Query 003941
Match_columns 784
No_of_seqs 47 out of 49
Neff 2.8
Searched_HMMs 46136
Date Thu Mar 28 14:42:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 98.9 3E-05 6.6E-10 89.3 41.5 76 274-349 374-451 (880)
2 TIGR02169 SMC_prok_A chromosom 98.9 0.00013 2.7E-09 84.9 45.4 34 377-410 291-324 (1164)
3 PF07888 CALCOCO1: Calcium bin 98.8 4.3E-05 9.4E-10 86.4 36.5 240 230-504 159-403 (546)
4 TIGR02168 SMC_prok_B chromosom 98.7 0.00018 3.8E-09 83.1 39.2 12 632-643 1091-1102(1179)
5 TIGR00606 rad50 rad50. This fa 98.7 0.00063 1.4E-08 83.1 44.8 65 276-343 791-862 (1311)
6 KOG0161 Myosin class II heavy 98.7 0.00027 5.8E-09 89.0 41.4 67 531-597 1189-1258(1930)
7 TIGR02169 SMC_prok_A chromosom 98.6 0.00069 1.5E-08 79.0 41.7 27 226-252 168-194 (1164)
8 TIGR00606 rad50 rad50. This fa 98.6 8.8E-05 1.9E-09 90.3 35.5 164 83-270 296-468 (1311)
9 PRK01156 chromosome segregatio 98.6 0.00042 9.1E-09 80.7 39.6 91 311-409 410-505 (895)
10 TIGR02168 SMC_prok_B chromosom 98.6 0.00071 1.5E-08 78.3 40.0 43 108-150 25-68 (1179)
11 COG1196 Smc Chromosome segrega 98.6 0.00098 2.1E-08 80.6 42.2 43 113-155 31-74 (1163)
12 PRK02224 chromosome segregatio 98.5 0.0012 2.7E-08 76.4 40.0 82 426-507 468-558 (880)
13 KOG0161 Myosin class II heavy 98.4 0.0034 7.3E-08 79.6 41.8 159 213-414 1005-1173(1930)
14 PRK03918 chromosome segregatio 98.4 0.013 2.8E-07 67.9 42.5 88 314-410 402-489 (880)
15 PF09726 Macoilin: Transmembra 98.3 0.0011 2.5E-08 77.1 32.9 199 314-587 457-657 (697)
16 PF10174 Cast: RIM-binding pro 98.1 0.034 7.4E-07 65.9 39.4 92 254-346 51-150 (775)
17 PF12128 DUF3584: Protein of u 98.0 0.041 8.8E-07 67.4 37.6 67 68-134 243-309 (1201)
18 COG1196 Smc Chromosome segrega 98.0 0.099 2.2E-06 63.9 41.3 53 201-253 142-197 (1163)
19 PF05701 WEMBL: Weak chloropla 97.9 0.079 1.7E-06 59.9 34.5 145 376-549 277-425 (522)
20 PRK04863 mukB cell division pr 97.9 0.2 4.4E-06 63.2 41.6 79 205-283 256-334 (1486)
21 PF15070 GOLGA2L5: Putative go 97.8 0.092 2E-06 61.0 34.6 295 229-584 5-311 (617)
22 PF07888 CALCOCO1: Calcium bin 97.8 0.11 2.3E-06 59.9 34.5 64 278-346 172-235 (546)
23 KOG4643 Uncharacterized coiled 97.8 0.08 1.7E-06 64.1 34.1 61 465-525 415-482 (1195)
24 PRK03918 chromosome segregatio 97.8 0.14 3.1E-06 59.5 47.0 83 261-343 389-485 (880)
25 KOG4674 Uncharacterized conser 97.8 0.16 3.5E-06 64.8 37.9 278 202-525 993-1286(1822)
26 KOG4674 Uncharacterized conser 97.7 0.061 1.3E-06 68.3 33.0 477 80-630 33-552 (1822)
27 PF10174 Cast: RIM-binding pro 97.7 0.16 3.4E-06 60.6 34.4 110 279-409 289-400 (775)
28 PF12128 DUF3584: Protein of u 97.6 0.34 7.3E-06 59.8 43.9 50 72-125 343-392 (1201)
29 PHA02562 46 endonuclease subun 97.6 0.077 1.7E-06 58.5 29.3 33 382-414 215-247 (562)
30 PF05557 MAD: Mitotic checkpoi 97.5 0.00065 1.4E-08 78.3 11.9 123 279-415 300-427 (722)
31 PF00261 Tropomyosin: Tropomyo 97.5 0.089 1.9E-06 53.6 25.6 64 522-592 174-237 (237)
32 PHA02562 46 endonuclease subun 97.5 0.059 1.3E-06 59.4 25.8 161 310-508 213-373 (562)
33 KOG0994 Extracellular matrix g 97.5 0.59 1.3E-05 57.8 37.2 399 200-625 1205-1649(1758)
34 PRK04863 mukB cell division pr 97.4 0.64 1.4E-05 59.0 36.6 36 500-535 554-590 (1486)
35 PF00038 Filament: Intermediat 97.4 0.21 4.7E-06 51.6 33.2 107 473-592 196-305 (312)
36 PRK11637 AmiB activator; Provi 97.4 0.13 2.7E-06 56.3 26.5 36 375-410 49-84 (428)
37 KOG0971 Microtubule-associated 97.4 0.64 1.4E-05 56.4 33.5 107 226-336 229-351 (1243)
38 KOG0612 Rho-associated, coiled 97.3 0.52 1.1E-05 58.4 33.1 25 278-302 462-486 (1317)
39 PRK01156 chromosome segregatio 97.3 0.6 1.3E-05 55.1 37.5 43 259-301 200-242 (895)
40 KOG4643 Uncharacterized coiled 97.3 0.77 1.7E-05 56.2 43.0 50 66-118 172-224 (1195)
41 PF09755 DUF2046: Uncharacteri 97.3 0.013 2.8E-07 63.2 17.6 221 215-458 35-286 (310)
42 PF10375 GRAB: GRIP-related Ar 97.2 0.00016 3.4E-09 49.5 1.7 18 596-613 2-19 (19)
43 KOG0612 Rho-associated, coiled 97.2 0.91 2E-05 56.5 33.6 36 374-409 582-617 (1317)
44 KOG0250 DNA repair protein RAD 97.2 1 2.2E-05 55.5 33.9 41 568-612 502-543 (1074)
45 KOG0977 Nuclear envelope prote 97.1 0.87 1.9E-05 52.8 29.8 102 220-339 34-135 (546)
46 KOG4673 Transcription factor T 97.1 1.1 2.5E-05 53.1 32.7 261 370-638 399-706 (961)
47 KOG0996 Structural maintenance 97.0 0.62 1.3E-05 57.6 29.7 218 311-566 779-1012(1293)
48 PRK11637 AmiB activator; Provi 97.0 0.14 3.1E-06 55.9 22.0 83 220-302 39-121 (428)
49 KOG0964 Structural maintenance 97.0 1.7 3.6E-05 53.4 33.2 72 269-345 215-286 (1200)
50 KOG4673 Transcription factor T 96.9 1.5 3.1E-05 52.3 34.4 100 310-452 523-624 (961)
51 PF00038 Filament: Intermediat 96.9 0.66 1.4E-05 48.0 30.2 39 375-413 49-87 (312)
52 PF05701 WEMBL: Weak chloropla 96.9 1.3 2.7E-05 50.5 38.5 25 231-255 58-82 (522)
53 COG0419 SbcC ATPase involved i 96.7 2.2 4.7E-05 51.3 49.1 22 72-93 282-303 (908)
54 KOG0976 Rho/Rac1-interacting s 96.7 2.3 5.1E-05 51.4 33.5 86 225-321 103-191 (1265)
55 PF00261 Tropomyosin: Tropomyo 96.6 1 2.2E-05 46.1 25.3 203 376-592 11-223 (237)
56 PF05557 MAD: Mitotic checkpoi 96.6 0.0027 5.9E-08 73.3 5.3 166 282-451 248-431 (722)
57 KOG0933 Structural maintenance 96.5 3.3 7.2E-05 51.1 33.5 97 243-343 678-774 (1174)
58 KOG0977 Nuclear envelope prote 96.5 0.85 1.9E-05 52.8 24.1 120 309-452 45-174 (546)
59 KOG0976 Rho/Rac1-interacting s 96.5 3 6.5E-05 50.6 28.6 65 278-342 93-159 (1265)
60 KOG0978 E3 ubiquitin ligase in 96.4 3.3 7.1E-05 49.4 31.4 45 378-422 376-421 (698)
61 KOG0250 DNA repair protein RAD 96.4 3.9 8.6E-05 50.6 30.0 38 309-346 220-257 (1074)
62 PF13514 AAA_27: AAA domain 96.3 1.3 2.9E-05 54.1 26.1 288 275-600 148-444 (1111)
63 PF09726 Macoilin: Transmembra 96.3 1.3 2.9E-05 52.4 25.0 224 222-486 419-657 (697)
64 PLN03188 kinesin-12 family pro 96.1 6.2 0.00013 49.8 33.8 117 204-323 868-999 (1320)
65 PF01576 Myosin_tail_1: Myosin 96.1 0.0015 3.3E-08 77.3 0.0 40 374-414 469-508 (859)
66 KOG1029 Endocytic adaptor prot 96.1 0.81 1.7E-05 54.9 21.5 48 407-458 379-426 (1118)
67 KOG0996 Structural maintenance 96.0 6.6 0.00014 49.3 35.3 88 256-343 345-438 (1293)
68 KOG1029 Endocytic adaptor prot 96.0 3.3 7.2E-05 50.1 25.9 87 315-415 435-521 (1118)
69 KOG0963 Transcription factor/C 95.9 5.1 0.00011 47.3 30.8 64 277-340 15-89 (629)
70 COG1579 Zn-ribbon protein, pos 95.9 2.4 5.3E-05 44.7 21.9 34 381-414 18-51 (239)
71 PF01576 Myosin_tail_1: Myosin 95.8 0.0023 4.9E-08 75.9 0.0 37 309-345 137-173 (859)
72 TIGR02680 conserved hypothetic 95.8 2.6 5.6E-05 53.1 25.9 73 381-453 743-820 (1353)
73 KOG0018 Structural maintenance 95.8 7.6 0.00017 48.3 29.9 43 113-157 32-75 (1141)
74 PF05622 HOOK: HOOK protein; 95.8 0.0024 5.2E-08 73.7 0.0 124 217-346 235-361 (713)
75 KOG0980 Actin-binding protein 95.8 6.5 0.00014 48.1 27.3 218 374-602 327-579 (980)
76 PRK09039 hypothetical protein; 95.8 0.7 1.5E-05 50.1 18.3 55 278-332 47-103 (343)
77 KOG0995 Centromere-associated 95.7 5.9 0.00013 46.5 32.9 101 318-450 260-363 (581)
78 KOG0964 Structural maintenance 95.7 6.1 0.00013 48.9 26.9 138 375-541 856-1004(1200)
79 COG4372 Uncharacterized protei 95.7 5.2 0.00011 45.4 24.9 132 374-509 96-233 (499)
80 PF01465 GRIP: GRIP domain; I 95.6 0.025 5.4E-07 45.5 5.2 41 599-639 2-45 (46)
81 PF09787 Golgin_A5: Golgin sub 95.6 2.6 5.6E-05 47.8 22.5 57 496-552 200-256 (511)
82 KOG0933 Structural maintenance 95.5 9.3 0.0002 47.5 30.5 70 435-511 764-833 (1174)
83 PF15066 CAGE1: Cancer-associa 95.5 3.6 7.9E-05 47.2 23.1 150 251-452 309-458 (527)
84 PF04849 HAP1_N: HAP1 N-termin 95.5 3.4 7.4E-05 45.1 21.9 137 382-539 162-298 (306)
85 COG4942 Membrane-bound metallo 95.4 6.2 0.00013 44.8 27.8 87 279-408 40-126 (420)
86 COG1340 Uncharacterized archae 95.4 2.8 6.1E-05 45.6 21.0 216 277-509 23-244 (294)
87 KOG0962 DNA repair protein RAD 95.4 12 0.00025 47.7 36.9 216 381-597 879-1129(1294)
88 PF15070 GOLGA2L5: Putative go 95.2 8.7 0.00019 45.3 32.1 41 310-350 29-69 (617)
89 KOG0994 Extracellular matrix g 95.0 5.9 0.00013 49.8 23.8 48 465-512 1549-1596(1758)
90 PF05622 HOOK: HOOK protein; 94.9 0.0069 1.5E-07 70.1 0.0 125 382-525 293-420 (713)
91 KOG0946 ER-Golgi vesicle-tethe 94.7 14 0.00031 45.2 26.4 37 219-255 630-666 (970)
92 TIGR02680 conserved hypothetic 94.6 19 0.00041 45.9 30.8 33 312-344 744-776 (1353)
93 KOG0946 ER-Golgi vesicle-tethe 94.5 13 0.00029 45.3 24.9 102 461-579 781-882 (970)
94 PF09730 BicD: Microtubule-ass 94.5 15 0.00033 44.3 36.5 91 492-582 372-463 (717)
95 PRK09039 hypothetical protein; 94.4 7 0.00015 42.6 21.0 28 513-540 140-167 (343)
96 PF05667 DUF812: Protein of un 94.4 14 0.0003 43.5 25.3 205 284-510 321-536 (594)
97 PLN02939 transferase, transfer 94.4 19 0.0004 44.9 27.4 200 310-538 128-345 (977)
98 TIGR01005 eps_transp_fam exopo 94.3 13 0.00029 43.6 24.1 139 315-485 192-336 (754)
99 PF05483 SCP-1: Synaptonemal c 94.2 17 0.00037 43.7 34.5 312 245-587 359-689 (786)
100 PF09787 Golgin_A5: Golgin sub 94.0 14 0.0003 42.2 28.8 101 226-330 121-241 (511)
101 KOG0971 Microtubule-associated 94.0 21 0.00046 44.3 32.8 65 539-606 459-527 (1243)
102 PF05010 TACC: Transforming ac 93.9 9.1 0.0002 39.7 22.2 150 311-488 10-166 (207)
103 PF09789 DUF2353: Uncharacteri 93.9 9.8 0.00021 41.9 20.6 158 286-484 4-180 (319)
104 PRK04778 septation ring format 93.8 16 0.00035 42.1 32.8 30 270-299 249-278 (569)
105 KOG0980 Actin-binding protein 93.8 23 0.00049 43.8 29.0 32 308-339 408-439 (980)
106 TIGR03007 pepcterm_ChnLen poly 93.7 14 0.0003 41.1 22.0 32 377-408 158-189 (498)
107 TIGR03007 pepcterm_ChnLen poly 93.6 9.1 0.0002 42.4 20.4 176 215-411 155-348 (498)
108 KOG0999 Microtubule-associated 93.4 21 0.00045 42.3 39.4 70 70-141 7-85 (772)
109 PF08317 Spc7: Spc7 kinetochor 93.3 14 0.0003 39.8 21.0 40 524-563 230-269 (325)
110 PF06160 EzrA: Septation ring 93.3 19 0.00042 41.6 40.5 157 467-623 346-517 (560)
111 COG1579 Zn-ribbon protein, pos 93.0 11 0.00024 40.0 18.8 25 457-481 58-82 (239)
112 PF05911 DUF869: Plant protein 92.8 16 0.00034 44.4 21.8 167 395-582 18-206 (769)
113 PRK11281 hypothetical protein; 92.8 28 0.00061 43.9 24.5 33 377-409 77-109 (1113)
114 PF13514 AAA_27: AAA domain 92.7 33 0.00072 42.5 34.0 16 629-644 1024-1039(1111)
115 TIGR03185 DNA_S_dndD DNA sulfu 92.5 26 0.00056 40.9 31.7 14 631-644 552-565 (650)
116 PF04849 HAP1_N: HAP1 N-termin 92.4 20 0.00044 39.4 22.8 139 311-498 161-302 (306)
117 TIGR01843 type_I_hlyD type I s 92.3 17 0.00037 38.5 23.2 29 315-343 128-156 (423)
118 PF08317 Spc7: Spc7 kinetochor 92.3 7 0.00015 42.0 16.6 154 225-444 72-227 (325)
119 PF09789 DUF2353: Uncharacteri 92.3 8.6 0.00019 42.3 17.4 135 310-451 72-214 (319)
120 KOG0999 Microtubule-associated 92.2 31 0.00067 41.0 23.8 152 374-531 44-215 (772)
121 COG0419 SbcC ATPase involved i 92.0 36 0.00077 41.3 41.5 24 382-405 419-442 (908)
122 smart00755 Grip golgin-97, Ran 91.9 0.35 7.6E-06 39.4 4.9 40 600-639 2-43 (46)
123 PF05667 DUF812: Protein of un 91.7 33 0.00072 40.5 27.0 39 376-414 324-362 (594)
124 KOG2129 Uncharacterized conser 91.7 8.3 0.00018 44.1 16.8 57 396-459 255-311 (552)
125 KOG4302 Microtubule-associated 91.6 37 0.00081 40.8 40.2 171 233-414 66-260 (660)
126 KOG4593 Mitotic checkpoint pro 91.6 39 0.00083 40.9 30.4 42 399-448 280-321 (716)
127 TIGR01005 eps_transp_fam exopo 91.4 35 0.00076 40.2 22.5 29 381-409 195-223 (754)
128 KOG0244 Kinesin-like protein [ 91.2 47 0.001 41.3 25.3 75 225-308 327-401 (913)
129 PRK11281 hypothetical protein; 91.1 52 0.0011 41.6 31.8 78 314-406 77-154 (1113)
130 KOG0978 E3 ubiquitin ligase in 91.1 42 0.00092 40.6 34.8 81 457-540 381-484 (698)
131 PRK12704 phosphodiesterase; Pr 90.8 37 0.0008 39.4 21.5 15 577-591 189-203 (520)
132 PF06160 EzrA: Septation ring 90.7 38 0.00082 39.3 31.3 79 469-552 411-493 (560)
133 KOG0240 Kinesin (SMY1 subfamil 90.4 23 0.0005 41.9 19.2 49 72-120 112-162 (607)
134 PF08614 ATG16: Autophagy prot 90.3 4.3 9.3E-05 40.5 11.9 104 310-452 67-170 (194)
135 KOG2991 Splicing regulator [RN 90.0 5.7 0.00012 43.1 13.0 143 264-414 165-312 (330)
136 PF15254 CCDC14: Coiled-coil d 89.9 43 0.00093 41.1 21.1 82 421-509 457-538 (861)
137 TIGR01843 type_I_hlyD type I s 89.8 30 0.00065 36.7 22.6 22 387-408 81-102 (423)
138 TIGR03319 YmdA_YtgF conserved 89.6 46 0.001 38.5 21.8 16 577-592 183-198 (514)
139 PF06548 Kinesin-related: Kine 89.4 48 0.001 38.5 34.2 107 217-327 118-239 (488)
140 TIGR03017 EpsF chain length de 89.4 36 0.00079 37.1 24.1 34 314-347 168-201 (444)
141 KOG4603 TBP-1 interacting prot 89.4 11 0.00024 38.9 14.0 87 453-547 67-154 (201)
142 KOG4593 Mitotic checkpoint pro 89.3 59 0.0013 39.4 27.2 73 394-470 98-170 (716)
143 PF12325 TMF_TATA_bd: TATA ele 89.2 12 0.00027 35.9 13.4 90 487-586 24-116 (120)
144 PF04156 IncA: IncA protein; 89.1 22 0.00047 34.7 15.4 29 386-414 80-108 (191)
145 PF13870 DUF4201: Domain of un 88.9 25 0.00054 34.5 17.5 134 226-412 4-137 (177)
146 PF15619 Lebercilin: Ciliary p 88.7 31 0.00067 35.3 22.4 172 382-584 14-189 (194)
147 KOG1853 LIS1-interacting prote 88.3 27 0.00059 38.1 16.5 33 377-409 49-81 (333)
148 TIGR03185 DNA_S_dndD DNA sulfu 88.2 59 0.0013 38.1 34.7 6 29-34 32-37 (650)
149 PLN02939 transferase, transfer 88.2 81 0.0018 39.6 25.5 293 259-610 166-472 (977)
150 PRK10929 putative mechanosensi 88.2 86 0.0019 39.9 32.5 68 313-399 61-128 (1109)
151 COG4942 Membrane-bound metallo 88.1 55 0.0012 37.6 28.5 36 380-415 73-108 (420)
152 PF08826 DMPK_coil: DMPK coile 88.1 4.6 9.9E-05 34.9 8.8 43 497-542 1-43 (61)
153 PF13851 GAS: Growth-arrest sp 88.0 26 0.00056 35.8 15.7 67 487-553 63-129 (201)
154 PF10498 IFT57: Intra-flagella 87.3 14 0.00031 40.9 14.4 84 466-563 235-319 (359)
155 PRK10246 exonuclease subunit S 87.3 88 0.0019 39.0 38.3 49 285-339 597-645 (1047)
156 PF10168 Nup88: Nuclear pore c 86.7 39 0.00084 40.8 18.4 158 221-410 558-715 (717)
157 smart00787 Spc7 Spc7 kinetocho 86.5 55 0.0012 35.8 18.3 42 523-564 224-265 (312)
158 KOG0243 Kinesin-like protein [ 86.4 84 0.0018 39.7 21.2 157 373-540 369-548 (1041)
159 TIGR03017 EpsF chain length de 86.0 58 0.0013 35.6 22.4 43 466-508 255-297 (444)
160 PRK04778 septation ring format 85.6 78 0.0017 36.7 38.9 23 75-97 26-48 (569)
161 PF15619 Lebercilin: Ciliary p 85.3 47 0.001 34.1 24.4 49 283-343 4-52 (194)
162 PLN03188 kinesin-12 family pro 85.2 1.3E+02 0.0028 39.0 28.9 63 516-582 1172-1234(1320)
163 PF03999 MAP65_ASE1: Microtubu 84.8 3.9 8.4E-05 47.5 9.0 135 274-413 88-240 (619)
164 PF07989 Microtub_assoc: Micro 84.8 8.4 0.00018 34.2 9.0 69 312-414 2-70 (75)
165 PF05911 DUF869: Plant protein 84.5 1.1E+02 0.0024 37.6 20.8 73 375-458 626-698 (769)
166 PF10473 CENP-F_leu_zip: Leuci 84.4 45 0.00098 33.0 17.8 25 319-343 12-36 (140)
167 KOG0249 LAR-interacting protei 84.1 78 0.0017 38.8 18.8 69 460-528 157-234 (916)
168 PF09755 DUF2046: Uncharacteri 83.6 78 0.0017 35.1 28.7 36 311-346 28-63 (310)
169 PF04111 APG6: Autophagy prote 83.5 10 0.00022 41.0 10.9 77 310-415 9-85 (314)
170 PF08614 ATG16: Autophagy prot 83.5 9.4 0.0002 38.1 9.9 75 374-452 68-142 (194)
171 PF04156 IncA: IncA protein; 83.2 48 0.001 32.4 14.5 32 312-343 83-114 (191)
172 PF09730 BicD: Microtubule-ass 82.7 1.3E+02 0.0027 36.9 42.4 89 435-530 547-660 (717)
173 KOG0244 Kinesin-like protein [ 82.4 1.4E+02 0.0031 37.3 20.5 56 285-340 331-386 (913)
174 PRK00106 hypothetical protein; 82.3 1.1E+02 0.0024 36.0 23.7 16 577-592 204-219 (535)
175 KOG0804 Cytoplasmic Zn-finger 82.3 19 0.00042 41.5 12.7 30 486-515 428-457 (493)
176 PF07111 HCR: Alpha helical co 82.2 1.3E+02 0.0029 36.7 36.7 32 383-415 474-505 (739)
177 PF12777 MT: Microtubule-bindi 82.1 82 0.0018 34.3 19.7 63 516-578 234-296 (344)
178 PF12718 Tropomyosin_1: Tropom 81.8 54 0.0012 32.0 19.2 8 556-563 112-119 (143)
179 PF11559 ADIP: Afadin- and alp 81.4 51 0.0011 31.5 13.7 42 501-542 43-84 (151)
180 COG2433 Uncharacterized conser 81.0 5.7 0.00012 46.9 8.3 80 310-407 429-508 (652)
181 PF04111 APG6: Autophagy prote 80.9 2.9 6.3E-05 45.0 5.7 86 261-346 48-135 (314)
182 TIGR00634 recN DNA repair prot 80.9 1.1E+02 0.0025 35.2 22.5 34 381-414 169-202 (563)
183 PF10168 Nup88: Nuclear pore c 80.4 82 0.0018 38.1 17.6 59 484-542 601-664 (717)
184 PF15066 CAGE1: Cancer-associa 80.3 1.3E+02 0.0028 35.4 21.3 150 425-591 330-485 (527)
185 PF07926 TPR_MLP1_2: TPR/MLP1/ 80.3 23 0.00051 33.6 10.8 52 219-270 15-66 (132)
186 PF05010 TACC: Transforming ac 80.3 80 0.0017 33.0 25.4 29 429-457 33-61 (207)
187 PF06818 Fez1: Fez1; InterPro 80.0 83 0.0018 33.0 19.2 33 382-414 12-44 (202)
188 PLN03229 acetyl-coenzyme A car 79.7 1.2E+02 0.0026 37.3 18.5 68 278-346 463-543 (762)
189 KOG1003 Actin filament-coating 79.6 87 0.0019 33.1 24.8 198 380-591 4-204 (205)
190 KOG2129 Uncharacterized conser 79.5 1.3E+02 0.0029 35.0 22.6 84 434-525 180-275 (552)
191 PF10146 zf-C4H2: Zinc finger- 79.2 59 0.0013 34.3 14.2 81 496-593 28-109 (230)
192 PRK14474 F0F1 ATP synthase sub 78.2 96 0.0021 32.7 17.1 36 623-658 152-187 (250)
193 KOG4809 Rab6 GTPase-interactin 77.9 1.6E+02 0.0035 35.3 33.5 226 254-505 175-406 (654)
194 KOG0240 Kinesin (SMY1 subfamil 77.9 1.6E+02 0.0036 35.3 22.3 14 618-631 533-546 (607)
195 KOG4460 Nuclear pore complex, 77.8 1E+02 0.0022 36.9 16.7 91 480-593 634-725 (741)
196 COG5293 Predicted ATPase [Gene 77.8 55 0.0012 38.3 14.4 68 434-527 336-403 (591)
197 KOG0995 Centromere-associated 77.7 1.6E+02 0.0036 35.2 39.1 167 258-454 310-481 (581)
198 KOG4403 Cell surface glycoprot 77.6 70 0.0015 37.2 15.1 38 532-569 362-407 (575)
199 KOG4403 Cell surface glycoprot 76.9 1.6E+02 0.0034 34.6 19.1 73 467-541 254-326 (575)
200 KOG1899 LAR transmembrane tyro 76.5 26 0.00056 42.1 11.7 46 258-303 106-151 (861)
201 PF00769 ERM: Ezrin/radixin/mo 76.4 96 0.0021 32.7 14.9 34 376-409 1-34 (246)
202 PF06456 Arfaptin: Arfaptin-li 76.1 1.1E+02 0.0023 32.2 15.5 186 283-509 32-225 (229)
203 PF03962 Mnd1: Mnd1 family; I 76.0 48 0.001 33.6 12.2 39 308-346 60-98 (188)
204 PRK12705 hypothetical protein; 75.8 1.7E+02 0.0037 34.4 18.6 15 577-591 177-191 (508)
205 PRK10246 exonuclease subunit S 75.5 2.2E+02 0.0049 35.6 40.1 27 381-407 531-557 (1047)
206 COG3206 GumC Uncharacterized p 75.4 1.4E+02 0.0031 33.3 24.1 72 379-450 238-309 (458)
207 PF07106 TBPIP: Tat binding pr 75.1 22 0.00048 34.6 9.3 37 310-346 72-108 (169)
208 PF12718 Tropomyosin_1: Tropom 74.9 87 0.0019 30.6 20.0 60 382-452 2-61 (143)
209 KOG4360 Uncharacterized coiled 74.8 1.9E+02 0.0041 34.5 20.0 37 256-292 90-126 (596)
210 KOG0972 Huntingtin interacting 74.8 58 0.0013 36.3 13.1 108 472-580 248-356 (384)
211 PF07798 DUF1640: Protein of u 74.4 60 0.0013 32.2 12.2 22 464-485 137-158 (177)
212 KOG0243 Kinesin-like protein [ 74.4 2.6E+02 0.0056 35.8 25.6 63 228-290 448-510 (1041)
213 PF14662 CCDC155: Coiled-coil 74.3 1.2E+02 0.0026 31.9 22.3 139 389-563 10-148 (193)
214 PF13851 GAS: Growth-arrest sp 74.1 1.1E+02 0.0024 31.4 19.0 48 557-604 105-152 (201)
215 PF13870 DUF4201: Domain of un 73.3 98 0.0021 30.4 21.1 28 562-589 148-175 (177)
216 KOG1962 B-cell receptor-associ 73.2 26 0.00056 37.0 9.7 58 526-583 153-210 (216)
217 PF03962 Mnd1: Mnd1 family; I 73.0 66 0.0014 32.7 12.3 38 371-413 58-95 (188)
218 KOG4302 Microtubule-associated 72.9 2.3E+02 0.005 34.5 23.5 108 279-407 23-130 (660)
219 PF15290 Syntaphilin: Golgi-lo 72.6 96 0.0021 34.3 14.0 89 381-512 69-157 (305)
220 PF10186 Atg14: UV radiation r 72.3 1.2E+02 0.0026 30.9 17.4 11 621-631 149-159 (302)
221 PF15254 CCDC14: Coiled-coil d 72.1 2.6E+02 0.0057 34.8 26.5 236 311-611 338-578 (861)
222 COG2433 Uncharacterized conser 72.1 40 0.00087 40.3 11.9 52 493-544 450-501 (652)
223 PF06428 Sec2p: GDP/GTP exchan 71.7 9.9 0.00021 35.5 5.7 80 504-583 2-82 (100)
224 COG1340 Uncharacterized archae 71.4 1.7E+02 0.0037 32.4 29.1 53 278-345 3-55 (294)
225 PF09738 DUF2051: Double stran 71.2 85 0.0018 34.5 13.4 191 207-405 85-301 (302)
226 PF11559 ADIP: Afadin- and alp 70.2 1E+02 0.0022 29.4 14.5 38 545-582 112-149 (151)
227 PF07106 TBPIP: Tat binding pr 70.0 22 0.00048 34.6 8.0 71 460-538 67-137 (169)
228 PRK10698 phage shock protein P 69.8 1.4E+02 0.0031 31.0 20.2 113 438-559 36-148 (222)
229 PF07798 DUF1640: Protein of u 69.6 1.2E+02 0.0027 30.1 15.5 26 429-454 76-101 (177)
230 KOG0963 Transcription factor/C 69.5 2.6E+02 0.0057 33.8 37.0 59 208-268 20-78 (629)
231 KOG0249 LAR-interacting protei 69.3 2.9E+02 0.0064 34.3 28.7 51 480-530 207-257 (916)
232 PF06818 Fez1: Fez1; InterPro 68.7 1.6E+02 0.0035 31.0 15.1 89 440-539 10-102 (202)
233 PRK14011 prefoldin subunit alp 68.6 1.1E+02 0.0024 30.3 12.4 33 492-527 2-34 (144)
234 PF12325 TMF_TATA_bd: TATA ele 68.2 1.2E+02 0.0026 29.3 14.0 31 311-341 17-47 (120)
235 PF09728 Taxilin: Myosin-like 68.2 1.9E+02 0.0041 31.6 32.8 75 311-412 72-146 (309)
236 PF06705 SF-assemblin: SF-asse 68.1 1.6E+02 0.0034 30.6 23.9 75 435-509 36-115 (247)
237 KOG0239 Kinesin (KAR3 subfamil 67.6 84 0.0018 37.8 13.5 43 224-266 178-220 (670)
238 PF00769 ERM: Ezrin/radixin/mo 67.4 1.7E+02 0.0037 30.9 15.2 46 544-589 74-126 (246)
239 PF14197 Cep57_CLD_2: Centroso 67.2 53 0.0012 28.9 8.9 64 514-584 2-65 (69)
240 PF10267 Tmemb_cc2: Predicted 67.1 1.8E+02 0.004 33.2 15.3 34 376-409 208-241 (395)
241 PF10234 Cluap1: Clusterin-ass 66.0 48 0.001 35.9 10.2 59 375-433 178-236 (267)
242 KOG4572 Predicted DNA-binding 65.5 3.7E+02 0.008 34.1 23.4 128 268-414 948-1088(1424)
243 PF13166 AAA_13: AAA domain 65.4 2.7E+02 0.0059 32.5 22.2 191 276-498 279-471 (712)
244 PF15294 Leu_zip: Leucine zipp 65.2 1.6E+02 0.0034 32.4 13.8 136 271-432 27-170 (278)
245 COG1382 GimC Prefoldin, chaper 65.2 40 0.00087 32.8 8.5 95 312-412 15-109 (119)
246 PRK10884 SH3 domain-containing 64.9 42 0.00092 34.7 9.2 24 314-337 90-113 (206)
247 PF10186 Atg14: UV radiation r 64.8 1.7E+02 0.0037 29.9 17.3 29 561-589 128-156 (302)
248 PRK10884 SH3 domain-containing 64.0 77 0.0017 32.9 10.8 56 382-444 95-150 (206)
249 smart00787 Spc7 Spc7 kinetocho 63.2 2.4E+02 0.0052 31.1 17.9 33 371-403 61-93 (312)
250 KOG1899 LAR transmembrane tyro 63.1 3E+02 0.0064 33.8 16.3 100 322-451 130-235 (861)
251 PF13747 DUF4164: Domain of un 63.0 1.2E+02 0.0027 27.7 10.8 48 494-541 16-63 (89)
252 COG5185 HEC1 Protein involved 62.8 3.3E+02 0.0071 32.5 28.9 240 211-482 265-543 (622)
253 TIGR01010 BexC_CtrB_KpsE polys 62.5 2.3E+02 0.005 30.6 15.9 64 465-537 242-305 (362)
254 PF07445 priB_priC: Primosomal 62.2 1.8E+02 0.0039 29.3 13.3 114 373-490 44-163 (173)
255 PF08581 Tup_N: Tup N-terminal 61.8 1.1E+02 0.0023 27.8 10.0 34 309-342 3-36 (79)
256 PF14662 CCDC155: Coiled-coil 61.6 2.2E+02 0.0047 30.0 20.4 33 377-409 92-124 (193)
257 PF15456 Uds1: Up-regulated Du 61.6 1.2E+02 0.0026 29.4 11.0 31 382-412 83-113 (124)
258 TIGR00634 recN DNA repair prot 60.0 3.3E+02 0.0071 31.6 21.4 30 382-411 177-206 (563)
259 PRK06975 bifunctional uroporph 59.8 2.9E+02 0.0063 33.1 15.9 93 483-593 385-480 (656)
260 TIGR01069 mutS2 MutS2 family p 59.5 1.7E+02 0.0037 35.7 14.2 30 103-135 125-154 (771)
261 KOG0979 Structural maintenance 59.2 5E+02 0.011 33.4 28.3 63 276-343 635-700 (1072)
262 KOG4360 Uncharacterized coiled 58.6 3.9E+02 0.0085 32.1 18.7 139 382-541 161-299 (596)
263 TIGR02977 phageshock_pspA phag 58.4 2.2E+02 0.0048 29.2 24.7 112 438-558 36-147 (219)
264 PF04129 Vps52: Vps52 / Sac2 f 57.9 3.5E+02 0.0076 31.3 17.3 150 472-632 14-202 (508)
265 TIGR01000 bacteriocin_acc bact 57.8 3.2E+02 0.0069 30.7 22.2 36 268-303 88-123 (457)
266 PF10473 CENP-F_leu_zip: Leuci 57.7 2.1E+02 0.0045 28.5 16.8 63 514-590 70-132 (140)
267 PF02841 GBP_C: Guanylate-bind 57.4 1.8E+02 0.004 30.9 12.6 24 386-409 203-226 (297)
268 KOG1853 LIS1-interacting prote 57.0 3.1E+02 0.0068 30.4 20.0 81 504-591 88-171 (333)
269 PF06657 Cep57_MT_bd: Centroso 56.8 63 0.0014 29.0 7.7 36 311-346 11-46 (79)
270 PF08172 CASP_C: CASP C termin 56.7 93 0.002 33.2 10.2 34 313-346 2-35 (248)
271 PF01920 Prefoldin_2: Prefoldi 56.4 55 0.0012 28.7 7.3 35 312-346 7-41 (106)
272 PF15035 Rootletin: Ciliary ro 55.8 2E+02 0.0043 29.5 11.9 84 251-345 90-173 (182)
273 COG5185 HEC1 Protein involved 55.7 4.3E+02 0.0093 31.6 27.7 102 223-343 259-363 (622)
274 PF12126 DUF3583: Protein of u 55.6 3.3E+02 0.0071 30.6 14.1 71 544-614 67-152 (324)
275 TIGR01000 bacteriocin_acc bact 55.3 3.5E+02 0.0075 30.4 24.5 13 685-697 356-368 (457)
276 PF12795 MscS_porin: Mechanose 55.3 2.6E+02 0.0056 28.9 23.0 173 387-572 38-212 (240)
277 PF09731 Mitofilin: Mitochondr 54.9 3.9E+02 0.0084 30.9 24.7 38 306-343 247-285 (582)
278 PF04740 LXG: LXG domain of WX 54.5 2.2E+02 0.0049 28.0 18.4 158 312-490 5-163 (204)
279 KOG1574 Predicted cell growth/ 54.1 3.6E+02 0.0079 30.9 14.5 78 466-548 227-305 (375)
280 PF10146 zf-C4H2: Zinc finger- 53.6 1.4E+02 0.003 31.7 10.8 67 236-302 12-78 (230)
281 PF14389 Lzipper-MIP1: Leucine 53.2 1.6E+02 0.0034 26.9 9.7 38 309-346 7-44 (88)
282 PF10224 DUF2205: Predicted co 53.2 89 0.0019 28.6 8.1 62 270-336 1-63 (80)
283 PF14197 Cep57_CLD_2: Centroso 52.9 1.3E+02 0.0028 26.6 8.8 29 315-343 3-31 (69)
284 PRK09343 prefoldin subunit bet 52.9 2.1E+02 0.0046 27.2 11.2 102 222-346 5-114 (121)
285 PRK10698 phage shock protein P 52.5 2.7E+02 0.0059 29.0 12.6 21 467-487 33-53 (222)
286 PF10267 Tmemb_cc2: Predicted 52.4 2.6E+02 0.0057 32.0 13.4 47 396-446 271-318 (395)
287 cd00632 Prefoldin_beta Prefold 52.4 91 0.002 28.4 8.2 91 311-412 7-102 (105)
288 COG4372 Uncharacterized protei 52.1 4.5E+02 0.0097 30.8 25.7 35 375-409 76-117 (499)
289 PRK00409 recombination and DNA 51.6 2.8E+02 0.0061 33.9 14.3 21 101-121 128-148 (782)
290 PRK10869 recombination and rep 51.5 4.6E+02 0.01 30.7 22.6 31 382-412 166-196 (553)
291 PF11932 DUF3450: Protein of u 50.8 1.7E+02 0.0037 30.4 10.9 109 214-326 42-162 (251)
292 PF10498 IFT57: Intra-flagella 50.3 1.4E+02 0.0031 33.4 10.8 63 275-337 292-355 (359)
293 PF08826 DMPK_coil: DMPK coile 50.3 52 0.0011 28.6 5.9 47 223-269 3-52 (61)
294 KOG4657 Uncharacterized conser 50.0 3.7E+02 0.0081 29.2 15.0 34 476-509 41-74 (246)
295 PF10481 CENP-F_N: Cenp-F N-te 49.8 4.1E+02 0.0089 29.7 13.9 40 552-591 95-134 (307)
296 PF12072 DUF3552: Domain of un 49.4 3E+02 0.0065 28.0 22.2 14 577-590 185-198 (201)
297 PRK03947 prefoldin subunit alp 49.4 1.5E+02 0.0033 28.0 9.5 34 312-345 15-48 (140)
298 PF05384 DegS: Sensor protein 49.3 3E+02 0.0065 27.9 17.5 41 375-415 29-69 (159)
299 KOG0239 Kinesin (KAR3 subfamil 49.0 4.5E+02 0.0097 32.0 15.2 71 519-590 243-313 (670)
300 PF05816 TelA: Toxic anion res 48.9 3.9E+02 0.0085 29.2 31.1 155 427-588 170-331 (333)
301 PF15294 Leu_zip: Leucine zipp 48.1 4.2E+02 0.0091 29.3 15.6 142 425-582 131-276 (278)
302 PF13747 DUF4164: Domain of un 47.9 87 0.0019 28.6 7.3 43 562-605 35-77 (89)
303 PF10481 CENP-F_N: Cenp-F N-te 47.9 4.4E+02 0.0096 29.5 16.2 107 375-489 20-126 (307)
304 TIGR01069 mutS2 MutS2 family p 47.6 2.6E+02 0.0057 34.1 13.2 42 70-111 221-263 (771)
305 KOG3990 Uncharacterized conser 47.3 59 0.0013 35.6 7.0 44 466-510 226-269 (305)
306 cd00584 Prefoldin_alpha Prefol 46.6 1.4E+02 0.0031 27.7 8.7 101 311-413 7-120 (129)
307 PF09304 Cortex-I_coil: Cortex 46.2 1.7E+02 0.0036 28.4 9.1 23 487-509 6-32 (107)
308 PRK14154 heat shock protein Gr 45.8 2.6E+02 0.0056 29.5 11.2 72 371-451 50-121 (208)
309 PF12777 MT: Microtubule-bindi 45.5 4E+02 0.0087 29.1 13.1 43 469-511 218-260 (344)
310 cd00890 Prefoldin Prefoldin is 45.3 1.8E+02 0.0039 26.5 9.0 36 311-346 7-42 (129)
311 KOG4807 F-actin binding protei 45.2 5.7E+02 0.012 30.0 26.0 69 276-344 244-325 (593)
312 PF13094 CENP-Q: CENP-Q, a CEN 44.9 1.2E+02 0.0027 29.3 8.3 76 529-604 32-107 (160)
313 PF08172 CASP_C: CASP C termin 44.7 1.8E+02 0.004 31.0 10.2 94 376-480 2-122 (248)
314 TIGR02338 gimC_beta prefoldin, 44.5 1.4E+02 0.0031 27.5 8.3 36 311-346 11-46 (110)
315 KOG4809 Rab6 GTPase-interactin 44.4 6.6E+02 0.014 30.5 25.5 95 311-431 367-468 (654)
316 PRK09343 prefoldin subunit bet 44.4 1.6E+02 0.0034 28.0 8.7 33 312-344 16-48 (121)
317 PRK02292 V-type ATP synthase s 44.0 3.3E+02 0.0072 26.9 13.5 43 566-612 70-112 (188)
318 PF14728 PHTB1_C: PTHB1 C-term 43.4 4.2E+02 0.0091 30.0 13.1 117 502-631 199-315 (377)
319 PRK11519 tyrosine kinase; Prov 43.3 2.8E+02 0.0061 33.2 12.4 94 222-325 261-354 (719)
320 COG4477 EzrA Negative regulato 43.3 6.7E+02 0.015 30.3 33.3 84 202-297 189-275 (570)
321 PF14915 CCDC144C: CCDC144C pr 43.2 5.2E+02 0.011 29.0 32.6 47 496-547 203-249 (305)
322 PF09403 FadA: Adhesion protei 43.0 3.2E+02 0.0069 26.8 10.6 107 216-338 14-121 (126)
323 PF09304 Cortex-I_coil: Cortex 43.0 3.2E+02 0.007 26.5 12.5 40 374-413 10-49 (107)
324 COG0497 RecN ATPase involved i 42.9 6.7E+02 0.015 30.2 22.5 61 380-449 164-224 (557)
325 PF12329 TMF_DNA_bd: TATA elem 42.6 1.2E+02 0.0026 26.8 7.1 56 200-256 6-61 (74)
326 PF02050 FliJ: Flagellar FliJ 42.6 2.2E+02 0.0048 24.5 10.9 38 554-591 54-91 (123)
327 PF12329 TMF_DNA_bd: TATA elem 42.2 79 0.0017 27.9 6.0 65 282-347 3-70 (74)
328 PF04012 PspA_IM30: PspA/IM30 41.9 3.8E+02 0.0083 27.0 19.9 106 439-553 36-141 (221)
329 PF05278 PEARLI-4: Arabidopsis 41.4 5.2E+02 0.011 28.5 13.9 22 485-506 158-179 (269)
330 PF06005 DUF904: Protein of un 41.2 2.6E+02 0.0057 24.9 9.2 71 371-459 2-72 (72)
331 KOG0018 Structural maintenance 41.2 9.4E+02 0.02 31.3 31.5 60 278-342 698-757 (1141)
332 PF12004 DUF3498: Domain of un 40.9 9 0.0002 44.3 0.0 111 226-345 374-493 (495)
333 KOG4460 Nuclear pore complex, 40.8 6.6E+02 0.014 30.7 14.4 32 379-410 708-739 (741)
334 TIGR02231 conserved hypothetic 40.7 3.9E+02 0.0084 30.6 12.6 29 382-410 73-101 (525)
335 PRK00286 xseA exodeoxyribonucl 40.5 5.7E+02 0.012 28.6 15.9 40 372-411 259-299 (438)
336 PF06810 Phage_GP20: Phage min 40.3 2.2E+02 0.0048 28.3 9.4 57 311-392 14-70 (155)
337 PRK09841 cryptic autophosphory 40.0 3.2E+02 0.0069 32.8 12.2 117 218-344 257-373 (726)
338 PF14362 DUF4407: Domain of un 39.8 4.8E+02 0.01 27.6 12.5 40 314-353 132-171 (301)
339 PF14992 TMCO5: TMCO5 family 39.7 5.7E+02 0.012 28.4 15.1 75 266-340 3-93 (280)
340 PRK03963 V-type ATP synthase s 39.0 4E+02 0.0087 26.4 12.9 45 567-615 72-116 (198)
341 PF14726 RTTN_N: Rotatin, an a 38.0 1.1E+02 0.0024 28.7 6.5 62 580-641 6-70 (98)
342 KOG3915 Transcription regulato 37.9 2.2E+02 0.0047 33.8 10.0 40 228-267 528-567 (641)
343 PF06008 Laminin_I: Laminin Do 37.9 4.9E+02 0.011 27.2 25.7 58 282-344 15-72 (264)
344 PF09731 Mitofilin: Mitochondr 37.9 6.9E+02 0.015 28.9 23.8 33 621-655 468-500 (582)
345 PF14915 CCDC144C: CCDC144C pr 37.7 6.4E+02 0.014 28.4 26.5 200 393-612 5-258 (305)
346 PF07334 IFP_35_N: Interferon- 37.6 43 0.00093 30.5 3.7 36 319-356 2-37 (76)
347 TIGR00414 serS seryl-tRNA synt 37.6 1.9E+02 0.004 32.7 9.4 85 263-355 30-114 (418)
348 PF09738 DUF2051: Double stran 36.7 6E+02 0.013 28.2 12.7 80 442-528 86-165 (302)
349 PF13863 DUF4200: Domain of un 36.5 3.4E+02 0.0074 24.9 14.2 22 556-577 85-106 (126)
350 TIGR01010 BexC_CtrB_KpsE polys 36.3 4.3E+02 0.0094 28.6 11.6 33 228-260 170-202 (362)
351 COG1382 GimC Prefoldin, chaper 35.4 4.4E+02 0.0096 25.9 11.4 43 373-415 6-48 (119)
352 PF15397 DUF4618: Domain of un 35.4 6.3E+02 0.014 27.6 20.0 150 375-540 76-230 (258)
353 PF01991 vATP-synt_E: ATP synt 35.3 4.2E+02 0.0092 25.6 14.7 60 571-638 67-126 (198)
354 COG0711 AtpF F0F1-type ATP syn 35.3 4.5E+02 0.0098 26.0 15.3 14 600-613 142-155 (161)
355 PF05700 BCAS2: Breast carcino 35.0 3E+02 0.0064 28.5 9.7 83 312-418 138-220 (221)
356 PF00170 bZIP_1: bZIP transcri 35.0 78 0.0017 26.5 4.6 34 311-344 27-60 (64)
357 PF10211 Ax_dynein_light: Axon 34.9 3E+02 0.0066 28.0 9.6 26 384-409 124-149 (189)
358 TIGR03545 conserved hypothetic 34.9 3.8E+02 0.0082 31.8 11.6 47 464-510 211-257 (555)
359 TIGR00618 sbcc exonuclease Sbc 34.6 1E+03 0.022 29.9 39.2 13 607-619 891-903 (1042)
360 PF03938 OmpH: Outer membrane 34.1 3.6E+02 0.0078 25.5 9.4 78 310-413 36-113 (158)
361 KOG4787 Uncharacterized conser 33.6 1E+03 0.022 29.5 20.0 93 295-415 331-423 (852)
362 COG4026 Uncharacterized protei 33.3 1.9E+02 0.004 31.6 8.0 44 539-582 143-186 (290)
363 PRK00409 recombination and DNA 33.3 6.9E+02 0.015 30.8 13.7 47 70-116 226-273 (782)
364 PF07889 DUF1664: Protein of u 33.2 3.6E+02 0.0078 26.5 9.4 77 208-284 30-110 (126)
365 PF04012 PspA_IM30: PspA/IM30 33.2 5.2E+02 0.011 26.1 19.8 38 377-414 34-71 (221)
366 PF02183 HALZ: Homeobox associ 33.2 67 0.0014 26.3 3.8 29 312-340 14-42 (45)
367 PF15188 CCDC-167: Coiled-coil 33.0 1.4E+02 0.0029 27.8 6.1 23 387-409 43-65 (85)
368 smart00502 BBC B-Box C-termina 32.6 3.4E+02 0.0075 23.8 13.7 58 428-485 9-66 (127)
369 TIGR03319 YmdA_YtgF conserved 32.2 8.9E+02 0.019 28.5 22.1 33 603-635 182-214 (514)
370 COG4026 Uncharacterized protei 31.8 1.9E+02 0.0041 31.5 7.8 78 236-339 129-206 (290)
371 PF03915 AIP3: Actin interacti 31.6 6.4E+02 0.014 29.3 12.4 72 315-409 204-275 (424)
372 PF03999 MAP65_ASE1: Microtubu 31.4 2E+02 0.0043 33.9 8.7 33 311-343 208-240 (619)
373 PRK08475 F0F1 ATP synthase sub 31.3 5.3E+02 0.012 25.6 15.0 16 472-487 49-64 (167)
374 PRK14127 cell division protein 31.1 2.1E+02 0.0045 27.5 7.3 47 301-347 21-67 (109)
375 PF07989 Microtub_assoc: Micro 31.1 3.7E+02 0.008 24.1 8.4 29 423-451 4-32 (75)
376 KOG1003 Actin filament-coating 30.5 7E+02 0.015 26.7 20.0 80 514-593 113-192 (205)
377 PTZ00234 variable surface prot 30.5 58 0.0013 37.3 4.1 14 764-777 339-352 (433)
378 PF15035 Rootletin: Ciliary ro 30.4 6.1E+02 0.013 26.0 12.3 30 383-412 84-113 (182)
379 PF05461 ApoL: Apolipoprotein 30.4 5.4E+02 0.012 28.5 11.2 81 508-591 13-93 (313)
380 PF04977 DivIC: Septum formati 30.3 1E+02 0.0023 25.7 4.7 34 312-345 19-52 (80)
381 KOG4637 Adaptor for phosphoino 30.2 9.5E+02 0.021 28.1 18.7 154 474-637 134-318 (464)
382 PF04518 Effector_1: Effector 30.2 60 0.0013 36.8 4.1 94 68-161 204-306 (379)
383 KOG0796 Spliceosome subunit [R 29.9 8.6E+02 0.019 27.5 12.7 119 503-638 76-205 (319)
384 TIGR01554 major_cap_HK97 phage 29.9 85 0.0018 34.1 5.1 62 280-341 2-65 (378)
385 KOG2180 Late Golgi protein sor 29.8 8E+02 0.017 30.7 13.1 51 578-628 115-181 (793)
386 PF04508 Pox_A_type_inc: Viral 29.2 57 0.0012 24.0 2.5 20 466-485 2-21 (23)
387 PRK10361 DNA recombination pro 29.2 1E+03 0.022 28.2 19.9 141 376-534 56-196 (475)
388 TIGR00293 prefoldin, archaeal 29.1 4.7E+02 0.01 24.2 9.4 34 311-344 7-40 (126)
389 smart00338 BRLZ basic region l 29.1 1.1E+02 0.0023 25.7 4.5 35 311-345 27-61 (65)
390 PF15450 DUF4631: Domain of un 28.9 1.1E+03 0.024 28.4 23.7 230 211-488 223-471 (531)
391 PF04375 HemX: HemX; InterPro 28.9 8.5E+02 0.018 27.2 15.2 61 526-593 129-189 (372)
392 PF02841 GBP_C: Guanylate-bind 28.7 4.9E+02 0.011 27.8 10.3 51 244-300 227-277 (297)
393 TIGR03495 phage_LysB phage lys 28.3 5.8E+02 0.013 25.4 9.9 24 566-589 82-109 (135)
394 PF08581 Tup_N: Tup N-terminal 28.3 4.6E+02 0.01 23.9 9.4 31 561-591 41-71 (79)
395 TIGR03752 conj_TIGR03752 integ 28.1 3.5E+02 0.0075 31.9 9.6 52 295-346 44-95 (472)
396 KOG0288 WD40 repeat protein Ti 28.0 1.1E+03 0.023 28.0 13.8 14 578-591 211-224 (459)
397 PF02050 FliJ: Flagellar FliJ 28.0 3.9E+02 0.0085 23.0 13.8 94 316-433 4-97 (123)
398 PRK15178 Vi polysaccharide exp 28.0 1E+03 0.022 27.8 17.9 107 389-506 244-354 (434)
399 TIGR03321 alt_F1F0_F0_B altern 27.9 7.2E+02 0.016 26.0 19.4 38 628-666 184-222 (246)
400 KOG1962 B-cell receptor-associ 27.6 3.5E+02 0.0075 28.9 8.8 25 273-297 154-178 (216)
401 PF15372 DUF4600: Domain of un 27.6 2.4E+02 0.0051 28.1 7.1 71 255-343 14-84 (129)
402 PF01920 Prefoldin_2: Prefoldi 27.5 4.2E+02 0.0092 23.2 10.8 23 430-452 9-31 (106)
403 smart00502 BBC B-Box C-termina 27.3 4.3E+02 0.0093 23.2 15.5 62 545-607 57-119 (127)
404 PF13094 CENP-Q: CENP-Q, a CEN 27.0 5.9E+02 0.013 24.7 11.1 38 471-508 121-158 (160)
405 PF05529 Bap31: B-cell recepto 26.9 1.9E+02 0.0041 28.8 6.5 31 268-298 152-182 (192)
406 PF03961 DUF342: Protein of un 26.9 4.5E+02 0.0098 29.7 10.2 34 313-346 330-363 (451)
407 PF12761 End3: Actin cytoskele 26.6 5.6E+02 0.012 27.1 9.9 112 367-499 83-194 (195)
408 PRK10869 recombination and rep 26.4 1.1E+03 0.024 27.7 22.4 14 110-123 26-39 (553)
409 COG4423 Uncharacterized protei 26.4 2.8E+02 0.0061 25.7 6.9 63 540-603 10-72 (81)
410 PF04977 DivIC: Septum formati 26.0 1.4E+02 0.0029 25.0 4.6 32 376-407 20-51 (80)
411 PF03915 AIP3: Actin interacti 25.9 1.1E+03 0.024 27.4 15.0 19 465-483 220-238 (424)
412 PF06008 Laminin_I: Laminin Do 25.7 7.9E+02 0.017 25.7 26.1 46 368-413 12-57 (264)
413 PF09325 Vps5: Vps5 C terminal 25.4 6.9E+02 0.015 24.9 23.2 24 428-451 26-49 (236)
414 PF09766 FimP: Fms-interacting 25.2 5.2E+02 0.011 28.8 10.1 117 228-346 12-144 (355)
415 PF07227 DUF1423: Protein of u 25.1 1.2E+03 0.026 27.6 13.4 66 373-450 350-415 (446)
416 COG4913 Uncharacterized protei 25.1 1.5E+03 0.033 28.8 17.0 85 435-523 618-704 (1104)
417 PF10212 TTKRSYEDQ: Predicted 24.9 1E+03 0.023 28.5 12.7 93 472-581 420-516 (518)
418 PRK03947 prefoldin subunit alp 24.8 6E+02 0.013 24.1 11.4 29 562-590 104-132 (140)
419 TIGR02894 DNA_bind_RsfA transc 24.7 3E+02 0.0066 28.3 7.5 35 312-346 120-154 (161)
420 TIGR03495 phage_LysB phage lys 24.6 7.1E+02 0.015 24.8 10.0 30 518-547 62-91 (135)
421 KOG0979 Structural maintenance 24.3 1.7E+03 0.036 29.1 24.5 30 383-412 198-227 (1072)
422 PF12443 AKNA: AT-hook-contain 24.3 37 0.00079 32.6 1.0 47 561-609 47-93 (106)
423 TIGR00237 xseA exodeoxyribonuc 24.1 1.1E+03 0.024 26.9 16.4 39 373-411 255-294 (432)
424 PF06785 UPF0242: Uncharacteri 23.9 1.2E+03 0.025 27.1 15.5 73 374-450 86-158 (401)
425 PF07544 Med9: RNA polymerase 23.4 4.5E+02 0.0098 23.6 7.6 66 268-342 15-80 (83)
426 PF12240 Angiomotin_C: Angiomo 23.4 5.6E+02 0.012 27.4 9.3 69 498-588 8-94 (205)
427 PF05103 DivIVA: DivIVA protei 23.4 44 0.00096 30.6 1.4 26 556-581 97-122 (131)
428 KOG1937 Uncharacterized conser 23.3 1.3E+03 0.029 27.5 24.4 21 431-451 260-280 (521)
429 TIGR02231 conserved hypothetic 23.2 7.3E+02 0.016 28.5 11.0 26 465-490 71-96 (525)
430 PRK09430 djlA Dna-J like membr 23.1 3.1E+02 0.0067 29.3 7.6 56 582-642 111-174 (267)
431 KOG0804 Cytoplasmic Zn-finger 23.0 8.4E+02 0.018 29.0 11.3 29 552-580 382-410 (493)
432 PRK10920 putative uroporphyrin 23.0 1.2E+03 0.026 26.8 13.0 20 574-593 176-195 (390)
433 COG1463 Ttg2C ABC-type transpo 23.0 1E+03 0.022 26.2 12.0 18 494-511 181-198 (359)
434 PF06632 XRCC4: DNA double-str 22.8 1.4E+02 0.003 33.4 5.2 60 242-301 137-204 (342)
435 PRK14692 lagellar hook-associa 22.4 1.2E+03 0.026 29.1 13.1 113 276-415 6-126 (749)
436 PF13949 ALIX_LYPXL_bnd: ALIX 22.3 8.9E+02 0.019 25.1 30.5 143 226-405 27-169 (296)
437 KOG0982 Centrosomal protein Nu 22.2 1.4E+03 0.03 27.3 19.7 65 493-560 297-368 (502)
438 PF05529 Bap31: B-cell recepto 22.2 6.5E+02 0.014 25.1 9.3 34 466-499 155-188 (192)
439 PRK05431 seryl-tRNA synthetase 22.1 2.7E+02 0.0059 31.5 7.4 83 264-355 29-111 (425)
440 PRK10929 putative mechanosensi 22.1 1.8E+03 0.04 28.7 36.7 85 205-302 43-127 (1109)
441 KOG0288 WD40 repeat protein Ti 22.0 1.4E+03 0.029 27.1 15.1 29 386-414 26-54 (459)
442 PF04102 SlyX: SlyX; InterPro 21.9 1.7E+02 0.0037 25.4 4.5 50 292-346 5-54 (69)
443 PF04201 TPD52: Tumour protein 21.8 1.8E+02 0.0039 29.8 5.3 31 561-591 31-61 (162)
444 COG4717 Uncharacterized conser 21.8 1.8E+03 0.039 28.5 29.4 93 312-412 552-645 (984)
445 KOG0962 DNA repair protein RAD 21.6 2E+03 0.044 29.0 35.7 62 477-543 1013-1074(1294)
446 cd00179 SynN Syntaxin N-termin 21.6 6.7E+02 0.014 23.4 11.7 54 479-535 9-62 (151)
447 PF05377 FlaC_arch: Flagella a 21.5 1.8E+02 0.0038 25.3 4.4 31 312-342 9-39 (55)
448 KOG2211 Predicted Golgi transp 21.3 1.7E+03 0.037 28.0 25.0 41 467-507 123-163 (797)
449 PLN03229 acetyl-coenzyme A car 21.3 1.7E+03 0.037 28.0 19.8 14 279-292 556-569 (762)
450 PF06637 PV-1: PV-1 protein (P 21.3 1.4E+03 0.03 26.9 22.3 78 268-345 226-320 (442)
451 PF02403 Seryl_tRNA_N: Seryl-t 21.3 5.8E+02 0.013 23.0 8.0 80 260-348 26-105 (108)
452 PF13801 Metal_resist: Heavy-m 21.3 4.1E+02 0.009 22.9 6.9 73 564-638 50-125 (125)
453 KOG4196 bZIP transcription fac 21.2 2.1E+02 0.0046 28.7 5.5 37 374-410 75-111 (135)
454 PF05600 DUF773: Protein of un 21.0 8.7E+02 0.019 28.6 11.2 87 496-588 407-496 (507)
455 PF06730 FAM92: FAM92 protein; 20.9 9.4E+02 0.02 25.9 10.5 80 424-505 92-187 (219)
456 KOG2264 Exostosin EXT1L [Signa 20.8 4.5E+02 0.0098 32.1 8.8 70 311-408 80-149 (907)
457 PRK05759 F0F1 ATP synthase sub 20.7 7.4E+02 0.016 23.6 12.4 20 471-490 30-49 (156)
458 COG1570 XseA Exonuclease VII, 20.7 1.4E+03 0.031 26.9 15.6 40 372-411 260-300 (440)
459 KOG2991 Splicing regulator [RN 20.3 1.2E+03 0.027 26.1 23.6 118 250-407 83-204 (330)
460 PLN02678 seryl-tRNA synthetase 20.1 5.3E+02 0.012 29.9 9.2 84 263-355 33-116 (448)
461 PF02403 Seryl_tRNA_N: Seryl-t 20.1 6.1E+02 0.013 22.9 7.9 36 500-535 57-92 (108)
462 KOG4010 Coiled-coil protein TP 20.1 1.8E+02 0.0039 30.8 5.0 36 553-590 40-75 (208)
463 PRK13428 F0F1 ATP synthase sub 20.0 1.4E+03 0.029 26.4 17.3 17 683-699 270-286 (445)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=98.91 E-value=3e-05 Score=89.35 Aligned_cols=76 Identities=16% Similarity=0.247 Sum_probs=45.4
Q ss_pred chhhHHHHHHHHHhhhHHHHHHHHHHhccc--ccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCC
Q 003941 274 KTSIEITEMRKELNGKLSELRRLQMELNRR--EDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNE 349 (784)
Q Consensus 274 kts~~~~~~~~el~ek~sei~rlq~~l~~~--e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~ 349 (784)
.....+..+..++.....++..+...|..- +-.+..+.++.++..+..+......++..+..+...|+.++..+..
T Consensus 374 ~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~ 451 (880)
T PRK02224 374 EAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEA 451 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444444444444444321 1123335677888888888888888888888888888888754333
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.88 E-value=0.00013 Score=84.92 Aligned_cols=34 Identities=15% Similarity=0.262 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 377 eme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHL 410 (784)
.++..+..++..+.....+......++..|++.+
T Consensus 291 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 324 (1164)
T TIGR02169 291 RVKEKIGELEAEIASLERSIAEKERELEDAEERL 324 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555443
No 3
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.79 E-value=4.3e-05 Score=86.39 Aligned_cols=240 Identities=19% Similarity=0.285 Sum_probs=134.6
Q ss_pred HHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccC--C
Q 003941 230 TRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDG--D 307 (784)
Q Consensus 230 i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e--~ 307 (784)
...|+.+.++-+..+..++..|...++.++.|+++...+.-.......+...+..++.+....|+.|..++..-... +
T Consensus 159 ~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E 238 (546)
T PF07888_consen 159 NEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKE 238 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555666667777777777777777777777777667777777777777777777777777554321111 0
Q ss_pred cchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHH
Q 003941 308 ANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEK 387 (784)
Q Consensus 308 ~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~ 387 (784)
..-.+..++.+...++.....|+. .|...+..++...+. ....+..+..|+.
T Consensus 239 ~e~~~~~lk~~~~elEq~~~eLk~---rLk~~~~~~~~~~~~-------------------------~~~~~~e~e~Lke 290 (546)
T PF07888_consen 239 QEKELDKLKELKAELEQLEAELKQ---RLKETVVQLKQEETQ-------------------------AQQLQQENEALKE 290 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhh-------------------------hhhHHHHHHHHHH
Confidence 111233333332222222222332 222222222221111 1112222334444
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 003941 388 DLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRE---NNEYQRAQILHLENVLKQTLAKQEEFKMMNH 464 (784)
Q Consensus 388 eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELre---enE~~R~~Is~lEraLK~~~a~qeelk~~n~ 464 (784)
+|..++.-...+.++..-|+.-|-+. .+-+| +++-||+. +++..+.++....-+|+...++....+....
T Consensus 291 qLr~~qe~lqaSqq~~~~L~~EL~~~------~~~RD-rt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~ 363 (546)
T PF07888_consen 291 QLRSAQEQLQASQQEAELLRKELSDA------VNVRD-RTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQ 363 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444445555555444333 22333 56677776 5777788888888888887777666555544
Q ss_pred HHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHH
Q 003941 465 SEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQ 504 (784)
Q Consensus 465 ~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgq 504 (784)
..+...+..|++|+..+.-.-+.+.-+..|...|+.=|++
T Consensus 364 ~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~k 403 (546)
T PF07888_consen 364 HSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGK 403 (546)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455567788888877766555666677777888887775
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.71 E-value=0.00018 Score=83.14 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=5.0
Q ss_pred CHHHHHHhhhcc
Q 003941 632 SDEDKQRIGMAQ 643 (784)
Q Consensus 632 SDEEK~riGL~~ 643 (784)
|-.+|.+++|+.
T Consensus 1091 S~g~~~~~~l~~ 1102 (1179)
T TIGR02168 1091 SGGEKALTALAL 1102 (1179)
T ss_pred CccHHHHHHHHH
Confidence 334444444443
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.69 E-value=0.00063 Score=83.07 Aligned_cols=65 Identities=8% Similarity=0.115 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhh-------HhhHHHHHHHHHHh
Q 003941 276 SIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSL-------KMEKTELVAALEKN 343 (784)
Q Consensus 276 s~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tl-------k~~~~eL~a~L~~~ 343 (784)
-..|..+..++..-...|..|..++..... +.+++.|+..+..++++...+ ..++..+...|..+
T Consensus 791 v~~i~r~~~ei~~l~~qie~l~~~l~~~~~---~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 791 VTIMERFQMELKDVERKIAQQAAKLQGSDL---DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccc---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566788888878888888888875444 125555555555555555554 44444444444444
No 6
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.67 E-value=0.00027 Score=89.05 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=38.8
Q ss_pred HHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhh---hhhhhHHhHHHHHHHHHHHHHHHhhccCCcc
Q 003941 531 EYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKG---RANKLEEDNAKLRLAVEQSMTRLNRMSVDSD 597 (784)
Q Consensus 531 ~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~---~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD 597 (784)
..++.-...++...+.|..+...-+..+....+... .+.+...++++.+++++..+.-|+.++.+.+
T Consensus 1189 ~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~ 1258 (1930)
T KOG0161|consen 1189 DSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQE 1258 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444455555555555444445555545443 3455667888888888887777776554333
No 7
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.65 E-value=0.00069 Score=78.97 Aligned_cols=27 Identities=15% Similarity=0.350 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHhHH
Q 003941 226 YESQTRQLRMELEQQRNKFADVQLKLQ 252 (784)
Q Consensus 226 ~~~~i~~l~~el~~~~~k~~~~~~~lq 252 (784)
+...+.+....|+.-.+.+..+...+.
T Consensus 168 ~~~~~~~~~~~l~~~~~~l~el~~~~~ 194 (1164)
T TIGR02169 168 FDRKKEKALEELEEVEENIERLDLIID 194 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555444443
No 8
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=8.8e-05 Score=90.26 Aligned_cols=164 Identities=15% Similarity=0.192 Sum_probs=88.4
Q ss_pred HhhhHHhHhHhhhhHHHHhhhhHHHhhhhhccccchhhhhhhhHHHHHhhhcCCCccCCCCcccCCCCCCCCCcccchhh
Q 003941 83 LQESEAEIKALSVNYAALLKEKEEQISRLNGEYGLLKQNLDATNAALNAFRNGNSKASSNGINIPKGSGDLSPSRQHKLT 162 (784)
Q Consensus 83 lq~seaeikals~nyaallkekedqi~rl~~engslk~nl~~t~~al~~~r~~~~~~s~n~~~~~kg~~d~sp~r~~~~~ 162 (784)
+..+..|+..+--||+.-+.+++.++.++..+...++.-+..+....+.-..+..+-.+.- ..| .
T Consensus 296 l~~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~l~~e~gkl~~~~-------------~~~--~ 360 (1311)
T TIGR00606 296 FQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLVEQGRLQLQA-------------DRH--Q 360 (1311)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHH--H
Confidence 3446788899999999999999999999999999998888877776655554433322211 111 1
Q ss_pred hhhccCCcccccccCccc--CCCCCCCccccchhhhhhccccchhhHHhhHHhhhchhHHHHHHHhHHHHHHHHHHHHHh
Q 003941 163 AQVKNRHAGHQLQNGFSK--QDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQ 240 (784)
Q Consensus 163 ~q~k~~~~~~~~~ng~~k--~~g~~~~~~~~~~~~~~~~~~~~~~~e~~d~le~~~~~~aa~qa~~~~~i~~l~~el~~~ 240 (784)
.+...|. ..+..=..+ .+|+.++.....+...+ ...+-.++...+..+...+..+..+++.+...|..-
T Consensus 361 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei 431 (1311)
T TIGR00606 361 EHIRARD--SLIQSLATRLELDGFERGPFSERQIKNF-------HTLVIERQEDEAKTAAQLCADLQSKERLKQEQADEI 431 (1311)
T ss_pred HHHHHHH--HHHHHHHHhcCcCCCCCcccchHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 000000111 23333332222211111 122445556666666667777777777777666666
Q ss_pred hhhhhhHHHhH-------HHHHhhchHHHHHHhhccc
Q 003941 241 RNKFADVQLKL-------QEEQRLNESFQDELKSLKM 270 (784)
Q Consensus 241 ~~k~~~~~~~l-------qee~k~n~~fqe~l~~lk~ 270 (784)
+.+++.....+ +...+.-+.++.+|..+..
T Consensus 432 ~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~ 468 (1311)
T TIGR00606 432 RDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEG 468 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 66655444333 3333444445555554433
No 9
>PRK01156 chromosome segregation protein; Provisional
Probab=98.64 E-value=0.00042 Score=80.68 Aligned_cols=91 Identities=13% Similarity=0.197 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCC----ccCCC-CCCCCcccCCCCccCCCCCchhHHHHHHHHH
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNE----KIFPD-ASEYPSRLDGKMVSSESFPGKEEMEQSLQKL 385 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~----k~~~d-a~e~~~r~~s~~~~~~sf~~kEeme~sl~~L 385 (784)
.++.++..++.|.++...|...+.+|...+..++.+.+. .+-|. .+++. .+...-. -..+...+..+
T Consensus 410 ~~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~c~~~~~------~e~~~e~--i~~~~~~i~~l 481 (895)
T PRK01156 410 ELNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLG------EEKSNHI--INHYNEKKSRL 481 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcCC------hhhHHHH--HHHHHHHHHHH
Confidence 346677777888888888888888888877777755331 11111 01111 1110000 22344555666
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 003941 386 EKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 386 ~~eL~e~~~E~dKa~kEL~RLRqH 409 (784)
..++.+...+..+...++.+|+..
T Consensus 482 ~~~i~~l~~~~~~l~~~~~~~~~~ 505 (895)
T PRK01156 482 EEKIREIEIEVKDIDEKIVDLKKR 505 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777776666666665544
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.61 E-value=0.00071 Score=78.30 Aligned_cols=43 Identities=23% Similarity=0.146 Sum_probs=24.2
Q ss_pred hhhhhccccchhhhhh-hhHHHHHhhhcCCCccCCCCcccCCCC
Q 003941 108 ISRLNGEYGLLKQNLD-ATNAALNAFRNGNSKASSNGINIPKGS 150 (784)
Q Consensus 108 i~rl~~engslk~nl~-~t~~al~~~r~~~~~~s~n~~~~~kg~ 150 (784)
+.-+-..|||=|-||= +...+|.......-|++.-+..+..|.
T Consensus 25 ~~~i~G~NGsGKS~ll~ai~~~lg~~~~~~~r~~~~~~~i~~g~ 68 (1179)
T TIGR02168 25 ITGIVGPNGCGKSNIVDAIRWVLGEQSAKALRGGKMEDVIFNGS 68 (1179)
T ss_pred cEEEECCCCCChhHHHHHHHHHHcCCchhhhhhccchhhhcCCC
Confidence 4456689999999975 556666443333334443333333343
No 11
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.59 E-value=0.00098 Score=80.63 Aligned_cols=43 Identities=35% Similarity=0.335 Sum_probs=34.5
Q ss_pred ccccchhhhh-hhhHHHHHhhhcCCCccCCCCcccCCCCCCCCC
Q 003941 113 GEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLSP 155 (784)
Q Consensus 113 ~engslk~nl-~~t~~al~~~r~~~~~~s~n~~~~~kg~~d~sp 155 (784)
+=|||=|-|+ ||..-+|-....-+.|++.-.-.+-+|++...|
T Consensus 31 GPNGSGKSNI~DAi~fVLG~~s~k~lRa~~~~DlIf~g~~~r~~ 74 (1163)
T COG1196 31 GPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSGNRKP 74 (1163)
T ss_pred CCCCCchHHHHHHHHHHhCcchhhhhhccCCcceeeCCCCCCCC
Confidence 4599999996 588888888878888888877777788888555
No 12
>PRK02224 chromosome segregation protein; Provisional
Probab=98.55 E-value=0.0012 Score=76.40 Aligned_cols=82 Identities=18% Similarity=0.180 Sum_probs=39.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhch--HHHHh-------hHHHHHhhhhhHHHhHHHHHhhhhhHh
Q 003941 426 KIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNH--SEIQK-------SKEIIDGLNNKLANCMRTIEAKNVELL 496 (784)
Q Consensus 426 k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~--~E~~~-------ske~iedL~~~L~~~mealeAKnvEl~ 496 (784)
.++++++........++..++..+.......+.++.... .++.. +...++++...+...-+.++.-..++.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~~~~~l~~l~~~~~~l~~~~~~~~e~le~~~~~~~~l~~e~~ 547 (880)
T PRK02224 468 ETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAA 547 (880)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455566655555555666666655554443333322211 11112 222333333444444444444455666
Q ss_pred hHHHHHHHHHH
Q 003941 497 NLQTALGQYFA 507 (784)
Q Consensus 497 NLQtALgqfqA 507 (784)
.|...+.+|-.
T Consensus 548 ~l~~~~~~~~~ 558 (880)
T PRK02224 548 ELEAEAEEKRE 558 (880)
T ss_pred HHHHHHHHHHH
Confidence 66666666654
No 13
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.42 E-value=0.0034 Score=79.62 Aligned_cols=159 Identities=30% Similarity=0.422 Sum_probs=94.3
Q ss_pred hhhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHH---HhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhh
Q 003941 213 EEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQ---LKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGK 289 (784)
Q Consensus 213 e~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~---~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek 289 (784)
+++..+++-.-+.++.++..|...|+++.....++. ++|.-+- +-+|+.+..++ ....++.++|--|
T Consensus 1005 eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el---~~~~e~~~~~~-------~~~~el~~~l~kk 1074 (1930)
T KOG0161|consen 1005 EEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGEL---KDLQESIEELK-------KQKEELDNQLKKK 1074 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHH-------HHHHHHHHHHHHH
Confidence 344444444555555555555555555444444433 3333332 23333333322 2344555666666
Q ss_pred HHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccC
Q 003941 290 LSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSS 369 (784)
Q Consensus 290 ~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~ 369 (784)
.+|+.++|.++ +.++..+..+.+....|..++.+|...|+.-|++. ..+++
T Consensus 1075 e~El~~l~~k~------------e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r----------------~K~ek- 1125 (1930)
T KOG0161|consen 1075 ESELSQLQSKL------------EDEQAEVAQLQKQIKELEARIKELEEELEAERASR----------------AKAER- 1125 (1930)
T ss_pred HHHHHHHHHHh------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHH-
Confidence 66666666554 55677788888888888888999999998888871 13333
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhH------H-HHHHHHHHHHHHHHHHHHHh
Q 003941 370 ESFPGKEEMEQSLQKLEKDLKETC------S-ERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 370 ~sf~~kEeme~sl~~L~~eL~e~~------~-E~dKa~kEL~RLRqHLLe~E 414 (784)
+..+|...++.|..+|.++- . -.-|-..|+.+||+-|-+..
T Consensus 1126 ----~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~ 1173 (1930)
T KOG0161|consen 1126 ----QRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEET 1173 (1930)
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777888888887761 1 12345678888888854443
No 14
>PRK03918 chromosome segregation protein; Provisional
Probab=98.35 E-value=0.013 Score=67.87 Aligned_cols=88 Identities=25% Similarity=0.317 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhH
Q 003941 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETC 393 (784)
Q Consensus 314 sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~ 393 (784)
.+...+..|+.+...++..+.+|...+..+..+-| .-|. ..+.+.....--....++..+..|++++..+.
T Consensus 402 ~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~--~Cp~-------c~~~L~~~~~~el~~~~~~ei~~l~~~~~~l~ 472 (880)
T PRK03918 402 EIEEEISKITARIGELKKEIKELKKAIEELKKAKG--KCPV-------CGRELTEEHRKELLEEYTAELKRIEKELKEIE 472 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCC-------CCCcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555666666666677777777777766654322 2222 10111110000011456777888888888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 003941 394 SERDKALQELTRLKQHL 410 (784)
Q Consensus 394 ~E~dKa~kEL~RLRqHL 410 (784)
.+..+..+++..+++.+
T Consensus 473 ~~~~~l~~~~~~~~~~~ 489 (880)
T PRK03918 473 EKERKLRKELRELEKVL 489 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888775543
No 15
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.34 E-value=0.0011 Score=77.07 Aligned_cols=199 Identities=24% Similarity=0.331 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhH
Q 003941 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETC 393 (784)
Q Consensus 314 sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~ 393 (784)
++|..|.+|+++|..|...+.+|.....+= + ++++.|++-|.+-+
T Consensus 457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~D-------------------------------K----q~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 457 SLKSELSQLRQENEQLQNKLQNLVQARQQD-------------------------------K----QSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------H----HHHHHHHHHHHHHH
Confidence 788888899999998888877765443221 2 23688899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHH
Q 003941 394 SERDKALQELTRLKQHLIEKAQEESEK-MDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKE 472 (784)
Q Consensus 394 ~E~dKa~kEL~RLRqHLLe~E~Ee~ek-mded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske 472 (784)
.-+..++++|...|.+-...|+-.... +-.. .... +-.|.||..+.+||.++++-... + ....+
T Consensus 502 ~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~--~~r~--e~~e~~r~r~~~lE~E~~~lr~e---l--------k~kee 566 (697)
T PF09726_consen 502 RQRASLEKQLQEERKARKEEEEKAARALAQAQ--ATRQ--ECAESCRQRRRQLESELKKLRRE---L--------KQKEE 566 (697)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhhhccccch--hccc--hhHHHHHHHHHHHHHHHHHHHHH---H--------HHHHH
Confidence 999999999999998755433211000 0000 0000 23556677777777777765221 1 11112
Q ss_pred HHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHH
Q 003941 473 IIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEI-EAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEIL 551 (784)
Q Consensus 473 ~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~-EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~ 551 (784)
++..|..++ ..|..|..|. .-.|-|...|++.++++.+|...|.+ |. +=|-++.
T Consensus 567 ~~~~~e~~~------------------~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsa-----Et--riKldLf 621 (697)
T PF09726_consen 567 QIRELESEL------------------QELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSA-----ET--RIKLDLF 621 (697)
T ss_pred HHHHHHHHH------------------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhH-----HH--HHHHHHH
Confidence 222221111 3445553332 23578999999999999999988754 33 2355677
Q ss_pred HhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHH
Q 003941 552 VKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMT 587 (784)
Q Consensus 552 ~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~ 587 (784)
..|+.+.+.+.+....+.+=+.++.-|+..+.+-|-
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888889999988888888888888888887655443
No 16
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.14 E-value=0.034 Score=65.93 Aligned_cols=92 Identities=24% Similarity=0.328 Sum_probs=65.7
Q ss_pred HHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcc--------hHHHHHHHHHHHHHHh
Q 003941 254 EQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDAN--------DVVENLKRVVATLEKE 325 (784)
Q Consensus 254 e~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~--------~~~~sLk~~~~~L~kE 325 (784)
|.-.=...+++|..+..+-.+.-++|..|..|| .--.+++||+.++.....+..+ ..+..|+...+.+..|
T Consensus 51 e~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~E 129 (775)
T PF10174_consen 51 EAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRE 129 (775)
T ss_pred HHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 333345678888888888889999999999999 7778999999998776555442 2344555566666666
Q ss_pred hhhhHhhHHHHHHHHHHhhhc
Q 003941 326 NNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 326 n~tlk~~~~eL~a~L~~~r~t 346 (784)
+.-|.....++...+++.+.+
T Consensus 130 l~~lr~~lE~~q~~~e~~q~~ 150 (775)
T PF10174_consen 130 LERLRKTLEELQLRIETQQQT 150 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655
No 17
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.99 E-value=0.041 Score=67.45 Aligned_cols=67 Identities=19% Similarity=0.339 Sum_probs=47.9
Q ss_pred CCChhHHHHHHHHHHHhhhHHhHhHhhhhHHHHhhhhHHHhhhhhccccchhhhhhhhHHHHHhhhc
Q 003941 68 PHDPEIERYKAEIKRLQESEAEIKALSVNYAALLKEKEEQISRLNGEYGLLKQNLDATNAALNAFRN 134 (784)
Q Consensus 68 ~~~~eie~ykaei~~lq~seaeikals~nyaallkekedqi~rl~~engslk~nl~~t~~al~~~r~ 134 (784)
+.-++|+++...+..|+..++++..|-.-|.+.....+.++..+..+-..++.++.......+..+.
T Consensus 243 ~~r~~~~~l~~~~~~l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~ 309 (1201)
T PF12128_consen 243 KVRPEFDKLQQQYRQLQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRD 309 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557788888889999999999999888888877777766666666655556555555554444443
No 18
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.98 E-value=0.099 Score=63.88 Aligned_cols=53 Identities=26% Similarity=0.392 Sum_probs=25.4
Q ss_pred ccchhhHHhhHHhhhchhH---HHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHH
Q 003941 201 MQGKEKELADLLEEKNRSL---AAERAAYESQTRQLRMELEQQRNKFADVQLKLQE 253 (784)
Q Consensus 201 ~~~~~~e~~d~le~~~~~~---aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqe 253 (784)
+||.=.+++.+=-+.++.+ ||--+.+...+.+....|+.-.+.+..++..+.+
T Consensus 142 ~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~e 197 (1163)
T COG1196 142 SQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEE 197 (1163)
T ss_pred ecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555444444444444433 2333445555555555555555555555544444
No 19
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=97.87 E-value=0.079 Score=59.89 Aligned_cols=145 Identities=26% Similarity=0.322 Sum_probs=98.2
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003941 376 EEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAK 455 (784)
Q Consensus 376 Eeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~ 455 (784)
..+...+..+..+|.++....+++.-|+..||.-. + =|+.+++..+..+..+.....
T Consensus 277 ~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~v-e-----------------sL~~ELe~~K~el~~lke~e~----- 333 (522)
T PF05701_consen 277 SELQSSLASAKKELEEAKKELEKAKEEASSLRASV-E-----------------SLRSELEKEKEELERLKEREK----- 333 (522)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-----------------HHHHHHHHHHHHHHHHHHHHH-----
Confidence 35666688899999999999999999999888652 1 133344444554444333222
Q ss_pred HHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHH
Q 003941 456 QEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKG----HLERELALAREESAKLSE 531 (784)
Q Consensus 456 qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~E----rLe~ELa~aree~a~Ls~ 531 (784)
.....+..++.++..++.+|..+...-.-..-...+|..+|.+...|.|.+. -...|++.++.++...-.
T Consensus 334 ------~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka 407 (522)
T PF05701_consen 334 ------EASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKA 407 (522)
T ss_pred ------HHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2345567777888888888888776655555678999999999999998762 334455666666666666
Q ss_pred HHHHhhhHHHHhhhhHHH
Q 003941 532 YLKNADQRAEVSRSEKEE 549 (784)
Q Consensus 532 ~Lk~a~q~ie~~~kEKee 549 (784)
.++.+..++.+..+|.+.
T Consensus 408 ~i~t~E~rL~aa~ke~ea 425 (522)
T PF05701_consen 408 AIKTAEERLEAALKEAEA 425 (522)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666655443
No 20
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.85 E-value=0.2 Score=63.22 Aligned_cols=79 Identities=16% Similarity=0.133 Sum_probs=58.4
Q ss_pred hhHHhhHHhhhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHH
Q 003941 205 EKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMR 283 (784)
Q Consensus 205 ~~e~~d~le~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~ 283 (784)
...+.-++.+-+.++||.=..|..+.+.+=.|....+.|......+|.+.+..-.-+.+.+..|.=...+...+..+..
T Consensus 256 rdlFk~lI~~~~~~~aad~~r~~eERR~liEEAag~r~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ 334 (1486)
T PRK04863 256 RDLFKHLITESTNYVAADYMRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAAS 334 (1486)
T ss_pred HHHHHHHhhhhhhhhHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999888888888888887766666666666555433333333333333
No 21
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.82 E-value=0.092 Score=61.03 Aligned_cols=295 Identities=22% Similarity=0.304 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCc
Q 003941 229 QTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDA 308 (784)
Q Consensus 229 ~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~ 308 (784)
=|+||.+|..++-.++.+-...+|+. +.-+-++++.|+-.|+.....|.+|... +++|+. |+..-......+
T Consensus 5 ~l~qlq~Erd~ya~~lk~e~a~~qqr---~~qmseev~~L~eEk~~~~~~V~eLE~s----L~eLk~-q~~~~~~~~~pa 76 (617)
T PF15070_consen 5 SLKQLQAERDQYAQQLKEESAQWQQR---MQQMSEEVRTLKEEKEHDISRVQELERS----LSELKN-QMAEPPPPEPPA 76 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-hhcccCCccccc
Confidence 46777777777777776666666543 4467788899988888877777665554 455543 444333333333
Q ss_pred c--hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHH
Q 003941 309 N--DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLE 386 (784)
Q Consensus 309 ~--~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~ 386 (784)
+ ..-..|+..++.|++|...|..++.....+-..+... +.+.+..+..|+
T Consensus 77 ~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L----------------------------~~EqEerL~ELE 128 (617)
T PF15070_consen 77 GPSEVEQQLQAEAEHLRKELESLEEQLQAQVENNEQLSRL----------------------------NQEQEERLAELE 128 (617)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHH
Confidence 3 3445899999999999999987777665555544111 234455566666
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q 003941 387 KDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSE 466 (784)
Q Consensus 387 ~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E 466 (784)
..|........ + +..||+. ..++|.. |--.-..|..++.++..|+....+-.-...++...-.+|
T Consensus 129 ~~le~~~e~~~----D----~~kLLe~--lqsdk~t-----~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~E 193 (617)
T PF15070_consen 129 EELERLQEQQE----D----RQKLLEQ--LQSDKAT-----ASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSE 193 (617)
T ss_pred HHHHHHHHHHH----H----HHHHHhh--hcccchH-----HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHH
Confidence 66655533210 1 2223332 1233332 222223577888999998887776554445555544444
Q ss_pred HHh---hHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHH-------HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003941 467 IQK---SKEIIDGLNNKLANCMRTIEAKNVELLNLQTA-------LGQYFAEIEAKGHLERELALAREESAKLSEYLKNA 536 (784)
Q Consensus 467 ~~~---ske~iedL~~~L~~~mealeAKnvEl~NLQtA-------LgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a 536 (784)
-.. +.....+|..+|-+.-+.|+.|+.|+.+||.- |.||.|.- ..+-.+-..+...+---++.
T Consensus 194 q~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~~~~Lqqy~a~~---q~l~~e~e~L~~q~l~Qtql---- 266 (617)
T PF15070_consen 194 QHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQYLGHLQQYVAAY---QQLASEKEELHKQLLQQTQL---- 266 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----
Confidence 332 44555566667777777999999999999885 34443322 12222222222221111111
Q ss_pred hhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHH
Q 003941 537 DQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQ 584 (784)
Q Consensus 537 ~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeq 584 (784)
++.+.++-.-....+......+.+.+..+..+..+|..|+.-|..
T Consensus 267 ---~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~ 311 (617)
T PF15070_consen 267 ---MDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSL 311 (617)
T ss_pred ---HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 122222211111112233455666677777788888888887743
No 22
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.81 E-value=0.11 Score=59.87 Aligned_cols=64 Identities=17% Similarity=0.283 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 278 EITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 278 ~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
++..+..+|+....+...|+.+ .++.....+.|...++.|..++......+.+|+..+.++...
T Consensus 172 ~v~~l~~eL~~~~ee~e~L~~~-----~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk 235 (546)
T PF07888_consen 172 EVERLEAELEQEEEEMEQLKQQ-----QKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQK 235 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554444444432 122234566777888888888888888888888888887443
No 23
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.79 E-value=0.08 Score=64.14 Aligned_cols=61 Identities=20% Similarity=0.066 Sum_probs=41.3
Q ss_pred HHHHhhHHHHHhhhhhHHHhH-------HHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 003941 465 SEIQKSKEIIDGLNNKLANCM-------RTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREE 525 (784)
Q Consensus 465 ~E~~~ske~iedL~~~L~~~m-------ealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree 525 (784)
-++..+.+.|.++.+.+++|- ...+.--.++.|++.+++.|.-+-++..++-.-+.+..++
T Consensus 415 ~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~e 482 (1195)
T KOG4643|consen 415 KKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAE 482 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 466677788888888888762 2233334588999999999988877776555444444444
No 24
>PRK03918 chromosome segregation protein; Provisional
Probab=97.79 E-value=0.14 Score=59.51 Aligned_cols=83 Identities=18% Similarity=0.337 Sum_probs=47.2
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHH---hccccc-----------CCcchHHHHHHHHHHHHHHhh
Q 003941 261 FQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQME---LNRRED-----------GDANDVVENLKRVVATLEKEN 326 (784)
Q Consensus 261 fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~---l~~~e~-----------e~~~~~~~sLk~~~~~L~kEn 326 (784)
+..++..+.-..+.....+.+++.++.+-..+|..|+.. |.+... ++-...+..+...+..|+++.
T Consensus 389 l~~~l~~l~~~~~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~c~~~L~~~~~~el~~~~~~ei~~l~~~~ 468 (880)
T PRK03918 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKEL 468 (880)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 334444444444445555555555555444444434332 332211 111234577888888888888
Q ss_pred hhhHhhHHHHHHHHHHh
Q 003941 327 NSLKMEKTELVAALEKN 343 (784)
Q Consensus 327 ~tlk~~~~eL~a~L~~~ 343 (784)
..++.++..|+..+...
T Consensus 469 ~~l~~~~~~l~~~~~~~ 485 (880)
T PRK03918 469 KEIEEKERKLRKELREL 485 (880)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888888888877765
No 25
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.77 E-value=0.16 Score=64.77 Aligned_cols=278 Identities=24% Similarity=0.288 Sum_probs=166.5
Q ss_pred cchhhHHhhHHhhh------chhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccch
Q 003941 202 QGKEKELADLLEEK------NRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKT 275 (784)
Q Consensus 202 ~~~~~e~~d~le~~------~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kt 275 (784)
.|.+++++|++.+. ...+-.+.-++.-.|..++..|..++......+.+.+-|-..+.-.-+.|..|+=+-.+.
T Consensus 993 k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~ 1072 (1822)
T KOG4674|consen 993 KGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKC 1072 (1822)
T ss_pred cchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566655442 334455566777888889999999988888888888888888888888877665444444
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHhcccccC-----C-cchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCC
Q 003941 276 SIEITEMRKELNGKLSELRRLQMELNRREDG-----D-ANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNE 349 (784)
Q Consensus 276 s~~~~~~~~el~ek~sei~rlq~~l~~~e~e-----~-~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~ 349 (784)
-.++.++ .+.+..++..+.+.+.. + -.+-+..+...++-|+++|..|-.++.++-+++.-+.-
T Consensus 1073 ~~e~~~L-------k~~~~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~---- 1141 (1822)
T KOG4674|consen 1073 NDELLKL-------KKSRESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNL---- 1141 (1822)
T ss_pred HHHHHHH-------HhhHHHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccc----
Confidence 4444443 33444444444442211 1 11345566667777777777777777666555443111
Q ss_pred ccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH
Q 003941 350 KIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIE 429 (784)
Q Consensus 350 k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~Ie 429 (784)
|... +|.+++..-+-.|+++......+++=+..|..||+|.---++ +.|+
T Consensus 1142 --------------S~~~-----~g~sdL~~iv~~LR~Ekei~~tk~~~lk~e~~~L~qq~~~~~-----------k~i~ 1191 (1822)
T KOG4674|consen 1142 --------------SAML-----LGLSDLQNIVSFLRKEKEIAETKLDTLKRENARLKQQVASLN-----------RTID 1191 (1822)
T ss_pred --------------cccc-----cchHHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHH-----------HHHH
Confidence 1111 356777777888899998888899999999999998833322 4566
Q ss_pred HHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHhhhc-hHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHH
Q 003941 430 ELRENNEYQRAQI---LHLENVLKQTLAKQEEFKMMN-HSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQY 505 (784)
Q Consensus 430 ELreenE~~R~~I---s~lEraLK~~~a~qeelk~~n-~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqf 505 (784)
+|+-.+...|... +.--...+--+..-..+--+. ++- -+++.-+.+..++.+.-..|...+.++.|||..|.+.
T Consensus 1192 dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~--~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el 1269 (1822)
T KOG4674|consen 1192 DLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNK--VLREENEANLEKIQELRDKIEKLNFELAPLQNELKEL 1269 (1822)
T ss_pred HHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Confidence 6765544444322 000000000000000000000 111 2355556666666666678888899999999999999
Q ss_pred HHHHHHhhhhHHHHHHHHHH
Q 003941 506 FAEIEAKGHLERELALAREE 525 (784)
Q Consensus 506 qAE~EA~ErLe~ELa~aree 525 (784)
.+++... ..++--++++
T Consensus 1270 ~~e~~~~---~ael~~l~~e 1286 (1822)
T KOG4674|consen 1270 KAELQEK---VAELKKLEEE 1286 (1822)
T ss_pred HHHHHHH---HHHHHHHHHH
Confidence 9988765 4444444444
No 26
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=97.71 E-value=0.061 Score=68.33 Aligned_cols=477 Identities=23% Similarity=0.263 Sum_probs=230.0
Q ss_pred HHHHhhhHHhHhHhhhhHHHHhhhhHHHhhhhhcc-------ccchhhhhhhhHHHHHhhhcCCCccCCCCcccCCCCCC
Q 003941 80 IKRLQESEAEIKALSVNYAALLKEKEEQISRLNGE-------YGLLKQNLDATNAALNAFRNGNSKASSNGINIPKGSGD 152 (784)
Q Consensus 80 i~~lq~seaeikals~nyaallkekedqi~rl~~e-------ngslk~nl~~t~~al~~~r~~~~~~s~n~~~~~kg~~d 152 (784)
|+..-...++--..+|||=-.+-+-+.+|.+|.+. +-+++-++.-++..|...-.+.+..+ .-.+.|-+.
T Consensus 33 ~~~~~~lk~e~~k~~v~~eq~~~~~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~---~~~~~~~~~ 109 (1822)
T KOG4674|consen 33 SKDFESLKDEDGKTEVNHEQQLSELEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLS---WEIDALKLE 109 (1822)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH---HHHHHhhhh
Confidence 34455567888899999999888888888887764 44455555555554443222211111 111223333
Q ss_pred CCCcccchhhhhhccCCcccccccCcccCCCCCCCccccchhhhhhccccchhhHHhhHHhhhchhHHHHHHHhHHHHHH
Q 003941 153 LSPSRQHKLTAQVKNRHAGHQLQNGFSKQDGVSNGSHALQTEVVQSSKMQGKEKELADLLEEKNRSLAAERAAYESQTRQ 232 (784)
Q Consensus 153 ~sp~r~~~~~~q~k~~~~~~~~~ng~~k~~g~~~~~~~~~~~~~~~~~~~~~~~e~~d~le~~~~~~aa~qa~~~~~i~~ 232 (784)
.+|-+.-+.-+|.--|. |-.+++-... .=....++++-
T Consensus 110 ~~~l~~~~se~~~qkr~--------------------------------------l~~~le~~~~----ele~l~~~n~~ 147 (1822)
T KOG4674|consen 110 NSQLRRAKSELQEQKRQ--------------------------------------LMELLERQKA----ELEALESENKD 147 (1822)
T ss_pred hHHHHHHHHHHHHHHHH--------------------------------------HHHHHHHHHH----HHHHHHHHHHH
Confidence 33322222222211111 2223333222 22345678999
Q ss_pred HHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhh---hHHHHHH--------HHHHhc
Q 003941 233 LRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNG---KLSELRR--------LQMELN 301 (784)
Q Consensus 233 l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~e---k~sei~r--------lq~~l~ 301 (784)
|..+|..-+.++-+++.++|+=+.---+||-.+..|-=.++=.--+.--|-.||+. |+..++| |+-.|+
T Consensus 148 l~~ql~ss~~~~~e~e~r~~e~~s~~vs~q~k~~rl~QEksll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~ 227 (1822)
T KOG4674|consen 148 LNDQLKSSTKTLSELEARLQETQSEDVSSQLKEERLEQEKSLLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLS 227 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999999999999999999887777777766665543333333333334444433 3333332 233333
Q ss_pred ccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccC-CCCccCCCCCchhHHHH
Q 003941 302 RREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLD-GKMVSSESFPGKEEMEQ 380 (784)
Q Consensus 302 ~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~-s~~~~~~sf~~kEeme~ 380 (784)
+- -..+..+++-+.-|+.+|..|..-+.++...|..++-|.+.-.-.---++..... .++.++ +.+++..
T Consensus 228 ~~-----~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~ks----~~ee~~~ 298 (1822)
T KOG4674|consen 228 DL-----KESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWKS----KLEELSH 298 (1822)
T ss_pred HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 21 1245556666666777777777777777777777766632220000000000000 001100 1112222
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--
Q 003941 381 SLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEE-- 458 (784)
Q Consensus 381 sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qee-- 458 (784)
.+..|.+.+.+...=.+-+.....-...+|..++ .=+...++-+...|+.||..|+.+.-....
T Consensus 299 ~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~--------------~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~ 364 (1822)
T KOG4674|consen 299 EVAELQRAIEELEKLLEDASERNKENTDQLKELE--------------QSLSKLNEKLEKKVSRLEGELEDANDSLSATG 364 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhc
Confidence 2222222222211111111111111111211111 111112333334445555444443211110
Q ss_pred -Hhhhch-----HHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHH
Q 003941 459 -FKMMNH-----SEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKG----HLERELALAREESAK 528 (784)
Q Consensus 459 -lk~~n~-----~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~E----rLe~ELa~aree~a~ 528 (784)
..|+.. +-+.+..-..-++-.+....-..++.-..||.=++.-|..|-.+.+... +-..+++++....+.
T Consensus 365 ~~~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~ 444 (1822)
T KOG4674|consen 365 ESSMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAE 444 (1822)
T ss_pred ccchhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 000000 0111111222222222222333555566677888888888888888774 456677788888888
Q ss_pred HHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh--------ccCCcchhh
Q 003941 529 LSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR--------MSVDSDFLV 600 (784)
Q Consensus 529 Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~--------ms~dsD~~V 600 (784)
+...|..+.+.+-...++-+.+...+.+.++.+....-.+..|-..+-.|..-|+..--.-.. +..+++
T Consensus 445 l~~el~~~~q~~~~~e~~~~~l~~~~~~~~renk~l~~~~sdlsrqv~~Ll~el~e~~~~~~~~~~s~~~~~es~S~--- 521 (1822)
T KOG4674|consen 445 LSEELDFSNQKIQKLEKELESLKKQLNDLERENKLLEQQISDLSRQVNVLLLELDELRKGSKITVSSDSTENESDSE--- 521 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCccccccCccHH---
Confidence 888887777776554444444444455555555555455555555554454444443222211 112233
Q ss_pred hHHHHHHHHHHHHh--cCCch--HHHHHHHHhcC
Q 003941 601 DRRIVIKLLVTYFQ--RNHSK--EVLDLMVRMLG 630 (784)
Q Consensus 601 DRRIVtkLLLTYf~--R~~sK--EVL~LMArMLg 630 (784)
-||+.=||.|=. --..+ +.|+ ++|.|+
T Consensus 522 --~iIse~Lv~F~nI~eLqekN~eLL~-~vR~La 552 (1822)
T KOG4674|consen 522 --EIISERLVEFSNINELQEKNVELLN-AVRELA 552 (1822)
T ss_pred --HHHHHHHHHhccHHHHHHHHHHHHH-HHHHHH
Confidence 466666666744 22333 7777 777775
No 27
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.69 E-value=0.16 Score=60.62 Aligned_cols=110 Identities=24% Similarity=0.345 Sum_probs=74.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcccccCCcc--hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCC
Q 003941 279 ITEMRKELNGKLSELRRLQMELNRREDGDAN--DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDAS 356 (784)
Q Consensus 279 ~~~~~~el~ek~sei~rlq~~l~~~e~e~~~--~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~ 356 (784)
|..+.-+|..|.+||-.+|-+|-...+.+.+ .-++-||..+.+.+.+++.|-.....|-..|+..-+.++-+
T Consensus 289 ~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk------ 362 (775)
T PF10174_consen 289 MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKK------ 362 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------
Confidence 6677778899999999998888766555444 35556666666666666666666666666665543322211
Q ss_pred CCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003941 357 EYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 357 e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqH 409 (784)
+. +.+.+...+..+.-+|.+.....|+...++.+|...
T Consensus 363 ----------~~-----~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~k 400 (775)
T PF10174_consen 363 ----------QA-----QIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKK 400 (775)
T ss_pred ----------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 355666667777778888888888888888888877
No 28
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.65 E-value=0.34 Score=59.77 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHhhhHHhHhHhhhhHHHHhhhhHHHhhhhhccccchhhhhhhh
Q 003941 72 EIERYKAEIKRLQESEAEIKALSVNYAALLKEKEEQISRLNGEYGLLKQNLDAT 125 (784)
Q Consensus 72 eie~ykaei~~lq~seaeikals~nyaallkekedqi~rl~~engslk~nl~~t 125 (784)
.|+++.+.+.++-.-..++..|..-|.+|..- +..+...+-.+++.|+..
T Consensus 343 ~i~~~~~~~~~l~~~~~~~~~l~~~~~~Lt~~----~~di~~ky~~~~~~l~~~ 392 (1201)
T PF12128_consen 343 DIEQLIARVDQLPEWRNELENLQEQLDLLTSK----HQDIESKYNKLKQKLEEA 392 (1201)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 37777777777777777777776666666543 333344444466666543
No 29
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.64 E-value=0.077 Score=58.46 Aligned_cols=33 Identities=15% Similarity=0.279 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003941 382 LQKLEKDLKETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 382 l~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 414 (784)
++.+++++.+...+......++.+|+.-+.+..
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~ 247 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLV 247 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666666666777777776666664
No 30
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.51 E-value=0.00065 Score=78.27 Aligned_cols=123 Identities=25% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcccccCCcc-----hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCC
Q 003941 279 ITEMRKELNGKLSELRRLQMELNRREDGDAN-----DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFP 353 (784)
Q Consensus 279 ~~~~~~el~ek~sei~rlq~~l~~~e~e~~~-----~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~ 353 (784)
+.+++.+|.+=-.++.+|+.++.-|..-..+ ++-+.|.+-|..|+.++.+|..+++.+.+.+..+.... ..+..
T Consensus 300 ~E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~-~~Le~ 378 (722)
T PF05557_consen 300 LEELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEI-QELEQ 378 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHH
Confidence 5677788887777888999999998875544 46678888899999999999999999999888876552 11111
Q ss_pred CCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 003941 354 DASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 354 da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~ 415 (784)
.... +. +..++++..+..+......+..-+.=+.+|.+-||+.|=.-+.
T Consensus 379 e~~~--------l~-----~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~ 427 (722)
T PF05557_consen 379 EKEQ--------LL-----KEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDK 427 (722)
T ss_dssp --------------------------------------------------------------
T ss_pred HHHH--------HH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1111 11 1233444444444444444444455567888888887655443
No 31
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=97.51 E-value=0.089 Score=53.64 Aligned_cols=64 Identities=28% Similarity=0.370 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhc
Q 003941 522 AREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRM 592 (784)
Q Consensus 522 aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~m 592 (784)
..+.+..|.+.|+.|..+++.+-+. ....+..+..+...+.+.+.....+.+-|+++|.-|+.|
T Consensus 174 ~e~~i~~L~~~lkeaE~Rae~aE~~-------v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~el~~~ 237 (237)
T PF00261_consen 174 YEEKIRDLEEKLKEAENRAEFAERR-------VKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLNELNEM 237 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 4556788888999999998875543 223455555555666666777777888888888887765
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.48 E-value=0.059 Score=59.36 Aligned_cols=161 Identities=14% Similarity=0.154 Sum_probs=92.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHH
Q 003941 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDL 389 (784)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL 389 (784)
..+..++..+..+.++...++.++..|..+|..++.. .++.+..+..++.++
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~----------------------------i~~~~~~L~~l~~~~ 264 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD----------------------------IEDPSAALNKLNTAA 264 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------------------cccHHHHHHHHHHHH
Confidence 4577888888888888888888888888888777522 123344466667777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHh
Q 003941 390 KETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQK 469 (784)
Q Consensus 390 ~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ 469 (784)
..+....++...++.-++.+- .-..= ...++.....+..|......++.++..++..+...-... .+...
T Consensus 265 ~~~~~~l~~~~~~~~~~~~~~-~Cp~C-~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~--------~~~~~ 334 (562)
T PHA02562 265 AKIKSKIEQFQKVIKMYEKGG-VCPTC-TQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIM--------DEFNE 334 (562)
T ss_pred HHHHHHHHHHHHHHHHhcCCC-CCCCC-CCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH
Confidence 777666666666666664100 00000 011111123344444444444444554444443221111 13444
Q ss_pred hHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHH
Q 003941 470 SKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAE 508 (784)
Q Consensus 470 ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE 508 (784)
....+.++++.+..+..+|...-.++..|+.-++.....
T Consensus 335 ~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 335 QSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566777777777777777777666666666666665555
No 33
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.46 E-value=0.59 Score=57.85 Aligned_cols=399 Identities=17% Similarity=0.158 Sum_probs=204.4
Q ss_pred cccchhhHHhhHHhhhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHH
Q 003941 200 KMQGKEKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEI 279 (784)
Q Consensus 200 ~~~~~~~e~~d~le~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~ 279 (784)
.|..+-++.-++|-..+-+ |.--+++-..+..||.+|-.-++++..++-+|-+=..-+-+-+-+|.+|.-+ ..-+
T Consensus 1205 ~me~kl~~ir~il~~~svs-~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~----~~~l 1279 (1758)
T KOG0994|consen 1205 DMEEKLEEIRAILSAPSVS-AEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQRE----FNGL 1279 (1758)
T ss_pred HHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHH----HHHH
Confidence 3555566677777544433 3344566677777788887777888777777777666666667777777533 3345
Q ss_pred HHHHHHHhhhHHHHHHH---------------HHHhcccccCCcc---hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHH
Q 003941 280 TEMRKELNGKLSELRRL---------------QMELNRREDGDAN---DVVENLKRVVATLEKENNSLKMEKTELVAALE 341 (784)
Q Consensus 280 ~~~~~el~ek~sei~rl---------------q~~l~~~e~e~~~---~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~ 341 (784)
.++-+||.++...|+.- -.+..++-+.... -.+++- |+-+-+.|....++. +-+=..+|.
T Consensus 1280 ~~~~keL~e~~~~ik~sdi~GA~~~~r~a~~~s~ea~~r~~~s~~~l~s~~~~s-R~e~l~~k~k~~f~~-~~~n~~~L~ 1357 (1758)
T KOG0994|consen 1280 LTTYKELREQLEKIKESDILGAFNSTRHAYEQSAEAERRVDASSRELASLVDQS-RVEELLVKQKGDFGG-LAENSRLLV 1357 (1758)
T ss_pred HHHHHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhh-HHHHHHHHhhhcccc-cccccHHHH
Confidence 67778888888877642 1234444443332 133333 666667777777766 222222233
Q ss_pred HhhhcCCCccCCCCCCCCcccCCC------------CccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003941 342 KNRKSSNEKIFPDASEYPSRLDGK------------MVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 342 ~~r~t~~~k~~~da~e~~~r~~s~------------~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqH 409 (784)
.+|.-+++---+++-+..=+-++. .+-.--|+.=.-.-........--.++..+.+.+..|..++.+.
T Consensus 1358 el~~~l~sL~L~~lne~vCG~p~apC~s~CGG~gC~~~~~cGg~sC~Ga~t~A~~A~~~A~~~~~~l~~~~ae~eq~~~~ 1437 (1758)
T KOG0994|consen 1358 ELRAELSSLPLTPLNEQVCGAPGAPCDSLCGGAGCRQDGTCGGLSCRGAVTRAGGALLMAGDADTQLRSKLAEAEQTLSM 1437 (1758)
T ss_pred HHHHHhcCCCCchhhHHhcCCCCCCCCCCCCCCCCCCCCCccCccccchhcccchHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 333222221112221111111100 00000011000000000000011123334445555555554444
Q ss_pred HHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhch----HHHHhhHHHHHhh
Q 003941 410 LIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQ--------EEFKMMNH----SEIQKSKEIIDGL 477 (784)
Q Consensus 410 LLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~q--------eelk~~n~----~E~~~ske~iedL 477 (784)
+-+-....++......+..+-......++..-+..|+. |-+++-++ +.++++.. .+|-..-++|..|
T Consensus 1438 v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~-Li~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L 1516 (1758)
T KOG0994|consen 1438 VREAKLSASEAQQSAQRALEQANASRSQMEESNRELRN-LIQQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQL 1516 (1758)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 44333333322222222222222222222222222222 11111111 22222221 1333334556665
Q ss_pred hhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH---HHHHHHhhhHHHHhhhhHHHHHHhh
Q 003941 478 NNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKL---SEYLKNADQRAEVSRSEKEEILVKL 554 (784)
Q Consensus 478 ~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~L---s~~Lk~a~q~ie~~~kEKeei~~KL 554 (784)
+..|...=..|.|.-..|.+--.++.-++.|.++..++++....+ +...++|.+.++.+..+. ...+
T Consensus 1517 -------~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a---~~ai 1586 (1758)
T KOG0994|consen 1517 -------TGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEA---QDAI 1586 (1758)
T ss_pred -------HHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 334444445678888899999999999999999999999885543 234444444444433332 2345
Q ss_pred hHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHh-cCCchHHHHHH
Q 003941 555 SHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQ-RNHSKEVLDLM 625 (784)
Q Consensus 555 s~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~-R~~sKEVL~LM 625 (784)
.++-..+.....++.|+.++....-+.+..+-++|.. ++ +.|..|=+.|.+ ....|.+....
T Consensus 1587 ~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~e--------L~-~~~e~lk~~~~qns~~A~~a~~~a 1649 (1758)
T KOG0994|consen 1587 QGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGE--------LE-TRMEELKHKAAQNSAEAKQAEKTA 1649 (1758)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HH-HHHHHHHHHHHhccHHHHHHHHHH
Confidence 5677777788888888888888888888888888876 33 346677777776 44444444433
No 34
>PRK04863 mukB cell division protein MukB; Provisional
Probab=97.43 E-value=0.64 Score=59.02 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHH
Q 003941 500 TALGQYFAEIEAK-GHLERELALAREESAKLSEYLKN 535 (784)
Q Consensus 500 tALgqfqAE~EA~-ErLe~ELa~aree~a~Ls~~Lk~ 535 (784)
.+|++|+++.||. +.+..+++.+.+.-..+-+.+..
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~q 590 (1486)
T PRK04863 554 DELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777776 36666666555554444433333
No 35
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.40 E-value=0.21 Score=51.56 Aligned_cols=107 Identities=21% Similarity=0.350 Sum_probs=52.0
Q ss_pred HHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHH
Q 003941 473 IIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILV 552 (784)
Q Consensus 473 ~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~ 552 (784)
+++++.........++.+...|+..+..-+....++++. ++..++.|...|.+..+.... +...+-.
T Consensus 196 k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~----------l~~~~~~Le~~l~~le~~~~~---~~~~~~~ 262 (312)
T PF00038_consen 196 KLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELES----------LRAKNASLERQLRELEQRLDE---EREEYQA 262 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred ccccccccccccccccchhHhHHHHHHhhhhHhhhhhhc----------cccchhhhhhhHHHHHHHHHH---HHHHHHH
Confidence 344455555555555666666666666666555555533 444455555554444444432 2222223
Q ss_pred hhhHHHHHHHhhhhhhhhhH---HhHHHHHHHHHHHHHHHhhc
Q 003941 553 KLSHSEKMLAEGKGRANKLE---EDNAKLRLAVEQSMTRLNRM 592 (784)
Q Consensus 553 KLs~~E~~l~e~K~~~~KL~---eDn~kLR~ALeqsl~RL~~m 592 (784)
.+...+..+.+++..+.... ++.--++-+|+.=|..++++
T Consensus 263 ~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~L 305 (312)
T PF00038_consen 263 EIAELEEELAELREEMARQLREYQELLDVKLALDAEIATYRKL 305 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33334444444444443333 33334455555555555543
No 36
>PRK11637 AmiB activator; Provisional
Probab=97.38 E-value=0.13 Score=56.29 Aligned_cols=36 Identities=17% Similarity=0.360 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 375 kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHL 410 (784)
.+++++.++.+++++.++..+.+.+.++|..|-..|
T Consensus 49 l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi 84 (428)
T PRK11637 49 LKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAI 84 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666666655553
No 37
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.37 E-value=0.64 Score=56.43 Aligned_cols=107 Identities=23% Similarity=0.311 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHH------
Q 003941 226 YESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQME------ 299 (784)
Q Consensus 226 ~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~------ 299 (784)
+.+|.++|..+|+--|-|-++=..||-|=.|.- .--++|.+. |.|+---.-.|.+||-.-.-|.+.+|.-
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~Elekmk-iqleqlqEf---kSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~ 304 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMK-IQLEQLQEF---KSKIMEQQADLQRELKRARKEAKEAQEAKERYKE 304 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678888777777766666666655433321 111222222 2344444555666666666666655532
Q ss_pred ----------hcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 003941 300 ----------LNRREDGDANDVVENLKRVVATLEKENNSLKMEKTEL 336 (784)
Q Consensus 300 ----------l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL 336 (784)
+-.-+.|-+.+-.++|+..+++++.-++.|.....=|
T Consensus 305 emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEIL 351 (1243)
T KOG0971|consen 305 EMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEIL 351 (1243)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222333333344555555555555544444433333
No 38
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.34 E-value=0.52 Score=58.42 Aligned_cols=25 Identities=40% Similarity=0.615 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcc
Q 003941 278 EITEMRKELNGKLSELRRLQMELNR 302 (784)
Q Consensus 278 ~~~~~~~el~ek~sei~rlq~~l~~ 302 (784)
+..++.+||++-+.+++-...+|.+
T Consensus 462 ~~~~~~keL~e~i~~lk~~~~el~~ 486 (1317)
T KOG0612|consen 462 ELEEMDKELEETIEKLKSEESELQR 486 (1317)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666776665555555555554
No 39
>PRK01156 chromosome segregation protein; Provisional
Probab=97.33 E-value=0.6 Score=55.14 Aligned_cols=43 Identities=21% Similarity=0.312 Sum_probs=25.2
Q ss_pred hHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhc
Q 003941 259 ESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELN 301 (784)
Q Consensus 259 ~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~ 301 (784)
..+..++..+.-....+..++..+..++++...++..|..++.
T Consensus 200 ~~~~~~i~el~~~~~~l~~~i~~~~~el~~~~~~l~~l~~~l~ 242 (895)
T PRK01156 200 ENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALN 242 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555556666666666666666666665443
No 40
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.32 E-value=0.77 Score=56.19 Aligned_cols=50 Identities=26% Similarity=0.317 Sum_probs=32.0
Q ss_pred CCCCChhHHHHHHHHHHHhhhHHhHhHhhhhHHHH---hhhhHHHhhhhhccccch
Q 003941 66 ESPHDPEIERYKAEIKRLQESEAEIKALSVNYAAL---LKEKEEQISRLNGEYGLL 118 (784)
Q Consensus 66 ~~~~~~eie~ykaei~~lq~seaeikals~nyaal---lkekedqi~rl~~engsl 118 (784)
...-.-+|--+++.|++|+.- =|=|+ =|.--| |..+|-.|++|++|+|-+
T Consensus 172 ~~hL~velAdle~kir~LrqE-lEEK~--enll~lr~eLddleae~~klrqe~~e~ 224 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQE-LEEKF--ENLLRLRNELDDLEAEISKLRQEIEEF 224 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455788889999998742 22233 333332 455677899999998854
No 41
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=97.30 E-value=0.013 Score=63.18 Aligned_cols=221 Identities=27% Similarity=0.380 Sum_probs=112.4
Q ss_pred hchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHH--HHHhhchHHHHHHhhcccCccchhhHHHH----HHHHHhh
Q 003941 215 KNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQ--EEQRLNESFQDELKSLKMDKDKTSIEITE----MRKELNG 288 (784)
Q Consensus 215 ~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lq--ee~k~n~~fqe~l~~lk~~~~kts~~~~~----~~~el~e 288 (784)
.++.+=..-++.....+-|..++..-|...-.|+.+-+ ||.--|..|+ -|..|+-+|+...+.+.+ |-|-|.-
T Consensus 35 en~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlK-kl~~l~keKe~L~~~~e~EEE~ltn~L~r 113 (310)
T PF09755_consen 35 ENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLK-KLQQLKKEKETLALKYEQEEEFLTNDLSR 113 (310)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444455555555555555555555542 3333444444 477777777766655544 7777888
Q ss_pred hHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhh-------hhHhhHHHHHHHHHHhhhcCCC------------
Q 003941 289 KLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENN-------SLKMEKTELVAALEKNRKSSNE------------ 349 (784)
Q Consensus 289 k~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~-------tlk~~~~eL~a~L~~~r~t~~~------------ 349 (784)
|+..|+.-..+|-+.=..+..-.|..|++.|..|+++.. .|..++.+|+-.|+.=.-.+-+
T Consensus 114 kl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~e 193 (310)
T PF09755_consen 114 KLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAE 193 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 877777776666665444454566677776666665432 2333344444443321111111
Q ss_pred ------ccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 003941 350 ------KIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDE 423 (784)
Q Consensus 350 ------k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmde 423 (784)
++.+..+....-. |... .-..+.. .+. ...-+..+..|+.|||+.|...+-+..++|--
T Consensus 194 Kr~Lq~~l~~~~s~~~s~~--d~~~--~~~~~Dt----~e~-------~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~ 258 (310)
T PF09755_consen 194 KRRLQEKLEQPVSAPPSPR--DTVN--VSEENDT----AER-------LSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQ 258 (310)
T ss_pred HHHHHHHHccccCCCCCcc--hHHh--hcccCCc----hhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111000000000 0000 0000111 122 23335667788889999998888777766654
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003941 424 DSKIIEELRENNEYQRAQILHLENVLKQTLAKQEE 458 (784)
Q Consensus 424 d~k~IeELreenE~~R~~Is~lEraLK~~~a~qee 458 (784)
=.....++|++| ..|.+.|..+++..+.
T Consensus 259 ~~~eek~ireEN-------~rLqr~L~~E~errea 286 (310)
T PF09755_consen 259 YLQEEKEIREEN-------RRLQRKLQREVERREA 286 (310)
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 333334555566 5566677777666554
No 42
>PF10375 GRAB: GRIP-related Arf-binding domain ; InterPro: IPR019459 The GRIP-related Arf-binding (GRAB) domain is located towards the C terminus of Rud3 type proteins. It is related to the GRIP domain, but the conserved tyrosine residue found at position 4 in all GRIP domains is replaced by a leucine residue. The small GTPase Arf is localised to the cis-Golgi where it recruits proteins via their GRAB domain, as part of the transport of cargo from the endoplasmic reticulum to the plasma membrane [].
Probab=97.24 E-value=0.00016 Score=49.54 Aligned_cols=18 Identities=33% Similarity=0.670 Sum_probs=16.6
Q ss_pred cchhhhHHHHHHHHHHHH
Q 003941 596 SDFLVDRRIVIKLLVTYF 613 (784)
Q Consensus 596 sD~~VDRRIVtkLLLTYf 613 (784)
++++||||||||+||+||
T Consensus 2 ~e~~VDk~lisN~~l~Fl 19 (19)
T PF10375_consen 2 SEDNVDKRLISNLLLSFL 19 (19)
T ss_pred chhhHHHHHHHHHHHhcC
Confidence 678999999999999996
No 43
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.24 E-value=0.91 Score=56.46 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=21.8
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003941 374 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 374 ~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqH 409 (784)
+..+|+..+..|+.....+..+..+...++.+.|+.
T Consensus 582 ~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~ 617 (1317)
T KOG0612|consen 582 ENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQ 617 (1317)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666666666666666655544
No 44
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.22 E-value=1 Score=55.46 Aligned_cols=41 Identities=32% Similarity=0.399 Sum_probs=25.2
Q ss_pred hhhhHHhHHHHHHHHHHHHHHH-hhccCCcchhhhHHHHHHHHHHH
Q 003941 568 ANKLEEDNAKLRLAVEQSMTRL-NRMSVDSDFLVDRRIVIKLLVTY 612 (784)
Q Consensus 568 ~~KL~eDn~kLR~ALeqsl~RL-~~ms~dsD~~VDRRIVtkLLLTY 612 (784)
+++|.+- +...+++++|-.+ |..++.+. .|.+++..++=..
T Consensus 502 ~Vtl~~~--KWa~aIE~~L~n~lnaFiv~sh--~D~~~Lr~i~~~~ 543 (1074)
T KOG0250|consen 502 YVTLKEP--KWALAIERCLGNLLNAFIVTSH--KDARILRAIMRRL 543 (1074)
T ss_pred eeEecCc--HHHHHHHHHHHHhhhhheeCCH--hhHHHHHHHHHHc
Confidence 4445555 7777888777765 66664443 6666666665433
No 45
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.06 E-value=0.87 Score=52.75 Aligned_cols=102 Identities=14% Similarity=0.176 Sum_probs=57.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHH
Q 003941 220 AAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQME 299 (784)
Q Consensus 220 aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~ 299 (784)
....-+-.-+|.+|.-.|..+-+|+..+.- .|.-++-+|+.|+---.+-+ ..|+.-.+..+...|++=.+
T Consensus 34 r~sR~rEK~El~~LNDRLA~YIekVR~LEa-------qN~~L~~di~~lr~~~~~~t---s~ik~~ye~El~~ar~~l~e 103 (546)
T KOG0977|consen 34 RDSREREKKELQELNDRLAVYIEKVRFLEA-------QNRKLEHDINLLRGVVGRET---SGIKAKYEAELATARKLLDE 103 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhccCCC---cchhHHhhhhHHHHHHHHHH
Confidence 334445566888999999999999876542 37778888888865443332 22333333333333333222
Q ss_pred hcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHH
Q 003941 300 LNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAA 339 (784)
Q Consensus 300 l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~ 339 (784)
-. .....++..|..|+.|+..|+..+.+.+..
T Consensus 104 ~~--------~~ra~~e~ei~kl~~e~~elr~~~~~~~k~ 135 (546)
T KOG0977|consen 104 TA--------RERAKLEIEITKLREELKELRKKLEKAEKE 135 (546)
T ss_pred HH--------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 11 123445555555666666655555544333
No 46
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.06 E-value=1.1 Score=53.12 Aligned_cols=261 Identities=22% Similarity=0.261 Sum_probs=130.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh-------h--------hhhh----hhhhHHHHH
Q 003941 370 ESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQE-------E--------SEKM----DEDSKIIEE 430 (784)
Q Consensus 370 ~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~E-------e--------~ekm----ded~k~IeE 430 (784)
.-.|-+++..+-+..|++-...++.|||.+.+|..-||..|-..=.- + .||+ =-++.+|.-
T Consensus 399 ~~ssl~~e~~QRva~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkK 478 (961)
T KOG4673|consen 399 EVSSLREEYHQRVATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKK 478 (961)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33467999999999999999999999999999999888765432110 0 1111 113445555
Q ss_pred HHH---hHHHHHH----HHHHHHHH---HHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHH
Q 003941 431 LRE---NNEYQRA----QILHLENV---LKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQT 500 (784)
Q Consensus 431 Lre---enE~~R~----~Is~lEra---LK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQt 500 (784)
||. ++|.+.. +|..|+.. ||.-.+..++.....-.-|.+++.+..+-+..+.+.-..+++....+.-+|.
T Consensus 479 LRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qa 558 (961)
T KOG4673|consen 479 LRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQA 558 (961)
T ss_pred HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 554 2322222 22222221 2222222233322223334444555554444444422222233334455677
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHH-HH----HHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhH---
Q 003941 501 ALGQYFAEIEAKGHLERELALAREE-SA----KLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLE--- 572 (784)
Q Consensus 501 ALgqfqAE~EA~ErLe~ELa~aree-~a----~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~--- 572 (784)
++...|.+.--.-||.++-++.++. ++ .|-+.|..+.|.+ +.+|- .+-+-+.+.++.|++.-.+|.-|.
T Consensus 559 t~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~a--arrEd-~~R~Ei~~LqrRlqaaE~R~eel~q~v 635 (961)
T KOG4673|consen 559 TNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQA--ARRED-MFRGEIEDLQRRLQAAERRCEELIQQV 635 (961)
T ss_pred hhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7777666553344555555554444 22 2333444444432 22332 122445566666776666666544
Q ss_pred --------HhHHHHHHHHHHHHHHHhhccCCcchhhhHHHH-HHHHHHHH-hcCCchHHHHHHHHhcCCCHHHHHH
Q 003941 573 --------EDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIV-IKLLVTYF-QRNHSKEVLDLMVRMLGFSDEDKQR 638 (784)
Q Consensus 573 --------eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIV-tkLLLTYf-~R~~sKEVL~LMArMLgFSDEEK~r 638 (784)
-.++-|-++|.++..--.+ ...+|--||- +..|+.-. .+.+ .+--+||+.-+|++...-+-
T Consensus 636 ~~TTrPLlRQIE~lQ~tl~~~~tawer----eE~~l~~rL~dSQtllr~~v~~eq-gekqElL~~~~~l~s~~~q~ 706 (961)
T KOG4673|consen 636 PETTRPLLRQIEALQETLSKAATAWER----EERSLNERLSDSQTLLRINVLEEQ-GEKQELLSLNFSLPSSPIQL 706 (961)
T ss_pred cccccHHHHHHHHHHHHHhhhhhHHHH----HHHHHHHhhhhHHHHHHHHHHHHh-hhHHHHHHHhcCCCcchhHH
Confidence 4566677777666554444 2233444443 23333322 2321 12334555555665554443
No 47
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.05 E-value=0.62 Score=57.63 Aligned_cols=218 Identities=23% Similarity=0.299 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHH
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLK 390 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~ 390 (784)
+|+-+.+.+......-..+..+..+++..+...|-. --+|+..++.+..+++
T Consensus 779 ~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~----------------------------~~~l~~~l~~~~~~~k 830 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQHQEQLHELEERVRKLRER----------------------------IPELENRLEKLTASVK 830 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------------hHHHHhHHHHHHHHHH
Confidence 566666666666666666666666666666666433 1145555666666666
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHH----------
Q 003941 391 ETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHL-ENVLKQTLAKQEEF---------- 459 (784)
Q Consensus 391 e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~l-EraLK~~~a~qeel---------- 459 (784)
..+.+..-+.+-+..+-...+-. .-|.+-.+++++..+.++.++..+ |.+.|++ ....+
T Consensus 831 ~~~~~~~~l~~~i~~~E~~~~k~--------~~d~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~--~i~~lq~~i~~i~~e 900 (1293)
T KOG0996|consen 831 RLAELIEYLESQIAELEAAVLKK--------VVDKKRLKELEEQIEELKKEVEELQEKAAKKA--RIKELQNKIDEIGGE 900 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhc--------cCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHH--HHHHHHHHHHHhhch
Confidence 66554444444333333331111 111223344444444455555555 5555521 11111
Q ss_pred -hhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHHHH
Q 003941 460 -KMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKG----HLERELALAREESAKLSEYLK 534 (784)
Q Consensus 460 -k~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~E----rLe~ELa~aree~a~Ls~~Lk 534 (784)
=..+...+.+++++|+.|.++++.|-.+|+-.+.-+.-.|.-|...--+++..+ -|..++--+.+..+.+...++
T Consensus 901 ~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~ 980 (1293)
T KOG0996|consen 901 KVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYK 980 (1293)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 112235666666777777777666665555544444444444444444443331 122222222222333333333
Q ss_pred HhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhh
Q 003941 535 NADQRAEVSRSEKEEILVKLSHSEKMLAEGKG 566 (784)
Q Consensus 535 ~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~ 566 (784)
++...+...+.+-..+-..+...+...+++|.
T Consensus 981 e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~ 1012 (1293)
T KOG0996|consen 981 EAEESLKEIKKELRDLKSELENIKKSENELKA 1012 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333445566666677665
No 48
>PRK11637 AmiB activator; Provisional
Probab=96.98 E-value=0.14 Score=55.87 Aligned_cols=83 Identities=7% Similarity=0.137 Sum_probs=53.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHH
Q 003941 220 AAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQME 299 (784)
Q Consensus 220 aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~ 299 (784)
++..+....++++++.++.+...++.+++.++.+-.+.=..+..+|..+.-.-..+..++..+..++.....+|..++.+
T Consensus 39 ~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 39 SAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345567778888888887777777777776665555555666666665555555566666666666666666666665
Q ss_pred hcc
Q 003941 300 LNR 302 (784)
Q Consensus 300 l~~ 302 (784)
|..
T Consensus 119 l~~ 121 (428)
T PRK11637 119 QAA 121 (428)
T ss_pred HHH
Confidence 554
No 49
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.96 E-value=1.7 Score=53.40 Aligned_cols=72 Identities=33% Similarity=0.416 Sum_probs=52.1
Q ss_pred ccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhh
Q 003941 269 KMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 269 k~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~ 345 (784)
++|+.|-+.|-.=.-+||+|-..++-+|...-+. ++..-.++...+...+.+-..++.++++|+..|+.++.
T Consensus 215 kldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~~-----~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ 286 (1200)
T KOG0964|consen 215 KLDKERRSLEYTIYDRELNEINGELERLEEDRSS-----APEESEQYIDALDKVEDESEDLKCEIKELENKLTNLRE 286 (1200)
T ss_pred HHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHhc-----cchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999766543 22223344444555555666667777777777777765
No 50
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=96.94 E-value=1.5 Score=52.32 Aligned_cols=100 Identities=20% Similarity=0.284 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHH
Q 003941 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDL 389 (784)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL 389 (784)
.++..+..++...++++.++..-..+|++.+-....|+..- +-+ +++ ++.|
T Consensus 523 E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a------------------------~~D----lqk-~nrl 573 (961)
T KOG4673|consen 523 ETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEA------------------------RSD----LQK-ENRL 573 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh------------------------hhh----HHH-Hhhh
Confidence 35666666666667777776666777777776665552211 002 121 3334
Q ss_pred H--HhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 390 K--ETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 452 (784)
Q Consensus 390 ~--e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~ 452 (784)
+ +++++-.-..+-+.-||+.|--.| .+-.. .-.|+|..|.+|.|-|-.+
T Consensus 574 kQdear~~~~~lvqqv~dLR~~L~~~E--q~aar------------rEd~~R~Ei~~LqrRlqaa 624 (961)
T KOG4673|consen 574 KQDEARERESMLVQQVEDLRQTLSKKE--QQAAR------------REDMFRGEIEDLQRRLQAA 624 (961)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 4 666666677778888888865554 12111 2347777778877776654
No 51
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.91 E-value=0.66 Score=48.02 Aligned_cols=39 Identities=26% Similarity=0.434 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003941 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 375 kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~ 413 (784)
+.-.+..+..|+..|.++..++.++..++..|+.-+-+.
T Consensus 49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~ 87 (312)
T PF00038_consen 49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDL 87 (312)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence 456677778888888888888888877777777665444
No 52
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=96.86 E-value=1.3 Score=50.52 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhhhhhHHHhHHHHH
Q 003941 231 RQLRMELEQQRNKFADVQLKLQEEQ 255 (784)
Q Consensus 231 ~~l~~el~~~~~k~~~~~~~lqee~ 255 (784)
-+.-.||+.-+....++.++|+.-+
T Consensus 58 ~~~l~ELe~akr~veel~~kLe~~~ 82 (522)
T PF05701_consen 58 AQALSELESAKRTVEELKLKLEKAQ 82 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567777777777777776443
No 53
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.73 E-value=2.2 Score=51.26 Aligned_cols=22 Identities=41% Similarity=0.596 Sum_probs=10.2
Q ss_pred hHHHHHHHHHHHhhhHHhHhHh
Q 003941 72 EIERYKAEIKRLQESEAEIKAL 93 (784)
Q Consensus 72 eie~ykaei~~lq~seaeikal 93 (784)
.+.+....+++|++-..+|.-+
T Consensus 282 ~~~~~~~~~~~L~~~~~e~~~~ 303 (908)
T COG0419 282 LLEELEEKIERLEELEREIEEL 303 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555544444433
No 54
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.71 E-value=2.3 Score=51.42 Aligned_cols=86 Identities=20% Similarity=0.307 Sum_probs=50.3
Q ss_pred HhHHHHHHHHH---HHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhc
Q 003941 225 AYESQTRQLRM---ELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELN 301 (784)
Q Consensus 225 ~~~~~i~~l~~---el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~ 301 (784)
.|+.||+.|.. +||-+..++.+.--.+|+ +|+.-+..-+-+.-+..++-.||.+|.-+|-+.-.+|-
T Consensus 103 ~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~----------d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~ 172 (1265)
T KOG0976|consen 103 HHESQIRILQNKCLRLEMEKQKLQDTIQGAQD----------DKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLH 172 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 45555555542 344444444444444444 44444444455566788888999999999988887774
Q ss_pred ccccCCcchHHHHHHHHHHH
Q 003941 302 RREDGDANDVVENLKRVVAT 321 (784)
Q Consensus 302 ~~e~e~~~~~~~sLk~~~~~ 321 (784)
. -.+...+...++++.++.
T Consensus 173 n-k~~~lt~~~~q~~tkl~e 191 (1265)
T KOG0976|consen 173 D-KNEELNEFNMEFQTKLAE 191 (1265)
T ss_pred h-hhhHHhHHHHHHHHHHHH
Confidence 3 334444555555554443
No 55
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.62 E-value=1 Score=46.12 Aligned_cols=203 Identities=20% Similarity=0.250 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003941 376 EEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAK 455 (784)
Q Consensus 376 Eeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~ 455 (784)
++.+..+..+...|++.....+++..|+..|.+.+--.++ +-++.++- +.+..+.++.........++.++.-=..
T Consensus 11 d~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~-~le~~eer---L~~~~~kL~~~e~~~de~er~~k~lE~r 86 (237)
T PF00261_consen 11 DEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEE-ELERAEER---LEEATEKLEEAEKRADESERARKVLENR 86 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHCC---CCHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4455567788888999999999999999999999777664 22233321 2233334555566666666666642111
Q ss_pred HH--HHhhh-chHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 003941 456 QE--EFKMM-NHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEY 532 (784)
Q Consensus 456 qe--elk~~-n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~ 532 (784)
.. +-++- -...+..++...++.-.++..+...+......|...-. -.+.++..+..+.+++..+...
T Consensus 87 ~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEe----------R~e~~E~ki~eLE~el~~~~~~ 156 (237)
T PF00261_consen 87 EQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEE----------RAEAAESKIKELEEELKSVGNN 156 (237)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhchhHHHHHHHHHHHHHH
Confidence 00 00000 01122222233333333333332222221112222111 1233444444455555555544
Q ss_pred HHHhhhHH-------HHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhc
Q 003941 533 LKNADQRA-------EVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRM 592 (784)
Q Consensus 533 Lk~a~q~i-------e~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~m 592 (784)
|+.....- +.....-..+..+|..++.....+...|.+|+..+..|...|...-......
T Consensus 157 lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~ 223 (237)
T PF00261_consen 157 LKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKV 223 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433332 1111111123456777888888888888888888888888887666555443
No 56
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.55 E-value=0.0027 Score=73.31 Aligned_cols=166 Identities=20% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHhcccccCC-------cc-----hHHHHHHHHHHH---HHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 282 MRKELNGKLSELRRLQMELNRREDGD-------AN-----DVVENLKRVVAT---LEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 282 ~~~el~ek~sei~rlq~~l~~~e~e~-------~~-----~~~~sLk~~~~~---L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
|.+++.+.+..|+.|+.++.+...+- .+ .-+.+|++-+.. ++.+..++..++..|+..+....+.
T Consensus 248 i~k~l~~ql~~i~~LE~en~~l~~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~sl 327 (722)
T PF05557_consen 248 INKELKEQLAHIRELEKENRRLREELKHLRQSQENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWESL 327 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666555443331 11 123344444433 3466667777788888888777655
Q ss_pred CCCcc--CCCCCCCCcccC-CCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 003941 347 SNEKI--FPDASEYPSRLD-GKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDE 423 (784)
Q Consensus 347 ~~~k~--~~da~e~~~r~~-s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmde 423 (784)
..+.- +....++.+..- -..+...-.-..-.+...+..|+..+.++..++..+..++..|+..+..... .-..++.
T Consensus 328 ~~~~~~~~~sPe~l~~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~-~~~RLer 406 (722)
T PF05557_consen 328 LQDIGLEFDSPEDLARALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKK-LIRRLER 406 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 44321 111122222221 0111111112345567777777777777777777777777777776443221 1112222
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003941 424 DSKIIEELRENNEYQRAQILHLENVLKQ 451 (784)
Q Consensus 424 d~k~IeELreenE~~R~~Is~lEraLK~ 451 (784)
. .--+..+++++|+++..++.....
T Consensus 407 q---~~L~~kE~d~LR~~L~syd~e~~~ 431 (722)
T PF05557_consen 407 Q---KALATKERDYLRAQLKSYDKEETT 431 (722)
T ss_dssp ----------------------------
T ss_pred H---HHHHHHHHHHHHHHHHHhhhhhcc
Confidence 1 122234799999999988876644
No 57
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.54 E-value=3.3 Score=51.10 Aligned_cols=97 Identities=24% Similarity=0.250 Sum_probs=67.2
Q ss_pred hhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHH
Q 003941 243 KFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATL 322 (784)
Q Consensus 243 k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L 322 (784)
++..+|.+|+.-++-=.-+-.||.+|+ -++.-...|..+|+-|.-++--++-.+...+.+-..+.++.+...++.+
T Consensus 678 ~l~~~~~~~~~~q~el~~le~eL~~le----~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~ 753 (1174)
T KOG0933|consen 678 KLKQAQKELRAIQKELEALERELKSLE----AQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEES 753 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHH
Confidence 445556666655555555666666664 3566677899999999888887777777666665567777777777777
Q ss_pred HHhhhhhHhhHHHHHHHHHHh
Q 003941 323 EKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 323 ~kEn~tlk~~~~eL~a~L~~~ 343 (784)
+.+.-+....+..-..++.+.
T Consensus 754 ~~~Ike~~~~~k~~~~~i~~l 774 (1174)
T KOG0933|consen 754 EQQIKEKERALKKCEDKISTL 774 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777666666666666554
No 58
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.47 E-value=0.85 Score=52.81 Aligned_cols=120 Identities=23% Similarity=0.269 Sum_probs=65.2
Q ss_pred chHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHH
Q 003941 309 NDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKD 388 (784)
Q Consensus 309 ~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~e 388 (784)
.+.++.|-.-|+.++ .|+.|-+.|+..|..+|.+.+.-.. .-+.=.+..+.++++.
T Consensus 45 ~~LNDRLA~YIekVR----~LEaqN~~L~~di~~lr~~~~~~ts--------------------~ik~~ye~El~~ar~~ 100 (546)
T KOG0977|consen 45 QELNDRLAVYIEKVR----FLEAQNRKLEHDINLLRGVVGRETS--------------------GIKAKYEAELATARKL 100 (546)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhccCCCc--------------------chhHHhhhhHHHHHHH
Confidence 345555555555433 2444444555555555555433211 1233445557788888
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH-------HHHhh---hhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 389 LKETCSERDKALQELTRLKQHL-------IEKAQ---EESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 452 (784)
Q Consensus 389 L~e~~~E~dKa~kEL~RLRqHL-------Le~E~---Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~ 452 (784)
|.++..++.++.+|+.+|+--+ .+.+. .+.++.+.....|.++..+..+.+..|..+|-+++--
T Consensus 101 l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 101 LDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887777766443 33322 1234444444555666555556666565555555443
No 59
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.46 E-value=3 Score=50.55 Aligned_cols=65 Identities=20% Similarity=0.201 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcccccCCcc--hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHH
Q 003941 278 EITEMRKELNGKLSELRRLQMELNRREDGDAN--DVVENLKRVVATLEKENNSLKMEKTELVAALEK 342 (784)
Q Consensus 278 ~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~--~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~ 342 (784)
.++.+...|-++.+.|+-||..+.++|.+-.- ++...++..+..-+-|..++....-+|+.+|..
T Consensus 93 dv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsA 159 (1265)
T KOG0976|consen 93 DVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSA 159 (1265)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 45666777889999999999999999887544 455555554444444444444444444444443
No 60
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.40 E-value=3.3 Score=49.44 Aligned_cols=45 Identities=31% Similarity=0.270 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHhhhhhhhhh
Q 003941 378 MEQSLQKLEKDLKETCSERD-KALQELTRLKQHLIEKAQEESEKMD 422 (784)
Q Consensus 378 me~sl~~L~~eL~e~~~E~d-Ka~kEL~RLRqHLLe~E~Ee~ekmd 422 (784)
|+.-++.++.-+++..-+.+ |+..|+.-|+||++++..++-.++.
T Consensus 376 ~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~ 421 (698)
T KOG0978|consen 376 NELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIR 421 (698)
T ss_pred HHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777788866666 9999999999999999887654443
No 61
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.40 E-value=3.9 Score=50.63 Aligned_cols=38 Identities=18% Similarity=0.212 Sum_probs=30.2
Q ss_pred chHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 309 NDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 309 ~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
..++++-+..|..++++...++.++.+++..|..|..+
T Consensus 220 ~~~~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~~~~ 257 (1074)
T KOG0250|consen 220 MESLDHAKELIDLKEEEIKNLKKKIKEEEEKLDNLEQL 257 (1074)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888888888888877443
No 62
>PF13514 AAA_27: AAA domain
Probab=96.33 E-value=1.3 Score=54.08 Aligned_cols=288 Identities=20% Similarity=0.243 Sum_probs=132.1
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCC
Q 003941 275 TSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPD 354 (784)
Q Consensus 275 ts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~d 354 (784)
....+|...+++.+-..+|+..+.....+.. ....++.++..+..|+.+...+..+...|+.-+ ...|.
T Consensus 148 ~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~--l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~---------~~~p~ 216 (1111)
T PF13514_consen 148 RKPEINQALKELKELERELREAEVRAAEYQE--LQQALEEAEEELEELRAELKELRAELRRLERLR---------RAWPL 216 (1111)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhccHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhHH
Confidence 3446677777777766666666554433221 112333334444444444444443333332211 11111
Q ss_pred CCCCCcccC--CCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHH
Q 003941 355 ASEYPSRLD--GKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELR 432 (784)
Q Consensus 355 a~e~~~r~~--s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELr 432 (784)
..+...-.. ..+.....||. +-...++.+...+.....+......++.+|+..+-.....+. -.+ ....|+.|.
T Consensus 217 ~~~~~~l~~~l~~l~~~~~~p~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~-ll~-~~~~I~~L~ 292 (1111)
T PF13514_consen 217 LAELQQLEAELAELGEVPDFPE--DGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEE-LLA-HAAEIEALE 292 (1111)
T ss_pred HHHHHHHHHHHHhcCCcCCCCh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH-HHh-hHHHHHHHH
Confidence 111111110 11222334553 334457888888888888899999999998887544432111 111 123455555
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhh--hhhHhhH---HHHHHHHHH
Q 003941 433 ENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAK--NVELLNL---QTALGQYFA 507 (784)
Q Consensus 433 eenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAK--nvEl~NL---QtALgqfqA 507 (784)
+..-.++....++ ...+.++..+...+..++..|-.- ...+..+ -.++.++..
T Consensus 293 ~~~~~~~~~~~dl----------------------~~~~~e~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~i~~ 350 (1111)
T PF13514_consen 293 EQRGEYRKARQDL----------------------PRLEAELAELEAELRALLAQLGPDWDEEDLEALDPSLAARERIRE 350 (1111)
T ss_pred HHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHhcCCCcccchhhhcCCCHHHHHHHHH
Confidence 4321222211111 111222222222333333222200 0000010 123333333
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhh--hHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHH
Q 003941 508 EIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRS--EKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQS 585 (784)
Q Consensus 508 E~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~k--EKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqs 585 (784)
-......+...++.++..+......|.......+..-. .-+.+...+..+. .+.++...+..+...+..+.+.|..+
T Consensus 351 l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~~~-~~~d~~~~~~~~~~~~~~~~~~l~~~ 429 (1111)
T PF13514_consen 351 LLQEREQLEQALAQARRELEEAERELEQLQAELAALPAPPDPEALRAALEAAQ-RLGDLEARLQEAEQALEAAERRLAAA 429 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCChHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666666655555555555444333211 0011122222222 22345557777888899999999999
Q ss_pred HHHHhhccCCcchhh
Q 003941 586 MTRLNRMSVDSDFLV 600 (784)
Q Consensus 586 l~RL~~ms~dsD~~V 600 (784)
+.+|..-+.+-+.+.
T Consensus 430 l~~L~~w~~~~~~l~ 444 (1111)
T PF13514_consen 430 LAALGPWSGDLDALA 444 (1111)
T ss_pred HHhcCCCCCChHHHh
Confidence 999985444444443
No 63
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.30 E-value=1.3 Score=52.43 Aligned_cols=224 Identities=21% Similarity=0.288 Sum_probs=122.7
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhc
Q 003941 222 ERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELN 301 (784)
Q Consensus 222 ~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~ 301 (784)
+...+|.+||+||-+|..-|.-..++..++.--..-...++.+|..|+. +...||.++.
T Consensus 419 a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~---------------------ene~Lq~Kl~ 477 (697)
T PF09726_consen 419 AISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQ---------------------ENEQLQNKLQ 477 (697)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHH---------------------HHHHHHHHHH
Confidence 3447999999999999988877776666654333333445555554443 3334444443
Q ss_pred ccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCc----cCCCCCCCCcccC-CCCccCCCCCchh
Q 003941 302 RREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEK----IFPDASEYPSRLD-GKMVSSESFPGKE 376 (784)
Q Consensus 302 ~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k----~~~da~e~~~r~~-s~~~~~~sf~~kE 376 (784)
.-. -..++=|.-+.+||+.......++..||+.|..-|+.--.. -++-+-...+|.. .+.-+ ...-
T Consensus 478 ~L~-----~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r----~r~~ 548 (697)
T PF09726_consen 478 NLV-----QARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCR----QRRR 548 (697)
T ss_pred HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHH----HHHH
Confidence 311 12333344455566666666666666666666555440000 0000000001111 11111 0345
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 003941 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQ 456 (784)
Q Consensus 377 eme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~q 456 (784)
+||..+..|+.||+........+..|+.-||.+- +| .++.++.|.-.+-.+++.-.|||..|..+.---
T Consensus 549 ~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~--~e---------~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriK 617 (697)
T PF09726_consen 549 QLESELKKLRRELKQKEEQIRELESELQELRKYE--KE---------SEKDTEVLMSALSAMQDKNQHLENSLSAETRIK 617 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hh---------hhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 7788888888888888888888888887777652 11 122345666666677888889998888753322
Q ss_pred HHH-hhh---------chHHHHhhHHHHHhhhhhHHHhHH
Q 003941 457 EEF-KMM---------NHSEIQKSKEIIDGLNNKLANCMR 486 (784)
Q Consensus 457 eel-k~~---------n~~E~~~ske~iedL~~~L~~~me 486 (784)
.+| .-+ .+..+..=..+|.+||++++..|.
T Consensus 618 ldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~~~a 657 (697)
T PF09726_consen 618 LDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQLLA 657 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 221 111 112333344567778877777664
No 64
>PLN03188 kinesin-12 family protein; Provisional
Probab=96.11 E-value=6.2 Score=49.83 Aligned_cols=117 Identities=24% Similarity=0.229 Sum_probs=68.2
Q ss_pred hhhHHhhHHhhh--chhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhh-------------chHHHHHHhhc
Q 003941 204 KEKELADLLEEK--NRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRL-------------NESFQDELKSL 268 (784)
Q Consensus 204 ~~~e~~d~le~~--~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~-------------n~~fqe~l~~l 268 (784)
-+|-||..+... .--+.+.||+--.|..-|-+|...||+=-+.|-. -.|-|+ -+++-||+-+|
T Consensus 868 ~~kvl~~a~~re~~le~~c~~qa~~i~ql~~lv~qyk~e~~~~~~~~~--~~~~ki~~l~~~~dg~l~~~~~~~~~~~~~ 945 (1320)
T PLN03188 868 VEKVLAGAIRREMALEEFCTKQASEITQLNRLVQQYKHERECNAIIGQ--TREDKIIRLESLMDGVLSKEDFLEEELASL 945 (1320)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhhhhhhHHHhh--hhhhhHHHHhhhcccccchhhhhhhhhhhh
Confidence 345566665444 4556788888433333344455555554444332 223333 24555666665
Q ss_pred ccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHH
Q 003941 269 KMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLE 323 (784)
Q Consensus 269 k~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~ 323 (784)
|+.+|.-.++-.-|=|+---.-||+|+|.||..-.+--+.+--+-|..+|..|+
T Consensus 946 -~~~~~~~~~~y~~~p~~~~~~~e~~~~~~e~~~~~~~~d~~ErEvll~eI~dlr 999 (1320)
T PLN03188 946 -MHEHKLLKEKYENHPEVLRTKIELKRVQDELEHYRNFYDMGEREVLLEEIQDLR 999 (1320)
T ss_pred -hhhHHHHHHHhhcChhhhhhhHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHH
Confidence 677787777777777777777799999999986333332233344444555554
No 65
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=96.09 E-value=0.0015 Score=77.29 Aligned_cols=40 Identities=30% Similarity=0.462 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003941 374 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 374 ~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 414 (784)
.+++|...|..+...|...-..+-++.-+|..+|+. ++.+
T Consensus 469 e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e-~er~ 508 (859)
T PF01576_consen 469 EKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQE-IERE 508 (859)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 456677777777777777777788888889999887 5554
No 66
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.07 E-value=0.81 Score=54.93 Aligned_cols=48 Identities=33% Similarity=0.452 Sum_probs=34.3
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003941 407 KQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEE 458 (784)
Q Consensus 407 RqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qee 458 (784)
||+-|+.+-||+.|-+-+.+ |-.|+++|.||. .+||++-.++|-.|.+
T Consensus 379 rQReiE~qrEEerkkeie~r--Eaar~ElEkqRq--lewErar~qem~~Qk~ 426 (1118)
T KOG1029|consen 379 RQREIERQREEERKKEIERR--EAAREELEKQRQ--LEWERARRQEMLNQKN 426 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHHhhhh
Confidence 67778887777666555433 334568888888 8999999888887743
No 67
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.02 E-value=6.6 Score=49.29 Aligned_cols=88 Identities=24% Similarity=0.390 Sum_probs=40.2
Q ss_pred hhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHH----HHHHHHhcccccCCcc--hHHHHHHHHHHHHHHhhhhh
Q 003941 256 RLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSEL----RRLQMELNRREDGDAN--DVVENLKRVVATLEKENNSL 329 (784)
Q Consensus 256 k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei----~rlq~~l~~~e~e~~~--~~~~sLk~~~~~L~kEn~tl 329 (784)
+.++.++++..-+.+......-.....+.++.++..+. .-++.+++..+.++.. ..++++.+-+.-|+|+....
T Consensus 345 ~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~ 424 (1293)
T KOG0996|consen 345 KIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKA 424 (1293)
T ss_pred HHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444443333333333333344444443333 3445555544444444 25555555555555555555
Q ss_pred HhhHHHHHHHHHHh
Q 003941 330 KMEKTELVAALEKN 343 (784)
Q Consensus 330 k~~~~eL~a~L~~~ 343 (784)
+.++.+++..++..
T Consensus 425 ~~~~~e~e~~pe~~ 438 (1293)
T KOG0996|consen 425 RRKKSELEKAPEKA 438 (1293)
T ss_pred HhhHHHHHhCchhh
Confidence 55555555444443
No 68
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.00 E-value=3.3 Score=50.06 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHH
Q 003941 315 LKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCS 394 (784)
Q Consensus 315 Lk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~ 394 (784)
|+.-..+|.-|..||--++..|..+|.-.|--.+....-- ..+++ +-|-|-+.+..|...|+|++.
T Consensus 435 ~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~i---------e~~~~-----q~e~~isei~qlqarikE~q~ 500 (1118)
T KOG1029|consen 435 LNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEI---------EEVTK-----QRELMISEIDQLQARIKELQE 500 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHH---------HHhhh-----HHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777777777777766654432220000 01221 345555666777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 003941 395 ERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 395 E~dKa~kEL~RLRqHLLe~E~ 415 (784)
-.-++..|-.-|-..|..+..
T Consensus 501 kl~~l~~Ekq~l~~qlkq~q~ 521 (1118)
T KOG1029|consen 501 KLQKLAPEKQELNHQLKQKQS 521 (1118)
T ss_pred HHHhhhhHHHHHHHHHHHhhh
Confidence 777777777777777666653
No 69
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.94 E-value=5.1 Score=47.31 Aligned_cols=64 Identities=16% Similarity=0.275 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHhccc-----------ccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHH
Q 003941 277 IEITEMRKELNGKLSELRRLQMELNRR-----------EDGDANDVVENLKRVVATLEKENNSLKMEKTELVAAL 340 (784)
Q Consensus 277 ~~~~~~~~el~ek~sei~rlq~~l~~~-----------e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L 340 (784)
.++..|..||+++..+|..-|...--. ....+-+....+.-.|..-+-|.+.|..--..-++++
T Consensus 15 ~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~LtkRsk~aE~af 89 (629)
T KOG0963|consen 15 FDLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNLTKRSKFAEAAF 89 (629)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 457788899999988887766543111 1222334555555566666666666554444444443
No 70
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.86 E-value=2.4 Score=44.72 Aligned_cols=34 Identities=29% Similarity=0.281 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003941 381 SLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 381 sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 414 (784)
.+..|.-.....+.+.+|+.-|+.+++..+.+.+
T Consensus 18 e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~ 51 (239)
T COG1579 18 EKDRLEPRIKEIRKALKKAKAELEALNKALEALE 51 (239)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555556666666666666655554
No 71
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=95.85 E-value=0.0023 Score=75.89 Aligned_cols=37 Identities=38% Similarity=0.513 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhh
Q 003941 309 NDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 309 ~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~ 345 (784)
++-+++|++.-..|+|+.+.|..+...|.+.|+..-+
T Consensus 137 ~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k 173 (859)
T PF01576_consen 137 NEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQK 173 (859)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3466677777777777777777777777777766543
No 72
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=95.84 E-value=2.6 Score=53.12 Aligned_cols=73 Identities=14% Similarity=0.136 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh-----hhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003941 381 SLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQE-----ESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTL 453 (784)
Q Consensus 381 sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~E-----e~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~ 453 (784)
.+..|..+|.++..+++.+..++..|.+++-....+ .+..+......+...+......+..+...+..+....
T Consensus 743 ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~ 820 (1353)
T TIGR02680 743 RIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAA 820 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666666666665554444332 1233444444455555555555555555555555543
No 73
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.81 E-value=7.6 Score=48.33 Aligned_cols=43 Identities=26% Similarity=0.275 Sum_probs=31.1
Q ss_pred ccccchhhhh-hhhHHHHHhhhcCCCccCCCCcccCCCCCCCCCcc
Q 003941 113 GEYGLLKQNL-DATNAALNAFRNGNSKASSNGINIPKGSGDLSPSR 157 (784)
Q Consensus 113 ~engslk~nl-~~t~~al~~~r~~~~~~s~n~~~~~kg~~d~sp~r 157 (784)
.=|||=|-|| ||..-+|-+ ++.+.|++.+- +.|-|...+-|..
T Consensus 32 GPNGSGKSNlMDAISFVLGe-kss~LR~~~lk-dLIyg~~i~~~v~ 75 (1141)
T KOG0018|consen 32 GPNGSGKSNLMDAISFVLGE-KSSHLRVSHLK-DLIYGKPIRKPVT 75 (1141)
T ss_pred CCCCCchHHHHHHHHHHhcC-CCcccccchHH-HHhcCCccCCchh
Confidence 4599999996 577766655 66777777665 5677888877754
No 74
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.81 E-value=0.0024 Score=73.74 Aligned_cols=124 Identities=29% Similarity=0.400 Sum_probs=0.0
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhh---hHHHH
Q 003941 217 RSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNG---KLSEL 293 (784)
Q Consensus 217 ~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~e---k~sei 293 (784)
..++-.-+.+..++++|+.+|.+--.-..+...++++=.+-...++.+...|...- -++..++.||++ +-...
T Consensus 235 ~~~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A----~~a~~LrDElD~lR~~a~r~ 310 (713)
T PF05622_consen 235 QHLSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEA----REARALRDELDELREKADRA 310 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHHHHH
Confidence 33333345566778888888876555555555555555555555666655554432 356667776654 33344
Q ss_pred HHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 294 RRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 294 ~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
.+|+.++.+-... =.-+.-||+.++.|+..|..|-.++..|+..|...++.
T Consensus 311 ~klE~~ve~YKkK--Led~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~ 361 (713)
T PF05622_consen 311 DKLENEVEKYKKK--LEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARAL 361 (713)
T ss_dssp -----------------------------------------------------
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4555555443221 12477899999999999999999999999999887543
No 75
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.78 E-value=6.5 Score=48.12 Aligned_cols=218 Identities=22% Similarity=0.236 Sum_probs=101.3
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHhhhh-------hhhhhhhhHHHHHHHHhHHHHHHHH
Q 003941 374 GKEEMEQSLQKLEKDLKETCSERDK----ALQELTRLKQHLIEKAQEE-------SEKMDEDSKIIEELRENNEYQRAQI 442 (784)
Q Consensus 374 ~kEeme~sl~~L~~eL~e~~~E~dK----a~kEL~RLRqHLLe~E~Ee-------~ekmded~k~IeELreenE~~R~~I 442 (784)
++...+.+...+.+++..+.....+ +..=+..+++|+.+++-+= ++-+++.. -||.+.-..++.-
T Consensus 327 qkd~~~~~~~~~~~e~~~~~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e----qLr~elaql~a~r 402 (980)
T KOG0980|consen 327 QKDPRELQIEQLSREVAQLKAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE----QLRNELAQLLASR 402 (980)
T ss_pred cCChhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 4566677777777777666555443 3333556777776665311 13333332 2333333333444
Q ss_pred HHHHHHHH--HHHH-----HH---HHHhhhc---hHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHH
Q 003941 443 LHLENVLK--QTLA-----KQ---EEFKMMN---HSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEI 509 (784)
Q Consensus 443 s~lEraLK--~~~a-----~q---eelk~~n---~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~ 509 (784)
.++|++.. .++. .+ +.++-.. ..++.++...-.|.-++|...-.++.-...++.||.--|++.+.+.
T Consensus 403 ~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~ 482 (980)
T KOG0980|consen 403 TQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAA 482 (980)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444441 1111 00 1111111 1244444455555555555544455544556666665555554332
Q ss_pred -----------HHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHH
Q 003941 510 -----------EAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKL 578 (784)
Q Consensus 510 -----------EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kL 578 (784)
++-+.+++|++.+..+++.|...|+-..+... ..+..+...+.+-.+..+++..+. ++.+-+
T Consensus 483 ~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~qs~~---~~~~~l~~~l~~KD~~~~~~~~~~----~e~~~~ 555 (980)
T KOG0980|consen 483 GRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQSHN---NQLAQLEDLLKQKDRLAAELVARE----EEREAL 555 (980)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHHHHHHHHhhHHHHHHHHHHH----HHHHHH
Confidence 22367777777777777766655444333321 222222222222222222222221 222336
Q ss_pred HHHHHHHHHHHhhccCCcchhhhH
Q 003941 579 RLAVEQSMTRLNRMSVDSDFLVDR 602 (784)
Q Consensus 579 R~ALeqsl~RL~~ms~dsD~~VDR 602 (784)
|.-++.++..|.-.+.+++.--+.
T Consensus 556 ~~e~e~si~ql~l~~~~~~ea~~t 579 (980)
T KOG0980|consen 556 RLEAERSINQLELDSSASTEAGIT 579 (980)
T ss_pred HHHHHhhHHHhhcccccchHHHHH
Confidence 666666666666655545443333
No 76
>PRK09039 hypothetical protein; Validated
Probab=95.78 E-value=0.7 Score=50.13 Aligned_cols=55 Identities=27% Similarity=0.354 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHH--HhcccccCCcchHHHHHHHHHHHHHHhhhhhHhh
Q 003941 278 EITEMRKELNGKLSELRRLQM--ELNRREDGDANDVVENLKRVVATLEKENNSLKME 332 (784)
Q Consensus 278 ~~~~~~~el~ek~sei~rlq~--~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~ 332 (784)
+++....||++--++|..|=. .|.+....+....+..|+..+..+++++..|+..
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~ 103 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQAL 103 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544432 2222233333344555555555444444444433
No 77
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.73 E-value=5.9 Score=46.45 Aligned_cols=101 Identities=21% Similarity=0.304 Sum_probs=68.7
Q ss_pred HHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHH
Q 003941 318 VVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERD 397 (784)
Q Consensus 318 ~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~d 397 (784)
-++.|++...+|+.-.+...+.+.+|.. .+..|+.-|..|+.++.+--.|++
T Consensus 260 ~~eslre~~~~L~~D~nK~~~y~~~~~~----------------------------k~~~~~~~l~~l~~Eie~kEeE~e 311 (581)
T KOG0995|consen 260 KEESLREKKARLQDDVNKFQAYVSQMKS----------------------------KKQHMEKKLEMLKSEIEEKEEEIE 311 (581)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh----------------------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666667777777777611 467899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh---hhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003941 398 KALQELTRLKQHLIEKAQ---EESEKMDEDSKIIEELRENNEYQRAQILHLENVLK 450 (784)
Q Consensus 398 Ka~kEL~RLRqHLLe~E~---Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK 450 (784)
+..++.++||.. |+++. +|-+.|-.+ -++|..+++.+.-++..|-+.+.
T Consensus 312 ~lq~~~d~Lk~~-Ie~Q~iS~~dve~mn~E---r~~l~r~l~~i~~~~d~l~k~vw 363 (581)
T KOG0995|consen 312 KLQKENDELKKQ-IELQGISGEDVERMNLE---RNKLKRELNKIQSELDRLSKEVW 363 (581)
T ss_pred HHHHHHHHHHHH-HHhcCCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 77774 333444443 23444445455554554444433
No 78
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.70 E-value=6.1 Score=48.88 Aligned_cols=138 Identities=25% Similarity=0.285 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh--HHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDS--KIIEELRENNEYQRAQILHLENVLKQT 452 (784)
Q Consensus 375 kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~--k~IeELreenE~~R~~Is~lEraLK~~ 452 (784)
.+..+..++....+|+..+...++...+..-++.-|=-+..-+.++++... +..|.+- .|. -.|..
T Consensus 856 l~~~~~~~e~~~~el~~l~~~i~~~~a~~~~~~~~lE~~~~lek~~~~~~~~dKe~Ek~~-----~rk------~~Ll~- 923 (1200)
T KOG0964|consen 856 LESEEKRVEAAILELKTLQDSIDKKKAEIKEIKKELEKAKNLEKEKKDNINFDKELEKLV-----RRK------HMLLK- 923 (1200)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH-----HHH------HHHHH-
Confidence 445556666677777777777778777777777665444444445555521 1111110 011 11111
Q ss_pred HHHHHH----Hhhhc----hHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHH-HHHHHHHHHHHHhhhhHHHHHHHH
Q 003941 453 LAKQEE----FKMMN----HSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQ-TALGQYFAEIEAKGHLERELALAR 523 (784)
Q Consensus 453 ~a~qee----lk~~n----~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQ-tALgqfqAE~EA~ErLe~ELa~ar 523 (784)
++++ ++.+- ++-..-..--++.|-++|..|.+.+.- +.|.+ .||.||-+=.|-+
T Consensus 924 --KreE~~ekIr~lG~Lp~daf~ky~~~~~~el~kkL~~~neelk~----ys~VNKkAldQf~nfseQr----------- 986 (1200)
T KOG0964|consen 924 --KREECCEKIRELGVLPEDAFEKYQDKKSKELMKKLHRCNEELKG----YSNVNKKALDQFVNFSEQR----------- 986 (1200)
T ss_pred --HHHHHHHHHHhcCCCchHHHHHhccCCHHHHHHHHHHHHHHHhh----cchhhHHHHHHHHHHHHHH-----------
Confidence 2222 11111 111111122244566778888877765 33443 6999998776443
Q ss_pred HHHHHHHHHHHHhhhHHH
Q 003941 524 EESAKLSEYLKNADQRAE 541 (784)
Q Consensus 524 ee~a~Ls~~Lk~a~q~ie 541 (784)
+++.+-.+.|+..+..|.
T Consensus 987 e~L~~R~eELd~s~~sI~ 1004 (1200)
T KOG0964|consen 987 ESLKKRQEELDRSKDSIL 1004 (1200)
T ss_pred HHHHHHHHHhccchhHHH
Confidence 344444445555555553
No 79
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=95.66 E-value=5.2 Score=45.36 Aligned_cols=132 Identities=20% Similarity=0.224 Sum_probs=71.2
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003941 374 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTL 453 (784)
Q Consensus 374 ~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~ 453 (784)
.|+++|+.-+....||..++.|+.-..+|+..+|+.++--.. +--...++ -..|+.++...-.+.-+|+..+---.
T Consensus 96 ~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ-~lar~t~Q---~q~lqtrl~~l~~qr~ql~aq~qsl~ 171 (499)
T COG4372 96 EKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQ-ELARLTKQ---AQDLQTRLKTLAEQRRQLEAQAQSLQ 171 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666667777777777777777777777776543321 11111111 11222222222222222222111111
Q ss_pred HHHHHHh----h--hchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHH
Q 003941 454 AKQEEFK----M--MNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEI 509 (784)
Q Consensus 454 a~qeelk----~--~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~ 509 (784)
+.+-+|. . ....++..--++|+.--+.|++--+++.+.+.|++|++.|+.|...++
T Consensus 172 a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~q~i 233 (499)
T COG4372 172 ASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANAAQARTEELARRAAAAQQTAQAI 233 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 0 011122222345777778888888999999999999999999988876
No 80
>PF01465 GRIP: GRIP domain; InterPro: IPR000237 The GRIP (golgin-97, RanBP2alpha,Imh1p and p230/golgin-245) domain [, , ] is found in many large coiled-coil proteins. It has been shown to be sufficient for targeting to the Golgi []. The GRIP domain contains a completely conserved tyrosine residue.; GO: 0005515 protein binding, 0000042 protein targeting to Golgi; PDB: 1R4A_H 1UPT_B.
Probab=95.64 E-value=0.025 Score=45.47 Aligned_cols=41 Identities=22% Similarity=0.496 Sum_probs=32.3
Q ss_pred hhhHHHHHHHHHHHHhcCC---chHHHHHHHHhcCCCHHHHHHh
Q 003941 599 LVDRRIVIKLLVTYFQRNH---SKEVLDLMVRMLGFSDEDKQRI 639 (784)
Q Consensus 599 ~VDRRIVtkLLLTYf~R~~---sKEVL~LMArMLgFSDEEK~ri 639 (784)
.+|---+.|+++.||+... .+.++-.||+||+||++|+++|
T Consensus 2 ~~~~eYLKNvl~~fl~~~~~~~~~~llpvi~tlL~fs~~e~~~i 45 (46)
T PF01465_consen 2 GINLEYLKNVLLQFLESREPSEREQLLPVIATLLKFSPEEKQKI 45 (46)
T ss_dssp -HHHHHHHHHHHHHHTTSS---HHHHHHHHHHHTT--HHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHCCCHHHHHhh
Confidence 3566678999999999665 3369999999999999999886
No 81
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=95.58 E-value=2.6 Score=47.83 Aligned_cols=57 Identities=23% Similarity=0.323 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHH
Q 003941 496 LNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILV 552 (784)
Q Consensus 496 ~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~ 552 (784)
.--+.|+..|....-...-+...+..++.......++|..|++.+-.....|+.++.
T Consensus 200 ~~~~~A~~~~~~~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~ 256 (511)
T PF09787_consen 200 EERPKALRHYIEYLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIE 256 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 333445555555554444444555555555555555566666554444444444444
No 82
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.54 E-value=9.3 Score=47.48 Aligned_cols=70 Identities=19% Similarity=0.215 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHH
Q 003941 435 NEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEA 511 (784)
Q Consensus 435 nE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA 511 (784)
...+...|+.+|+.++..-+.++ .++.++..+|.-+++++.+.-...+.+-.+..+||--.++..-|+..
T Consensus 764 ~k~~~~~i~~lE~~~~d~~~~re-------~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~ 833 (1174)
T KOG0933|consen 764 LKKCEDKISTLEKKMKDAKANRE-------RRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISS 833 (1174)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666555443 34445555555666666655555555555555555555555544433
No 83
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=95.54 E-value=3.6 Score=47.24 Aligned_cols=150 Identities=21% Similarity=0.375 Sum_probs=102.2
Q ss_pred HHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhH
Q 003941 251 LQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLK 330 (784)
Q Consensus 251 lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk 330 (784)
|+|.--+|+- |+.||-+-.|--+-|-.|+-.=----..++.|||..++.+ -.-|.+.-||+-|+.|=..+-...
T Consensus 309 leedmaLNEv----L~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQq--vfvDiinkLk~niEeLIedKY~vi 382 (527)
T PF15066_consen 309 LEEDMALNEV----LQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQ--VFVDIINKLKENIEELIEDKYRVI 382 (527)
T ss_pred cHHHHHHHHH----HHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHhHhHhh
Confidence 3444444443 4456666666666666555432223345778999998743 334778888999999988888888
Q ss_pred hhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 331 MEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 331 ~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHL 410 (784)
.++++++-.|..+.. .+..-++.|.|++.|.+-++-||.+++.+-
T Consensus 383 LEKnd~~k~lqnLqe-----------------------------------~la~tqk~LqEsr~eKetLqlelkK~k~ny 427 (527)
T PF15066_consen 383 LEKNDIEKTLQNLQE-----------------------------------ALANTQKHLQESRNEKETLQLELKKIKANY 427 (527)
T ss_pred hhhhhHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHhhhH
Confidence 888887776665532 256667889999999999999999999999
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 411 IEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 452 (784)
Q Consensus 411 Le~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~ 452 (784)
+..++ +-+.|+.+.+.++-. -..++++|-+.
T Consensus 428 v~LQE----------ry~~eiQqKnksvsq-clEmdk~LskK 458 (527)
T PF15066_consen 428 VHLQE----------RYMTEIQQKNKSVSQ-CLEMDKTLSKK 458 (527)
T ss_pred HHHHH----------HHHHHHHHhhhHHHH-HHHHHHHhhhh
Confidence 99973 334455555555444 35677777654
No 84
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.46 E-value=3.4 Score=45.09 Aligned_cols=137 Identities=21% Similarity=0.231 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003941 382 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKM 461 (784)
Q Consensus 382 l~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~ 461 (784)
+..|.+-|+.+..|...+..|..+|+.-....|+.++ .+|.+--.++-....+|..|...|........
T Consensus 162 le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEq-------qLv~dcv~QL~~An~qia~LseELa~k~Ee~~---- 230 (306)
T PF04849_consen 162 LEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQ-------QLVLDCVKQLSEANQQIASLSEELARKTEENR---- 230 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHH-------HHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH----
Confidence 5677888888888999999999999988776664333 12222222233344556666555554322111
Q ss_pred hchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhH
Q 003941 462 MNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQR 539 (784)
Q Consensus 462 ~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ 539 (784)
-...||..+-.+|-||.+++..++ +|..+|+.-|. +..++...|..||+-+++..+.....|.+|+..
T Consensus 231 rQQEEIt~LlsqivdlQ~r~k~~~-------~EnEeL~q~L~---~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEE 298 (306)
T PF04849_consen 231 RQQEEITSLLSQIVDLQQRCKQLA-------AENEELQQHLQ---ASKESQRQLQAELQELQDKYAECMAMLHEAQEE 298 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123445555555555544444433 23344554443 335555555555555555555444444444433
No 85
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.45 E-value=6.2 Score=44.82 Aligned_cols=87 Identities=25% Similarity=0.366 Sum_probs=60.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCC
Q 003941 279 ITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEY 358 (784)
Q Consensus 279 ~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~ 358 (784)
...+++++.++..+|+.-+ +..+.|..+|..++++.++++.++.+....|+.++.-
T Consensus 40 l~q~q~ei~~~~~~i~~~~------------~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~------------ 95 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQ------------DQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQ------------ 95 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh------------
Confidence 3455555555555555443 4456788888899999888888888888888777332
Q ss_pred CcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003941 359 PSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQ 408 (784)
Q Consensus 359 ~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRq 408 (784)
..+++..++.|+..- +..+.++..-|..+-+
T Consensus 96 ----------------I~~~~~~l~~l~~q~---r~qr~~La~~L~A~~r 126 (420)
T COG4942 96 ----------------IADLNARLNALEVQE---REQRRRLAEQLAALQR 126 (420)
T ss_pred ----------------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 556766677766555 4557777777777776
No 86
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.43 E-value=2.8 Score=45.55 Aligned_cols=216 Identities=24% Similarity=0.326 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCC
Q 003941 277 IEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDAS 356 (784)
Q Consensus 277 ~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~ 356 (784)
.+..+.++||+.++++++..-.+|+..-- +--+-+.+|+..-..+-.+..+|+..++++++.+..++.-.- ++.-+..
T Consensus 23 ~e~~ekR~El~~~~~~~~ekRdeln~kvr-E~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~-~l~e~~~ 100 (294)
T COG1340 23 EELKEKRDELRKEASELAEKRDELNAKVR-ELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYR-ELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Confidence 34455556666666666666666655221 112345556666666666777777777777777776543311 1111111
Q ss_pred CCCcccCCCCccCCCCCchhHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHhh--hhhhhhhhhhHHHHHH
Q 003941 357 EYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLK---ETCSERDKALQELTRLKQHLIEKAQ--EESEKMDEDSKIIEEL 431 (784)
Q Consensus 357 e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~---e~~~E~dKa~kEL~RLRqHLLe~E~--Ee~ekmded~k~IeEL 431 (784)
... ..-+-.+.++.-++.|+.... =+-.+=.+..+.+.+|+..|-+... +..++..+--..|+++
T Consensus 101 ~~~----------~~~~~~~~ler~i~~Le~~~~T~~L~~e~E~~lvq~I~~L~k~le~~~k~~e~~~~~~el~aei~~l 170 (294)
T COG1340 101 EFN----------LGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDEL 170 (294)
T ss_pred hhh----------ccCCCHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 000123344444444443322 2234456788889998888776653 1222333222233333
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHH
Q 003941 432 RENNEYQRAQILHLENVLKQTLAKQEEFKMMN-HSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEI 509 (784)
Q Consensus 432 reenE~~R~~Is~lEraLK~~~a~qeelk~~n-~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~ 509 (784)
+....-+...|..|=...- + --..|+. -.+...++..++.+..++......++..+.++-|+|.=|-.|.-.+
T Consensus 171 k~~~~e~~eki~~la~eaq-e----~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~elre~~k~i 244 (294)
T COG1340 171 KKKAREIHEKIQELANEAQ-E----YHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKI 244 (294)
T ss_pred HHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3333222222222111100 0 0011111 2466667778888888888888888888888888888877776555
No 87
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=95.40 E-value=12 Score=47.66 Aligned_cols=216 Identities=20% Similarity=0.225 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003941 381 SLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEEL---RENNEYQRAQILHLENVLKQTLAKQE 457 (784)
Q Consensus 381 sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeEL---reenE~~R~~Is~lEraLK~~~a~qe 457 (784)
.++.|+.++.+.+.+......++..+.....-+..+..+.+.+..++..+- .....--+++|-+|...|+..+.-..
T Consensus 879 ~~~qle~~~~~l~e~~~~~~s~~~e~~~~~~~~~~~l~e~~s~~e~~k~~~~~~~~~aqk~~~~ine~~s~l~~~~~~~~ 958 (1294)
T KOG0962|consen 879 RLQQLEEDIEELSEEITRLDSKVKELLERIQPLKVELEEAQSEKEELKNERNTSEKLAQKKRNDINEKVSLLHQIYKLNE 958 (1294)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhHhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 345566778888888888888888887776655544444444432222220 00111224667777777776543332
Q ss_pred HH-----hhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-H
Q 003941 458 EF-----KMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLS-E 531 (784)
Q Consensus 458 el-----k~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls-~ 531 (784)
.. .....+.+..+.+.++++.+++.+.-.-++..+..=.||...|.-+|-+..- .++++++......+.+.- .
T Consensus 959 ~~~~~~~~~~~~~~l~~~~e~l~~~~~~~~~~~~~l~~~~~~er~l~dnl~~~~l~~q~-~e~~re~~~ld~Qi~~~~~~ 1037 (1294)
T KOG0962|consen 959 CFEQYGFDDLRIAQLSESEEHLEERDNEVNEIKQKIRNQYQRERNLKDNLTLRNLERKL-KELERELSELDKQILEADIK 1037 (1294)
T ss_pred HHHHHhhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHH
Confidence 21 1222556677777788888887777666666666667777777766654432 355666665555533311 1
Q ss_pred HHHHhhhH----HHHhhhhHHHHHHhhhHHHHHHHhhhhh----------------hhh------hHHhHHHHHHHHHHH
Q 003941 532 YLKNADQR----AEVSRSEKEEILVKLSHSEKMLAEGKGR----------------ANK------LEEDNAKLRLAVEQS 585 (784)
Q Consensus 532 ~Lk~a~q~----ie~~~kEKeei~~KLs~~E~~l~e~K~~----------------~~K------L~eDn~kLR~ALeqs 585 (784)
+-++.-+. .+....|+..+++-..+.+....-.+.. +++ ...|..+.+.||+.|
T Consensus 1038 ~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~kd~~~nyr~~~ie~~tt~~~~~DL~ky~~aLD~A 1117 (1294)
T KOG0962|consen 1038 SVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREKDFKDAEKNYRKALIELKTTELSNKDLDKYYKALDKA 1117 (1294)
T ss_pred HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111111 1222233333333333333332222221 122 348999999999999
Q ss_pred HHHHhhccCCcc
Q 003941 586 MTRLNRMSVDSD 597 (784)
Q Consensus 586 l~RL~~ms~dsD 597 (784)
+.+++.|-|...
T Consensus 1118 im~fHs~KMeei 1129 (1294)
T KOG0962|consen 1118 IMQFHSMKMEEI 1129 (1294)
T ss_pred HHHHHHHHHHHH
Confidence 999999987763
No 88
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.24 E-value=8.7 Score=45.32 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCc
Q 003941 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEK 350 (784)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k 350 (784)
.-+..+-..+.+|.+|+...-..+.+|+..|..+++-....
T Consensus 29 qr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~ 69 (617)
T PF15070_consen 29 QRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEP 69 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34567788888999999999999999999999988765444
No 89
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.96 E-value=5.9 Score=49.77 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=36.8
Q ss_pred HHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHh
Q 003941 465 SEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAK 512 (784)
Q Consensus 465 ~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ 512 (784)
++-.+.+...++++......-++|+..++-..+-|.|+.+--+.+.-+
T Consensus 1549 s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a 1596 (1758)
T KOG0994|consen 1549 SEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLA 1596 (1758)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 345566777888888888888888888888888888888776666544
No 90
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.94 E-value=0.0069 Score=70.06 Aligned_cols=125 Identities=26% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 003941 382 LQKLEKDLKETCSERDK---ALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEE 458 (784)
Q Consensus 382 l~~L~~eL~e~~~E~dK---a~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qee 458 (784)
...|+.+|-+.++..+| +..++.+.|+.|=+.. .+.. -+.+|++.|.-.-.++..||..|+...+-.
T Consensus 293 a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~-----~lk~---qvk~Lee~N~~l~e~~~~LEeel~~~~~~~-- 362 (713)
T PF05622_consen 293 ARALRDELDELREKADRADKLENEVEKYKKKLEDLE-----DLKR---QVKELEEDNAVLLETKAMLEEELKKARALK-- 362 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--
Confidence 46666666666665544 6668899998865543 2222 355677766555666778888887764432
Q ss_pred HhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 003941 459 FKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREE 525 (784)
Q Consensus 459 lk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree 525 (784)
..+...+.+|.+|.+++......++.-.-++..|+.-+.....+ +++|..+...+++.
T Consensus 363 ------~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~e---ke~l~~e~~~L~e~ 420 (713)
T PF05622_consen 363 ------SQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEE---KERLQEERDSLRET 420 (713)
T ss_dssp -------------------------------------------------------------------
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 23344566667777766665444433333444454444433322 24455555544443
No 91
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.73 E-value=14 Score=45.15 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=24.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHH
Q 003941 219 LAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQ 255 (784)
Q Consensus 219 ~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~ 255 (784)
+.|.+.+|-.+-..-.+.-+++++++.+++-++-++.
T Consensus 630 ~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI 666 (970)
T KOG0946|consen 630 LIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLI 666 (970)
T ss_pred HHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666655555555667788888888887754443
No 92
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=94.58 E-value=19 Score=45.87 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhh
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (784)
+..|.+.|..|+.+...+..++..|.+.+..+.
T Consensus 744 i~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~ 776 (1353)
T TIGR02680 744 IAELDARLAAVDDELAELARELRALGARQRALA 776 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777777777766666663
No 93
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.53 E-value=13 Score=45.34 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=59.0
Q ss_pred hhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003941 461 MMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRA 540 (784)
Q Consensus 461 ~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~i 540 (784)
+....-...-.+++..|+++ +.-++..+.++|.-+-+|..++++.-+ .+.+.+..|......-
T Consensus 781 ~~~~~~~~~~qeqv~El~~~-------l~e~~~~l~~~q~e~~~~keq~~t~~~----------~tsa~a~~le~m~~~~ 843 (970)
T KOG0946|consen 781 QGSLNDNLGDQEQVIELLKN-------LSEESTRLQELQSELTQLKEQIQTLLE----------RTSAAADSLESMGSTE 843 (970)
T ss_pred cchhhhhhhhHHHHHHHHHh-------hhhhhhHHHHHHHHHHHHHHHHHHHHH----------HHHhhhhhhHHhhccc
Confidence 33333444445555555544 344556788999999999888866422 2222222222222221
Q ss_pred HHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHH
Q 003941 541 EVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLR 579 (784)
Q Consensus 541 e~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR 579 (784)
.....|+..|-+||+.....++.+++.+.++.+...-|.
T Consensus 844 ~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~ 882 (970)
T KOG0946|consen 844 KNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLE 882 (970)
T ss_pred cchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHH
Confidence 223466666777888888777777777777766654444
No 94
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.47 E-value=15 Score=44.28 Aligned_cols=91 Identities=19% Similarity=0.194 Sum_probs=58.4
Q ss_pred hhhHhhHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhh
Q 003941 492 NVELLNLQTALGQYFAEI-EAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANK 570 (784)
Q Consensus 492 nvEl~NLQtALgqfqAE~-EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~K 570 (784)
..||..|-..+..++.-. +++.+++.++..+.+.+..+.+..+....++....+|.-....-....+..++-++..+..
T Consensus 372 k~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvt 451 (717)
T PF09730_consen 372 KAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGESQGSLNSAQDELVT 451 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445555555555555433 4556777888888888887777666665566555555433333344566667777778888
Q ss_pred hHHhHHHHHHHH
Q 003941 571 LEEDNAKLRLAV 582 (784)
Q Consensus 571 L~eDn~kLR~AL 582 (784)
+-++.+.|=.|+
T Consensus 452 fSEeLAqLYHHV 463 (717)
T PF09730_consen 452 FSEELAQLYHHV 463 (717)
T ss_pred HHHHHHHHHHHH
Confidence 888888777766
No 95
>PRK09039 hypothetical protein; Validated
Probab=94.41 E-value=7 Score=42.63 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003941 513 GHLERELALAREESAKLSEYLKNADQRA 540 (784)
Q Consensus 513 ErLe~ELa~aree~a~Ls~~Lk~a~q~i 540 (784)
.+|.++++++|..++.|...|.+++.+.
T Consensus 140 ~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 140 ELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777778777777777777766664
No 96
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.39 E-value=14 Score=43.55 Aligned_cols=205 Identities=23% Similarity=0.320 Sum_probs=107.9
Q ss_pred HHHhhhHHHHHHHHHHhccccc--CCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcc
Q 003941 284 KELNGKLSELRRLQMELNRRED--GDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSR 361 (784)
Q Consensus 284 ~el~ek~sei~rlq~~l~~~e~--e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r 361 (784)
.+..+...|+..||.+|..-.. +...+-++.|+..+..+..+....+.+..+|+..+.-...+ -.+-||+..-.
T Consensus 321 ~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~--~~lL~d~e~ni-- 396 (594)
T PF05667_consen 321 DEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKT--VELLPDAEENI-- 396 (594)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhcCcHHHH--
Confidence 3344455556666555443222 12224556666666666666667777777777777655554 23344422211
Q ss_pred cCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHH
Q 003941 362 LDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERD----KALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEY 437 (784)
Q Consensus 362 ~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~d----Ka~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~ 437 (784)
+.|+.-++.-.+-|.++..+-+ .+..|+.+||...-..+.+-..++++ |.++|+..+.
T Consensus 397 --------------~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~----ik~~r~~~k~ 458 (594)
T PF05667_consen 397 --------------AKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQE----IKELREEIKE 458 (594)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHH----HHHHHHHHHH
Confidence 2233333333333444444433 34456666666555555444555544 5666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----hhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHH
Q 003941 438 QRAQILHLENVLKQTLAKQEEF-----KMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIE 510 (784)
Q Consensus 438 ~R~~Is~lEraLK~~~a~qeel-----k~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~E 510 (784)
+...+-.+|...++-....+.+ ++++-..|...-.-|.+-+.++.-.+.....-.-||++|+--|.-=|+-.+
T Consensus 459 ~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~d 536 (594)
T PF05667_consen 459 IEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTD 536 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 6666666666555443333322 222223333333444445555555566667767788888888877666653
No 97
>PLN02939 transferase, transferring glycosyl groups
Probab=94.35 E-value=19 Score=44.88 Aligned_cols=200 Identities=22% Similarity=0.213 Sum_probs=115.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHH
Q 003941 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDL 389 (784)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL 389 (784)
--++.|-.||.+.+|-.-.|...+-.-...|+...+ -||.++..++.|+.-|
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~ 179 (977)
T PLN02939 128 FQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILT----------------------------EKEALQGKINILEMRL 179 (977)
T ss_pred ccHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHH----------------------------HHHHHHhhHHHHHHHh
Confidence 367778888888887666665555444444444322 3677777778887777
Q ss_pred HHhHHHH----------HHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003941 390 KETCSER----------DKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEF 459 (784)
Q Consensus 390 ~e~~~E~----------dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeel 459 (784)
.++.+-. +=...+|..||+.|+.....+..-.--=+....-|+++|--++..|.-|..+|- +.+.-++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 258 (977)
T PLN02939 180 SETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEENMLLKDDIQFLKAELI-EVAETEER 258 (977)
T ss_pred hhhhhhhhhhhhccccchhhHHHHHHHhhhhhccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHhhhHH
Confidence 7752211 112345677777766554321100001123345566677666666655443332 12222222
Q ss_pred hhhchHHHHhhHHHHHhhhhhHHHhHH---HHHh-----hhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 003941 460 KMMNHSEIQKSKEIIDGLNNKLANCMR---TIEA-----KNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSE 531 (784)
Q Consensus 460 k~~n~~E~~~ske~iedL~~~L~~~me---aleA-----KnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~ 531 (784)
--+-+-|...+..-+.+|..+++..-+ .+.. -=..+.|||.-|+.-..-.|.+.-.-..-.-++.++.+|.+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (977)
T PLN02939 259 VFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEA 338 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 222244666666777777777765322 1111 12245899999999877777665555555566778888998
Q ss_pred HHHHhhh
Q 003941 532 YLKNADQ 538 (784)
Q Consensus 532 ~Lk~a~q 538 (784)
+|++|.-
T Consensus 339 ~~~~~~~ 345 (977)
T PLN02939 339 SLKEANV 345 (977)
T ss_pred HHHHhhH
Confidence 8888764
No 98
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.26 E-value=13 Score=43.59 Aligned_cols=139 Identities=17% Similarity=0.213 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHH-HHHHHHHHHHHHHhH
Q 003941 315 LKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEM-EQSLQKLEKDLKETC 393 (784)
Q Consensus 315 Lk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEem-e~sl~~L~~eL~e~~ 393 (784)
.++-++-|.++...++.+..+.+.+|..-|...+-. + . +.+.+ +++|..|...|..++
T Consensus 192 ~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~---~-----------~-------~~~~~~~~~L~~l~~ql~~a~ 250 (754)
T TIGR01005 192 NTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLL---M-----------G-------NNATLATQQLAELNTELSRAR 250 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---c-----------c-------CCccchHHHHHHHHHHHHHHH
Confidence 344445555566666666777777888777663322 0 0 11122 255788888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh--hhh---hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 003941 394 SERDKALQELTRLKQHLIEKAQEES--EKM---DEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQ 468 (784)
Q Consensus 394 ~E~dKa~kEL~RLRqHLLe~E~Ee~--ekm---ded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~ 468 (784)
.++..+...+..|+..+-....... +.. .....+|.+|+.+. ..+++.+......- .-+.-.+.
T Consensus 251 ~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~L~~~l-------~~l~~~~~~l~~~y----~~~hP~v~ 319 (754)
T TIGR01005 251 ANRAAAEGTADSVKKALQNGGSLDVLPEVLSSQLKLEDLIQRLRERQ-------AELRATIADLSTTM----LANHPRVV 319 (754)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccchhhhhcCcccccHHHHHHHHHH-------HHHHHHHHHHHHhh----CCCCHHHH
Confidence 8888888888888877532111000 000 01124566665543 33343333221110 01234677
Q ss_pred hhHHHHHhhhhhHHHhH
Q 003941 469 KSKEIIDGLNNKLANCM 485 (784)
Q Consensus 469 ~ske~iedL~~~L~~~m 485 (784)
.++.+|++|++++....
T Consensus 320 ~l~~qi~~l~~~i~~e~ 336 (754)
T TIGR01005 320 AAKSSLADLDAQIRSEL 336 (754)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888888877765443
No 99
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.15 E-value=17 Score=43.74 Aligned_cols=312 Identities=22% Similarity=0.236 Sum_probs=154.3
Q ss_pred hhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHH
Q 003941 245 ADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEK 324 (784)
Q Consensus 245 ~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~k 324 (784)
.+++--|.-|+.+-+-...+|+.|.|+-.+-|.++.+|-+--+-|--+|.-|...|..... --+-..++....+.|+.
T Consensus 359 ~~L~~lL~~Eqqr~~~~ed~lk~l~~eLqkks~eleEmtk~k~~ke~eleeL~~~L~e~qk--ll~ekk~~eki~E~lq~ 436 (786)
T PF05483_consen 359 CNLKELLTTEQQRLKKNEDQLKILTMELQKKSSELEEMTKQKNNKEVELEELKKILAEKQK--LLDEKKQFEKIAEELQG 436 (786)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3445567778888888899999999999999999999988888888888888888876542 11112222222222221
Q ss_pred h-------hhhhHhhHHHHHHHHHHhhhcCCCc-cCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHH
Q 003941 325 E-------NNSLKMEKTELVAALEKNRKSSNEK-IFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSER 396 (784)
Q Consensus 325 E-------n~tlk~~~~eL~a~L~~~r~t~~~k-~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~ 396 (784)
- ..+...+...|+..|+..-.. .+ ...-..++- .+++. .. -.+.++-.....|.-+-+..+.+.
T Consensus 437 ~eqel~~llq~~ekev~dLe~~l~~~~~~--eq~yskQVeeLK----tELE~-Ek-LKN~ELt~~~nkLslEkk~laQE~ 508 (786)
T PF05483_consen 437 TEQELTGLLQIREKEVHDLEIQLTTIKES--EQHYSKQVEELK----TELEQ-EK-LKNTELTVNCNKLSLEKKQLAQET 508 (786)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHh--hHHHHHHHHHHH----HHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 122223333344444333111 00 000000000 00000 00 023445455566666666777777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhchHHHHh
Q 003941 397 DKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQ-------EEFKMMNHSEIQK 469 (784)
Q Consensus 397 dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~q-------eelk~~n~~E~~~ 469 (784)
....-||..+.-.+-... .-.++| -+.|+.|.+++-..|..+..+-..|++....- ++..-..+.|+.+
T Consensus 509 ~~~~~elKk~qedi~~~k-~qee~~---~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~ 584 (786)
T PF05483_consen 509 SDMALELKKQQEDINNSK-KQEEKM---LKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEILK 584 (786)
T ss_pred HHhhhhHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhh
Confidence 777777776633322221 112333 33466776666666666655555555432211 1111111122222
Q ss_pred hHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHH
Q 003941 470 SKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEE 549 (784)
Q Consensus 470 ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKee 549 (784)
...+|--|.+++.+ ++ .++.|-...++.+|-+- -++...+++-+..+..+.-.|.....|-+-
T Consensus 585 k~kq~k~lenk~~~----Lr---KqvEnk~K~ieeLqqeN----------k~LKKk~~aE~kq~~~~eikVn~L~~E~e~ 647 (786)
T PF05483_consen 585 KEKQMKILENKCNN----LR---KQVENKNKNIEELQQEN----------KALKKKITAESKQSNVYEIKVNKLQEELEN 647 (786)
T ss_pred hHHHHHHHHHHHHH----HH---HHHHHHHhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222211111 11 12334444444444444 346666666665566665555544433322
Q ss_pred HHHhh----hHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHH
Q 003941 550 ILVKL----SHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMT 587 (784)
Q Consensus 550 i~~KL----s~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~ 587 (784)
+-.+. .-..+.+.+.+-....|..++.++|..-++|+.
T Consensus 648 ~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAvK 689 (786)
T PF05483_consen 648 LKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAVK 689 (786)
T ss_pred HHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 22211 113333444444566788888888888888876
No 100
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=94.04 E-value=14 Score=42.21 Aligned_cols=101 Identities=24% Similarity=0.286 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHh-hhhhhhHHHhHHHHHhh-----chHHHHHHhhcc--c--Ccc----------chhhHHHHHHHH
Q 003941 226 YESQTRQLRMELEQQ-RNKFADVQLKLQEEQRL-----NESFQDELKSLK--M--DKD----------KTSIEITEMRKE 285 (784)
Q Consensus 226 ~~~~i~~l~~el~~~-~~k~~~~~~~lqee~k~-----n~~fqe~l~~lk--~--~~~----------kts~~~~~~~~e 285 (784)
...+++.++.+|+.- +++...++. +.+-+. .+++++.|..|+ + ..+ +-..+++..+.+
T Consensus 121 ~~~El~~l~~~l~~l~~~~~~~~~~--~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~e~~~~~ 198 (511)
T PF09787_consen 121 LDQELRRLRRQLEELQNEKSRILSD--ESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKKEIERQE 198 (511)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCch--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666655 333322211 111111 167777666665 2 221 123344556777
Q ss_pred HhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhH
Q 003941 286 LNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLK 330 (784)
Q Consensus 286 l~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk 330 (784)
|.+...-++++...+.. ..+....++.++....+.+.|-..||
T Consensus 199 L~~~~~A~~~~~~~l~~--~~e~~~~l~l~~~~~~~~~~el~~Yk 241 (511)
T PF09787_consen 199 LEERPKALRHYIEYLRE--SGELQEQLELLKAEGESEEAELQQYK 241 (511)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 77777777777777653 33344577788888888888888888
No 101
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.02 E-value=21 Score=44.29 Aligned_cols=65 Identities=22% Similarity=0.156 Sum_probs=34.2
Q ss_pred HHHHhhhhHHHHHHhhhHHH---HHHHhhh-hhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHH
Q 003941 539 RAEVSRSEKEEILVKLSHSE---KMLAEGK-GRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVI 606 (784)
Q Consensus 539 ~ie~~~kEKeei~~KLs~~E---~~l~e~K-~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVt 606 (784)
..|..++..++-++.|...+ -.|.|-. ....-|++++.+++=|..+...|.+.-. ...+||..-+
T Consensus 459 nlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~g~~kel~~r~~aaq---et~yDrdqTI 527 (1243)
T KOG0971|consen 459 NLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAKGARKELQKRVEAAQ---ETVYDRDQTI 527 (1243)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHhHHHHH
Confidence 34445555555555443333 3333333 2344467777777777766666665532 3456655433
No 102
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=93.92 E-value=9.1 Score=39.70 Aligned_cols=150 Identities=21% Similarity=0.269 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHH----HH
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQK----LE 386 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~----L~ 386 (784)
.+..++..+...+.++..|...+.+|......|+.. -++.|..+.. ..
T Consensus 10 ~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i----------------------------~~e~Ek~i~~~i~e~~ 61 (207)
T PF05010_consen 10 AIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKI----------------------------MEEYEKTIAQMIEEKQ 61 (207)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHH----------------------------HHHHHHHHHHHHHHHH
Confidence 556666666666666777777777777777777544 1233333322 22
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhhh---hhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 003941 387 KDLKETCSERDKALQELTRLKQHLIEKAQEE---SEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMN 463 (784)
Q Consensus 387 ~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee---~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n 463 (784)
+.-.....+..+..+|.+.+..||-.++.-= --+.+.--.+|+.++..-+.++.||.++...+++.-.+.+-||.-.
T Consensus 62 ~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hA 141 (207)
T PF05010_consen 62 KQKELSEAEIQKLLKERDQAYADLNSLEKSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHA 141 (207)
T ss_pred hhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333445567777777777777776665411 1344444456777777667777777777777776544444454444
Q ss_pred hHHHHhhHHHHHhhhhhHHHhHHHH
Q 003941 464 HSEIQKSKEIIDGLNNKLANCMRTI 488 (784)
Q Consensus 464 ~~E~~~ske~iedL~~~L~~~meal 488 (784)
...+...|++|..+..+..+.+.++
T Consensus 142 eekL~~ANeei~~v~~~~~~e~~aL 166 (207)
T PF05010_consen 142 EEKLEKANEEIAQVRSKHQAELLAL 166 (207)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 5555556666665555544444333
No 103
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.88 E-value=9.8 Score=41.88 Aligned_cols=158 Identities=27% Similarity=0.306 Sum_probs=84.0
Q ss_pred HhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCC
Q 003941 286 LNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGK 365 (784)
Q Consensus 286 l~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~ 365 (784)
|..|..-|.-|--+|..-.. -.+++|.|.++|+...+.|+..+.++.-... ..| |
T Consensus 4 L~SK~eAL~IL~~eLe~cq~-----ErDqyKlMAEqLqer~q~LKkk~~el~~~~~----~~~-----d----------- 58 (319)
T PF09789_consen 4 LQSKSEALLILSQELEKCQS-----ERDQYKLMAEQLQERYQALKKKYRELIQEAA----GFG-----D----------- 58 (319)
T ss_pred hhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc----ccC-----C-----------
Confidence 44455555555444433222 2456666666666666666666666542110 001 1
Q ss_pred CccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhh--------------hh-----hhhhhhhH
Q 003941 366 MVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQE--------------ES-----EKMDEDSK 426 (784)
Q Consensus 366 ~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~E--------------e~-----ekmded~k 426 (784)
+..+|.++. .+|..-|.+++.+.-++.-|+.-|||.|-+...+ .. ...++.+.
T Consensus 59 ---~~~~~~~~~-----~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~ 130 (319)
T PF09789_consen 59 ---PSIPPEKEN-----KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHERED 130 (319)
T ss_pred ---ccCCcccch-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHH
Confidence 011122222 3344445555555666666666666665443321 10 11133333
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHh
Q 003941 427 IIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANC 484 (784)
Q Consensus 427 ~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~ 484 (784)
.|. .+|..+.++.+||+.++--.-..+|+ ..|....+..+.+|++.|.-.
T Consensus 131 lV~----qLEk~~~q~~qLe~d~qs~lDEkeEl----~~ERD~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 131 LVE----QLEKLREQIEQLERDLQSLLDEKEEL----VTERDAYKCKAHRLNHELNYI 180 (319)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 333 46788889999999888765544443 356777788888888877553
No 104
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=93.80 E-value=16 Score=42.13 Aligned_cols=30 Identities=20% Similarity=0.482 Sum_probs=17.4
Q ss_pred cCccchhhHHHHHHHHHhhhHHHHHHHHHH
Q 003941 270 MDKDKTSIEITEMRKELNGKLSELRRLQME 299 (784)
Q Consensus 270 ~~~~kts~~~~~~~~el~ek~sei~rlq~~ 299 (784)
++...+..++..|++.+..-+.-|..|..+
T Consensus 249 ~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~ 278 (569)
T PRK04778 249 LDHLDIEKEIQDLKEQIDENLALLEELDLD 278 (569)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhcChH
Confidence 455556666666666666655555555443
No 105
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=93.78 E-value=23 Score=43.77 Aligned_cols=32 Identities=28% Similarity=0.246 Sum_probs=19.2
Q ss_pred cchHHHHHHHHHHHHHHhhhhhHhhHHHHHHH
Q 003941 308 ANDVVENLKRVVATLEKENNSLKMEKTELVAA 339 (784)
Q Consensus 308 ~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~ 339 (784)
+...++...++.-+.++.-+.+|..|.+|...
T Consensus 408 a~~~~ee~e~~~l~~e~ry~klkek~t~l~~~ 439 (980)
T KOG0980|consen 408 AQVLVEEAENKALAAENRYEKLKEKYTELRQE 439 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446666666666666666666666666544
No 106
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.72 E-value=14 Score=41.07 Aligned_cols=32 Identities=16% Similarity=0.252 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003941 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQ 408 (784)
Q Consensus 377 eme~sl~~L~~eL~e~~~E~dKa~kEL~RLRq 408 (784)
+.....+-|..++.+.+.+.+.+..+|...|+
T Consensus 158 ~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 158 DSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566677777777778888888888764
No 107
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=93.65 E-value=9.1 Score=42.42 Aligned_cols=176 Identities=16% Similarity=0.187 Sum_probs=86.5
Q ss_pred hchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHH--------HHHHhhcccCccchhhHHHHHHHHH
Q 003941 215 KNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESF--------QDELKSLKMDKDKTSIEITEMRKEL 286 (784)
Q Consensus 215 ~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~f--------qe~l~~lk~~~~kts~~~~~~~~el 286 (784)
++........-++.++.+++.+|++-..++.+++. .|..+ .++|.. .......++.++
T Consensus 155 ~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~-------~~~~~~~~~~~~~~~~l~~-------l~~~l~~~~~~l 220 (498)
T TIGR03007 155 KRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQ-------ENGGILPDQEGDYYSEISE-------AQEELEAARLEL 220 (498)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hCcccCccchhhHHHHHHH-------HHHHHHHHHHHH
Confidence 34444455666667777777777666666655432 22221 111111 122344455555
Q ss_pred hhhHHHHHHHHHHhcccccCCc---chHHHHHHHHHHHHHHhhhhhHhhHH-------HHHHHHHHhhhcCCCccCCCCC
Q 003941 287 NGKLSELRRLQMELNRREDGDA---NDVVENLKRVVATLEKENNSLKMEKT-------ELVAALEKNRKSSNEKIFPDAS 356 (784)
Q Consensus 287 ~ek~sei~rlq~~l~~~e~e~~---~~~~~sLk~~~~~L~kEn~tlk~~~~-------eL~a~L~~~r~t~~~k~~~da~ 356 (784)
.+..+.+..|+..+.+...... +..+..++..+..++.+...+...|. .|...|..++......+....+
T Consensus 221 ~~~~a~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l~~~~~~~~~ 300 (498)
T TIGR03007 221 NEAIAQRDALKRQLGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEEEGSAKNG 300 (498)
T ss_pred HHHHHHHHHHHHHhccCCCCcCcccccCCCchHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhhcccccc
Confidence 5556666666666665332221 12455666667777766666655443 4444444444432222211111
Q ss_pred CCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003941 357 EYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLI 411 (784)
Q Consensus 357 e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLL 411 (784)
.... ....-|...+|...+..++.++.......+-..+++.++++.+.
T Consensus 301 ~~~~-------~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~ 348 (498)
T TIGR03007 301 GPER-------GEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLR 348 (498)
T ss_pred Cccc-------ccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 01111344566666666666666666666666666666655543
No 108
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.44 E-value=21 Score=42.33 Aligned_cols=70 Identities=40% Similarity=0.700 Sum_probs=56.3
Q ss_pred ChhHHHHHHHHHHH-----hhhHHhHhHhhhhHH-HHhhhhHH---HhhhhhccccchhhhhhhhHHHHHhhhcCCCccC
Q 003941 70 DPEIERYKAEIKRL-----QESEAEIKALSVNYA-ALLKEKEE---QISRLNGEYGLLKQNLDATNAALNAFRNGNSKAS 140 (784)
Q Consensus 70 ~~eie~ykaei~~l-----q~seaeikals~nya-allkeked---qi~rl~~engslk~nl~~t~~al~~~r~~~~~~s 140 (784)
..+++.|+.+|.|| |.+++-|+| -||. ++|.||++ |...|.-++.++++-||-|+.||-.+|+-|.++-
T Consensus 7 eq~ve~lr~eierLT~el~q~t~e~~qa--AeyGL~lLeeK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~ 84 (772)
T KOG0999|consen 7 EQEVEKLRQEIERLTEELEQTTEEKIQA--AEYGLELLEEKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVA 84 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46789999999998 566666665 5675 68899876 6777888999999999999999998887655543
Q ss_pred C
Q 003941 141 S 141 (784)
Q Consensus 141 ~ 141 (784)
.
T Consensus 85 ~ 85 (772)
T KOG0999|consen 85 R 85 (772)
T ss_pred c
Confidence 3
No 109
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.32 E-value=14 Score=39.83 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHh
Q 003941 524 EESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAE 563 (784)
Q Consensus 524 ee~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e 563 (784)
.++..|...|...+..++....+|.++...+..++++..+
T Consensus 230 ~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~ 269 (325)
T PF08317_consen 230 KELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREE 269 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444443
No 110
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=93.30 E-value=19 Score=41.56 Aligned_cols=157 Identities=18% Similarity=0.257 Sum_probs=82.3
Q ss_pred HHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHH-------HHh----hhhHHHHHHHHHHHHHHHHHHHH
Q 003941 467 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEI-------EAK----GHLERELALAREESAKLSEYLKN 535 (784)
Q Consensus 467 ~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~-------EA~----ErLe~ELa~aree~a~Ls~~Lk~ 535 (784)
...+..++..+..++......+....+--.-++.-|....... ..- ..|..+-..||+.+..+...|-.
T Consensus 346 ~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ 425 (560)
T PF06160_consen 346 VRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLRE 425 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666665555555555443333333333333222 211 23333334444444444444444
Q ss_pred hhhHHHHhhh--hHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHH
Q 003941 536 ADQRAEVSRS--EKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYF 613 (784)
Q Consensus 536 a~q~ie~~~k--EKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf 613 (784)
.++.++...- ==+.++..+..+...+..+...+.+..-+...+.+.|+.+-..+.......+.+||--.++--++-|=
T Consensus 426 ikR~lek~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t~~li~~A~L~E~~iQYa 505 (560)
T PF06160_consen 426 IKRRLEKSNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKTEELIDNATLAEQLIQYA 505 (560)
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433200 00012223333444455555555666666777777777777777666667788888888888888888
Q ss_pred hcC--CchHHHH
Q 003941 614 QRN--HSKEVLD 623 (784)
Q Consensus 614 ~R~--~sKEVL~ 623 (784)
+|- ...+|=.
T Consensus 506 NRYR~~~~~v~~ 517 (560)
T PF06160_consen 506 NRYRSDNPEVDE 517 (560)
T ss_pred hcccCCCHHHHH
Confidence 854 3335543
No 111
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.01 E-value=11 Score=39.97 Aligned_cols=25 Identities=36% Similarity=0.299 Sum_probs=16.4
Q ss_pred HHHhhhchHHHHhhHHHHHhhhhhH
Q 003941 457 EEFKMMNHSEIQKSKEIIDGLNNKL 481 (784)
Q Consensus 457 eelk~~n~~E~~~ske~iedL~~~L 481 (784)
+........+++++++.+.+...++
T Consensus 58 e~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 58 ENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445677888888777776666
No 112
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.79 E-value=16 Score=44.40 Aligned_cols=167 Identities=23% Similarity=0.261 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH----HH-Hhhhch-----
Q 003941 395 ERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQ----EE-FKMMNH----- 464 (784)
Q Consensus 395 E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~q----ee-lk~~n~----- 464 (784)
=-+|+..|..-||++|=+- .+.+-....+|+||+-|||.-|-.. ++ -..+.+
T Consensus 18 gwekae~e~~~lk~~l~~~------------------~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~ 79 (769)
T PF05911_consen 18 GWEKAEAEAASLKQQLEAA------------------TQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKK 79 (769)
T ss_pred hHHHHHHHHHHHHHHHHHH------------------HHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3578999999999985222 2223344566788888888755421 11 111111
Q ss_pred -HHHH----hhHHHHHhhhhhHHHh-------HHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 003941 465 -SEIQ----KSKEIIDGLNNKLANC-------MRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEY 532 (784)
Q Consensus 465 -~E~~----~ske~iedL~~~L~~~-------mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~ 532 (784)
.|.. .+...+.+++++|+.. ..+|..|..-|.-|.....+--+++ ..|...|..+..+++.|--.
T Consensus 80 s~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~---~~l~~~l~~~eken~~Lkye 156 (769)
T PF05911_consen 80 SKEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEI---EDLMARLESTEKENSSLKYE 156 (769)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHH
Confidence 1222 2334444444444321 1122222222333333332222222 23455566666666665555
Q ss_pred HHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHH
Q 003941 533 LKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAV 582 (784)
Q Consensus 533 Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~AL 582 (784)
|-.-.-.++.+..|++.-......+-++..+.=..+.||+.++-+||--+
T Consensus 157 ~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~ 206 (769)
T PF05911_consen 157 LHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALV 206 (769)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555666666665444333344444444456777888888877543
No 113
>PRK11281 hypothetical protein; Provisional
Probab=92.75 E-value=28 Score=43.87 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003941 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 377 eme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqH 409 (784)
...+.++.|++.+..+-.+...+.++|.+|++.
T Consensus 77 ~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~ 109 (1113)
T PRK11281 77 RQKEETEQLKQQLAQAPAKLRQAQAELEALKDD 109 (1113)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 344446788888888888899999999999874
No 114
>PF13514 AAA_27: AAA domain
Probab=92.67 E-value=33 Score=42.53 Aligned_cols=16 Identities=13% Similarity=0.179 Sum_probs=10.9
Q ss_pred cCCCHHHHHHhhhccc
Q 003941 629 LGFSDEDKQRIGMAQQ 644 (784)
Q Consensus 629 LgFSDEEK~riGL~~q 644 (784)
=++|.--+..+.|+-+
T Consensus 1024 ~~LS~GT~dQLYLALR 1039 (1111)
T PF13514_consen 1024 EELSRGTRDQLYLALR 1039 (1111)
T ss_pred HHhCHHHHHHHHHHHH
Confidence 3467777777777766
No 115
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=92.50 E-value=26 Score=40.91 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=8.4
Q ss_pred CCHHHHHHhhhccc
Q 003941 631 FSDEDKQRIGMAQQ 644 (784)
Q Consensus 631 FSDEEK~riGL~~q 644 (784)
+|.-||+-+.|+-.
T Consensus 552 lS~Ge~~~~~la~~ 565 (650)
T TIGR03185 552 LSAGERQILAIALL 565 (650)
T ss_pred CCHHHHHHHHHHHH
Confidence 46666666655554
No 116
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=92.38 E-value=20 Score=39.39 Aligned_cols=139 Identities=27% Similarity=0.356 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHH
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLK 390 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~ 390 (784)
..+.|++-+..|+.||..|..+...|-..-.+ .+ -+|. . |-.+
T Consensus 161 ~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~-----------------------~E------ekEq---q---Lv~d-- 203 (306)
T PF04849_consen 161 QLEALQEKLKSLEEENEQLRSEASQLKTETDT-----------------------YE------EKEQ---Q---LVLD-- 203 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhh-----------------------cc------HHHH---H---HHHH--
Confidence 36899999999999999998887776432211 11 1222 1 2111
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhch---HHH
Q 003941 391 ETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNH---SEI 467 (784)
Q Consensus 391 e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~---~E~ 467 (784)
-..+..-|...+..|-.-|--+- |+- . -.+++.-+...+|..+++.+|+-++..+++...-. .-.
T Consensus 204 -cv~QL~~An~qia~LseELa~k~-Ee~---~-------rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q 271 (306)
T PF04849_consen 204 -CVKQLSEANQQIASLSEELARKT-EEN---R-------RQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQ 271 (306)
T ss_pred -HHHHhhhcchhHHHHHHHHHHHH-HHH---H-------HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 12223333444444433322221 111 1 11223455577788888888887777666533211 112
Q ss_pred HhhHHHHHhhhhhHHHhHHHHHhhhhhHhhH
Q 003941 468 QKSKEIIDGLNNKLANCMRTIEAKNVELLNL 498 (784)
Q Consensus 468 ~~ske~iedL~~~L~~~mealeAKnvEl~NL 498 (784)
..+..++.+|+.+-+.|+..+-....|+-+|
T Consensus 272 ~~L~aEL~elqdkY~E~~~mL~EaQEElk~l 302 (306)
T PF04849_consen 272 RQLQAELQELQDKYAECMAMLHEAQEELKTL 302 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3355677788888888887766655666555
No 117
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=92.33 E-value=17 Score=38.46 Aligned_cols=29 Identities=14% Similarity=0.267 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHHHHh
Q 003941 315 LKRVVATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 315 Lk~~~~~L~kEn~tlk~~~~eL~a~L~~~ 343 (784)
+......+..+...|..++..+++.+...
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 156 (423)
T TIGR01843 128 IKGQQSLFESRKSTLRAQLELILAQIKQL 156 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555666666555555544
No 118
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.29 E-value=7 Score=41.97 Aligned_cols=154 Identities=19% Similarity=0.262 Sum_probs=80.2
Q ss_pred HhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccc
Q 003941 225 AYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRRE 304 (784)
Q Consensus 225 ~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e 304 (784)
-+++-+++|+.-+++-|.-+.++.-..-.++-. .|+|=... + ..++..++.+..-||..=--.+.
T Consensus 72 ly~~~c~EL~~~I~egr~~~~~~E~~~~~~nPp--Lf~EY~~a---~--------~d~r~~m~~q~~~vK~~aRl~aK-- 136 (325)
T PF08317_consen 72 LYQFSCRELKKYISEGRQIFEEIEEETYESNPP--LFREYYTA---D--------PDMRLLMDNQFQLVKTYARLEAK-- 136 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH--HHHHHHcC---C--------HHHHHHHHHHHHHHHHHHHHHHH--
Confidence 356778888888888888888887777665533 66664321 1 22334444444433322111111
Q ss_pred cCCcc-h-HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHH
Q 003941 305 DGDAN-D-VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSL 382 (784)
Q Consensus 305 ~e~~~-~-~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl 382 (784)
..- + -.+. +..=+..|...++.|..- .+-|...+
T Consensus 137 --~~WYeWR~~l--------------l~gl~~~L~~~~~~L~~D----------------------------~~~L~~~~ 172 (325)
T PF08317_consen 137 --KMWYEWRMQL--------------LEGLKEGLEENLELLQED----------------------------YAKLDKQL 172 (325)
T ss_pred --HHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH----------------------------HHHHHHHH
Confidence 000 1 1111 122233444444444211 23344445
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHH
Q 003941 383 QKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILH 444 (784)
Q Consensus 383 ~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~ 444 (784)
+.+..-+..+....+.+..|+.+||+..-+.+..+.+ .++.+|+++..+...|..
T Consensus 173 ~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~-------eL~~lr~eL~~~~~~i~~ 227 (325)
T PF08317_consen 173 EQLDELLPKLRERKAELEEELENLKQLVEEIESCDQE-------ELEALRQELAEQKEEIEA 227 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHH-------HHHHHHHHHHHHHHHHHH
Confidence 6666666667777888899999999986555433332 344455544444444443
No 119
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=92.26 E-value=8.6 Score=42.28 Aligned_cols=135 Identities=19% Similarity=0.221 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccC----C----CCccCCCCCchhHHHHH
Q 003941 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLD----G----KMVSSESFPGKEEMEQS 381 (784)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~----s----~~~~~~sf~~kEeme~s 381 (784)
..+...+..+..|..|...|+..+.|+..++.-+|.+..+.-..+ .....+++ + ++++. =-+.+.++..
T Consensus 72 ~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~-~~~~~~~~~~ere~lV~qLEk~--~~q~~qLe~d 148 (319)
T PF09789_consen 72 QLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGD-EGIGARHFPHEREDLVEQLEKL--REQIEQLERD 148 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhh-ccccccccchHHHHHHHHHHHH--HHHHHHHHHH
Confidence 456666777777777777888888888888777777655432111 12222221 1 11110 0134555666
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003941 382 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQ 451 (784)
Q Consensus 382 l~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~ 451 (784)
++.+-.|..|...|||--.-=.+||=+-|-..=..+.-+.- | ||-|-.||-|+..+|.+++.+..-
T Consensus 149 ~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~riv-D---IDaLi~ENRyL~erl~q~qeE~~l 214 (319)
T PF09789_consen 149 LQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIV-D---IDALIMENRYLKERLKQLQEEKEL 214 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcc-c---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677777766666666664443222211111111 2 677777899999999987765443
No 120
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.19 E-value=31 Score=41.04 Aligned_cols=152 Identities=22% Similarity=0.324 Sum_probs=88.2
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003941 374 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTL 453 (784)
Q Consensus 374 ~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~ 453 (784)
.|+++++.++.|+.++.-+++|.|+...=|..-+-. .+-.-. +-.+++..+|.|-...-+|.-.+|..||..||+..
T Consensus 44 eK~~Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~--hkk~~~-~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r 120 (772)
T KOG0999|consen 44 EKEDLKQQLEELEAEYDLARTELDQTKEALGQYRSQ--HKKVAR-DGEEREESLLQESAAKEEYYLQKILELENELKQLR 120 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhc-cchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 466777777766666666666666655555544421 111111 11233345566655555666677999999999865
Q ss_pred HHHHHHhh-----------------hchHHHHhhHHHHHhhhhh---HHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhh
Q 003941 454 AKQEEFKM-----------------MNHSEIQKSKEIIDGLNNK---LANCMRTIEAKNVELLNLQTALGQYFAEIEAKG 513 (784)
Q Consensus 454 a~qeelk~-----------------~n~~E~~~ske~iedL~~~---L~~~mealeAKnvEl~NLQtALgqfqAE~EA~E 513 (784)
....+.+. +-+.+..+++.+|.++|-+ |...-..++--|.-|.-.=+.|-+-|-|-|.
T Consensus 121 ~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEg-- 198 (772)
T KOG0999|consen 121 QELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEG-- 198 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhH--
Confidence 44322111 1123556677777776643 4444456666677777777788888888765
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 003941 514 HLERELALAREESAKLSE 531 (784)
Q Consensus 514 rLe~ELa~aree~a~Ls~ 531 (784)
|.-|+.++-+++.=|..
T Consensus 199 -lkheikRleEe~elln~ 215 (772)
T KOG0999|consen 199 -LKHEIKRLEEETELLNS 215 (772)
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 34555555555544433
No 121
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=91.98 E-value=36 Score=41.33 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 003941 382 LQKLEKDLKETCSERDKALQELTR 405 (784)
Q Consensus 382 l~~L~~eL~e~~~E~dKa~kEL~R 405 (784)
+..+...|.+...........+..
T Consensus 419 ~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 419 LEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444433333333333333
No 122
>smart00755 Grip golgin-97, RanBP2alpha,Imh1p and p230/golgin-245.
Probab=91.88 E-value=0.35 Score=39.40 Aligned_cols=40 Identities=18% Similarity=0.388 Sum_probs=33.7
Q ss_pred hhHHHHHHHHHHHHhcCCc--hHHHHHHHHhcCCCHHHHHHh
Q 003941 600 VDRRIVIKLLVTYFQRNHS--KEVLDLMVRMLGFSDEDKQRI 639 (784)
Q Consensus 600 VDRRIVtkLLLTYf~R~~s--KEVL~LMArMLgFSDEEK~ri 639 (784)
+|-.-+.|+++.||+...+ ..++-.|+++|.||++|.+++
T Consensus 2 ~n~eYLKNVll~fl~~~e~~r~~ll~vi~tlL~fs~~e~~~~ 43 (46)
T smart00755 2 ANFEYLKNVLLQFLTLRESERETLLKVISTVLQLSPEEMQKL 43 (46)
T ss_pred ccHHHHHHHHHHHhccCcchHHHHHHHHHHHhCCCHHHHHHH
Confidence 3445678999999995555 589999999999999999876
No 123
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=91.74 E-value=33 Score=40.52 Aligned_cols=39 Identities=33% Similarity=0.394 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003941 376 EEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 376 Eeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 414 (784)
++-++.++.|+..|.++..+.+.+..++++|+..+-.+.
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~ 362 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLE 362 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666788888888888888888888888887755443
No 124
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=91.71 E-value=8.3 Score=44.14 Aligned_cols=57 Identities=25% Similarity=0.303 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003941 396 RDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEF 459 (784)
Q Consensus 396 ~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeel 459 (784)
++++..|+.|||..|-.-+.+.++||-. ++++---+|.....+++.|+.++.+++-+
T Consensus 255 i~~l~~EveRlrt~l~~Aqk~~~ek~~q-------y~~Ee~~~reen~rlQrkL~~e~erReal 311 (552)
T KOG2129|consen 255 IDKLQAEVERLRTYLSRAQKSYQEKLMQ-------YRAEEVDHREENERLQRKLINELERREAL 311 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899999999998888888887765 44444456666678888888888877654
No 125
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=91.57 E-value=37 Score=40.77 Aligned_cols=171 Identities=22% Similarity=0.265 Sum_probs=110.6
Q ss_pred HHHHHHHhhhhhhhHHHhHHHHHhhch-------HHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHH-------H
Q 003941 233 LRMELEQQRNKFADVQLKLQEEQRLNE-------SFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQ-------M 298 (784)
Q Consensus 233 l~~el~~~~~k~~~~~~~lqee~k~n~-------~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq-------~ 298 (784)
|..++..-+.+++++=..|-+...+-. ++.++|..| .+.++.|+...++++.|++.++ .
T Consensus 66 L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l-------~~~le~lr~qk~eR~~ef~el~~qie~l~~ 138 (660)
T KOG4302|consen 66 LLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESL-------KPYLEGLRKQKDERRAEFKELYHQIEKLCE 138 (660)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544333322 666666654 5678888888888888777655 4
Q ss_pred Hhccc---------ccCCcc-hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCcc
Q 003941 299 ELNRR---------EDGDAN-DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVS 368 (784)
Q Consensus 299 ~l~~~---------e~e~~~-~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~ 368 (784)
+|.|. +..+.+ .-++.|+..|..|++|...=.....++...|...-..+|-.....++++-.... +.+.
T Consensus 139 ~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~~Lg~~~~~~vt~~~~sL~-~~~~ 217 (660)
T KOG4302|consen 139 ELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCSVLGLDFSMTVTDVEPSLV-DHDG 217 (660)
T ss_pred HhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccchhhhhhhhh-hccC
Confidence 56666 122233 368999999999999999999999999999999999999888866665554443 1111
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003941 369 SESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 369 ~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 414 (784)
-.+++-..+.-..|+.+.+.|++.+.++- +-|+-|+-.+++.=
T Consensus 218 ~~~~~is~etl~~L~~~v~~l~~~k~qr~---~kl~~l~~~~~~LW 260 (660)
T KOG4302|consen 218 EQSRSISDETLDRLDKMVKKLKEEKKQRL---QKLQDLRTKLLELW 260 (660)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 11244555555556666666666655554 44555666655543
No 126
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.56 E-value=39 Score=40.89 Aligned_cols=42 Identities=19% Similarity=0.135 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 003941 399 ALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENV 448 (784)
Q Consensus 399 a~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEra 448 (784)
..-|+.+|+.||-..+. |..+.-. |..+|+.....+..||++
T Consensus 280 LqeE~e~Lqskl~~~~~-----l~~~~~~---LELeN~~l~tkL~rwE~~ 321 (716)
T KOG4593|consen 280 LQEELEGLQSKLGRLEK-----LQSTLLG---LELENEDLLTKLQRWERA 321 (716)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHhh---HHHHHHHHHHHHHHHHHH
Confidence 34566666666555542 2222111 222566666667777764
No 127
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=91.44 E-value=35 Score=40.18 Aligned_cols=29 Identities=10% Similarity=0.206 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003941 381 SLQKLEKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 381 sl~~L~~eL~e~~~E~dKa~kEL~RLRqH 409 (784)
..+=|...|.+.+.+.+.++.+|...|+.
T Consensus 195 a~~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666777777777664
No 128
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=91.25 E-value=47 Score=41.26 Aligned_cols=75 Identities=15% Similarity=0.205 Sum_probs=50.7
Q ss_pred HhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccc
Q 003941 225 AYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRRE 304 (784)
Q Consensus 225 ~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e 304 (784)
.|.-++-.||.||+....-+.... +.....++++|+..--.-.+...+++.|+.+..+-+-..-|.+++-+
T Consensus 327 ~~~~~~~~lK~ql~~l~~ell~~~---------~~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~ 397 (913)
T KOG0244|consen 327 PKSFEMLKLKAQLEPLQVELLSKA---------GDELDAEINSLPFENVTLEETLDALLQEKGEERSTLSSKSLKLTGAE 397 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc---------cccchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhhhHHHHhcchhh
Confidence 344455555555554443332221 34466888888877777778888999999999999888888888866
Q ss_pred cCCc
Q 003941 305 DGDA 308 (784)
Q Consensus 305 ~e~~ 308 (784)
.+.+
T Consensus 398 ~~k~ 401 (913)
T KOG0244|consen 398 KEKD 401 (913)
T ss_pred hhHH
Confidence 5543
No 129
>PRK11281 hypothetical protein; Provisional
Probab=91.14 E-value=52 Score=41.64 Aligned_cols=78 Identities=14% Similarity=0.197 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhH
Q 003941 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETC 393 (784)
Q Consensus 314 sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~ 393 (784)
..+..++.|++.-.++..+.++..+.|+..++...... . . .. ...+ ..++|+.+..+..+|.+.+
T Consensus 77 ~~~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk~~~~~~~-------~-~---~~---~~~S-l~qLEq~L~q~~~~Lq~~Q 141 (1113)
T PRK11281 77 RQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEET-------R-E---TL---STLS-LRQLESRLAQTLDQLQNAQ 141 (1113)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhccccccc-------c-c---cc---cccC-HHHHHHHHHHHHHHHHHHH
Confidence 33444555666666666666667777776654211110 0 0 00 0011 2346666666666666665
Q ss_pred HHHHHHHHHHHHH
Q 003941 394 SERDKALQELTRL 406 (784)
Q Consensus 394 ~E~dKa~kEL~RL 406 (784)
......+..|..+
T Consensus 142 ~~La~~NsqLi~~ 154 (1113)
T PRK11281 142 NDLAEYNSQLVSL 154 (1113)
T ss_pred HHHHHHHHHHHhh
Confidence 5555554444443
No 130
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=91.13 E-value=42 Score=40.58 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=39.6
Q ss_pred HHHhhhchHHHH----hhHHHHHhhhhhHHHhHH----------------HHHhhhhhHhhHHHHHHHHH---HHHHHhh
Q 003941 457 EEFKMMNHSEIQ----KSKEIIDGLNNKLANCMR----------------TIEAKNVELLNLQTALGQYF---AEIEAKG 513 (784)
Q Consensus 457 eelk~~n~~E~~----~ske~iedL~~~L~~~me----------------aleAKnvEl~NLQtALgqfq---AE~EA~E 513 (784)
+.++.+-...+. +++.+++.+-|++..+.. .|+....++.=||.-.+.|- +|.+..
T Consensus 381 e~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~- 459 (698)
T KOG0978|consen 381 EMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETI- 459 (698)
T ss_pred HHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 444444444444 666777777666665433 22233333333444333333 333332
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003941 514 HLERELALAREESAKLSEYLKNADQRA 540 (784)
Q Consensus 514 rLe~ELa~aree~a~Ls~~Lk~a~q~i 540 (784)
.+.....++.+.+|.+.|..+++.-
T Consensus 460 --gsA~ed~Qeqn~kL~~el~ekdd~n 484 (698)
T KOG0978|consen 460 --GSAFEDMQEQNQKLLQELREKDDKN 484 (698)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3333334555666666666666654
No 131
>PRK12704 phosphodiesterase; Provisional
Probab=90.84 E-value=37 Score=39.36 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHhh
Q 003941 577 KLRLAVEQSMTRLNR 591 (784)
Q Consensus 577 kLR~ALeqsl~RL~~ 591 (784)
+.|.-|..||+|+-.
T Consensus 189 ~a~~i~~~a~qr~a~ 203 (520)
T PRK12704 189 KAKEILAQAIQRCAA 203 (520)
T ss_pred HHHHHHHHHHHhhcc
Confidence 567788999998854
No 132
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=90.73 E-value=38 Score=39.29 Aligned_cols=79 Identities=23% Similarity=0.339 Sum_probs=46.6
Q ss_pred hhHHHHHhhhhhHHHhHHHHHhhhhhHhhH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q 003941 469 KSKEIIDGLNNKLANCMRTIEAKNVELLNL----QTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSR 544 (784)
Q Consensus 469 ~ske~iedL~~~L~~~mealeAKnvEl~NL----QtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~ 544 (784)
..++.+..++.+|.+.-+.++. .|| +.-+..|+.-.+--+++..+|...+=.+..++..|..+...++...
T Consensus 411 ~Ar~~l~~~~~~l~~ikR~lek-----~nLPGlp~~y~~~~~~~~~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~ 485 (560)
T PF06160_consen 411 EAREKLQKLKQKLREIKRRLEK-----SNLPGLPEDYLDYFFDVSDEIEELSDELNQVPINMDEVNKQLEEAEDDVETLE 485 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----cCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666665555555 666 6666666665555556666666555556666666666666666555
Q ss_pred hhHHHHHH
Q 003941 545 SEKEEILV 552 (784)
Q Consensus 545 kEKeei~~ 552 (784)
.+-+.++.
T Consensus 486 ~~t~~li~ 493 (560)
T PF06160_consen 486 EKTEELID 493 (560)
T ss_pred HHHHHHHH
Confidence 44444443
No 133
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=90.44 E-value=23 Score=41.89 Aligned_cols=49 Identities=18% Similarity=0.073 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHhhhHHhHhH--hhhhHHHHhhhhHHHhhhhhccccchhh
Q 003941 72 EIERYKAEIKRLQESEAEIKA--LSVNYAALLKEKEEQISRLNGEYGLLKQ 120 (784)
Q Consensus 72 eie~ykaei~~lq~seaeika--ls~nyaallkekedqi~rl~~engslk~ 120 (784)
=|-+.=.+|=-.=.|-.++-- ++|-|--+--||-.-+--+.+-|=++..
T Consensus 112 IipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvhe 162 (607)
T KOG0240|consen 112 IIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHE 162 (607)
T ss_pred cHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCceeec
Confidence 355665565433333333322 5678888888887766555555544443
No 134
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.31 E-value=4.3 Score=40.48 Aligned_cols=104 Identities=26% Similarity=0.308 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHH
Q 003941 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDL 389 (784)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL 389 (784)
..+.++...+..++.|...+...++++-..|..+-.. .+.++..+......|
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~----------------------------l~~l~~~~~~~~~~l 118 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDE----------------------------LQELEKELSEKERRL 118 (194)
T ss_dssp ---------------------------------------------------------------------------HHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccc----------------------------cchhhhhHHHHHHHH
Confidence 3566777777778888777777777766666554111 222222333334444
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 390 KETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 452 (784)
Q Consensus 390 ~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~ 452 (784)
.....++..+..++..|...+-++ .+.|+.|..+.-....+...+|..+..-
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek-----------~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEK-----------NKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444333 3556677777777777778877776654
No 135
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=89.96 E-value=5.7 Score=43.10 Aligned_cols=143 Identities=23% Similarity=0.253 Sum_probs=96.6
Q ss_pred HHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhH-----hhHHHHHH
Q 003941 264 ELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLK-----MEKTELVA 338 (784)
Q Consensus 264 ~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk-----~~~~eL~a 338 (784)
+|+.+-||. -+-....+|.+||.++...|..+|.+|+.|---.++.+-..|-.---+|..||..|- ..+-+|+.
T Consensus 165 qlR~~llDP-Ainl~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~Gria~Le~ 243 (330)
T KOG2991|consen 165 QLRSTLLDP-AINLFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASEGRIAELEI 243 (330)
T ss_pred HHHHHhhCh-HHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhcccHHHHHH
Confidence 466666665 355677899999999999999999999999877777777777777777888888764 44667887
Q ss_pred HHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003941 339 ALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 339 ~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 414 (784)
.|. |.++....+.-.-++++.-.. .++ .--|-|.+++=.|...|++++.|+.++.+++..+.|..-++-
T Consensus 244 eLA-mQKs~seElkssq~eL~dfm~-eLd-----edVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav~d~~ 312 (330)
T KOG2991|consen 244 ELA-MQKSQSEELKSSQEELYDFME-ELD-----EDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAVGDKK 312 (330)
T ss_pred HHH-HHHhhHHHHHHhHHHHHHHHH-HHH-----HHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 775 444433333322222221111 111 013345666777888888888888888888888888754443
No 136
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=89.91 E-value=43 Score=41.06 Aligned_cols=82 Identities=23% Similarity=0.150 Sum_probs=54.1
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHH
Q 003941 421 MDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQT 500 (784)
Q Consensus 421 mded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQt 500 (784)
-++=.|+|+-++++|..++.-+.+-+..|++..... +-|+.+.|-+++..-.++..+=--+++.+.|..=|-.
T Consensus 457 neellk~~e~q~~Enk~~~~~~~ekd~~l~~~kq~~-------d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL~i 529 (861)
T PF15254_consen 457 NEELLKVIENQKEENKRLRKMFQEKDQELLENKQQF-------DIETTRIKIEVEEALVNVKSLQFKLEASEKENQILGI 529 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHhhh
Confidence 344578899999999999998999899888765433 3456666665555544444443345555556666666
Q ss_pred HHHHHHHHH
Q 003941 501 ALGQYFAEI 509 (784)
Q Consensus 501 ALgqfqAE~ 509 (784)
.|.|--||+
T Consensus 530 tlrQrDaEi 538 (861)
T PF15254_consen 530 TLRQRDAEI 538 (861)
T ss_pred HHHHHHHHH
Confidence 666665555
No 137
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.81 E-value=30 Score=36.70 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=11.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH
Q 003941 387 KDLKETCSERDKALQELTRLKQ 408 (784)
Q Consensus 387 ~eL~e~~~E~dKa~kEL~RLRq 408 (784)
.++..+..+..++..++.+|+.
T Consensus 81 ~~l~~l~~~~~~l~a~~~~l~~ 102 (423)
T TIGR01843 81 ADAAELESQVLRLEAEVARLRA 102 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555544
No 138
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=89.58 E-value=46 Score=38.54 Aligned_cols=16 Identities=13% Similarity=0.146 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHhhc
Q 003941 577 KLRLAVEQSMTRLNRM 592 (784)
Q Consensus 577 kLR~ALeqsl~RL~~m 592 (784)
+.|+-|..||+|+...
T Consensus 183 ~a~~i~~~aiqr~a~~ 198 (514)
T TIGR03319 183 KAKEILATAIQRYAGD 198 (514)
T ss_pred HHHHHHHHHHHhccch
Confidence 4577899999998543
No 139
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=89.44 E-value=48 Score=38.52 Aligned_cols=107 Identities=25% Similarity=0.248 Sum_probs=56.9
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHHhh-hhhhhHHHh---HHHHHhhc----------hHHHHHHhhcccCccchhhHHHHH
Q 003941 217 RSLAAERAAYESQTRQLRMELEQQR-NKFADVQLK---LQEEQRLN----------ESFQDELKSLKMDKDKTSIEITEM 282 (784)
Q Consensus 217 ~~~aa~qa~~~~~i~~l~~el~~~~-~k~~~~~~~---lqee~k~n----------~~fqe~l~~lk~~~~kts~~~~~~ 282 (784)
-.+.+.||+ +|.||..=++|+. ++.-|..+- -.-...+. ++.-+|+-+| ++.+|.-.+...=
T Consensus 118 Ee~C~eQAa---kIeQLNrLVqQyK~ErE~naiI~Q~re~k~~rleslmdg~l~~~e~~~ee~~sl-~~e~KlLk~~~en 193 (488)
T PF06548_consen 118 EEVCAEQAA---KIEQLNRLVQQYKHERECNAIIAQTREDKILRLESLMDGVLPTEEFIDEEYVSL-MHEHKLLKEKYEN 193 (488)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHcccchhhHHHHHhhhhHHHHHHHhhccccchHHHhhhHhhhh-hhHhhhhhhhccC
Confidence 357789998 6777766555543 222232221 11111121 2344555554 3455555555444
Q ss_pred HHHHhhhHHHHHHHHHHhcccccCCcc-hHHHHHHHHHHHHHHhhh
Q 003941 283 RKELNGKLSELRRLQMELNRREDGDAN-DVVENLKRVVATLEKENN 327 (784)
Q Consensus 283 ~~el~ek~sei~rlq~~l~~~e~e~~~-~~~~sLk~~~~~L~kEn~ 327 (784)
|=|.-.-.=||+++|.||....+-..+ +--+-|-.+|..|+.+..
T Consensus 194 ~pevl~~~~E~k~~qeel~~~~~~~~d~~EkE~Ll~EIq~Lk~qL~ 239 (488)
T PF06548_consen 194 HPEVLKEKIELKRVQEELEEYRNFSFDMGEKEVLLEEIQDLKSQLQ 239 (488)
T ss_pred chHHHhhHhHHHHHHHHHHhccccccCcchHHHHHHHHHHHHHHHH
Confidence 445555566899999999855444333 344555555555555444
No 140
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=89.39 E-value=36 Score=37.09 Aligned_cols=34 Identities=6% Similarity=0.090 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcC
Q 003941 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKSS 347 (784)
Q Consensus 314 sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~ 347 (784)
.....++-|+.+...++.+..+.+.+|...|...
T Consensus 168 ~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 168 PAQKAALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555666666677777778888888887763
No 141
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=89.38 E-value=11 Score=38.86 Aligned_cols=87 Identities=26% Similarity=0.358 Sum_probs=67.3
Q ss_pred HHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 003941 453 LAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEY 532 (784)
Q Consensus 453 ~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~ 532 (784)
.|+|+...|.++.|.+.+...|-.|..++.+.-.+++..+.||--|+++|-- +.+..+.+-++++++.-...
T Consensus 67 ~a~QDqF~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~--------eemQe~i~~L~kev~~~~er 138 (201)
T KOG4603|consen 67 FADQDQFDMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTT--------EEMQEEIQELKKEVAGYRER 138 (201)
T ss_pred eecHHhhcCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999888888889999999999842 22334445677777777777
Q ss_pred HHHhhhHH-HHhhhhH
Q 003941 533 LKNADQRA-EVSRSEK 547 (784)
Q Consensus 533 Lk~a~q~i-e~~~kEK 547 (784)
|+..+.++ .++.++|
T Consensus 139 l~~~k~g~~~vtpedk 154 (201)
T KOG4603|consen 139 LKNIKAGTNHVTPEDK 154 (201)
T ss_pred HHHHHHhcccCCHHHH
Confidence 77777765 3344444
No 142
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=89.31 E-value=59 Score=39.42 Aligned_cols=73 Identities=25% Similarity=0.263 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhh
Q 003941 394 SERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKS 470 (784)
Q Consensus 394 ~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~s 470 (784)
++.|+..+.+.||++-- +-.+.-+++|-+ .+++.+-.+..-..++..+-.++-.+.|....++..++.-+..+
T Consensus 98 ~~~dr~~~~~~~l~~~q-~a~~~~e~~lq~---q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~ 170 (716)
T KOG4593|consen 98 AEVDRKHKLLTRLRQLQ-EALKGQEEKLQE---QLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSEL 170 (716)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666667776653 111111233333 35566655666667777777777777777666666665433333
No 143
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.23 E-value=12 Score=35.85 Aligned_cols=90 Identities=26% Similarity=0.287 Sum_probs=60.5
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH---HHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHh
Q 003941 487 TIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSE---YLKNADQRAEVSRSEKEEILVKLSHSEKMLAE 563 (784)
Q Consensus 487 aleAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~---~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e 563 (784)
+|..++.|+..||.-|..+.++.+. +++++++|+. .++.....+.....+..++-.++...=.++-+
T Consensus 24 ~lr~~E~E~~~l~~el~~l~~~r~~----------l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 24 QLRRLEGELASLQEELARLEAERDE----------LREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7788888888888888888887755 4455555443 23444444555566666666666666666777
Q ss_pred hhhhhhhhHHhHHHHHHHHHHHH
Q 003941 564 GKGRANKLEEDNAKLRLAVEQSM 586 (784)
Q Consensus 564 ~K~~~~KL~eDn~kLR~ALeqsl 586 (784)
.-+.+.-|+-|+.-|+.-+..=+
T Consensus 94 K~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 94 KSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888877654433
No 144
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=89.06 E-value=22 Score=34.74 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=15.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003941 386 EKDLKETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 386 ~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 414 (784)
..++.+.........+||..+..++-+..
T Consensus 80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~ 108 (191)
T PF04156_consen 80 QGELSELQQQLQQLQEELDQLQERIQELE 108 (191)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555544443
No 145
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=88.86 E-value=25 Score=34.50 Aligned_cols=134 Identities=22% Similarity=0.342 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhccccc
Q 003941 226 YESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRRED 305 (784)
Q Consensus 226 ~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~ 305 (784)
...+|..+|+.+..-+.+++.++.+|..-.-+.+-+.. +|-+-.-++...+...+.|+-.|+.+|....+.
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~------iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~--- 74 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHL------IDFEQLKIENQQLNEKIEERNKELLKLKKKIGK--- 74 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 45678888888888888888888887765555544321 344445567788888999999999999876433
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHH
Q 003941 306 GDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKL 385 (784)
Q Consensus 306 e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L 385 (784)
..-.+..+|.-+..+..++..++.++.. .+..+..+
T Consensus 75 --~v~~L~h~keKl~~~~~~~~~l~~~l~~------------------------------------------~~~~~~~~ 110 (177)
T PF13870_consen 75 --TVQILTHVKEKLHFLSEELERLKQELKD------------------------------------------REEELAKL 110 (177)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------------HHHHHHHH
Confidence 1123444444444444444333333322 22235677
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003941 386 EKDLKETCSERDKALQELTRLKQHLIE 412 (784)
Q Consensus 386 ~~eL~e~~~E~dKa~kEL~RLRqHLLe 412 (784)
+.+|.....+++++.+...+|++..=.
T Consensus 111 r~~l~~~k~~r~k~~~~~~~l~~~~~~ 137 (177)
T PF13870_consen 111 REELYRVKKERDKLRKQNKKLRQQGGL 137 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777888888899999999999877433
No 146
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=88.65 E-value=31 Score=35.34 Aligned_cols=172 Identities=18% Similarity=0.223 Sum_probs=91.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003941 382 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKM 461 (784)
Q Consensus 382 l~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~ 461 (784)
+..|+++|.+++.+.+....|..-||+-..--+. +-.+.+.... +|=+-.-.+
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~k-AL~k~e~~e~---~Lpqll~~h----------------------- 66 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEK-ALQKYEDTEA---ELPQLLQRH----------------------- 66 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhh---hHHHHHHHH-----------------------
Confidence 3567888888888888888888877764332110 1112221100 111111111
Q ss_pred hchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003941 462 MNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAE 541 (784)
Q Consensus 462 ~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie 541 (784)
.+|+..+++.+...+.+.-+.-..+.-++.+|..++..|..+..=++.+-=.++ ..+...+..+...|.+++..|.
T Consensus 67 --~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eR--eeL~~kL~~~~~~l~~~~~ki~ 142 (194)
T PF15619_consen 67 --NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAER--EELQRKLSQLEQKLQEKEKKIQ 142 (194)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 234555555555555555555556666777777777777777666554421111 1223355555666666666665
Q ss_pred HhhhhHHHHH----HhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHH
Q 003941 542 VSRSEKEEIL----VKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQ 584 (784)
Q Consensus 542 ~~~kEKeei~----~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeq 584 (784)
...+..+... ..+....+...++...+..|..++..|+.-|.+
T Consensus 143 ~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE 189 (194)
T PF15619_consen 143 ELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE 189 (194)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5433322221 123444455666666777777777777766643
No 147
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=88.28 E-value=27 Score=38.07 Aligned_cols=33 Identities=24% Similarity=0.352 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003941 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 377 eme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqH 409 (784)
+|+.+|..|+.-+.++..+..++.-|+.|+|-.
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek 81 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEK 81 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777777777777777777777755
No 148
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.25 E-value=59 Score=38.07 Aligned_cols=6 Identities=17% Similarity=-0.208 Sum_probs=2.9
Q ss_pred ccccCC
Q 003941 29 KIYDSR 34 (784)
Q Consensus 29 ~~~~~~ 34 (784)
.|+||+
T Consensus 32 ~i~G~N 37 (650)
T TIGR03185 32 LIGGLN 37 (650)
T ss_pred EEECCC
Confidence 455554
No 149
>PLN02939 transferase, transferring glycosyl groups
Probab=88.25 E-value=81 Score=39.65 Aligned_cols=293 Identities=24% Similarity=0.257 Sum_probs=155.9
Q ss_pred hHHHHHHhhcccCccch------hhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhh
Q 003941 259 ESFQDELKSLKMDKDKT------SIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKME 332 (784)
Q Consensus 259 ~~fqe~l~~lk~~~~kt------s~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~ 332 (784)
+-+|.+++.|.|.-..| +.+ .++|-||.+.. +..|..+|.-+. .+.+-.+.+|-..+..|++||-.||.-
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (977)
T PLN02939 166 EALQGKINILEMRLSETDARIKLAAQ-EKIHVEILEEQ--LEKLRNELLIRG-ATEGLCVHSLSKELDVLKEENMLLKDD 241 (977)
T ss_pred HHHHhhHHHHHHHhhhhhhhhhhhhh-ccccchhhHHH--HHHHhhhhhccc-cccccccccHHHHHHHHHHHhHHHHHH
Confidence 56788999998865543 222 45666766543 334555555432 333447888999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHH
Q 003941 333 KTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKA-------LQELTR 405 (784)
Q Consensus 333 ~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa-------~kEL~R 405 (784)
+.-|.++|.....| ++ +. -.++| ...-|+.++..|+..+..++...-|+ -=|-.-
T Consensus 242 ~~~~~~~~~~~~~~--~~----------~~-~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (977)
T PLN02939 242 IQFLKAELIEVAET--EE----------RV-FKLEK-----ERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVE 303 (977)
T ss_pred HHHHHHHHHHHHhh--hH----------HH-HHHHH-----HHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHH
Confidence 99999998877655 11 10 01221 12245666677777776665543322 111111
Q ss_pred HHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhH
Q 003941 406 LKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCM 485 (784)
Q Consensus 406 LRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~m 485 (784)
==|+||+.-....+++ +--| +.+...+.+|..||..|+.+.... + ...-+..+.+.+..|..+|.+|.
T Consensus 304 ~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~ 371 (977)
T PLN02939 304 NLQDLLDRATNQVEKA------ALVL-DQNQDLRDKVDKLEASLKEANVSK--F---SSYKVELLQQKLKLLEERLQASD 371 (977)
T ss_pred HHHHHHHHHHHHHHHH------HHHh-ccchHHHHHHHHHHHHHHHhhHhh--h---hHHHHHHHHHHHHHHHHHHHhhH
Confidence 1245555543221111 1111 246667888999999888764421 1 12233445566666666666665
Q ss_pred HHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHH-HHHHhhhHHHHHHHhh
Q 003941 486 RTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKE-EILVKLSHSEKMLAEG 564 (784)
Q Consensus 486 ealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKe-ei~~KLs~~E~~l~e~ 564 (784)
+.| ++-+.-|+++++. +..-|-.+.++..+-+ .+.-+...-.|-- +++.. +..+.-+.
T Consensus 372 ~~~----------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lll~---id~~~~~~ 430 (977)
T PLN02939 372 HEI----------HSYIQLYQESIKE---FQDTLSKLKEESKKRS-----LEHPADDMPSEFWSRILLL---IDGWLLEK 430 (977)
T ss_pred HHH----------HHHHHHHHHHHHH---HHHHHHHHHhhhhccc-----ccCchhhCCHHHHHHHHHH---HHHHHHhc
Confidence 433 3455667666643 1111111111111100 0000011011100 01111 12221111
Q ss_pred hhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHH
Q 003941 565 KGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLV 610 (784)
Q Consensus 565 K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLL 610 (784)
+- -.+|+..||+.+-..-.++..+-++.-..=|+.||..++-
T Consensus 431 ~~----~~~~a~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (977)
T PLN02939 431 KI----SNNDAKLLREMVWKRDGRIREAYLSCKGKNEREAVENFLK 472 (977)
T ss_pred cC----ChhhHHHHHHHHHhhhhhHHHHHHHHhcCchHHHHHHHHH
Confidence 00 1278888888887777777777666667778899988873
No 150
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=88.18 E-value=86 Score=39.87 Aligned_cols=68 Identities=13% Similarity=0.238 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHh
Q 003941 313 ENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKET 392 (784)
Q Consensus 313 ~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~ 392 (784)
+..+...+.+++..+++-.+..++...|+...... ++ .... -| ..++|+.+.....+|.+.
T Consensus 61 ~~~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~-----~~---~~~~----------~s-~~~Leq~l~~~~~~L~~~ 121 (1109)
T PRK10929 61 KGSLERAKQYQQVIDNFPKLSAELRQQLNNERDEP-----RS---VPPN----------MS-TDALEQEILQVSSQLLEK 121 (1109)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc-----cc---cccc----------CC-HHHHHHHHHHHHHHHHHH
Confidence 33444555566666666666777777777654331 00 0000 01 356777666666666666
Q ss_pred HHHHHHH
Q 003941 393 CSERDKA 399 (784)
Q Consensus 393 ~~E~dKa 399 (784)
+......
T Consensus 122 q~~l~~~ 128 (1109)
T PRK10929 122 SRQAQQE 128 (1109)
T ss_pred HHHHHHH
Confidence 5444433
No 151
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=88.12 E-value=55 Score=37.57 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 003941 380 QSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 380 ~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~ 415 (784)
..+..++.+|+++..+++++.+.|..+...|-..+.
T Consensus 73 ~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 73 TEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 335777778888888888888888888887766654
No 152
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=88.09 E-value=4.6 Score=34.94 Aligned_cols=43 Identities=33% Similarity=0.454 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003941 497 NLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEV 542 (784)
Q Consensus 497 NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~ 542 (784)
+||+||+ +|+-|+.-+..||..++..+-.+...|++|..+...
T Consensus 1 elQsaL~---~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~e 43 (61)
T PF08826_consen 1 ELQSALE---AEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRE 43 (61)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899884 899999999999998888888777777777666433
No 153
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.98 E-value=26 Score=35.80 Aligned_cols=67 Identities=21% Similarity=0.228 Sum_probs=40.6
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHh
Q 003941 487 TIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVK 553 (784)
Q Consensus 487 aleAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~K 553 (784)
-|.....++..|+..|.+|..+.-+-..+...+....+++..|.-.-..-.++.+...+|+.++..+
T Consensus 63 pL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~k 129 (201)
T PF13851_consen 63 PLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRK 129 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455778888888888887766555555555555555555544444455555555666665555
No 154
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=87.34 E-value=14 Score=40.95 Aligned_cols=84 Identities=21% Similarity=0.328 Sum_probs=51.5
Q ss_pred HHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhh-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q 003941 466 EIQKSKEIIDGLNNKLANCMRTIEAKNVELLN-LQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSR 544 (784)
Q Consensus 466 E~~~ske~iedL~~~L~~~mealeAKnvEl~N-LQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~ 544 (784)
..-..+.+++.|.+++...++.|.++-.-|+| |..-+. +.+.++.++..+....+.+...+....
T Consensus 235 ~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~--------------eYr~~~~~ls~~~~~y~~~s~~V~~~t 300 (359)
T PF10498_consen 235 ALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQ--------------EYRSAQDELSEVQEKYKQASEGVSERT 300 (359)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--------------HHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34556778888888899899999887665544 333334 444455555555555556666665555
Q ss_pred hhHHHHHHhhhHHHHHHHh
Q 003941 545 SEKEEILVKLSHSEKMLAE 563 (784)
Q Consensus 545 kEKeei~~KLs~~E~~l~e 563 (784)
++...|..+|.+......+
T Consensus 301 ~~L~~IseeLe~vK~emee 319 (359)
T PF10498_consen 301 RELAEISEELEQVKQEMEE 319 (359)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6655666665555544433
No 155
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=87.26 E-value=88 Score=38.98 Aligned_cols=49 Identities=8% Similarity=0.043 Sum_probs=32.4
Q ss_pred HHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHH
Q 003941 285 ELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAA 339 (784)
Q Consensus 285 el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~ 339 (784)
.|...+..+..++..+...+ .+..++..++.++.....++..+..+...
T Consensus 597 ~l~~~~~~~~~~~~~l~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 645 (1047)
T PRK10246 597 DIQPWLDAQEEHERQLRLLS------QRHELQGQIAAHNQQIIQYQQQIEQRQQQ 645 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555433 25777888888888888888888887777
No 156
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=86.66 E-value=39 Score=40.75 Aligned_cols=158 Identities=13% Similarity=0.200 Sum_probs=84.5
Q ss_pred HHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHh
Q 003941 221 AERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMEL 300 (784)
Q Consensus 221 a~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l 300 (784)
.++...+.-++.|+.+.+++..++.+++-+...=+..-+-+.+. --++.+-|+.|..++..+.++=..
T Consensus 558 ~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR-----------~e~a~d~Qe~L~~R~~~vl~~l~~- 625 (717)
T PF10168_consen 558 LAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAER-----------YEEAKDKQEKLMKRVDRVLQLLNS- 625 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 34555566677777777777777766654433222221222211 123445566666665555432221
Q ss_pred cccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHH
Q 003941 301 NRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQ 380 (784)
Q Consensus 301 ~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~ 380 (784)
....-++.=...+.+++.++.+...|+..+..+..++..-+.....+- . ...++..+|.+
T Consensus 626 ---~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~-------~-----~~~~s~~L~~~----- 685 (717)
T PF10168_consen 626 ---QLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQK-------S-----PKKKSIVLSES----- 685 (717)
T ss_pred ---cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------c-----ccCCCccCCHH-----
Confidence 112233344445555555555555566666666665554332211110 0 11122233332
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 381 SLQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 381 sl~~L~~eL~e~~~E~dKa~kEL~RLRqHL 410 (784)
+....+..|++.-.+++.+.+++.+++.|+
T Consensus 686 Q~~~I~~iL~~~~~~I~~~v~~ik~i~~~~ 715 (717)
T PF10168_consen 686 QKRTIKEILKQQGEEIDELVKQIKNIKKIV 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356778889999999999999999999884
No 157
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=86.45 E-value=55 Score=35.80 Aligned_cols=42 Identities=21% Similarity=0.300 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhh
Q 003941 523 REESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEG 564 (784)
Q Consensus 523 ree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~ 564 (784)
+.++..+...|..-...|+....+|.++...+..++++..+-
T Consensus 224 ~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~ 265 (312)
T smart00787 224 VKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQC 265 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444555555555555555555555555566555443
No 158
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=86.38 E-value=84 Score=39.71 Aligned_cols=157 Identities=23% Similarity=0.300 Sum_probs=77.7
Q ss_pred CchhHHHHHHHHHHHHHHHhH--------HH------HHHHHHHHHHHHHHHHHHhhhh-----hhhhhhhhHHHHHHHH
Q 003941 373 PGKEEMEQSLQKLEKDLKETC--------SE------RDKALQELTRLKQHLIEKAQEE-----SEKMDEDSKIIEELRE 433 (784)
Q Consensus 373 ~~kEeme~sl~~L~~eL~e~~--------~E------~dKa~kEL~RLRqHLLe~E~Ee-----~ekmded~k~IeELre 433 (784)
|.+-.||.++-+|+=.-.+-+ +- .--...|+.|||+.|.+..+-. ++.+-.++..-.+.-+
T Consensus 369 Pa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~ 448 (1041)
T KOG0243|consen 369 PAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAE 448 (1041)
T ss_pred CCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHH
Confidence 566778878877654432211 00 1113457888888888876522 2444222111122222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhh
Q 003941 434 NNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKG 513 (784)
Q Consensus 434 enE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~E 513 (784)
.++.+..+|..+++.++.-.+... +.. +.-.+|+.++..+-..|..++.+|.+++.=+.+-.+....++
T Consensus 449 ~ieele~el~~~~~~l~~~~e~~~-----~~~------~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e 517 (1041)
T KOG0243|consen 449 QIEELEEELENLEKQLKDLTELYM-----NQL------EIKELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEE 517 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-----hHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544322211 111 223345555555555666677777777777777777755554
Q ss_pred hhHHHHHHHHHH----HHHHHHHHHHhhhHH
Q 003941 514 HLERELALAREE----SAKLSEYLKNADQRA 540 (784)
Q Consensus 514 rLe~ELa~aree----~a~Ls~~Lk~a~q~i 540 (784)
.+-..+-..-.. ..+|-..|..+...+
T Consensus 518 ~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~ 548 (1041)
T KOG0243|consen 518 EIISQQEKSEEKLVDRATKLRRSLEESQDDL 548 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333332222 333444444444443
No 159
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=85.95 E-value=58 Score=35.59 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=22.6
Q ss_pred HHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHH
Q 003941 466 EIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAE 508 (784)
Q Consensus 466 E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE 508 (784)
-++.++.++.++..+|+........++-.+..|+..+.+..+.
T Consensus 255 ~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~ 297 (444)
T TIGR03017 255 IIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQ 297 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Confidence 4555666666666666655444444444555555444444443
No 160
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=85.57 E-value=78 Score=36.73 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=16.9
Q ss_pred HHHHHHHHHhhhHHhHhHhhhhH
Q 003941 75 RYKAEIKRLQESEAEIKALSVNY 97 (784)
Q Consensus 75 ~ykaei~~lq~seaeikals~ny 97 (784)
++..+|..|.+--.+|..++|++
T Consensus 26 ~~~~~i~~Le~~k~~l~~~pv~~ 48 (569)
T PRK04778 26 RNYKRIDELEERKQELENLPVND 48 (569)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHH
Confidence 45667777777777787777764
No 161
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=85.35 E-value=47 Score=34.05 Aligned_cols=49 Identities=35% Similarity=0.497 Sum_probs=41.6
Q ss_pred HHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHh
Q 003941 283 RKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 283 ~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~ 343 (784)
|.=|++++..|.+|+-+| .-|+..++.|.+||.+|+.-...-+.+|...
T Consensus 4 ~rvlSar~~ki~~L~n~l------------~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~ 52 (194)
T PF15619_consen 4 QRVLSARLHKIKELQNEL------------AELQRKLQELRKENKTLKQLQKRQEKALQKY 52 (194)
T ss_pred HHHHHhhHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788889999998765 4689999999999999999888888888665
No 162
>PLN03188 kinesin-12 family protein; Provisional
Probab=85.16 E-value=1.3e+02 Score=38.95 Aligned_cols=63 Identities=25% Similarity=0.374 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHH
Q 003941 516 ERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAV 582 (784)
Q Consensus 516 e~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~AL 582 (784)
|.|-+..+.++..|-..|.+--.+ ++=.=+++-+|..+|--..-++.+...++++++++.+.+
T Consensus 1172 eker~~~~~enk~l~~qlrdtaea----v~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~ 1234 (1320)
T PLN03188 1172 EKERRYLRDENKSLQAQLRDTAEA----VQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQI 1234 (1320)
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777777766444332221 222223445555555555555555666666666666644
No 163
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=84.84 E-value=3.9 Score=47.50 Aligned_cols=135 Identities=23% Similarity=0.282 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHhhhHHHHHHHHHHhccccc----------------CCcc--hHHHHHHHHHHHHHHhhhhhHhhHHH
Q 003941 274 KTSIEITEMRKELNGKLSELRRLQMELNRRED----------------GDAN--DVVENLKRVVATLEKENNSLKMEKTE 335 (784)
Q Consensus 274 kts~~~~~~~~el~ek~sei~rlq~~l~~~e~----------------e~~~--~~~~sLk~~~~~L~kEn~tlk~~~~e 335 (784)
+....++.|+++..+.+.+|..|+..+-.--+ .+.. +-++.|+..|..|++|.+.-..+..+
T Consensus 88 ~L~~~le~l~~~~~eR~~~~~~L~~~~~~l~~~Lg~~~~~~~~~~~~~~~l~S~~~l~~l~~~l~~L~~e~~~R~~~v~~ 167 (619)
T PF03999_consen 88 KLRPQLEELRKEKEERMQEFKELQEQLEQLCEELGELPLCLNPFDIDESDLPSLEELEELRQHLQRLQEEKERRLEEVRE 167 (619)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666676666666666665543311110 1111 35666777777777777777666777
Q ss_pred HHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003941 336 LVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 336 L~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~ 413 (784)
|...|..+-..++-... .+..........+....|+-..+. +..|..-+.....+.......+..|+..+...
T Consensus 168 l~~~I~~l~~~L~~~~~--~~~~e~~l~~~~~~~~~~~Ls~~~---l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~L 240 (619)
T PF03999_consen 168 LREEIISLMEELGIDPE--RTSFEKDLLSYSEDEESFCLSDEN---LEKLQELLQELEEEKEEREEKLQELREKIEEL 240 (619)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhCCCcc--cccchhhccccccccccCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666666555554332 111111111101223445544443 34444444444445666666677777665543
No 164
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=84.80 E-value=8.4 Score=34.19 Aligned_cols=69 Identities=30% Similarity=0.270 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHH
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKE 391 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e 391 (784)
+.-.-..|..|+|||=+||+.+--|+..|..+ .|+ +.++ +.++..+
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~--------~~~-------------------~~~~-------~~keNie 47 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKL--------GPE-------------------SIEE-------LLKENIE 47 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc--------ccc-------------------cHHH-------HHHHHHH
Confidence 34456789999999999999999999999844 111 2223 3445556
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 003941 392 TCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 392 ~~~E~dKa~kEL~RLRqHLLe~E 414 (784)
+..++.-+.+||.++++.|.+.+
T Consensus 48 LKve~~~L~~el~~~~~~l~~a~ 70 (75)
T PF07989_consen 48 LKVEVESLKRELQEKKKLLKEAE 70 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777788888887776654
No 165
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=84.51 E-value=1.1e+02 Score=37.57 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003941 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLA 454 (784)
Q Consensus 375 kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a 454 (784)
-.++|..+..|+.+|.-+..-.-.+..+|...+...= .++-. ..++..+++.....|+.||..|-++++
T Consensus 626 L~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e--------~le~~---~~~~e~E~~~l~~Ki~~Le~Ele~er~ 694 (769)
T PF05911_consen 626 LKESEQKLEELQSELESAKESNSLAETQLKAMKESYE--------SLETR---LKDLEAEAEELQSKISSLEEELEKERA 694 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666666666544434444444444333211 11111 123444666777778888888877766
Q ss_pred HHHH
Q 003941 455 KQEE 458 (784)
Q Consensus 455 ~qee 458 (784)
...+
T Consensus 695 ~~~e 698 (769)
T PF05911_consen 695 LSEE 698 (769)
T ss_pred cchh
Confidence 5554
No 166
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.40 E-value=45 Score=33.00 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=14.6
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHh
Q 003941 319 VATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 319 ~~~L~kEn~tlk~~~~eL~a~L~~~ 343 (784)
+...+-+++.|+-.+-.|++.|..+
T Consensus 12 LK~~~~e~dsle~~v~~LEreLe~~ 36 (140)
T PF10473_consen 12 LKESESEKDSLEDHVESLERELEMS 36 (140)
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHH
Confidence 3444555666666666666666655
No 167
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=84.09 E-value=78 Score=38.85 Aligned_cols=69 Identities=26% Similarity=0.308 Sum_probs=47.8
Q ss_pred hhhc-hHHHHhhHHHHHhhhhhHHHh-----HHHHHhh---hhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 003941 460 KMMN-HSEIQKSKEIIDGLNNKLANC-----MRTIEAK---NVELLNLQTALGQYFAEIEAKGHLERELALAREESAK 528 (784)
Q Consensus 460 k~~n-~~E~~~ske~iedL~~~L~~~-----mealeAK---nvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~ 528 (784)
.+.+ ...++++.++++++++.|.-. |+.--++ ++.=.=||-+|+.-.+..|-+++|.++++.++.-+..
T Consensus 157 ~~~~~eer~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~ 234 (916)
T KOG0249|consen 157 HSGNIEERTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEE 234 (916)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 456788899999998888764 3322222 2222668899999999888888888888877665553
No 168
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=83.55 E-value=78 Score=35.13 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
.+.+|+.....|+.|..+++..-..|...+..+|..
T Consensus 28 ~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~ 63 (310)
T PF09755_consen 28 RIESLQQENRVLKRELETEKARCKHLQEENRALREA 63 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666667777777777665
No 169
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=83.53 E-value=10 Score=40.97 Aligned_cols=77 Identities=26% Similarity=0.308 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHH
Q 003941 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDL 389 (784)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL 389 (784)
-.++.|+..++.+++|.++|..-...|. .. ++.+ ..-.+++..++.|+.+-
T Consensus 9 ~l~~~l~~~~~~~~~E~~~Y~~fL~~l~----~~--------------------~~~~-----~~~~~~~~el~~le~Ee 59 (314)
T PF04111_consen 9 LLLEQLDKQLEQAEKERDTYQEFLKKLE----EE--------------------SDSE-----EDIEELEEELEKLEQEE 59 (314)
T ss_dssp ---------------------------------------------------------H-----H--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----hc--------------------CCcc-----hHHHHHHHHHHHHHHHH
Confidence 3677888888888888888766555554 00 0000 01345566667777777
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhh
Q 003941 390 KETCSERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 390 ~e~~~E~dKa~kEL~RLRqHLLe~E~ 415 (784)
.++..|..++.+|...|.+.+-+.+.
T Consensus 60 ~~l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 60 EELLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777666554
No 170
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.53 E-value=9.4 Score=38.13 Aligned_cols=75 Identities=27% Similarity=0.375 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 374 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 452 (784)
Q Consensus 374 ~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~ 452 (784)
...+++..+..++.||.+++..+..+.+-|..+-.-|=..+ .++......|.+|+.++...+..|.+|+..|+..
T Consensus 68 ~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~----~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek 142 (194)
T PF08614_consen 68 QISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELE----KELSEKERRLAELEAELAQLEEKIKDLEEELKEK 142 (194)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccchhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677788888888887777766666666555543332 2444555667777777767777777766666643
No 171
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=83.25 E-value=48 Score=32.42 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHh
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~ 343 (784)
+..++..+..+.+|...+.....++...+..+
T Consensus 83 ~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~ 114 (191)
T PF04156_consen 83 LSELQQQLQQLQEELDQLQERIQELESELEKL 114 (191)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555
No 172
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=82.70 E-value=1.3e+02 Score=36.87 Aligned_cols=89 Identities=26% Similarity=0.265 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--H----HHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHH----
Q 003941 435 NEYQRAQILHLENVLKQTLAK--Q----EEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQ---- 504 (784)
Q Consensus 435 nE~~R~~Is~lEraLK~~~a~--q----eelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgq---- 504 (784)
+.-+|.||-||.++....+.. + ..+....+.+...+-++|-+|+--|.++ ..+|+=|.+||-.
T Consensus 547 ~~~irdQikhL~~av~~t~e~srq~~~~~~~~~~~d~d~e~l~eqilKLKSLLSTK-------REQIaTLRTVLKANKqT 619 (717)
T PF09730_consen 547 VAIIRDQIKHLQRAVDRTTELSRQRVASRSSASEADKDKEELQEQILKLKSLLSTK-------REQIATLRTVLKANKQT 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCcccccHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 567899999988887754321 1 1112223456666777888886555544 4444444444433
Q ss_pred -----------HHHHH----HHhhhhHHHHHHHHHHHHHHH
Q 003941 505 -----------YFAEI----EAKGHLERELALAREESAKLS 530 (784)
Q Consensus 505 -----------fqAE~----EA~ErLe~ELa~aree~a~Ls 530 (784)
|..|. |-...|+.||.+++++.|..+
T Consensus 620 AEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFs 660 (717)
T PF09730_consen 620 AEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFS 660 (717)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 222456666666666655544
No 173
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=82.38 E-value=1.4e+02 Score=37.34 Aligned_cols=56 Identities=27% Similarity=0.271 Sum_probs=34.3
Q ss_pred HHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHH
Q 003941 285 ELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAAL 340 (784)
Q Consensus 285 el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L 340 (784)
+++.-.++|..||.+|.+.-..+-++.+.+|+-.+.+|+..+..+-.++.+-...+
T Consensus 331 ~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~ 386 (913)
T KOG0244|consen 331 EMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVTLEETLDALLQEKGEERSTL 386 (913)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhh
Confidence 33334456667777777765433445777777777777777766666555444333
No 174
>PRK00106 hypothetical protein; Provisional
Probab=82.31 E-value=1.1e+02 Score=36.01 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhhc
Q 003941 577 KLRLAVEQSMTRLNRM 592 (784)
Q Consensus 577 kLR~ALeqsl~RL~~m 592 (784)
+.|.-+..||+|+...
T Consensus 204 ~a~~ii~~aiqr~a~~ 219 (535)
T PRK00106 204 MAKDLLAQAMQRLAGE 219 (535)
T ss_pred HHHHHHHHHHHHhcch
Confidence 4577788999988543
No 175
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.26 E-value=19 Score=41.51 Aligned_cols=30 Identities=23% Similarity=0.358 Sum_probs=18.6
Q ss_pred HHHHhhhhhHhhHHHHHHHHHHHHHHhhhh
Q 003941 486 RTIEAKNVELLNLQTALGQYFAEIEAKGHL 515 (784)
Q Consensus 486 ealeAKnvEl~NLQtALgqfqAE~EA~ErL 515 (784)
+++.+++..|.-||.-|...-.-+||+..|
T Consensus 428 ~~~~s~d~~I~dLqEQlrDlmf~le~qqkl 457 (493)
T KOG0804|consen 428 EALGSKDEKITDLQEQLRDLMFFLEAQQKL 457 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhHheehhhhhhh
Confidence 355666667777777777666666664333
No 176
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=82.16 E-value=1.3e+02 Score=36.74 Aligned_cols=32 Identities=31% Similarity=0.431 Sum_probs=27.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 003941 383 QKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 383 ~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~ 415 (784)
..|..||.-.+.|||++..||. |=.|||.-+.
T Consensus 474 ~dL~~ELqqLReERdRl~aeLq-lSa~liqqeV 505 (739)
T PF07111_consen 474 TDLSLELQQLREERDRLDAELQ-LSARLIQQEV 505 (739)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 3457778899999999999998 8899997764
No 177
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=82.08 E-value=82 Score=34.28 Aligned_cols=63 Identities=24% Similarity=0.320 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHH
Q 003941 516 ERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKL 578 (784)
Q Consensus 516 e~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kL 578 (784)
+..|+..+.++..+...|.......+...+|+..+...+...+..+.-+...+.-|..+...-
T Consensus 234 ~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~RW 296 (344)
T PF12777_consen 234 EEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKERW 296 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhhH
Confidence 344444444444444444444444444444554444444444444444444444444444433
No 178
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=81.79 E-value=54 Score=32.02 Aligned_cols=8 Identities=25% Similarity=0.397 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 003941 556 HSEKMLAE 563 (784)
Q Consensus 556 ~~E~~l~e 563 (784)
|+++....
T Consensus 112 ~~eRkv~~ 119 (143)
T PF12718_consen 112 HFERKVKA 119 (143)
T ss_pred HHHHHHHH
Confidence 33333333
No 179
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=81.35 E-value=51 Score=31.48 Aligned_cols=42 Identities=19% Similarity=0.245 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003941 501 ALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEV 542 (784)
Q Consensus 501 ALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~ 542 (784)
-|.++..+.+-.+.|...+...+.++..|.......+..++.
T Consensus 43 Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~ 84 (151)
T PF11559_consen 43 LLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEE 84 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344444455444444444444444444444333333333333
No 180
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=80.99 E-value=5.7 Score=46.93 Aligned_cols=80 Identities=26% Similarity=0.398 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHH
Q 003941 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDL 389 (784)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL 389 (784)
..|+.|++.+..|+.++..++.++..|++.|.+++...-.+..-+ . --+.++.....|+++|
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~-----------r-------ei~~~~~~I~~L~~~L 490 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKD-----------R-------EIRARDRRIERLEKEL 490 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------H-------HHHHHHHHHHHHHHHH
Confidence 366777777777777777777777777777777765533222111 0 1345666667777777
Q ss_pred HHhHHHHHHHHHHHHHHH
Q 003941 390 KETCSERDKALQELTRLK 407 (784)
Q Consensus 390 ~e~~~E~dKa~kEL~RLR 407 (784)
.+....++.+..+|.+||
T Consensus 491 ~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 491 EEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777777776
No 181
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.91 E-value=2.9 Score=45.04 Aligned_cols=86 Identities=23% Similarity=0.350 Sum_probs=56.9
Q ss_pred HHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcc--hHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 003941 261 FQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDAN--DVVENLKRVVATLEKENNSLKMEKTELVA 338 (784)
Q Consensus 261 fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~--~~~~sLk~~~~~L~kEn~tlk~~~~eL~a 338 (784)
++++|+.|+-+......++.++.+|-.+=..||..|+.++..-+.++.. .....++..+..+.++...++.+|.-...
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555555444333333 36677888999999999999999999999
Q ss_pred HHHHhhhc
Q 003941 339 ALEKNRKS 346 (784)
Q Consensus 339 ~L~~~r~t 346 (784)
.|+.+|+|
T Consensus 128 ~L~~L~kt 135 (314)
T PF04111_consen 128 QLDRLRKT 135 (314)
T ss_dssp HHHCHHT-
T ss_pred HHHHHHhc
Confidence 99999998
No 182
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=80.89 E-value=1.1e+02 Score=35.20 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003941 381 SLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 381 sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 414 (784)
.+..++++|.+...+.....+++..|+..+-+.+
T Consensus 169 ~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe 202 (563)
T TIGR00634 169 AWLKARQQLKDRQQKEQELAQRLDFLQFQLEELE 202 (563)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666776666655554
No 183
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=80.43 E-value=82 Score=38.14 Aligned_cols=59 Identities=14% Similarity=0.225 Sum_probs=32.7
Q ss_pred hHHHHHhhhhhHhh-HHHHHHHHHH----HHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003941 484 CMRTIEAKNVELLN-LQTALGQYFA----EIEAKGHLERELALAREESAKLSEYLKNADQRAEV 542 (784)
Q Consensus 484 ~mealeAKnvEl~N-LQtALgqfqA----E~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~ 542 (784)
.++.+..+...|.+ ++.+|....+ =++|......||...+..+..|...|+.++.+.+.
T Consensus 601 R~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 601 RYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333 4444444433 23455566777777777777777777776666543
No 184
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=80.32 E-value=1.3e+02 Score=35.41 Aligned_cols=150 Identities=24% Similarity=0.317 Sum_probs=82.5
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhh--hHhhHHHHH
Q 003941 425 SKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNV--ELLNLQTAL 502 (784)
Q Consensus 425 ~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnv--El~NLQtAL 502 (784)
...|-+|.-.|-|+...|-.|+-. ..+|.-+ -.=|.++++-|++|-.+=-+.| |+-.++ -|.|||-||
T Consensus 330 q~~IqdLq~sN~yLe~kvkeLQ~k----~~kQqvf----vDiinkLk~niEeLIedKY~vi--LEKnd~~k~lqnLqe~l 399 (527)
T PF15066_consen 330 QNRIQDLQCSNLYLEKKVKELQMK----ITKQQVF----VDIINKLKENIEELIEDKYRVI--LEKNDIEKTLQNLQEAL 399 (527)
T ss_pred HHHHHHhhhccHHHHHHHHHHHHH----hhhhhHH----HHHHHHHHHHHHHHHHhHhHhh--hhhhhHHHHHHHHHHHH
Confidence 345777887888888877775532 2222211 1224566666666532222221 232222 578888888
Q ss_pred HHHHHHHH----HhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHH
Q 003941 503 GQYFAEIE----AKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKL 578 (784)
Q Consensus 503 gqfqAE~E----A~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kL 578 (784)
..-+.... .++.|.-++..++..-++|-+ +.-.-..+|+..+...-...+.|...-+.+.+|..--..|
T Consensus 400 a~tqk~LqEsr~eKetLqlelkK~k~nyv~LQE-------ry~~eiQqKnksvsqclEmdk~LskKeeeverLQ~lkgel 472 (527)
T PF15066_consen 400 ANTQKHLQESRNEKETLQLELKKIKANYVHLQE-------RYMTEIQQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGEL 472 (527)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 76654431 234555555555444444332 2222235555555554556666666555555555555555
Q ss_pred HHHHHHHHHHHhh
Q 003941 579 RLAVEQSMTRLNR 591 (784)
Q Consensus 579 R~ALeqsl~RL~~ 591 (784)
-+|...||.+|.+
T Consensus 473 Ekat~SALdlLkr 485 (527)
T PF15066_consen 473 EKATTSALDLLKR 485 (527)
T ss_pred HHHHHHHHHHHHH
Confidence 5788889999987
No 185
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=80.29 E-value=23 Score=33.55 Aligned_cols=52 Identities=27% Similarity=0.272 Sum_probs=39.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhccc
Q 003941 219 LAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKM 270 (784)
Q Consensus 219 ~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~ 270 (784)
+=...+.++.++..++.+|...+......|-+.+.|--+.-..-+.|..||=
T Consensus 15 ~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~ 66 (132)
T PF07926_consen 15 LKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLRE 66 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3335566778899999999999999999999988887777666665555443
No 186
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=80.27 E-value=80 Score=33.01 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=15.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 003941 429 EELRENNEYQRAQILHLENVLKQTLAKQE 457 (784)
Q Consensus 429 eELreenE~~R~~Is~lEraLK~~~a~qe 457 (784)
++++..+..++.-|..+|+.+.+.++..+
T Consensus 33 ~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~ 61 (207)
T PF05010_consen 33 EELHKENQEMRKIMEEYEKTIAQMIEEKQ 61 (207)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555556655555544433
No 187
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=79.96 E-value=83 Score=33.04 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003941 382 LQKLEKDLKETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 382 l~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 414 (784)
+.=|+..|++++.|...-..|+.-||..|-+..
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~ 44 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELR 44 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 356889999999999999999999999987664
No 188
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=79.71 E-value=1.2e+02 Score=37.30 Aligned_cols=68 Identities=22% Similarity=0.253 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhHHH----------HHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhh-hhH--hhHHHHHHHHHHhh
Q 003941 278 EITEMRKELNGKLSE----------LRRLQMELNRREDGDANDVVENLKRVVATLEKENN-SLK--MEKTELVAALEKNR 344 (784)
Q Consensus 278 ~~~~~~~el~ek~se----------i~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~-tlk--~~~~eL~a~L~~~r 344 (784)
-|+||++|.|..+|+ +--|+.|++.-...++ ...--|+.-++.|+.|-+ .|. +.|-+|..+|+.++
T Consensus 463 ~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~-~~~~~L~eK~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk 541 (762)
T PLN03229 463 MIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQ-LMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLN 541 (762)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccc-cccHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHH
Confidence 456777777776664 3334445555311110 011123333555555433 222 34667777777776
Q ss_pred hc
Q 003941 345 KS 346 (784)
Q Consensus 345 ~t 346 (784)
..
T Consensus 542 ~~ 543 (762)
T PLN03229 542 EF 543 (762)
T ss_pred HH
Confidence 65
No 189
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=79.64 E-value=87 Score=33.06 Aligned_cols=198 Identities=20% Similarity=0.225 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 003941 380 QSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEF 459 (784)
Q Consensus 380 ~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeel 459 (784)
..+..|.+.+.-...+.++++--|.-+.+.|.+.+...+++ ++..++|+- .+...+..+..+|..|+.+...-++-
T Consensus 4 ~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~-er~~Kv~en---r~~kdEE~~e~~e~qLkEAk~iaE~a 79 (205)
T KOG1003|consen 4 ADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADES-ERGMKVIEN---RAQKLEEKMEAQEAQLKEAKHIAEKA 79 (205)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34688888888899999999999999999988877533322 233344442 33334445566666666654333321
Q ss_pred hhhchHHHHh---hHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Q 003941 460 KMMNHSEIQK---SKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNA 536 (784)
Q Consensus 460 k~~n~~E~~~---ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a 536 (784)
--..+.-..+ .....+..-.++.....-+..-..++.++.+-|++|-+--| -+...+-...+.+--|+..|++|
T Consensus 80 drK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee---~~~q~~d~~e~~ik~ltdKLkEa 156 (205)
T KOG1003|consen 80 DRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEE---KLEQKEEKYEEELKELTDKLKEA 156 (205)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHhhh
Confidence 0000000000 01111112122222222222334466777777777755432 23444444555666677777777
Q ss_pred hhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003941 537 DQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 537 ~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 591 (784)
+.+++-.-+ -.++ .++..-+|...+.-.......+...|++++.-|+.
T Consensus 157 E~rAE~aER----sVak---Leke~DdlE~kl~~~k~ky~~~~~eLD~~~~~L~~ 204 (205)
T KOG1003|consen 157 ETRAEFAER----RVAK---LEKERDDLEEKLEEAKEKYEEAKKELDETLQELEN 204 (205)
T ss_pred hhhHHHHHH----HHHH---HcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777654211 1122 23333344333344445555666677777776654
No 190
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=79.48 E-value=1.3e+02 Score=35.04 Aligned_cols=84 Identities=26% Similarity=0.276 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhch--HHHHhhHHHHHhhhhhHHHh------HHHHHh----hhhhHhhHHHH
Q 003941 434 NNEYQRAQILHLENVLKQTLAKQEEFKMMNH--SEIQKSKEIIDGLNNKLANC------MRTIEA----KNVELLNLQTA 501 (784)
Q Consensus 434 enE~~R~~Is~lEraLK~~~a~qeelk~~n~--~E~~~ske~iedL~~~L~~~------mealeA----KnvEl~NLQtA 501 (784)
.+|++|...-+||-.|.++ ||-+ .|. -.|++++.+..-|..||-.- ++.|.- ---+-.|+-.-
T Consensus 180 ~leQLRre~V~lentlEQE---qEal--vN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~h 254 (552)
T KOG2129|consen 180 TLEQLRREAVQLENTLEQE---QEAL--VNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLH 254 (552)
T ss_pred hHHHHHHHHHHHhhHHHHH---HHHH--HHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHH
Confidence 3588888888888887765 2222 222 35677777777777777431 332220 01133455544
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Q 003941 502 LGQYFAEIEAKGHLERELALAREE 525 (784)
Q Consensus 502 LgqfqAE~EA~ErLe~ELa~aree 525 (784)
..-.++|+ +||...+++|+..
T Consensus 255 i~~l~~Ev---eRlrt~l~~Aqk~ 275 (552)
T KOG2129|consen 255 IDKLQAEV---ERLRTYLSRAQKS 275 (552)
T ss_pred HHHHHHHH---HHHHHHHHHHHHH
Confidence 44556666 4566666665544
No 191
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=79.22 E-value=59 Score=34.33 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhH
Q 003941 496 LNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDN 575 (784)
Q Consensus 496 ~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn 575 (784)
.|....|.+|+.|.+. +..|=..+.+.|....+.|.. .|.++. +++......+..++++.++.
T Consensus 28 e~ee~~L~e~~kE~~~----------L~~Er~~h~eeLrqI~~DIn~----lE~iIk---qa~~er~~~~~~i~r~~eey 90 (230)
T PF10146_consen 28 ENEEKCLEEYRKEMEE----------LLQERMAHVEELRQINQDINT----LENIIK---QAESERNKRQEKIQRLYEEY 90 (230)
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH----HHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 4566788899888865 444555556666666666644 112222 23444444445556666667
Q ss_pred HHHHHHHHHHHHH-Hhhcc
Q 003941 576 AKLRLAVEQSMTR-LNRMS 593 (784)
Q Consensus 576 ~kLR~ALeqsl~R-L~~ms 593 (784)
.+|+..++.-..- +.-..
T Consensus 91 ~~Lk~~in~~R~e~lgl~~ 109 (230)
T PF10146_consen 91 KPLKDEINELRKEYLGLEP 109 (230)
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 7776666655544 44433
No 192
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=78.21 E-value=96 Score=32.72 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=20.1
Q ss_pred HHHHHhcCCCHHHHHHhhhcccCCCCCcccccccCC
Q 003941 623 DLMVRMLGFSDEDKQRIGMAQQGAGKGVVRGVLGLP 658 (784)
Q Consensus 623 ~LMArMLgFSDEEK~riGL~~q~~g~G~~rgv~g~p 658 (784)
.++.++=.+.+++|..++-+..++...++++.+.+|
T Consensus 152 ~~i~~l~~l~~~~r~~l~~~~~~~~~~~i~ta~~l~ 187 (250)
T PRK14474 152 IFIARLEHLSEAERQALANSNTTPEMLRIRTSFELS 187 (250)
T ss_pred HHHHHhcccCHHHHHHHHhhhcCCCCeEEEeCCCCC
Confidence 344566678888888877552223334444444444
No 193
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.92 E-value=1.6e+02 Score=35.26 Aligned_cols=226 Identities=15% Similarity=0.123 Sum_probs=128.5
Q ss_pred HHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhH
Q 003941 254 EQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEK 333 (784)
Q Consensus 254 e~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~ 333 (784)
|-+.=-+..+++...-..-+.-+|.+..+..||-....-++-|++-++-.--. +++.-.+-..+.++.+|..-|..+.
T Consensus 175 Ec~ris~~~eQ~~l~segNq~gsm~argl~~ELR~qr~rnq~Le~~ssS~~g~--~~~~~~~~ae~~~~~~e~~llr~t~ 252 (654)
T KOG4809|consen 175 ECKRISFCSEQNALHSEGNQPGSMNARGLSAELRNQRARNQPLEINSSSAKGL--GYTCLGRLAELLTTKEEQFLLRSTD 252 (654)
T ss_pred HHHHHHHHHHHHHhhccCCchhhHHHHHHHHHHHHHHhhcchhhhhhhcccCC--CchHHHHHHHhhhHHHHHHHHHhcC
Confidence 55555566677776666666789999999999977777788788777653211 2333335566667777766666666
Q ss_pred HHHHHHHHHhhhcCCCccCCCCC------CCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 003941 334 TELVAALEKNRKSSNEKIFPDAS------EYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLK 407 (784)
Q Consensus 334 ~eL~a~L~~~r~t~~~k~~~da~------e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLR 407 (784)
-+++-.+++-.-|+.-+ |++ .++++--+...-+.-|.+. +-+-.+.--. +-+.+.=+.||+
T Consensus 253 ~~~e~riEtqkqtl~ar---desIkkLlEmLq~kgmg~~~~~~df~~~-------~~~a~~~~h~---r~~~er~IerLk 319 (654)
T KOG4809|consen 253 PSGEQRIETQKQTLDAR---DESIKKLLEMLQRKGMGRSNQPRDFTKA-------NLSAHEMAHM---RMKVERIIERLK 319 (654)
T ss_pred chHHHHHHHHHhhhhhH---HHHHHHHHHHHHHhhcccccchhhHHHH-------HHhHHHHHhh---hchHHHHHHHhc
Confidence 66666666554443222 100 0000000000101112111 1100011111 111122233443
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHH
Q 003941 408 QHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRT 487 (784)
Q Consensus 408 qHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mea 487 (784)
..=.-. |-| |- ..|+-.+-++...+.+|..+.++|+.+++.+.+++ ++..-+..-+..+-.+|-.-.=+
T Consensus 320 eqr~rd---erE-~~---EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlk----ehassLas~glk~ds~Lk~leIa 388 (654)
T KOG4809|consen 320 EQRERD---ERE-RL---EEIESFRKENKDLKEKVNALQAELTEKESSLIDLK----EHASSLASAGLKRDSKLKSLEIA 388 (654)
T ss_pred chhhhh---HHH-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhhhhhhhHHHHH
Confidence 321111 111 11 23677777899999999999999999999887764 33444566677777777776668
Q ss_pred HHhhhhhHhhHHHHHHHH
Q 003941 488 IEAKNVELLNLQTALGQY 505 (784)
Q Consensus 488 leAKnvEl~NLQtALgqf 505 (784)
|++++.+|.-+..-|-+-
T Consensus 389 lEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 389 LEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998888877654
No 194
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=77.88 E-value=1.6e+02 Score=35.26 Aligned_cols=14 Identities=29% Similarity=0.301 Sum_probs=9.0
Q ss_pred chHHHHHHHHhcCC
Q 003941 618 SKEVLDLMVRMLGF 631 (784)
Q Consensus 618 sKEVL~LMArMLgF 631 (784)
..+++..+-+++|-
T Consensus 533 ~~~~~~~l~~~~~~ 546 (607)
T KOG0240|consen 533 ITELLSELRKDLGE 546 (607)
T ss_pred HHHHHHHHHhhhcc
Confidence 34777777777653
No 195
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.79 E-value=1e+02 Score=36.94 Aligned_cols=91 Identities=22% Similarity=0.257 Sum_probs=50.7
Q ss_pred hHHHhHHHHHhh-hhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHH
Q 003941 480 KLANCMRTIEAK-NVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSE 558 (784)
Q Consensus 480 ~L~~~mealeAK-nvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E 558 (784)
.|.+||.++... +.++-||-.|=-.|-. |+..+-.++.+|...+..+.-+.. | .-.|.+
T Consensus 634 ~L~~~~~~L~~~~~~~lp~l~~AErdFk~----------Elq~~~~~~~~L~~~iET~~~~~~-----K-----Q~~H~~ 693 (741)
T KOG4460|consen 634 DLMNRMKKLLHSFHSELPVLSDAERDFKK----------ELQLIPDQLRHLGNAIETVTMKKD-----K-----QQQHME 693 (741)
T ss_pred HHHHHHHHHHhcccccCCcchhHHHHHHH----------HHHHhHHHHHHHHHHHHHHHHHHH-----H-----HHHHHH
Confidence 456677766554 7788888766555544 444555556665554433332211 1 224556
Q ss_pred HHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhcc
Q 003941 559 KMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMS 593 (784)
Q Consensus 559 ~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms 593 (784)
..+.+.+.-..-+. ++=++.+...|..|.-|.
T Consensus 694 ~v~~al~K~~Y~l~---~~Q~~~iqsiL~~L~~~i 725 (741)
T KOG4460|consen 694 KVLSALPKPTYILS---AYQRKCIQSILKELGEHI 725 (741)
T ss_pred HHHhhccCCccccc---HHHHHHHHHHHHHHHHHH
Confidence 66666554322222 556667777777776655
No 196
>COG5293 Predicted ATPase [General function prediction only]
Probab=77.78 E-value=55 Score=38.32 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhh
Q 003941 434 NNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKG 513 (784)
Q Consensus 434 enE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~E 513 (784)
.-+|....|..++++||.- +..+.+|.+++++.++-+.. ..|++.|+-=.|-..
T Consensus 336 R~~yl~~ei~~i~~dLk~~------------------n~~~~~l~~~rae~l~~Lk~--------~g~~e~y~~l~ee~~ 389 (591)
T COG5293 336 RHDYLQEEIAEIEGDLKEV------------------NAELDDLGKRRAEGLAFLKN--------RGVFEKYQTLCEEII 389 (591)
T ss_pred HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHh--------CCcHHHHHHHHHHHH
Confidence 4678899999999998854 45678899999999988887 347888887777666
Q ss_pred hhHHHHHHHHHHHH
Q 003941 514 HLERELALAREESA 527 (784)
Q Consensus 514 rLe~ELa~aree~a 527 (784)
+++.|||-++--+.
T Consensus 390 ~~~~elae~~~rie 403 (591)
T COG5293 390 ALRGELAELEYRIE 403 (591)
T ss_pred HHhhhHHHHHHhhh
Confidence 77777776655443
No 197
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.66 E-value=1.6e+02 Score=35.16 Aligned_cols=167 Identities=23% Similarity=0.237 Sum_probs=94.2
Q ss_pred chHHHHHHhhcc--cCccchh-hHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHH
Q 003941 258 NESFQDELKSLK--MDKDKTS-IEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKT 334 (784)
Q Consensus 258 n~~fqe~l~~lk--~~~~kts-~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~ 334 (784)
++.+|.+-..|| ++.-++| -++++|..|.++-.-++-+++-++.+... .+-.++..++.--++..++-..++
T Consensus 310 ~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k-----~vw~~~l~~~~~f~~le~~~~~~~ 384 (581)
T KOG0995|consen 310 IEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSK-----EVWELKLEIEDFFKELEKKFIDLN 384 (581)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555553 3333333 46778888877777777777777766433 344455555555555555555666
Q ss_pred HHHHHHHHh--hhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003941 335 ELVAALEKN--RKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIE 412 (784)
Q Consensus 335 eL~a~L~~~--r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe 412 (784)
.|--+|... -...+-.+.|. .-...-|-.+.-+.-.+..|-+++++. ...+..++..|-.|.=.
T Consensus 385 ~l~~~i~l~~~~~~~n~~~~pe-----------~~~~~~~d~k~~V~~~l~el~~ei~~~---~~~~~~~~~tLq~~~~~ 450 (581)
T KOG0995|consen 385 SLIRRIKLGIAENSKNLERNPE-----------RAATNGVDLKSYVKPLLKELLDEISEE---LHEAENELETLQEHFSN 450 (581)
T ss_pred HHHHHHHHHHHHHhccCCcCCc-----------cCccccccchhHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 665555543 11111122221 111222335566655566655555554 66677777788777655
Q ss_pred HhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003941 413 KAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLA 454 (784)
Q Consensus 413 ~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a 454 (784)
+. -.|+|+++.+.+...++..++..+...+.
T Consensus 451 ~~-----------~~i~E~~~~l~~~~~el~~~~~~~~~~k~ 481 (581)
T KOG0995|consen 451 KA-----------STIEEKIQILGEIELELKKAESKYELKKE 481 (581)
T ss_pred HH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 25788888887777776666665554433
No 198
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=77.63 E-value=70 Score=37.25 Aligned_cols=38 Identities=21% Similarity=0.306 Sum_probs=19.3
Q ss_pred HHHHhhhHHHHhhhhHHHHHHh--------hhHHHHHHHhhhhhhh
Q 003941 532 YLKNADQRAEVSRSEKEEILVK--------LSHSEKMLAEGKGRAN 569 (784)
Q Consensus 532 ~Lk~a~q~ie~~~kEKeei~~K--------Ls~~E~~l~e~K~~~~ 569 (784)
.|++|+..+|..+|....+.+. +.++...+-++|..+.
T Consensus 362 ql~~Ake~~eklkKKrssv~gtl~vahgsslDdVD~kIleak~al~ 407 (575)
T KOG4403|consen 362 QLKEAKEMAEKLKKKRSSVFGTLHVAHGSSLDDVDHKILEAKSALS 407 (575)
T ss_pred HHHHHHHHHHHHHHhhcchheeeeeccccchhhHHHHHHHHHHHHH
Confidence 4666666666655554444432 2344444555554433
No 199
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=76.86 E-value=1.6e+02 Score=34.56 Aligned_cols=73 Identities=22% Similarity=0.295 Sum_probs=31.9
Q ss_pred HHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003941 467 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAE 541 (784)
Q Consensus 467 ~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie 541 (784)
++.+....+||.+.|...-+.-+-.-||-.||-.-|.+-..=.|-.+-++-+..+ .++..|--.|+.|+...+
T Consensus 254 Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--kelE~lR~~L~kAEkele 326 (575)
T KOG4403|consen 254 LQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--KELEQLRVALEKAEKELE 326 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 4444555556655555443322333345566666666333333333322222222 344444444444444443
No 200
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=76.45 E-value=26 Score=42.15 Aligned_cols=46 Identities=17% Similarity=0.452 Sum_probs=38.7
Q ss_pred chHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhccc
Q 003941 258 NESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRR 303 (784)
Q Consensus 258 n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~ 303 (784)
+..+||-|.-|.|||+-.-..++-|-....+.-..||.|.-=|...
T Consensus 106 ~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~k 151 (861)
T KOG1899|consen 106 YPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEK 151 (861)
T ss_pred chHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5678999999999999999999988888888888888887666553
No 201
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=76.44 E-value=96 Score=32.69 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003941 376 EEMEQSLQKLEKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 376 Eeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqH 409 (784)
|.+|...+.|..-|.....+..++..+|.+--..
T Consensus 1 E~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~ 34 (246)
T PF00769_consen 1 EEAEREKQELEERLRQMEEEMRRAQEALEESEET 34 (246)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666666766677777666554433
No 202
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=76.15 E-value=1.1e+02 Score=32.22 Aligned_cols=186 Identities=24% Similarity=0.302 Sum_probs=96.1
Q ss_pred HHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCccc
Q 003941 283 RKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRL 362 (784)
Q Consensus 283 ~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~ 362 (784)
-.||+.|+..++..|.-. ..|-..+..+..--..+....++|=.-+...-.. ++
T Consensus 32 D~eL~~kle~l~~~~~~y------------~~L~~~~~~~~~~l~~l~q~q~~lg~~f~~~~~~--e~------------ 85 (229)
T PF06456_consen 32 DDELDAKLELLRDTQRTY------------RGLLKHARAYQNRLQALSQTQKELGDFFAELGVR--EK------------ 85 (229)
T ss_dssp HHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H------------
T ss_pred chHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CC------------
Confidence 468999999998887654 3455555555555556666666666666555221 11
Q ss_pred CCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH-hHHHH--H
Q 003941 363 DGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRE-NNEYQ--R 439 (784)
Q Consensus 363 ~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELre-enE~~--R 439 (784)
+++-.+.|...-+....+..=...|... ......+|.-++.+.|.--- .+|..... ..||- +
T Consensus 86 --~~~l~~~f~~~~~~~~~~~~~~~~L~~~---l~~~~~~l~Tf~~kaI~DT~----------~Tik~ye~aR~EY~ay~ 150 (229)
T PF06456_consen 86 --SPALGEEFSANGEAQRSLAKQGETLLKA---LKRFLSDLNTFRNKAIPDTL----------LTIKKYEDARFEYDAYR 150 (229)
T ss_dssp ---CCGHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 1111122333333333333322233333 55555666666665543211 11111111 12221 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhh-----hHhhHHHHHHHHHHHH
Q 003941 440 AQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNV-----ELLNLQTALGQYFAEI 509 (784)
Q Consensus 440 ~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnv-----El~NLQtALgqfqAE~ 509 (784)
..+.++...+.-..+.++..=-....-.+.+++.-+.|+.++.-+|+-|+++.+ .|..+|+||..|+..-
T Consensus 151 ~~lke~~~e~~~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv~~Kl~LL~~~rv~~~~~qL~~~~~al~~y~~~~ 225 (229)
T PF06456_consen 151 LWLKEMSDELDPDTAKQEPKFRVAQGNYQEAKERFDKLRSDVLVKLDLLDENRVNVMSHQLVLFQNALAAYFSGN 225 (229)
T ss_dssp HHHHHHH--TSTSSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCchhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 111111111100001111100001134577899999999999999999999976 8999999999999754
No 203
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=76.04 E-value=48 Score=33.64 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=33.1
Q ss_pred cchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 308 ANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 308 ~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
++.....++..+..|+++...++..+.+|...|...+..
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~ 98 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKG 98 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355677889999999999999999999999999988544
No 204
>PRK12705 hypothetical protein; Provisional
Probab=75.82 E-value=1.7e+02 Score=34.37 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHhh
Q 003941 577 KLRLAVEQSMTRLNR 591 (784)
Q Consensus 577 kLR~ALeqsl~RL~~ 591 (784)
+.|.-+..||+|+..
T Consensus 177 ~A~~ii~~aiqr~a~ 191 (508)
T PRK12705 177 KAQNILAQAMQRIAS 191 (508)
T ss_pred HHHHHHHHHHHHhcc
Confidence 456778888888754
No 205
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=75.45 E-value=2.2e+02 Score=35.60 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 003941 381 SLQKLEKDLKETCSERDKALQELTRLK 407 (784)
Q Consensus 381 sl~~L~~eL~e~~~E~dKa~kEL~RLR 407 (784)
.+..+..++.+.....+.+..++..+.
T Consensus 531 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1047)
T PRK10246 531 RLDALEKEVKKLGEEGAALRGQLDALT 557 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555554444444444333333
No 206
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=75.38 E-value=1.4e+02 Score=33.31 Aligned_cols=72 Identities=26% Similarity=0.253 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003941 379 EQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLK 450 (784)
Q Consensus 379 e~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK 450 (784)
++.+..+...+...+..+..+.+-|..+++++-.....+.....-.+.+|..||+.....+.+|..+-..++
T Consensus 238 ~~~~~~ln~ql~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~s~~i~~Lr~~~~~~~~~~~~l~~~~~ 309 (458)
T COG3206 238 EQQLSALNTQLQSARARLAQAEARLASLLQLLPLGREAAALREVLESPTIQDLRQQYAQVRQQIADLSTELG 309 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHhccHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455677778888888899999999999999877666545555666667888888876666666666555544
No 207
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=75.07 E-value=22 Score=34.58 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
+-+..+...|..|+++...|+.+.+.|.+.|..++++
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~ 108 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSE 108 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4678888889999999999999999999999999666
No 208
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=74.90 E-value=87 Score=30.61 Aligned_cols=60 Identities=22% Similarity=0.297 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 382 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 452 (784)
Q Consensus 382 l~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~ 452 (784)
|+.|+.+...+..-.+.+...+..|-+.+..++. .|..|...+.....+|..++..|...
T Consensus 2 m~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~-----------EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 2 MQALKLEADNAQDRAEELEAKVKQLEQENEQKEQ-----------EITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred hHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555666666555555531 23444444444444455544444443
No 209
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=74.82 E-value=1.9e+02 Score=34.48 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=28.0
Q ss_pred hhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHH
Q 003941 256 RLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSE 292 (784)
Q Consensus 256 k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~se 292 (784)
|.|+.+|+.-.+|-=.-++.-..+..+.-||+-|.--
T Consensus 90 k~nk~Lq~~nesLeEqv~~~~d~vvql~hels~k~el 126 (596)
T KOG4360|consen 90 KANKALQEDNESLEEQVDAPWDRVVQLGHELSRKDEL 126 (596)
T ss_pred hhhhhhhhhhhhhHhhhcchHHHHHHhhhhhhhhhhh
Confidence 4566666666666666678889999999999988643
No 210
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=74.78 E-value=58 Score=36.33 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=62.2
Q ss_pred HHHHhhhhhHHHhHHHHHhhhhhHhh-HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHH
Q 003941 472 EIIDGLNNKLANCMRTIEAKNVELLN-LQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEI 550 (784)
Q Consensus 472 e~iedL~~~L~~~mealeAKnvEl~N-LQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei 550 (784)
.....|-+..+-.++.|+++..-|+| |-+-+.+|.+-..---.+.....++...+.+-++.|.+.-..+|..+.|-|+-
T Consensus 248 ~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~ 327 (384)
T KOG0972|consen 248 PYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQ 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555566777776555544 33345556544322222233333444456777778888777778777776554
Q ss_pred HHhhhHHHHHHHhhhhhhhhhHHhHHHHHH
Q 003941 551 LVKLSHSEKMLAEGKGRANKLEEDNAKLRL 580 (784)
Q Consensus 551 ~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ 580 (784)
=.+.+.=. -+..+|..+.||++|...+.-
T Consensus 328 G~~msDGa-plvkIkqavsKLk~et~~mnv 356 (384)
T KOG0972|consen 328 GAKMSDGA-PLVKIKQAVSKLKEETQTMNV 356 (384)
T ss_pred cccccCCc-hHHHHHHHHHHHHHHHHhhhh
Confidence 44443221 244566778888888888764
No 211
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=74.45 E-value=60 Score=32.21 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=13.4
Q ss_pred hHHHHhhHHHHHhhhhhHHHhH
Q 003941 464 HSEIQKSKEIIDGLNNKLANCM 485 (784)
Q Consensus 464 ~~E~~~ske~iedL~~~L~~~m 485 (784)
+.++..++.+|+.+|.++.-|+
T Consensus 137 ~~ei~~lr~~iE~~K~~~lr~~ 158 (177)
T PF07798_consen 137 DTEIANLRTEIESLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666665553
No 212
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=74.36 E-value=2.6e+02 Score=35.75 Aligned_cols=63 Identities=21% Similarity=0.321 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhH
Q 003941 228 SQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKL 290 (784)
Q Consensus 228 ~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~ 290 (784)
.+|++|..+|+.-+..+..++-.+.-+...+..+++++..|+-.-..+..++.-+..|+.+-.
T Consensus 448 ~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~ 510 (1041)
T KOG0243|consen 448 EQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKELESLKEELQQAK 510 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888888888888888877777777766666655554433
No 213
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=74.31 E-value=1.2e+02 Score=31.85 Aligned_cols=139 Identities=19% Similarity=0.215 Sum_probs=70.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 003941 389 LKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQ 468 (784)
Q Consensus 389 L~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~ 468 (784)
+.++..-.-|+.-|-..|+..+..++ +...+.-+ ++...+.++-.+..++-.+.+
T Consensus 10 v~dL~~~n~~L~~en~kL~~~ve~~e-e~na~L~~----------e~~~L~~q~~s~Qqal~~aK~-------------- 64 (193)
T PF14662_consen 10 VEDLQLNNQKLADENAKLQRSVETAE-EGNAQLAE----------EITDLRKQLKSLQQALQKAKA-------------- 64 (193)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH--------------
Confidence 44444446667777777777755444 23333333 233344445555555555533
Q ss_pred hhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHH
Q 003941 469 KSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKE 548 (784)
Q Consensus 469 ~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKe 548 (784)
++++++|||.-+. .++. .|=+-.=..++.|.|. -+|..++..+++++.+|.....--+.++..+..++.
T Consensus 65 -l~eEledLk~~~~----~lEE-----~~~~L~aq~rqlEkE~-q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~ 133 (193)
T PF14662_consen 65 -LEEELEDLKTLAK----SLEE-----ENRSLLAQARQLEKEQ-QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKA 133 (193)
T ss_pred -HHHHHHHHHHHHH----HHHH-----HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhH
Confidence 2344444432211 1122 2222222345555554 377788888888877777666666666555544554
Q ss_pred HHHHhhhHHHHHHHh
Q 003941 549 EILVKLSHSEKMLAE 563 (784)
Q Consensus 549 ei~~KLs~~E~~l~e 563 (784)
.+-.++-+++..+..
T Consensus 134 ~Lq~Ql~~~e~l~~~ 148 (193)
T PF14662_consen 134 TLQRQLCEFESLICQ 148 (193)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 214
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=74.11 E-value=1.1e+02 Score=31.39 Aligned_cols=48 Identities=15% Similarity=0.214 Sum_probs=25.3
Q ss_pred HHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHH
Q 003941 557 SEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRI 604 (784)
Q Consensus 557 ~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRI 604 (784)
.+.....+..++.+++.+-..|...++.++..+...+.-..-.+-|+|
T Consensus 105 Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl 152 (201)
T PF13851_consen 105 LKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKL 152 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444456666666666666666666665554444444444443
No 215
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=73.34 E-value=98 Score=30.45 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=15.6
Q ss_pred HhhhhhhhhhHHhHHHHHHHHHHHHHHH
Q 003941 562 AEGKGRANKLEEDNAKLRLAVEQSMTRL 589 (784)
Q Consensus 562 ~e~K~~~~KL~eDn~kLR~ALeqsl~RL 589 (784)
...+..+..++..+..|++.++.+-.++
T Consensus 148 ~~~~~~~~~l~~~i~~l~rk~~~l~~~i 175 (177)
T PF13870_consen 148 DKTKEEVEELRKEIKELERKVEILEMRI 175 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334455556666666666665555444
No 216
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=73.15 E-value=26 Score=36.97 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHH
Q 003941 526 SAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVE 583 (784)
Q Consensus 526 ~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALe 583 (784)
++++.+.++..+..++...++.+....+.-...+...+...++..|-+|+++|+..++
T Consensus 153 ~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 153 NDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence 3333333333333334333333333444444555566666778999999999998774
No 217
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=72.97 E-value=66 Score=32.68 Aligned_cols=38 Identities=24% Similarity=0.414 Sum_probs=28.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003941 371 SFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 371 sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~ 413 (784)
+||..+- ..++..+..+..+.++...++..|+..+-+.
T Consensus 58 sFps~~~-----~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 58 SFPSQAK-----QKRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred ecChHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888754 5677778888888888888888888885444
No 218
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.90 E-value=2.3e+02 Score=34.52 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=63.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCC
Q 003941 279 ITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEY 358 (784)
Q Consensus 279 ~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~ 358 (784)
..+|-.++.|-..++-.+-++|-. ...+-.++.++........|...+...++.|..+...+++......
T Consensus 23 L~~IW~~igE~~~e~d~~l~~le~-------e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~--- 92 (660)
T KOG4302|consen 23 LQKIWDEIGESETERDKKLLRLEQ-------ECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE--- 92 (660)
T ss_pred HHHHHHHhCccHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc---
Confidence 556666666665555544444432 2445566777888888888888888888888888888777755442
Q ss_pred CcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 003941 359 PSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLK 407 (784)
Q Consensus 359 ~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLR 407 (784)
..++... .|...+..|...|...+...+...+|+.-|.
T Consensus 93 ------~~~k~e~-----tLke~l~~l~~~le~lr~qk~eR~~ef~el~ 130 (660)
T KOG4302|consen 93 ------ISDKIEG-----TLKEQLESLKPYLEGLRKQKDERRAEFKELY 130 (660)
T ss_pred ------cccccCc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111100 2333345555555555555555555544443
No 219
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=72.56 E-value=96 Score=34.34 Aligned_cols=89 Identities=28% Similarity=0.424 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 003941 381 SLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFK 460 (784)
Q Consensus 381 sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk 460 (784)
.+--|+.-|+|+....---..|+..||..|--|.+ || ||| ||-+.++|+ |||.++-
T Consensus 69 ~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrE------DW----IEE---ECHRVEAQL-----ALKEARk------ 124 (305)
T PF15290_consen 69 CIRHLKAKLKESENRLHDRETEIDELKSQLARMRE------DW----IEE---ECHRVEAQL-----ALKEARK------ 124 (305)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH------HH----HHH---HHHHHHHHH-----HHHHHHH------
Confidence 45678888999887777778899999999888763 34 555 676667655 5666532
Q ss_pred hhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHh
Q 003941 461 MMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAK 512 (784)
Q Consensus 461 ~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ 512 (784)
||+.+|.-||-.+..|+.+. .-+..||-++-++
T Consensus 125 -----EIkQLkQvieTmrssL~ekD--------------kGiQKYFvDINiQ 157 (305)
T PF15290_consen 125 -----EIKQLKQVIETMRSSLAEKD--------------KGIQKYFVDINIQ 157 (305)
T ss_pred -----HHHHHHHHHHHHHhhhchhh--------------hhHHHHHhhhhhh
Confidence 46666776666666665553 3456799999653
No 220
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=72.25 E-value=1.2e+02 Score=30.94 Aligned_cols=11 Identities=0% Similarity=0.268 Sum_probs=5.3
Q ss_pred HHHHHHHhcCC
Q 003941 621 VLDLMVRMLGF 631 (784)
Q Consensus 621 VL~LMArMLgF 631 (784)
++..++.|+..
T Consensus 149 l~~~l~~ifpI 159 (302)
T PF10186_consen 149 LIQELSEIFPI 159 (302)
T ss_pred HHHHHHHHhCc
Confidence 44444455544
No 221
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=72.07 E-value=2.6e+02 Score=34.83 Aligned_cols=236 Identities=22% Similarity=0.233 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHh--hHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHH
Q 003941 311 VVENLKRVVATLEKENNSLKM--EKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKD 388 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~--~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~e 388 (784)
++.-|=.+|.+|=.+-...++ =+.|+++-+.-+-...|+. +. +.|..|+
T Consensus 338 t~KYLLgELkaLVaeq~DsE~qRLitEvE~cislLPav~g~t--------------ni----------q~EIALA----- 388 (861)
T PF15254_consen 338 TLKYLLGELKALVAEQEDSEVQRLITEVEACISLLPAVSGST--------------NI----------QVEIALA----- 388 (861)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhhccc--------------cc----------hhhhHhh-----
Confidence 444444555555444433333 3567777666664443333 11 2233333
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhh-hhh-hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH
Q 003941 389 LKETCSERDKALQELTRLKQHLIEKAQEE-SEK-MDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSE 466 (784)
Q Consensus 389 L~e~~~E~dKa~kEL~RLRqHLLe~E~Ee-~ek-mded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E 466 (784)
|.-++.|..-+..-|.-|-|.|-+.|.-+ ... .|- +.++-=|+--|-.+..| |+...-.++-+...|+.
T Consensus 389 ~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~-n~El~sLqSlN~~Lq~q-------l~es~k~~e~lq~knee- 459 (861)
T PF15254_consen 389 MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDC-NLELFSLQSLNMSLQNQ-------LQESLKSQELLQSKNEE- 459 (861)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCccc-chhhHHHHHHHHHHHHH-------HHHHHHhHHHHHHhHHH-
Confidence 55566666666677777778877765321 111 111 12222233334333333 33333333433333322
Q ss_pred HHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhh
Q 003941 467 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSE 546 (784)
Q Consensus 467 ~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kE 546 (784)
+.+..+--.+=+++ +...+.-||.+|.+.- .+|..|. .+++-|+...-...+..+-..+++.+|
T Consensus 460 llk~~e~q~~Enk~---~~~~~~ekd~~l~~~k---q~~d~e~----------~rik~ev~eal~~~k~~q~kLe~sekE 523 (861)
T PF15254_consen 460 LLKVIENQKEENKR---LRKMFQEKDQELLENK---QQFDIET----------TRIKIEVEEALVNVKSLQFKLEASEKE 523 (861)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHhhH---HHHHHHH----------HHHHHHHHHHHHHHHHHhhhHHHHHhh
Confidence 22222222222233 3334566666665432 2333332 334434333222344444555555555
Q ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHH-hhccCCcchhhhHHHHHHHHHH
Q 003941 547 KEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRL-NRMSVDSDFLVDRRIVIKLLVT 611 (784)
Q Consensus 547 Keei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL-~~ms~dsD~~VDRRIVtkLLLT 611 (784)
...+---|.|-. .++.+|+ -|-|.|..+|.+| .+.++|..-.=--.-+||-||.
T Consensus 524 N~iL~itlrQrD-------aEi~RL~----eLtR~LQ~Sma~lL~dls~D~ar~Kp~~nLTKSLLn 578 (861)
T PF15254_consen 524 NQILGITLRQRD-------AEIERLR----ELTRTLQNSMAKLLSDLSVDSARCKPGNNLTKSLLN 578 (861)
T ss_pred hhHhhhHHHHHH-------HHHHHHH----HHHHHHHHHHHHHhhhccccccccCCcchhHHHHHH
Confidence 432222222221 2233333 3678899999998 6677776532223344444443
No 222
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=72.06 E-value=40 Score=40.30 Aligned_cols=52 Identities=21% Similarity=0.314 Sum_probs=36.6
Q ss_pred hhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q 003941 493 VELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSR 544 (784)
Q Consensus 493 vEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~ 544 (784)
.++.+|-+=|.+|..+.+-+.+..+|+++....+..|...|.+.+..++.++
T Consensus 450 ~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~ 501 (652)
T COG2433 450 REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELE 501 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777777777666666655443
No 223
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=71.68 E-value=9.9 Score=35.54 Aligned_cols=80 Identities=23% Similarity=0.242 Sum_probs=64.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHH
Q 003941 504 QYFAEIEAKGHLERELALAREESAKLSEYL-KNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAV 582 (784)
Q Consensus 504 qfqAE~EA~ErLe~ELa~aree~a~Ls~~L-k~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~AL 582 (784)
.+..+.+..+.++.+...+..++..|++.| -+|+.-+...++|...+-.|..+.+..+.+....+..+......|+..+
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~lq~qL~~LK~v~ 81 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLESLQAQLKELKTVM 81 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCHCTSSSSHHHHCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667778888889999999999888 8888888888888888888888999999998888887777777776654
Q ss_pred H
Q 003941 583 E 583 (784)
Q Consensus 583 e 583 (784)
.
T Consensus 82 ~ 82 (100)
T PF06428_consen 82 E 82 (100)
T ss_dssp T
T ss_pred H
Confidence 3
No 224
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=71.42 E-value=1.7e+02 Score=32.41 Aligned_cols=53 Identities=26% Similarity=0.321 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhh
Q 003941 278 EITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 278 ~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~ 345 (784)
.|-..-+|+-.|...++..-.++.-.. ..|.++-+.|..++++|+++...|+.
T Consensus 3 ~~~~~~~E~e~K~~~lk~~~~e~~ekR---------------~El~~~~~~~~ekRdeln~kvrE~~e 55 (294)
T COG1340 3 AMLDKLDELELKRKQLKEEIEELKEKR---------------DELRKEASELAEKRDELNAKVRELRE 55 (294)
T ss_pred hHHHhhhHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777776666655555433 44555555666666666666666643
No 225
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=71.15 E-value=85 Score=34.49 Aligned_cols=191 Identities=20% Similarity=0.254 Sum_probs=100.1
Q ss_pred HHhhHHhhhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHH
Q 003941 207 ELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKEL 286 (784)
Q Consensus 207 e~~d~le~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el 286 (784)
+|++ ||+|-+----.-|++.|+--.|--+.+--.+++.+++-.|-+=++-++--.-+|.-+|-..+.+.-++..++.+|
T Consensus 85 ~l~e-vEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 85 SLAE-VEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HHHH-HHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555 355555444456777776655555555555555555444333333222334467777777777777777777777
Q ss_pred hhhHHHHHHHHHHhcc-cccCCcch----------------HHHHHHHH--------HHHHHHhhhhhHhhHHHHHHHHH
Q 003941 287 NGKLSELRRLQMELNR-REDGDAND----------------VVENLKRV--------VATLEKENNSLKMEKTELVAALE 341 (784)
Q Consensus 287 ~ek~sei~rlq~~l~~-~e~e~~~~----------------~~~sLk~~--------~~~L~kEn~tlk~~~~eL~a~L~ 341 (784)
.+.-.-|..-=+-|.. -.+.+.++ ...-|... +..|-.|+..|-.++..|...|+
T Consensus 164 ~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~~qv~klk~qLe 243 (302)
T PF09738_consen 164 KQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELLEQVRKLKLQLE 243 (302)
T ss_pred HHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6555544433233333 22222222 12233333 77777899999999999999997
Q ss_pred HhhhcCCCccC-CCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003941 342 KNRKSSNEKIF-PDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTR 405 (784)
Q Consensus 342 ~~r~t~~~k~~-~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~R 405 (784)
.-++.-..... .+...+. ...+.+- +.++-.+|..-..+...++|= -.-|+.||++.
T Consensus 244 e~~~~~~~~~~~~~~~~l~--~~~~~En--~d~~~~d~qrdanrqisd~Kf---Kl~KaEQeit~ 301 (302)
T PF09738_consen 244 ERQSEGRRQKSSSENGVLG--DDEDLEN--TDLHFIDLQRDANRQISDYKF---KLQKAEQEITT 301 (302)
T ss_pred HHHhccccccccCCCcccc--ccccccc--ccccHHHhhhHHHHHHHHHHH---HHHHHHHhhcc
Confidence 76555221110 0000000 0012221 334455665555554444443 36677777654
No 226
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=70.24 E-value=1e+02 Score=29.45 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=18.6
Q ss_pred hhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHH
Q 003941 545 SEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAV 582 (784)
Q Consensus 545 kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~AL 582 (784)
.+|+++..--..++..-.....++-|-+-++.+|+..|
T Consensus 112 ~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk~rL 149 (151)
T PF11559_consen 112 QEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLKERL 149 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444433223344444444455555566666666655
No 227
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=69.98 E-value=22 Score=34.58 Aligned_cols=71 Identities=21% Similarity=0.280 Sum_probs=40.6
Q ss_pred hhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 003941 460 KMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQ 538 (784)
Q Consensus 460 k~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q 538 (784)
......++..+..+|.+|..+|..--..+.....||.+|.+.+-- +-|...+..+.+++..+...|.....
T Consensus 67 ~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~--------~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 67 EVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTN--------EELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334456777777777777777766655556655666666665521 11234444455555555555555444
No 228
>PRK10698 phage shock protein PspA; Provisional
Probab=69.85 E-value=1.4e+02 Score=30.95 Aligned_cols=113 Identities=12% Similarity=0.237 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHH
Q 003941 438 QRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLER 517 (784)
Q Consensus 438 ~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ 517 (784)
++.++..+.+++...++.+..+ ...+......|.++..+.. -+|.+-+..|+ ..||.....-.+....|+.
T Consensus 36 m~~~l~~~r~alA~~~A~~k~~----er~~~~~~~~~~~~e~kA~---~Al~~G~EdLA--r~AL~~K~~~~~~~~~l~~ 106 (222)
T PRK10698 36 MEDTLVEVRSTSARALAEKKQL----TRRIEQAEAQQVEWQEKAE---LALRKEKEDLA--RAALIEKQKLTDLIATLEH 106 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH---HHHHCCCHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3455566666777776654432 3344444555555544432 34455455544 3456666555555667778
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHH
Q 003941 518 ELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEK 559 (784)
Q Consensus 518 ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~ 559 (784)
++......+.+|...|..-+..+...+..+..++++...++.
T Consensus 107 ~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 107 EVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888778888877777777777777667777666544433
No 229
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=69.62 E-value=1.2e+02 Score=30.07 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=15.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003941 429 EELRENNEYQRAQILHLENVLKQTLA 454 (784)
Q Consensus 429 eELreenE~~R~~Is~lEraLK~~~a 454 (784)
..++.+++..+.+|..++..|+..+.
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~~ei~ 101 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELREEIN 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666666666666665544
No 230
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=69.52 E-value=2.6e+02 Score=33.84 Aligned_cols=59 Identities=22% Similarity=0.292 Sum_probs=40.9
Q ss_pred HhhHHhhhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhc
Q 003941 208 LADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSL 268 (784)
Q Consensus 208 ~~d~le~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~l 268 (784)
|-..|++..+-++..|...+..-+.|..+-...+.-.. ..++.....+=++||.|...|
T Consensus 20 LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~p--e~k~k~~~~llK~yQ~EiD~L 78 (629)
T KOG0963|consen 20 LQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTP--EDKLKMVNPLLKSYQSEIDNL 78 (629)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCc--HHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888888888877777766654433333222 345667788889999998765
No 231
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=69.28 E-value=2.9e+02 Score=34.29 Aligned_cols=51 Identities=24% Similarity=0.194 Sum_probs=35.0
Q ss_pred hHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 003941 480 KLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLS 530 (784)
Q Consensus 480 ~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls 530 (784)
-+.+.|.|++-+|+=..-|-++=.+|-+-.-++++|..+...+|.++++|.
T Consensus 207 hlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 207 HLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344567777777776666666666666666667777777777777777765
No 232
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=68.72 E-value=1.6e+02 Score=31.03 Aligned_cols=89 Identities=25% Similarity=0.291 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhh----hh
Q 003941 440 AQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKG----HL 515 (784)
Q Consensus 440 ~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~E----rL 515 (784)
..|+=|..-||.+-+ ++- .-..||--++.++.+++ ..+..++..+..|+.++..=..|.|.-+ +.
T Consensus 10 GEIsLLKqQLke~q~---E~~-~K~~Eiv~Lr~ql~e~~-------~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~ 78 (202)
T PF06818_consen 10 GEISLLKQQLKESQA---EVN-QKDSEIVSLRAQLRELR-------AELRNKESQIQELQDSLRTKQLELEVCENELQRK 78 (202)
T ss_pred hhHHHHHHHHHHHHH---HHH-HHHhHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHH
Confidence 357777777776522 221 12355655555555554 3445556666777776666555555431 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhH
Q 003941 516 ERELALAREESAKLSEYLKNADQR 539 (784)
Q Consensus 516 e~ELa~aree~a~Ls~~Lk~a~q~ 539 (784)
..|....++++..|.+.+..-+..
T Consensus 79 ~~Ea~lLrekl~~le~El~~Lr~~ 102 (202)
T PF06818_consen 79 KNEAELLREKLGQLEAELAELREE 102 (202)
T ss_pred hCHHHHhhhhhhhhHHHHHHHHHH
Confidence 444455556666655544444443
No 233
>PRK14011 prefoldin subunit alpha; Provisional
Probab=68.65 E-value=1.1e+02 Score=30.28 Aligned_cols=33 Identities=30% Similarity=0.291 Sum_probs=22.5
Q ss_pred hhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 003941 492 NVELLNLQTALGQYFAEIEAKGHLERELALAREESA 527 (784)
Q Consensus 492 nvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a 527 (784)
|.||.+++.+|.+|+++.+. |...+..++.-..
T Consensus 2 ~~elq~~~~~l~~~~~qie~---L~~si~~L~~a~~ 34 (144)
T PRK14011 2 NEELQNQFMALEVYNQQVQK---LQEELSSIDMMKM 34 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 67888899999999998854 4554444444333
No 234
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=68.22 E-value=1.2e+02 Score=29.34 Aligned_cols=31 Identities=35% Similarity=0.366 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHH
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALE 341 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~ 341 (784)
.|+.|...|..++-|...|+.++..|.+.=.
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~ 47 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELARLEAERD 47 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777776666666554433
No 235
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=68.17 E-value=1.9e+02 Score=31.64 Aligned_cols=75 Identities=24% Similarity=0.326 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHH
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLK 390 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~ 390 (784)
+.+-|...--.|+++|..++.+...+...-+..|..+.+++. .++..+..-+.
T Consensus 72 ~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq---------------------------~~L~dIq~~~e 124 (309)
T PF09728_consen 72 AKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQ---------------------------ATLKDIQAQME 124 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHH
Confidence 445555555667788888888888887777777777544433 23344444444
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 003941 391 ETCSERDKALQELTRLKQHLIE 412 (784)
Q Consensus 391 e~~~E~dKa~kEL~RLRqHLLe 412 (784)
+....+.+...|=..|+..|=.
T Consensus 125 e~~~~~~k~~~eN~~L~eKlK~ 146 (309)
T PF09728_consen 125 EQSERNIKLREENEELREKLKS 146 (309)
T ss_pred hccchhHHHHHHHHHHHHHHHH
Confidence 5555555555665666655433
No 236
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=68.10 E-value=1.6e+02 Score=30.63 Aligned_cols=75 Identities=15% Similarity=0.196 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HhhhchHHHHhhHHHHHhhhhhHHHhHH-HHHhhhhhHhhHHHHHHHHHHHH
Q 003941 435 NEYQRAQILHLENVLKQTLAKQEE----FKMMNHSEIQKSKEIIDGLNNKLANCMR-TIEAKNVELLNLQTALGQYFAEI 509 (784)
Q Consensus 435 nE~~R~~Is~lEraLK~~~a~qee----lk~~n~~E~~~ske~iedL~~~L~~~me-aleAKnvEl~NLQtALgqfqAE~ 509 (784)
...++..|.+||+.|..++-.+.+ +....+..+..+.+.++..-......+. +++.-+..|..|...+.+.-.+.
T Consensus 36 ~~~i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r 115 (247)
T PF06705_consen 36 FQDIKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEER 115 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667778888888776665544 2233334444443333322222222222 44554556666666666655554
No 237
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=67.61 E-value=84 Score=37.83 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=36.4
Q ss_pred HHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHh
Q 003941 224 AAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELK 266 (784)
Q Consensus 224 a~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~ 266 (784)
-.++.++..+..+|+.-+++..+....|...+..+..|.+.+.
T Consensus 178 ~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~ 220 (670)
T KOG0239|consen 178 LKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG 220 (670)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 4578899999999999999999988888887777777877776
No 238
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=67.44 E-value=1.7e+02 Score=30.88 Aligned_cols=46 Identities=24% Similarity=0.318 Sum_probs=17.8
Q ss_pred hhhHHHHHHhhhHHHHHHHhhhhhhhh-------hHHhHHHHHHHHHHHHHHH
Q 003941 544 RSEKEEILVKLSHSEKMLAEGKGRANK-------LEEDNAKLRLAVEQSMTRL 589 (784)
Q Consensus 544 ~kEKeei~~KLs~~E~~l~e~K~~~~K-------L~eDn~kLR~ALeqsl~RL 589 (784)
..|++.+..++...+.....+.....+ |..++...|.++..+...|
T Consensus 74 ~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 74 EEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555444444444433333 4444444444444444444
No 239
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=67.23 E-value=53 Score=28.89 Aligned_cols=64 Identities=27% Similarity=0.333 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHH
Q 003941 514 HLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQ 584 (784)
Q Consensus 514 rLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeq 584 (784)
+|+.+.+.+|+.+..++..+..+........+|-...+.. +.++-.++.+|..+++.|++-|+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~-------l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQ-------LGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888887777776666666665554444 455556677777788877777654
No 240
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=67.12 E-value=1.8e+02 Score=33.17 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003941 376 EEMEQSLQKLEKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 376 Eeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqH 409 (784)
......++.+..+|.+.+.....+..++.+||-.
T Consensus 208 ~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~ 241 (395)
T PF10267_consen 208 SQQNLGLQKILEELREIKESQSRLEESIEKLKEQ 241 (395)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444557888899999999999999999999974
No 241
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=66.02 E-value=48 Score=35.90 Aligned_cols=59 Identities=29% Similarity=0.311 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 003941 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRE 433 (784)
Q Consensus 375 kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELre 433 (784)
.+.+...+.++..+-..+...++|...||.|.+++|-..+.-=-.-|||=+++..||..
T Consensus 178 ~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 178 LQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 55677778888888888888899999999999999988876556778888888888886
No 242
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=65.51 E-value=3.7e+02 Score=34.06 Aligned_cols=128 Identities=17% Similarity=0.166 Sum_probs=75.5
Q ss_pred cccCccchhhHHHHHHHHHhhhHHHHHH------------HHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHH
Q 003941 268 LKMDKDKTSIEITEMRKELNGKLSELRR------------LQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTE 335 (784)
Q Consensus 268 lk~~~~kts~~~~~~~~el~ek~sei~r------------lq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~e 335 (784)
++-++.-.--...++|-|..+++...+. +.+++--|...+....+--++..++.+.|++...-.++.+
T Consensus 948 akqn~eis~Ed~kkLhaE~daeLe~~~ael~eleqk~le~~eDea~aRh~kefE~~mrdhrselEe~kKe~eaiineiee 1027 (1424)
T KOG4572|consen 948 AKQNDEISEEDKKKLHAEIDAELEKEFAELIELEQKALECKEDEAFARHEKEFEIEMRDHRSELEEKKKELEAIINEIEE 1027 (1424)
T ss_pred HhhcCcccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence 3334444444556777777777654332 2233333333334445666778889999999999999999
Q ss_pred HHHHHHHhhhcCCCccCCCCCCCCcccC-CCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003941 336 LVAALEKNRKSSNEKIFPDASEYPSRLD-GKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 336 L~a~L~~~r~t~~~k~~~da~e~~~r~~-s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 414 (784)
|++.+-+|.-- .+..| --+-.+ ||+- -.++-.++ +++++.++-|-.++++|-+|.++++-
T Consensus 1028 ~eaeIiQekE~---el~e~---efka~d~Sd~r--------~kie~efA-----a~eaemdeik~~~~edrakqkei~k~ 1088 (1424)
T KOG4572|consen 1028 LEAEIIQEKEG---ELIED---EFKALDESDPR--------AKIEDEFA-----AIEAEMDEIKDGKCEDRAKQKEIDKI 1088 (1424)
T ss_pred HHHHHHhcccc---hHHHH---HhhhccccCcc--------hhHHHHHH-----HHHhhhhhhhhhhhhhHHHHHHHHHH
Confidence 99999888432 11111 000000 1111 12333344 56666677788899999999888874
No 243
>PF13166 AAA_13: AAA domain
Probab=65.39 E-value=2.7e+02 Score=32.47 Aligned_cols=191 Identities=26% Similarity=0.291 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHh--cccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCC
Q 003941 276 SIEITEMRKELNGKLSELRRLQMEL--NRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFP 353 (784)
Q Consensus 276 s~~~~~~~~el~ek~sei~rlq~~l--~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~ 353 (784)
+.+..+...+|...+..+......+ .-..-.........+......+......+...+..+..+|..-.......+..
T Consensus 279 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~L~~K~~~~~~~~~~ 358 (712)
T PF13166_consen 279 DEEYEKLIEELEKAIKKLEKAIENIIEQLESILSENDFYEEFEEDKEELKSAIEALKEELEELKKALEKKIKNPSSPIEL 358 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q ss_pred CCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 003941 354 DASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRE 433 (784)
Q Consensus 354 da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELre 433 (784)
+ ... ..-..+...+..+...+.+.....+...+++..++..+-... -.+...+ |+.+..
T Consensus 359 ~----------~~~-----~~~~~l~~~i~~~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---i~~~~~ 417 (712)
T PF13166_consen 359 E----------EIN-----EDIDELNSIIDELNELIEEHNEKIDNLKKEQNELKDKLWLHL---IAKLKED---IEEYQK 417 (712)
T ss_pred c----------chh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH---HHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhH
Q 003941 434 NNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNL 498 (784)
Q Consensus 434 enE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NL 498 (784)
+.......|..++.+++.. ..++...+..|..|..++.+--.+++.-|.+|.+|
T Consensus 418 ~~~~~~~~i~~~~~~~~~~-----------~~~~~~~~~~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 418 EIKELEKEINSLEKKLKKA-----------KEEIKKIEKEIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
No 244
>PF15294 Leu_zip: Leucine zipper
Probab=65.20 E-value=1.6e+02 Score=32.37 Aligned_cols=136 Identities=24% Similarity=0.227 Sum_probs=73.2
Q ss_pred CccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHH-----HHHHHhhh
Q 003941 271 DKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELV-----AALEKNRK 345 (784)
Q Consensus 271 ~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~-----a~L~~~r~ 345 (784)
+--.|+.||..|-+.|-.-+- --+..||- ....-.+--|+.++..-++.--.|...+++|+ ..+..+..
T Consensus 27 e~t~T~~EV~~~ldgL~~~v~--~~vesEL~----N~~htn~lllrql~~qAek~~lkl~~diselEn~eLLe~i~~~E~ 100 (278)
T PF15294_consen 27 EDTYTSDEVTEMLDGLQVVVK--SEVESELI----NTSHTNVLLLRQLFSQAEKWYLKLQTDISELENRELLEQIAEFEK 100 (278)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--HHHHHHHH----hHHHhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 345778888877666643221 11222221 12223667788888888887666666665554 34444322
Q ss_pred c---CCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 003941 346 S---SNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMD 422 (784)
Q Consensus 346 t---~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmd 422 (784)
+ ++.+..++ ..+++--|-+|. ... .-...|++++..|...||.+|...+......|+
T Consensus 101 ~~~~~~~~~~~~-----------~~~~KL~pl~e~---g~~------~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~ 160 (278)
T PF15294_consen 101 QEFTSSFKPNQE-----------TSKPKLEPLNES---GGS------ELLNKEIDRLQEENEKLKERLKSLEKQATSALD 160 (278)
T ss_pred hhhcccCCcccc-----------cccccccccccc---chH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 11111111 111111122221 111 113557888899999999999999887777777
Q ss_pred hhhHHHHHHH
Q 003941 423 EDSKIIEELR 432 (784)
Q Consensus 423 ed~k~IeELr 432 (784)
+-+++-..|.
T Consensus 161 Ek~kl~~~L~ 170 (278)
T PF15294_consen 161 EKSKLEAQLK 170 (278)
T ss_pred HHHHHHHHHH
Confidence 7655554443
No 245
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=65.17 E-value=40 Score=32.77 Aligned_cols=95 Identities=20% Similarity=0.282 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHH
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKE 391 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e 391 (784)
.++|+..+..+--++.+++++.++.+-+|..+ .++-+|+. +-+..-.-+-+..---...+++...+.|+..++-
T Consensus 15 ~QqLq~ql~~~~~qk~~le~qL~E~~~al~El-----e~l~eD~~-vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~t 88 (119)
T COG1382 15 LQQLQQQLQKVILQKQQLEAQLKEIEKALEEL-----EKLDEDAP-VYKKVGNLLVKVSKEEAVDELEERKETLELRIKT 88 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCcccH-HHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35566667777777888888888888888888 66666641 1111100000000001234555555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 003941 392 TCSERDKALQELTRLKQHLIE 412 (784)
Q Consensus 392 ~~~E~dKa~kEL~RLRqHLLe 412 (784)
...--.+...+|..|+..|.+
T Consensus 89 LekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 89 LEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555443
No 246
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.90 E-value=42 Score=34.73 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHH
Q 003941 314 NLKRVVATLEKENNSLKMEKTELV 337 (784)
Q Consensus 314 sLk~~~~~L~kEn~tlk~~~~eL~ 337 (784)
+++..+..|++|...++.+..++.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666665555544443
No 247
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=64.79 E-value=1.7e+02 Score=29.85 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=13.0
Q ss_pred HHhhhhhhhhhHHhHHHHHHHHHHHHHHH
Q 003941 561 LAEGKGRANKLEEDNAKLRLAVEQSMTRL 589 (784)
Q Consensus 561 l~e~K~~~~KL~eDn~kLR~ALeqsl~RL 589 (784)
+...+..+..+......-|..+-+-+..+
T Consensus 128 ~~~~~~~l~~l~~~l~~~r~~l~~~l~~i 156 (302)
T PF10186_consen 128 LEERKQRLSQLQSQLARRRRQLIQELSEI 156 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444555555444444433
No 248
>PRK10884 SH3 domain-containing protein; Provisional
Probab=64.03 E-value=77 Score=32.91 Aligned_cols=56 Identities=20% Similarity=0.324 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHH
Q 003941 382 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILH 444 (784)
Q Consensus 382 l~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~ 444 (784)
+..|+++|.++..+.+...++.. ++.-++ +++...-...|.+|.++|..++.++..
T Consensus 95 lp~le~el~~l~~~l~~~~~~~~---~~~~~l----~~~~~~~~~~~~~L~~~n~~L~~~l~~ 150 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNTWN---QRTAEM----QQKVAQSDSVINGLKEENQKLKNQLIV 150 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHH---HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555544444444433 222222 223333344566676666555554444
No 249
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=63.19 E-value=2.4e+02 Score=31.05 Aligned_cols=33 Identities=21% Similarity=0.115 Sum_probs=17.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 003941 371 SFPGKEEMEQSLQKLEKDLKETCSERDKALQEL 403 (784)
Q Consensus 371 sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL 403 (784)
++|..|=..=+-..|++-+.+.+.-......|.
T Consensus 61 ~iP~LElY~~sC~EL~~~I~egr~~~~~~E~et 93 (312)
T smart00787 61 TVPLLELYQFSCKELKKYISEGRDLFKEIEEET 93 (312)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666666666655444444443
No 250
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=63.08 E-value=3e+02 Score=33.85 Aligned_cols=100 Identities=24% Similarity=0.310 Sum_probs=51.8
Q ss_pred HHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHH--H
Q 003941 322 LEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDK--A 399 (784)
Q Consensus 322 L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dK--a 399 (784)
|-.+-..-.-.|+.||.-|+.-|.-++ .+|||.+. .=|..+.=|..| +
T Consensus 130 LteqVeaQgEKIrDLE~cie~kr~kLn-------------------------atEEmLQq-----ellsrtsLETqKlDL 179 (861)
T KOG1899|consen 130 LTEQVEAQGEKIRDLETCIEEKRNKLN-------------------------ATEEMLQQ-----ELLSRTSLETQKLDL 179 (861)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhhc-------------------------hHHHHHHH-----HHHhhhhHHHHHhHH
Confidence 333333444557778887777665432 35666332 112222223333 4
Q ss_pred HHHHHHHHHHHHHHhh--hh-hhhhhhhhHHHHHHHHh-HHHHHHHHHHHHHHHHH
Q 003941 400 LQELTRLKQHLIEKAQ--EE-SEKMDEDSKIIEELREN-NEYQRAQILHLENVLKQ 451 (784)
Q Consensus 400 ~kEL~RLRqHLLe~E~--Ee-~ekmded~k~IeELree-nE~~R~~Is~lEraLK~ 451 (784)
-.|+.-||=||..+|. .| ++|..--..+|.|+++. ...+..+..++|..||-
T Consensus 180 maevSeLKLkltalEkeq~e~E~K~R~se~l~qevn~~kv~e~~~erlqye~klks 235 (861)
T KOG1899|consen 180 MAEVSELKLKLTALEKEQNETEKKLRLSENLMQEVNQSKVGEVVQERLQYETKLKS 235 (861)
T ss_pred HHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5678888888877764 22 44555445566666652 23333344455555554
No 251
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=63.00 E-value=1.2e+02 Score=27.68 Aligned_cols=48 Identities=21% Similarity=0.347 Sum_probs=37.1
Q ss_pred hHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003941 494 ELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAE 541 (784)
Q Consensus 494 El~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie 541 (784)
-|.+|..++.+...-..+...++.+++.+..+-..|++.|..+..+..
T Consensus 16 aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~ 63 (89)
T PF13747_consen 16 AIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARAN 63 (89)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHH
Confidence 467788888888777777777888888888888888888877776643
No 252
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=62.78 E-value=3.3e+02 Score=32.50 Aligned_cols=240 Identities=17% Similarity=0.253 Sum_probs=121.7
Q ss_pred HHhhhchhHHHHHHHhHHHHHHHH--HHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhh
Q 003941 211 LLEEKNRSLAAERAAYESQTRQLR--MELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNG 288 (784)
Q Consensus 211 ~le~~~~~~aa~qa~~~~~i~~l~--~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~e 288 (784)
..-+-+.-.|+.+-+.++=+.+.. +++++-+.-+.+--+-|+. ----|+--.+-||=-..+-.--|++|..|.-+
T Consensus 265 ~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~---D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~ 341 (622)
T COG5185 265 FVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKS---DSNKYENYVNAMKQKSQEWPGKLEKLKSEIEL 341 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 333445667777777665444432 2444444444443333432 12235666677777777777888999999999
Q ss_pred hHHHHHHHHHHhccc--ccCCcchHHHHHHHHHH---HHHHhhhhhHhhHHH----------------------------
Q 003941 289 KLSELRRLQMELNRR--EDGDANDVVENLKRVVA---TLEKENNSLKMEKTE---------------------------- 335 (784)
Q Consensus 289 k~sei~rlq~~l~~~--e~e~~~~~~~sLk~~~~---~L~kEn~tlk~~~~e---------------------------- 335 (784)
|.+||+-||....+- .-..++.+.+.++-|+. .|-+|.+-...++.+
T Consensus 342 kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~s 421 (622)
T COG5185 342 KEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDS 421 (622)
T ss_pred HHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888654321 11122223333333322 222232222222222
Q ss_pred HHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 003941 336 LVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 336 L~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~ 415 (784)
|--.|+..|+. |.-+.-+... ...+-++||..-.|--+.-.+..+|-..-.++ +.-+.
T Consensus 422 l~~~i~~~~~~----i~~~~nd~~l----~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~--------------~~~e~ 479 (622)
T COG5185 422 LIQNITRSRSQ----IGHNVNDSSL----KINIEQLFPKGSGINESIKKSILELNDEIQER--------------IKTEE 479 (622)
T ss_pred HHHHhcccHHH----HhhcCCCCce----eeccccCCccccCchHhHHHHHHHHhHHHHHH--------------HHHHh
Confidence 22222222211 2222211111 23345678888787655555555543332111 11111
Q ss_pred hhh----hhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHH
Q 003941 416 EES----EKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLA 482 (784)
Q Consensus 416 Ee~----ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~ 482 (784)
..+ ++.++-.-+|.||.+.+++....++. +....+..|..+++|..+.+.+|+.|.++|.
T Consensus 480 nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~-------a~s~~~~~ke~~e~e~~a~~~E~eklE~el~ 543 (622)
T COG5185 480 NKSITLEEDIKNLKHDINELTQILEKLELELSE-------ANSKFELSKEENERELVAQRIEIEKLEKELN 543 (622)
T ss_pred ccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 122 23344445688888888777664443 3334455566677777777777777765554
No 253
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=62.51 E-value=2.3e+02 Score=30.62 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=33.6
Q ss_pred HHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 003941 465 SEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNAD 537 (784)
Q Consensus 465 ~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~ 537 (784)
-.+..++.+|..|..++......+.... ...|...+.+|. +|++|...++.-...+-+.++.+.
T Consensus 242 P~v~~l~~~i~~l~~~i~~e~~~i~~~~--~~~l~~~~~~~~-------~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 242 PQVPSLQARIKSLRKQIDEQRNQLSGGL--GDSLNEQTADYQ-------RLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhhcCC--CccHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777665443332211 012333343332 566666666666555444444444
No 254
>PF07445 priB_priC: Primosomal replication protein priB and priC; InterPro: IPR010890 This family contains the bacterial primosomal replication proteins priB and priC (approximately 180 residues long). In Escherichia coli, these function in the assembly of the primosome [].
Probab=62.24 E-value=1.8e+02 Score=29.30 Aligned_cols=114 Identities=22% Similarity=0.305 Sum_probs=76.7
Q ss_pred CchhHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 003941 373 PGKEEMEQSLQKLEKDLKETCS-----ERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLEN 447 (784)
Q Consensus 373 ~~kEeme~sl~~L~~eL~e~~~-----E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEr 447 (784)
|--.|++..+..|......-.. -.+|...-+..|..-|-...-...+.--....-|..|++.+ .+--+||+
T Consensus 44 ~yl~Ei~~~l~~L~~~~~~~~~~~~~~laEkL~~Q~~AL~r~l~t~~lr~~~~~~~~~~~~~~Lyq~L----~~hqe~er 119 (173)
T PF07445_consen 44 DYLQEIEQTLAQLQQQVEQNRLQQVAFLAEKLVAQIEALQRELATQSLRKKESKPSSRKPIHQLYQRL----AQHQEYER 119 (173)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccCccCCccccccCchhHHHHHH----HHHHHHHH
Confidence 4567899999999888766433 56788888888877765544322111110024456665543 23356888
Q ss_pred HHHHHHHHHHH-HhhhchHHHHhhHHHHHhhhhhHHHhHHHHHh
Q 003941 448 VLKQTLAKQEE-FKMMNHSEIQKSKEIIDGLNNKLANCMRTIEA 490 (784)
Q Consensus 448 aLK~~~a~qee-lk~~n~~E~~~ske~iedL~~~L~~~mealeA 490 (784)
.|..-+...+. +...++.+-..+.-+|.-+..+|.-|-.||+.
T Consensus 120 RL~~mi~~~e~~l~~~~~~~~~~lq~ei~a~e~RL~RCr~Ai~~ 163 (173)
T PF07445_consen 120 RLLAMIQEREQQLEQAQSFEQQQLQQEILALEQRLQRCRQAIEK 163 (173)
T ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877666554 55666667778888899999999999988876
No 255
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=61.78 E-value=1.1e+02 Score=27.81 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHH
Q 003941 309 NDVVENLKRVVATLEKENNSLKMEKTELVAALEK 342 (784)
Q Consensus 309 ~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~ 342 (784)
++.++.||...+++-.|.+.++.+..+++.++.+
T Consensus 3 ~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~ 36 (79)
T PF08581_consen 3 NELLDAIRQEFENLSQEANSYKHQKDEYEHKINS 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4677888888888888888888877777776543
No 256
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=61.56 E-value=2.2e+02 Score=30.02 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003941 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 377 eme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqH 409 (784)
.+|..-+.|..++..++.|..|..-|..-|+..
T Consensus 92 qlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~ 124 (193)
T PF14662_consen 92 QLEKEQQSLVAEIETLQEENGKLLAERDGLKKR 124 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH
Confidence 333334555555555555555555555544443
No 257
>PF15456 Uds1: Up-regulated During Septation
Probab=61.55 E-value=1.2e+02 Score=29.43 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003941 382 LQKLEKDLKETCSERDKALQELTRLKQHLIE 412 (784)
Q Consensus 382 l~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe 412 (784)
+..+.+-+.+...+..++..-+.++|++||+
T Consensus 83 l~~~~rk~ee~~~eL~~le~R~~~~~~rLLe 113 (124)
T PF15456_consen 83 LAESDRKCEELAQELWKLENRLAEVRQRLLE 113 (124)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677888888888888888999998886
No 258
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=60.00 E-value=3.3e+02 Score=31.62 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003941 382 LQKLEKDLKETCSERDKALQELTRLKQHLI 411 (784)
Q Consensus 382 l~~L~~eL~e~~~E~dKa~kEL~RLRqHLL 411 (784)
++.++..-.+...+.+.+.-.|..|...=+
T Consensus 177 L~~l~~~~~~~~~eld~L~~ql~ELe~~~l 206 (563)
T TIGR00634 177 LKDRQQKEQELAQRLDFLQFQLEELEEADL 206 (563)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhCCc
Confidence 444455555555555666555555555433
No 259
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=59.84 E-value=2.9e+02 Score=33.06 Aligned_cols=93 Identities=20% Similarity=0.350 Sum_probs=50.3
Q ss_pred HhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHH--HHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHH
Q 003941 483 NCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREE--SAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKM 560 (784)
Q Consensus 483 ~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree--~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~ 560 (784)
..+..++.+=.+...=|.+|++-|.+. .+-|.+ ++.....|+.|.|++-.. +.-+-.+.-|..+...
T Consensus 385 ~~l~~le~~l~~~~~~~~~L~~~~~~l----------~~~r~dW~laEae~Ll~lA~q~L~l~-~dv~~A~~~L~~AD~~ 453 (656)
T PRK06975 385 SQFAQLDGKLADAQSAQQALEQQYQDL----------SRNRDDWMIAEVEQMLSSASQQLQLT-GNVQLALIALQNADAR 453 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----------hcChhhhHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHH
Confidence 334444444344445555666666544 233333 444556677777775321 1111122233344444
Q ss_pred HHhhhhhhhhhH-HhHHHHHHHHHHHHHHHhhcc
Q 003941 561 LAEGKGRANKLE-EDNAKLRLAVEQSMTRLNRMS 593 (784)
Q Consensus 561 l~e~K~~~~KL~-eDn~kLR~ALeqsl~RL~~ms 593 (784)
|++ +. -....+|+||.+-|.+|+.+.
T Consensus 454 La~-------~~~P~l~~lR~Ala~Di~~L~~~~ 480 (656)
T PRK06975 454 LAT-------SDSPQAVAVRKAIAQDIERLKAAP 480 (656)
T ss_pred HHh-------cCCcchHHHHHHHHHHHHHHhcCC
Confidence 444 33 236789999999999999876
No 260
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=59.54 E-value=1.7e+02 Score=35.70 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=14.5
Q ss_pred hhHHHhhhhhccccchhhhhhhhHHHHHhhhcC
Q 003941 103 EKEEQISRLNGEYGLLKQNLDATNAALNAFRNG 135 (784)
Q Consensus 103 ekedqi~rl~~engslk~nl~~t~~al~~~r~~ 135 (784)
+-++.|.+.=-++|.++. .+++.|..-|..
T Consensus 125 ~l~~~i~~~id~~g~i~d---~aS~~L~~ir~~ 154 (771)
T TIGR01069 125 PLENDIIACIDDDGKVKD---GASEELDAIRES 154 (771)
T ss_pred HHHHHHHHHhCCCCEECC---CcCHHHHHHHHH
Confidence 334455454456666663 344444444433
No 261
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=59.15 E-value=5e+02 Score=33.40 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHh---hHHHHHHHHHHh
Q 003941 276 SIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKM---EKTELVAALEKN 343 (784)
Q Consensus 276 s~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~---~~~eL~a~L~~~ 343 (784)
--++.++.+|++-+-+++|+|+.++..-. .-++.++.++..+.++...+.. .|...+++|++.
T Consensus 635 ee~~~~~~~~~~~~~~~~r~lee~~~k~~-----k~le~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~ 700 (1072)
T KOG0979|consen 635 EEEIQKLKAEIDIRSSTLRELEEKKQKER-----KELEEEQKKLKLLKRERTKLNSELKSYQQRKERIENL 700 (1072)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34556677777778888888877766522 1234444455555555555555 334444444443
No 262
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=58.61 E-value=3.9e+02 Score=32.06 Aligned_cols=139 Identities=22% Similarity=0.229 Sum_probs=78.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 003941 382 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKM 461 (784)
Q Consensus 382 l~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~ 461 (784)
++.|..-|+.+-.|......+..-||+--+-.+.-++.-+ .-+.-+||..|-.++.=-..|+..-+.....+
T Consensus 161 ~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y---~~~~KelrdtN~q~~s~~eel~~kt~el~~q~----- 232 (596)
T KOG4360|consen 161 LEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLY---GDCVKELRDTNTQARSGQEELQSKTKELSRQQ----- 232 (596)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 6777888888888888888887777776655543222111 01335666666555442222333223222222
Q ss_pred hchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003941 462 MNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAE 541 (784)
Q Consensus 462 ~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie 541 (784)
.|+-++-.+|-|+++++-.|- +|..-|-.-| ++-++|.+.+..|+.-.....|.+-+-|.+|+..+-
T Consensus 233 ---Ee~skLlsql~d~qkk~k~~~-------~Ekeel~~~L---q~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 233 ---EENSKLLSQLVDLQKKIKYLR-------HEKEELDEHL---QAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELK 299 (596)
T ss_pred ---HHHHHHHHHHHhhHHHHHHHH-------HHHHHHHHHH---HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777766552 1112222222 344666777777777777777777666666666553
No 263
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=58.39 E-value=2.2e+02 Score=29.16 Aligned_cols=112 Identities=18% Similarity=0.258 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHH
Q 003941 438 QRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLER 517 (784)
Q Consensus 438 ~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ 517 (784)
++..|....++|...++....+ ..++......+.++..+... +|.+-+..|+ ..||..-..-.+....|+.
T Consensus 36 m~~~l~~ar~~lA~~~a~~k~~----e~~~~~~~~~~~~~~~~A~~---Al~~G~EdLA--r~Al~~k~~~~~~~~~l~~ 106 (219)
T TIGR02977 36 MEDTLVEVRTTSARTIADKKEL----ERRVSRLEAQVADWQEKAEL---ALSKGREDLA--RAALIEKQKAQELAEALER 106 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---HHHCCCHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 3446677777777777754432 33444455555555444332 4454444444 2466677766777788888
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHH
Q 003941 518 ELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSE 558 (784)
Q Consensus 518 ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E 558 (784)
.+..++..+..|...|...++.++..+.-+..++++...++
T Consensus 107 ~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~ 147 (219)
T TIGR02977 107 ELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAAS 147 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999998898888888777666666666654333
No 264
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=57.90 E-value=3.5e+02 Score=31.29 Aligned_cols=150 Identities=22% Similarity=0.302 Sum_probs=80.5
Q ss_pred HHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHh--------
Q 003941 472 EIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVS-------- 543 (784)
Q Consensus 472 e~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~-------- 543 (784)
+.+.+|-.++..|...|+.-..-|.+.|+=||.+-. |+..+++....+...|+--+...+..
T Consensus 14 ~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~----------eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ 83 (508)
T PF04129_consen 14 ENFADLHNQIQECDSILESLEEMLSNFQNDLGSISS----------EIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIV 83 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHc
Confidence 456777778888888887744445555555555444 44556666666555555444332221
Q ss_pred ------------------hhhHHHHHHhhhHHH--------HHHHhhhhhhhhhH-HhHHHHHHHHHHHHHHHhhccCCc
Q 003941 544 ------------------RSEKEEILVKLSHSE--------KMLAEGKGRANKLE-EDNAKLRLAVEQSMTRLNRMSVDS 596 (784)
Q Consensus 544 ------------------~kEKeei~~KLs~~E--------~~l~e~K~~~~KL~-eDn~kLR~ALeqsl~RL~~ms~ds 596 (784)
..++.++..|+.... +...|.+..+.+|+ -=+++.|..|-.-|..|+.-..+.
T Consensus 84 ipP~lI~~I~~~~v~e~~~~~~~~~~~k~~~~~~~~~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~tn~ 163 (508)
T PF04129_consen 84 IPPDLIRSICEGPVNEQYIEELLELLKKKIFFSKDQSFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPKTNS 163 (508)
T ss_pred CCHHHHHhHhcCCCCHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCch
Confidence 222223333322111 22455556667776 445788888888888888754333
Q ss_pred chhhhHHHHH-HHHHHHHhcCCch---HHHHHHHHhcCCC
Q 003941 597 DFLVDRRIVI-KLLVTYFQRNHSK---EVLDLMVRMLGFS 632 (784)
Q Consensus 597 D~~VDRRIVt-kLLLTYf~R~~sK---EVL~LMArMLgFS 632 (784)
. .+=..|+. +-|..|+.+++.+ ||-+.=+..|+|.
T Consensus 164 q-~iQ~~LLk~~~~~~FL~~~~~~~a~El~~~Yv~tM~~~ 202 (508)
T PF04129_consen 164 Q-IIQQVLLKYKELFQFLKKHSPELAKELRQAYVETMSWY 202 (508)
T ss_pred H-HHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 2 11112221 2344555555544 6655555555554
No 265
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=57.76 E-value=3.2e+02 Score=30.73 Aligned_cols=36 Identities=8% Similarity=0.088 Sum_probs=27.0
Q ss_pred cccCccchhhHHHHHHHHHhhhHHHHHHHHHHhccc
Q 003941 268 LKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRR 303 (784)
Q Consensus 268 lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~ 303 (784)
+.||......+...++..+..-...+.||+-++.+.
T Consensus 88 ~~ld~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 88 VVYDNGNEENQKQLLEQQLDNLKDQKKSLDTLKQSI 123 (457)
T ss_pred EEECchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666667777778888888888888888877653
No 266
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=57.70 E-value=2.1e+02 Score=28.54 Aligned_cols=63 Identities=21% Similarity=0.298 Sum_probs=34.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHh
Q 003941 514 HLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLN 590 (784)
Q Consensus 514 rLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~ 590 (784)
+|+.||..++.+...|.+.|..-+.+ ++..+....+....+..++.+-.++...+..++..|.
T Consensus 70 ~L~~EL~~l~sEk~~L~k~lq~~q~k--------------v~eLE~~~~~~~~~l~~~E~ek~q~~e~~~~~ve~L~ 132 (140)
T PF10473_consen 70 QLELELDTLRSEKENLDKELQKKQEK--------------VSELESLNSSLENLLQEKEQEKVQLKEESKSAVEMLQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544433333 3444555555555555566666666666666665553
No 267
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=57.36 E-value=1.8e+02 Score=30.93 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=12.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 003941 386 EKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 386 ~~eL~e~~~E~dKa~kEL~RLRqH 409 (784)
++++.+.+...+.+.+++..|...
T Consensus 203 ek~~~~~~~k~e~~e~e~~~l~e~ 226 (297)
T PF02841_consen 203 EKEIEEEQAKAEAAEKEKEKLEEK 226 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555555555544
No 268
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=56.97 E-value=3.1e+02 Score=30.40 Aligned_cols=81 Identities=21% Similarity=0.271 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhhHHHHHHHHH---HHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHH
Q 003941 504 QYFAEIEAKGHLERELALARE---ESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRL 580 (784)
Q Consensus 504 qfqAE~EA~ErLe~ELa~are---e~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ 580 (784)
|||--.++ |+.++++.+. .+.+--..|..|+..++.+++-+.. -|+.++..|+.+-++..=|+.+.-. |+
T Consensus 88 q~y~q~s~---Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~---sleDfeqrLnqAIErnAfLESELdE-ke 160 (333)
T KOG1853|consen 88 QFYQQESQ---LEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIY---SLEDFEQRLNQAIERNAFLESELDE-KE 160 (333)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhh---hHHHHHHHHHHHHHHHHHHHHHhhH-HH
Confidence 45554433 4555554433 3333334444455555444433221 2233444444433333333322211 45
Q ss_pred HHHHHHHHHhh
Q 003941 581 AVEQSMTRLNR 591 (784)
Q Consensus 581 ALeqsl~RL~~ 591 (784)
.|-.+++||++
T Consensus 161 ~llesvqRLkd 171 (333)
T KOG1853|consen 161 VLLESVQRLKD 171 (333)
T ss_pred HHHHHHHHHHH
Confidence 56677777776
No 269
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=56.76 E-value=63 Score=28.98 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
.-..|-.+|.+|+.|..-+++++.+|.+.+..|-.+
T Consensus 11 p~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s 46 (79)
T PF06657_consen 11 PGEALSEVLKALQDEFGHMKMEHQELQDEYKQMDPS 46 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 456788999999999999999999999999999554
No 270
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=56.69 E-value=93 Score=33.17 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 313 ENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 313 ~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
+.|+..+..++.+....+.=+..||.+|.+.-..
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~ 35 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQAS 35 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5788899999999999999999999999998765
No 271
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=56.40 E-value=55 Score=28.74 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
+..|+..+..+..+...|+.++.++...++.+...
T Consensus 7 ~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l 41 (106)
T PF01920_consen 7 FQELNQQLQQLEQQIQQLERQLRELELTLEELEKL 41 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45677777788888888888888888888888544
No 272
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=55.75 E-value=2e+02 Score=29.47 Aligned_cols=84 Identities=24% Similarity=0.353 Sum_probs=52.6
Q ss_pred HHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhH
Q 003941 251 LQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLK 330 (784)
Q Consensus 251 lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk 330 (784)
|+..++-|..+.++| .|++.++..++.||..|-.+.+.-+.-+++-=+.+.+. +=.|=+.+..|+..-..|+
T Consensus 90 LEq~~~~N~~L~~dl-------~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~r-ll~LWr~v~~lRr~f~elr 161 (182)
T PF15035_consen 90 LEQARKANEALQEDL-------QKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSR-LLSLWREVVALRRQFAELR 161 (182)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccH-HHHHHHHHHHHHHHHHHHH
Confidence 333444444444444 46677788899999999999988888888776666665 3345566666666655554
Q ss_pred hhHHHHHHHHHHhhh
Q 003941 331 MEKTELVAALEKNRK 345 (784)
Q Consensus 331 ~~~~eL~a~L~~~r~ 345 (784)
++- +-.|..||+
T Consensus 162 ~~T---erdL~~~r~ 173 (182)
T PF15035_consen 162 TAT---ERDLSDMRA 173 (182)
T ss_pred HHH---HhhHHHHHH
Confidence 432 344555543
No 273
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=55.74 E-value=4.3e+02 Score=31.61 Aligned_cols=102 Identities=19% Similarity=0.299 Sum_probs=51.1
Q ss_pred HHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHH---HHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHH
Q 003941 223 RAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESF---QDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQME 299 (784)
Q Consensus 223 qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~f---qe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~ 299 (784)
.++.+....-+-.+.+.-.....++--+.++-.|+..-. .+--+.|+=|-.|--.-|+.|..--.+-.
T Consensus 259 k~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~--------- 329 (622)
T COG5185 259 KLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWP--------- 329 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc---------
Confidence 344444444444454444444455555555544443322 22333344333333333333332222222
Q ss_pred hcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHh
Q 003941 300 LNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 300 l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~ 343 (784)
..++.|+..|+-.+.|...|+.++.+|-+.|+.-
T Consensus 330 ----------g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq 363 (622)
T COG5185 330 ----------GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQ 363 (622)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhc
Confidence 3566677777777777777777777777666554
No 274
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=55.57 E-value=3.3e+02 Score=30.63 Aligned_cols=71 Identities=17% Similarity=0.239 Sum_probs=47.7
Q ss_pred hhhHHHHHHhhhHHHHHHHhhhh---hhhhhH-----HhHHHHHHHHHHHHHHHhhcc-------CCcchhhhHHHHHHH
Q 003941 544 RSEKEEILVKLSHSEKMLAEGKG---RANKLE-----EDNAKLRLAVEQSMTRLNRMS-------VDSDFLVDRRIVIKL 608 (784)
Q Consensus 544 ~kEKeei~~KLs~~E~~l~e~K~---~~~KL~-----eDn~kLR~ALeqsl~RL~~ms-------~dsD~~VDRRIVtkL 608 (784)
.++.++++++|++.+.+|+-++. .+.|+. ++.--+---|.++|.||++-- +-.|...+=+.=-.-
T Consensus 67 qR~y~ema~~L~~LeavLqRir~G~~LVekM~~YASDQEVLdMh~FlreAL~rLrqeePq~lqa~V~td~F~E~k~rLQ~ 146 (324)
T PF12126_consen 67 QRDYEEMAGQLGRLEAVLQRIRTGGALVEKMKLYASDQEVLDMHGFLREALERLRQEEPQNLQAAVRTDGFDEFKARLQD 146 (324)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhhcCcccccceecccHHHHHHHHHH
Confidence 47778899999999999999885 455543 555556666778888887632 112334444555566
Q ss_pred HHHHHh
Q 003941 609 LVTYFQ 614 (784)
Q Consensus 609 LLTYf~ 614 (784)
|++.++
T Consensus 147 L~scIt 152 (324)
T PF12126_consen 147 LVSCIT 152 (324)
T ss_pred HHHHHh
Confidence 777776
No 275
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=55.29 E-value=3.5e+02 Score=30.43 Aligned_cols=13 Identities=23% Similarity=0.215 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhH
Q 003941 685 ADLWVDFLLKETE 697 (784)
Q Consensus 685 ADLWVEFLLkEAe 697 (784)
..|||+|-+.|..
T Consensus 356 ~~l~v~~~V~e~d 368 (457)
T TIGR01000 356 RKLKVTAYLPSND 368 (457)
T ss_pred CcEEEEEEeCHHH
Confidence 4577777777663
No 276
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=55.25 E-value=2.6e+02 Score=28.89 Aligned_cols=173 Identities=19% Similarity=0.189 Sum_probs=79.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 003941 387 KDLKETCSERDKALQELTRLKQHLIEKAQE-ESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHS 465 (784)
Q Consensus 387 ~eL~e~~~E~dKa~kEL~RLRqHLLe~E~E-e~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~ 465 (784)
....+...-.+.+-+++.+|++.|-..... ....-+-...-+++|.+.+.....++..|+..|.........+
T Consensus 38 ~~~~~~~~~i~~aP~~~~~l~~~l~~l~~~~~~~~~~~~~~s~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~------ 111 (240)
T PF12795_consen 38 KRAAEYQKQIDQAPKEIRELQKELEALKSQDAPSKEILANLSLEELEQRLSQEQAQLQELQEQLQQENSQLIEI------ 111 (240)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhhccccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 334444444555555666666654443221 1112222234467888888778888888888887653332221
Q ss_pred HHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q 003941 466 EIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAK-GHLERELALAREESAKLSEYLKNADQRAEVSR 544 (784)
Q Consensus 466 E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~-ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~ 544 (784)
....+..-+.+.+....+..-+..|.++...=+ -.-.+|. -.|..|++....++.-+...|..+....+...
T Consensus 112 -----~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~--~~l~~a~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~ 184 (240)
T PF12795_consen 112 -----QTRPERAQQQLSEARQRLQEIRNQLQNLPPNGE--SPLSEAQRWLLQAELAALEAQIEMLEQELLSNNNRQELLQ 184 (240)
T ss_pred -----HccHHHHHHHHHHHHHHHHHHHHHHhccCCCCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHH
Confidence 111222222222222222222222222100000 1111121 23455555566666666666666666655544
Q ss_pred hhHHHHHHhhhHHHHHHHhhhhhhhhhH
Q 003941 545 SEKEEILVKLSHSEKMLAEGKGRANKLE 572 (784)
Q Consensus 545 kEKeei~~KLs~~E~~l~e~K~~~~KL~ 572 (784)
..-+....++...+..+..++..++..+
T Consensus 185 ~qrdl~~~~~~~l~~~l~~Lq~~ln~~R 212 (240)
T PF12795_consen 185 LQRDLLKARIQRLQQQLQALQNLLNQKR 212 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455556666666665554443
No 277
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=54.89 E-value=3.9e+02 Score=30.86 Aligned_cols=38 Identities=37% Similarity=0.478 Sum_probs=22.0
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhhHh-hHHHHHHHHHHh
Q 003941 306 GDANDVVENLKRVVATLEKENNSLKM-EKTELVAALEKN 343 (784)
Q Consensus 306 e~~~~~~~sLk~~~~~L~kEn~tlk~-~~~eL~a~L~~~ 343 (784)
...+..+...+..+.+|.++...++. ...++...|+.-
T Consensus 247 ~~~~~~i~~a~~~i~~L~~~l~~l~~~~~~~l~~~L~~q 285 (582)
T PF09731_consen 247 SDLNSLIAHAKERIDALQKELAELKEEEEEELERALEEQ 285 (582)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445777777777777776666554 233455555444
No 278
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=54.49 E-value=2.2e+02 Score=27.99 Aligned_cols=158 Identities=17% Similarity=0.182 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHH
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKE 391 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e 391 (784)
++.|......+......+..++..|..+|...-.+..+ +. +. ..+. .|.-+..-.--|-.-+..
T Consensus 5 ~~el~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~-Lk--------Gk--a~ds-----iK~y~~~vh~pll~~~~~ 68 (204)
T PF04740_consen 5 VSELHSQAESTNSSLKELKEQLESLQKAINQFISSESS-LK--------GK--AYDS-----IKNYFSEVHIPLLQGLIL 68 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcch-hh--------hH--HHHH-----HHHHHHHHHHHHHHHHHH
Confidence 34556666666666777777777777777776333110 11 11 1111 122222212223333444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhh
Q 003941 392 TCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIE-ELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKS 470 (784)
Q Consensus 392 ~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~Ie-ELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~s 470 (784)
.. +-....|..++...-+.+.......+++ .++ ++...++.....+.++...+...+..-.++-.+.......+
T Consensus 69 ~~---~~~~~~l~~~~~~~~~vd~~~~a~i~e~--~L~~el~~~l~~~~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~ 143 (204)
T PF04740_consen 69 LL---EEYQEALKFIKDFQSEVDSSSNAIIDED--FLESELKKKLNQLKEQIEDLQDEINSILSSVSDIVSLPKPSSSSF 143 (204)
T ss_pred HH---HHHHHHHHhHHHHHHHHcccccccccHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHHHHhhccchHHHH
Confidence 42 3333444555665555543333445553 344 66555666666677766666554443233211221123344
Q ss_pred HHHHHhhhhhHHHhHHHHHh
Q 003941 471 KEIIDGLNNKLANCMRTIEA 490 (784)
Q Consensus 471 ke~iedL~~~L~~~mealeA 490 (784)
...+...+++|...++-|.+
T Consensus 144 ~~~~~~~~~~l~~~lekL~~ 163 (204)
T PF04740_consen 144 IDSLEKAKKKLQETLEKLRA 163 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554444443
No 279
>KOG1574 consensus Predicted cell growth/differentiation regulator, contains RA domain [Extracellular structures]
Probab=54.05 E-value=3.6e+02 Score=30.94 Aligned_cols=78 Identities=19% Similarity=0.168 Sum_probs=36.8
Q ss_pred HHHhhHHHHHhhhhhHHHhHHHHHhh-hhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q 003941 466 EIQKSKEIIDGLNNKLANCMRTIEAK-NVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSR 544 (784)
Q Consensus 466 E~~~ske~iedL~~~L~~~mealeAK-nvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~ 544 (784)
.+...-.+|..|.+.|...-+-+++- .-+..++- ++.|..|..-..++-..|.. .+..+...|+.+.+..+..+
T Consensus 227 ~l~e~l~q~r~l~~eL~~e~e~~e~~~~p~~e~~~--~erv~~eL~~s~~~~~~l~~---~l~av~r~l~~~~~~lq~k~ 301 (375)
T KOG1574|consen 227 DLEEYLKQIRELNKELQAEEELLEAAGPPEPEALL--IERVKTELATSVKIGLRLER---SLEAVNRSLKASLRVLECKK 301 (375)
T ss_pred HHHHHHHHHHHHHHHHhhhHhhhcccCCCchhhhh--HHHHhhHHHHHHHHHHHHHh---hHHHHHHhhhHHHHHHHHHH
Confidence 33344466666766666654333332 12333333 56666666554444333333 33333344555555545444
Q ss_pred hhHH
Q 003941 545 SEKE 548 (784)
Q Consensus 545 kEKe 548 (784)
+|-+
T Consensus 302 ~Ele 305 (375)
T KOG1574|consen 302 RELE 305 (375)
T ss_pred HHHH
Confidence 4433
No 280
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=53.57 E-value=1.4e+02 Score=31.68 Aligned_cols=67 Identities=19% Similarity=0.344 Sum_probs=41.0
Q ss_pred HHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcc
Q 003941 236 ELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNR 302 (784)
Q Consensus 236 el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~ 302 (784)
+|++-...+..--..+..|.++=+-+..|.+.|..+|..-.-++..||...|.=-..|+.+..+.++
T Consensus 12 ~lek~k~~i~~e~~~~e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~ 78 (230)
T PF10146_consen 12 ELEKLKNEILQEVESLENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNK 78 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444445555555556677777777777777777777777777766666666655544
No 281
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=53.21 E-value=1.6e+02 Score=26.89 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 309 NDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 309 ~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
.+-...|...+..|+++...=..-...|+.+|..+..+
T Consensus 7 ~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~ 44 (88)
T PF14389_consen 7 HERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGS 44 (88)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 34567788888888888777666677777777664333
No 282
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=53.21 E-value=89 Score=28.55 Aligned_cols=62 Identities=31% Similarity=0.366 Sum_probs=49.7
Q ss_pred cCccchhhHHHHHHHHHhhh-HHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHH
Q 003941 270 MDKDKTSIEITEMRKELNGK-LSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTEL 336 (784)
Q Consensus 270 ~~~~kts~~~~~~~~el~ek-~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL 336 (784)
|....++.+++.+..|-.++ +.+|..||.-|.. -.+-|+.+|.+.+.|+.||..|..=++.|
T Consensus 1 msp~~~~~d~e~~~~e~k~~Li~ei~~LQ~sL~~-----L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 1 MSPRRNSEDIEKLEKEEKEELIQEILELQDSLEA-----LSDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred CCCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888887775554 5688889988753 44678999999999999999999988888
No 283
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=52.91 E-value=1.3e+02 Score=26.55 Aligned_cols=29 Identities=21% Similarity=0.174 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHHHHh
Q 003941 315 LKRVVATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 315 Lk~~~~~L~kEn~tlk~~~~eL~a~L~~~ 343 (784)
|...+.+|+..++.+..++.-....+..+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L 31 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRL 31 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555
No 284
>PRK09343 prefoldin subunit beta; Provisional
Probab=52.90 E-value=2.1e+02 Score=27.20 Aligned_cols=102 Identities=25% Similarity=0.262 Sum_probs=62.1
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccC--------ccchhhHHHHHHHHHhhhHHHH
Q 003941 222 ERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMD--------KDKTSIEITEMRKELNGKLSEL 293 (784)
Q Consensus 222 ~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~--------~~kts~~~~~~~~el~ek~sei 293 (784)
++....+++.++. .+.+...++..-...|+-+.+.|+.-.+||..|.=| +-=...+..++..+|++++.-|
T Consensus 5 ~~~~~q~~~~~~q-~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i 83 (121)
T PRK09343 5 IPPEVQAQLAQLQ-QLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL 83 (121)
T ss_pred hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence 4445555555554 345555555555666777777788888888877622 1112345566777777766655
Q ss_pred HHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 294 RRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 294 ~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
. ..|..|++....+..++.++...|..+-..
T Consensus 84 e----------------------~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 84 E----------------------LRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred H----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 456666666666666666666666665443
No 285
>PRK10698 phage shock protein PspA; Provisional
Probab=52.54 E-value=2.7e+02 Score=29.01 Aligned_cols=21 Identities=14% Similarity=0.243 Sum_probs=10.2
Q ss_pred HHhhHHHHHhhhhhHHHhHHH
Q 003941 467 IQKSKEIIDGLNNKLANCMRT 487 (784)
Q Consensus 467 ~~~ske~iedL~~~L~~~mea 487 (784)
++.+++.+..+++-|+..|..
T Consensus 33 i~em~~~l~~~r~alA~~~A~ 53 (222)
T PRK10698 33 IQEMEDTLVEVRSTSARALAE 53 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555543
No 286
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=52.44 E-value=2.6e+02 Score=31.97 Aligned_cols=47 Identities=28% Similarity=0.259 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhH-HHHHHHHhHHHHHHHHHHHH
Q 003941 396 RDKALQELTRLKQHLIEKAQEESEKMDEDSK-IIEELRENNEYQRAQILHLE 446 (784)
Q Consensus 396 ~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k-~IeELreenE~~R~~Is~lE 446 (784)
.+--+-|+..|||.|-.+|+ ||+=++. -+.++.+..|.+..+|+-||
T Consensus 271 ~elHq~Ei~~LKqeLa~~EE----K~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 271 TELHQNEIYNLKQELASMEE----KMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44456799999999999963 5554432 13445556888899999988
No 287
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=52.36 E-value=91 Score=28.41 Aligned_cols=91 Identities=15% Similarity=0.241 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccC-----CCCccCCCCCchhHHHHHHHHH
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLD-----GKMVSSESFPGKEEMEQSLQKL 385 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~-----s~~~~~~sf~~kEeme~sl~~L 385 (784)
....|+..+..|-.+...|..+++|....++.+...- || +.+-...- .+.+ -..+.++..++.+
T Consensus 7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~-----~d-~~vy~~VG~vfv~~~~~-----ea~~~Le~~~e~l 75 (105)
T cd00632 7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA-----DD-AEVYKLVGNVLVKQEKE-----EARTELKERLETI 75 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----Cc-chHHHHhhhHHhhccHH-----HHHHHHHHHHHHH
Confidence 3455666777777778888888888888888885441 11 11111110 0111 1234455555555
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003941 386 EKDLKETCSERDKALQELTRLKQHLIE 412 (784)
Q Consensus 386 ~~eL~e~~~E~dKa~kEL~RLRqHLLe 412 (784)
..+++......+...+++..|+.+|-+
T Consensus 76 e~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 76 ELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566666666666665543
No 288
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=52.08 E-value=4.5e+02 Score=30.76 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHH-------HHhHHHHHHHHHHHHHHHHH
Q 003941 375 KEEMEQSLQKLEKDL-------KETCSERDKALQELTRLKQH 409 (784)
Q Consensus 375 kEeme~sl~~L~~eL-------~e~~~E~dKa~kEL~RLRqH 409 (784)
.++|.-.+..++-+| .+...|++++.+||..-|+.
T Consensus 76 lddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e 117 (499)
T COG4372 76 LDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQE 117 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444 45555666666666655543
No 289
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=51.56 E-value=2.8e+02 Score=33.91 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=10.9
Q ss_pred hhhhHHHhhhhhccccchhhh
Q 003941 101 LKEKEEQISRLNGEYGLLKQN 121 (784)
Q Consensus 101 lkekedqi~rl~~engslk~n 121 (784)
+.+-.+.|.+.=-++|.++.+
T Consensus 128 ~~~l~~~i~~~id~~g~i~d~ 148 (782)
T PRK00409 128 LPELEQEIHNCIDEEGEVKDS 148 (782)
T ss_pred cHHHHHHHHHHhCCCCEECCC
Confidence 344445555544556666544
No 290
>PRK10869 recombination and repair protein; Provisional
Probab=51.50 E-value=4.6e+02 Score=30.74 Aligned_cols=31 Identities=16% Similarity=0.166 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003941 382 LQKLEKDLKETCSERDKALQELTRLKQHLIE 412 (784)
Q Consensus 382 l~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe 412 (784)
...++++|.+.........+++.-|+-.+=+
T Consensus 166 ~~~~~~~l~~l~~~~~~~~~~~d~l~fql~E 196 (553)
T PRK10869 166 WHQSCRDLAQHQQQSQERAARKQLLQYQLKE 196 (553)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444445555544444555555555554333
No 291
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=50.80 E-value=1.7e+02 Score=30.36 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=68.4
Q ss_pred hhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHH--
Q 003941 214 EKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLS-- 291 (784)
Q Consensus 214 ~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~s-- 291 (784)
.+-.-++.....+..+|++|..|++.-......++..+...++.-.++++++..+.--+....--|..|-..|..=+.
T Consensus 42 ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d 121 (251)
T PF11932_consen 42 KRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELD 121 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334445555666777888888888877777777777777777777788888877766666666666666666654222
Q ss_pred ----------HHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhh
Q 003941 292 ----------ELRRLQMELNRREDGDANDVVENLKRVVATLEKEN 326 (784)
Q Consensus 292 ----------ei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn 326 (784)
.|.+|...+.. ..-...+.++++++.+.-|.
T Consensus 122 ~Pf~~~eR~~Rl~~L~~~l~~----~dv~~~ek~r~vlea~~~E~ 162 (251)
T PF11932_consen 122 LPFLLEERQERLARLRAMLDD----ADVSLAEKFRRVLEAYQIEM 162 (251)
T ss_pred CCCChHHHHHHHHHHHHhhhc----cCCCHHHHHHHHHHHHHHHH
Confidence 23333333222 11135567777777776664
No 292
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=50.28 E-value=1.4e+02 Score=33.37 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=41.3
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHhcccccC-CcchHHHHHHHHHHHHHHhhhhhHhhHHHHH
Q 003941 275 TSIEITEMRKELNGKLSELRRLQMELNRREDG-DANDVVENLKRVVATLEKENNSLKMEKTELV 337 (784)
Q Consensus 275 ts~~~~~~~~el~ek~sei~rlq~~l~~~e~e-~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~ 337 (784)
.|..|+.+.++|++=..++.+.+.++-.+.+. .++--+-.+|+-|..|++|..++-..++=|+
T Consensus 292 ~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVle 355 (359)
T PF10498_consen 292 ASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVLE 355 (359)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhheeh
Confidence 44556666666666555566655555544433 2334677899999999999988887776554
No 293
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=50.26 E-value=52 Score=28.64 Aligned_cols=47 Identities=28% Similarity=0.446 Sum_probs=35.5
Q ss_pred HHHhHHHHH---HHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcc
Q 003941 223 RAAYESQTR---QLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLK 269 (784)
Q Consensus 223 qa~~~~~i~---~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk 269 (784)
|..++.+|+ .+..||.+=+.-.-+++.+||+-.++|..|.+++..|+
T Consensus 3 QsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 3 QSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555554 35567777666666788999999999999999988775
No 294
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.95 E-value=3.7e+02 Score=29.23 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=28.8
Q ss_pred hhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHH
Q 003941 476 GLNNKLANCMRTIEAKNVELLNLQTALGQYFAEI 509 (784)
Q Consensus 476 dL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~ 509 (784)
.+.+-+++..+++..+++|+.||-.-|.+|.++.
T Consensus 41 ~~~nS~~efar~lS~~~~e~e~l~~~l~etene~ 74 (246)
T KOG4657|consen 41 RSMNSLVEFARALSQSQVELENLKADLRETENEL 74 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777899999999999999999999987
No 295
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=49.82 E-value=4.1e+02 Score=29.67 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=32.8
Q ss_pred HhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003941 552 VKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 552 ~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 591 (784)
..+.-.+..++-.|..+.+|+.++..++--|+.+=.-...
T Consensus 95 ~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~ 134 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASS 134 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4566778888888999999999999999999877665554
No 296
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=49.44 E-value=3e+02 Score=27.99 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHh
Q 003941 577 KLRLAVEQSMTRLN 590 (784)
Q Consensus 577 kLR~ALeqsl~RL~ 590 (784)
+.|.-|..||+|+-
T Consensus 185 ~Ar~Ii~~AiQR~A 198 (201)
T PF12072_consen 185 KARRIIATAIQRYA 198 (201)
T ss_pred HHHHHHHHHHHhhc
Confidence 45667778888763
No 297
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=49.44 E-value=1.5e+02 Score=27.97 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhh
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~ 345 (784)
.+.|+.++..|..+...|...+.++...+++...
T Consensus 15 ~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~ 48 (140)
T PRK03947 15 LQALQAQIEALQQQLEELQASINELDTAKETLEE 48 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666777777777777777777777666643
No 298
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=49.26 E-value=3e+02 Score=27.90 Aligned_cols=41 Identities=22% Similarity=0.356 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 003941 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 375 kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~ 415 (784)
-+.+...|+.++.++.++-.+.|++.+.-.+.|++|.+...
T Consensus 29 ~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~ 69 (159)
T PF05384_consen 29 YERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSR 69 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677778888888888888999999999999999888754
No 299
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=49.04 E-value=4.5e+02 Score=32.03 Aligned_cols=71 Identities=14% Similarity=0.153 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHh
Q 003941 519 LALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLN 590 (784)
Q Consensus 519 La~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~ 590 (784)
+..++.++..|.+.++..+.......++-++.+..+......+.+....+..-. .-..+|+.|..-+..|+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 444555555555555555555444444433333333333333444433333333 44567777777777774
No 300
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=48.93 E-value=3.9e+02 Score=29.18 Aligned_cols=155 Identities=15% Similarity=0.268 Sum_probs=73.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHH---HHhhHH----HHHhhhhhHHHhHHHHHhhhhhHhhHH
Q 003941 427 IIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSE---IQKSKE----IIDGLNNKLANCMRTIEAKNVELLNLQ 499 (784)
Q Consensus 427 ~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E---~~~ske----~iedL~~~L~~~mealeAKnvEl~NLQ 499 (784)
.+..+.+-+++++..|.+|+..+-.++-..-.++++..+- +.+..- .|--++..++-.+....+ .....++
T Consensus 170 ~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pqir~iq~nN~~Li~ki~~a~~~TIP~~k~~~~ial~l~~Q--k~a~~~~ 247 (333)
T PF05816_consen 170 ELADLEQALFRLEQRIQDLQLSRQVAIQTAPQIRMIQNNNRELIEKIQSAITTTIPAWKNQLAIALALQRQ--KKALDAQ 247 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 4455666788999999999988877655544444444321 111111 111122222111111111 1223445
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHH
Q 003941 500 TALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLR 579 (784)
Q Consensus 500 tALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR 579 (784)
.|+....++. |.+-...+++-....+...-..--.+|..++==+.++..+.....+..+++......+.....+.
T Consensus 248 ~av~~tTnel-----l~~nAe~lk~~~~~iak~~~~~~vdiEtL~~~~~~li~ti~e~~~i~~e~~~~r~~~~~~l~~l~ 322 (333)
T PF05816_consen 248 QAVNDTTNEL-----LRRNAEMLKQNSVEIAKEAERPVVDIETLKKAFQNLIETIEETDQIQEEGREKRAQAEQELEQLE 322 (333)
T ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555544 22222222222222221100111112333322233555666666777777776666777777777
Q ss_pred HHHHHHHHH
Q 003941 580 LAVEQSMTR 588 (784)
Q Consensus 580 ~ALeqsl~R 588 (784)
.-|.+.|.+
T Consensus 323 ~~lk~~l~~ 331 (333)
T PF05816_consen 323 EELKQRLIR 331 (333)
T ss_pred HHHHHHHHh
Confidence 666666654
No 301
>PF15294 Leu_zip: Leucine zipper
Probab=48.14 E-value=4.2e+02 Score=29.27 Aligned_cols=142 Identities=20% Similarity=0.239 Sum_probs=69.1
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhH--HHHHhhhhhHhhHHHHH
Q 003941 425 SKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCM--RTIEAKNVELLNLQTAL 502 (784)
Q Consensus 425 ~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~m--ealeAKnvEl~NLQtAL 502 (784)
.++|+-|.++|+..+..+-.+|..+-..+-. -.+++.++.+|.......- ..+-.+..++..|..-+
T Consensus 131 ~kEi~rLq~EN~kLk~rl~~le~~at~~l~E-----------k~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~ 199 (278)
T PF15294_consen 131 NKEIDRLQEENEKLKERLKSLEKQATSALDE-----------KSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKM 199 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHH
Confidence 3678889999999999999988877655332 2334455555544111110 11122344666666666
Q ss_pred HHHHHHHHHh-hhhHHHHHHHHHHHHH-HHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHH
Q 003941 503 GQYFAEIEAK-GHLERELALAREESAK-LSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRL 580 (784)
Q Consensus 503 gqfqAE~EA~-ErLe~ELa~aree~a~-Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ 580 (784)
.....+.+.. ...+..+..+.+.+.. ....|+.-.+ +..+.+| +..|+.+ -..+.-.|.-+.+--+.+.-||+
T Consensus 200 a~lK~e~ek~~~d~~~~~k~L~e~L~~~KhelL~~Qeq-L~~aeke---LekKfqq-T~ay~NMk~~ltkKn~QiKeLRk 274 (278)
T PF15294_consen 200 AALKSELEKALQDKESQQKALEETLQSCKHELLRVQEQ-LSLAEKE---LEKKFQQ-TAAYRNMKEILTKKNEQIKELRK 274 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hhcchhh---HHHHhCc-cHHHHHhHHHHHhccHHHHHHHH
Confidence 6655554322 2222233333333222 1122222112 2222222 2234332 33344455555566666666776
Q ss_pred HH
Q 003941 581 AV 582 (784)
Q Consensus 581 AL 582 (784)
.|
T Consensus 275 rl 276 (278)
T PF15294_consen 275 RL 276 (278)
T ss_pred Hh
Confidence 55
No 302
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=47.89 E-value=87 Score=28.64 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=26.0
Q ss_pred HhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHH
Q 003941 562 AEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIV 605 (784)
Q Consensus 562 ~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIV 605 (784)
.++..++.+|..|-.+|-..|+++.-|+++.-. ...-|-+||+
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~-~~~Evs~rL~ 77 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEE-ANREVSRRLD 77 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHH
Confidence 556666677777777777777777776655442 2223445554
No 303
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=47.88 E-value=4.4e+02 Score=29.46 Aligned_cols=107 Identities=24% Similarity=0.357 Sum_probs=56.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003941 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLA 454 (784)
Q Consensus 375 kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a 454 (784)
-.+||..+++|++|-.--+=-.|-+..=|..=||. .+.+.-+..-+-++.--+-|..+.++..|..|+| .|... .
T Consensus 20 IqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK-~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlsh---dlq~K-e 94 (307)
T PF10481_consen 20 IQELEQQLDKLKKERQQRQFQLESLEAALQKQKQK-VEEEKNEYSALKRENQSLMESCENLEKTRQKLSH---DLQVK-E 94 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhH---HHhhh-H
Confidence 35788888888777666555566666666665555 3333333344444444444455555566665555 22211 0
Q ss_pred HHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHH
Q 003941 455 KQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIE 489 (784)
Q Consensus 455 ~qeelk~~n~~E~~~ske~iedL~~~L~~~meale 489 (784)
.+- ..-+-.+...|.+|+.|.++|--|=..++
T Consensus 95 ~qv---~~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 95 SQV---NFLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 01123445566677777776666644333
No 304
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=47.56 E-value=2.6e+02 Score=34.13 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=22.6
Q ss_pred ChhHHHHHHHHHHHhhhHHh-HhHhhhhHHHHhhhhHHHhhhh
Q 003941 70 DPEIERYKAEIKRLQESEAE-IKALSVNYAALLKEKEEQISRL 111 (784)
Q Consensus 70 ~~eie~ykaei~~lq~seae-ikals~nyaallkekedqi~rl 111 (784)
|.+|..+..++..|...+.+ +..+-......+....+.|...
T Consensus 221 p~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~ 263 (771)
T TIGR01069 221 PQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFL 263 (771)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588888888777765543 3333334444444444444333
No 305
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.30 E-value=59 Score=35.57 Aligned_cols=44 Identities=34% Similarity=0.379 Sum_probs=38.7
Q ss_pred HHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHH
Q 003941 466 EIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIE 510 (784)
Q Consensus 466 E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~E 510 (784)
-|+.|+++|..|++.|......|-.||-.|.||-.- .+|+.+.|
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKad-~e~~~~~e 269 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILEKDKQISNLKAD-KEYQKELE 269 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCcc-hhHHHHHH
Confidence 578999999999999999999999999999999765 77776653
No 306
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=46.63 E-value=1.4e+02 Score=27.67 Aligned_cols=101 Identities=17% Similarity=0.246 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCc-----cCCCCCC--------CCcccCCCCccCCCCCchhH
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEK-----IFPDASE--------YPSRLDGKMVSSESFPGKEE 377 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k-----~~~da~e--------~~~r~~s~~~~~~sf~~kEe 377 (784)
..+.|+..+..|.++.+.|...+.++...+..+..-.+.+ +.|=... ..++.. +.--..|-..-.
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~--v~iG~g~~vE~~ 84 (129)
T cd00584 7 QLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVL--VDLGTGYYVEKD 84 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEE--EEcCCCEEEEec
Confidence 4677888899999999999998888888888776553310 0010000 000000 000011112224
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003941 378 MEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 378 me~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~ 413 (784)
+......+.+.++......++..+++..|+.++-..
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~ 120 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTL 120 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777888888888887775444
No 307
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=46.24 E-value=1.7e+02 Score=28.37 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=8.3
Q ss_pred HHHhhhhh----HhhHHHHHHHHHHHH
Q 003941 487 TIEAKNVE----LLNLQTALGQYFAEI 509 (784)
Q Consensus 487 aleAKnvE----l~NLQtALgqfqAE~ 509 (784)
++++++.+ |.+|+..|+.+-..+
T Consensus 6 ~l~as~~el~n~La~Le~slE~~K~S~ 32 (107)
T PF09304_consen 6 ALEASQNELQNRLASLERSLEDEKTSQ 32 (107)
T ss_dssp --------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhH
Confidence 34555443 445666666555444
No 308
>PRK14154 heat shock protein GrpE; Provisional
Probab=45.80 E-value=2.6e+02 Score=29.49 Aligned_cols=72 Identities=24% Similarity=0.412 Sum_probs=49.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003941 371 SFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLK 450 (784)
Q Consensus 371 sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK 450 (784)
.||..++++..++.|++++.+.....-++..|..-+|.+ ..++.++--+.--+ +++..| =-=+.+|+++|.
T Consensus 50 ~~~~~~~l~~el~~le~e~~elkd~~lRl~ADfeNyRKR-~~kE~e~~~~~a~e-~~~~~L-------LpVlDnLeRAL~ 120 (208)
T PRK14154 50 EFPSREKLEGQLTRMERKVDEYKTQYLRAQAEMDNLRKR-IEREKADIIKFGSK-QLITDL-------LPVADSLIHGLE 120 (208)
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHH-------hhHHhHHHHHHh
Confidence 589999999999999999999988888889999999988 45543332222221 222222 122577788776
Q ss_pred H
Q 003941 451 Q 451 (784)
Q Consensus 451 ~ 451 (784)
.
T Consensus 121 ~ 121 (208)
T PRK14154 121 S 121 (208)
T ss_pred c
Confidence 4
No 309
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=45.45 E-value=4e+02 Score=29.12 Aligned_cols=43 Identities=19% Similarity=0.296 Sum_probs=26.9
Q ss_pred hhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHH
Q 003941 469 KSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEA 511 (784)
Q Consensus 469 ~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA 511 (784)
=.+..++.+...|......+..+..+|..|+.-|.++..+.+.
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~ 260 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEE 260 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666666666666666666666666666666644
No 310
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=45.27 E-value=1.8e+02 Score=26.45 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
....|+..|..+......|...+.++...+....+.
T Consensus 7 ~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l 42 (129)
T cd00890 7 QLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETL 42 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888889999999988888888877777554
No 311
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=45.22 E-value=5.7e+02 Score=30.02 Aligned_cols=69 Identities=20% Similarity=0.323 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHhcc-------------cccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHH
Q 003941 276 SIEITEMRKELNGKLSELRRLQMELNR-------------REDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEK 342 (784)
Q Consensus 276 s~~~~~~~~el~ek~sei~rlq~~l~~-------------~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~ 342 (784)
--+.+.+..+...|..++..|=.--++ ..-..++|++.-|...|..|+.+..-...+-..++.++.+
T Consensus 244 Edq~~~LsE~~~k~~q~Le~~~~~~~~~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s 323 (593)
T KOG4807|consen 244 EDQQNRLSEEIEKKWQELEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSALRS 323 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcCCCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCchhhHhh
Confidence 344556666666666666554333222 2223456899999888888888887777777777777766
Q ss_pred hh
Q 003941 343 NR 344 (784)
Q Consensus 343 ~r 344 (784)
.+
T Consensus 324 ~~ 325 (593)
T KOG4807|consen 324 QE 325 (593)
T ss_pred hh
Confidence 54
No 312
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=44.88 E-value=1.2e+02 Score=29.33 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=37.3
Q ss_pred HHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHH
Q 003941 529 LSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRI 604 (784)
Q Consensus 529 Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRI 604 (784)
|.+.|......++.+..|...+...|......+.+++..+..+........+-+.+.++.........+..+++..
T Consensus 32 LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~~~~~~~~~~~~~~~ 107 (160)
T PF13094_consen 32 LERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLDDSGVLELPELPQKSL 107 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccccccccccccccccc
Confidence 3333333344444444443333333444455555555555555555555555556666666555544444444444
No 313
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=44.73 E-value=1.8e+02 Score=31.01 Aligned_cols=94 Identities=20% Similarity=0.310 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh-hhhhhh--------------------------hhhhHHH
Q 003941 376 EEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ-EESEKM--------------------------DEDSKII 428 (784)
Q Consensus 376 Eeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~-Ee~ekm--------------------------ded~k~I 428 (784)
++++..+..|..++.++..=+.|++..|.++=+..-.... .+...| ..++.++
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 4666777777777777777777777777766533111000 010000 2456677
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhh
Q 003941 429 EELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNK 480 (784)
Q Consensus 429 eELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~ 480 (784)
.=+..+.+++|..+.+||.+|.+.. .++..++.+|+.|+++
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~-----------~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQ-----------QTISSLRREVESLRAD 122 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 7777889999999999999887652 2355566666666544
No 314
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=44.48 E-value=1.4e+02 Score=27.52 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
..+.++..+..+.-+...|+.++++.+-.++.+...
T Consensus 11 ~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l 46 (110)
T TIGR02338 11 QLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERL 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345667777778888888899999999998888443
No 315
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.42 E-value=6.6e+02 Score=30.53 Aligned_cols=95 Identities=31% Similarity=0.358 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHh-------hHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHH
Q 003941 311 VVENLKRVVATLEKENNSLKM-------EKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQ 383 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~-------~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~ 383 (784)
-+.+|+.-+..+.++..++.+ +...+++.|..-.+..-+- -++ |+..+. ..
T Consensus 367 hassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~dda--------------r~~-----pe~~d~---i~ 424 (654)
T KOG4809|consen 367 HASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDA--------------RMN-----PEFADQ---IK 424 (654)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh--------------hcC-----hhhHHH---HH
Confidence 455677777777777776655 3455666666654431111 122 233333 34
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 003941 384 KLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEEL 431 (784)
Q Consensus 384 ~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeEL 431 (784)
.|+.+...-.-|.-|+..|.+||=--|-+. +.+|-|-| +-|.||
T Consensus 425 ~le~e~~~y~de~~kaqaevdrlLeilkev---eneKnDkd-kkiael 468 (654)
T KOG4809|consen 425 QLEKEASYYRDECGKAQAEVDRLLEILKEV---ENEKNDKD-KKIAEL 468 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhhhcccc-chhhhc
Confidence 444555555555666666666664443333 35566665 335554
No 316
>PRK09343 prefoldin subunit beta; Provisional
Probab=44.40 E-value=1.6e+02 Score=28.03 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhh
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (784)
.+.++..+..+-.+...|..++++.+-.++.+.
T Consensus 16 ~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~ 48 (121)
T PRK09343 16 LQQLQQQLERLLQQKSQIDLELREINKALEELE 48 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666778888888888888888883
No 317
>PRK02292 V-type ATP synthase subunit E; Provisional
Probab=43.99 E-value=3.3e+02 Score=26.89 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=32.2
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHH
Q 003941 566 GRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTY 612 (784)
Q Consensus 566 ~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTY 612 (784)
.+-..|..-..-|...|+.+..+|..++. +++ +.++.+|+..+
T Consensus 70 ~rr~~L~~r~~~l~~v~~~a~~kL~~~~~--~~y--~~~l~~li~~~ 112 (188)
T PRK02292 70 AKRERLNARKEVLEDVRNQVEDEIASLDG--DKR--EELTKSLLDAA 112 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcch--hhH--HHHHHHHHHhc
Confidence 34446777778888899999999988873 344 56888888877
No 318
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=43.37 E-value=4.2e+02 Score=29.99 Aligned_cols=117 Identities=18% Similarity=0.270 Sum_probs=81.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHH
Q 003941 502 LGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLA 581 (784)
Q Consensus 502 LgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~A 581 (784)
|..|+.-+|.==.++.++....+++..++..+...+.++-..-|++.- +-|.+....+..-=..+.++-++.+.++..
T Consensus 199 l~~~~~~id~H~~lr~~~~~~~~~L~~~a~QfRaIQrrlL~r~kd~~p--~~l~~L~~LLe~ty~~l~~~~d~~~~~~~~ 276 (377)
T PF14728_consen 199 LQEYFEIIDQHFELRQELKELEEELDERAQQFRAIQRRLLTRFKDKNP--APLDNLDTLLEGTYRQLIALADEIEELQAN 276 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777776666677888888888888888888888887766666432 245567777776667788888999999999
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHHHHHHHhcCCchHHHHHHHHhcCC
Q 003941 582 VEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGF 631 (784)
Q Consensus 582 Leqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~R~~sKEVL~LMArMLgF 631 (784)
+.++-.+|+... +|+.-|+--+++ -..+...++-.+|+.
T Consensus 277 l~~a~~~L~~~~---------~Ll~~L~~l~~~--l~~~~~~~l~s~~~~ 315 (377)
T PF14728_consen 277 LKRAGASLSCAT---------QLLILLLKLRFN--LNEDDVELLESVFSP 315 (377)
T ss_pred HHHHhhhHHHHH---------HHHHHHHHhhcC--CCHHHHHHHHHHcCC
Confidence 999999998744 344333222233 344666666666654
No 319
>PRK11519 tyrosine kinase; Provisional
Probab=43.33 E-value=2.8e+02 Score=33.20 Aligned_cols=94 Identities=16% Similarity=0.198 Sum_probs=47.0
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhc
Q 003941 222 ERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELN 301 (784)
Q Consensus 222 ~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~ 301 (784)
++.....-+.-|..+|..-+.++...+.+|++=+..|..+ .++.+ ...-+..+ .+|..++.+++....+|+
T Consensus 261 k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~v-------d~~~e-a~~~l~~~-~~l~~ql~~l~~~~~~l~ 331 (719)
T PRK11519 261 KSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSV-------DLPLE-AKAVLDSM-VNIDAQLNELTFKEAEIS 331 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-------CchHH-HHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 3334445556666677777777777777776554444432 11110 00111111 345555555555555555
Q ss_pred ccccCCcchHHHHHHHHHHHHHHh
Q 003941 302 RREDGDANDVVENLKRVVATLEKE 325 (784)
Q Consensus 302 ~~e~e~~~~~~~sLk~~~~~L~kE 325 (784)
.+ -.+....|..|+..+..|+++
T Consensus 332 ~~-y~~~hP~v~~l~~~~~~L~~~ 354 (719)
T PRK11519 332 KL-YTKEHPAYRTLLEKRKALEDE 354 (719)
T ss_pred HH-hcccCcHHHHHHHHHHHHHHH
Confidence 43 223345666666665555444
No 320
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=43.30 E-value=6.7e+02 Score=30.28 Aligned_cols=84 Identities=20% Similarity=0.276 Sum_probs=48.2
Q ss_pred cchhhHHhhHHhhhchhHHHHHHHhHH---HHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhH
Q 003941 202 QGKEKELADLLEEKNRSLAAERAAYES---QTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIE 278 (784)
Q Consensus 202 ~~~~~e~~d~le~~~~~~aa~qa~~~~---~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~ 278 (784)
+|+.-+-+.+|++-..-|+|.++-.+. =+..+.++|=.+-.+|.+==+++-++. ..++.-.+-..
T Consensus 189 ~Gd~ieA~evl~~~ee~~~~L~~~~e~IP~L~~e~~~~lP~ql~~Lk~Gyr~m~~~g------------Y~l~~~~id~~ 256 (570)
T COG4477 189 SGDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLKAGYRDMKEEG------------YHLEHVNIDSR 256 (570)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHcc------------CCcccccHHHH
Confidence 344445667777777777777765431 234445555555555555555555442 23444445556
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 003941 279 ITEMRKELNGKLSELRRLQ 297 (784)
Q Consensus 279 ~~~~~~el~ek~sei~rlq 297 (784)
|..|+..|.+-.+.|.+|.
T Consensus 257 ~~~L~~~l~~~~~~l~~Le 275 (570)
T COG4477 257 LERLKEQLVENSELLTQLE 275 (570)
T ss_pred HHHHHHHHHHHHhHHHHhh
Confidence 7777777776666666554
No 321
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=43.22 E-value=5.2e+02 Score=29.00 Aligned_cols=47 Identities=30% Similarity=0.422 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhH
Q 003941 496 LNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEK 547 (784)
Q Consensus 496 ~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEK 547 (784)
.|=+.-+..|-+-+|+ ++..|+.++.++.=|-+-|.+|...++. +||
T Consensus 203 qne~~kv~k~~~Kqes---~eERL~QlqsEN~LLrQQLddA~~K~~~--kek 249 (305)
T PF14915_consen 203 QNEQDKVNKYIGKQES---LEERLSQLQSENMLLRQQLDDAHNKADN--KEK 249 (305)
T ss_pred HhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3445555666666644 6888899999999999999999888765 555
No 322
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=43.03 E-value=3.2e+02 Score=26.83 Aligned_cols=107 Identities=24% Similarity=0.293 Sum_probs=68.5
Q ss_pred chhHHHHH-HHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHH
Q 003941 216 NRSLAAER-AAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELR 294 (784)
Q Consensus 216 ~~~~aa~q-a~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~ 294 (784)
..++||-. ++.+.+.++|..|+.+=..|.. -+++++..+.+..+.+|..+ .++..++.+++..|+
T Consensus 14 s~sfaA~~~~~v~~~l~~LEae~q~L~~kE~---~r~~~~k~~ae~a~~~L~~~-----------~~~~~~i~e~~~kl~ 79 (126)
T PF09403_consen 14 SISFAATATASVESELNQLEAEYQQLEQKEE---ARYNEEKQEAEAAEAELAEL-----------KELYAEIEEKIEKLK 79 (126)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHcccchHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----------HHHHHhHHHHHHHHH
Confidence 34556655 6777888877776665544443 34556666666777666654 577788888888776
Q ss_pred HHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 003941 295 RLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVA 338 (784)
Q Consensus 295 rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a 338 (784)
.. .=+++=..+-...+...+.....|.++.......+.+++.
T Consensus 80 ~~--~~~r~yk~eYk~llk~y~~~~~~L~k~I~~~e~iI~~fe~ 121 (126)
T PF09403_consen 80 QD--SKVRWYKDEYKELLKKYKDLLNKLDKEIAEQEQIIDNFEK 121 (126)
T ss_dssp HH--GGGSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 4556656556678888888888888888887777776653
No 323
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=43.02 E-value=3.2e+02 Score=26.50 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003941 374 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 374 ~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~ 413 (784)
.+.+++..+.+|...|......++.+.++-+.|+..+.-.
T Consensus 10 s~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L 49 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSL 49 (107)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHH
Confidence 3567888889999988888888888877777777765444
No 324
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=42.93 E-value=6.7e+02 Score=30.17 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHH
Q 003941 380 QSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVL 449 (784)
Q Consensus 380 ~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraL 449 (784)
+....++++|...+.......+++++|+-.+-+.+.-. =+-.|+ ++ ++..+..+++.|+-+
T Consensus 164 ~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~-l~~gE~----e~----L~~e~~rLsn~ekl~ 224 (557)
T COG0497 164 QAWKQARRELEDLQEKERERAQRADLLQFQLEELEELN-LQPGED----EE----LEEERKRLSNSEKLA 224 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCchH----HH----HHHHHHHHhhHHHHH
Confidence 34556677777777777777788888887765554311 112222 33 334456667777733
No 325
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=42.61 E-value=1.2e+02 Score=26.84 Aligned_cols=56 Identities=21% Similarity=0.468 Sum_probs=35.2
Q ss_pred cccchhhHHhhHHhhhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHh
Q 003941 200 KMQGKEKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQR 256 (784)
Q Consensus 200 ~~~~~~~e~~d~le~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k 256 (784)
.+..++..++.|++|-. -+...+..|..-||+||......-..+..+..++.+-.+
T Consensus 6 ~l~EKDe~Ia~L~eEGe-kLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGE-KLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred HHHhHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666777776544 366777788888888887766555555555555444333
No 326
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=42.57 E-value=2.2e+02 Score=24.49 Aligned_cols=38 Identities=13% Similarity=0.275 Sum_probs=25.6
Q ss_pred hhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003941 554 LSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 554 Ls~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 591 (784)
+.+.+..+...+..+..++.+....|..|.++.++...
T Consensus 54 ~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~ 91 (123)
T PF02050_consen 54 ISALEQAIQQQQQELERLEQEVEQAREELQEARRERKK 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666677777777777777777776665
No 327
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=42.20 E-value=79 Score=27.93 Aligned_cols=65 Identities=26% Similarity=0.358 Sum_probs=50.6
Q ss_pred HHHHHhhhHHHHHHHHH---HhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcC
Q 003941 282 MRKELNGKLSELRRLQM---ELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSS 347 (784)
Q Consensus 282 ~~~el~ek~sei~rlq~---~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~ 347 (784)
+.+-|-||-..|..|+. .|+..+- ..+.++..|+..+..++++...|+.....++..+..++..+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el-~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKEL-KLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777778888884 4555332 33468999999999999999999999999999999887653
No 328
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=41.93 E-value=3.8e+02 Score=27.02 Aligned_cols=106 Identities=21% Similarity=0.295 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHH
Q 003941 439 RAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERE 518 (784)
Q Consensus 439 R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~E 518 (784)
+..|..+++++...++....+ ..++......|.++..+...++ .+-+..|+ ..||.....-.+-...+...
T Consensus 36 e~~l~~a~~~~a~~~a~~~~l----e~~~~~~~~~~~~~~~~A~~Al---~~g~edLA--r~al~~k~~~e~~~~~l~~~ 106 (221)
T PF04012_consen 36 EEQLRKARQALARVMANQKRL----ERKLDEAEEEAEKWEKQAELAL---AAGREDLA--REALQRKADLEEQAERLEQQ 106 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH---HcCCHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544322 3344444555555555544443 22222221 12333222222222445555
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHh
Q 003941 519 LALAREESAKLSEYLKNADQRAEVSRSEKEEILVK 553 (784)
Q Consensus 519 La~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~K 553 (784)
+..+...+.+|-..|......+...+.++..+..+
T Consensus 107 ~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar 141 (221)
T PF04012_consen 107 LDQAEAQVEKLKEQLEELEAKLEELKSKREELKAR 141 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666666666666665555555555543
No 329
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=41.38 E-value=5.2e+02 Score=28.47 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=17.0
Q ss_pred HHHHHhhhhhHhhHHHHHHHHH
Q 003941 485 MRTIEAKNVELLNLQTALGQYF 506 (784)
Q Consensus 485 mealeAKnvEl~NLQtALgqfq 506 (784)
+..|++..+.+.=|.+.|+++.
T Consensus 158 l~DLesa~vkV~WLR~~L~Ei~ 179 (269)
T PF05278_consen 158 LKDLESAKVKVDWLRSKLEEIL 179 (269)
T ss_pred HHHHHHcCcchHHHHHHHHHHH
Confidence 3556777888888888888866
No 330
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=41.21 E-value=2.6e+02 Score=24.93 Aligned_cols=71 Identities=25% Similarity=0.274 Sum_probs=0.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003941 371 SFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLK 450 (784)
Q Consensus 371 sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK 450 (784)
+|-..+.+|...+.+-..+..++.|.+.+..+-..|. ...++|+++|+..+..-..|..-|.
T Consensus 2 ~~E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~------------------~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 2 SLELLEQLEEKIQQAVETIALLQMENEELKEKNNELK------------------EENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH
Q 003941 451 QTLAKQEEF 459 (784)
Q Consensus 451 ~~~a~qeel 459 (784)
.-..+.++.
T Consensus 64 ~LL~kl~~v 72 (72)
T PF06005_consen 64 SLLGKLEEV 72 (72)
T ss_dssp HHHHHHH--
T ss_pred HHHHhhhcC
No 331
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=41.16 E-value=9.4e+02 Score=31.33 Aligned_cols=60 Identities=18% Similarity=0.310 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHH
Q 003941 278 EITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEK 342 (784)
Q Consensus 278 ~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~ 342 (784)
++..++.-|.....||++.+.++.. ..+-..-+++.|...+.+...|+.+.++++..+=.
T Consensus 698 ~~~~~k~~l~~~~~El~~~~~~i~~-----~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~ 757 (1141)
T KOG0018|consen 698 DLEQLKRSLEQNELELQRTESEIDE-----FGPEISEIKRKLQNREGEMKELEERMNKVEDRIFK 757 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666777666651 22222378889999999999999999998887654
No 332
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=40.95 E-value=9 Score=44.30 Aligned_cols=111 Identities=22% Similarity=0.380 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHhH--HHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHH-------HH
Q 003941 226 YESQTRQLRMELEQQRNKFADVQLKL--QEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELR-------RL 296 (784)
Q Consensus 226 ~~~~i~~l~~el~~~~~k~~~~~~~l--qee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~-------rl 296 (784)
||.||..|+..|.--+.||.+.+++| ||+ ..++.+++==+.|.= .=+.|++---||-+.|| .+
T Consensus 374 YEqEI~~LkErL~~S~rkLeEyErrLl~QEq-qt~Kll~qyq~RLed-------SE~RLr~QQ~eKd~qmksII~RL~~v 445 (495)
T PF12004_consen 374 YEQEIQSLKERLRMSHRKLEEYERRLLSQEQ-QTQKLLLQYQARLED-------SEERLRRQQEEKDSQMKSIISRLMAV 445 (495)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhhhh-------hHHHHHHHhhhhHHHHHHHHhhhhhh
Confidence 99999999999999999999998887 444 344443322111110 01223333333333333 34
Q ss_pred HHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhh
Q 003941 297 QMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 297 q~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~ 345 (784)
++||-+ |--+-...++.=+++|++-++....|...-..|..+|+++|.
T Consensus 446 EeELrr-e~~~m~~~~~~kqrii~aQ~~~i~~Ldaan~Rl~sal~~lk~ 493 (495)
T PF12004_consen 446 EEELRR-EHAEMQAVLDHKQRIIDAQEKRIAALDAANSRLMSALTQLKE 493 (495)
T ss_dssp -------------------------------------------------
T ss_pred hhhhhh-hHHHHhcccccchHHHHHhhhhcccccccccccccccccccc
Confidence 455543 333344578889999999999999999999999999998864
No 333
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=40.80 E-value=6.6e+02 Score=30.67 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 379 EQSLQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 379 e~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHL 410 (784)
+.++..+..-|+++-.++++..+..++.+.|+
T Consensus 708 ~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~~v 739 (741)
T KOG4460|consen 708 AYQRKCIQSILKELGEHIREMVKQVKDIRNHV 739 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456666778888888999999999999885
No 334
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=40.67 E-value=3.9e+02 Score=30.62 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 382 LQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 382 l~~L~~eL~e~~~E~dKa~kEL~RLRqHL 410 (784)
+..|+++|.++..++.++..++..+...+
T Consensus 73 ~~~l~~~l~~l~~~~~~~~~~~~~~~~~~ 101 (525)
T TIGR02231 73 LAELRKQIRELEAELRDLEDRGDALKALA 101 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777777777777666654
No 335
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=40.53 E-value=5.7e+02 Score=28.63 Aligned_cols=40 Identities=28% Similarity=0.417 Sum_probs=25.0
Q ss_pred CCchhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH
Q 003941 372 FPGKEEMEQSLQKLEKDLKET-CSERDKALQELTRLKQHLI 411 (784)
Q Consensus 372 f~~kEeme~sl~~L~~eL~e~-~~E~dKa~kEL~RLRqHLL 411 (784)
.|...++.+.+..+..-|..+ ..-.....+.|.+|+++|.
T Consensus 259 ~~~~~e~~q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~ 299 (438)
T PRK00286 259 VPDRAELLQRLQQLQQRLARAMRRRLEQKRQRLDQLARRLK 299 (438)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456667767777666666433 3445666677777777754
No 336
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=40.29 E-value=2.2e+02 Score=28.30 Aligned_cols=57 Identities=23% Similarity=0.326 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHH
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLK 390 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~ 390 (784)
.+...|..+..+..++.+|+.+.......|+.++.+ .. ..|+|...++.|+.+.+
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~------------------~~-------d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLKKS------------------AK-------DNEELKKQIEELQAKNK 68 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------------cC-------CHHHHHHHHHHHHHHHH
Confidence 345577788888889999999999999999999764 11 37788777777777766
Q ss_pred Hh
Q 003941 391 ET 392 (784)
Q Consensus 391 e~ 392 (784)
..
T Consensus 69 ~~ 70 (155)
T PF06810_consen 69 TA 70 (155)
T ss_pred HH
Confidence 55
No 337
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=39.97 E-value=3.2e+02 Score=32.80 Aligned_cols=117 Identities=17% Similarity=0.194 Sum_probs=0.0
Q ss_pred hHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHH
Q 003941 218 SLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQ 297 (784)
Q Consensus 218 ~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq 297 (784)
.+...+..-..-+.-|..+|..-+.++...+..|++=++.|..+ |-.......-.--.+|+.++++++...
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~---------d~~~ea~~~l~~~~~l~~ql~~l~~~~ 327 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSV---------DLNLEAKAVLEQIVNVDNQLNELTFRE 327 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhh
Q 003941 298 MELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (784)
Q Consensus 298 ~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (784)
.+|..+- .+.+..|..|+..+.+|+++...++.+...+-..-..++
T Consensus 328 ~~l~~~~-~~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~ 373 (726)
T PRK09841 328 AEISQLY-KKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVL 373 (726)
T ss_pred HHHHHHh-cccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
No 338
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=39.79 E-value=4.8e+02 Score=27.60 Aligned_cols=40 Identities=20% Similarity=0.374 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCC
Q 003941 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFP 353 (784)
Q Consensus 314 sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~ 353 (784)
.+...+..+..+...|+.++..++..+...+........+
T Consensus 132 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g 171 (301)
T PF14362_consen 132 SFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFG 171 (301)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3444444444445555555555555555554444444443
No 339
>PF14992 TMCO5: TMCO5 family
Probab=39.73 E-value=5.7e+02 Score=28.37 Aligned_cols=75 Identities=24% Similarity=0.361 Sum_probs=38.6
Q ss_pred hhcccCccchhhHH----HHHHHHHhhhHHHHHHHHHHhccccc-----CCcchH-------HHHHHHHHHHHHHhhhhh
Q 003941 266 KSLKMDKDKTSIEI----TEMRKELNGKLSELRRLQMELNRRED-----GDANDV-------VENLKRVVATLEKENNSL 329 (784)
Q Consensus 266 ~~lk~~~~kts~~~----~~~~~el~ek~sei~rlq~~l~~~e~-----e~~~~~-------~~sLk~~~~~L~kEn~tl 329 (784)
.+|.||-+|---.+ +.+-.-.++|...|.+|.-|++.-.. ++-+.. +..|....+.|+++|..+
T Consensus 3 ~sLn~dle~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~~~~~~~e~e~~~~~~~e~~l~~le~e~~~LE~~ne~l 82 (280)
T PF14992_consen 3 MSLNMDLEKDEQRLDEANQSLLQKIQEKEGAIQSLEREITKMDHIADRSEEEDIISEERETDLQELELETAKLEKENEHL 82 (280)
T ss_pred chhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhHHhhhhhchHHHHHHHHhhhHHHhhhhHhh
Confidence 45555555433222 23334467788889999888875221 111212 233344445555555555
Q ss_pred HhhHHHHHHHH
Q 003941 330 KMEKTELVAAL 340 (784)
Q Consensus 330 k~~~~eL~a~L 340 (784)
...+.+|-.++
T Consensus 83 ~~~~~elq~k~ 93 (280)
T PF14992_consen 83 SKSVQELQRKQ 93 (280)
T ss_pred hhhhhhhhhhh
Confidence 55555554443
No 340
>PRK03963 V-type ATP synthase subunit E; Provisional
Probab=38.97 E-value=4e+02 Score=26.41 Aligned_cols=45 Identities=16% Similarity=0.170 Sum_probs=32.3
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHhc
Q 003941 567 RANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQR 615 (784)
Q Consensus 567 ~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~R 615 (784)
+..++..-..-+...|+.+..+|..++.+ .|. -++.+|+...+..
T Consensus 72 r~~~l~ar~el~~~v~~~a~~~l~~~~~~--~Y~--~~l~~li~~a~~~ 116 (198)
T PRK03963 72 RRKRLAVQEELISEVLEAVRERLAELPED--EYF--ETLKALTKEAVEE 116 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hHH--HHHHHHHHHHHHH
Confidence 44455566677888999999999887743 344 5888888876653
No 341
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=37.98 E-value=1.1e+02 Score=28.65 Aligned_cols=62 Identities=24% Similarity=0.318 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHhcCCch---HHHHHHHHhcCCCHHHHHHhhh
Q 003941 580 LAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQRNHSK---EVLDLMVRMLGFSDEDKQRIGM 641 (784)
Q Consensus 580 ~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~R~~sK---EVL~LMArMLgFSDEEK~riGL 641 (784)
|||++-..+|.+-=...++.+--+.+-+-|+.||+-.... +||+||-+.+-.......-.++
T Consensus 6 RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~a~~~l~~i 70 (98)
T PF14726_consen 6 RALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPYAAQILRDI 70 (98)
T ss_pred HHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcHHHHHHHHc
Confidence 5899999999665556677775666666678899944443 8999999988776655554444
No 342
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=37.95 E-value=2.2e+02 Score=33.76 Aligned_cols=40 Identities=23% Similarity=0.369 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhh
Q 003941 228 SQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKS 267 (784)
Q Consensus 228 ~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~ 267 (784)
+|-.+|++++-.||+--..+.+.|++|+|+-..+|..|+.
T Consensus 528 ~Ek~ELkmd~lrerelreslekql~~ErklR~~~qkr~kk 567 (641)
T KOG3915|consen 528 LEKTELKMDFLRERELRESLEKQLAMERKLRAIVQKRLKK 567 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557899999999999999999999999999999987764
No 343
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=37.94 E-value=4.9e+02 Score=27.18 Aligned_cols=58 Identities=22% Similarity=0.187 Sum_probs=33.3
Q ss_pred HHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhh
Q 003941 282 MRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (784)
Q Consensus 282 ~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (784)
+.--+....+.|..+..+|.+.... +..-+..+..++++..+|......|..+.+.+.
T Consensus 15 ~~~~~~~l~~~~e~~~~~L~~~~~~-----~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~ 72 (264)
T PF06008_consen 15 AWPAPYKLLSSIEDLTNQLRSYRSK-----LNPQKQQLDPLEKELESLEQDVENLQEKATKVS 72 (264)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566677777777664432 233445555666666666666666666665553
No 344
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=37.93 E-value=6.9e+02 Score=28.88 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=14.7
Q ss_pred HHHHHHHhcCCCHHHHHHhhhcccCCCCCcccccc
Q 003941 621 VLDLMVRMLGFSDEDKQRIGMAQQGAGKGVVRGVL 655 (784)
Q Consensus 621 VL~LMArMLgFSDEEK~riGL~~q~~g~G~~rgv~ 655 (784)
..+|..+.-...++=|.. -|-. .+|+|++..++
T Consensus 468 ~~~L~~rf~~v~~~~r~~-~l~~-~~~~g~~~~~~ 500 (582)
T PF09731_consen 468 EAQLRNRFERVAPEVRRA-SLVP-PEGAGLLGHLL 500 (582)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcC-CCCCCHHHHHH
Confidence 455666644443333333 3331 23456655443
No 345
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=37.70 E-value=6.4e+02 Score=28.38 Aligned_cols=200 Identities=21% Similarity=0.299 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHH----HH----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 003941 393 CSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEEL----RE----NNEYQRAQILHLENVLKQTLAKQEEFKMMNH 464 (784)
Q Consensus 393 ~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeEL----re----enE~~R~~Is~lEraLK~~~a~qeelk~~n~ 464 (784)
+.|+..+..||+++|.+=.++|. ++-+|.+++-|- +- .-|.+...|.++-..|..-+| ++.|+++
T Consensus 5 q~eia~LrlEidtik~q~qekE~----ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~a---ENt~L~S 77 (305)
T PF14915_consen 5 QDEIAMLRLEIDTIKNQNQEKEK----KYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKA---ENTMLNS 77 (305)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH---HHHHHhH
Confidence 45677788888888888666653 555554444441 11 112233333333333333322 2233332
Q ss_pred H------HHHhhHHHHHhhhhhHHHhHHHHHhh-----hhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 003941 465 S------EIQKSKEIIDGLNNKLANCMRTIEAK-----NVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYL 533 (784)
Q Consensus 465 ~------E~~~ske~iedL~~~L~~~mealeAK-----nvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~L 533 (784)
. --..+..+|+-..-+|++.+...+.. |.|++ +|.+-++++-=+ +.+-.++..++..+.-|++.|
T Consensus 78 kLe~EKq~kerLEtEiES~rsRLaaAi~d~dqsq~skrdlela-fqr~rdEw~~lq---dkmn~d~S~lkd~ne~LsQqL 153 (305)
T PF14915_consen 78 KLEKEKQNKERLETEIESYRSRLAAAIQDHDQSQTSKRDLELA-FQRARDEWVRLQ---DKMNSDVSNLKDNNEILSQQL 153 (305)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHH-HHHHhhHHHHHH---HHhcchHHhHHHHhHHHHHHH
Confidence 1 11234445555555566554443332 33322 233333222222 334555666666666677777
Q ss_pred HHhhhHHHH----------hhhhHHHHHH----hhhHHHHHHHhhh---------------------hhhhhhHHhHHHH
Q 003941 534 KNADQRAEV----------SRSEKEEILV----KLSHSEKMLAEGK---------------------GRANKLEEDNAKL 578 (784)
Q Consensus 534 k~a~q~ie~----------~~kEKeei~~----KLs~~E~~l~e~K---------------------~~~~KL~eDn~kL 578 (784)
..|...+.. +.+||.-++. .|+|++-...+++ .++.-|..+|.-|
T Consensus 154 skaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LL 233 (305)
T PF14915_consen 154 SKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLL 233 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666533 2556654442 3455544443333 2444466677777
Q ss_pred HHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHH
Q 003941 579 RLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTY 612 (784)
Q Consensus 579 R~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTY 612 (784)
|.-|+.|-.+... -.++|+++=..|
T Consensus 234 rQQLddA~~K~~~---------kek~ViniQ~~f 258 (305)
T PF14915_consen 234 RQQLDDAHNKADN---------KEKTVINIQDQF 258 (305)
T ss_pred HHHHHHHHHHHHH---------HHHHHhhHHHHH
Confidence 7777666553211 134777776555
No 346
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=37.64 E-value=43 Score=30.46 Aligned_cols=36 Identities=31% Similarity=0.426 Sum_probs=28.4
Q ss_pred HHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCC
Q 003941 319 VATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDAS 356 (784)
Q Consensus 319 ~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~ 356 (784)
|..+.+||..||+++..|++.|..++.. -+|..|..
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~~--~qIk~diP 37 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKRE--FQIKEDIP 37 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhccCCc
Confidence 6678999999999999999999998776 34444433
No 347
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.58 E-value=1.9e+02 Score=32.73 Aligned_cols=85 Identities=20% Similarity=0.247 Sum_probs=61.9
Q ss_pred HHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHH
Q 003941 263 DELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEK 342 (784)
Q Consensus 263 e~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~ 342 (784)
+++-.|--.+-+...+++.++.|-|.--.+|..+. . ..++ ..+.|+.....|+++...|+.+..++++++..
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~----~-~~~~---~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAK----G-QKKD---KIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----c-cCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455566777777777777777776522 1 1111 15678888888899999999999999999999
Q ss_pred hhhcCCCccCCCC
Q 003941 343 NRKSSNEKIFPDA 355 (784)
Q Consensus 343 ~r~t~~~k~~~da 355 (784)
.-..+|+-+.||.
T Consensus 102 ~~~~lPN~~~~~v 114 (418)
T TIGR00414 102 KLLSIPNIPHESV 114 (418)
T ss_pred HHHhCCCCCCccC
Confidence 9999999988886
No 348
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=36.69 E-value=6e+02 Score=28.20 Aligned_cols=80 Identities=19% Similarity=0.202 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHH
Q 003941 442 ILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELAL 521 (784)
Q Consensus 442 Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~ 521 (784)
+..+|...+++|..+..| ++|-..+-=+|+-||.+|...-+++-..+.++.....+| -....+-..|..++..
T Consensus 86 l~evEekyrkAMv~naQL----DNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~el---Er~K~~~d~L~~e~~~ 158 (302)
T PF09738_consen 86 LAEVEEKYRKAMVSNAQL----DNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIREL---ERQKRAHDSLREELDE 158 (302)
T ss_pred HHHHHHHHHHHHHHHhhh----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 344555566666654443 455555666677777666665666666555554444333 2233333334444444
Q ss_pred HHHHHHH
Q 003941 522 AREESAK 528 (784)
Q Consensus 522 aree~a~ 528 (784)
+++.+..
T Consensus 159 Lre~L~~ 165 (302)
T PF09738_consen 159 LREQLKQ 165 (302)
T ss_pred HHHHHHH
Confidence 4444443
No 349
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=36.52 E-value=3.4e+02 Score=24.90 Aligned_cols=22 Identities=32% Similarity=0.270 Sum_probs=9.3
Q ss_pred HHHHHHHhhhhhhhhhHHhHHH
Q 003941 556 HSEKMLAEGKGRANKLEEDNAK 577 (784)
Q Consensus 556 ~~E~~l~e~K~~~~KL~eDn~k 577 (784)
.....+..++..+.++.+.+..
T Consensus 85 ~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 85 KLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 350
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=36.33 E-value=4.3e+02 Score=28.59 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchH
Q 003941 228 SQTRQLRMELEQQRNKFADVQLKLQEEQRLNES 260 (784)
Q Consensus 228 ~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~ 260 (784)
..+.-+..+|.+-+.++...+.+|++=+..|..
T Consensus 170 ~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~ 202 (362)
T TIGR01010 170 DTIAFAENEVKEAEQRLNATKAELLKYQIKNKV 202 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 445667777777778888888777765555543
No 351
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=35.39 E-value=4.4e+02 Score=25.88 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=29.6
Q ss_pred CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 003941 373 PGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 373 ~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~ 415 (784)
|.-.++--.++.|...|...-..+.+...+|.-....|-+.+.
T Consensus 6 p~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~ 48 (119)
T COG1382 6 PEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEK 48 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455566667777888887777777777777776666655543
No 352
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=35.38 E-value=6.3e+02 Score=27.64 Aligned_cols=150 Identities=21% Similarity=0.268 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003941 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLA 454 (784)
Q Consensus 375 kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a 454 (784)
+|.++..+..|+..+....+.+.++..||.-|+-| |+-|=-.|.=-=..+...|-+.-+.+..++..|..-++..++
T Consensus 76 eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TY---kD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~~el~ 152 (258)
T PF15397_consen 76 EEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTY---KDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQMELA 152 (258)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhhchHHHHhhHHHHHhhhhhHHH-----hHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 003941 455 KQEEFKMMNHSEIQKSKEIIDGLNNKLAN-----CMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKL 529 (784)
Q Consensus 455 ~qeelk~~n~~E~~~ske~iedL~~~L~~-----~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~L 529 (784)
... .+....-+.+...++. |=.++-.+-.+..=++.-+..|--++ ..|+.++..++.++-.|
T Consensus 153 ~l~----------~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i---~el~e~I~~L~~eV~~L 219 (258)
T PF15397_consen 153 SLS----------RKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEI---DELEEEIPQLRAEVEQL 219 (258)
T ss_pred HHH----------HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhHH
Q 003941 530 SEYLKNADQRA 540 (784)
Q Consensus 530 s~~Lk~a~q~i 540 (784)
......-...|
T Consensus 220 ~~~~~~~Re~i 230 (258)
T PF15397_consen 220 QAQAQDPREVI 230 (258)
T ss_pred HHhhcchHHHh
No 353
>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.
Probab=35.33 E-value=4.2e+02 Score=25.63 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=37.3
Q ss_pred hHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHH
Q 003941 571 LEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQR 638 (784)
Q Consensus 571 L~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~R~~sKEVL~LMArMLgFSDEEK~r 638 (784)
|..-..-+...++.+..+|+.++.+.|.|. .++.+|+...+..-..+++ ++-+++.+...
T Consensus 67 l~~k~~~i~~v~~~~~~~L~~~~~~~~~Y~--~~L~~li~~~~~~~~~~~~------~v~~~~~D~~~ 126 (198)
T PF01991_consen 67 LEAKQEIIDEVFEEVKEKLKSFSKDPDDYK--KFLKKLIEEAAEKLGEGEV------IVYVNKKDLEL 126 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCCC-THH--HHHHHHHHHHHHCCTTSCE------EEEECCHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHH--HHHHHHHHHHHHHhcCCce------EEecccchHHH
Confidence 444455567788889999999886663343 6777777777664444333 33455555543
No 354
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=35.27 E-value=4.5e+02 Score=25.96 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHHH
Q 003941 600 VDRRIVIKLLVTYF 613 (784)
Q Consensus 600 VDRRIVtkLLLTYf 613 (784)
||++--..|+-.|+
T Consensus 142 ~~~~~~~~lid~~~ 155 (161)
T COG0711 142 VDEAAQKDLIDAFI 155 (161)
T ss_pred hhHHHHHHHHHHHH
Confidence 44444444444443
No 355
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=35.02 E-value=3e+02 Score=28.51 Aligned_cols=83 Identities=24% Similarity=0.266 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHH
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKE 391 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e 391 (784)
+..|..++..|+++...++.++.+++..=+......+.+ ...|+..-..+-....+
T Consensus 138 n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~------------------------L~~Le~~W~~~v~kn~e 193 (221)
T PF05700_consen 138 NEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEE------------------------LRYLEQRWKELVSKNLE 193 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------------------------HHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 003941 392 TCSERDKALQELTRLKQHLIEKAQEES 418 (784)
Q Consensus 392 ~~~E~dKa~kEL~RLRqHLLe~E~Ee~ 418 (784)
...+...+.+|+.+||+.....+...+
T Consensus 194 ie~a~~~Le~ei~~l~~~~~~~~~~~~ 220 (221)
T PF05700_consen 194 IEVACEELEQEIEQLKRKAAELKENQQ 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccc
No 356
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=35.01 E-value=78 Score=26.48 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhh
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (784)
.++.|...+..|..+|..|+.++..|...+..++
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555556666666666666666655555543
No 357
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=34.95 E-value=3e+02 Score=28.02 Aligned_cols=26 Identities=23% Similarity=0.466 Sum_probs=10.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003941 384 KLEKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 384 ~L~~eL~e~~~E~dKa~kEL~RLRqH 409 (784)
.+...+.++..+...+..++..|+.+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~ 149 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNK 149 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444433444444444444444
No 358
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=34.86 E-value=3.8e+02 Score=31.82 Aligned_cols=47 Identities=28% Similarity=0.267 Sum_probs=25.2
Q ss_pred hHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHH
Q 003941 464 HSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIE 510 (784)
Q Consensus 464 ~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~E 510 (784)
-.+++.+++++++|++...+.-..+..-..++.+....+.+=+++.+
T Consensus 211 p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk 257 (555)
T TIGR03545 211 PLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELK 257 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34666666666666666655555555544444444444444444443
No 359
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.62 E-value=1e+03 Score=29.85 Aligned_cols=13 Identities=8% Similarity=0.204 Sum_probs=6.6
Q ss_pred HHHHHHHhcCCch
Q 003941 607 KLLVTYFQRNHSK 619 (784)
Q Consensus 607 kLLLTYf~R~~sK 619 (784)
+.|-.|+.+.--.
T Consensus 891 ~~~~~~~~~~~~~ 903 (1042)
T TIGR00618 891 DALIKFLHEITLY 903 (1042)
T ss_pred hhHHHHHHHHHHH
Confidence 4555666644333
No 360
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=34.10 E-value=3.6e+02 Score=25.51 Aligned_cols=78 Identities=24% Similarity=0.373 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHH
Q 003941 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDL 389 (784)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL 389 (784)
+....|+...+..+++..++..++..+...|...+.+.+.. .....+..++.+..+|
T Consensus 36 ~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~-----------------------~~~~~~~~l~~~~~~l 92 (158)
T PF03938_consen 36 DAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEE-----------------------ERQKRQQELQQKEQEL 92 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSH-----------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchh-----------------------HHHHHHHHHHHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 003941 390 KETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 390 ~e~~~E~dKa~kEL~RLRqHLLe~ 413 (784)
... ...+.++|..-++.++..
T Consensus 93 ~~~---~~~~~~~l~~~~~~~~~~ 113 (158)
T PF03938_consen 93 QQF---QQQAQQQLQQEEQELLQP 113 (158)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHHHH
No 361
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.59 E-value=1e+03 Score=29.47 Aligned_cols=93 Identities=29% Similarity=0.345 Sum_probs=53.9
Q ss_pred HHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCc
Q 003941 295 RLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPG 374 (784)
Q Consensus 295 rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~ 374 (784)
++||++-. --|+.|++-++.++++|+-|-..+-+|+++-..- -+++. ..|.+-|.-
T Consensus 331 ~~Q~~~~~-------~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~~R~----------~~s~A-------~~K~~E~K~ 386 (852)
T KOG4787|consen 331 HLQLELAE-------SQVQHLNTKIERLEKTNDHLNKKIVELEADCKRG----------GVTSA-------HSKAGEFKL 386 (852)
T ss_pred HHHHHHHH-------HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhccc----------chHHH-------HHHhhhhhc
Confidence 56666643 3477888889999999877766666666543221 11111 123333333
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 003941 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 375 kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~ 415 (784)
.=+|+..+.. +.-+..+..+..-++.-||..|-.++.
T Consensus 387 ~~~~~~~~~r----~i~~~~~~~~~~~~~s~~~r~L~~~~~ 423 (852)
T KOG4787|consen 387 TPEMEKDMSK----MIVTISELERKNLELTTQVKQLETKVT 423 (852)
T ss_pred ChHhHhHHHH----HHHHHHHHHHhcccHHHHHHHHhhccc
Confidence 3355554544 333444555666778888888766654
No 362
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=33.32 E-value=1.9e+02 Score=31.56 Aligned_cols=44 Identities=32% Similarity=0.406 Sum_probs=36.7
Q ss_pred HHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHH
Q 003941 539 RAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAV 582 (784)
Q Consensus 539 ~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~AL 582 (784)
..+...+||++++..|...+..+.+++.++..|+.+++.|.+-|
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~ 186 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEML 186 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556688888988888899999999999999999999887755
No 363
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=33.29 E-value=6.9e+02 Score=30.75 Aligned_cols=47 Identities=19% Similarity=0.295 Sum_probs=24.9
Q ss_pred ChhHHHHHHHHHHHhhhHH-hHhHhhhhHHHHhhhhHHHhhhhhcccc
Q 003941 70 DPEIERYKAEIKRLQESEA-EIKALSVNYAALLKEKEEQISRLNGEYG 116 (784)
Q Consensus 70 ~~eie~ykaei~~lq~sea-eikals~nyaallkekedqi~rl~~eng 116 (784)
|.++..+..+|..|..-+. ++..+=..+...+....+.|..+..--|
T Consensus 226 p~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~ 273 (782)
T PRK00409 226 PQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFD 273 (782)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457777777766654433 3333334455555555555555444333
No 364
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=33.20 E-value=3.6e+02 Score=26.50 Aligned_cols=77 Identities=19% Similarity=0.353 Sum_probs=61.2
Q ss_pred HhhHHhhhchhHHHHHHHhHHHHHHHHHHHHHhhhh----hhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHH
Q 003941 208 LADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNK----FADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMR 283 (784)
Q Consensus 208 ~~d~le~~~~~~aa~qa~~~~~i~~l~~el~~~~~k----~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~ 283 (784)
|.||.==-+|+|+-+-+....++.++-..|..-+++ +.++-.+|++-..+.+.+++++..++-|-+.+-.++..+|
T Consensus 30 ~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~ 109 (126)
T PF07889_consen 30 FSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQ 109 (126)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 677877788888888888888888887777766654 5677788888888999999998888877777777777666
Q ss_pred H
Q 003941 284 K 284 (784)
Q Consensus 284 ~ 284 (784)
.
T Consensus 110 ~ 110 (126)
T PF07889_consen 110 Q 110 (126)
T ss_pred H
Confidence 5
No 365
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=33.19 E-value=5.2e+02 Score=26.05 Aligned_cols=38 Identities=16% Similarity=0.268 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003941 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 377 eme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 414 (784)
+|+..+..++..+........++.+++..+..-.-.++
T Consensus 34 d~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~ 71 (221)
T PF04012_consen 34 DMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWE 71 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555554444443
No 366
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=33.17 E-value=67 Score=26.33 Aligned_cols=29 Identities=38% Similarity=0.478 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHH
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAAL 340 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L 340 (784)
-++|+....+|.+||..|..++..|-..|
T Consensus 14 yd~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 14 YDSLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666666666665554
No 367
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=33.01 E-value=1.4e+02 Score=27.78 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=15.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 003941 387 KDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 387 ~eL~e~~~E~dKa~kEL~RLRqH 409 (784)
+|+.+...-..+..+||+.||+|
T Consensus 43 ~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 43 KELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHHhhccHHHHHHHHHh
Confidence 44455555567778888888874
No 368
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=32.60 E-value=3.4e+02 Score=23.78 Aligned_cols=58 Identities=7% Similarity=0.197 Sum_probs=25.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhH
Q 003941 428 IEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCM 485 (784)
Q Consensus 428 IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~m 485 (784)
+..++..++++...+..++..+..-..+.+..+.-...+...+...+++.+..|...+
T Consensus 9 l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l 66 (127)
T smart00502 9 LTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDL 66 (127)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555554444433233333333333444444444444444444433
No 369
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=32.19 E-value=8.9e+02 Score=28.46 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHhcCCCHHH
Q 003941 603 RIVIKLLVTYFQRNHSKEVLDLMVRMLGFSDED 635 (784)
Q Consensus 603 RIVtkLLLTYf~R~~sKEVL~LMArMLgFSDEE 635 (784)
+...+++++=++|--+.-+-+--+++..+-.+|
T Consensus 182 ~~a~~i~~~aiqr~a~~~~~e~~~~~v~lp~d~ 214 (514)
T TIGR03319 182 KKAKEILATAIQRYAGDHVAETTVSVVNLPNDE 214 (514)
T ss_pred HHHHHHHHHHHHhccchhhhhheeeeEEcCChh
Confidence 345667777888777776666666666654443
No 370
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=31.76 E-value=1.9e+02 Score=31.53 Aligned_cols=78 Identities=26% Similarity=0.365 Sum_probs=46.2
Q ss_pred HHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHH
Q 003941 236 ELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENL 315 (784)
Q Consensus 236 el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sL 315 (784)
++..-++-..+++-||+|.++-|+-+.++|.. +..|+++-...|++|.-+++ +|
T Consensus 129 ~~~d~ke~~ee~kekl~E~~~EkeeL~~elee--------------le~e~ee~~erlk~le~E~s------------~L 182 (290)
T COG4026 129 EYMDLKEDYEELKEKLEELQKEKEELLKELEE--------------LEAEYEEVQERLKRLEVENS------------RL 182 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHH------------HH
Confidence 34444555667778888888888776665543 33444444445555555543 34
Q ss_pred HHHHHHHHHhhhhhHhhHHHHHHH
Q 003941 316 KRVVATLEKENNSLKMEKTELVAA 339 (784)
Q Consensus 316 k~~~~~L~kEn~tlk~~~~eL~a~ 339 (784)
-.++..|.-+-..|+....+|+..
T Consensus 183 eE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 183 EEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHhchhHHHHHHHHHHHhccc
Confidence 555555555666666666666555
No 371
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=31.55 E-value=6.4e+02 Score=29.26 Aligned_cols=72 Identities=19% Similarity=0.252 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHH
Q 003941 315 LKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCS 394 (784)
Q Consensus 315 Lk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~ 394 (784)
+-+--..|..+-..|-.....|.--++.+|+--..+ + .=|..-. |+.+.++|..+..
T Consensus 204 ~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~R----------g---------vRp~~~q----le~v~kdi~~a~~ 260 (424)
T PF03915_consen 204 MESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQR----------G---------VRPSPKQ----LETVAKDISRASK 260 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------C---------CcCCHHH----HHHHHHHHHHHHH
Confidence 333444455555666666666666666665431111 1 1122223 4555556665555
Q ss_pred HHHHHHHHHHHHHHH
Q 003941 395 ERDKALQELTRLKQH 409 (784)
Q Consensus 395 E~dKa~kEL~RLRqH 409 (784)
+..++..-+.++|.+
T Consensus 261 ~L~~m~~~i~~~kp~ 275 (424)
T PF03915_consen 261 ELKKMKEYIKTEKPI 275 (424)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHH
Confidence 555555555555555
No 372
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=31.45 E-value=2e+02 Score=33.93 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHh
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~ 343 (784)
.++.|+..+..|+.+.......+..|-..|..+
T Consensus 208 ~l~~L~~~~~~L~~~k~~r~~~~~~l~~~i~~L 240 (619)
T PF03999_consen 208 NLEKLQELLQELEEEKEEREEKLQELREKIEEL 240 (619)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666666666555
No 373
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=31.29 E-value=5.3e+02 Score=25.57 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=7.0
Q ss_pred HHHHhhhhhHHHhHHH
Q 003941 472 EIIDGLNNKLANCMRT 487 (784)
Q Consensus 472 e~iedL~~~L~~~mea 487 (784)
..++.+.+++.+.+..
T Consensus 49 ~~l~~R~~~I~~~l~~ 64 (167)
T PRK08475 49 NFYKSRINKISKRLEE 64 (167)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 374
>PRK14127 cell division protein GpsB; Provisional
Probab=31.13 E-value=2.1e+02 Score=27.49 Aligned_cols=47 Identities=15% Similarity=0.290 Sum_probs=38.8
Q ss_pred cccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcC
Q 003941 301 NRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSS 347 (784)
Q Consensus 301 ~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~ 347 (784)
-|-..+++++-++.+-..+++|.+||..|+.+...|+.+|..++...
T Consensus 21 RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~ 67 (109)
T PRK14127 21 RGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQV 67 (109)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35556667778888888889999999999999999999999887753
No 375
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=31.08 E-value=3.7e+02 Score=24.09 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=23.4
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003941 423 EDSKIIEELRENNEYQRAQILHLENVLKQ 451 (784)
Q Consensus 423 ed~k~IeELreenE~~R~~Is~lEraLK~ 451 (784)
+.+..|+.|+-+|=..+-.|-.||..|.+
T Consensus 4 Eqe~~i~~L~KENF~LKLrI~fLee~l~~ 32 (75)
T PF07989_consen 4 EQEEQIDKLKKENFNLKLRIYFLEERLQK 32 (75)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 44567888988888889999998888874
No 376
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=30.51 E-value=7e+02 Score=26.69 Aligned_cols=80 Identities=23% Similarity=0.283 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhcc
Q 003941 514 HLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMS 593 (784)
Q Consensus 514 rLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms 593 (784)
.|+.+++.+...+-.|++.=-.+.+..+....+-..+..||..++....-+-.++.||......|-.-|...--.+..|+
T Consensus 113 eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~ 192 (205)
T KOG1003|consen 113 ELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAK 192 (205)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHH
Confidence 45555555555555555444445555454444444456688888887776678899999888888887777777666655
No 377
>PTZ00234 variable surface protein Vir12; Provisional
Probab=30.50 E-value=58 Score=37.34 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=10.9
Q ss_pred ccccccCCCCCCcc
Q 003941 764 STVPLSSSKSNSRL 777 (784)
Q Consensus 764 stvpltss~~~~~~ 777 (784)
++||++..++++++
T Consensus 339 ~~~~~~~~~~~~~l 352 (433)
T PTZ00234 339 PTAPEVNPDTSNFL 352 (433)
T ss_pred CCCCcCCCCCCchh
Confidence 55999988887765
No 378
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=30.44 E-value=6.1e+02 Score=26.02 Aligned_cols=30 Identities=17% Similarity=0.276 Sum_probs=18.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003941 383 QKLEKDLKETCSERDKALQELTRLKQHLIE 412 (784)
Q Consensus 383 ~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe 412 (784)
.-|+..|..++...+.+..||.+|++-+--
T Consensus 84 ~lLReQLEq~~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 84 ALLREQLEQARKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336666666666666666666666665443
No 379
>PF05461 ApoL: Apolipoprotein L; InterPro: IPR008405 Apo L belongs to the high density lipoprotein family that plays a central role in cholesterol transport. The cholesterol content of membranes is important in cellular processes such as modulating gene transcription and signal transduction both in the adult brain and during neurodevelopment. There are six apo L genes located in close proximity to each other on chromosome 22q12 in humans. 22q12 is a confirmed high-susceptibility locus for schizophrenia and close to the region associated with velocardiofacial syndrome that includes symptoms of schizophrenia []. The various functions of apoL are still not entirely clear. Apolipoprotein L-I has been identified as a trypanolytic agent [] and displays similar phylogenetic distribution to the programmed cell death protein Bcl-2 and BH-3 domain-containing proteins, suggesting a possible role in apoptosis [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region
Probab=30.38 E-value=5.4e+02 Score=28.48 Aligned_cols=81 Identities=26% Similarity=0.326 Sum_probs=35.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHH
Q 003941 508 EIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMT 587 (784)
Q Consensus 508 E~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~ 587 (784)
|-||-+++..+...-|+|...|-+.|+.-...... .+++..-....+.+.-+.++-..-.+|++.+.+||. |..-+.
T Consensus 13 ~~eaw~~~~~~~~l~rde~d~l~~~L~~l~~~~~~--~d~~~~~~~~~~~~~FL~~Fp~~k~~Le~~I~kL~~-lAd~id 89 (313)
T PF05461_consen 13 EDEAWERFVAEAELSRDEADALREALKELTEDMDS--EDKDRSQKDQQDRERFLKEFPQLKEELEEHIRKLRA-LADEID 89 (313)
T ss_pred hHHHHHHHHHhccCchhhHHHHHHHHHHHHhhhhc--cccchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34455555555555566666655555543332211 111111111223444455554444445555555542 333334
Q ss_pred HHhh
Q 003941 588 RLNR 591 (784)
Q Consensus 588 RL~~ 591 (784)
+.++
T Consensus 90 k~Hk 93 (313)
T PF05461_consen 90 KVHK 93 (313)
T ss_pred HHHH
Confidence 4443
No 380
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=30.27 E-value=1e+02 Score=25.72 Aligned_cols=34 Identities=32% Similarity=0.424 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhh
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~ 345 (784)
..+++..+..|+++...++.+...|...+..+++
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556666667777777777777777777666633
No 381
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=30.20 E-value=9.5e+02 Score=28.14 Aligned_cols=154 Identities=19% Similarity=0.254 Sum_probs=77.4
Q ss_pred HHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH-----------
Q 003941 474 IDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEV----------- 542 (784)
Q Consensus 474 iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~----------- 542 (784)
|+++.+++...++.+..+..+..| .|.+-.+ ..+|+.+.+.-...+.+..|..+.++-.
T Consensus 134 ~~~~~~~~~~~~q~lq~~~~~~er-------~~~~y~~---~~qElq~k~t~~~afn~tikife~q~~~~e~~~ka~~d~ 203 (464)
T KOG4637|consen 134 INAVGKKLREYHQQLQEKSLEYER-------LYEEYTR---TSQELQMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDR 203 (464)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhH
Confidence 566666666666555444443333 3333322 2566666666655555555555444311
Q ss_pred ----------hhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHH-HH------H-hhccCCcchhhhHHH
Q 003941 543 ----------SRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSM-TR------L-NRMSVDSDFLVDRRI 604 (784)
Q Consensus 543 ----------~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl-~R------L-~~ms~dsD~~VDRRI 604 (784)
..+|+..|+.-....+..+.+++....+|+++.-+|-.++-..+ .| | +.|-.=-...+-=|.
T Consensus 204 ~~~eqG~qg~~e~~~~~~a~N~~~~ks~i~ei~~sl~~l~d~lk~~~q~~~~~~enr~~e~m~l~k~~nslkp~l~~lr~ 283 (464)
T KOG4637|consen 204 FRREQGSQGNSEKEIGRIANNYDKLKSRIREIHDSLTRLEDDLKALIQALRSNSENRLCELMELDKAMNSLKPDLIQLRK 283 (464)
T ss_pred HHHHhccCCchHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcCchHHHHHH
Confidence 12333334443334555566777667777777665544441111 11 1 001000111333344
Q ss_pred HHHHHHHHHhcCCch-HHHHHHHH-hcCCCHHHHH
Q 003941 605 VIKLLVTYFQRNHSK-EVLDLMVR-MLGFSDEDKQ 637 (784)
Q Consensus 605 VtkLLLTYf~R~~sK-EVL~LMAr-MLgFSDEEK~ 637 (784)
....-+-|+.-..-+ .+|+++.. .+-|+|++-.
T Consensus 284 ~~d~y~~~l~~~~~~~k~l~~~l~~~~~~t~~qy~ 318 (464)
T KOG4637|consen 284 IRDQYLVWLMIKGVRQKVLNLWLGMENEWTDAQYL 318 (464)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHhhhhcCCHHHHH
Confidence 455556666644444 78888888 4678877643
No 382
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=30.20 E-value=60 Score=36.84 Aligned_cols=94 Identities=22% Similarity=0.155 Sum_probs=73.5
Q ss_pred CCChhHHHHHHHHHHHhhhHHhHhHhhhhHHHHhhhhHHHhhhhhccccchhhhhhhhHHHHHhhhcCCCccCC------
Q 003941 68 PHDPEIERYKAEIKRLQESEAEIKALSVNYAALLKEKEEQISRLNGEYGLLKQNLDATNAALNAFRNGNSKASS------ 141 (784)
Q Consensus 68 ~~~~eie~ykaei~~lq~seaeikals~nyaallkekedqi~rl~~engslk~nl~~t~~al~~~r~~~~~~s~------ 141 (784)
.+..|+++.+.+|++-+...+.|+.+..+--+.=+=-.+|..+|...=-+.+.+|+++.--|.+-..-.+..+-
T Consensus 204 ~l~~E~~~~~~di~~~~~A~~~l~~~~~~V~~d~~lT~~Qk~~l~d~l~~Y~~~l~~i~~qL~~L~~~L~~L~~~~~~~~ 283 (379)
T PF04518_consen 204 KLEKEREQIRRDIKSCERAKAVLNKQLARVKADAKLTSEQKSELLDSLNNYKDNLNAISNQLSLLQSLLAPLSIQGVSDP 283 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceeecCCCC
Confidence 56789999999999999999999999999888888888999999999899999999988877765554433332
Q ss_pred ---CCcccCCCCCCCCCcccchh
Q 003941 142 ---NGINIPKGSGDLSPSRQHKL 161 (784)
Q Consensus 142 ---n~~~~~kg~~d~sp~r~~~~ 161 (784)
-+.+.|+|..|+++.+..-.
T Consensus 284 ~~~~~~F~i~g~~~~Wi~~L~~l 306 (379)
T PF04518_consen 284 DEVDGAFKITGGSDDWIPTLQIL 306 (379)
T ss_pred CCcCCceEEEecchhHHHHHHHH
Confidence 34556666666666554443
No 383
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=29.88 E-value=8.6e+02 Score=27.54 Aligned_cols=119 Identities=24% Similarity=0.232 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHH-------HHhhhhHHHHHHh-hhHHHHHHHhhh-hhhhhhHH
Q 003941 503 GQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRA-------EVSRSEKEEILVK-LSHSEKMLAEGK-GRANKLEE 573 (784)
Q Consensus 503 gqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~i-------e~~~kEKeei~~K-Ls~~E~~l~e~K-~~~~KL~e 573 (784)
+.|+.|.+|.++|+.=.+-....+.+.-+.|+...... +..+.++++.+.+ |..++..-.+++ ....|+=.
T Consensus 76 ~~~~~E~d~~~~l~~~v~d~~rri~~~kerL~e~~ee~~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~~~~ 155 (319)
T KOG0796|consen 76 RDYGYEWDALEILERFVADVDRRIEKAKERLAETVEERSEEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQKAMK 155 (319)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 45677777777766655555555444444454442211 1224455555543 456666666666 57778888
Q ss_pred hHHHHHH-HHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHhcCCch-HHHHHHHHhcCCCHHHHHH
Q 003941 574 DNAKLRL-AVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQRNHSK-EVLDLMVRMLGFSDEDKQR 638 (784)
Q Consensus 574 Dn~kLR~-ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~R~~sK-EVL~LMArMLgFSDEEK~r 638 (784)
.++.|+. .++.+....+-....+ .-++.| +|-+.-..+|+.+|-+++.
T Consensus 156 e~E~lk~~e~e~~~~~~~~~~~~~-----------------~~~~qkl~VCeVCGa~L~~~D~d~Rl 205 (319)
T KOG0796|consen 156 EVEELKAKEKEEAEESYNTTMPGA-----------------SAQQQKLRVCEVCGAFLSVNDADRRL 205 (319)
T ss_pred HHHHHHHHHHHHHHHHHccCcchh-----------------hhhhhhhhHHHhhhHHHhccchHHHH
Confidence 8888887 5665555443322111 124455 8999999999999988763
No 384
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=29.86 E-value=85 Score=34.09 Aligned_cols=62 Identities=24% Similarity=0.219 Sum_probs=41.6
Q ss_pred HHHHHHHhhhHHHHHHHHH--HhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHH
Q 003941 280 TEMRKELNGKLSELRRLQM--ELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALE 341 (784)
Q Consensus 280 ~~~~~el~ek~sei~rlq~--~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~ 341 (784)
.+||..++++..++|-|.. +.+..+-.....-+..|+..++.++.+...++.++.+++....
T Consensus 2 ~el~~~~~~~~~~~r~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (378)
T TIGR01554 2 SELKEQREEIVAEIRSLLDKAEKLEKELTAAALEKEELETDVEKLKEEIKLLEDAIADLEKVTE 65 (378)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4688888888899998887 3433222222235667777777777777777777776666544
No 385
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.84 E-value=8e+02 Score=30.71 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhhccCCcc------hhhhHH----------HHHHHHHHHHhcCCchHHHHHHHHh
Q 003941 578 LRLAVEQSMTRLNRMSVDSD------FLVDRR----------IVIKLLVTYFQRNHSKEVLDLMVRM 628 (784)
Q Consensus 578 LR~ALeqsl~RL~~ms~dsD------~~VDRR----------IVtkLLLTYf~R~~sKEVL~LMArM 628 (784)
.++.|+.||+-|++..|=.+ .+++|| .|.+|+=.|..=.+..+|-+|.-++
T Consensus 115 AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~ll~~F~~Yk~v~~I~~Ls~si 181 (793)
T KOG2180|consen 115 AKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQLLNHFIAYKSVDEIANLSESI 181 (793)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 36789999999988765333 233343 3444444333333344666666555
No 386
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=29.20 E-value=57 Score=23.97 Aligned_cols=20 Identities=25% Similarity=0.596 Sum_probs=14.4
Q ss_pred HHHhhHHHHHhhhhhHHHhH
Q 003941 466 EIQKSKEIIDGLNNKLANCM 485 (784)
Q Consensus 466 E~~~ske~iedL~~~L~~~m 485 (784)
|+..++..|.||..+|..|.
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 45666777777777777775
No 387
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=29.15 E-value=1e+03 Score=28.17 Aligned_cols=141 Identities=14% Similarity=0.184 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003941 376 EEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAK 455 (784)
Q Consensus 376 Eeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~ 455 (784)
.++....+.+..+|...+.+...+..++..|...|=.......++...-...-+.|..+-+.+-.+|.. ++.-+..-.+
T Consensus 56 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile-~k~~~f~~~~ 134 (475)
T PRK10361 56 EHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFE-HSNRRVDEQN 134 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_pred HHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 003941 456 QEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLK 534 (784)
Q Consensus 456 qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk 534 (784)
++.+ +.-+.=++++|++.++++...- ...-.+-.-|..-+.....-... +..+...|+..||
T Consensus 135 ~~~l----~~ll~Pl~e~l~~f~~~v~~~~---~~~~~~~~~L~~qi~~L~~~n~~----------i~~ea~nLt~ALk 196 (475)
T PRK10361 135 RQSL----NSLLSPLREQLDGFRRQVQDSF---GKEAQERHTLAHEIRNLQQLNAQ----------MAQEAINLTRALK 196 (475)
T ss_pred HHHH----HHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHc
No 388
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=29.14 E-value=4.7e+02 Score=24.22 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhh
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (784)
..++|+..++.|......|...+.++...+..+.
T Consensus 7 q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~ 40 (126)
T TIGR00293 7 ELQILQQQVESLQAQIAALRALIAELETAIETLE 40 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777788888888888888888887777773
No 389
>smart00338 BRLZ basic region leucin zipper.
Probab=29.07 E-value=1.1e+02 Score=25.66 Aligned_cols=35 Identities=43% Similarity=0.498 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhh
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~ 345 (784)
-+..|...+..|+.+|..|..++..|...+..++.
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777777766654
No 390
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=28.92 E-value=1.1e+03 Score=28.44 Aligned_cols=230 Identities=17% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHhhhchhHHHHHHHhHHHHHHHHHHHH-------HhhhhhhhHHHhHHH------------HHhhchHHHHHHhhcccC
Q 003941 211 LLEEKNRSLAAERAAYESQTRQLRMELE-------QQRNKFADVQLKLQE------------EQRLNESFQDELKSLKMD 271 (784)
Q Consensus 211 ~le~~~~~~aa~qa~~~~~i~~l~~el~-------~~~~k~~~~~~~lqe------------e~k~n~~fqe~l~~lk~~ 271 (784)
|-||......+.|-..|..+.-|+-+.+ .++-++.+-=.+|.+ -.++|+-+.-|.+.=...
T Consensus 223 lreElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v~~~q~sL~kvl~aE~kaR~~k 302 (531)
T PF15450_consen 223 LREELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFVQQNQKSLNKVLNAEQKARDAK 302 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q ss_pred ccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCcc
Q 003941 272 KDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKI 351 (784)
Q Consensus 272 ~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~ 351 (784)
-.-....+..|..-|++.++-+.-- .+--.......++-|+.+-..|+.-+..|..+...|.+.+-.+
T Consensus 303 ~~~e~sk~eeL~~~L~~~lea~q~a----gkla~Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aL-------- 370 (531)
T PF15450_consen 303 EKLEESKAEELATKLQENLEAMQLA----GKLAQQETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILAL-------- 370 (531)
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHh----hhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred CCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 003941 352 FPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEEL 431 (784)
Q Consensus 352 ~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeEL 431 (784)
..+-..+-..|..-|..+.++.... .-++..-|++++.-.-..-.+=.+|+|.=-.-|+++
T Consensus 371 ----------------s~rld~qEqtL~~rL~e~~~e~~~~---~r~~lekl~~~q~e~~~~l~~v~eKVd~LpqqI~~v 431 (531)
T PF15450_consen 371 ----------------SWRLDLQEQTLNLRLSEAKNEWESD---ERKSLEKLDQWQNEMEKHLKEVQEKVDSLPQQIEEV 431 (531)
T ss_pred ----------------hhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHH
Q 003941 432 RENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTI 488 (784)
Q Consensus 432 reenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~meal 488 (784)
-..|..++.++.. .+++|-..-.-.|..+++.|++.++.+
T Consensus 432 s~Kc~~~Ksd~d~-----------------kIdtE~k~R~~eV~~vRqELa~lLssv 471 (531)
T PF15450_consen 432 SDKCDLHKSDSDT-----------------KIDTEGKAREREVGAVRQELATLLSSV 471 (531)
T ss_pred HHHHHHHHhhhhh-----------------hccHHHHHHHHHHHHHHHHHHHHHHHH
No 391
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=28.91 E-value=8.5e+02 Score=27.15 Aligned_cols=61 Identities=23% Similarity=0.287 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhcc
Q 003941 526 SAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMS 593 (784)
Q Consensus 526 ~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms 593 (784)
++.....|..|.+++-.. +.-.-.+.-|..+...|++.. .-...++|+||.+-|.+|+.+.
T Consensus 129 LaEaeyLlrlA~qrL~l~-~Dv~~Al~lL~~AD~rLa~~~------dp~l~~vR~Ala~Di~~L~~~~ 189 (372)
T PF04375_consen 129 LAEAEYLLRLANQRLQLE-GDVQTALALLQSADQRLAELD------DPSLLPVRQALAQDIAALRAVP 189 (372)
T ss_pred HHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhcC------CcchHHHHHHHHHHHHHHHCCC
Confidence 333444555565554221 111112233444444444421 1345678889988888888765
No 392
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=28.66 E-value=4.9e+02 Score=27.82 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=24.0
Q ss_pred hhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHh
Q 003941 244 FADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMEL 300 (784)
Q Consensus 244 ~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l 300 (784)
....+..+++.. .++++.++.|+ .|.-.+...+..|...-+..-.+.|.++
T Consensus 227 ~~~~~~~le~~~---~~~ee~~~~L~---ekme~e~~~~~~e~e~~l~~k~~eq~~~ 277 (297)
T PF02841_consen 227 QKEQEQMLEQQE---RSYEEHIKQLK---EKMEEEREQLLQEQERLLEQKLQEQEEL 277 (297)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444443 36777777765 2322333344555544444444444444
No 393
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=28.31 E-value=5.8e+02 Score=25.43 Aligned_cols=24 Identities=29% Similarity=0.455 Sum_probs=12.5
Q ss_pred hhhhhhHHhHHHHHHHH----HHHHHHH
Q 003941 566 GRANKLEEDNAKLRLAV----EQSMTRL 589 (784)
Q Consensus 566 ~~~~KL~eDn~kLR~AL----eqsl~RL 589 (784)
..+..|..+|+.||+-- =-.+.||
T Consensus 82 ~~i~rL~~ENe~lR~Wa~t~LPd~V~RL 109 (135)
T TIGR03495 82 QRIERLKRENEDLRRWADTPLPDDVIRL 109 (135)
T ss_pred HHHHHHHHcCHHHHHHhcCCCcHHHHHH
Confidence 34444566666666533 3344555
No 394
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=28.27 E-value=4.6e+02 Score=23.88 Aligned_cols=31 Identities=23% Similarity=0.451 Sum_probs=15.2
Q ss_pred HHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003941 561 LAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 561 l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 591 (784)
++.++..+.-|+.--.+++..-+.=|.||++
T Consensus 41 m~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~ 71 (79)
T PF08581_consen 41 MQQIRQKVYELEQAHRKMKQQYEEEIARLRR 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444554455555555555555543
No 395
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=28.05 E-value=3.5e+02 Score=31.89 Aligned_cols=52 Identities=23% Similarity=0.178 Sum_probs=31.9
Q ss_pred HHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 295 RLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 295 rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
-.+++.-|-+-.++.|+|.-|=..+..++++..++..+-..|.+..+++|+.
T Consensus 44 pee~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r 95 (472)
T TIGR03752 44 PEELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKR 95 (472)
T ss_pred cchhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666777777766666566666666666666666666666655443
No 396
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=28.01 E-value=1.1e+03 Score=27.99 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhh
Q 003941 578 LRLAVEQSMTRLNR 591 (784)
Q Consensus 578 LR~ALeqsl~RL~~ 591 (784)
+...|..++--+.+
T Consensus 211 ~~~tLaGs~g~it~ 224 (459)
T KOG0288|consen 211 LISTLAGSLGNITS 224 (459)
T ss_pred hhhhhhccCCCcce
Confidence 44455555333334
No 397
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=27.98 E-value=3.9e+02 Score=22.97 Aligned_cols=94 Identities=16% Similarity=0.262 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHH
Q 003941 316 KRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSE 395 (784)
Q Consensus 316 k~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E 395 (784)
++.+.....+......++..|...+......+.... . +. ++ ...-.+..-+..|...+.....+
T Consensus 4 ~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~-~-------~~--s~------~~~~~~~~~~~~l~~~i~~~~~~ 67 (123)
T PF02050_consen 4 EQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQ-Q-------GV--SV------AQLRNYQRYISALEQAIQQQQQE 67 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------S-------GG--GH------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-C-------CC--CH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555533322221 0 11 10 12334555678888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Q 003941 396 RDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRE 433 (784)
Q Consensus 396 ~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELre 433 (784)
++.+.+++.+.|..|++..- +.+.++-|.+
T Consensus 68 ~~~~~~~~~~~r~~l~~a~~--------~~k~~e~L~e 97 (123)
T PF02050_consen 68 LERLEQEVEQAREELQEARR--------ERKKLEKLKE 97 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHH
Confidence 99999999999999988753 2345555654
No 398
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=27.98 E-value=1e+03 Score=27.80 Aligned_cols=107 Identities=13% Similarity=0.073 Sum_probs=57.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh-hc--hH
Q 003941 389 LKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKM-MN--HS 465 (784)
Q Consensus 389 L~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~-~n--~~ 465 (784)
+.-++.|.+++...|..-|+.|++-..... +|+=. .+.+-+-..|..||..|-...+....+.. +. +-
T Consensus 244 v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~g--------vlDP~-~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sP 314 (434)
T PRK15178 244 ILWLENDVKSAQENLGAARLELLKIQHIQK--------DIDPK-ETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNP 314 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------CcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 444566677777777777777776664322 22211 12444555677888877777666555533 22 33
Q ss_pred HHHhhHHHHHhhhhhHHHhHHHHHhhh-hhHhhHHHHHHHHH
Q 003941 466 EIQKSKEIIDGLNNKLANCMRTIEAKN-VELLNLQTALGQYF 506 (784)
Q Consensus 466 E~~~ske~iedL~~~L~~~mealeAKn-vEl~NLQtALgqfq 506 (784)
.+..++.+|..|.++++..-..+-+.. . ..|...+++|.
T Consensus 315 qV~~l~~rI~aLe~QIa~er~kl~~~~g~--~~la~~laeYe 354 (434)
T PRK15178 315 LIPRLSAKIKVLEKQIGEQRNRLSNKLGS--QGSSESLSLFE 354 (434)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhcCCCC--CchhHHHHHHH
Confidence 555555555555555544333332210 0 14556677764
No 399
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=27.86 E-value=7.2e+02 Score=25.97 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=19.0
Q ss_pred hcCCCHHHHHHhhhcccC-CCCCcccccccCCCccccccc
Q 003941 628 MLGFSDEDKQRIGMAQQG-AGKGVVRGVLGLPGRLVGGII 666 (784)
Q Consensus 628 MLgFSDEEK~riGL~~q~-~g~G~~rgv~g~pgRlvgg~~ 666 (784)
..-+|++++.++.-.-.. .|.. +.-.+-.-+-++|||.
T Consensus 184 a~~l~~~~~~~i~~~l~~~~~~~-v~~~~~vdp~ligGi~ 222 (246)
T TIGR03321 184 AFELPEEQREQIRDTIRETLGPE-IRLRFQTEPDLIGGIE 222 (246)
T ss_pred cCCCCHHHHHHHHHHHHHHHCCC-eeEEeeeCchhcCceE
Confidence 455788888877644332 1222 2222333345666554
No 400
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=27.57 E-value=3.5e+02 Score=28.91 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=13.9
Q ss_pred cchhhHHHHHHHHHhhhHHHHHHHH
Q 003941 273 DKTSIEITEMRKELNGKLSELRRLQ 297 (784)
Q Consensus 273 ~kts~~~~~~~~el~ek~sei~rlq 297 (784)
+++..+..+++.||.++..++.++|
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~ 178 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQ 178 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666655555444
No 401
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=27.56 E-value=2.4e+02 Score=28.05 Aligned_cols=71 Identities=28% Similarity=0.436 Sum_probs=50.2
Q ss_pred HhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHH
Q 003941 255 QRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKT 334 (784)
Q Consensus 255 ~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~ 334 (784)
..+|.-|..++-.|+ ..|.++|.-....++-||++ ..-+|++|...+..|++|...|..+..
T Consensus 14 ~E~N~QLekqi~~l~-------~kiek~r~n~~drl~siR~y-----------e~Ms~~~l~~llkqLEkeK~~Le~qlk 75 (129)
T PF15372_consen 14 LELNDQLEKQIIILR-------EKIEKIRGNPSDRLSSIRRY-----------EQMSVESLNQLLKQLEKEKRSLENQLK 75 (129)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHhCCCccccHHHHHH-----------hhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555543 34556666555666666662 112789999999999999999999999
Q ss_pred HHHHHHHHh
Q 003941 335 ELVAALEKN 343 (784)
Q Consensus 335 eL~a~L~~~ 343 (784)
.++-.|++=
T Consensus 76 ~~e~rLeQE 84 (129)
T PF15372_consen 76 DYEWRLEQE 84 (129)
T ss_pred HHHHHHHHH
Confidence 999888764
No 402
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=27.45 E-value=4.2e+02 Score=23.20 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=12.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 003941 430 ELRENNEYQRAQILHLENVLKQT 452 (784)
Q Consensus 430 ELreenE~~R~~Is~lEraLK~~ 452 (784)
+|+.+...+..+|.+++..+...
T Consensus 9 ~l~~~l~~~~~q~~~l~~~~~~~ 31 (106)
T PF01920_consen 9 ELNQQLQQLEQQIQQLERQLREL 31 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555556666666655543
No 403
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=27.28 E-value=4.3e+02 Score=23.19 Aligned_cols=62 Identities=21% Similarity=0.363 Sum_probs=31.9
Q ss_pred hhHHHHHHhhh-HHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHH
Q 003941 545 SEKEEILVKLS-HSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIK 607 (784)
Q Consensus 545 kEKeei~~KLs-~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtk 607 (784)
.++..++.+|. ..+.....+......++.+...|+.+.+-+=..|.. ..+...+.+++.++.
T Consensus 57 ~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~~~~e~~l~~-~~~~e~L~~~~~i~~ 119 (127)
T smart00502 57 KRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAINFTEEALNS-GDPTELLLSKKLIIE 119 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHH
Confidence 44444555543 233334444455566677777776665544444433 223455666655544
No 404
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=26.99 E-value=5.9e+02 Score=24.74 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=27.7
Q ss_pred HHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHH
Q 003941 471 KEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAE 508 (784)
Q Consensus 471 ke~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE 508 (784)
..+|..+.++|...|+.+...-..+.++..+|+.-|+-
T Consensus 121 d~el~~l~~ql~~hl~s~~~n~~~l~~~~~~ie~~~~~ 158 (160)
T PF13094_consen 121 DEELLPLLKQLNKHLESMQNNLQQLKGLLEAIERSYAA 158 (160)
T ss_pred hHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHh
Confidence 45677777777777877777555688888888877763
No 405
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.90 E-value=1.9e+02 Score=28.80 Aligned_cols=31 Identities=39% Similarity=0.498 Sum_probs=18.1
Q ss_pred cccCccchhhHHHHHHHHHhhhHHHHHHHHH
Q 003941 268 LKMDKDKTSIEITEMRKELNGKLSELRRLQM 298 (784)
Q Consensus 268 lk~~~~kts~~~~~~~~el~ek~sei~rlq~ 298 (784)
.+-+..+.+.|+.++.+||..+..++..|+.
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~Lkk 182 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKK 182 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777777765554444433
No 406
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=26.87 E-value=4.5e+02 Score=29.66 Aligned_cols=34 Identities=35% Similarity=0.365 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 313 ENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 313 ~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
..|+..+..|+++...++.++.+|...|......
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~ 363 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKL 363 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 6677777888888888888888888887777543
No 407
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=26.56 E-value=5.6e+02 Score=27.10 Aligned_cols=112 Identities=16% Similarity=0.241 Sum_probs=0.0
Q ss_pred ccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHH
Q 003941 367 VSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLE 446 (784)
Q Consensus 367 ~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lE 446 (784)
.+.+.|+..+.=.-..-.|+++|.++-....++.++..+- .......-.|-. .|+.+=++|-+.++..++
T Consensus 83 ~~gTdfS~~~~~dwEevrLkrELa~Le~~l~~~~~~~~~~-----~~~~~~~~~lvk-----~e~EqLL~YK~~ql~~~~ 152 (195)
T PF12761_consen 83 EKGTDFSATEGTDWEEVRLKRELAELEEKLSKVEQAAESR-----RSDTDSKPALVK-----REFEQLLDYKERQLRELE 152 (195)
T ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc-----ccCCcchHHHHH-----HHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHH
Q 003941 447 NVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQ 499 (784)
Q Consensus 447 raLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQ 499 (784)
. -+.....-+...++-|+-+.+++.---+-|..|..||..|+
T Consensus 153 ~-----------~~~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 153 E-----------GRSKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred c-----------cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 408
>PRK10869 recombination and repair protein; Provisional
Probab=26.40 E-value=1.1e+03 Score=27.72 Aligned_cols=14 Identities=29% Similarity=0.150 Sum_probs=9.1
Q ss_pred hhhccccchhhhhh
Q 003941 110 RLNGEYGLLKQNLD 123 (784)
Q Consensus 110 rl~~engslk~nl~ 123 (784)
-+-.|||+=|-|+=
T Consensus 26 vitGetGaGKS~il 39 (553)
T PRK10869 26 VITGETGAGKSIAI 39 (553)
T ss_pred EEECCCCCChHHHH
Confidence 34567777777654
No 409
>COG4423 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.39 E-value=2.8e+02 Score=25.74 Aligned_cols=63 Identities=16% Similarity=0.122 Sum_probs=45.0
Q ss_pred HHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHH
Q 003941 540 AEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRR 603 (784)
Q Consensus 540 ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRR 603 (784)
++.+.+|...+++ .|..+.+--.+++++.++.....+|+..|.....+++.+.+......|+.
T Consensus 10 ~d~lar~LA~rtg-~S~t~AV~~Al~~~lar~r~r~~pL~~~l~a~~~~~~a~~~~~~k~~d~~ 72 (81)
T COG4423 10 VDRLARELAARTG-ESKTDAVRDALKERLARLRAREIPLRERLAAILRRLRALPSPDSKRLDKI 72 (81)
T ss_pred HHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 3444444333332 35667777777778888888899999999999999999887776666633
No 410
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.97 E-value=1.4e+02 Score=25.03 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 003941 376 EEMEQSLQKLEKDLKETCSERDKALQELTRLK 407 (784)
Q Consensus 376 Eeme~sl~~L~~eL~e~~~E~dKa~kEL~RLR 407 (784)
..+...++.|++++..+..+.+++..|+.+|+
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~ 51 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERLK 51 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555566666666666666666666666663
No 411
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=25.92 E-value=1.1e+03 Score=27.44 Aligned_cols=19 Identities=5% Similarity=0.461 Sum_probs=15.2
Q ss_pred HHHHhhHHHHHhhhhhHHH
Q 003941 465 SEIQKSKEIIDGLNNKLAN 483 (784)
Q Consensus 465 ~E~~~ske~iedL~~~L~~ 483 (784)
..+.++...||+|+++++.
T Consensus 220 ~kVdDLQD~VE~LRkDV~~ 238 (424)
T PF03915_consen 220 TKVDDLQDLVEDLRKDVVQ 238 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888877
No 412
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=25.65 E-value=7.9e+02 Score=25.72 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=29.3
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 003941 368 SSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 368 ~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~ 413 (784)
.++.||..--|..+++.+...|.....-.+....-+.-+..++...
T Consensus 12 ~t~~~~~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L 57 (264)
T PF06008_consen 12 LTGAWPAPYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESL 57 (264)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 4567777777888888887777776655555444455554444433
No 413
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=25.36 E-value=6.9e+02 Score=24.90 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=11.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Q 003941 428 IEELRENNEYQRAQILHLENVLKQ 451 (784)
Q Consensus 428 IeELreenE~~R~~Is~lEraLK~ 451 (784)
..+.++..+....++..+.+.+..
T Consensus 26 F~~~~~~~~~le~~Lk~l~~~~~~ 49 (236)
T PF09325_consen 26 FEEIKDYVDKLEEQLKKLYKSLER 49 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555444443
No 414
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=25.17 E-value=5.2e+02 Score=28.77 Aligned_cols=117 Identities=20% Similarity=0.265 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhc---ccCccc-hhhHHHHHHHHHh------------hhHH
Q 003941 228 SQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSL---KMDKDK-TSIEITEMRKELN------------GKLS 291 (784)
Q Consensus 228 ~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~l---k~~~~k-ts~~~~~~~~el~------------ek~s 291 (784)
..++..|.+....+.++....++||.=.=--.-++.|+..- +..... .-+.+.+.....- +---
T Consensus 12 ~~~~~~k~~t~e~k~~vD~~~LqLqNl~YE~~hL~kEI~~C~~F~s~~~~i~Lv~~eEF~~~ap~~~~~~~~~~~~~H~l 91 (355)
T PF09766_consen 12 FRIKKAKDETAEAKQEVDALHLQLQNLLYEKSHLQKEIKKCLDFKSKYEDIELVPVEEFYAKAPEEISDPELTEDDEHQL 91 (355)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCCCcCccHHHHHHhChhhccccccCCCChHHH
Confidence 35667777778888888877777764222222334444321 111111 1233333333322 2233
Q ss_pred HHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 292 ELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 292 ei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
-|.||+-||.-|.. -....+.|+...+.|.++|.+.+..+..|...|+.+..+
T Consensus 92 ml~RL~~EL~~Rk~--L~~~~~el~~~k~~l~~~~~~k~~~L~~l~~~L~~l~~a 144 (355)
T PF09766_consen 92 MLARLEFELEQRKR--LEEQLKELEQRKKKLQQENKKKKKFLDSLPPQLKSLKKA 144 (355)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46677777765431 223344455555555555555555555555555555433
No 415
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=25.15 E-value=1.2e+03 Score=27.59 Aligned_cols=66 Identities=24% Similarity=0.324 Sum_probs=44.2
Q ss_pred CchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003941 373 PGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLK 450 (784)
Q Consensus 373 ~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK 450 (784)
|+.|+||+-+-.=+.|-+=-+.-.|-|.+|-.+||+=.+.|- +|++|+ +. ..|.+.++.+.|..=+
T Consensus 350 ~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~aK~----~k~EEE------Ya--s~~~kl~l~eaee~r~ 415 (446)
T PF07227_consen 350 PQIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIALAKS----EKIEEE------YA--SRYLKLRLNEAEEERK 415 (446)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH----HHHHHH------HH--HHHHhhhhHHHHHHHH
Confidence 578898887765445555556678999999999999988884 466653 42 2345555555554333
No 416
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.07 E-value=1.5e+03 Score=28.84 Aligned_cols=85 Identities=16% Similarity=0.098 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHH--HHHhhhhhHhhHHHHHHHHHHHHHHh
Q 003941 435 NEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMR--TIEAKNVELLNLQTALGQYFAEIEAK 512 (784)
Q Consensus 435 nE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~me--aleAKnvEl~NLQtALgqfqAE~EA~ 512 (784)
++..++++-+++...--.|-+. |.+..|..++.++.+.|..=++=-.+ .+.+.+..|+-||.-|++.++.+++-
T Consensus 618 v~TL~~~~k~~~~~~~~~~~~i----~~~q~e~~klqeq~~Al~~i~~~~fa~ID~~Sa~rqIael~~~lE~L~~t~~~~ 693 (1104)
T COG4913 618 VETLRETVKAMLSREDFYMIKI----MRQQGEYIKLQEQANALAHIQALNFASIDLPSAQRQIAELQARLERLTHTQSDI 693 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHHHHHHHHHHHHHhcchhhcchhhHHHHHHHHHHHHHHhcCChhHH
Confidence 4555666666555443332222 34566778888888777543322111 33445566777777777777777665
Q ss_pred hhhHHHHHHHH
Q 003941 513 GHLERELALAR 523 (784)
Q Consensus 513 ErLe~ELa~ar 523 (784)
+-+-+-+.+++
T Consensus 694 ~~~~~~l~aaQ 704 (1104)
T COG4913 694 AIAKAALDAAQ 704 (1104)
T ss_pred HHHHHHHHHHH
Confidence 54444444443
No 417
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=24.94 E-value=1e+03 Score=28.52 Aligned_cols=93 Identities=29% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHH--
Q 003941 472 EIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEE-- 549 (784)
Q Consensus 472 e~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKee-- 549 (784)
..|++|..++.-+..-.-. |++|-++ |-..|..+.++...+...|+.+.+.+..+..|++.
T Consensus 420 ~RI~eLt~qlQ~adSKa~~--------------f~~Ec~a---L~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr 482 (518)
T PF10212_consen 420 SRIEELTSQLQHADSKAVH--------------FYAECRA---LQKRLESAEKEKESLEEELKEANQNISRLQDELETTR 482 (518)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --HHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHH
Q 003941 550 --ILVKLSHSEKMLAEGKGRANKLEEDNAKLRLA 581 (784)
Q Consensus 550 --i~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~A 581 (784)
+-..|+..=-++......+.+-.+++..|+.+
T Consensus 483 ~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK~~ 516 (518)
T PF10212_consen 483 RNYEEQLSMMSEHLASMNEQLAKQREEIQTLKLA 516 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 418
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=24.82 E-value=6e+02 Score=24.05 Aligned_cols=29 Identities=31% Similarity=0.247 Sum_probs=12.6
Q ss_pred HhhhhhhhhhHHhHHHHHHHHHHHHHHHh
Q 003941 562 AEGKGRANKLEEDNAKLRLAVEQSMTRLN 590 (784)
Q Consensus 562 ~e~K~~~~KL~eDn~kLR~ALeqsl~RL~ 590 (784)
..+...+.++..+...+++.+++-...+.
T Consensus 104 ~~l~~~~~~l~~~l~~~~~~~~~~~~~l~ 132 (140)
T PRK03947 104 EELEKALEKLEEALQKLASRIAQLAQELQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444433
No 419
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=24.71 E-value=3e+02 Score=28.26 Aligned_cols=35 Identities=17% Similarity=0.364 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
++.|...+..|.++..+++..|..|..-++.-|..
T Consensus 120 ~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl 154 (161)
T TIGR02894 120 NEELEKELEKLRQRLSTIEEDYQTLIDIMDRARKL 154 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777788888887777776654
No 420
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=24.56 E-value=7.1e+02 Score=24.82 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHhhhhH
Q 003941 518 ELALAREESAKLSEYLKNADQRAEVSRSEK 547 (784)
Q Consensus 518 ELa~aree~a~Ls~~Lk~a~q~ie~~~kEK 547 (784)
..+.++..++...+.|...++.|+..+.|-
T Consensus 62 ~Q~~Lr~~~~~~~~~l~~re~~i~rL~~EN 91 (135)
T TIGR03495 62 AQAQLRQQLAQARALLAQREQRIERLKREN 91 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 334455555555566666666666555553
No 421
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=24.32 E-value=1.7e+03 Score=29.07 Aligned_cols=30 Identities=17% Similarity=0.219 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003941 383 QKLEKDLKETCSERDKALQELTRLKQHLIE 412 (784)
Q Consensus 383 ~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe 412 (784)
..=...|.-+..+.++..+++.++|+...-
T Consensus 198 ~~~~~~l~~L~~~~~~l~kdVE~~rer~~~ 227 (1072)
T KOG0979|consen 198 TTKTEKLNRLEDEIDKLEKDVERVRERERK 227 (1072)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444555566666666666655433
No 422
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=24.31 E-value=37 Score=32.55 Aligned_cols=47 Identities=32% Similarity=0.458 Sum_probs=40.8
Q ss_pred HHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHH
Q 003941 561 LAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLL 609 (784)
Q Consensus 561 l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLL 609 (784)
..+++..|.||.+..+.|+-++++.=.+....+ +|...|.|+|...|
T Consensus 47 ~~ege~~~qkL~eqteeLK~kvqe~sk~i~~~~--~~~~qD~~~vl~~l 93 (106)
T PF12443_consen 47 IREGEQMIQKLGEQTEELKDKVQEFSKRIEQDS--PDHLQDSRLVLPSL 93 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCC--cccccccccccccc
Confidence 567888999999999999999999999998877 66689999998764
No 423
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=24.11 E-value=1.1e+03 Score=26.87 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=24.1
Q ss_pred CchhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH
Q 003941 373 PGKEEMEQSLQKLEKDLKET-CSERDKALQELTRLKQHLI 411 (784)
Q Consensus 373 ~~kEeme~sl~~L~~eL~e~-~~E~dKa~kEL~RLRqHLL 411 (784)
|...++.+.+..+..-|..+ +.-..+..+.|.+|+++|.
T Consensus 255 p~~~el~qrLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~ 294 (432)
T TIGR00237 255 PNQDELLQRLDGFNVRLHRAFDTLLHQKKARLEQLVASLQ 294 (432)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55667767776666666443 3345566667777777654
No 424
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=23.86 E-value=1.2e+03 Score=27.07 Aligned_cols=73 Identities=18% Similarity=0.343 Sum_probs=54.8
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003941 374 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLK 450 (784)
Q Consensus 374 ~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK 450 (784)
|.-.|-.+++.-..|...++.-.+|+.-+|.+.|. .+.+-..+..+|++ +|..++++|-.+..++..+-+.+.
T Consensus 86 glr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~-vf~k~k~~~q~LE~---li~~~~EEn~~lqlqL~~l~~e~~ 158 (401)
T PF06785_consen 86 GLRKIRESVEERQQESEQLQSQNQKLKNQLFHVRE-VFMKTKGDIQHLEG---LIRHLREENQCLQLQLDALQQECG 158 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHhcchHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHh
Confidence 44556667777778888888889999999999998 55555556667776 577888888888887777666554
No 425
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=23.43 E-value=4.5e+02 Score=23.59 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=47.3
Q ss_pred cccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHH
Q 003941 268 LKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEK 342 (784)
Q Consensus 268 lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~ 342 (784)
+.-|....+.++..--..|.-|+...|.+=..|-| .+-+++.-...|+.|+.++.. +.++.+++..
T Consensus 15 ~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lpg-----i~~s~eeq~~~i~~Le~~i~~----k~~~L~~~~~ 80 (83)
T PF07544_consen 15 ISKDPPLSSKDLDTATGSLKHKLQKARAAIRELPG-----IDRSVEEQEEEIEELEEQIRK----KREVLQKFKE 80 (83)
T ss_pred HhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCC-----ccCCHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 33345666777777777777788777777666655 667899999999999999887 5555555544
No 426
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=23.42 E-value=5.6e+02 Score=27.37 Aligned_cols=69 Identities=30% Similarity=0.345 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHh------------------hhhHHHHHHhhhHHHH
Q 003941 498 LQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVS------------------RSEKEEILVKLSHSEK 559 (784)
Q Consensus 498 LQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~------------------~kEKeei~~KLs~~E~ 559 (784)
||.||.+.|+-.|=.|.++..|+. .|.++|+.-.-+--.. .+||++-|-+ .|.
T Consensus 8 LQ~AL~~LQaa~ekRE~lE~rLR~------~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILa---LEa 78 (205)
T PF12240_consen 8 LQQALAQLQAACEKREQLERRLRT------RLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILA---LEA 78 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHH---HHH
Q ss_pred HHHhhhhhhhhhHHhHHHHHHHHHHHHHH
Q 003941 560 MLAEGKGRANKLEEDNAKLRLAVEQSMTR 588 (784)
Q Consensus 560 ~l~e~K~~~~KL~eDn~kLR~ALeqsl~R 588 (784)
...-|... -|+++..|
T Consensus 79 d~~kWEqk-------------YLEEs~mr 94 (205)
T PF12240_consen 79 DMTKWEQK-------------YLEESAMR 94 (205)
T ss_pred HHHHHHHH-------------HHHHHHHH
No 427
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=23.41 E-value=44 Score=30.56 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhhHHhHHHHHHH
Q 003941 556 HSEKMLAEGKGRANKLEEDNAKLRLA 581 (784)
Q Consensus 556 ~~E~~l~e~K~~~~KL~eDn~kLR~A 581 (784)
.++.++.+.+..+.++..++..|++.
T Consensus 97 ~a~~i~~~A~~~~~~l~~~~~~lk~~ 122 (131)
T PF05103_consen 97 EAEEIIEEARAEAERLREEIEELKRQ 122 (131)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555543
No 428
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.29 E-value=1.3e+03 Score=27.54 Aligned_cols=21 Identities=29% Similarity=0.256 Sum_probs=11.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 003941 431 LRENNEYQRAQILHLENVLKQ 451 (784)
Q Consensus 431 LreenE~~R~~Is~lEraLK~ 451 (784)
|...+-..+.+++.+|..+|-
T Consensus 260 les~~sq~~e~~selE~llkl 280 (521)
T KOG1937|consen 260 LESKRSQFEEQNSELEKLLKL 280 (521)
T ss_pred HHhhhHHHHHHHHHHHHHHHh
Confidence 433444556666777765554
No 429
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=23.17 E-value=7.3e+02 Score=28.51 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=14.1
Q ss_pred HHHHhhHHHHHhhhhhHHHhHHHHHh
Q 003941 465 SEIQKSKEIIDGLNNKLANCMRTIEA 490 (784)
Q Consensus 465 ~E~~~ske~iedL~~~L~~~mealeA 490 (784)
.++..++++|..|...++.....+.+
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~ 96 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDA 96 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666665555555443333
No 430
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=23.07 E-value=3.1e+02 Score=29.32 Aligned_cols=56 Identities=11% Similarity=0.172 Sum_probs=36.5
Q ss_pred HHHHHHHHhhccCCcchhhhHHHHHHH-----HHHHHhcCCch---HHHHHHHHhcCCCHHHHHHhhhc
Q 003941 582 VEQSMTRLNRMSVDSDFLVDRRIVIKL-----LVTYFQRNHSK---EVLDLMVRMLGFSDEDKQRIGMA 642 (784)
Q Consensus 582 Leqsl~RL~~ms~dsD~~VDRRIVtkL-----LLTYf~R~~sK---EVL~LMArMLgFSDEEK~riGL~ 642 (784)
|++.++++++.|.+. ..|+..+ -|+|-+..=++ +||.-+|..||||..+-.++-..
T Consensus 111 l~~~~~~~~~~~~~r-----~~l~~~lL~~l~~vA~ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~ 174 (267)
T PRK09430 111 LREKLRQFRSVCGGR-----FDLLRMFLEIQIQAAFADGSLHPNERQVLYVIAEELGFSRFQFDQLLRM 174 (267)
T ss_pred HHHHHHHHHHHhccc-----HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 566667777766221 2233333 35666643333 69999999999999988877554
No 431
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=23.04 E-value=8.4e+02 Score=29.02 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=12.6
Q ss_pred HhhhHHHHHHHhhhhhhhhhHHhHHHHHH
Q 003941 552 VKLSHSEKMLAEGKGRANKLEEDNAKLRL 580 (784)
Q Consensus 552 ~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ 580 (784)
.|+-+.+..+..+.++..-+++.+..|++
T Consensus 382 ~k~~q~q~k~~k~~kel~~~~E~n~~l~k 410 (493)
T KOG0804|consen 382 RKLQQLQTKLKKCQKELKEEREENKKLIK 410 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444
No 432
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=22.98 E-value=1.2e+03 Score=26.82 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHhhcc
Q 003941 574 DNAKLRLAVEQSMTRLNRMS 593 (784)
Q Consensus 574 Dn~kLR~ALeqsl~RL~~ms 593 (784)
....+|+||.+-|.+|+.+.
T Consensus 176 ~l~~lR~Aia~DI~~L~av~ 195 (390)
T PRK10920 176 SLITVRRAITDDIATLSAVS 195 (390)
T ss_pred chHHHHHHHHHHHHHHHcCC
Confidence 34689999999999998876
No 433
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=22.98 E-value=1e+03 Score=26.16 Aligned_cols=18 Identities=22% Similarity=-0.073 Sum_probs=9.9
Q ss_pred hHhhHHHHHHHHHHHHHH
Q 003941 494 ELLNLQTALGQYFAEIEA 511 (784)
Q Consensus 494 El~NLQtALgqfqAE~EA 511 (784)
-|.||+.+..++.+-.+.
T Consensus 181 ~l~~l~~~~~~ln~~~~~ 198 (359)
T COG1463 181 LLDNLAQFTDALNARDGD 198 (359)
T ss_pred HHHHHHHHHHHHHhcchh
Confidence 445666666655555543
No 434
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=22.76 E-value=1.4e+02 Score=33.42 Aligned_cols=60 Identities=25% Similarity=0.254 Sum_probs=0.0
Q ss_pred hhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHH--------HhhhHHHHHHHHHHhc
Q 003941 242 NKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKE--------LNGKLSELRRLQMELN 301 (784)
Q Consensus 242 ~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~e--------l~ek~sei~rlq~~l~ 301 (784)
+....++.+.+.=++.|+.++++.+.+.-.-++.-..-..+..+ ||+|+..||.||..|.
T Consensus 137 ~~~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L~ 204 (342)
T PF06632_consen 137 DANSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLLA 204 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
No 435
>PRK14692 lagellar hook-associated protein FlgL; Provisional
Probab=22.42 E-value=1.2e+03 Score=29.11 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHhc-ccccCCcch-HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCC
Q 003941 276 SIEITEMRKELNGKLSELRRLQMELN-RREDGDAND-VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFP 353 (784)
Q Consensus 276 s~~~~~~~~el~ek~sei~rlq~~l~-~~e~e~~~~-~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~ 353 (784)
.|-...+-+-|+.-.+++-++|.+|+ |+.-..++| .+...+ ...|+.+...+..-.+....+...+..+
T Consensus 6 ~~~y~~~l~nLq~~qs~L~klqeQLSSGkrI~~pSDDPaaa~~--alrL~s~i~~l~Qy~~Ni~~A~s~L~~t------- 76 (749)
T PRK14692 6 KLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDASTYID--NTRLEYEIKTLEQVKESTSRAQEMTQNS------- 76 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCChhhCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 34445556678888899999999998 555544553 322222 2245555566655555555555555444
Q ss_pred CCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHhh
Q 003941 354 DASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKE------TCSERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 354 da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e------~~~E~dKa~kEL~RLRqHLLe~E~ 415 (784)
+ .....|...|+.++.-+.. ...+|....+||..|+.||+..-.
T Consensus 77 -----------E-------taL~sI~~iLqr~ReLaVqAaNGT~S~~dR~AIA~El~~L~eqLl~iAN 126 (749)
T PRK14692 77 -----------M-------KALQDMVKLLEDFKVKVTQAASDSNSQTSREAIAKELERIKESIVQLAN 126 (749)
T ss_pred -----------H-------HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 1245666677777655543 345677889999999999988754
No 436
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=22.35 E-value=8.9e+02 Score=25.13 Aligned_cols=143 Identities=24% Similarity=0.326 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhccccc
Q 003941 226 YESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRRED 305 (784)
Q Consensus 226 ~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~ 305 (784)
+...+..|..-..+-+..+.+++..|.+|..-...|....-. +..+.-.+.-...++.+|. ++..-|..
T Consensus 27 l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~~g~-~W~r~~S~~~~~~l~~~l~-------~~~~~L~~--- 95 (296)
T PF13949_consen 27 LEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAKYGE-RWTRPPSSELNASLRKELQ-------KYREYLEQ--- 95 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-TCGSS-HHHHCHHHHHHHH-------HHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCCcHhhHHHHHHHHH-------HHHHHHHH---
Confidence 344455555556667788999999999999999998888754 5555533333334444433 33333322
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHH
Q 003941 306 GDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKL 385 (784)
Q Consensus 306 e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L 385 (784)
+..+-..++..+.....-...|..-..+|.+.|-..... + . |...+.-..|..|
T Consensus 96 --A~~sD~~~~~~~~~~~~~l~~L~~~~~~L~~~lp~~~~~------------------~--~----~~~~~~i~~L~~l 149 (296)
T PF13949_consen 96 --ASESDSQLRSKLESIEENLELLSGPIEELEASLPSSSPS------------------D--S----PQVSEVIRQLREL 149 (296)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHS--B---------------------S--S----GSS-HHHHHHHHH
T ss_pred --HHhhHHHHHHHHHHHHHHHHHHcCChhhHHhhCCCCCcc------------------c--c----cchhHHHHHHHHH
Confidence 334555566666665555666666666666655444211 0 0 1223444445666
Q ss_pred HHHHHHhHHHHHHHHHHHHH
Q 003941 386 EKDLKETCSERDKALQELTR 405 (784)
Q Consensus 386 ~~eL~e~~~E~dKa~kEL~R 405 (784)
-..|.+...+|+....+|..
T Consensus 150 l~~l~~l~~eR~~~~~~lk~ 169 (296)
T PF13949_consen 150 LNKLEELKKEREELLEQLKE 169 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66677777778777776665
No 437
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=22.24 E-value=1.4e+03 Score=27.30 Aligned_cols=65 Identities=20% Similarity=0.078 Sum_probs=35.4
Q ss_pred hhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH-------hhhhHHHHHHhhhHHHHH
Q 003941 493 VELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEV-------SRSEKEEILVKLSHSEKM 560 (784)
Q Consensus 493 vEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~-------~~kEKeei~~KLs~~E~~ 560 (784)
.++.|||.-+.|.--|- .+|+...++++--..+|+..+-...+.+++ -.+.+..+..+|++++..
T Consensus 297 le~Enlqmr~qqleeen---telRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~e 368 (502)
T KOG0982|consen 297 LEKENLQMRDQQLEEEN---TELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEE 368 (502)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56678888777765444 345666666665555554433333333333 234444455677775443
No 438
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=22.24 E-value=6.5e+02 Score=25.08 Aligned_cols=34 Identities=32% Similarity=0.299 Sum_probs=17.4
Q ss_pred HHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHH
Q 003941 466 EIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQ 499 (784)
Q Consensus 466 E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQ 499 (784)
+..+.+++|++|+++|......+++--.+..||+
T Consensus 155 ~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~ 188 (192)
T PF05529_consen 155 ENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQ 188 (192)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666664444444333444443
No 439
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=22.15 E-value=2.7e+02 Score=31.52 Aligned_cols=83 Identities=24% Similarity=0.222 Sum_probs=59.1
Q ss_pred HHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHh
Q 003941 264 ELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 264 ~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~ 343 (784)
+|-.|--.+-+...+++.++.+.|+--.+|..+.. ..+ -.+.|+.....|+++...++.+..++++++...
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~-----~~~----~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKR-----KGE----DAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----cCC----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34344444445566677777777776666665321 111 245688888889999999999999999999999
Q ss_pred hhcCCCccCCCC
Q 003941 344 RKSSNEKIFPDA 355 (784)
Q Consensus 344 r~t~~~k~~~da 355 (784)
-..+|+-+.||+
T Consensus 100 ~~~iPN~~~~~v 111 (425)
T PRK05431 100 LLRIPNLPHDSV 111 (425)
T ss_pred HHhCCCCCCccC
Confidence 999999988887
No 440
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=22.09 E-value=1.8e+03 Score=28.75 Aligned_cols=85 Identities=12% Similarity=0.167 Sum_probs=44.7
Q ss_pred hhHHhhHHhhhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHH
Q 003941 205 EKELADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRK 284 (784)
Q Consensus 205 ~~e~~d~le~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~ 284 (784)
+|+..+.|+.--..+...+. +...++++++.+++-=.+.++++.+|..+.+-. ... -..+...++..
T Consensus 43 ~k~~~~~l~~tl~~l~~~~~-~~~~~~~~~~~i~~ap~~~~~~~~~l~~~~~~~---------~~~---~~~~s~~~Leq 109 (1109)
T PRK10929 43 QAEIVEALQSALNWLEERKG-SLERAKQYQQVIDNFPKLSAELRQQLNNERDEP---------RSV---PPNMSTDALEQ 109 (1109)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhccc---------ccc---cccCCHHHHHH
Confidence 45555556554444443332 234555666666665555555555555322111 001 12233467777
Q ss_pred HHhhhHHHHHHHHHHhcc
Q 003941 285 ELNGKLSELRRLQMELNR 302 (784)
Q Consensus 285 el~ek~sei~rlq~~l~~ 302 (784)
.|+.-.+.+..+|..+..
T Consensus 110 ~l~~~~~~L~~~q~~l~~ 127 (1109)
T PRK10929 110 EILQVSSQLLEKSRQAQQ 127 (1109)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777777777777665
No 441
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=21.96 E-value=1.4e+03 Score=27.15 Aligned_cols=29 Identities=24% Similarity=0.142 Sum_probs=13.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003941 386 EKDLKETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 386 ~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 414 (784)
.+.-.....++.....|-..+|.|+-.+|
T Consensus 26 ~k~~s~~~aq~~~~~a~~~ai~a~~~~~E 54 (459)
T KOG0288|consen 26 EKAQSRLSAQLVILRAESRAIKAKLQEKE 54 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555555555544443
No 442
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=21.93 E-value=1.7e+02 Score=25.37 Aligned_cols=50 Identities=20% Similarity=0.322 Sum_probs=36.2
Q ss_pred HHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 292 ELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 292 ei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
-|-.|++.|.- ..++++.|-.++....++...|+.+...|...|..++..
T Consensus 5 Ri~~LE~~la~-----qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~ 54 (69)
T PF04102_consen 5 RIEELEIKLAF-----QEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELEDP 54 (69)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 35567777764 457999999999999999999999999999999998744
No 443
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=21.84 E-value=1.8e+02 Score=29.84 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=25.0
Q ss_pred HHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003941 561 LAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 561 l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 591 (784)
..+|+.++.|+++++..||..|..=-+++..
T Consensus 31 ~eeLr~EL~KvEeEI~TLrqvL~aKer~~~e 61 (162)
T PF04201_consen 31 REELRSELAKVEEEIQTLRQVLAAKERHCAE 61 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4678889999999999999998766665544
No 444
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=21.77 E-value=1.8e+03 Score=28.50 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccC-CCCccCCCCCchhHHHHHHHHHHHHHH
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLD-GKMVSSESFPGKEEMEQSLQKLEKDLK 390 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~-s~~~~~~sf~~kEeme~sl~~L~~eL~ 390 (784)
-..++.-..++++..+-+..+|..|+..+.+--..- -+--++..+-.+ .-+.+.-+=+.-.++-+.|.. ++
T Consensus 552 ~~r~rq~~~~~r~~ld~leaa~e~lE~r~~~~e~~~----~e~~se~e~~l~~l~l~~el~~~~~~d~ls~mkd----~~ 623 (984)
T COG4717 552 QSRIRQHWQQLRKALDQLEAAYEALEGRFAAAEAAM----AEWQSEWEEALDELGLSRELSPEQQLDILSTMKD----LK 623 (984)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHhccCCccCCcHHHHHHHHHHHH----HH
Confidence 456777788899999999999999998877653321 011111111111 001111111345555444443 44
Q ss_pred HhHHHHHHHHHHHHHHHHHHHH
Q 003941 391 ETCSERDKALQELTRLKQHLIE 412 (784)
Q Consensus 391 e~~~E~dKa~kEL~RLRqHLLe 412 (784)
+...-.--+.+++.||++|+-.
T Consensus 624 ~~~q~~~EL~~q~~~L~ee~~a 645 (984)
T COG4717 624 KLMQKKAELTHQVARLREEQAA 645 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455566777788877533
No 445
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=21.59 E-value=2e+03 Score=29.03 Aligned_cols=62 Identities=19% Similarity=0.182 Sum_probs=27.1
Q ss_pred hhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q 003941 477 LNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVS 543 (784)
Q Consensus 477 L~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~ 543 (784)
|..++...-+.+..-+.++.|..- ..|. |..-.|..+.+.+-.+.+.+--..+.+...+...
T Consensus 1013 l~~q~~e~~re~~~ld~Qi~~~~~--~~~~---ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~ 1074 (1294)
T KOG0962|consen 1013 LERKLKELERELSELDKQILEADI--KSVK---EERVKLEEEREKLSSEKNLLLGEMKQYESQIKKL 1074 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHH--HHHH---HHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHH
Confidence 344444444455555556666551 1121 2223444444444444333333344444444433
No 446
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=21.57 E-value=6.7e+02 Score=23.40 Aligned_cols=54 Identities=24% Similarity=0.245 Sum_probs=26.4
Q ss_pred hhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003941 479 NKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKN 535 (784)
Q Consensus 479 ~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~ 535 (784)
..+..++..|...-..|.+|+..|+.-.. +...+...|..+..++..++..++.
T Consensus 9 ~~I~~~i~~i~~~v~~l~~l~~~~~t~~~---~~~~~~~~l~~~~~~~~~~~~~ik~ 62 (151)
T cd00179 9 EEIRGNIDKISEDVEELQKLHSQLLTAPD---ADPELKQELESLVQEIKKLAKEIKG 62 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555544455666655544332 2234455555555555554444333
No 447
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=21.51 E-value=1.8e+02 Score=25.29 Aligned_cols=31 Identities=13% Similarity=0.313 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHH
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEK 342 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~ 342 (784)
+.++...+.++++||+.++-....++..+..
T Consensus 9 ~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 9 LPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566667777777766666666665543
No 448
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.34 E-value=1.7e+03 Score=28.01 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=34.0
Q ss_pred HHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHH
Q 003941 467 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFA 507 (784)
Q Consensus 467 ~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqA 507 (784)
+..+...|.++++++.+--..|.+|++.+.||+.|=.-.--
T Consensus 123 v~~lqs~i~riknd~~epyk~i~~kt~vl~rLhva~~lLrr 163 (797)
T KOG2211|consen 123 VAELQSEIKRIKNDNKEPYKIIWLKTMVLTRLHVAENLLRR 163 (797)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556889999999999999999999999999998655443
No 449
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=21.33 E-value=1.7e+03 Score=28.05 Aligned_cols=14 Identities=29% Similarity=0.558 Sum_probs=7.3
Q ss_pred HHHHHHHHhhhHHH
Q 003941 279 ITEMRKELNGKLSE 292 (784)
Q Consensus 279 ~~~~~~el~ek~se 292 (784)
..+|..|||+|+-|
T Consensus 556 a~~Lk~ei~kki~e 569 (762)
T PLN03229 556 AEKLKAEINKKFKE 569 (762)
T ss_pred hhhhhHHHHHHHHH
Confidence 44455555555555
No 450
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=21.30 E-value=1.4e+03 Score=26.93 Aligned_cols=78 Identities=22% Similarity=0.395 Sum_probs=58.8
Q ss_pred cccCccchhhHHHHHHHH------Hh-----------hhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhH
Q 003941 268 LKMDKDKTSIEITEMRKE------LN-----------GKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLK 330 (784)
Q Consensus 268 lk~~~~kts~~~~~~~~e------l~-----------ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk 330 (784)
+.+|++|..+++.-+-.+ || -.+.-|||-=..|..--..-+.....+|+.-|+.+-.||+.|.
T Consensus 226 ~pLDkdk~~~~l~~lWRDSii~R~Ld~~~y~ly~~l~~el~siRr~Cd~lP~~m~tKveelar~Lr~~I~~VarENs~Lq 305 (442)
T PF06637_consen 226 LPLDKDKFETDLRNLWRDSIIPRSLDNLGYSLYHPLGPELESIRRTCDHLPKIMTTKVEELARSLRAGIERVARENSDLQ 305 (442)
T ss_pred cccchHHHHHHHHHHHHHHHHhhhhhcCCcccCCCCcchHHHHHHHHhhchHHHHHHHHHHHHHHhhhHHHHHHhhhHHH
Confidence 678999998888766443 22 3466778877777665555556678888888999999999999
Q ss_pred hhHHHHHHHHHHhhh
Q 003941 331 MEKTELVAALEKNRK 345 (784)
Q Consensus 331 ~~~~eL~a~L~~~r~ 345 (784)
.++-+++..|.....
T Consensus 306 rQKle~e~~l~a~qe 320 (442)
T PF06637_consen 306 RQKLEAEQGLQASQE 320 (442)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999888888876643
No 451
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=21.29 E-value=5.8e+02 Score=23.04 Aligned_cols=80 Identities=26% Similarity=0.275 Sum_probs=43.6
Q ss_pred HHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHH
Q 003941 260 SFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAA 339 (784)
Q Consensus 260 ~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~ 339 (784)
..-+++-.|--.+-..-.+++.++.+-|+--.+|..+-. +| .-++.|+.....+.++...++.+..+++..
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~--~~-------~~~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKK--AG-------EDAEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH--TT-------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh--Cc-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443333333344455555554444444443321 11 345667777777777777777788888887
Q ss_pred HHHhhhcCC
Q 003941 340 LEKNRKSSN 348 (784)
Q Consensus 340 L~~~r~t~~ 348 (784)
|...=.++|
T Consensus 97 l~~~l~~iP 105 (108)
T PF02403_consen 97 LNELLLSIP 105 (108)
T ss_dssp HHHHHCTS-
T ss_pred HHHHHHcCC
Confidence 777655444
No 452
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=21.29 E-value=4.1e+02 Score=22.90 Aligned_cols=73 Identities=14% Similarity=0.198 Sum_probs=37.4
Q ss_pred hhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHh--cCCchHHHHHHHHhcC-CCHHHHHH
Q 003941 564 GKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQ--RNHSKEVLDLMVRMLG-FSDEDKQR 638 (784)
Q Consensus 564 ~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~--R~~sKEVL~LMArMLg-FSDEEK~r 638 (784)
++....+...+...+|..+......|.... ....+|.--|..++=.-.. ..-...++..+..+.. .|+|+|++
T Consensus 50 l~~~~~~~~~~~~~~r~~~~~~r~~l~~ll--~~~~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~~~~~~LtpeQR~~ 125 (125)
T PF13801_consen 50 LRALMDEFRQEMRALRQELRAARQELRALL--AAPPPDEAAIEALLEEIREAQAELRQERLEHLLEIRAVLTPEQRAR 125 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-GGGHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC
Confidence 333344444455555555555555555555 2235777766666554444 1112256666666554 67777754
No 453
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=21.20 E-value=2.1e+02 Score=28.65 Aligned_cols=37 Identities=22% Similarity=0.342 Sum_probs=28.7
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 374 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 374 ~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHL 410 (784)
|+++||..-..|.+++..++.|..++..||+.+|...
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~ 111 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKY 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888777777788777777777777777777653
No 454
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=20.99 E-value=8.7e+02 Score=28.58 Aligned_cols=87 Identities=16% Similarity=0.232 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHH---HHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhH
Q 003941 496 LNLQTALGQYFAEIEAKGHLERELALAREE---SAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLE 572 (784)
Q Consensus 496 ~NLQtALgqfqAE~EA~ErLe~ELa~aree---~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~ 572 (784)
.+++.+|.+..+.. .+.|-.++.- +..|+..|..-...++........+..|-..+...+....-.+..|.
T Consensus 407 ~~V~~ii~~Lt~~~------~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~ 480 (507)
T PF05600_consen 407 SAVEEIISQLTNPR------TQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALV 480 (507)
T ss_pred HHHHHHHHHhcCHH------HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45566677666666 4444444443 55566666555555555554444455555555556666666777777
Q ss_pred HhHHHHHHHHHHHHHH
Q 003941 573 EDNAKLRLAVEQSMTR 588 (784)
Q Consensus 573 eDn~kLR~ALeqsl~R 588 (784)
...-.|+..++..|-.
T Consensus 481 ~~Tr~Lq~~iE~~ISk 496 (507)
T PF05600_consen 481 ERTRELQKQIEADISK 496 (507)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888888887764
No 455
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=20.85 E-value=9.4e+02 Score=25.85 Aligned_cols=80 Identities=15% Similarity=0.317 Sum_probs=0.0
Q ss_pred hhHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-------------hHHHHhhHHHHHhhhhhHHHhHHH
Q 003941 424 DSKIIEELRE---NNEYQRAQILHLENVLKQTLAKQEEFKMMN-------------HSEIQKSKEIIDGLNNKLANCMRT 487 (784)
Q Consensus 424 d~k~IeELre---enE~~R~~Is~lEraLK~~~a~qeelk~~n-------------~~E~~~ske~iedL~~~L~~~mea 487 (784)
+.++|.+|.. .+...|..|-....+-.+++.++..|..+. +.++++..-...+-.+.|.++|..
T Consensus 92 E~KVv~pL~~Y~~~cK~~r~elK~~~~ar~kEikq~~~Leklr~k~psdr~~isqae~el~kas~~~~rt~~~Lee~i~~ 171 (219)
T PF06730_consen 92 EAKVVEPLSQYGTICKHARDELKKFNKARNKEIKQLKQLEKLRQKNPSDRQIISQAESELQKASVDATRTTKQLEETIDN 171 (219)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhHhhHHHHHHHH
Q 003941 488 IEAKNVELLNLQTALGQY 505 (784)
Q Consensus 488 leAKnvEl~NLQtALgqf 505 (784)
.+. .-|.-|+..|..|
T Consensus 172 FEk--qKl~DlK~i~sdF 187 (219)
T PF06730_consen 172 FEK--QKLKDLKKIFSDF 187 (219)
T ss_pred HHH--HHHHHHHHHHHHH
No 456
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=20.80 E-value=4.5e+02 Score=32.15 Aligned_cols=70 Identities=21% Similarity=0.384 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHH
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLK 390 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~ 390 (784)
.+.-++|+++++.-|...|+..+.+|+..+...+.- -|++.+++..-+.||.
T Consensus 80 ~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~k----------------------------iEelk~~i~~~q~eL~ 131 (907)
T KOG2264|consen 80 ILREQKRILASVSLELTELEVKRQELNSEIEEINTK----------------------------IEELKRLIPQKQLELS 131 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----------------------------HHHHHHHHHHhHHHHH
Confidence 366678888888888888888888888877776322 3455555554455555
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 003941 391 ETCSERDKALQELTRLKQ 408 (784)
Q Consensus 391 e~~~E~dKa~kEL~RLRq 408 (784)
.+..+++.++.-+.-|++
T Consensus 132 ~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 132 ALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHhHHHHHHHHHHHHHh
Confidence 555555555555544444
No 457
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=20.69 E-value=7.4e+02 Score=23.57 Aligned_cols=20 Identities=15% Similarity=0.278 Sum_probs=10.0
Q ss_pred HHHHHhhhhhHHHhHHHHHh
Q 003941 471 KEIIDGLNNKLANCMRTIEA 490 (784)
Q Consensus 471 ke~iedL~~~L~~~mealeA 490 (784)
...++.++..+.+.+...+.
T Consensus 30 ~~~l~~R~~~I~~~l~~a~~ 49 (156)
T PRK05759 30 MKALEERQKKIADGLAAAER 49 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544333
No 458
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=20.68 E-value=1.4e+03 Score=26.87 Aligned_cols=40 Identities=28% Similarity=0.386 Sum_probs=28.1
Q ss_pred CCchhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH
Q 003941 372 FPGKEEMEQSLQKLEKDLKET-CSERDKALQELTRLKQHLI 411 (784)
Q Consensus 372 f~~kEeme~sl~~L~~eL~e~-~~E~dKa~kEL~RLRqHLL 411 (784)
.|...++.+.++.++.-|.-+ ++-.+...+-|..|+++|-
T Consensus 260 vP~~~el~~~l~~~~~rL~~~~~~~l~~~~~~l~~l~~~l~ 300 (440)
T COG1570 260 VPDSAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQ 300 (440)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577888988888888777654 3345566666777777754
No 459
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=20.28 E-value=1.2e+03 Score=26.06 Aligned_cols=118 Identities=21% Similarity=0.233 Sum_probs=68.2
Q ss_pred hHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhh
Q 003941 250 KLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSL 329 (784)
Q Consensus 250 ~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tl 329 (784)
.++.-++.|++|-.-+.. -.+-.-...|.+ |.+-.-.++.-+.+--||| ..|-..+++-+.|-..+
T Consensus 83 q~~ks~~Q~e~~v~a~e~-----~~~rll~d~i~n-Lk~se~~lkqQ~~~a~RrE--------~ilv~rlA~kEQEmqe~ 148 (330)
T KOG2991|consen 83 QLRKSWKQYEAYVQALEG-----KYTRLLSDDITN-LKESEEKLKQQQQEAARRE--------NILVMRLATKEQEMQEC 148 (330)
T ss_pred HHHHHHHHHHHHHHHhcC-----cccchhHHHHHh-hHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 344456677777766654 112222222222 1111112333334444444 35666788888899999
Q ss_pred HhhHHHHHHHHH----HhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 003941 330 KMEKTELVAALE----KNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTR 405 (784)
Q Consensus 330 k~~~~eL~a~L~----~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~R 405 (784)
+.++..|.+.+. ++|++ -++|. .++. ...|+++|+++..-.+.++-||..
T Consensus 149 ~sqi~~lK~qq~Ps~~qlR~~------------------llDPA----inl~----F~rlK~ele~tk~Klee~QnelsA 202 (330)
T KOG2991|consen 149 TSQIQYLKQQQQPSVAQLRST------------------LLDPA----INLF----FLRLKGELEQTKDKLEEAQNELSA 202 (330)
T ss_pred HHHHHHHHHhhCcHHHHHHHH------------------hhChH----HHHH----HHHHHHHHHHHHHHHHHHHhhhhe
Confidence 999999887653 34444 23331 2333 688999999997777777778765
Q ss_pred HH
Q 003941 406 LK 407 (784)
Q Consensus 406 LR 407 (784)
.+
T Consensus 203 wk 204 (330)
T KOG2991|consen 203 WK 204 (330)
T ss_pred ee
Confidence 54
No 460
>PLN02678 seryl-tRNA synthetase
Probab=20.14 E-value=5.3e+02 Score=29.91 Aligned_cols=84 Identities=24% Similarity=0.296 Sum_probs=56.7
Q ss_pred HHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHH
Q 003941 263 DELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEK 342 (784)
Q Consensus 263 e~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~ 342 (784)
+++-.|--.+-+...+++.++.+.|.--.+|..+. .++ + ..+.|......|.++...|+.++.+++.+|..
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k--~~~---~----~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~ 103 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLK--IAK---E----DATELIAETKELKKEITEKEAEVQEAKAALDA 103 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCC---C----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444433444555666677776666666665532 111 2 23556667778888888888888999999999
Q ss_pred hhhcCCCccCCCC
Q 003941 343 NRKSSNEKIFPDA 355 (784)
Q Consensus 343 ~r~t~~~k~~~da 355 (784)
.-..+|+-+.||+
T Consensus 104 ~~~~iPNi~~~~V 116 (448)
T PLN02678 104 KLKTIGNLVHDSV 116 (448)
T ss_pred HHHhCCCCCCccC
Confidence 8899999988887
No 461
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.06 E-value=6.1e+02 Score=22.91 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 003941 500 TALGQYFAEIEAKGHLERELALAREESAKLSEYLKN 535 (784)
Q Consensus 500 tALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~ 535 (784)
..+|+.....+..+.|..+...+.+++..+...++.
T Consensus 57 k~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~ 92 (108)
T PF02403_consen 57 KEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKE 92 (108)
T ss_dssp HHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433333323333344444444444444433333
No 462
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=20.06 E-value=1.8e+02 Score=30.80 Aligned_cols=36 Identities=28% Similarity=0.270 Sum_probs=26.6
Q ss_pred hhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHh
Q 003941 553 KLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLN 590 (784)
Q Consensus 553 KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~ 590 (784)
.|+++|+. +|+.++.|+++++..||..|..--+++.
T Consensus 40 ~LSe~Eke--elr~EL~kvEeEI~TLrqVLaAKerH~~ 75 (208)
T KOG4010|consen 40 ALSEEEKE--ELRTELAKVEEEIVTLRQVLAAKERHAA 75 (208)
T ss_pred hhcHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555 7888899999999999988876555543
No 463
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=20.05 E-value=1.4e+03 Score=26.38 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHhHHH
Q 003941 683 SFADLWVDFLLKETEER 699 (784)
Q Consensus 683 SFADLWVEFLLkEAeer 699 (784)
.+..+.+.=|+.-|++.
T Consensus 270 ~~~~~~~~AL~~~A~e~ 286 (445)
T PRK13428 270 ALEHVARLALLERAERA 286 (445)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 46666666677666543
Done!