++.-++ +.|.+.|+++++.|.++...+..| +.... |.++. ...-
T Consensus 98 l~IA~ALl~A~~~Wg~----------------~~Y~~~A~~il~~I~~~~v~~~~g~~~~LlpG~~gF~~~~----~~~~ 157 (355)
T 3qxf_A 98 VWMAWSLLEAGRLWKE----------------QRYTDIGSALLKRIAREEVVTVPGLGSMLLPGKVGFAEDN----SWRF 157 (355)
T ss_dssp HHHHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHHHHHEEEETTTEEEECSSSSSSEETT----EEEE
T ss_pred HHHHHHHHHHHHHhCC----------------HHHHHHHHHHHHHHHHhccccCCCCceeecCcccCccCCC----CCee
Confidence 4788999999999987 789999999999998876554323 22211 11111 0001
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Q 003940 621 DYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDEL 655 (784)
Q Consensus 621 DyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~ 655 (784)
+=++++-++++++... +..|.+.+....+.+.+.
T Consensus 158 nPSY~~p~~~~~fa~~-~~~W~~l~~~~~~lL~~~ 191 (355)
T 3qxf_A 158 NPSYLPPTLAQYFTRF-GAPWTTLRETNQRLLLET 191 (355)
T ss_dssp CTTSSCHHHHHHHGGG-CTTHHHHHHHHHHHHHHT
T ss_pred chhhccHHHHHHHHHh-CChHHHHHHHHHHHHHHh
Confidence 1133445667666655 778999888888887663
No 411
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4
Probab=28.56 E-value=93 Score=33.35 Aligned_cols=77 Identities=6% Similarity=0.057 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 003940 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 414 (784)
Q Consensus 335 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~ 414 (784)
+++.+.+...++.+.. . -+-+|||.-|-.+ .--.+..|..+.++++|.+....+ ..+.+++++||.+
T Consensus 87 ~~~~~~i~~g~~~ll~--~-Q~~dGgf~~~~~~--------~~~~~lTa~v~~~l~~a~~~~~v~--~~~i~~a~~~L~~ 153 (367)
T 1hzf_A 87 DHAVDLIQKGYMRIQQ--F-RKADGSYAAWLSR--------DSSTWLTAFVLKVLSLAQEQVGGS--PEKLQETSNWLLS 153 (367)
T ss_dssp HHHHHHHHHHHHHHHT--T-BCTTSCBCSSTTS--------CCCHHHHHHHHHHHHHHGGGTCCC--HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHh--c-cCCCCCeeccCCC--------CCcHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHH
Confidence 4667778888887765 3 3458999543222 113467899999999997764322 4678899999987
Q ss_pred hccCCCCceee
Q 003940 415 DMIGPGGEIFS 425 (784)
Q Consensus 415 ~m~~~~Ggfys 425 (784)
.+.++|+|+.
T Consensus 154 -~Q~~dG~~~~ 163 (367)
T 1hzf_A 154 -QQQADGSFQD 163 (367)
T ss_dssp -GBCTTSCBCC
T ss_pred -hhccCCCccc
Confidence 5678999875
No 412
>2fba_A Glucoamylase Glu1; (alpha-alpha)6 barrel, TRIS, hydrolase; 1.10A {Saccharomycopsis fibuligera} SCOP: a.102.1.1 PDB: 1ayx_A* 2f6d_A
Probab=28.54 E-value=2.5e+02 Score=31.49 Aligned_cols=119 Identities=13% Similarity=0.044 Sum_probs=67.1
Q ss_pred CCCCCCchhhhchHHHHHHHHHHHHHHhhhhhhhh----cccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEEe
Q 003940 533 PRPHLDDKVIVSWNGLVISSFARASKILKSEAESA----MFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHSF 608 (784)
Q Consensus 533 ~~P~lDdKiitsWNal~I~ALa~a~~~~~d~~~~~----~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~~ 608 (784)
.+|.+|-. |+.+.++....+.+.+..... .|...........|-..-+..++|+.++...++. +++. -
T Consensus 140 ~~~Q~D~~------g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~v~~~w~~pd~-dlWE-e 211 (492)
T 2fba_A 140 GRPQNDGP------ALRAYAISRYLNDVNSLNEGKLVLTDSGDINFSSTEDIYKNIIKPDLEYVIGYWDSTGF-DLWE-E 211 (492)
T ss_dssp SCCBTTHH------HHHHHHHHHHHHHHHHHSTTCCSSTTCTTCSCSSHHHHHHHTHHHHHHHHHHHTTSCEE-CTTS-C
T ss_pred CCccccch------hHHHHHHHHHHHHhhccccchhhhhhhccccccccHHHHHHHHHHHHHHHHHhcCCCCC-CCcC-c
Confidence 35778887 998888888766655421000 0000000000123447889999999887544321 1211 1
Q ss_pred cCCCCCCCCCcchHHHHHHHH---HHHHHHcCC----HHHHHHHHHHHHHHHHh---ccccCCCcc
Q 003940 609 RNGPSKAPGFLDDYAFLISGL---LDLYEFGSG----TKWLVWAIELQNTQDEL---FLDREGGGY 664 (784)
Q Consensus 609 ~dg~~~~~~~leDyA~li~aL---L~LYeaTgd----~~yL~~A~~L~~~~~~~---F~D~~~Ggy 664 (784)
+.| .+..--+.+..|| .++.+..|+ +.|.+.|.++.+.+.++ ||+++.|.|
T Consensus 212 r~g-----~~~~T~~~~~~AL~~aa~lA~~~g~~~~a~~w~~~ad~i~~~I~~~~~~~w~~~~~~f 272 (492)
T 2fba_A 212 NQG-----RHFFTSLVQQKALAYAVDIAKSFDDGDFANTLSSTASTLESYLSGSDGGFVNTDVNHI 272 (492)
T ss_dssp CEE-----CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHSTTTCCEETTTTEE
T ss_pred cCC-----CChHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhhcCCCCCCCEE
Confidence 111 2333445555666 445666676 46888888899999888 998764433
No 413
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B*
Probab=28.03 E-value=1.4e+02 Score=32.45 Aligned_cols=114 Identities=11% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHHHHHhhcc-c-------cCCCCCCCCCC------------------CChhHHHHHHHhhhhccccCCCCCcHHHHH
Q 003940 286 RLCAEQLSKSYD-S-------RFGGFGSAPKF------------------PRPVEIQMMLYHSKKLEDTGKSGEASEGQK 339 (784)
Q Consensus 286 ~~~~~~l~~~~D-~-------~~GGfg~aPKF------------------P~p~~l~~Ll~~~~~~~~~~~~~~~~~~~~ 339 (784)
+.+++-+...-- | ..|||+..|+. |+...-..-+.....-++.-+....+++.+
T Consensus 70 ~~~i~wils~Q~~p~~~~~~~~~GGF~g~~~~~~p~~d~~~~~~~~~~d~~~v~~T~~Al~~L~~lg~~~~~id~~~~~~ 149 (377)
T 1n4q_B 70 DDIIEWIYSLQVLPTEDRSNLDRCGFRGSSYLGIPFNPSKNPGTAHPYDSGHIAMTYTGLSCLIILGDDLSRVDKEACLA 149 (377)
T ss_dssp HHHHHHHHTTEECCCTTCTTGGGCEECSSSTTCCCCCSSCSCCCCCTTCCCCHHHHHHHHHHHHHTTCCSTTSCHHHHHH
T ss_pred HHHHHHHHHhcCCccccccCCCCCccCCCcccCCChhhhccccccccCCCCCHHHHHHHHHHHHHhCcccchhhHHHHHH
Q ss_pred HHHHHHHHHHcCCCcccCCCeEEEEecCC-CCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHhccC
Q 003940 340 MVLFTLQCMAKGGIHDHVGGGFHRYSVDE-RWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRRDMIG 418 (784)
Q Consensus 340 ~~~~TL~~m~~GGi~D~v~GGF~RYsvD~-~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~~m~~ 418 (784)
. |..+.. -+|||+. . .|-..+ -+..+.=+.+-.+.+. .=....+++++||++ .+.
T Consensus 150 f----L~~~Q~------~DGSf~g----~~~wGe~D--------irftY~Al~~l~llg~-~~~~~v~ka~~fL~s-cQn 205 (377)
T 1n4q_B 150 G----LRALQL------EDGSFCA----VPEGSEND--------MRFVYCASCICYMLNN-WSGMDMKKAISYIRR-SMS 205 (377)
T ss_dssp H----HHHHBC------TTSCBCS----STTCCCCB--------HHHHHHHHHHHHHTTC-GGGSCHHHHHHHHHH-TBC
T ss_pred H----HHHhcC------CCCCeee----ccCCCcch--------hHHHHHHHHHHHHhcC-CChHHHHHHHHHHHH-hcC
Q ss_pred CCCce
Q 003940 419 PGGEI 423 (784)
Q Consensus 419 ~~Ggf 423 (784)
++|||
T Consensus 206 ~DGGf 210 (377)
T 1n4q_B 206 YDNGL 210 (377)
T ss_dssp TTSSB
T ss_pred CCCCC
No 414
>3qt9_A Putative uncharacterized protein CPE0426; alpha-alpha six fold, glycoside hydrolase, mannosidase, HYDR; HET: YDR; 2.05A {Clostridium perfringens} SCOP: a.102.1.8 PDB: 3qt3_A* 2nvp_A
Probab=27.84 E-value=4e+02 Score=29.43 Aligned_cols=113 Identities=11% Similarity=0.061 Sum_probs=66.4
Q ss_pred cchHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHhccccCCCcccccCCCC---C--------------cccc
Q 003940 619 LDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREGGGYFNTTGED---P--------------SVLL 676 (784)
Q Consensus 619 leDyA~li~aLL~LYeaTgd~-----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~---~--------------~l~~ 676 (784)
++--|+.+.-.-.+|+.|||. .|++..+.+++.+.+.-.....+.|.+.-... + .++-
T Consensus 134 lDSL~~~l~La~~y~~~Tgd~~~f~~~w~~a~~~il~~~~~~q~~~~~s~Y~f~R~t~~~tdtl~~~G~G~pv~~tGli~ 213 (427)
T 3qt9_A 134 IDSLCYPVRLIHKYWKESGDETFFNYDIKKAFNMIIDLWRVEQYHREKSDYSFQRLNCSVTDTLSHEGLGTPVTYTGMTW 213 (427)
T ss_dssp THHHHHHHHHHHHHHHHHCCCTTCCHHHHHHHHHHHHHHHHGGGHHHHCCCCCBCSSSCGGGSCHHHHTCSCCCCCSSCC
T ss_pred HhhhHHHHHHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHhccCCCCCceEeccCCCCCccccCCCCCCCcCCCCcee
Confidence 345588888888999999965 67888888887776654221223343321100 0 1111
Q ss_pred ccccCCCCCCC-----ChhHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHHHHHHHHHhh
Q 003940 677 RVKEDHDGAEP-----SGNSVSVINLVRLASIVAGS-KSDYYRQNAEHSLAVFETRLKDMA 731 (784)
Q Consensus 677 R~k~~~D~a~P-----S~Nsv~a~~L~rL~~lt~~~-~~~~y~e~A~~~l~~~~~~l~~~p 731 (784)
..--..|+++- .+|..++..|-+++.+...- .+..+.++++++-+.+...|.++.
T Consensus 214 S~FRPSDDa~~~~~~iPsN~~a~vaL~~~aei~~~l~~d~~La~~~~~la~eIr~aI~k~g 274 (427)
T 3qt9_A 214 SGFRPSDDACEYGYLIPANMFAVVALRYISEIAEKVYKDEELKEKADSLREEIDNAIEKHG 274 (427)
T ss_dssp CSBCTTSCBCSSSEEHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCcccccCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 11233466663 47888888888877766210 125566777666666666666554
No 415
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B*
Probab=27.12 E-value=2.3e+02 Score=32.15 Aligned_cols=22 Identities=5% Similarity=0.061 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhccCCCCceee
Q 003940 403 YICRDILDYLRRDMIGPGGEIFS 425 (784)
Q Consensus 403 ~~A~~t~~fl~~~m~~~~Ggfys 425 (784)
...+++++||++ .+..+|||-.
T Consensus 215 ~~v~kav~fI~s-cQn~DGGfGe 236 (520)
T 3q7a_B 215 ELLHNVDKFVSA-CQTYEGGFAC 236 (520)
T ss_dssp HHHTTHHHHHHT-TBCTTSSBCS
T ss_pred HHHHHHHHHHHH-hcCCCCCccC
Confidence 357889999987 6678999854
No 416
>2wam_A RV2714, conserved hypothetical alanine and leucine rich protein; unknown function; 2.60A {Mycobacterium tuberculosis}
Probab=26.51 E-value=2.2e+02 Score=30.70 Aligned_cols=161 Identities=15% Similarity=0.173 Sum_probs=100.1
Q ss_pred CCChhhhcccCCC-cccccchHHHHHHHhhcCCcEEEEEccc--CCh---hhhhhhhcccCCHHHHHHHhcccEEEEEcC
Q 003940 108 EHSPYLLQHAHNP-VDWFAWGEEAFAEARKRDVPIFLSIGYS--TCH---WCHVMEVESFEDEGVAKLLNDWFVSIKVDR 181 (784)
Q Consensus 108 e~SpYL~qha~~~-v~W~~~~~eal~~Ak~e~KpI~l~~~~~--wC~---wC~~Me~etf~d~eVa~~ln~~FV~VkvD~ 181 (784)
...|+|..+...| ..|..+..+.++.|++-|---+|.+|+= -|+ +..+.-. -+++++.+.+...+-.+
T Consensus 140 ~g~~~LlL~G~eP~~~w~~fa~~vl~~a~~~gV~~vvtLgglp~~vphtRp~~V~~~--at~~el~~~~~~~~~~~---- 213 (351)
T 2wam_A 140 IGTPFLLLAGLEPDLKWERFITAVRLLAERLGVRQTIGLGTVPMAVPHTRPITMTAH--SNNRELISDFQPSISEI---- 213 (351)
T ss_dssp TCCEEEEEEEECCSBCHHHHHHHHHHHHHHTTCCEEEEEEEEEESCCTTSCCCEEEE--ESSGGGGTTSCCCCCSE----
T ss_pred CCCcEEEEECCCChhHHHHHHHHHHHHHHHhCCCEEEEEecccCCCCCccCcceEEE--ECCHHHHHhcCCccCcc----
Confidence 3467888887665 8999999999999999998888877653 232 2222211 24666655443211111
Q ss_pred CCCcc-HHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHHHHh--hchHHHHHHHHH
Q 003940 182 EERPD-VDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKDAWD--KKRDMLAQSGAF 258 (784)
Q Consensus 182 ee~pd-i~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~~~~--~~~~~l~~~a~~ 258 (784)
+-|- +...++..+ +..|.|...|+-.- -.|+... .....=+.+|+.|.++.. =+-+.|.+.|++
T Consensus 214 -~gp~GisglL~~~~----~~~Gi~a~~l~~~v------P~Yla~~--pdP~AA~alL~~L~~llgl~ip~~~L~e~Ae~ 280 (351)
T 2wam_A 214 -QVPGSASNLLEYRM----AQHGHEVVGFTVHV------PHYLTQT--DYPAAAQALLEQVAKTGSLQLPLAVLAEAAAE 280 (351)
T ss_dssp -EEECCHHHHHHHHH----HHTTCCEEEEEEEE------EGGGTTS--CCHHHHHHHHHHHHHHHTCCCCCHHHHHHHHH
T ss_pred -cccccHHHHHHHHH----HHcCCCEEEEEEeC------CccccCC--CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 1232 333333333 44699999987320 1244211 012356778888877654 468899999999
Q ss_pred HHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHhhcccc
Q 003940 259 AIEQLSEALSASASSNKLPDELPQNALRLCAEQLSKSYDSR 299 (784)
Q Consensus 259 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~D~~ 299 (784)
+.+++++..... . .+.+.+++|.+++|..
T Consensus 281 ie~~i~el~~~~-----------~-e~~~~V~~LE~qyD~~ 309 (351)
T 2wam_A 281 VQAKIDEQVQAS-----------A-EVAQVVAALERQYDAF 309 (351)
T ss_dssp HHHHHHHHHTTC-----------H-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-----------H-HHHHHHHHHHhhhchh
Confidence 999998865431 1 2456778888899885
No 417
>3qry_B Putative uncharacterized protein; alpha-alpha six fold, glycoside hydrolase, mannosidase, 1- deoxymannojirimycin, hydrolase; HET: DMJ; 1.75A {Streptococcus pneumoniae} SCOP: a.102.1.0 PDB: 3qpf_A* 3qsp_A*
Probab=25.71 E-value=4e+02 Score=29.48 Aligned_cols=112 Identities=14% Similarity=0.102 Sum_probs=67.2
Q ss_pred cchHHHHHHHHHHHHHHcCCH-----HHHHHHHHHHHHHHHhccccCCCcccccCCC---CC--------------cccc
Q 003940 619 LDDYAFLISGLLDLYEFGSGT-----KWLVWAIELQNTQDELFLDREGGGYFNTTGE---DP--------------SVLL 676 (784)
Q Consensus 619 leDyA~li~aLL~LYeaTgd~-----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~---~~--------------~l~~ 676 (784)
++--|+.+.-.-.+|+.|||. .|++..+.+++.+.+.- +++.+.|.+.-.. .+ .++-
T Consensus 133 lDSL~~~l~La~~y~~~Tgd~~~f~~~w~~a~~~il~~~~~eq-~~~~s~Y~f~R~t~~~tdtl~~~G~G~pv~~tGli~ 211 (426)
T 3qry_B 133 VDSLCYPLQLAYLLWKETGETSQFDEIFVAATKEILHLWTVEQ-DHKNSPYRFVRDTDRKEDTLVNDGFGPDFAVTGMTW 211 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTTCSHHHHHHHHHHHHHHHHTT-SGGGCCCCCEECCSCGGGSCHHHHTCSCCCCCSSCC
T ss_pred HhhhHHHHHHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHh-ccCCCCceeeecCCCCCccccCCCCCCCcCCCCcee
Confidence 345588888888999999965 68888888888877744 2233444432110 00 1111
Q ss_pred ccccCCCCCCC-----ChhHHHHHHHHHHHHHhC---CCCchHHHHHHHHHHHHHHHHHHHhh
Q 003940 677 RVKEDHDGAEP-----SGNSVSVINLVRLASIVA---GSKSDYYRQNAEHSLAVFETRLKDMA 731 (784)
Q Consensus 677 R~k~~~D~a~P-----S~Nsv~a~~L~rL~~lt~---~~~~~~y~e~A~~~l~~~~~~l~~~p 731 (784)
..--..|+++- -+|..++..|-+++.+.. -..++.+.++++++-+.+...|.++.
T Consensus 212 S~FRPSDDa~~~~~~iPsN~~~~v~L~~~aei~~~~~v~~d~~la~~~~~la~eIr~~I~k~g 274 (426)
T 3qry_B 212 SAFRPSDDCCQYSYLIPSNMFAVVVLGYVQEIFAALNLADSQSVIADAKRLQDEIQEGIKNYA 274 (426)
T ss_dssp CSBCTTSSBCSSSEEHHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCcccccCCCcHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHhc
Confidence 11233466663 478888888888877764 11135566666666666666666554
No 418
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=25.17 E-value=1.5e+02 Score=24.69 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=25.4
Q ss_pred chHHHHhcCCCHHHHHHHHHHHHHHHHh
Q 003940 500 SSASASKLGMPLEKYLNILGECRRKLFD 527 (784)
Q Consensus 500 ~~~~a~~~g~~~~~l~~~l~~~r~kL~~ 527 (784)
..++|+.+|+++..+...+..++.+|..
T Consensus 41 ~~EIA~~lgis~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 41 LEEVGQYFNVTRERIRQIEVKALRKLRH 68 (87)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999954
No 419
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase, alpha/alpha barrel, hydrolase; HET: BMA; 1.50A {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Probab=25.02 E-value=76 Score=37.79 Aligned_cols=44 Identities=11% Similarity=0.103 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHcCCH----HHHHHHHHHHHHHHHhccccCCCcccccC
Q 003940 625 LISGLLDLYEFGSGT----KWLVWAIELQNTQDELFLDREGGGYFNTT 668 (784)
Q Consensus 625 li~aLL~LYeaTgd~----~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~ 668 (784)
+...+.++.+..|++ +|.+.|.++.+.+.++|||++.|.||+..
T Consensus 561 al~~lA~lA~~LG~~e~A~~y~~~A~~lk~ai~~~fWd~e~G~y~D~~ 608 (761)
T 3c68_A 561 DNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQFYYDVR 608 (761)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTEETTTTEECCEE
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcCccCCEEEEEe
Confidence 344555677777875 68899999999999999999888887643
No 420
>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*
Probab=24.24 E-value=69 Score=36.29 Aligned_cols=66 Identities=15% Similarity=0.120 Sum_probs=43.0
Q ss_pred hhcCCcEEEEEcccCChhhhhhhhcccCCHHHHHHHh-cccEEEEEcCCCCccHHHHHHHHHHHhcCCCCCCcEEEECCC
Q 003940 135 RKRDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKLLN-DWFVSIKVDREERPDVDKVYMTYVQALYGGGGWPLSVFLSPD 213 (784)
Q Consensus 135 k~e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ln-~~FV~VkvD~ee~pdi~~~y~~~~q~~~g~~G~P~~vfl~pd 213 (784)
...++++.|.|.-.. +.--.+++.-+. ...|.|....+...++.+.| |+.++|+.|+++++
T Consensus 154 ~~~~~~vallF~~~~----------s~~~~~~~ldl~~~~~v~v~~v~~~~~~l~~kf--------gV~~~Pslvl~~~n 215 (519)
T 3t58_A 154 RNKADYLALVFERED----------SYLGREVTLDLSQYHAVAVRRVLNTESDLVNKF--------GVTDFPSCYLLLRN 215 (519)
T ss_dssp SCCCSEEEEEEECTT----------CCHHHHHHHHTTTCTTEEEEEEETTCHHHHHHH--------TCCCSSEEEEEETT
T ss_pred cCCCCeEEEEecCCc----------hHHHHHHHHHhhccCCeeEEEecCchHHHHHHc--------CCCCCCeEEEEeCC
Confidence 366788888888543 211123333333 34566666555556666665 89999999999999
Q ss_pred Cceec
Q 003940 214 LKPLM 218 (784)
Q Consensus 214 g~pi~ 218 (784)
|+...
T Consensus 216 Gk~~~ 220 (519)
T 3t58_A 216 GSVSR 220 (519)
T ss_dssp SCEEE
T ss_pred Cceee
Confidence 98654
No 421
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=24.18 E-value=34 Score=32.44 Aligned_cols=24 Identities=21% Similarity=0.612 Sum_probs=18.8
Q ss_pred hcCCcEEEEEcccCChhhhhhhhc
Q 003940 136 KRDVPIFLSIGYSTCHWCHVMEVE 159 (784)
Q Consensus 136 ~e~KpI~l~~~~~wC~wC~~Me~e 159 (784)
...|..++.|.-..|+||+.++..
T Consensus 9 ~~a~~~i~~f~D~~Cp~C~~~~~~ 32 (186)
T 3bci_A 9 KNGKPLVVVYGDYKCPYCKELDEK 32 (186)
T ss_dssp --CCCEEEEEECTTCHHHHHHHHH
T ss_pred CCCCeEEEEEECCCChhHHHHHHH
Confidence 345677888999999999999864
No 422
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=23.88 E-value=68 Score=31.24 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=22.9
Q ss_pred cCCcEEEEEcccCChhhhhhhhcccCCHHHHHH
Q 003940 137 RDVPIFLSIGYSTCHWCHVMEVESFEDEGVAKL 169 (784)
Q Consensus 137 e~KpI~l~~~~~wC~wC~~Me~etf~d~eVa~~ 169 (784)
..|..++.|.-..|++|+.++..++ +.+.+.
T Consensus 28 ~a~vtvvef~D~~CP~C~~~~~~~~--~~l~~~ 58 (202)
T 3gha_A 28 DAPVTVVEFGDYKCPSCKVFNSDIF--PKIQKD 58 (202)
T ss_dssp TCSEEEEEEECTTCHHHHHHHHHTH--HHHHHH
T ss_pred CCCEEEEEEECCCChhHHHHHHHhh--HHHHHH
Confidence 3456688899999999999987543 456543
No 423
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=22.76 E-value=84 Score=34.97 Aligned_cols=53 Identities=23% Similarity=0.225 Sum_probs=39.5
Q ss_pred HHHHHhh----hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHHHHHH
Q 003940 452 EVEDILG----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECRRKLF 526 (784)
Q Consensus 452 Ei~~~Lg----~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r~kL~ 526 (784)
++.++|. .+..++.-.|++..+. | .+..++|+.+|++.+.+++++..++++|.
T Consensus 368 ~L~~aL~~L~ereR~VI~LRygL~~~e---------------~-------~TleEIAe~LgIS~erVRqi~~RAlkKLR 424 (438)
T 1l9z_H 368 ELEKALSKLSEREAMVLKLRKGLIDGR---------------E-------HTLEEVGAYFGVTRERIRQIENKALRKLK 424 (438)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCC---------------C-------CCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4455554 2456777888886321 1 24578999999999999999999999997
No 424
>3bci_A Disulfide bond protein A; thiol-disulfide oxidoreductase, redox protein, protein folding, redox active centre; 1.81A {Staphylococcus aureus} PDB: 3bd2_A 3bck_A
Probab=22.61 E-value=42 Score=31.75 Aligned_cols=18 Identities=6% Similarity=-0.112 Sum_probs=14.2
Q ss_pred cCCCCCCcEEEECCCCceecc
Q 003940 199 YGGGGWPLSVFLSPDLKPLMG 219 (784)
Q Consensus 199 ~g~~G~P~~vfl~pdg~pi~~ 219 (784)
.|+.|+|+++| +|+.+.+
T Consensus 145 ~gv~GtPt~vv---nG~~~~G 162 (186)
T 3bci_A 145 NHIKTTPTAFI---NGEKVED 162 (186)
T ss_dssp TTCCSSSEEEE---TTEECSC
T ss_pred cCCCCCCeEEE---CCEEcCC
Confidence 38999999987 7876653
No 425
>2h8l_A Protein disulfide-isomerase A3; thioredoxin-like fold; 2.00A {Homo sapiens}
Probab=22.52 E-value=3e+02 Score=27.21 Aligned_cols=69 Identities=12% Similarity=-0.022 Sum_probs=40.2
Q ss_pred cCCcEEEEEcccCC-hh--hhhhhhcccCCHHHHHHHhcc---cEEEEEcCCCCccHHHHHHHHHHHhcCC----CCCCc
Q 003940 137 RDVPIFLSIGYSTC-HW--CHVMEVESFEDEGVAKLLNDW---FVSIKVDREERPDVDKVYMTYVQALYGG----GGWPL 206 (784)
Q Consensus 137 e~KpI~l~~~~~wC-~w--C~~Me~etf~d~eVa~~ln~~---FV~VkvD~ee~pdi~~~y~~~~q~~~g~----~G~P~ 206 (784)
.++|++|.|....+ .. |..--.+.+. +||+.+... +..+-+|.++.+.+.+. .|. .+.|.
T Consensus 128 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~vA~~~~~k~~~~~F~~~d~~~~~~~~~~--------fgl~~~~~~~P~ 197 (252)
T 2h8l_A 128 QGKDLLIAYYDVDYEKNAKGSNYWRNRVM--MVAKKFLDAGHKLNFAVASRKTFSHELSD--------FGLESTAGEIPV 197 (252)
T ss_dssp SSSSEEEEEECCBTTTBHHHHHHHHHHHH--HHHHHHHHTTCCCEEEEEETTTTHHHHGG--------GTCCCCSCSSCE
T ss_pred cCCCeEEEEeecchhhcchhHHHHHHHHH--HHHHHccccCceEEEEEEchHHHHHHHHH--------cCCCCccCCCCE
Confidence 46787776654322 11 1111112222 477777655 88999998765543222 265 36899
Q ss_pred EEEECCCCc
Q 003940 207 SVFLSPDLK 215 (784)
Q Consensus 207 ~vfl~pdg~ 215 (784)
.++++.+++
T Consensus 198 v~i~~~~~~ 206 (252)
T 2h8l_A 198 VAIRTAKGE 206 (252)
T ss_dssp EEEECTTSC
T ss_pred EEEEeCcCc
Confidence 999987654
No 426
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A
Probab=22.32 E-value=6.4e+02 Score=25.77 Aligned_cols=120 Identities=11% Similarity=-0.025 Sum_probs=63.6
Q ss_pred HHHHHHHHHHhhccccCCCCCCCCCCCCh-hHHHHHHHhhhhccccCCCCCcHHHHHHHHHHHHHHHcCCCcccCCCeEE
Q 003940 284 ALRLCAEQLSKSYDSRFGGFGSAPKFPRP-VEIQMMLYHSKKLEDTGKSGEASEGQKMVLFTLQCMAKGGIHDHVGGGFH 362 (784)
Q Consensus 284 ~l~~~~~~l~~~~D~~~GGfg~aPKFP~p-~~l~~Ll~~~~~~~~~~~~~~~~~~~~~~~~TL~~m~~GGi~D~v~GGF~ 362 (784)
.++..++.+.. +-...||||.-++=|.. ..-.+.+.........+ ..++. ++.++++=+.. -.-+-+|+|.
T Consensus 55 ~i~~g~~~~l~-~q~~dGgf~~f~~~~~s~wlTa~v~~~l~~a~~~~--~v~~~---~i~~a~~~L~~--~~Q~~dGsf~ 126 (310)
T 2wy7_A 55 LIKKGYTQQLA-FRQPSSAFAAFVKRAPSTWLTAYVVKVFSLAVNLI--AIDSQ---VLCGAVKWLIL--EKQKPDGVFQ 126 (310)
T ss_dssp HHHHHHHHHHT-TBCTTSCBCSSTTSCCCHHHHHHHHHHHHHHTTTS--CCCHH---HHHHHHHHHHH--HHBCTTSCBC
T ss_pred HHHHHHHHHHH-hcCCCCCcccCCCCCccHHHHHHHHHHHHHHHhcC--CCCHH---HHHHHHHHHHH--hhcCCCCccc
Confidence 34555555653 45668888876553332 22222222222111111 11223 33444443321 0112356675
Q ss_pred EEecCCCCCCCCCc----------hhHHHHHHHHHHHHHHHHcc--CChHHHHHHHHHHHHHHHhc
Q 003940 363 RYSVDERWHVPHFE----------KMLYDQGQLANVYLDAFSLT--KDVFYSYICRDILDYLRRDM 416 (784)
Q Consensus 363 RYsvD~~W~vPHFE----------KMLyDNA~Ll~~ya~Ay~~t--~d~~y~~~A~~t~~fl~~~m 416 (784)
. .|.+-|-+ .-++-.|..+.++.++.... +-+.....++++++||.+..
T Consensus 127 ~-----~~~~~~~~~~g~~~~~~~~~~~~ta~vl~aL~~~~~~~~~~~~~~~~~i~~A~~~L~~~~ 187 (310)
T 2wy7_A 127 E-----DAPVIHQEMIGGLRNNNEKDMALTAFVLISLQEAKDICEEQVNSLPGSITKAGDFLEANY 187 (310)
T ss_dssp C-----SSCCSCGGGGGGGTTCSCHHHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHG
T ss_pred c-----CCCccCHhhcCCcccccccccchHHHHHHHHHhcccccccCCcchHHHHHHHHHHHHHHh
Confidence 3 56665532 22566899999999887653 33456678899999998865
No 427
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=21.75 E-value=1.4e+03 Score=29.47 Aligned_cols=77 Identities=8% Similarity=-0.024 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHcCCCcccCCCeEEEEecCCCCCCCCCchhHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHH
Q 003940 335 SEGQKMVLFTLQCMAKGGIHDHVGGGFHRYSVDERWHVPHFEKMLYDQGQLANVYLDAFSLTKDVFYSYICRDILDYLRR 414 (784)
Q Consensus 335 ~~~~~~~~~TL~~m~~GGi~D~v~GGF~RYsvD~~W~vPHFEKMLyDNA~Ll~~ya~Ay~~t~d~~y~~~A~~t~~fl~~ 414 (784)
+++.+.+....+++.. |-+-+|||.- | ++-+--.+..|..+..+++|-+...-+ ..+..++++||.+
T Consensus 1043 ~~~~~~i~~g~~r~l~---~q~~dGsfs~------w--~~~~~s~wLTAyv~~~l~~A~~~~~v~--~~~l~~a~~~L~~ 1109 (1676)
T 3cu7_A 1043 QKLKKKLKEGMLSIMS---YRNADYSYSV------W--KGGSASTWLTAFALRVLGQVNKYVEQN--QNSICNSLLWLVE 1109 (1676)
T ss_dssp HHHHHHHHHHHHHGGG---GBCTTSCBCS------S--SSSCCCHHHHHHHHHHHHHHHTTSCCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh---ccCCCCCccc------c--CCCCCcEEEeHHHHHHHHHHHhcccCC--HHHHHHHHHHHHH
Confidence 3455566655665542 4456888863 5 344556788999999999998875322 4677899999998
Q ss_pred hccCCCCcee
Q 003940 415 DMIGPGGEIF 424 (784)
Q Consensus 415 ~m~~~~Ggfy 424 (784)
+-+.++|.|-
T Consensus 1110 ~~q~~~g~f~ 1119 (1676)
T 3cu7_A 1110 NYQLDNGSFK 1119 (1676)
T ss_dssp HSBCTTSCBC
T ss_pred hhCCCCCccc
Confidence 3445677663
No 428
>1g9g_A Cellulase CEL48F; processive-endo, hydrolase; 1.90A {Clostridium cellulolyticum} SCOP: a.102.1.2 PDB: 1f9o_A* 1fbo_A* 1fce_A* 1fae_A 1fbw_A* 1f9d_A* 2qno_A* 1g9j_A*
Probab=21.62 E-value=2.7e+02 Score=31.66 Aligned_cols=110 Identities=14% Similarity=0.068 Sum_probs=70.6
Q ss_pred CCCCchhhhchHHHHHHHHH---HHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE-e--
Q 003940 535 PHLDDKVIVSWNGLVISSFA---RASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS-F-- 608 (784)
Q Consensus 535 P~lDdKiitsWNal~I~ALa---~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~-~-- 608 (784)
|...|----.|=||-.|.+- +.|-++|| ++....-.+-..+++.+..-..+|.+..- .
T Consensus 401 PVYhDPpSN~WfG~QaWsmeRvAeyYY~tGd----------------~~Ak~ildKWv~W~~~~~~~~~~G~f~iPs~L~ 464 (629)
T 1g9g_A 401 PVYADPGSNTWFGMQVWSMQRVAELYYKTGD----------------ARAKKLLDKWAKWINGEIKFNADGTFQIPSTID 464 (629)
T ss_dssp CSCBTTBTTSBTHHHHHHHHHHHHHHHHHCC----------------HHHHHHHHHHHHHHHTSCEECTTSCEEEEEEEE
T ss_pred CccCCCCCCCccccchhhHHHHHHHHHhccc----------------HHHHHHHHHHHHHHHhceEECCCCCEecCCccc
Confidence 43444333458888877654 45557887 56667777777888877533234543321 0
Q ss_pred cCCCCCCC-----------------CCcchH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccC
Q 003940 609 RNGPSKAP-----------------GFLDDY---AFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDRE 660 (784)
Q Consensus 609 ~dg~~~~~-----------------~~leDy---A~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~ 660 (784)
=.|+|+.. ....|- +-++.+|+-....+||....+.|++|++.+...+.|..
T Consensus 465 WsGqPdtW~~~~s~~gN~~lhv~V~~~g~DvGva~s~A~tL~yYAa~sgd~~ak~~Ak~LLD~~W~~~~D~~ 536 (629)
T 1g9g_A 465 WEGQPDTWNPTQGYTGNANLHVKVVNYGTDLGCASSLANTLTYYAAKSGDETSRQNAQKLLDAMWNNYSDSK 536 (629)
T ss_dssp EESCCCCCCTTTCCCCCTTCEEEEEEEECCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHSEETT
T ss_pred ccCCCCccccCCCCCCCCCeEEEEeecCcchhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhCCCCC
Confidence 12444221 111122 56788888888899999999999999999998887743
No 429
>3gha_A Disulfide bond formation protein D; BDBD, DSBA-like, TRX-like, oxidoreductase, competence, redox-active center; 1.40A {Bacillus subtilis} PDB: 3eu4_A 3gh9_A 3eu3_A
Probab=21.55 E-value=70 Score=31.13 Aligned_cols=32 Identities=13% Similarity=0.060 Sum_probs=20.8
Q ss_pred cCCCCCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHH
Q 003940 199 YGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKV 241 (784)
Q Consensus 199 ~g~~G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i 241 (784)
.|+.|+|+++| +|+.+.+ ..|++ .|.++|+++
T Consensus 159 ~gV~gtPtfvv---nG~~~~G--~~~~e------~l~~~i~~~ 190 (202)
T 3gha_A 159 MNIQATPTIYV---NDKVIKN--FADYD------EIKETIEKE 190 (202)
T ss_dssp TTCCSSCEEEE---TTEECSC--TTCHH------HHHHHHHHH
T ss_pred cCCCcCCEEEE---CCEEecC--CCCHH------HHHHHHHHH
Confidence 48999999998 7887654 33432 455555544
No 430
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=21.37 E-value=87 Score=30.21 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=23.4
Q ss_pred cCCCCCCcEEEECCCCceecc-ccccCCCCCCCcchHHHHHHHHH
Q 003940 199 YGGGGWPLSVFLSPDLKPLMG-GTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 199 ~g~~G~P~~vfl~pdg~pi~~-~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
.|+.|+|++||- .+|+.+.. .+|-+++ .|+++++++.
T Consensus 165 ~gv~g~Pt~~v~-~~~~~~~~~~g~~~~e------~~~~~i~~~~ 202 (208)
T 3kzq_A 165 LGVNSYPSLVLQ-INDAYFPIEVDYLSTE------PTLKLIRERI 202 (208)
T ss_dssp TTCCSSSEEEEE-ETTEEEEECCCSSCSH------HHHHHHHHHH
T ss_pred cCCCcccEEEEE-ECCEEEEeeCCCCCHH------HHHHHHHHHH
Confidence 489999999864 45655433 3555544 5666666553
No 431
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=21.19 E-value=76 Score=31.17 Aligned_cols=45 Identities=11% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcCCCCCCcEEEECCCCceeccccccCCCCCCCcchHHHHHHHHHH
Q 003940 187 VDKVYMTYVQALYGGGGWPLSVFLSPDLKPLMGGTYFPPEDKYGRPGFKTILRKVKD 243 (784)
Q Consensus 187 i~~~y~~~~q~~~g~~G~P~~vfl~pdg~pi~~~tY~p~~~~~~~~~f~~~L~~i~~ 243 (784)
+.+......+.+ |+.|+|+++| +|+.+.| +.|.+ .|.++|+.+.+
T Consensus 153 v~~~~~~a~~~~-GV~GtPtfvv---ng~~~~G--~~~~e------~l~~~i~~~~~ 197 (205)
T 3gmf_A 153 LAAETDEAINQY-NVSGTPSFMI---DGILLAG--THDWA------SLRPQILARLN 197 (205)
T ss_dssp HHHHHHHHHHHH-CCCSSSEEEE---TTEECTT--CCSHH------HHHHHHHHHHT
T ss_pred HHHHHHHHHHHc-CCccCCEEEE---CCEEEeC--CCCHH------HHHHHHHHHhh
No 432
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A*
Probab=21.14 E-value=6.6e+02 Score=26.80 Aligned_cols=74 Identities=14% Similarity=-0.053 Sum_probs=50.7
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccCCCcccccCCCCCccccccccCCCCCCCChhHHHHHHHHHH
Q 003940 621 DYAFLISGLLDLYEFGSGTKWLVWAIELQNTQDELFLDREGGGYFNTTGEDPSVLLRVKEDHDGAEPSGNSVSVINLVRL 700 (784)
Q Consensus 621 DyA~li~aLL~LYeaTgd~~yL~~A~~L~~~~~~~F~D~~~Ggyf~t~~~~~~l~~R~k~~~D~a~PS~Nsv~a~~L~rL 700 (784)
|-+..+.+|..+|..+++++|.+.+.+-++.+...-+. +|||---..+. .-.+......| -+++..|.-|
T Consensus 75 dTa~vl~~Larv~~~~~~~~y~~Ai~Rgl~wlL~mQ~~--nGGWpqFdpd~-~~Yl~~IpFnD-------DvtarvLelL 144 (332)
T 1gxm_A 75 ATITEMVFLAEVYKSGGNTKYRDAVRKAANFLVNSQYS--TGALPQFYPLK-GGYSDHATFND-------NGMAYALTVL 144 (332)
T ss_dssp TTHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCT--TSCCBSEESCC-SGGGGSEECGG-------GHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhccCC--CCCccccCCCc-ccccccCCcch-------HHHHHHHHHH
Confidence 45889999999999999999999999999999887653 57653211111 11222233334 5788887777
Q ss_pred HHHh
Q 003940 701 ASIV 704 (784)
Q Consensus 701 ~~lt 704 (784)
..+.
T Consensus 145 ~~~~ 148 (332)
T 1gxm_A 145 DFAA 148 (332)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7774
No 433
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=20.81 E-value=3.4e+02 Score=28.46 Aligned_cols=40 Identities=8% Similarity=0.108 Sum_probs=30.5
Q ss_pred hHHHHHHHhhcCCcEEEEEccc--CChhhhhhhhcccCCHHH
Q 003940 127 GEEAFAEARKRDVPIFLSIGYS--TCHWCHVMEVESFEDEGV 166 (784)
Q Consensus 127 ~~eal~~Ak~e~KpI~l~~~~~--wC~wC~~Me~etf~d~eV 166 (784)
..+..+.||+.|-.|+|+|+++ |+..++......+.+..+
T Consensus 62 ~~~~~~~ak~~Gl~v~ld~hysd~wadP~~q~~p~~W~~~~~ 103 (334)
T 1fob_A 62 NLELAKRVKAAGMSLYLDLHLSDTWADPSDQTTPSGWSTTDL 103 (334)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSSSCCBTTBCBCCTTSCSSCH
T ss_pred HHHHHHHHHHCCCEEEEEeccCCCCCCcccccCccccccCCh
Confidence 3667788999999999999987 888887766555655443
No 434
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase, alpha/alpha barrel, hydrolase; HET: BMA; 1.50A {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Probab=20.67 E-value=1.3e+02 Score=35.87 Aligned_cols=52 Identities=23% Similarity=0.273 Sum_probs=36.8
Q ss_pred chHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCChHHHHHHHHHHHHHHHHhccccCCCeEEEE
Q 003940 544 SWNGLVISSFARASKILKSEAESAMFNFPVVGSDRKEYMEVAESAASFIRRHLYDEQTHRLQHS 607 (784)
Q Consensus 544 sWNal~I~ALa~a~~~~~d~~~~~~~~~~~~~~~~~~yle~A~~~a~~l~~~l~d~~~G~l~~~ 607 (784)
+|-..+...+++.++.+|+... ..+|.+.|.++.+.+.++||+++.|.++..
T Consensus 556 A~ly~al~~lA~lA~~LG~~e~------------A~~y~~~A~~lk~ai~~~fWd~e~G~y~D~ 607 (761)
T 3c68_A 556 SYMYSDNHYLAEMATILGKPEE------------AKRYRQLAQQLADYINTCMFDPTTQFYYDV 607 (761)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHH------------HHHHHHHHHHHHHHHHHHTEETTTTEECCE
T ss_pred HHHHHHHHHHHHHHHHhCChHH------------HHHHHHHHHHHHHHHHHhCcCccCCEEEEE
Confidence 3333345566677777876310 257999999999999999999887766543
No 435
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=20.29 E-value=2.2e+02 Score=25.14 Aligned_cols=54 Identities=13% Similarity=0.188 Sum_probs=39.2
Q ss_pred echHHHHHHhh-----hhHHHHHHHhcccCCCCcCCCCCCCCCCCCCCcceeeccCCchHHHHhcCCCHHHHHHHHHHHH
Q 003940 448 WTSKEVEDILG-----EHAILFKEHYYLKPTGNCDLSRMSDPHNEFKGKNVLIELNDSSASASKLGMPLEKYLNILGECR 522 (784)
Q Consensus 448 Wt~~Ei~~~Lg-----~~~~l~~~~f~l~~~Gn~e~~~~~dp~g~f~g~nvL~~~~~~~~~a~~~g~~~~~l~~~l~~~r 522 (784)
.|.+|++.+.+ +..--++..|.+. |. +..++|+.+|++...+.+.|+.++
T Consensus 5 mT~~eFe~~~~~l~~~~~~~~~A~lyYv~------------------g~-------tQ~eIA~~lGiSR~~VsrlL~~Ar 59 (101)
T 2w7n_A 5 LTESQFQEAIQGLEVGQQTIEIARGVLVD------------------GK-------PQATFATSLGLTRGAVSQAVHRVW 59 (101)
T ss_dssp CCHHHHHHHHTTCCCCHHHHHHHHHHHTT------------------CC-------CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHccCChHHHHHHHHHHHHHc------------------CC-------CHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57888888886 2233344455442 22 236899999999999999999999
Q ss_pred HHHH
Q 003940 523 RKLF 526 (784)
Q Consensus 523 ~kL~ 526 (784)
+.+.
T Consensus 60 ~~~~ 63 (101)
T 2w7n_A 60 AAFE 63 (101)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8875
No 436
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=20.19 E-value=73 Score=30.47 Aligned_cols=35 Identities=20% Similarity=0.082 Sum_probs=22.8
Q ss_pred cCCCCCCcEEEECCCCceec-cccccCCCCCCCcchHHHHHHHHH
Q 003940 199 YGGGGWPLSVFLSPDLKPLM-GGTYFPPEDKYGRPGFKTILRKVK 242 (784)
Q Consensus 199 ~g~~G~P~~vfl~pdg~pi~-~~tY~p~~~~~~~~~f~~~L~~i~ 242 (784)
.|+.|+|++|| +|+.+. ..+..|.+ .|.++|+.+.
T Consensus 148 ~gv~GtPtfvv---ng~~~v~~~Ga~~~e------~~~~~i~~ll 183 (185)
T 3feu_A 148 SGISSVPTFVV---NGKYNVLIGGHDDPK------QIADTIRYLL 183 (185)
T ss_dssp HTCCSSSEEEE---TTTEEECGGGCSSHH------HHHHHHHHHH
T ss_pred cCCCccCEEEE---CCEEEEecCCCCCHH------HHHHHHHHHH
Confidence 38999999997 677543 23344433 5777766553
Done!