Query 003941
Match_columns 784
No_of_seqs 47 out of 49
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 08:59:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 98.7 0.00026 8.9E-09 65.1 37.3 37 555-591 247-283 (284)
2 1i84_S Smooth muscle myosin he 98.4 1.9E-07 6.6E-12 109.6 7.8 25 228-252 857-881 (1184)
3 1c1g_A Tropomyosin; contractIl 98.4 0.0013 4.6E-08 60.4 36.2 19 561-579 260-278 (284)
4 1i84_S Smooth muscle myosin he 98.3 3E-07 1E-11 108.1 6.0 32 237-268 859-890 (1184)
5 3vkg_A Dynein heavy chain, cyt 97.3 0.031 1.1E-06 72.8 27.0 195 389-619 1929-2123(3245)
6 3na7_A HP0958; flagellar bioge 97.1 0.12 4.1E-06 51.6 22.5 46 465-510 97-142 (256)
7 2dfs_A Myosin-5A; myosin-V, in 96.6 0.026 8.9E-07 67.0 16.1 91 241-343 927-1017(1080)
8 3vkg_A Dynein heavy chain, cyt 96.2 0.72 2.5E-05 60.6 26.6 221 277-547 1866-2086(3245)
9 3na7_A HP0958; flagellar bioge 95.7 2 6.8E-05 42.9 23.2 16 466-481 68-83 (256)
10 2v71_A Nuclear distribution pr 95.4 0.66 2.2E-05 46.0 16.8 165 317-533 10-177 (189)
11 1go4_E MAD1 (mitotic arrest de 94.1 0.15 5.2E-06 46.2 7.9 85 310-415 12-96 (100)
12 2dfs_A Myosin-5A; myosin-V, in 93.6 1.7 5.8E-05 51.9 17.8 63 378-447 982-1044(1080)
13 1wt6_A Myotonin-protein kinase 93.6 0.3 1E-05 43.0 8.6 48 492-542 9-56 (81)
14 3oja_B Anopheles plasmodium-re 92.8 1.8 6.1E-05 46.4 14.9 79 513-591 505-583 (597)
15 3oja_B Anopheles plasmodium-re 92.6 1.1 3.6E-05 48.1 12.9 35 516-550 536-570 (597)
16 2v71_A Nuclear distribution pr 92.2 10 0.00034 37.7 20.0 77 516-593 94-170 (189)
17 1upt_B Golgi autoantigen, golg 90.1 0.35 1.2E-05 40.6 4.7 39 604-643 9-47 (60)
18 3hnw_A Uncharacterized protein 87.1 4.8 0.00016 37.8 10.8 64 383-450 71-134 (138)
19 2v4h_A NF-kappa-B essential mo 84.7 7.5 0.00026 36.0 10.5 32 473-504 25-56 (110)
20 3ghg_A Fibrinogen alpha chain; 83.9 1.9 6.4E-05 48.5 7.4 102 318-448 51-153 (562)
21 3ghg_A Fibrinogen alpha chain; 80.7 6.6 0.00022 44.3 10.1 83 494-586 100-189 (562)
22 1deq_A Fibrinogen (alpha chain 80.3 8.3 0.00029 41.9 10.5 73 318-414 54-126 (390)
23 3a7p_A Autophagy protein 16; c 79.6 22 0.00076 34.4 12.1 56 393-452 67-122 (152)
24 2ocy_A RAB guanine nucleotide 77.6 53 0.0018 31.7 15.2 46 544-589 85-131 (154)
25 3ol1_A Vimentin; structural ge 75.4 33 0.0011 31.2 11.5 42 462-510 17-58 (119)
26 3oja_A Leucine-rich immune mol 75.1 28 0.00095 36.7 12.6 37 311-347 436-472 (487)
27 3oja_A Leucine-rich immune mol 74.9 36 0.0012 35.9 13.3 30 385-414 365-394 (487)
28 3thf_A Protein shroom; coiled- 74.4 62 0.0021 32.4 13.9 72 514-614 70-143 (190)
29 2e7s_A RAB guanine nucleotide 74.0 8 0.00027 36.8 7.3 87 490-579 43-130 (135)
30 3s84_A Apolipoprotein A-IV; fo 71.1 96 0.0033 31.7 22.4 21 571-591 174-194 (273)
31 3tnu_B Keratin, type II cytosk 71.1 61 0.0021 29.4 12.5 28 514-541 72-99 (129)
32 3o0z_A RHO-associated protein 71.0 17 0.00059 35.6 9.0 58 214-271 55-112 (168)
33 2ocy_A RAB guanine nucleotide 70.6 79 0.0027 30.6 16.1 87 491-580 56-143 (154)
34 3i00_A HIP-I, huntingtin-inter 70.5 34 0.0011 31.7 10.4 66 310-413 15-80 (120)
35 3tnu_A Keratin, type I cytoske 70.0 57 0.002 29.8 11.9 28 514-541 74-101 (131)
36 1m1j_A Fibrinogen alpha subuni 69.9 37 0.0013 38.0 12.2 107 318-452 52-158 (491)
37 1go4_E MAD1 (mitotic arrest de 69.6 8 0.00027 35.2 5.9 36 371-410 6-42 (100)
38 3swk_A Vimentin; cytoskeleton, 69.5 24 0.00082 30.7 8.8 37 492-528 20-60 (86)
39 2zqm_A Prefoldin beta subunit 68.3 28 0.00096 30.1 9.1 91 311-412 14-109 (117)
40 2efr_A General control protein 68.1 89 0.003 30.1 21.8 53 382-452 2-54 (155)
41 4e61_A Protein BIM1; EB1-like 68.0 15 0.00052 33.7 7.5 50 516-565 10-59 (106)
42 3jsv_C NF-kappa-B essential mo 68.0 20 0.00068 32.4 8.1 35 473-507 3-37 (94)
43 2eqb_B RAB guanine nucleotide 67.0 74 0.0025 28.8 13.0 48 516-563 46-94 (97)
44 2v4h_A NF-kappa-B essential mo 65.2 32 0.0011 31.9 9.0 81 419-528 19-101 (110)
45 1f5n_A Interferon-induced guan 63.1 83 0.0028 35.5 13.7 91 386-480 486-582 (592)
46 3qh9_A Liprin-beta-2; coiled-c 61.9 34 0.0012 30.3 8.2 56 233-303 24-80 (81)
47 3nmd_A CGMP dependent protein 60.7 18 0.00061 31.3 6.1 34 467-507 35-68 (72)
48 2efr_A General control protein 59.9 1.3E+02 0.0043 29.1 18.7 65 522-593 75-139 (155)
49 1t2k_D Cyclic-AMP-dependent tr 59.8 15 0.00051 29.7 5.3 38 375-412 24-61 (61)
50 1fxk_A Prefoldin; archaeal pro 59.5 39 0.0014 28.8 8.2 88 312-410 10-102 (107)
51 3mq7_A Bone marrow stromal ant 59.3 1.2E+02 0.0041 28.6 11.9 42 499-540 11-55 (121)
52 1p9i_A Cortexillin I/GCN4 hybr 59.1 8 0.00027 28.4 3.1 29 312-340 1-29 (31)
53 3o0z_A RHO-associated protein 58.5 1.4E+02 0.0049 29.2 20.0 65 492-559 68-132 (168)
54 2l7b_A Apolipoprotein E, APO-E 58.1 34 0.0012 35.7 8.9 87 396-509 109-196 (307)
55 1deq_A Fibrinogen (alpha chain 57.2 1E+02 0.0036 33.7 12.6 50 487-542 96-145 (390)
56 3trt_A Vimentin; cytoskeleton, 55.5 29 0.001 28.7 6.5 63 219-301 11-73 (77)
57 3mq9_A Bone marrow stromal ant 55.5 1.2E+02 0.0041 31.8 12.7 82 498-582 382-466 (471)
58 1x79_B RAB GTPase binding effe 54.3 19 0.00065 33.3 5.6 32 312-343 8-39 (112)
59 2a01_A Apolipoprotein A-I; fou 53.1 1.8E+02 0.0062 28.8 14.8 117 376-509 51-170 (243)
60 3hnw_A Uncharacterized protein 52.3 1.5E+02 0.0052 27.7 12.4 25 556-580 107-131 (138)
61 1ic2_A Tropomyosin alpha chain 51.9 1.1E+02 0.0037 25.9 10.2 36 556-591 38-73 (81)
62 3tnu_B Keratin, type II cytosk 51.6 1.4E+02 0.0048 27.1 11.2 13 515-527 87-99 (129)
63 3s84_A Apolipoprotein A-IV; fo 51.6 2.1E+02 0.0073 29.2 25.5 74 512-591 171-245 (273)
64 3s4r_A Vimentin; alpha-helix, 51.5 1E+02 0.0035 27.1 9.6 36 471-506 8-43 (93)
65 2eqb_B RAB guanine nucleotide 49.9 1.5E+02 0.0051 26.9 12.5 38 545-582 54-92 (97)
66 1m1j_A Fibrinogen alpha subuni 49.1 1.4E+02 0.0048 33.5 12.2 48 489-542 96-143 (491)
67 3a7p_A Autophagy protein 16; c 46.7 1.7E+02 0.0057 28.5 10.9 80 314-421 65-144 (152)
68 1nfn_A Apolipoprotein E3; lipi 46.0 2.1E+02 0.0073 27.6 11.8 19 396-414 101-119 (191)
69 3tnu_A Keratin, type I cytoske 45.3 76 0.0026 28.9 8.2 113 208-328 11-123 (131)
70 4efa_E V-type proton ATPase su 45.1 2.3E+02 0.0078 27.6 14.5 49 564-614 82-130 (233)
71 4gkw_A Spindle assembly abnorm 44.7 1.6E+02 0.0056 28.4 10.4 58 551-608 45-103 (167)
72 2fxo_A Myosin heavy chain, car 44.2 1.9E+02 0.0064 26.4 15.9 32 553-584 91-122 (129)
73 1i4d_A Arfaptin 2, partner of 44.1 2.7E+02 0.0092 28.2 17.2 181 284-509 7-195 (224)
74 3qh9_A Liprin-beta-2; coiled-c 43.0 92 0.0031 27.6 7.8 23 430-452 30-52 (81)
75 3cl3_D NF-kappa-B essential mo 41.5 49 0.0017 31.4 6.3 69 382-454 4-76 (130)
76 1t6f_A Geminin; coiled-coil, c 41.3 25 0.00084 27.2 3.5 23 277-299 7-29 (37)
77 1l8d_A DNA double-strand break 40.0 1.4E+02 0.0046 25.9 8.6 31 313-343 13-43 (112)
78 1ci6_A Transcription factor AT 39.5 66 0.0023 26.4 6.1 38 375-412 25-62 (63)
79 2b9c_A Striated-muscle alpha t 39.3 2.5E+02 0.0087 26.5 13.0 78 522-599 50-127 (147)
80 2yy0_A C-MYC-binding protein; 39.0 29 0.00099 28.0 3.8 32 310-341 19-50 (53)
81 1x79_B RAB GTPase binding effe 38.0 2.5E+02 0.0084 26.0 12.0 24 390-414 2-25 (112)
82 3cve_A Homer protein homolog 1 37.7 62 0.0021 27.9 5.8 37 374-410 15-51 (72)
83 3cvf_A Homer-3, homer protein 37.6 60 0.0021 28.4 5.8 37 374-410 21-57 (79)
84 1jnm_A Proto-oncogene C-JUN; B 37.4 27 0.00093 28.3 3.5 37 375-411 24-60 (62)
85 2i1j_A Moesin; FERM, coiled-co 37.2 55 0.0019 36.6 7.0 28 567-594 434-461 (575)
86 2yy0_A C-MYC-binding protein; 37.1 28 0.00096 28.1 3.4 30 317-346 19-48 (53)
87 3cve_A Homer protein homolog 1 36.7 1.7E+02 0.0058 25.2 8.4 64 313-411 3-66 (72)
88 2i1j_A Moesin; FERM, coiled-co 36.6 46 0.0016 37.2 6.3 36 374-409 329-364 (575)
89 2fxo_A Myosin heavy chain, car 35.5 2.6E+02 0.0088 25.4 14.6 24 435-458 71-94 (129)
90 3tul_A Cell invasion protein S 33.8 2.7E+02 0.0094 27.1 10.2 103 475-587 23-128 (158)
91 2l7b_A Apolipoprotein E, APO-E 33.7 4E+02 0.014 27.8 12.3 51 375-434 138-188 (307)
92 3ol1_A Vimentin; structural ge 32.9 2.8E+02 0.0095 25.1 14.4 34 377-410 17-50 (119)
93 1wt6_A Myotonin-protein kinase 32.7 78 0.0027 28.0 5.7 47 222-268 15-64 (81)
94 3i00_A HIP-I, huntingtin-inter 31.0 2.8E+02 0.0094 25.7 9.4 19 426-444 15-33 (120)
95 1ci6_A Transcription factor AT 30.9 62 0.0021 26.5 4.6 34 312-345 25-58 (63)
96 1l8d_A DNA double-strand break 30.8 2.6E+02 0.0089 24.1 12.2 38 377-414 7-44 (112)
97 3mq9_A Bone marrow stromal ant 30.2 4.9E+02 0.017 27.1 14.0 48 431-485 416-463 (471)
98 1jnm_A Proto-oncogene C-JUN; B 30.1 65 0.0022 26.0 4.6 36 311-346 23-58 (62)
99 3mq7_A Bone marrow stromal ant 29.7 3.6E+02 0.012 25.4 13.1 54 435-495 48-101 (121)
100 2e7s_A RAB guanine nucleotide 29.5 2.1E+02 0.0071 27.3 8.5 51 541-591 70-121 (135)
101 2wt7_A Proto-oncogene protein 29.5 1.2E+02 0.0042 24.6 6.1 37 375-411 25-61 (63)
102 3nmd_A CGMP dependent protein 29.2 68 0.0023 27.8 4.7 50 279-347 21-70 (72)
103 2wt7_A Proto-oncogene protein 28.8 65 0.0022 26.3 4.4 34 312-345 25-58 (63)
104 3v6i_A V-type ATP synthase sub 28.8 3.7E+02 0.013 25.2 14.8 46 566-614 67-112 (187)
105 3iv1_A Tumor susceptibility ge 28.4 2.4E+02 0.0081 24.7 8.0 30 498-527 16-45 (78)
106 2wt7_B Transcription factor MA 28.3 92 0.0031 27.8 5.6 37 374-410 49-85 (90)
107 3r2p_A Apolipoprotein A-I; amp 28.3 3.9E+02 0.013 25.3 13.2 41 469-509 130-171 (185)
108 3m91_A Proteasome-associated A 28.0 1.3E+02 0.0043 24.5 5.8 33 515-547 14-46 (51)
109 3u59_A Tropomyosin beta chain; 27.4 3.1E+02 0.011 23.9 11.1 19 516-534 43-61 (101)
110 3a7o_A Autophagy protein 16; c 27.2 87 0.003 27.3 5.0 52 282-338 23-74 (75)
111 1ez3_A Syntaxin-1A; three heli 26.8 3.1E+02 0.011 23.7 10.8 17 575-591 97-113 (127)
112 1t2k_D Cyclic-AMP-dependent tr 26.7 83 0.0028 25.3 4.6 33 312-344 24-56 (61)
113 1hjb_A Ccaat/enhancer binding 26.6 1.2E+02 0.0041 26.7 6.0 40 375-414 38-77 (87)
114 3okq_A BUD site selection prot 26.4 4.3E+02 0.015 25.4 10.1 21 389-409 56-76 (141)
115 4dk0_A Putative MACA; alpha-ha 26.3 1.8E+02 0.0063 29.1 8.1 23 377-399 67-89 (369)
116 2jee_A YIIU; FTSZ, septum, coi 25.6 69 0.0024 28.2 4.2 62 244-305 8-69 (81)
117 3iox_A AGI/II, PA; alpha helix 25.4 6.2E+02 0.021 28.6 12.6 9 501-509 67-75 (497)
118 1m1j_B Fibrinogen beta chain; 25.2 5.7E+02 0.019 28.4 12.2 20 324-343 93-112 (464)
119 1m1j_B Fibrinogen beta chain; 25.1 5.9E+02 0.02 28.3 12.3 30 310-339 168-197 (464)
120 2w83_C C-JUN-amino-terminal ki 24.9 3.6E+02 0.012 23.8 8.7 27 312-338 4-30 (77)
121 3r2p_A Apolipoprotein A-I; amp 24.7 4.5E+02 0.015 24.9 11.3 16 494-509 134-149 (185)
122 3iox_A AGI/II, PA; alpha helix 23.8 8.3E+02 0.028 27.6 13.3 56 481-538 32-87 (497)
123 3q8t_A Beclin-1; autophagy, AT 23.7 3.8E+02 0.013 23.6 12.8 19 389-407 27-45 (96)
124 1gu4_A CAAT/enhancer binding p 23.5 96 0.0033 26.8 4.7 35 313-347 39-73 (78)
125 3he5_A Synzip1; heterodimeric 23.5 62 0.0021 25.8 3.1 24 309-332 2-25 (49)
126 1hjb_A Ccaat/enhancer binding 22.9 91 0.0031 27.5 4.5 34 314-347 40-73 (87)
127 2f1m_A Acriflavine resistance 22.2 3E+02 0.01 26.5 8.5 34 375-408 55-88 (277)
128 2wuj_A Septum site-determining 21.6 31 0.0011 27.9 1.2 39 302-340 19-57 (57)
129 1fxk_C Protein (prefoldin); ar 21.1 4.4E+02 0.015 23.4 11.4 31 560-590 96-126 (133)
130 1nkp_B MAX protein, MYC proto- 20.9 1.1E+02 0.0039 25.6 4.5 35 310-344 47-81 (83)
131 3fpp_A Macrolide-specific effl 20.7 3.2E+02 0.011 27.0 8.5 27 377-403 66-92 (341)
132 1ses_A Seryl-tRNA synthetase; 20.6 3.8E+02 0.013 28.8 9.6 46 310-355 64-109 (421)
133 3m91_A Proteasome-associated A 20.5 2.4E+02 0.008 22.9 6.1 37 430-477 13-49 (51)
134 1gmj_A ATPase inhibitor; coile 20.4 2.5E+02 0.0085 25.0 6.7 43 396-445 35-77 (84)
135 2jd3_A STBB protein; plasmid s 20.3 62 0.0021 30.7 3.1 45 599-644 52-98 (130)
136 3u1c_A Tropomyosin alpha-1 cha 20.3 4.4E+02 0.015 23.2 14.5 71 311-409 3-73 (101)
137 4dzn_A Coiled-coil peptide CC- 20.0 1.1E+02 0.0038 22.8 3.6 26 72-100 3-28 (33)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.65 E-value=0.00026 Score=65.12 Aligned_cols=37 Identities=5% Similarity=0.117 Sum_probs=19.3
Q ss_pred hHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003941 555 SHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 555 s~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 591 (784)
......+..+...+..+......++..++....+|..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 283 (284)
T 1c1g_A 247 TKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTS 283 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444445555555555556566555555544
No 2
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.45 E-value=1.9e-07 Score=109.65 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHhHH
Q 003941 228 SQTRQLRMELEQQRNKFADVQLKLQ 252 (784)
Q Consensus 228 ~~i~~l~~el~~~~~k~~~~~~~lq 252 (784)
.++++|+.+|++-+.++..++..+.
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ 881 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELK 881 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=98.39 E-value=0.0013 Score=60.40 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=7.8
Q ss_pred HHhhhhhhhhhHHhHHHHH
Q 003941 561 LAEGKGRANKLEEDNAKLR 579 (784)
Q Consensus 561 l~e~K~~~~KL~eDn~kLR 579 (784)
+..+...+.++......+.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~ 278 (284)
T 1c1g_A 260 LYAQKLKYKAISEELDHAL 278 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444333
No 4
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=98.34 E-value=3e-07 Score=108.11 Aligned_cols=32 Identities=6% Similarity=0.186 Sum_probs=14.3
Q ss_pred HHHhhhhhhhHHHhHHHHHhhchHHHHHHhhc
Q 003941 237 LEQQRNKFADVQLKLQEEQRLNESFQDELKSL 268 (784)
Q Consensus 237 l~~~~~k~~~~~~~lqee~k~n~~fqe~l~~l 268 (784)
+..-.+++..++.+|....+.-..+.+++..|
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~L 890 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQL 890 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555544444434444444444
No 5
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.35 E-value=0.031 Score=72.76 Aligned_cols=195 Identities=14% Similarity=0.139 Sum_probs=114.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Q 003941 389 LKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQ 468 (784)
Q Consensus 389 L~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~ 468 (784)
|.++....+++.+||..++.-|-.+..+.++.|+. |..-.++.+..+..+...|..+.+.. .++.
T Consensus 1929 L~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~----i~~~~~~ae~~k~~v~~~~~~~~~~~-----------~ei~ 1993 (3245)
T 3vkg_A 1929 LRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQ----MVQDQQAAEIKQKDARELQVQLDVRN-----------KEIA 1993 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Confidence 77888899999999999999988887766655554 22222345555555555444443321 1222
Q ss_pred hhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHH
Q 003941 469 KSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKE 548 (784)
Q Consensus 469 ~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKe 548 (784)
..+++ -..+|+..+=+ .=|..++..++..| +++ +.+|+.++.+++.|.+.|...+...+.+..||+
T Consensus 1994 ~~k~~---~e~dL~~A~Pa-~Pkr~~l~~ae~~l-------~~~---~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~ 2059 (3245)
T 3vkg_A 1994 VQKVK---AYADLEKAEPT-GPLREEVEQLENAA-------NEL---KLKQDEIVATITALEKSIATYKEEYATLIRETE 2059 (3245)
T ss_dssp HHHHH---HHHCC--------CHHHHHHHHHHHH-------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH---HHHHHhhcCCC-ChHHHHHHHHHHHH-------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 22233333322 23333444444333 333 455566666777777777777777777777887
Q ss_pred HHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHhcCCch
Q 003941 549 EILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQRNHSK 619 (784)
Q Consensus 549 ei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~R~~sK 619 (784)
.+...+...+..+.-+...+..|..+...-.+.+.+--.++.. +|=.-|++--||+|+---...
T Consensus 2060 ~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~-------L~GD~LLaaafisY~G~f~~~ 2123 (3245)
T 3vkg_A 2060 QIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMST-------VVGDVVLASAFLAYIGFFDQN 2123 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHh-------ccHHHHHHHHHHHHcCCCCHH
Confidence 7777777777777777777777887777766665544443333 444457788888898644333
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.06 E-value=0.12 Score=51.58 Aligned_cols=46 Identities=17% Similarity=0.089 Sum_probs=28.4
Q ss_pred HHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHH
Q 003941 465 SEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIE 510 (784)
Q Consensus 465 ~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~E 510 (784)
.||..++..|..|..++.+.|+.++.+..++..++..|....++.+
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666677776666666666555555555443
No 7
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.64 E-value=0.026 Score=66.99 Aligned_cols=91 Identities=23% Similarity=0.303 Sum_probs=35.0
Q ss_pred hhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHH
Q 003941 241 RNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVA 320 (784)
Q Consensus 241 ~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~ 320 (784)
-+|+.+++.+|+++.+.|..++++++.+. .+...|+.+|++++.+.... +.++. .....+.+|...++
T Consensus 927 E~kl~eLq~rL~~~e~~n~~L~~~~~~~~---~~~~~e~~~L~~~l~~le~~----~~e~~-----~~~~~v~~L~~e~~ 994 (1080)
T 2dfs_A 927 ENKIMQLQRKIDEQNKEYKSLLEKMNNLE---ITYSTETEKLRSDVERLRMS----EEEAK-----NATNRVLSLQEEIA 994 (1080)
T ss_dssp ------------------------CHHHH---HHHHHHHHHHHHTHHHHHHH----HHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHH----HHHHH-----HHHHHHHHHHHHHH
Confidence 35677888999999999999999887776 55567777776665544332 22221 11134555555555
Q ss_pred HHHHhhhhhHhhHHHHHHHHHHh
Q 003941 321 TLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 321 ~L~kEn~tlk~~~~eL~a~L~~~ 343 (784)
.|+++...+..++..|+.++..+
T Consensus 995 ~l~~~~~~~~ke~~~lee~~~~~ 1017 (1080)
T 2dfs_A 995 KLRKELHQTQTEKKTIEEWADKY 1017 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554444333
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.24 E-value=0.72 Score=60.61 Aligned_cols=221 Identities=15% Similarity=0.187 Sum_probs=126.9
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCC
Q 003941 277 IEITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDAS 356 (784)
Q Consensus 277 ~~~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~ 356 (784)
.-|-.+|.-..+.- .+...++-|.---++..-++-++.-..-+.+....+..+++.|..-|+.+..|
T Consensus 1866 ~~~~~iH~sv~~~s---~~~~~~~~R~~yvTP~syLeli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et---------- 1932 (3245)
T 3vkg_A 1866 SSLVYIHQTIGEAN---IRLLKRQGRQNYVTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDT---------- 1932 (3245)
T ss_dssp HHHHHHHHHHHHHH---HHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHH---HHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 33445554433321 23444554544445555666666666666666777777888888888888666
Q ss_pred CCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHH
Q 003941 357 EYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNE 436 (784)
Q Consensus 357 e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE 436 (784)
. .+-++|...|..++.+|++...|.+++.+++..=++- +++...+.++..+.++
T Consensus 1933 -----------~----~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~-----------ae~~k~~v~~~~~~~~ 1986 (3245)
T 3vkg_A 1933 -----------E----AQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQA-----------AEIKQKDARELQVQLD 1986 (3245)
T ss_dssp -----------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
T ss_pred -----------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Confidence 0 0345777778888888888877777777666543322 1111122222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhH
Q 003941 437 YQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLE 516 (784)
Q Consensus 437 ~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe 516 (784)
.+...|......+... |..+... .=.++.+..+..+|...++.+.++..+|..|+.-|.+++++-+++ .
T Consensus 1987 ~~~~ei~~~k~~~e~d------L~~A~Pa--~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~---~ 2055 (3245)
T 3vkg_A 1987 VRNKEIAVQKVKAYAD------LEKAEPT--GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATL---I 2055 (3245)
T ss_dssp HHHHHHHHHHHHHHHC------C---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHH------HhhcCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 3333333322222211 1111111 344566677777788888888888888888888888888887664 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHhhhhH
Q 003941 517 RELALAREESAKLSEYLKNADQRAEVSRSEK 547 (784)
Q Consensus 517 ~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEK 547 (784)
+|...++.++......|..|..=|..+..||
T Consensus 2056 ~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek 2086 (3245)
T 3vkg_A 2056 RETEQIKTESSKVKNKVDRSIALLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 5555555666666666666665555555554
No 9
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.67 E-value=2 Score=42.87 Aligned_cols=16 Identities=19% Similarity=0.428 Sum_probs=7.8
Q ss_pred HHHhhHHHHHhhhhhH
Q 003941 466 EIQKSKEIIDGLNNKL 481 (784)
Q Consensus 466 E~~~ske~iedL~~~L 481 (784)
++...++.|.+.+++|
T Consensus 68 ~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 68 TLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444445555555444
No 10
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=95.41 E-value=0.66 Score=46.00 Aligned_cols=165 Identities=15% Similarity=0.206 Sum_probs=79.3
Q ss_pred HHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHH
Q 003941 317 RVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSER 396 (784)
Q Consensus 317 ~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~ 396 (784)
..+.-.+..-..++.++..|++.|.....+ ++ .++ .+||..|..+++.+.++....
T Consensus 10 ee~~ywk~~~~~~~q~~~~le~El~EFqes--Sr--------------ELE--------~ELE~eL~~~Ek~~~~L~~~~ 65 (189)
T 2v71_A 10 EETAYWKELSMKYKQSFQEARDELVEFQEG--SR--------------ELE--------AELEAQLVQAEQRNRDLQADN 65 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--------------HHH--------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--------------HHH--------HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555566666666555444 11 222 367777777777777777778
Q ss_pred HHHHHHHHHHHHHHHHHhhhh---hhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHH
Q 003941 397 DKALQELTRLKQHLIEKAQEE---SEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEI 473 (784)
Q Consensus 397 dKa~kEL~RLRqHLLe~E~Ee---~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~ 473 (784)
.++..|+..+|-.+-....+. ...+.. .|..|+..++.++..|-.||.+ ++++ +......-.-
T Consensus 66 ~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~---el~~l~~~~~~l~~~ireLEq~-------NDdl----Er~~R~~~~S 131 (189)
T 2v71_A 66 QRLKYEVEALKEKLEHQYAQSYKQVSVLED---DLSQTRAIKEQLHKYVRELEQA-------NDDL----ERAKRATIMS 131 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-------HHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH-------hhHH----HHHHHHHHhh
Confidence 888888888777765444332 122222 2555666666666655555542 1111 1111222344
Q ss_pred HHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 003941 474 IDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYL 533 (784)
Q Consensus 474 iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~L 533 (784)
++|+..+|...|+.+-- | ..|.+-++.|..++.+++.++.-|-+.|
T Consensus 132 leD~e~kln~aiEr~al-------L-------E~El~EKe~l~~~~QRLkdE~rDLk~El 177 (189)
T 2v71_A 132 LEDFEQRLNQAIERNAF-------L-------ESELDEKESLLVSVQRLKDEARDLRQEL 177 (189)
T ss_dssp HHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHCCC--------------
T ss_pred HHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555543222 1 2344446666666777776666555544
No 11
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=94.09 E-value=0.15 Score=46.22 Aligned_cols=85 Identities=20% Similarity=0.193 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHH
Q 003941 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDL 389 (784)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL 389 (784)
..+..|+..|+.|+.||+.|...+..|+..|+.. ++-....|+ ..+.- +-..-|..+- .
T Consensus 12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~--~l~Gd~~~~----~TKVl----H~~~NPa~~a-----------~ 70 (100)
T 1go4_E 12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERR--ALQGDYDQS----RTKVL----HMSLNPTSVA-----------R 70 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SCCSCCCTT----TEEEE----EESSCHHHHH-----------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccccCCc----cCeee----eecCChHHHH-----------H
Confidence 5899999999999999999999999999999875 222222222 11111 1111122222 2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhh
Q 003941 390 KETCSERDKALQELTRLKQHLIEKAQ 415 (784)
Q Consensus 390 ~e~~~E~dKa~kEL~RLRqHLLe~E~ 415 (784)
.....+.++++.|+.|||.++-.+++
T Consensus 71 ~~~~~~~e~Lq~E~erLr~~v~~lEe 96 (100)
T 1go4_E 71 QRLREDHSQLQAECERLRGLLRAMER 96 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23346689999999999999877764
No 12
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.62 E-value=1.7 Score=51.90 Aligned_cols=63 Identities=13% Similarity=0.248 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHH
Q 003941 378 MEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLEN 447 (784)
Q Consensus 378 me~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEr 447 (784)
.+..+..|+.++.++..+..++.+|...|.+..-...+ .+. ..+..|..++..+|.++.+|+.
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~----~L~---~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH----ETE---QLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666666666665444322221 111 2344455555555666666553
No 13
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=93.59 E-value=0.3 Score=43.01 Aligned_cols=48 Identities=29% Similarity=0.440 Sum_probs=39.3
Q ss_pred hhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003941 492 NVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEV 542 (784)
Q Consensus 492 nvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~ 542 (784)
++++.|||+||+ +||-|+.-+..||..++..+..+...|++|+.+...
T Consensus 9 ~~~~leLQSALe---aEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~e 56 (81)
T 1wt6_A 9 EVTLRELQEALE---EEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRD 56 (81)
T ss_dssp CCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568899999985 899999999999999999988877777766655443
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.78 E-value=1.8 Score=46.40 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003941 513 GHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 513 ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 591 (784)
+.++.+...++++.+.+...+...++.++...++.+.+-.+....++.+.+.+..+..+++++..+++-+.+-+..+++
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4566666677777777777777777777666556555556666777778888888888888888888888777776655
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=92.63 E-value=1.1 Score=48.09 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHH
Q 003941 516 ERELALAREESAKLSEYLKNADQRAEVSRSEKEEI 550 (784)
Q Consensus 516 e~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei 550 (784)
..++..++++...+...+...+..+...++|.+..
T Consensus 536 ~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44444455555555555555555554444443333
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.16 E-value=10 Score=37.69 Aligned_cols=77 Identities=21% Similarity=0.299 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhcc
Q 003941 516 ERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMS 593 (784)
Q Consensus 516 e~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms 593 (784)
..++..+++....|...|..-.+.-+..-+..-.....|..++..++.+=++.+=|+.|+.- +..|...++||++-.
T Consensus 94 q~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E-Ke~l~~~~QRLkdE~ 170 (189)
T 2v71_A 94 EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE-KESLLVSVQRLKDEA 170 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHCCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 33444444444444444433333333322222223344555666666655555556666654 667777777776643
No 17
>1upt_B Golgi autoantigen, golgin subfamily A member 4; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: a.193.1.1 PDB: 1r4a_E*
Probab=90.14 E-value=0.35 Score=40.61 Aligned_cols=39 Identities=23% Similarity=0.508 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHHhcCCCHHHHHHhhhcc
Q 003941 604 IVIKLLVTYFQRNHSKEVLDLMVRMLGFSDEDKQRIGMAQ 643 (784)
Q Consensus 604 IVtkLLLTYf~R~~sKEVL~LMArMLgFSDEEK~riGL~~ 643 (784)
-+.|+|+.|+.....+.|+..++.+|-||++|.++| +.+
T Consensus 9 YLrNVl~~ym~g~~~~~m~kaI~avL~Fs~~e~q~i-l~~ 47 (60)
T 1upt_B 9 YLRKVLFEYMMGRETKTMAKVITTVLKFPDDQTQKI-LER 47 (60)
T ss_dssp HHHHHHHHHHTTSSHHHHHHHHHHHTTCCHHHHHHH-HHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhCCHHHHHHH-HHH
Confidence 367999999998888899999999999999999999 444
No 18
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=87.12 E-value=4.8 Score=37.80 Aligned_cols=64 Identities=25% Similarity=0.279 Sum_probs=47.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003941 383 QKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLK 450 (784)
Q Consensus 383 ~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK 450 (784)
-.++.+...+..+.+...+|+..||+.|+... .+.++-.+.+++|++++..+..++..||..|.
T Consensus 71 ~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~----~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 71 FKAKKMADSLSLDIENKDKEIYDLKHELIAAQ----IKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666777778899999999988774 46666667778888887777777777776655
No 19
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=84.67 E-value=7.5 Score=35.98 Aligned_cols=32 Identities=19% Similarity=0.235 Sum_probs=20.7
Q ss_pred HHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHH
Q 003941 473 IIDGLNNKLANCMRTIEAKNVELLNLQTALGQ 504 (784)
Q Consensus 473 ~iedL~~~L~~~mealeAKnvEl~NLQtALgq 504 (784)
+|++|+.+|..|-++|..|..+|.+|..=+.+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei~q 56 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQ 56 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777766666666654443
No 20
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=83.87 E-value=1.9 Score=48.54 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=61.1
Q ss_pred HHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHH
Q 003941 318 VVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERD 397 (784)
Q Consensus 318 ~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~d 397 (784)
|--.|-|++.+|+..+++|...|+.+..+. + +. ..-+...++.|+..+.... +.+
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKns--K--------------ds--------eqy~k~~~E~Lr~rq~q~~-dNd 105 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNN--K--------------DS--------HSLTTNIMEILRGDFSSAN-NRD 105 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHH--H--------------HH--------HHHHHHHHHTTSSHHHHHH-HHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhc--h--------------hH--------HHHHHHHHHHHHHHHHhhh-ccc
Confidence 344556677777777888877777774441 1 00 1112333555555566555 556
Q ss_pred HHHHHHH-HHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHH
Q 003941 398 KALQELT-RLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENV 448 (784)
Q Consensus 398 Ka~kEL~-RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEra 448 (784)
-...|+. -||+|+..++. +.++.-..|.-|+..++.|+.+|..||.+
T Consensus 106 NtynE~S~ELRRrIqyLKe----kVdnQlsnIrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 106 NTYNRVSEDLRSRIEVLKR----KVIEKVQHIQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHTTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777 88888877753 45555555666666666666655555553
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=80.68 E-value=6.6 Score=44.32 Aligned_cols=83 Identities=7% Similarity=0.154 Sum_probs=39.7
Q ss_pred hHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhh-HHHHHHHhhhhhhhhh-
Q 003941 494 ELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLS-HSEKMLAEGKGRANKL- 571 (784)
Q Consensus 494 El~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs-~~E~~l~e~K~~~~KL- 571 (784)
...++.++..||-.|. ++.+..+++++...-+.|++-+..|+..+.+ +.||. .+..++..-|.-|.+.
T Consensus 100 q~~dNdNtynE~S~EL------RRrIqyLKekVdnQlsnIrvLQsnLedq~~k----IQRLEvDIdiqirsCKgsCsr~~ 169 (562)
T 3ghg_A 100 SANNRDNTYNRVSEDL------RSRIEVLKRKVIEKVQHIQLLQKNVRAQLVD----MKRLEVDIDIKIRSCRGSCSRAL 169 (562)
T ss_dssp HHHHHHHHHHHTTHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHGGGTBSCCC
T ss_pred hhhccchhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhccccccchh
Confidence 3345555666666555 6666666666554334444444444433322 23332 3333344444444442
Q ss_pred -----HHhHHHHHHHHHHHH
Q 003941 572 -----EEDNAKLRLAVEQSM 586 (784)
Q Consensus 572 -----~eDn~kLR~ALeqsl 586 (784)
.++-+-+-+-|+|.+
T Consensus 170 ~~~vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 170 AREVDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp CCCCCHHHHHHHHHHHHHHH
T ss_pred eeecchHHHHHHHHHHHHHh
Confidence 144555555565554
No 22
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=80.31 E-value=8.3 Score=41.95 Aligned_cols=73 Identities=11% Similarity=0.119 Sum_probs=44.2
Q ss_pred HHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHH
Q 003941 318 VVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERD 397 (784)
Q Consensus 318 ~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~d 397 (784)
+-..|-+.+.+++..+.+|...|..+..+..+ +|. -+-..++.|+..++....--+
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~---------------------~~~---y~~~~~~~lk~~~~q~~dndn 109 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKD---------------------SNT---LTKNIVELMRGDFAKANNNDN 109 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhH---------------------HHH---HHHHHHHHHHHHHHhhccchH
Confidence 34455566688999999999999988666211 111 122224555555555555455
Q ss_pred HHHHHHHHHHHHHHHHh
Q 003941 398 KALQELTRLKQHLIEKA 414 (784)
Q Consensus 398 Ka~kEL~RLRqHLLe~E 414 (784)
...+-..-||+|.+...
T Consensus 110 ~~~e~s~eLe~~i~~lk 126 (390)
T 1deq_A 110 TFKQINEDLRSRIEILR 126 (390)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666667777766653
No 23
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=79.56 E-value=22 Score=34.41 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 393 CSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 452 (784)
Q Consensus 393 ~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~ 452 (784)
+..+..+..|+..|+..+.+.++ .+.+-.+.++.|+.+......+...+|..+..-
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLee----el~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kL 122 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKE----VIALKNKNTERLNAALISGTIENNVLQQKLSDL 122 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888888887764 344446778888888888889999988888765
No 24
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=77.57 E-value=53 Score=31.74 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=23.8
Q ss_pred hhhHHHHHHhh-hHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHH
Q 003941 544 RSEKEEILVKL-SHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRL 589 (784)
Q Consensus 544 ~kEKeei~~KL-s~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL 589 (784)
.+|.+++.+.| ..+-.+-++.+....+++.-+.+|++.|...-.+|
T Consensus 85 e~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l 131 (154)
T 2ocy_A 85 NKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLL 131 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444443 44555555555555555555555555555444433
No 25
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=75.42 E-value=33 Score=31.18 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=25.6
Q ss_pred hchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHH
Q 003941 462 MNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIE 510 (784)
Q Consensus 462 ~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~E 510 (784)
+...+|..++.+|+.+..+= ..-..++.|+|.+++.|..--|
T Consensus 17 ~ye~~I~~LR~qid~~~~e~-------a~l~leldn~~~~~edfk~KyE 58 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDK-------ARVEVERDNLAEDIMRLREKLQ 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhH
Confidence 44456666666666553221 1114578999999999976543
No 26
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=75.14 E-value=28 Score=36.69 Aligned_cols=37 Identities=22% Similarity=0.117 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcC
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSS 347 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~ 347 (784)
.++-.+..+..+++||..++....++..++..++.++
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 436 DWDMYQHKETQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 3556677788888888888888888887777776653
No 27
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.90 E-value=36 Score=35.88 Aligned_cols=30 Identities=17% Similarity=0.147 Sum_probs=15.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003941 385 LEKDLKETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 385 L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 414 (784)
++.+.++.....++..++..-+++.+....
T Consensus 365 l~~~~~~le~~~~~~~~~~~~~~~~~~~~~ 394 (487)
T 3oja_A 365 LEQKKKALDEQVSNGRRAHAELDGTLQQAV 394 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHhh
Confidence 344444444455555555655665554443
No 28
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=74.43 E-value=62 Score=32.39 Aligned_cols=72 Identities=18% Similarity=0.199 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhcc
Q 003941 514 HLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMS 593 (784)
Q Consensus 514 rLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms 593 (784)
.+..++..+..-+=.|+..|.-.+........|+..+..|......++ +|+-.|++
T Consensus 70 ~FigDLekVv~LLLsLs~RLaRvenaL~~~~~Er~sL~~K~~~L~~Q~-----------EDAkeLKe------------- 125 (190)
T 3thf_A 70 THVDAVGNITSLLLSLSERLAQTESSLETRQQERGALESKRDLLYEQM-----------EEAQRLKS------------- 125 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH-------------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHccChhHHHHHHHHHHHHHHHH-----------HHHHHHHH-------------
Confidence 444555555555555666666655555444455555555543333333 44545555
Q ss_pred CCcchhhhHH--HHHHHHHHHHh
Q 003941 594 VDSDFLVDRR--IVIKLLVTYFQ 614 (784)
Q Consensus 594 ~dsD~~VDRR--IVtkLLLTYf~ 614 (784)
+|||| +|+.+|-.|++
T Consensus 126 -----~ldRRe~~V~~iL~~~L~ 143 (190)
T 3thf_A 126 -----DIERRGVSIAGLLAKNLS 143 (190)
T ss_dssp -----HHHHHHHHHHHHHHHHSC
T ss_pred -----HHHHHHHHHHHHHHHhCC
Confidence 45664 78888888887
No 29
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=74.03 E-value=8 Score=36.77 Aligned_cols=87 Identities=21% Similarity=0.195 Sum_probs=36.8
Q ss_pred hhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhh
Q 003941 490 AKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYL-KNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRA 568 (784)
Q Consensus 490 AKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~L-k~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~ 568 (784)
-.+.++.-|+..|.. |.....-.+.+...+..++..||++| .+|+.-+..++++...+-.|..+.+..+.+....+
T Consensus 43 ~~~~e~~~L~~~l~e---E~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll 119 (135)
T 2e7s_A 43 DRDDEVKRLREDIAK---ENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLL 119 (135)
T ss_dssp THHHHHHTHHHHHHH---TTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC
T ss_pred hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544433 22222333455555556666666443 34444444444444444445555555555544444
Q ss_pred hhhHHhHHHHH
Q 003941 569 NKLEEDNAKLR 579 (784)
Q Consensus 569 ~KL~eDn~kLR 579 (784)
..+.....-|+
T Consensus 120 ~~lq~QL~~LK 130 (135)
T 2e7s_A 120 DTLTLQLKNLK 130 (135)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 30
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=71.13 E-value=96 Score=31.71 Aligned_cols=21 Identities=10% Similarity=0.167 Sum_probs=10.8
Q ss_pred hHHhHHHHHHHHHHHHHHHhh
Q 003941 571 LEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 571 L~eDn~kLR~ALeqsl~RL~~ 591 (784)
|...++.||.-|+-....++.
T Consensus 174 l~~~~eeLr~~L~p~ae~lr~ 194 (273)
T 3s84_A 174 ISASAEELRQRLAPLAEDVRG 194 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555543
No 31
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=71.08 E-value=61 Score=29.43 Aligned_cols=28 Identities=36% Similarity=0.292 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003941 514 HLERELALAREESAKLSEYLKNADQRAE 541 (784)
Q Consensus 514 rLe~ELa~aree~a~Ls~~Lk~a~q~ie 541 (784)
+.+.++..++..+..|.+.|..+++.++
T Consensus 72 ~~~~~l~~~q~~i~~lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 72 RGELALKDARNKLAELEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3444445555555555555544444443
No 32
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=71.05 E-value=17 Score=35.61 Aligned_cols=58 Identities=28% Similarity=0.310 Sum_probs=32.5
Q ss_pred hhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccC
Q 003941 214 EKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMD 271 (784)
Q Consensus 214 ~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~ 271 (784)
++...+-+....++.++-.|..+|++||.-..-..-...|=+-++.++++||..++-.
T Consensus 55 ~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~ 112 (168)
T 3o0z_A 55 ERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHN 112 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666666666666666544444333334444566666666555433
No 33
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=70.64 E-value=79 Score=30.56 Aligned_cols=87 Identities=21% Similarity=0.187 Sum_probs=52.0
Q ss_pred hhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhh
Q 003941 491 KNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYL-KNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRAN 569 (784)
Q Consensus 491 KnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~L-k~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~ 569 (784)
.+.++.=|+..| .-|.....-.+.+...+..++..|+++| .+|+--+..++++...+-.|..+.+..+.|....+.
T Consensus 56 ~~~e~~~L~~~l---~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~ 132 (154)
T 2ocy_A 56 RDDEVKRLREDI---AKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLD 132 (154)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555454444 4444444455667777777888888554 456665555566655555677777777777666655
Q ss_pred hhHHhHHHHHH
Q 003941 570 KLEEDNAKLRL 580 (784)
Q Consensus 570 KL~eDn~kLR~ 580 (784)
-+.....-|+.
T Consensus 133 ~lq~ql~~LK~ 143 (154)
T 2ocy_A 133 TLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 34
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=70.48 E-value=34 Score=31.70 Aligned_cols=66 Identities=24% Similarity=0.336 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHH
Q 003941 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDL 389 (784)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL 389 (784)
..+++|++.|+.|+.+...++++.... -.+|...+..|+.+|
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~--------------------------------------v~ql~~~i~~Le~eL 56 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRV--------------------------------------VLQLKGHVSELEADL 56 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------HHHHHHHHHHHHHHH
Confidence 388899999999998888887665433 235666688899999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 003941 390 KETCSERDKALQELTRLKQHLIEK 413 (784)
Q Consensus 390 ~e~~~E~dKa~kEL~RLRqHLLe~ 413 (784)
.++++.++++.-|..+||.-+-+.
T Consensus 57 ~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 57 AEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999765544
No 35
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=69.99 E-value=57 Score=29.76 Aligned_cols=28 Identities=21% Similarity=0.134 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 003941 514 HLERELALAREESAKLSEYLKNADQRAE 541 (784)
Q Consensus 514 rLe~ELa~aree~a~Ls~~Lk~a~q~ie 541 (784)
+...++..++..+..|.+.|..++..++
T Consensus 74 ~~~~~l~~~q~~i~~lE~eL~~~r~em~ 101 (131)
T 3tnu_A 74 RYCMQLAQIQEMIGSVEEQLAQLRCEME 101 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445554444444444433
No 36
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=69.87 E-value=37 Score=37.96 Aligned_cols=107 Identities=9% Similarity=0.168 Sum_probs=76.8
Q ss_pred HHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHH
Q 003941 318 VVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETCSERD 397 (784)
Q Consensus 318 ~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~d 397 (784)
+...|-|.+.+++..+++|.-.|..+..++.+- ..-+-..++.|+..++....--+
T Consensus 52 LqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s------------------------~~y~~~~~~~lk~~~~q~~dndn 107 (491)
T 1m1j_A 52 MQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTS------------------------NRVIVETINILKPGLEGAQQLDE 107 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHH------------------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchH------------------------HHHHHHHHHHHHHHHhhhccchh
Confidence 445677888889999999999999886662221 11233335667777777666667
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 398 KALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 452 (784)
Q Consensus 398 Ka~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~ 452 (784)
...+-..-||.|.+... ++.++.-.-|.-|+..++.++..|..||.+....
T Consensus 108 ~~~e~S~eLe~ri~yIK----~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~q 158 (491)
T 1m1j_A 108 NYGHVSTELRRRIVTLK----QRVATQVNRIKALQNSIQEQVVEMKRLEVDIDIK 158 (491)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888999988884 4667766778888888888888888877766543
No 37
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=69.57 E-value=8 Score=35.15 Aligned_cols=36 Identities=31% Similarity=0.386 Sum_probs=26.8
Q ss_pred CCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 371 SFP-GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 371 sf~-~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHL 410 (784)
+|| .+|+ +..|+.++..+..|++++.+++..|.-.|
T Consensus 6 ~~~~~~e~----~~~lr~ei~~Le~E~~rLr~~~~~LE~~L 42 (100)
T 1go4_E 6 SFLFSREE----ADTLRLKVEELEGERSRLEEEKRMLEAQL 42 (100)
T ss_dssp ---CHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344 4555 68889999999999998888888877764
No 38
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=69.52 E-value=24 Score=30.69 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=21.4
Q ss_pred hhhHhhHHHHHHHHHHHHHH--h--hhhHHHHHHHHHHHHH
Q 003941 492 NVELLNLQTALGQYFAEIEA--K--GHLERELALAREESAK 528 (784)
Q Consensus 492 nvEl~NLQtALgqfqAE~EA--~--ErLe~ELa~aree~a~ 528 (784)
..|+.|++-+++.|..--|. . ...+.++..+|.++..
T Consensus 20 ~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 20 EVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 35888999999988443332 2 2344444555554443
No 39
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=68.26 E-value=28 Score=30.14 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccC-----CCCccCCCCCchhHHHHHHHHH
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLD-----GKMVSSESFPGKEEMEQSLQKL 385 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~-----s~~~~~~sf~~kEeme~sl~~L 385 (784)
....|+..+..+..+...++.++.++...++.+... .+| +.+-...- .+.+ -..+.++.....+
T Consensus 14 ~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l-----~~d-~~vy~~iG~vfv~~~~~-----ea~~~L~~~~e~i 82 (117)
T 2zqm_A 14 QLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESL-----PDD-AVVYKTVGTLIVKTTKD-----KAVAELKEKIETL 82 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-----CTT-CCEEEEETTEEEEECHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCC-cHhHHHhhHHHhhccHH-----HHHHHHHHHHHHH
Confidence 345666677777778888888888888888888444 222 11111110 0122 1344555555566
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003941 386 EKDLKETCSERDKALQELTRLKQHLIE 412 (784)
Q Consensus 386 ~~eL~e~~~E~dKa~kEL~RLRqHLLe 412 (784)
..+++......+...+++..|+.+|-+
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666665543
No 40
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=68.13 E-value=89 Score=30.13 Aligned_cols=53 Identities=26% Similarity=0.352 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 382 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQT 452 (784)
Q Consensus 382 l~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~ 452 (784)
|..|+..|+++..+.|+.-.|..| ++.+. +-..+..+....+|..||..|+..
T Consensus 2 ~~~lE~qlkeaae~ad~KyeEvaR-----~E~dL-------------EraEERae~aE~k~~eLEeeL~~v 54 (155)
T 2efr_A 2 MKQLEDKVEELLSKNYHLENEVAR-----LKKLL-------------ERAEERAELSEGKSAELEEELKTV 54 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHH-----HHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888888888 22221 111124555667777777777754
No 41
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=68.04 E-value=15 Score=33.73 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhh
Q 003941 516 ERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGK 565 (784)
Q Consensus 516 e~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K 565 (784)
..+|+.++.++..|.+.+...+..++...+|...+-.||+.+|...++..
T Consensus 10 ~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQe~~ 59 (106)
T 4e61_A 10 QAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVHTTQ 59 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566677777777888888888999999999999999998843
No 42
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=68.02 E-value=20 Score=32.44 Aligned_cols=35 Identities=17% Similarity=0.155 Sum_probs=21.1
Q ss_pred HHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHH
Q 003941 473 IIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFA 507 (784)
Q Consensus 473 ~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqA 507 (784)
+++.|+.+|..+-+++.+|...|.+|..-+.+-.+
T Consensus 3 ~~~~L~~~L~~aEeaL~~kq~~id~lke~~~q~~~ 37 (94)
T 3jsv_C 3 QLEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKI 37 (94)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 35666666666666777766666666654433333
No 43
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=67.04 E-value=74 Score=28.85 Aligned_cols=48 Identities=25% Similarity=0.225 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhhHHHHhhhhHHHHHHhhhHHHHHHHh
Q 003941 516 ERELALAREESAKLSEYL-KNADQRAEVSRSEKEEILVKLSHSEKMLAE 563 (784)
Q Consensus 516 e~ELa~aree~a~Ls~~L-k~a~q~ie~~~kEKeei~~KLs~~E~~l~e 563 (784)
+.+...+..++..||++| .+|+.-+..++++...+-.|..+.+..+.|
T Consensus 46 E~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 46 EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444444332 334433333334433333444444444443
No 44
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=65.17 E-value=32 Score=31.90 Aligned_cols=81 Identities=23% Similarity=0.263 Sum_probs=42.0
Q ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhH
Q 003941 419 EKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVELLNL 498 (784)
Q Consensus 419 ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl~NL 498 (784)
++++.- .|++|.. ++...|.+|...+. ++..++++|..++..+ ++|.- ..-
T Consensus 19 ~~~~~~--ei~~L~~-------~L~~AEeaL~~Kq~-----------~idelk~ei~q~~~~l----E~I~v-----Lka 69 (110)
T 2v4h_A 19 SHMASM--QLEDLRQ-------QLQQAEEALVAKQE-----------LIDKLKEEAEQHKIVM----ETVPV-----LKA 69 (110)
T ss_dssp CCSSCC--HHHHHHH-------HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH----THHHH-----HHH
T ss_pred hHhhHH--HHHHHHH-------HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH----HHHHH-----HHH
Confidence 455553 5666644 34555666665432 3445555555543333 22222 222
Q ss_pred HHH--HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 003941 499 QTA--LGQYFAEIEAKGHLERELALAREESAK 528 (784)
Q Consensus 499 QtA--LgqfqAE~EA~ErLe~ELa~aree~a~ 528 (784)
|.- =+.|.+|..|.|++-++...+.+.++.
T Consensus 70 Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~ 101 (110)
T 2v4h_A 70 QADIYKADFQAERHAREKLVEKKEYLQEQLEQ 101 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccchhhHHHHHhHHHHHHHHHHH
Confidence 222 256777777776666666665555554
No 45
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=63.09 E-value=83 Score=35.46 Aligned_cols=91 Identities=23% Similarity=0.241 Sum_probs=50.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHH----HHHhHHHH-HHHHHHHHHHHHHHHHHHHH-H
Q 003941 386 EKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEE----LRENNEYQ-RAQILHLENVLKQTLAKQEE-F 459 (784)
Q Consensus 386 ~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeE----LreenE~~-R~~Is~lEraLK~~~a~qee-l 459 (784)
++++.+.+...+.+.+|...|++..-+.+. .|+.+.+.-.| |.+..|.- +..+-+.|+.|...+..|++ +
T Consensus 486 ~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~----~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~~~~~~ 561 (592)
T 1f5n_A 486 EKEIEVERVKAESAQASAKMLHEMQRKNEQ----MMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLL 561 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777777777788888888777655543 34443222221 11111111 12234555555555555444 3
Q ss_pred hhhchHHHHhhHHHHHhhhhh
Q 003941 460 KMMNHSEIQKSKEIIDGLNNK 480 (784)
Q Consensus 460 k~~n~~E~~~ske~iedL~~~ 480 (784)
+..-..+...|+.+|.+|++.
T Consensus 562 ~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 562 KEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 445566777777777777665
No 46
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=61.93 E-value=34 Score=30.28 Aligned_cols=56 Identities=27% Similarity=0.388 Sum_probs=37.7
Q ss_pred HHHHHHHhhhhhhhHH-HhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhccc
Q 003941 233 LRMELEQQRNKFADVQ-LKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRR 303 (784)
Q Consensus 233 l~~el~~~~~k~~~~~-~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~ 303 (784)
|-+|+-.-|-|+.++. -++|-|.|+-- |..++..++..|..|-+||+|||.+|.++
T Consensus 24 L~qEi~~Lr~kv~elEnErlQyEkKLKs---------------TK~El~~Lq~qLe~kd~ei~rL~~~l~~~ 80 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENERNQYEWKLKA---------------TKAEVAQLQEQVALKDAEIERLHSQLSRT 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------hHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 3344444444444443 35677776532 22678888999999999999999999864
No 47
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=60.72 E-value=18 Score=31.34 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=23.5
Q ss_pred HHhhHHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHH
Q 003941 467 IQKSKEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYFA 507 (784)
Q Consensus 467 ~~~ske~iedL~~~L~~~mealeAKnvEl~NLQtALgqfqA 507 (784)
++.-.+.|++|.+ .|..|+.+|.+||+.|..|++
T Consensus 35 Lr~kd~~I~eLEk-------~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 35 LRQRDALIDELEL-------ELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhc
Confidence 4444455666633 456777888899999999865
No 48
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=59.87 E-value=1.3e+02 Score=29.07 Aligned_cols=65 Identities=20% Similarity=0.206 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhcc
Q 003941 522 AREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMS 593 (784)
Q Consensus 522 aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms 593 (784)
..+.+..|+..||+|..+++.+-+.- ...++.+.++-..+..-+..+..+..-|++++..|+.|.
T Consensus 75 yEeqIk~L~~kLKEAE~RAE~AERsv-------~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~ 139 (155)
T 2efr_A 75 YEEEIKVLSDKLKEAETRAEFAERSV-------TKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELL 139 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 44457788899999999987654332 224444444444455556667777788888888888765
No 49
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=59.82 E-value=15 Score=29.71 Aligned_cols=38 Identities=24% Similarity=0.219 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003941 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIE 412 (784)
Q Consensus 375 kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe 412 (784)
.++|+.....|..+-.++..++..+..|+..||+.|++
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~lla 61 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLLA 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45777778888888888888888888888888888763
No 50
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=59.49 E-value=39 Score=28.83 Aligned_cols=88 Identities=16% Similarity=0.247 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccC-----CCCccCCCCCchhHHHHHHHHHH
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLD-----GKMVSSESFPGKEEMEQSLQKLE 386 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~-----s~~~~~~sf~~kEeme~sl~~L~ 386 (784)
...|+..+..+..+...++.++.++.-.++.+... .+| +.+-...- .+.+ -..+.++.....+.
T Consensus 10 f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l-----~~d-~~vy~~iG~vfv~~~~~-----e~~~~L~~~~e~i~ 78 (107)
T 1fxk_A 10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSRA-----ADD-AEVYKSSGNILIRVAKD-----ELTEELQEKLETLQ 78 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-----CTT-CCEEEEETTEEEEECHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCC-chHHHHHhHHHHhccHH-----HHHHHHHHHHHHHH
Confidence 45666777777778888888888888888888544 122 11111111 0111 13445555556666
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 387 KDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 387 ~eL~e~~~E~dKa~kEL~RLRqHL 410 (784)
.+++......+....++..|+.+|
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~~l 102 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666654
No 51
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=59.30 E-value=1.2e+02 Score=28.57 Aligned_cols=42 Identities=21% Similarity=0.209 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHHHhhhHH
Q 003941 499 QTALGQYFAEIEAK---GHLERELALAREESAKLSEYLKNADQRA 540 (784)
Q Consensus 499 QtALgqfqAE~EA~---ErLe~ELa~aree~a~Ls~~Lk~a~q~i 540 (784)
-....-+.|+.|.. -+|+++|.++++-+..-.+.-...++.+
T Consensus 11 eAC~dGLrAq~ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV 55 (121)
T 3mq7_A 11 EAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTV 55 (121)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566666665 4788888888876554433333444443
No 52
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=59.13 E-value=8 Score=28.43 Aligned_cols=29 Identities=38% Similarity=0.591 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHH
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAAL 340 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L 340 (784)
+++|...++.|+.||..||....+|.++.
T Consensus 1 mdqlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 1 MDQLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46788899999999999999999999875
No 53
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=58.50 E-value=1.4e+02 Score=29.25 Aligned_cols=65 Identities=25% Similarity=0.259 Sum_probs=32.6
Q ss_pred hhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHH
Q 003941 492 NVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEK 559 (784)
Q Consensus 492 nvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~ 559 (784)
..++.+||++|++=.+.. -+...-++-+...+..|...|+..+.......-|+..+..+++..|+
T Consensus 68 eke~~~LQa~L~qEr~~r---~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEK 132 (168)
T 3o0z_A 68 DKDYYQLQAILEAERRDR---GHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEK 132 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 448899999998754332 22222222333345555555555554444444444444444444444
No 54
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=58.14 E-value=34 Score=35.72 Aligned_cols=87 Identities=16% Similarity=0.162 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHH
Q 003941 396 RDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIID 475 (784)
Q Consensus 396 ~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~ie 475 (784)
+.+..+++.-+|+.|--.-.+=..++..+ +++||+.+ .-+=..|+ ...+..++
T Consensus 109 r~~L~~dlEelR~~L~Py~~el~~~l~~~---~eelr~kL-------~Py~~EL~-----------------~~~~~~~e 161 (307)
T 2l7b_A 109 QARLGADMEDVCGRLVQYRGEVQAMLGQS---TEELRVRL-------ASHLRKLR-----------------KRLLRDAD 161 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSCC---SHHHHHHH-------HHHHHHHH-----------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-------HHHHHHHH-----------------HHHHhhHH
Confidence 55556677777776444433234444443 44555433 22222233 22334556
Q ss_pred hhhhhHHHhHHHHHhh-hhhHhhHHHHHHHHHHHH
Q 003941 476 GLNNKLANCMRTIEAK-NVELLNLQTALGQYFAEI 509 (784)
Q Consensus 476 dL~~~L~~~mealeAK-nvEl~NLQtALgqfqAE~ 509 (784)
+|+.+|.-..+.+..+ ..-+.+|+..|+=|..+.
T Consensus 162 eLr~~L~py~eeLr~kl~~~veelr~~L~Py~e~~ 196 (307)
T 2l7b_A 162 DLQKRLAVYQAGAREGAERGLSAIRERLGPLVEQG 196 (307)
T ss_dssp HHHHHHHHHTSCCSSHHHHHHHHHHHHCSSSCTTT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 6666666666655554 445567777776654443
No 55
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=57.24 E-value=1e+02 Score=33.68 Aligned_cols=50 Identities=6% Similarity=0.085 Sum_probs=30.7
Q ss_pred HHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003941 487 TIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEV 542 (784)
Q Consensus 487 aleAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~ 542 (784)
.+.-+-.+..+...+..||-.+. +..+.-+++.+..-.+.|+.-+..|+.
T Consensus 96 ~lk~~~~q~~dndn~~~e~s~eL------e~~i~~lk~~V~~q~~~ir~Lq~~l~~ 145 (390)
T 1deq_A 96 LMRGDFAKANNNDNTFKQINEDL------RSRIEILRRKVIEQVQRINLLQKNVRD 145 (390)
T ss_pred HHHHHHHhhccchHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33444446677788888888777 566666666655544455555555444
No 56
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=55.51 E-value=29 Score=28.72 Aligned_cols=63 Identities=17% Similarity=0.296 Sum_probs=35.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHH
Q 003941 219 LAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQM 298 (784)
Q Consensus 219 ~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~ 298 (784)
++-++|+|+.-+.+-|.|++. .|+..+..|...-.+.+.++...+.|+.+=..-|.+|+.
T Consensus 11 l~eiRaQYE~ia~knr~EaE~--------------------~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~ 70 (77)
T 3trt_A 11 MRDVRQQYESVAAKNLQEAEE--------------------WYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTM 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHH--------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444788888888888887775 233333333333333444455555555555555556666
Q ss_pred Hhc
Q 003941 299 ELN 301 (784)
Q Consensus 299 ~l~ 301 (784)
+|.
T Consensus 71 el~ 73 (77)
T 3trt_A 71 EVD 73 (77)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 57
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=55.50 E-value=1.2e+02 Score=31.78 Aligned_cols=82 Identities=17% Similarity=0.167 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHh
Q 003941 498 LQTALGQYFAEIEAKG---HLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEED 574 (784)
Q Consensus 498 LQtALgqfqAE~EA~E---rLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eD 574 (784)
++.+|.++.++.|+.. .|.++|..++.....+...-..+++.+-.+. +.+-+|.+|.++.+.|....+.+|...
T Consensus 382 i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T 3mq9_A 382 ITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALM---ASLDAEKAQGQKKVEELEGEITTLNHK 458 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777776663 5666676666665554443333444322111 112245667677777766666666666
Q ss_pred HHHHHHHH
Q 003941 575 NAKLRLAV 582 (784)
Q Consensus 575 n~kLR~AL 582 (784)
+.-++..+
T Consensus 459 ~~~~~~~~ 466 (471)
T 3mq9_A 459 LQDASAEV 466 (471)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555544
No 58
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=54.27 E-value=19 Score=33.31 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHh
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~ 343 (784)
++.|+.++..|+++...+...+.+|+..+...
T Consensus 8 ~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k 39 (112)
T 1x79_B 8 VKKLQLMLRQANDQLEKTMKDKQELEDFIKQS 39 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444443
No 59
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=53.09 E-value=1.8e+02 Score=28.82 Aligned_cols=117 Identities=17% Similarity=0.281 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003941 376 EEMEQSLQKLEKDLKE-TCSERDKALQELTRLKQHLIEKAQEE-SEKMDEDSKIIEELRENNEYQRAQILHLENVLKQTL 453 (784)
Q Consensus 376 Eeme~sl~~L~~eL~e-~~~E~dKa~kEL~RLRqHLLe~E~Ee-~ekmded~k~IeELreenE~~R~~Is~lEraLK~~~ 453 (784)
+.+...+..|+..|.- +..-+++...++..||..| .++-++ -.++. -..+||++. +..++..+...|.-
T Consensus 51 ~~l~~~~~~l~~~l~p~~ee~~~~l~~~~~~lr~~l-~kd~ee~r~~l~---Py~~el~~~---~~~~~eelr~~L~P-- 121 (243)
T 2a01_A 51 DSVTSTFSKLREQLGPVTQEFWDNLEKETEGLRQEM-SKDLEEVKAKVQ---PYLDDFQKK---WQEEMELYRQKVEP-- 121 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCCSSCSSTTHH---HHHHHHHHH---HHHHHHHHHTTHHH--
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHH---HHHHHHHHH---HHhhHHHHHHHHHH--
Confidence 3444444444444432 2222777888888888884 332211 11111 122334331 12222222222211
Q ss_pred HHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhh-hhhHhhHHHHHHHHHHHH
Q 003941 454 AKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAK-NVELLNLQTALGQYFAEI 509 (784)
Q Consensus 454 a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAK-nvEl~NLQtALgqfqAE~ 509 (784)
....-..+.+..++.|+.+|.-..+.+..+ ..-+.+|+..|+-|-.+.
T Consensus 122 --------~~eel~~~~~~~~eel~~~L~p~~eelr~kl~~~veelk~~l~P~~ee~ 170 (243)
T 2a01_A 122 --------LRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDEL 170 (243)
T ss_dssp --------HHHHHHHHHHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 112223344566666777776666655555 446677777777765555
No 60
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=52.29 E-value=1.5e+02 Score=27.69 Aligned_cols=25 Identities=32% Similarity=0.318 Sum_probs=11.2
Q ss_pred HHHHHHHhhhhhhhhhHHhHHHHHH
Q 003941 556 HSEKMLAEGKGRANKLEEDNAKLRL 580 (784)
Q Consensus 556 ~~E~~l~e~K~~~~KL~eDn~kLR~ 580 (784)
.+.+.+.+++..+..|...+.+|-.
T Consensus 107 ~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 107 SSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 61
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=51.94 E-value=1.1e+02 Score=25.91 Aligned_cols=36 Identities=14% Similarity=0.164 Sum_probs=25.3
Q ss_pred HHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003941 556 HSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 556 ~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 591 (784)
+.+..+..++..+.-|++|..++-..|..+...|..
T Consensus 38 ~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLee 73 (81)
T 1ic2_A 38 QLEDELVALQKKLKGTEDELDKYSESLKDAQEKLEL 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666777777888887788777777754
No 62
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=51.63 E-value=1.4e+02 Score=27.07 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=5.5
Q ss_pred hHHHHHHHHHHHH
Q 003941 515 LERELALAREESA 527 (784)
Q Consensus 515 Le~ELa~aree~a 527 (784)
|+.+|+.++.+.+
T Consensus 87 lE~eL~~~r~e~~ 99 (129)
T 3tnu_B 87 LEEALQKAKQDMA 99 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH
Confidence 3444444444433
No 63
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=51.62 E-value=2.1e+02 Score=29.18 Aligned_cols=74 Identities=20% Similarity=0.203 Sum_probs=37.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhH-HHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHh
Q 003941 512 KGHLERELALAREESAKLSEYLKNADQR-AEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLN 590 (784)
Q Consensus 512 ~ErLe~ELa~aree~a~Ls~~Lk~a~q~-ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~ 590 (784)
.++|...+..+|..+.-.++.++..-.. ++...+..+++.. +....+.+++..+ .=-++-+++||.+-+..|+
T Consensus 171 ~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~~l~~~~~---~~~qq~e~f~~~~---~p~~e~~~~~l~~~~e~l~ 244 (273)
T 3s84_A 171 KARISASAEELRQRLAPLAEDVRGNLRGNTEGLQKSLAELGG---HLDQQVEEFRRRV---EPYGENFNKALVQQMEQLR 244 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHH---HHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHh---HhhHHHHHHHHHHHHHHHH
Confidence 4455555666666666666666554443 2333333222222 3444555555443 3334445666666666554
Q ss_pred h
Q 003941 591 R 591 (784)
Q Consensus 591 ~ 591 (784)
.
T Consensus 245 ~ 245 (273)
T 3s84_A 245 Q 245 (273)
T ss_dssp H
T ss_pred H
Confidence 4
No 64
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=51.49 E-value=1e+02 Score=27.06 Aligned_cols=36 Identities=22% Similarity=0.197 Sum_probs=21.3
Q ss_pred HHHHHhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHH
Q 003941 471 KEIIDGLNNKLANCMRTIEAKNVELLNLQTALGQYF 506 (784)
Q Consensus 471 ke~iedL~~~L~~~mealeAKnvEl~NLQtALgqfq 506 (784)
|++|-.||.+||..++-|..--.+..=|.+=+.+++
T Consensus 8 Ke~mq~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 8 KVELQELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456778999999988766553333333334444443
No 65
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.91 E-value=1.5e+02 Score=26.90 Aligned_cols=38 Identities=21% Similarity=0.331 Sum_probs=18.9
Q ss_pred hhHHHHHHhh-hHHHHHHHhhhhhhhhhHHhHHHHHHHH
Q 003941 545 SEKEEILVKL-SHSEKMLAEGKGRANKLEEDNAKLRLAV 582 (784)
Q Consensus 545 kEKeei~~KL-s~~E~~l~e~K~~~~KL~eDn~kLR~AL 582 (784)
.|.+++.+.| ..+-.|-++.+....+++.-|.+|+.-|
T Consensus 54 ~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL 92 (97)
T 2eqb_B 54 KEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL 92 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443 3445555555555555555555555544
No 66
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=49.08 E-value=1.4e+02 Score=33.52 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=29.1
Q ss_pred HhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 003941 489 EAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEV 542 (784)
Q Consensus 489 eAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~ 542 (784)
.-+-.+..+...+..||-.+. +..+.-+++.+..--+.|+.-+..|+.
T Consensus 96 k~~~~q~~dndn~~~e~S~eL------e~ri~yIK~kVd~qi~~IrvLq~~l~~ 143 (491)
T 1m1j_A 96 KPGLEGAQQLDENYGHVSTEL------RRRIVTLKQRVATQVNRIKALQNSIQE 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333345577788888888777 556666666655433555555555443
No 67
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=46.69 E-value=1.7e+02 Score=28.47 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHhH
Q 003941 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKETC 393 (784)
Q Consensus 314 sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~~ 393 (784)
.+...|..|++|...+...+..|+..|..-.+. .+.+...+..|.-++..+.
T Consensus 65 ~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~----------------------------~e~l~DEl~aLqlq~n~lE 116 (152)
T 3a7p_A 65 ALLNTLAILQKELKSKEQEIRRLKEVIALKNKN----------------------------TERLNAALISGTIENNVLQ 116 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777777777777655332 2233333444444455555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 003941 394 SERDKALQELTRLKQHLIEKAQEESEKM 421 (784)
Q Consensus 394 ~E~dKa~kEL~RLRqHLLe~E~Ee~ekm 421 (784)
....++.+|=..|=++++..-..|-++|
T Consensus 117 ~kl~kLq~EN~~LV~RWM~rk~qEAe~M 144 (152)
T 3a7p_A 117 QKLSDLKKEHSQLVARWLKKTEKETEAM 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555556666543333343
No 68
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=45.96 E-value=2.1e+02 Score=27.65 Aligned_cols=19 Identities=5% Similarity=0.141 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 003941 396 RDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 396 ~dKa~kEL~RLRqHLLe~E 414 (784)
+.+..+++.-||..|.-.-
T Consensus 101 r~~l~kdlEelr~kL~P~~ 119 (191)
T 1nfn_A 101 QARLGADMEDVCGRLVQYR 119 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHH
Confidence 3444666666666654443
No 69
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=45.33 E-value=76 Score=28.93 Aligned_cols=113 Identities=17% Similarity=0.302 Sum_probs=57.7
Q ss_pred HhhHHhhhchhHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHh
Q 003941 208 LADLLEEKNRSLAAERAAYESQTRQLRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELN 287 (784)
Q Consensus 208 ~~d~le~~~~~~aa~qa~~~~~i~~l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ 287 (784)
+-.+...|-..+-.....|...++..|.|+..-|..+..++..++.=...|.++...|..+. .+-.+++..++.-|.
T Consensus 11 aE~~y~~K~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e---~~~~~~l~~~q~~i~ 87 (131)
T 3tnu_A 11 AEEWFFTKTEELNREVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETK---GRYCMQLAQIQEMIG 87 (131)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 33334444444444556677778888888888888899999999988889999988887764 355677777777777
Q ss_pred hhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhh
Q 003941 288 GKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNS 328 (784)
Q Consensus 288 ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~t 328 (784)
..-.+|.++..++.+.-. -.+.|-.+=..|..|..|
T Consensus 88 ~lE~eL~~~r~em~~ql~-----EYq~Ll~vKl~Ld~EIat 123 (131)
T 3tnu_A 88 SVEEQLAQLRCEMEQQNQ-----EYKILLDVKTRLEQEIAT 123 (131)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 777777777776665311 122333334455555555
No 70
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=45.13 E-value=2.3e+02 Score=27.62 Aligned_cols=49 Identities=20% Similarity=0.248 Sum_probs=33.2
Q ss_pred hhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHh
Q 003941 564 GKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQ 614 (784)
Q Consensus 564 ~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~ 614 (784)
.+.+...|..--..+...|+.+..+|..++.|.+.| +-|+.+|++..+.
T Consensus 82 ~~aR~~vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y--~~lL~~Li~eal~ 130 (233)
T 4efa_E 82 NKMRLKVLSAREQSLDGIFEETKEKLSGIANNRDEY--KPILQSLIVEALL 130 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHH--HHHHHHHHHHHHH
Confidence 344555566666677888999999999888555533 5577777766543
No 71
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=44.68 E-value=1.6e+02 Score=28.36 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=41.9
Q ss_pred HHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccC-CcchhhhHHHHHHH
Q 003941 551 LVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSV-DSDFLVDRRIVIKL 608 (784)
Q Consensus 551 ~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~-dsD~~VDRRIVtkL 608 (784)
.+|..|.++...--+.++.||+-++..+.+-|+.+=..|.+.+. ....+||=|=+..|
T Consensus 45 qgKVDQlqKRn~~HQKEi~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrEL 103 (167)
T 4gkw_A 45 QGKVDQLQKRNVAHQKEIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGEL 103 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HhhHHHHHHhccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHH
Confidence 46777777777777778888888888888888888888865443 33467776655544
No 72
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=44.17 E-value=1.9e+02 Score=26.36 Aligned_cols=32 Identities=28% Similarity=0.480 Sum_probs=19.9
Q ss_pred hhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHH
Q 003941 553 KLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQ 584 (784)
Q Consensus 553 KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeq 584 (784)
++...+....++...--|+++++..|++.|+.
T Consensus 91 rleeeee~~~~L~~~kkkle~e~~~Lk~~led 122 (129)
T 2fxo_A 91 RLEDEEEMNAELTAKKRKLEDECSELKRDIDD 122 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666677777777776653
No 73
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=44.07 E-value=2.7e+02 Score=28.17 Aligned_cols=181 Identities=18% Similarity=0.212 Sum_probs=105.0
Q ss_pred HHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccC
Q 003941 284 KELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLD 363 (784)
Q Consensus 284 ~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~ 363 (784)
-||..|+..++..|..-.+ |=+.+..+-.---.+....++|=..+..+-.- .|
T Consensus 7 ~EL~~klE~l~~~q~~Y~~------------L~~~~~~l~~~~~~l~qtq~~lG~~f~~l~~~-----~p---------- 59 (224)
T 1i4d_A 7 LELELQIELLRETKRKYES------------VLQLGRALTAHLYSLLQTQHALGDAFADLSQK-----SP---------- 59 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CG----------
T ss_pred HHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----Cc----------
Confidence 4899999999998876543 44444444444555666666666666554221 11
Q ss_pred CCCccCCCCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHH
Q 003941 364 GKMVSSESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQIL 443 (784)
Q Consensus 364 s~~~~~~sf~~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is 443 (784)
+-++.|...-+.+.++..=...|-.. ......+|..++.+.|.---.-.-+|+.. ..||--.++
T Consensus 60 ---~l~~~f~~~~~~~r~~~k~g~~Ll~~---L~~f~s~l~T~~~kaI~DT~lTIk~ye~a---------R~EY~ay~~- 123 (224)
T 1i4d_A 60 ---ELQEEFGYNAETQKLLCKNGETLLGA---VNFFVSSINTLVTKTMEDTLMTVKQYEAA---------RLEYDAYRT- 123 (224)
T ss_dssp ---GGHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTHHHHHHHHHHHHHHH---------HHHHHHHHH-
T ss_pred ---HHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHhHhccHHHHHHHHHHHH---------hHhHHHHHh-
Confidence 12334555566666655444444444 77778888888877664321111122221 344443332
Q ss_pred HHHHHHHHHHHHHH---HHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhh-----hHhhHHHHHHHHHHHH
Q 003941 444 HLENVLKQTLAKQE---EFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNV-----ELLNLQTALGQYFAEI 509 (784)
Q Consensus 444 ~lEraLK~~~a~qe---elk~~n~~E~~~ske~iedL~~~L~~~mealeAKnv-----El~NLQtALgqfqAE~ 509 (784)
.+| ++...--..+ .++ ......+..++.-+.|+.++..+|+-++++.+ +|.-+++||..|++.-
T Consensus 124 ~~e-e~~~~~~~~~~l~rve-~~q~~~~~ak~kf~kLR~DV~~KleLLd~~r~kv~~~qL~~~~~al~~y~~~~ 195 (224)
T 1i4d_A 124 DLE-ELSLGPRDAGTRGRLE-SAQATFQAHRDKYEKLRGDVAIKLKFLEENKIKVMHKQLLLFHNAVSAYFAGN 195 (224)
T ss_dssp HHH-HHC------------C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHH-HhhcccccccchhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111 1111100000 011 01346678889999999999999999999865 8899999999999876
No 74
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=43.00 E-value=92 Score=27.60 Aligned_cols=23 Identities=26% Similarity=0.114 Sum_probs=12.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Q 003941 430 ELRENNEYQRAQILHLENVLKQT 452 (784)
Q Consensus 430 ELreenE~~R~~Is~lEraLK~~ 452 (784)
+||-..+-+..+-.|+|+.||..
T Consensus 30 ~Lr~kv~elEnErlQyEkKLKsT 52 (81)
T 3qh9_A 30 HLKIKVEELENERNQYEWKLKAT 52 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333444444457778878755
No 75
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=41.53 E-value=49 Score=31.42 Aligned_cols=69 Identities=19% Similarity=0.127 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHH----hHHHHHHHHHHHHHHHHHHHH
Q 003941 382 LQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRE----NNEYQRAQILHLENVLKQTLA 454 (784)
Q Consensus 382 l~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELre----enE~~R~~Is~lEraLK~~~a 454 (784)
+.+|=.+|.+++.-.+.+.++-.+|.-.+...+..-. +-+ ...+++++ .++..+.++..+|.+||-+.+
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~--~~~--~Elee~kqq~~~~~d~L~lQ~esmeaalkmEr~ 76 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQAR--QLE--SEREALQQQHSVQVDQLRMQGQSVEAALRMERQ 76 (130)
T ss_dssp ---------------------------------------------------CTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999998888777764222 111 12345444 588899999999999986644
No 76
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=41.32 E-value=25 Score=27.20 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHH
Q 003941 277 IEITEMRKELNGKLSELRRLQME 299 (784)
Q Consensus 277 ~~~~~~~~el~ek~sei~rlq~~ 299 (784)
.|-+|+|+++..|-.+|.+|+.+
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~e 29 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKE 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999999999999998764
No 77
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.97 E-value=1.4e+02 Score=25.89 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHHHHh
Q 003941 313 ENLKRVVATLEKENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 313 ~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~ 343 (784)
+.++..+..|+.....|+.++..+...|...
T Consensus 13 ~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 13 TTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555666666666666655
No 78
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.53 E-value=66 Score=26.39 Aligned_cols=38 Identities=24% Similarity=0.282 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 003941 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIE 412 (784)
Q Consensus 375 kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe 412 (784)
.++|+...+.|+.+-.++..+.+.+..|+..||+-|++
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e 62 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677777788888788888888888888888877664
No 79
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=39.34 E-value=2.5e+02 Score=26.51 Aligned_cols=78 Identities=24% Similarity=0.187 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhhhHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchh
Q 003941 522 AREESAKLSEYLKNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFL 599 (784)
Q Consensus 522 aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KLs~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~ 599 (784)
.-+.+..|...|+.|+..++.+-+--+++..||...+..+.-...++..++.-+..|..-|...-..|+.+-...+.+
T Consensus 50 deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~eeka 127 (147)
T 2b9c_A 50 DEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVEEL 127 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 334477788889999999888777777788888888888888888888888888888888877777777766555543
No 80
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.98 E-value=29 Score=28.04 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHH
Q 003941 310 DVVENLKRVVATLEKENNSLKMEKTELVAALE 341 (784)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~ 341 (784)
.-++.||..++.|+.++..|+.+..+|.+.|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677777777777777777777777777664
No 81
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=38.00 E-value=2.5e+02 Score=26.00 Aligned_cols=24 Identities=25% Similarity=0.255 Sum_probs=17.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHh
Q 003941 390 KETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 390 ~e~~~E~dKa~kEL~RLRqHLLe~E 414 (784)
-++|...++++-++..|+.. |.++
T Consensus 2 ~~t~~~~~~lq~~~~ql~~q-L~k~ 25 (112)
T 1x79_B 2 AETRDQVKKLQLMLRQANDQ-LEKT 25 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred cchHHHHHHHHHHHHHHHHH-HHHH
Confidence 46788888888888888875 4443
No 82
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=37.68 E-value=62 Score=27.92 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=33.3
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 374 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 374 ~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHL 410 (784)
.+-+||..++.|+..|.++++++++...||.++=+-|
T Consensus 15 ~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~L 51 (72)
T 3cve_A 15 RNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEIL 51 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3668999999999999999999999999999987764
No 83
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=37.59 E-value=60 Score=28.39 Aligned_cols=37 Identities=35% Similarity=0.542 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 374 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 374 ~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHL 410 (784)
.+-+||..++.|+..|.+++++++++..||.+|=+-|
T Consensus 21 rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 21 RNAELEHQLRAMERSLEEARAERERARAEVGRAAQLL 57 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3668999999999999999999999999999987764
No 84
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=37.41 E-value=27 Score=28.30 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003941 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLI 411 (784)
Q Consensus 375 kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLL 411 (784)
.++|+..+..|..+-.++..++..+..|+..||+.|+
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666777777777777777777777777777665
No 85
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=37.16 E-value=55 Score=36.55 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=14.8
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHhhccC
Q 003941 567 RANKLEEDNAKLRLAVEQSMTRLNRMSV 594 (784)
Q Consensus 567 ~~~KL~eDn~kLR~ALeqsl~RL~~ms~ 594 (784)
+..+++.++...|+++.++-.+|...+.
T Consensus 434 e~~~~~~~~~~a~~~~~~~~~~l~~~~~ 461 (575)
T 2i1j_A 434 ETRRLQEEVEDARRKQDEAAAALLAATT 461 (575)
T ss_dssp --------CHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4456777777788888888888866443
No 86
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.07 E-value=28 Score=28.13 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 317 RVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 317 ~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
..++.|+.||.+|+.++.+|.+.+..+++.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999888764
No 87
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=36.70 E-value=1.7e+02 Score=25.22 Aligned_cols=64 Identities=25% Similarity=0.324 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHHHh
Q 003941 313 ENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLKET 392 (784)
Q Consensus 313 ~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~e~ 392 (784)
.++-.-+..++.+|.+|+.+...|+..|+.++.. . ..++.+|+-.
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~------------------------------q-----~~~~~Elk~~ 47 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSE------------------------------Q-----DAFRSNLKTL 47 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------H-----HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH------------------------------H-----HHHHHHHHHH
Confidence 3566778889999999999999999999988433 1 2344455555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003941 393 CSERDKALQELTRLKQHLI 411 (784)
Q Consensus 393 ~~E~dKa~kEL~RLRqHLL 411 (784)
..-.|=.-.||.-||+-|-
T Consensus 48 ~e~Ld~KI~eL~elrq~La 66 (72)
T 3cve_A 48 LEILDGKIFELTELRDNLA 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5556777777888887753
No 88
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=36.60 E-value=46 Score=37.15 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=28.4
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 003941 374 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 374 ~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqH 409 (784)
..|++|.....|+..|.....|..++..+|.+--..
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 364 (575)
T 2i1j_A 329 ARERAEKKQQEYQDRLRQMQEEMERSQANLLEAQDM 364 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 578888888888888888888888888887665443
No 89
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=35.50 E-value=2.6e+02 Score=25.45 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 003941 435 NEYQRAQILHLENVLKQTLAKQEE 458 (784)
Q Consensus 435 nE~~R~~Is~lEraLK~~~a~qee 458 (784)
++.....-..||..|+-...+.++
T Consensus 71 ~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 71 CDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555544444444
No 90
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=33.83 E-value=2.7e+02 Score=27.14 Aligned_cols=103 Identities=10% Similarity=0.119 Sum_probs=48.5
Q ss_pred HhhhhhHHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHhh
Q 003941 475 DGLNNKLANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQRAEVSRSEKEEILVKL 554 (784)
Q Consensus 475 edL~~~L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEKeei~~KL 554 (784)
..|.++|+.|..-+++.-.--.||. +.|+.-.+.+.....-...+ + -.++.++..++.+.+..+.+..||
T Consensus 23 ~qL~nrla~~~am~~sqqq~~eqlS---~eFqtal~eAq~Atd~ye~a---i----~n~~sA~~~~d~lekKl~~aq~kL 92 (158)
T 3tul_A 23 SQLESRLAVWQAMIESQKEMGIQVS---KEFQTALGEAQEATDLYEAS---I----KKTDTAKSVYDAATKKLTQAQNKL 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--C---CTHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---h----cccchHHHHHHHHHHHHHHHHHHH
Confidence 4566777777666666433222221 23443333322111111111 1 124445555554433333444444
Q ss_pred hHHH---HHHHhhhhhhhhhHHhHHHHHHHHHHHHH
Q 003941 555 SHSE---KMLAEGKGRANKLEEDNAKLRLAVEQSMT 587 (784)
Q Consensus 555 s~~E---~~l~e~K~~~~KL~eDn~kLR~ALeqsl~ 587 (784)
++.. =.++..+..+..+..|+..+++.++.+.-
T Consensus 93 ~~L~P~~P~Yak~~a~~~q~~~d~~~~~~~~~kA~~ 128 (158)
T 3tul_A 93 QSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATD 128 (158)
T ss_dssp TTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 23555666777788888888888877654
No 91
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=33.69 E-value=4e+02 Score=27.79 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHh
Q 003941 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELREN 434 (784)
Q Consensus 375 kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELree 434 (784)
-|++...|.-+-.+| +++..+.+..||.+|--.-++=-.+++.. ++||+..
T Consensus 138 ~eelr~kL~Py~~EL------~~~~~~~~eeLr~~L~py~eeLr~kl~~~---veelr~~ 188 (307)
T 2l7b_A 138 TEELRVRLASHLRKL------RKRLLRDADDLQKRLAVYQAGAREGAERG---LSAIRER 188 (307)
T ss_dssp SHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHTSCCSSHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHH------HHHHHhhHHHHHHHHhhHHHHHHHHHHHH---HHHHHHH
Confidence 457766666666665 56788888889998766544334555554 5666653
No 92
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=32.95 E-value=2.8e+02 Score=25.09 Aligned_cols=34 Identities=12% Similarity=0.324 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 377 eme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHL 410 (784)
-.+..+..|++.|..+..++.++.-|+..++--+
T Consensus 17 ~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~ 50 (119)
T 3ol1_A 17 LYEEEMRELRRQVDQLTNDKARVEVERDNLAEDI 50 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999999887654
No 93
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=32.70 E-value=78 Score=28.04 Aligned_cols=47 Identities=21% Similarity=0.310 Sum_probs=36.0
Q ss_pred HHHHhHHHHHH---HHHHHHHhhhhhhhHHHhHHHHHhhchHHHHHHhhc
Q 003941 222 ERAAYESQTRQ---LRMELEQQRNKFADVQLKLQEEQRLNESFQDELKSL 268 (784)
Q Consensus 222 ~qa~~~~~i~~---l~~el~~~~~k~~~~~~~lqee~k~n~~fqe~l~~l 268 (784)
.|..++.+|+- +..||.+-|.-.-+++-+|+|=.++|..++.|+..|
T Consensus 15 LQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l 64 (81)
T 1wt6_A 15 LQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQL 64 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666666642 566888888888889999999999999998775443
No 94
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=31.00 E-value=2.8e+02 Score=25.66 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=10.6
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 003941 426 KIIEELRENNEYQRAQILH 444 (784)
Q Consensus 426 k~IeELreenE~~R~~Is~ 444 (784)
.+|+.|.-+++.++.++..
T Consensus 15 ~~Ie~Lkreie~lk~ele~ 33 (120)
T 3i00_A 15 HLIERLYREISGLKAQLEN 33 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5566666666555554433
No 95
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=30.85 E-value=62 Score=26.53 Aligned_cols=34 Identities=26% Similarity=0.315 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhh
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~ 345 (784)
.+.|...++.|+.+|..|+.++..|...+..++.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777777776666543
No 96
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=30.76 E-value=2.6e+02 Score=24.08 Aligned_cols=38 Identities=18% Similarity=0.235 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003941 377 EMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 377 eme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 414 (784)
+++..++.++..|..++..+.....++..|+.-+-..+
T Consensus 7 ~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~ 44 (112)
T 1l8d_A 7 ELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELK 44 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455666667777777777777777777776654443
No 97
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=30.24 E-value=4.9e+02 Score=27.15 Aligned_cols=48 Identities=17% Similarity=0.249 Sum_probs=26.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhH
Q 003941 431 LRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCM 485 (784)
Q Consensus 431 LreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~m 485 (784)
+|.....|-..|..|...|.+.++.++ ..|+.+..+|..|+++|.+..
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 463 (471)
T 3mq9_A 416 VEAQAATANHTVMALMASLDAEKAQGQ-------KKVEELEGEITTLNHKLQDAS 463 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 333445556667777777777666533 134444455555555554443
No 98
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.14 E-value=65 Score=26.05 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhc
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKS 346 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t 346 (784)
-+..|...++.|+.+|..|..++..|...+..++.-
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~ 58 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQK 58 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888889999999888888888877643
No 99
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=29.69 E-value=3.6e+02 Score=25.40 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhhhhhHHHhHHHHHhhhhhH
Q 003941 435 NEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGLNNKLANCMRTIEAKNVEL 495 (784)
Q Consensus 435 nE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL~~~L~~~mealeAKnvEl 495 (784)
.-.+-..+..|-..|+++.+.. ...++.+..+|.+|+++|.+..+.++....+.
T Consensus 48 AaTCNqTV~tL~~SL~~ekaq~-------q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 48 AATANHTVMALMASLDAEKAQG-------QKKVEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455666777777888776653 23578888999999999988776666544443
No 100
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.49 E-value=2.1e+02 Score=27.26 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=39.1
Q ss_pred HHhhhhHHHHHHhh-hHHHHHHHhhhhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 003941 541 EVSRSEKEEILVKL-SHSEKMLAEGKGRANKLEEDNAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 541 e~~~kEKeei~~KL-s~~E~~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~~ 591 (784)
.....|.+++.+.| ..+-.+-++.+....+++.-+.+|++.|...-.+|..
T Consensus 70 ~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~e~ll~~ 121 (135)
T 2e7s_A 70 DKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDT 121 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTHHHHCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457888888775 6888899999988899999999999988776555544
No 101
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=29.46 E-value=1.2e+02 Score=24.65 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 003941 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLI 411 (784)
Q Consensus 375 kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLL 411 (784)
.++|+.....|+.+-.++..+++.+..|+..|++-|+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666666666666666666666666666666654
No 102
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=29.22 E-value=68 Score=27.79 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=33.2
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcC
Q 003941 279 ITEMRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSS 347 (784)
Q Consensus 279 ~~~~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~ 347 (784)
+.++...|..|..||+..+ ..|+.|+++...+...+.+|...|...|+.+
T Consensus 21 i~eLq~~L~~K~eELr~kd-------------------~~I~eLEk~L~ekd~eI~~LqseLDKfrSVl 70 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRD-------------------ALIDELELELDQKDELIQMLQNELDKYRSVI 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 5566666666666665443 4566777777777777777777777776543
No 103
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=28.79 E-value=65 Score=26.27 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhh
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNRK 345 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~ 345 (784)
+..|...++.|+++|..|..++..|...+..++.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~ 58 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777777776666665543
No 104
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=28.78 E-value=3.7e+02 Score=25.20 Aligned_cols=46 Identities=11% Similarity=0.099 Sum_probs=32.6
Q ss_pred hhhhhhHHhHHHHHHHHHHHHHHHhhccCCcchhhhHHHHHHHHHHHHh
Q 003941 566 GRANKLEEDNAKLRLAVEQSMTRLNRMSVDSDFLVDRRIVIKLLVTYFQ 614 (784)
Q Consensus 566 ~~~~KL~eDn~kLR~ALeqsl~RL~~ms~dsD~~VDRRIVtkLLLTYf~ 614 (784)
.+...|.-...-+...++.+..+|..++.+.+ -+.++.+|++..+.
T Consensus 67 ~r~~~L~ar~eli~~v~~~a~~~L~~~~~~~~---Y~~~L~~Li~ea~~ 112 (187)
T 3v6i_A 67 VATARTQARGEVLEEVRRRVREALEALPQKPE---WPEVVRKLALEALE 112 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTT---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCcc---HHHHHHHHHHHHHH
Confidence 34445556666778889999999999885532 26788888887654
No 105
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=28.43 E-value=2.4e+02 Score=24.73 Aligned_cols=30 Identities=17% Similarity=0.247 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 003941 498 LQTALGQYFAEIEAKGHLERELALAREESA 527 (784)
Q Consensus 498 LQtALgqfqAE~EA~ErLe~ELa~aree~a 527 (784)
|+-.++|++||+++-.+-+.||..-+..+.
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~ 45 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLE 45 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHH
Confidence 566789999999887666666665554443
No 106
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=28.32 E-value=92 Score=27.81 Aligned_cols=37 Identities=16% Similarity=0.174 Sum_probs=32.7
Q ss_pred chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 003941 374 GKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHL 410 (784)
Q Consensus 374 ~kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHL 410 (784)
++++||.....|..++..+..|..+..+|++.+|+.+
T Consensus 49 q~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~ 85 (90)
T 2wt7_B 49 QKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKS 85 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888999999999999999999999999998875
No 107
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=28.31 E-value=3.9e+02 Score=25.30 Aligned_cols=41 Identities=20% Similarity=0.320 Sum_probs=26.0
Q ss_pred hhHHHHHhhhhhHHHhHHHHHhh-hhhHhhHHHHHHHHHHHH
Q 003941 469 KSKEIIDGLNNKLANCMRTIEAK-NVELLNLQTALGQYFAEI 509 (784)
Q Consensus 469 ~ske~iedL~~~L~~~mealeAK-nvEl~NLQtALgqfqAE~ 509 (784)
..+..++.|+.+|.-..+.+..+ ..-+.+|++.|.=|-.+.
T Consensus 130 ~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~l~Py~ee~ 171 (185)
T 3r2p_A 130 GARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDEL 171 (185)
T ss_dssp HHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 34456667777777666666555 345667777777776655
No 108
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.04 E-value=1.3e+02 Score=24.45 Aligned_cols=33 Identities=33% Similarity=0.316 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhH
Q 003941 515 LERELALAREESAKLSEYLKNADQRAEVSRSEK 547 (784)
Q Consensus 515 Le~ELa~aree~a~Ls~~Lk~a~q~ie~~~kEK 547 (784)
|.+++..+-..+.+|++.|+.|.+.|..++.+-
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666677778888888888888887766553
No 109
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=27.39 E-value=3.1e+02 Score=23.93 Aligned_cols=19 Identities=11% Similarity=0.045 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 003941 516 ERELALAREESAKLSEYLK 534 (784)
Q Consensus 516 e~ELa~aree~a~Ls~~Lk 534 (784)
+.++..++..+..|...|.
T Consensus 43 E~ei~sL~kKiq~lE~eld 61 (101)
T 3u59_A 43 EEEQQGLQKKLKGTEDEVE 61 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444433333333
No 110
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=27.19 E-value=87 Score=27.32 Aligned_cols=52 Identities=31% Similarity=0.377 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHhcccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 003941 282 MRKELNGKLSELRRLQMELNRREDGDANDVVENLKRVVATLEKENNSLKMEKTELVA 338 (784)
Q Consensus 282 ~~~el~ek~sei~rlq~~l~~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a 338 (784)
+++||-+|-.||++|+..+.- -+--+++|--.|-.|-=||+-|......|.+
T Consensus 23 Lr~eL~~Ke~eI~~L~e~i~l-----k~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 23 LQKELKSKEQEIRRLKEVIAL-----KNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHH-----hcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
No 111
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=26.78 E-value=3.1e+02 Score=23.75 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 003941 575 NAKLRLAVEQSMTRLNR 591 (784)
Q Consensus 575 n~kLR~ALeqsl~RL~~ 591 (784)
...|++.|.+.|..++.
T Consensus 97 ~~~L~~kf~e~m~~y~~ 113 (127)
T 1ez3_A 97 HSTLSRKFVEVMSEYNA 113 (127)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555555555555
No 112
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.71 E-value=83 Score=25.30 Aligned_cols=33 Identities=24% Similarity=0.291 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhh
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (784)
++.|...+..|+.+|..|..++..|...+..++
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777777766666654
No 113
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=26.59 E-value=1.2e+02 Score=26.74 Aligned_cols=40 Identities=13% Similarity=0.189 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Q 003941 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKA 414 (784)
Q Consensus 375 kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRqHLLe~E 414 (784)
..+|+.....|+.+=..++.+++.+.+|+..||+-|+..-
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p 77 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLP 77 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 4567777888888888888888888888888888877643
No 114
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=26.43 E-value=4.3e+02 Score=25.37 Aligned_cols=21 Identities=14% Similarity=0.365 Sum_probs=14.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 003941 389 LKETCSERDKALQELTRLKQH 409 (784)
Q Consensus 389 L~e~~~E~dKa~kEL~RLRqH 409 (784)
|+-...+.+.+.+||..|..|
T Consensus 56 l~~v~kdi~~a~~eL~~m~~~ 76 (141)
T 3okq_A 56 LETVSKDLENAQADVLKLQEF 76 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444566677888888888
No 115
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=26.28 E-value=1.8e+02 Score=29.06 Aligned_cols=23 Identities=9% Similarity=-0.031 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Q 003941 377 EMEQSLQKLEKDLKETCSERDKA 399 (784)
Q Consensus 377 eme~sl~~L~~eL~e~~~E~dKa 399 (784)
+++..+..++.+|..++.+...+
T Consensus 67 ~~~~~l~~~~a~l~~~~a~l~~a 89 (369)
T 4dk0_A 67 TQINTLNTRKAALASYQAQLVAR 89 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443333
No 116
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=25.62 E-value=69 Score=28.25 Aligned_cols=62 Identities=19% Similarity=0.229 Sum_probs=0.0
Q ss_pred hhhHHHhHHHHHhhchHHHHHHhhcccCccchhhHHHHHHHHHhhhHHHHHHHHHHhccccc
Q 003941 244 FADVQLKLQEEQRLNESFQDELKSLKMDKDKTSIEITEMRKELNGKLSELRRLQMELNRRED 305 (784)
Q Consensus 244 ~~~~~~~lqee~k~n~~fqe~l~~lk~~~~kts~~~~~~~~el~ek~sei~rlq~~l~~~e~ 305 (784)
+..+..|.|.=-.--..+|.|+..||.....-+.+...++..-.....++.+|+.+.+.+++
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~ 69 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQE 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
No 117
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=25.37 E-value=6.2e+02 Score=28.58 Aligned_cols=9 Identities=33% Similarity=0.693 Sum_probs=4.1
Q ss_pred HHHHHHHHH
Q 003941 501 ALGQYFAEI 509 (784)
Q Consensus 501 ALgqfqAE~ 509 (784)
.|.+|+.+.
T Consensus 67 ~l~kY~~dl 75 (497)
T 3iox_A 67 KLAKYQADL 75 (497)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 118
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=25.16 E-value=5.7e+02 Score=28.41 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=9.3
Q ss_pred HhhhhhHhhHHHHHHHHHHh
Q 003941 324 KENNSLKMEKTELVAALEKN 343 (784)
Q Consensus 324 kEn~tlk~~~~eL~a~L~~~ 343 (784)
+...+.+..+.+|+-.|.++
T Consensus 93 k~q~~V~~~LqeLe~~l~~l 112 (464)
T 1m1j_B 93 KQEKTVKPVLRDLKDRVAKF 112 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhHhHHHHHHHHHHHH
Confidence 33444444444555444444
No 119
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=25.14 E-value=5.9e+02 Score=28.32 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHH
Q 003941 310 DVVENLKRVVATLEKENNSLKMEKTELVAA 339 (784)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~ 339 (784)
..+..|+.+++.|+.....|+..+..+...
T Consensus 168 ~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~ 197 (464)
T 1m1j_B 168 SSLRVLRAVIDSLHKKIQKLENAIATQTDY 197 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 355566666666666666666655554443
No 120
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=24.91 E-value=3.6e+02 Score=23.75 Aligned_cols=27 Identities=33% Similarity=0.235 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhhhhHhhHHHHHH
Q 003941 312 VENLKRVVATLEKENNSLKMEKTELVA 338 (784)
Q Consensus 312 ~~sLk~~~~~L~kEn~tlk~~~~eL~a 338 (784)
+...-+.+++|-+||+.|...++.|+-
T Consensus 4 ~~gmgkevEnLi~EN~eLl~TKNaLnv 30 (77)
T 2w83_C 4 PEFMGREVENLILENTQLLETKNALNI 30 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667888888888888888777653
No 121
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=24.74 E-value=4.5e+02 Score=24.85 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=8.5
Q ss_pred hHhhHHHHHHHHHHHH
Q 003941 494 ELLNLQTALGQYFAEI 509 (784)
Q Consensus 494 El~NLQtALgqfqAE~ 509 (784)
.+..|+..|.-|--+.
T Consensus 134 ~~e~Lr~~L~p~~e~l 149 (185)
T 3r2p_A 134 KLHELQEKLSPLGEEM 149 (185)
T ss_dssp HHTTTTTTSHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3445555566665544
No 122
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=23.78 E-value=8.3e+02 Score=27.61 Aligned_cols=56 Identities=23% Similarity=0.190 Sum_probs=24.3
Q ss_pred HHHhHHHHHhhhhhHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 003941 481 LANCMRTIEAKNVELLNLQTALGQYFAEIEAKGHLERELALAREESAKLSEYLKNADQ 538 (784)
Q Consensus 481 L~~~mealeAKnvEl~NLQtALgqfqAE~EA~ErLe~ELa~aree~a~Ls~~Lk~a~q 538 (784)
-...++.+.++|.+|.==..|+.+.+++-.| --+.+|+.-.+++++--..+++++.
T Consensus 32 Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka--~Ye~~l~kY~~dlakY~~~~AeY~~ 87 (497)
T 3iox_A 32 YEAAVAANNAANAALTAENTAIKKRNADAKA--DYEAKLAKYQADLAKYQKDLADYPV 87 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555554444455555444322 2333344444444443333333333
No 123
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=23.71 E-value=3.8e+02 Score=23.61 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=7.1
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 003941 389 LKETCSERDKALQELTRLK 407 (784)
Q Consensus 389 L~e~~~E~dKa~kEL~RLR 407 (784)
|+++-.++..+..||..|+
T Consensus 27 L~~lEke~~~l~~el~~le 45 (96)
T 3q8t_A 27 LEDVEKNRKVVAENLEKVQ 45 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHH
Confidence 3333333333333333333
No 124
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=23.52 E-value=96 Score=26.82 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcC
Q 003941 313 ENLKRVVATLEKENNSLKMEKTELVAALEKNRKSS 347 (784)
Q Consensus 313 ~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~ 347 (784)
..+...+..|++||..|+.++..|...+..+|.-+
T Consensus 39 ~e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788889999999999999999998887654
No 125
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=23.46 E-value=62 Score=25.78 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=20.0
Q ss_pred chHHHHHHHHHHHHHHhhhhhHhh
Q 003941 309 NDVVENLKRVVATLEKENNSLKME 332 (784)
Q Consensus 309 ~~~~~sLk~~~~~L~kEn~tlk~~ 332 (784)
+..|.+|...++.|+.||.|||..
T Consensus 2 snlvaqlenevaslenenetlkkk 25 (49)
T 3he5_A 2 SNLVAQLENEVASLENENETLKKK 25 (49)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhhcccHHHHHh
Confidence 457889999999999999998753
No 126
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=22.91 E-value=91 Score=27.52 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcC
Q 003941 314 NLKRVVATLEKENNSLKMEKTELVAALEKNRKSS 347 (784)
Q Consensus 314 sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~ 347 (784)
.+...++.|++||..|+.++..|...+..++.-+
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777777777777776553
No 127
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=22.18 E-value=3e+02 Score=26.45 Aligned_cols=34 Identities=12% Similarity=0.192 Sum_probs=27.4
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 003941 375 KEEMEQSLQKLEKDLKETCSERDKALQELTRLKQ 408 (784)
Q Consensus 375 kEeme~sl~~L~~eL~e~~~E~dKa~kEL~RLRq 408 (784)
..+++..+..++.+|..+..+.+.+..++.|.+.
T Consensus 55 ~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~ 88 (277)
T 2f1m_A 55 PATYQATYDSAKGDLAKAQAAANIAQLTVNRYQK 88 (277)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778888888888888888888888888764
No 128
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=21.56 E-value=31 Score=27.86 Aligned_cols=39 Identities=10% Similarity=0.284 Sum_probs=27.8
Q ss_pred ccccCCcchHHHHHHHHHHHHHHhhhhhHhhHHHHHHHH
Q 003941 302 RREDGDANDVVENLKRVVATLEKENNSLKMEKTELVAAL 340 (784)
Q Consensus 302 ~~e~e~~~~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L 340 (784)
|-...++++-++.+-..++.|.+||..|+.+...|+.+|
T Consensus 19 GY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 19 GYDEDEVNEFLAQVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 444455667888999999999999999999988887654
No 129
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=21.06 E-value=4.4e+02 Score=23.38 Aligned_cols=31 Identities=10% Similarity=0.007 Sum_probs=14.8
Q ss_pred HHHhhhhhhhhhHHhHHHHHHHHHHHHHHHh
Q 003941 560 MLAEGKGRANKLEEDNAKLRLAVEQSMTRLN 590 (784)
Q Consensus 560 ~l~e~K~~~~KL~eDn~kLR~ALeqsl~RL~ 590 (784)
....+...+.++..+...++..++.-...|+
T Consensus 96 r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 96 QKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555544444443
No 130
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=20.87 E-value=1.1e+02 Score=25.62 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhh
Q 003941 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNR 344 (784)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r 344 (784)
+-+..|+..+..|+.+...|+.+...|.+.|..+.
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L~ 81 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRALG 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667777777777788888888888887776653
No 131
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=20.67 E-value=3.2e+02 Score=27.04 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 003941 377 EMEQSLQKLEKDLKETCSERDKALQEL 403 (784)
Q Consensus 377 eme~sl~~L~~eL~e~~~E~dKa~kEL 403 (784)
+++..+..++.+|..++.+.+.+..+|
T Consensus 66 ~~~~~~~~~~a~l~~~~a~l~~a~~~~ 92 (341)
T 3fpp_A 66 QAENQIKEVEATLMELRAQRQQAEAEL 92 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544444444444333
No 132
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=20.63 E-value=3.8e+02 Score=28.77 Aligned_cols=46 Identities=24% Similarity=0.112 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCC
Q 003941 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDA 355 (784)
Q Consensus 310 ~~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da 355 (784)
+-.+.|+.....|.++...++.+..+++++|...=.+.|+-+.+++
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~v 109 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGA 109 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 4567888899999999999999999999999999888888877664
No 133
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.55 E-value=2.4e+02 Score=22.88 Aligned_cols=37 Identities=22% Similarity=0.241 Sum_probs=20.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHhhHHHHHhh
Q 003941 430 ELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEIIDGL 477 (784)
Q Consensus 430 ELreenE~~R~~Is~lEraLK~~~a~qeelk~~n~~E~~~ske~iedL 477 (784)
+|+..+...-++-..|..+|+.+.. +|..+++++++|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~-----------el~~Lkeele~L 49 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQ-----------QLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHh
Confidence 4444455555555555666665533 355666766666
No 134
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.38 E-value=2.5e+02 Score=24.96 Aligned_cols=43 Identities=30% Similarity=0.444 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhHHHHHHHHHHH
Q 003941 396 RDKALQELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHL 445 (784)
Q Consensus 396 ~dKa~kEL~RLRqHLLe~E~Ee~ekmded~k~IeELreenE~~R~~Is~l 445 (784)
+.+-..-|..||.||++. ++--.+.|++|...+++++..|..|
T Consensus 35 rqkekEqL~~LKkkl~~e-------l~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 35 RARAKEQLAALKKHKENE-------ISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445567789887322 2222334555555555555544443
No 135
>2jd3_A STBB protein; plasmid segregation, actin-like filaments, RHH2, PARM, plasmid, DNA binding, DNA binding protein; 2.8A {Escherichia coli}
Probab=20.31 E-value=62 Score=30.69 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHhcCCch-HHHHHHHHhcCCCHHHHHHh-hhccc
Q 003941 599 LVDRRIVIKLLVTYFQRNHSK-EVLDLMVRMLGFSDEDKQRI-GMAQQ 644 (784)
Q Consensus 599 ~VDRRIVtkLLLTYf~R~~sK-EVL~LMArMLgFSDEEK~ri-GL~~q 644 (784)
-+|.||- -||-+||+.+-+- +|..+|++|+||..++..-. .|+..
T Consensus 52 k~DpRLP-~LLA~~~~~~~t~~~l~~li~s~~g~~p~~~~i~~~l~~~ 98 (130)
T 2jd3_A 52 QLDPRLP-VLLTAILSEEFSADQVVTLLSQTTGWKPSQADIRAVLTEL 98 (130)
T ss_dssp HHCTHHH-HHHHHHCSTTCCHHHHHHHHHHHHCCCCCTHHHHHTC---
T ss_pred hcChhHH-HHHHHHhcCCCCHHHHHHHHHHHcCCCCchhHHHHHHHHh
Confidence 3788887 6888899977777 89999999999995555443 44443
No 136
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=20.30 E-value=4.4e+02 Score=23.16 Aligned_cols=71 Identities=20% Similarity=0.326 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHhhHHHHHHHHHHhhhcCCCccCCCCCCCCcccCCCCccCCCCCchhHHHHHHHHHHHHHH
Q 003941 311 VVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKDLK 390 (784)
Q Consensus 311 ~~~sLk~~~~~L~kEn~tlk~~~~eL~a~L~~~r~t~~~k~~~da~e~~~r~~s~~~~~~sf~~kEeme~sl~~L~~eL~ 390 (784)
+|+.+|.-+..|+-+..+..-.+..+++.+...... .+..+..+..|.+-+.
T Consensus 3 ~MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~----------------------------~~~~E~Ei~sL~kk~~ 54 (101)
T 3u1c_A 3 HMDAIKKKMQMLKLDKENALDRAEQAEADKKAAEER----------------------------SKQLEDDIVQLEKQLR 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHhHHHHHHHHHHHH
Confidence 466777777777777777777777777766655222 3455555666666666
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 003941 391 ETCSERDKALQELTRLKQH 409 (784)
Q Consensus 391 e~~~E~dKa~kEL~RLRqH 409 (784)
-+..+.|++...|...++-
T Consensus 55 ~lE~eld~~ee~L~ea~~k 73 (101)
T 3u1c_A 55 VTEDSRDQVLEELHKSEDS 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666655554444
No 137
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=20.01 E-value=1.1e+02 Score=22.80 Aligned_cols=26 Identities=50% Similarity=0.592 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhhhHHhHhHhhhhHHHH
Q 003941 72 EIERYKAEIKRLQESEAEIKALSVNYAAL 100 (784)
Q Consensus 72 eie~ykaei~~lq~seaeikals~nyaal 100 (784)
||--+|.||--|.. ||-||-|-.|||
T Consensus 3 eiaalkqeiaalkk---eiaalkfeiaal 28 (33)
T 4dzn_A 3 EIAALKQEIAALKK---EIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHH
Done!