BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 003942
(784 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3 OS=Homo sapiens GN=FUBP3
PE=1 SV=2
Length = 572
Score = 98.2 bits (243), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/173 (34%), Positives = 99/173 (57%), Gaps = 15/173 (8%)
Query: 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLS 257
+ ++ + +VP+ VG +IG+ G+ I +Q SG KIQI ++ P RP + GT
Sbjct: 76 TVITEEFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPE---RPCVLTGTPE 132
Query: 258 NIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGET 317
+I++A++L+ ++ G G S + Q EI +P KVGL+IGRGGET
Sbjct: 133 SIEQAKRLLGQIVDRCRNG-------PGFHNDIDSNSTIQ-EILIPASKVGLVIGRGGET 184
Query: 318 IKGLQTRSGARIQLIPQH-LPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 369
IK LQ R+G ++ +I LP G ++ +R+TGD +++ A+EM+ E++ +
Sbjct: 185 IKQLQERTGVKMVMIQDGPLPTG---ADKPLRITGDAFKVQQAREMVLEIIRE 234
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/178 (29%), Positives = 89/178 (50%), Gaps = 12/178 (6%)
Query: 201 SRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNID 260
S ++ VP VG++IG+ G+ I+ +Q ++G +IQ D P R +++G
Sbjct: 255 SIEVSVPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGISPE---RAAQVMGPPDRCQ 311
Query: 261 KAEKLINAVIAEAD--------AGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIG 312
A +I+ +I A A RG + A G +++ VP +K GL+IG
Sbjct: 312 HAAHIISELILTAQERDGFGGLAAARGRGRGRGDWSVGAPGGVQEITYTVPADKCGLVIG 371
Query: 313 RGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 370
+GGE IK + +SGA ++L P D + R + G +QIE+A+++I E + T
Sbjct: 372 KGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFT-IRGVPQQIEVARQLIDEKVGGT 428
>sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1
PE=1 SV=3
Length = 644
Score = 97.1 bits (240), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 100/170 (58%), Gaps = 13/170 (7%)
Query: 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLS 257
S M+ + +VP+ VG +IG+ G+ I +Q SG KIQI D+ P R + GT
Sbjct: 99 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPE---RSCMLTGTPE 155
Query: 258 NIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGET 317
++ A++L++ ++ + G P A G G A Q EI +P K GL+IG+GGET
Sbjct: 156 SVQSAKRLLDQIVEK----GRP---APGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGET 207
Query: 318 IKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVL 367
IK LQ R+G ++ +I Q P+ G+ ++ +R+TGD +++ A+EM+ E++
Sbjct: 208 IKQLQERAGVKMVMI-QDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 255
Score = 83.2 bits (204), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 24/205 (11%)
Query: 171 ESVEPSNVVPQQVVDNSK-------SDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIR 223
ESV+ + + Q+V+ + D P + ++I +P +K G++IGK G+TI+
Sbjct: 155 ESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNA-----VQEIMIPASKAGLVIGKGGETIK 209
Query: 224 YLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVA 283
LQ +G K+ + +D + A +P+ I G + +A++++ +I D GG +
Sbjct: 210 QLQERAGVKMVMIQDGPQN-TGADKPLRITGDPYKVQQAKEMVLELIR--DQGGFREVRN 266
Query: 284 RGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSK 343
G E +++ +P VG++IGR GE IK +Q +G RIQ P DG+
Sbjct: 267 E---YGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD-----DGTT 318
Query: 344 -ERIVRVTGDMRQIEIAQEMIKEVL 367
ERI ++TG + + A E+I ++L
Sbjct: 319 PERIAQITGPPDRCQHAAEIITDLL 343
Score = 73.2 bits (178), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 12/178 (6%)
Query: 204 IEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAE 263
+ +P VG++IG+ G+ I+ +Q ++G +IQ D P R +I G A
Sbjct: 280 VPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPE---RIAQITGPPDRCQHAA 336
Query: 264 KLINAVIAEADAGGSPSLVARGLATAQAS--------GAAEQVEIKVPNEKVGLIIGRGG 315
++I ++ AG G + G ++ VP K GLIIG+GG
Sbjct: 337 EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGG 396
Query: 316 ETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTVRP 373
ETIK + +SGARI+L P D ++ + G +QI+ A+++I+E + V P
Sbjct: 397 ETIKSISQQSGARIELQRNPPPNAD-PNMKLFTIRGTPQQIDYARQLIEEKIGGPVNP 453
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 299 EIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEI 358
E KVP+ VG IIGRGGE I +Q SG +IQ+ P+ G ER +TG ++
Sbjct: 104 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQI----APDSGGLPERSCMLTGTPESVQS 159
Query: 359 AQEMIKEVLSQ 369
A+ ++ +++ +
Sbjct: 160 AKRLLDQIVEK 170
>sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein 1 OS=Mus musculus GN=Fubp1
PE=1 SV=1
Length = 651
Score = 96.3 bits (238), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 100/170 (58%), Gaps = 13/170 (7%)
Query: 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLS 257
S M+ + +VP+ VG +IG+ G+ I +Q SG KIQI D+ P R + GT
Sbjct: 95 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPE---RSCMLTGTPE 151
Query: 258 NIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGET 317
++ A++L++ ++ + G P A G G A Q EI +P K GL+IG+GGET
Sbjct: 152 SVQSAKRLLDQIVEK----GRP---APGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGET 203
Query: 318 IKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVL 367
IK LQ R+G ++ +I Q P+ G+ ++ +R+TGD +++ A+EM+ E++
Sbjct: 204 IKQLQERAGVKMVMI-QDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 251
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 24/205 (11%)
Query: 171 ESVEPSNVVPQQVVDNSK-------SDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIR 223
ESV+ + + Q+V+ + D P + ++I +P +K G++IGK G+TI+
Sbjct: 151 ESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNA-----VQEIMIPASKAGLVIGKGGETIK 205
Query: 224 YLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVA 283
LQ +G K+ + +D + A +P+ I G + +A++++ +I D GG +
Sbjct: 206 QLQERAGVKMVMIQDGPQN-TGADKPLRITGDPYKVQQAKEMVLELIR--DQGGFREVRN 262
Query: 284 RGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSK 343
G E +++ +P VG++IGR GE IK +Q +G RIQ P DG+
Sbjct: 263 E---YGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD-----DGTT 314
Query: 344 -ERIVRVTGDMRQIEIAQEMIKEVL 367
+RI ++TG + + A E+I ++L
Sbjct: 315 PDRIAQITGPPDRCQHAAEIITDLL 339
Score = 71.6 bits (174), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 12/178 (6%)
Query: 204 IEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAE 263
+ +P VG++IG+ G+ I+ +Q ++G +IQ D P R +I G A
Sbjct: 276 VPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPD---RIAQITGPPDRCQHAA 332
Query: 264 KLINAVIAEADAGGSPSLVARGLATAQAS--------GAAEQVEIKVPNEKVGLIIGRGG 315
++I ++ AG G + G ++ VP K GLIIG+GG
Sbjct: 333 EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGG 392
Query: 316 ETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTVRP 373
ETIK + +SGARI+L P D ++ + G +QI+ A+++I+E + V P
Sbjct: 393 ETIKSISQQSGARIELQRSPPPNAD-PNMKLFTIRGTPQQIDYARQLIEEKIGGPVNP 449
Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 299 EIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEI 358
E KVP+ VG IIGRGGE I +Q SG +IQ+ P+ G ER +TG ++
Sbjct: 100 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQI----APDSGGLPERSCMLTGTPESVQS 155
Query: 359 AQEMIKEVLSQ 369
A+ ++ +++ +
Sbjct: 156 AKRLLDQIVEK 166
>sp|Q32PX7|FUBP1_RAT Far upstream element-binding protein 1 OS=Rattus norvegicus
GN=Fubp1 PE=1 SV=1
Length = 639
Score = 95.9 bits (237), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/170 (35%), Positives = 100/170 (58%), Gaps = 13/170 (7%)
Query: 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLS 257
S M+ + +VP+ VG +IG+ G+ I +Q SG KIQI D+ P R + GT
Sbjct: 94 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPE---RSCMLTGTPE 150
Query: 258 NIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGET 317
++ A++L++ ++ + G P A G G A Q EI +P K GL+IG+GGET
Sbjct: 151 SVQSAKRLLDQIVEK----GRP---APGFHHGDGPGNAVQ-EIMIPASKAGLVIGKGGET 202
Query: 318 IKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVL 367
IK LQ R+G ++ +I Q P+ G+ ++ +R+TGD +++ A+EM+ E++
Sbjct: 203 IKQLQERAGVKMVMI-QDGPQNTGA-DKPLRITGDPYKVQQAKEMVLELI 250
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 106/205 (51%), Gaps = 24/205 (11%)
Query: 171 ESVEPSNVVPQQVVDNSK-------SDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIR 223
ESV+ + + Q+V+ + D P + ++I +P +K G++IGK G+TI+
Sbjct: 150 ESVQSAKRLLDQIVEKGRPAPGFHHGDGPGNA-----VQEIMIPASKAGLVIGKGGETIK 204
Query: 224 YLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVA 283
LQ +G K+ + +D + A +P+ I G + +A++++ +I D GG +
Sbjct: 205 QLQERAGVKMVMIQDGPQN-TGADKPLRITGDPYKVQQAKEMVLELIR--DQGGFREVRN 261
Query: 284 RGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSK 343
G E +++ +P VG++IGR GE IK +Q +G RIQ P DG+
Sbjct: 262 E---YGSRIGGNEGIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD-----DGTT 313
Query: 344 -ERIVRVTGDMRQIEIAQEMIKEVL 367
+RI ++TG + + A E+I ++L
Sbjct: 314 PDRIAQITGPPDRCQHAAEIITDLL 338
Score = 71.2 bits (173), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 85/178 (47%), Gaps = 12/178 (6%)
Query: 204 IEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAE 263
+ +P VG++IG+ G+ I+ +Q ++G +IQ D P R +I G A
Sbjct: 275 VPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPD---RIAQITGPPDRCQHAA 331
Query: 264 KLINAVIAEADAGGSPSLVARGLATAQAS--------GAAEQVEIKVPNEKVGLIIGRGG 315
++I ++ AG G + G ++ VP K GLIIG+GG
Sbjct: 332 EIITDLLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGG 391
Query: 316 ETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTVRP 373
ETIK + +SGARI+L P D ++ + G +QI+ A+++I+E + V P
Sbjct: 392 ETIKSISQQSGARIELQRNPPPNAD-PNMKLFTIRGTPQQIDYARQLIEEKIGGPVNP 448
>sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 OS=Rattus norvegicus
GN=Khsrp PE=1 SV=1
Length = 721
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 111/200 (55%), Gaps = 23/200 (11%)
Query: 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLS 257
++M+ + VP+ VG++IG+ G+ I +Q +SG K+QI+ D+ P R V + G
Sbjct: 144 TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE---RSVSLTGAPE 200
Query: 258 NIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGET 317
++ KA+ +++ +++ GG P A +G + EI +P K GL+IG+GGET
Sbjct: 201 SVQKAKMMLDDIVSRG-RGGPPGQFHDN-ANGGQNGTVQ--EIMIPAGKAGLVIGKGGET 256
Query: 318 IKGLQTRSGARIQLIPQHLPEGDGSK----ERIVRVTGDMRQIEIAQEMIKEVLSQTVRP 373
IK LQ R+G ++ LI DGS+ ++ +R+ GD +++ A EM+ ++L + +
Sbjct: 257 IKQLQERAGVKMILIQ------DGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQ- 309
Query: 374 STLSGGF-NQQAYRPRVPTG 392
GGF ++ Y RV G
Sbjct: 310 ----GGFGDRNEYGSRVGGG 325
Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 20/209 (9%)
Query: 171 ESVEPSNVVPQQVVDNSKSDDPSSTDDST------MSRKIEVPNNKVGVLIGKAGDTIRY 224
ESV+ + ++ +V + P D+ ++I +P K G++IGK G+TI+
Sbjct: 200 ESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQ 259
Query: 225 LQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVAR 284
LQ +G K+ + +D + + +P+ IIG + +A +++ ++ E D GG
Sbjct: 260 LQERAGVKMILIQDGSQNTNV-DKPLRIIGDPYKVQQACEMVMDILRERDQGGF------ 312
Query: 285 GLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSK- 343
G S +++ VP VG++IGR GE IK +Q +G RIQ + DG+
Sbjct: 313 GDRNEYGSRVGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQ-----FKQDDGTGP 367
Query: 344 ERIVRVTGDMRQIEIAQEMIKEVLSQTVR 372
E+I + G + E A +I ++L Q++R
Sbjct: 368 EKIAHIMGPPDRCEHAARIINDLL-QSLR 395
Score = 70.5 bits (171), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 89/173 (51%), Gaps = 13/173 (7%)
Query: 204 IEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAE 263
+ VP + VGV+IG++G+ I+ +Q ++G +IQ +D P + I+G + A
Sbjct: 328 VPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPE---KIAHIMGPPDRCEHAA 384
Query: 264 KLINAVIAEADAGGSPSLVARGLATAQASGAAE---------QVEIKVPNEKVGLIIGRG 314
++IN ++ +G A G+ ++ +P K GL+IGRG
Sbjct: 385 RIINDLLQSLRSGPPGPPGAPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRG 444
Query: 315 GETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVL 367
GE +K + ++GA +++ Q P GD + + V + G +QI+ A+++I+E +
Sbjct: 445 GENVKAINQQTGAFVEISRQLPPNGDPNFKLFV-IRGSPQQIDHAKQLIEEKI 496
>sp|Q3U0V1|FUBP2_MOUSE Far upstream element-binding protein 2 OS=Mus musculus GN=Khsrp
PE=1 SV=2
Length = 748
Score = 91.7 bits (226), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/200 (32%), Positives = 111/200 (55%), Gaps = 23/200 (11%)
Query: 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLS 257
++M+ + VP+ VG++IG+ G+ I +Q +SG K+QI+ D+ P R V + G
Sbjct: 144 TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE---RSVSLTGAPE 200
Query: 258 NIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGET 317
++ KA+ +++ +++ GG P A +G + EI +P K GL+IG+GGET
Sbjct: 201 SVQKAKMMLDDIVSRG-RGGPPGQFHDN-ANGGQNGTVQ--EIMIPAGKAGLVIGKGGET 256
Query: 318 IKGLQTRSGARIQLIPQHLPEGDGSK----ERIVRVTGDMRQIEIAQEMIKEVLSQTVRP 373
IK LQ R+G ++ LI DGS+ ++ +R+ GD +++ A EM+ ++L + +
Sbjct: 257 IKQLQERAGVKMILIQ------DGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQ- 309
Query: 374 STLSGGF-NQQAYRPRVPTG 392
GGF ++ Y RV G
Sbjct: 310 ----GGFGDRNEYGSRVGGG 325
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 20/209 (9%)
Query: 171 ESVEPSNVVPQQVVDNSKSDDPSSTDDST------MSRKIEVPNNKVGVLIGKAGDTIRY 224
ESV+ + ++ +V + P D+ ++I +P K G++IGK G+TI+
Sbjct: 200 ESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQ 259
Query: 225 LQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVAR 284
LQ +G K+ + +D + + +P+ IIG + +A +++ ++ E D GG
Sbjct: 260 LQERAGVKMILIQDGSQNTNV-DKPLRIIGDPYKVQQACEMVMDILRERDQGGF------ 312
Query: 285 GLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSK- 343
G S +++ VP VG++IGR GE IK +Q +G RIQ + DG+
Sbjct: 313 GDRNEYGSRVGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQ-----FKQDDGTGP 367
Query: 344 ERIVRVTGDMRQIEIAQEMIKEVLSQTVR 372
E+I + G + E A +I ++L Q++R
Sbjct: 368 EKIAHIMGPPDRCEHAARIINDLL-QSLR 395
Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 89/173 (51%), Gaps = 13/173 (7%)
Query: 204 IEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAE 263
+ VP + VGV+IG++G+ I+ +Q ++G +IQ +D P + I+G + A
Sbjct: 328 VPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPE---KIAHIMGPPDRCEHAA 384
Query: 264 KLINAVIAEADAGGSPSLVARGLATAQASGAAE---------QVEIKVPNEKVGLIIGRG 314
++IN ++ +G A G+ ++ +P K GL+IGRG
Sbjct: 385 RIINDLLQSLRSGPPGPPGAPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRG 444
Query: 315 GETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVL 367
GE +K + ++GA +++ Q P GD + + V + G +QI+ A+++I+E +
Sbjct: 445 GENVKAINQQTGAFVEISRQLPPNGDPNFKLFV-IRGSPQQIDHAKQLIEEKI 496
>sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein 2 OS=Homo sapiens GN=KHSRP
PE=1 SV=4
Length = 711
Score = 90.9 bits (224), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/200 (31%), Positives = 111/200 (55%), Gaps = 23/200 (11%)
Query: 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLS 257
++M+ + VP+ VG++IG+ G+ I +Q +SG K+QI+ D+ P R V + G
Sbjct: 143 TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE---RSVSLTGAPE 199
Query: 258 NIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGET 317
++ KA+ +++ +++ GG P A +G + EI +P K GL+IG+GGET
Sbjct: 200 SVQKAKMMLDDIVSRG-RGGPPGQFHDN-ANGGQNGTVQ--EIMIPAGKAGLVIGKGGET 255
Query: 318 IKGLQTRSGARIQLIPQHLPEGDGSK----ERIVRVTGDMRQIEIAQEMIKEVLSQTVRP 373
IK LQ R+G ++ LI DGS+ ++ +R+ GD +++ A EM+ ++L + +
Sbjct: 256 IKQLQERAGVKMILIQ------DGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQ- 308
Query: 374 STLSGGF-NQQAYRPRVPTG 392
GGF ++ Y R+ G
Sbjct: 309 ----GGFGDRNEYGSRIGGG 324
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 105/209 (50%), Gaps = 20/209 (9%)
Query: 171 ESVEPSNVVPQQVVDNSKSDDPSSTDDST------MSRKIEVPNNKVGVLIGKAGDTIRY 224
ESV+ + ++ +V + P D+ ++I +P K G++IGK G+TI+
Sbjct: 199 ESVQKAKMMLDDIVSRGRGGPPGQFHDNANGGQNGTVQEIMIPAGKAGLVIGKGGETIKQ 258
Query: 225 LQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVAR 284
LQ +G K+ + +D + + +P+ IIG + +A +++ ++ E D GG
Sbjct: 259 LQERAGVKMILIQDGSQNTNV-DKPLRIIGDPYKVQQACEMVMDILRERDQGGF------ 311
Query: 285 GLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSK- 343
G S +++ VP VG++IGR GE IK +Q +G RIQ + DG+
Sbjct: 312 GDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQ-----FKQDDGTGP 366
Query: 344 ERIVRVTGDMRQIEIAQEMIKEVLSQTVR 372
E+I + G + E A +I ++L Q++R
Sbjct: 367 EKIAHIMGPPDRCEHAARIINDLL-QSLR 394
Score = 69.7 bits (169), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 88/173 (50%), Gaps = 13/173 (7%)
Query: 204 IEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAE 263
+ VP + VGV+IG++G+ I+ +Q ++G +IQ +D P + I+G + A
Sbjct: 327 VPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPE---KIAHIMGPPDRCEHAA 383
Query: 264 KLINAVIAEADAGGSPSLVARGLATAQASGAAE---------QVEIKVPNEKVGLIIGRG 314
++IN ++ +G G+ ++ +P K GL+IGRG
Sbjct: 384 RIINDLLQSLRSGPPGPPGGPGMPPGGRGRGRGQGNWGPPGGEMTFSIPTHKCGLVIGRG 443
Query: 315 GETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVL 367
GE +K + ++GA +++ Q P GD + + + + G +QI+ A+++I+E +
Sbjct: 444 GENVKAINQQTGAFVEISRQLPPNGDPNFKLFI-IRGSPQQIDHAKQLIEEKI 495
>sp|Q8UVD9|FUBP2_CHICK Far upstream element-binding protein 2 OS=Gallus gallus GN=KHSRP
PE=1 SV=1
Length = 769
Score = 89.4 bits (220), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/177 (32%), Positives = 101/177 (57%), Gaps = 20/177 (11%)
Query: 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLS 257
+T++ + VP+ VG++IG+ G+ I +Q +SG K+QI+ D+ P R V + G+
Sbjct: 207 TTVTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPE---RSVSLTGSPE 263
Query: 258 NIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQV-EIKVPNEKVGLIIGRGGE 316
+ KA+ +++ +++ GG P G A+G V EI +P K GL+IG+GGE
Sbjct: 264 AVQKAKLMLDDIVSRG-RGGPP-----GQFHDYANGQNGTVQEIMIPAGKAGLVIGKGGE 317
Query: 317 TIKGLQTRSGARIQLIPQHLPEGDGSK----ERIVRVTGDMRQIEIAQEMIKEVLSQ 369
TIK LQ R+G ++ I DGS+ ++ +R+ GD +++ A EM+ ++L +
Sbjct: 318 TIKQLQERAGVKMIFIQ------DGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 368
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 19/208 (9%)
Query: 171 ESVEPSNVVPQQVVDNSKSDDPSSTDD-----STMSRKIEVPNNKVGVLIGKAGDTIRYL 225
E+V+ + ++ +V + P D + ++I +P K G++IGK G+TI+ L
Sbjct: 263 EAVQKAKLMLDDIVSRGRGGPPGQFHDYANGQNGTVQEIMIPAGKAGLVIGKGGETIKQL 322
Query: 226 QYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARG 285
Q +G K+ +D + + +P+ IIG + +A +++ ++ E D GG G
Sbjct: 323 QERAGVKMIFIQDGSQNTNV-DKPLRIIGDPYKVQQACEMVMDILRERDQGGF------G 375
Query: 286 LATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSK-E 344
S +++ VP VG++IGR GE IK +Q +G RIQ + DG+ E
Sbjct: 376 DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQ-----FKQDDGTGPE 430
Query: 345 RIVRVTGDMRQIEIAQEMIKEVLSQTVR 372
+I + G + E A +I ++L Q++R
Sbjct: 431 KIAHIMGPPERCEHAARIINDLL-QSLR 457
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 86/172 (50%), Gaps = 12/172 (6%)
Query: 204 IEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAE 263
+ VP + VGV+IG++G+ I+ +Q ++G +IQ +D P + I+G + A
Sbjct: 390 VPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPE---KIAHIMGPPERCEHAA 446
Query: 264 KLINAVIAEADAGGSPSLVARGLATAQASGAAEQV--------EIKVPNEKVGLIIGRGG 315
++IN ++ +G + G + + +P K GL+IGRGG
Sbjct: 447 RIINDLLQSLRSGPPGPPGHGMPPGGRGRGRGQGIWGPPGGEMTFSIPTHKCGLVIGRGG 506
Query: 316 ETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVL 367
E +K + + GA +++ Q P GD + + + + G +QIE A++ I+E +
Sbjct: 507 ENVKAINQQRGAFVEISRQLPPNGDPNFKLFI-IRGSPQQIEHAKQPIEEKI 557
>sp|Q80WA4|NOVA1_RAT RNA-binding protein Nova-1 (Fragment) OS=Rattus norvegicus GN=Nova1
PE=2 SV=1
Length = 474
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
Query: 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGT 255
+D K+ +P+ G +IGK G TI LQ +GA I++++ D P R I GT
Sbjct: 45 EDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT 104
Query: 256 LSNIDKAEKLINAVIAEADAGGSPSLVARG--LATAQASGAA-----EQVEIKVPNEKVG 308
+ ++ I I E P VA+ ++ Q +QV+I VPN G
Sbjct: 105 IEALNAVHGFIAEKIREM-----PQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAG 159
Query: 309 LIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMI 363
LIIG+GG T+K + +SGA +QL P+G +ER+V V+G+ Q A E+I
Sbjct: 160 LIIGKGGATVKAIMEQSGAWVQL--SQKPDGINLQERVVTVSGEPEQNRKAVELI 212
Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 194 STDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEII 253
STD S +I VP N VG ++GK G T+ Q +GA+IQI++ + P R V I
Sbjct: 391 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 450
Query: 254 GTLSNIDKAEKLI 266
GT + A+ LI
Sbjct: 451 GTPAATQAAQYLI 463
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIP--QHLPEGDGSKERIVRVT 350
G+ + VEI VP VG I+G+GG+T+ Q +GARIQ+ + +P G++ R V +T
Sbjct: 394 GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP---GTRNRKVTIT 450
Query: 351 GDMRQIEIAQEMIKEVLS--QTVR 372
G + AQ +I + ++ Q VR
Sbjct: 451 GTPAATQAAQYLITQRITYEQGVR 474
>sp|Q2PFW9|NOVA1_MACFA RNA-binding protein Nova-1 OS=Macaca fascicularis GN=NOVA1 PE=2
SV=1
Length = 483
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 59/175 (33%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
Query: 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGT 255
+D K+ +P+ G +IGK G TI LQ +GA I++++ D P R I GT
Sbjct: 46 EDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT 105
Query: 256 LSNIDKAEKLINAVIAEADAGGSPSLVARG--LATAQASGAA-----EQVEIKVPNEKVG 308
+ ++ I I E P VA+ ++ Q +QV+I VPN G
Sbjct: 106 VEALNAVHGFIAEKIREM-----PQNVAKTEPVSILQPQTTVNPDRIKQVKIIVPNSTAG 160
Query: 309 LIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMI 363
LIIG+GG T+K + +SGA +QL P+G +ER+V V+G+ Q A E+I
Sbjct: 161 LIIGKGGATVKAIMEQSGAWVQL--SQKPDGINLQERVVTVSGEPEQNRKAVELI 213
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 194 STDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEII 253
STD S +I VP N VG ++GK G T+ Q +GA+IQI++ + P R V I
Sbjct: 392 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 451
Query: 254 GTLSNIDKAEKLI 266
GT + A+ LI
Sbjct: 452 GTPAATQAAQYLI 464
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIP--QHLPEGDGSKERIVRVT 350
G+ + VEI VP VG I+G+GG+T+ Q +GARIQ+ + +P G++ R V +T
Sbjct: 395 GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP---GTRNRKVTIT 451
Query: 351 GDMRQIEIAQEMIKEVLS--QTVR 372
G + AQ +I + ++ Q VR
Sbjct: 452 GTPAATQAAQYLITQRITYEQGVR 475
>sp|Q9UNW9|NOVA2_HUMAN RNA-binding protein Nova-2 OS=Homo sapiens GN=NOVA2 PE=1 SV=1
Length = 492
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/186 (31%), Positives = 91/186 (48%), Gaps = 7/186 (3%)
Query: 180 PQQVVDNSKSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDA 239
P +VV +S+ + ++ K+ +P+ G +IGK G TI LQ +GA I++++
Sbjct: 16 PPEVVCTKRSN---TGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSK 72
Query: 240 DADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLA--TAQASGAAEQ 297
D P R + GT ++ I + E + V L T A+Q
Sbjct: 73 DFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQ 132
Query: 298 VEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIE 357
++ VPN GLIIG+GG T+K + +SGA +QL PEG +ER+V V+G+ Q+
Sbjct: 133 AKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL--SQKPEGINLQERVVTVSGEPEQVH 190
Query: 358 IAQEMI 363
A I
Sbjct: 191 KAVSAI 196
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 10/98 (10%)
Query: 281 LVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIP--QHLPE 338
L A LA A A E VEI VP VG I+G+GG+T+ Q +GARIQ+ + LP
Sbjct: 395 LTAEKLA---AESAKELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP- 450
Query: 339 GDGSKERIVRVTGDMRQIEIAQEMIKEVLS--QTVRPS 374
G++ R V +TG + AQ +I + ++ Q VR S
Sbjct: 451 --GTRNRRVTITGSPAATQAAQYLISQRVTYEQGVRAS 486
Score = 43.5 bits (101), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 37/65 (56%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
+I VP N VG ++GK G T+ Q +GA+IQI++ + P R V I G+ + A
Sbjct: 410 EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAA 469
Query: 263 EKLIN 267
+ LI+
Sbjct: 470 QYLIS 474
>sp|Q9JKN6|NOVA1_MOUSE RNA-binding protein Nova-1 OS=Mus musculus GN=Nova1 PE=1 SV=2
Length = 507
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/187 (30%), Positives = 87/187 (46%), Gaps = 28/187 (14%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
K+ +P+ G +IGK G TI LQ +GA I++++ D P R I GT+ ++
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAV 112
Query: 263 EKLINAVIAEA---------------DAGGSPSLVARGLATA-----------QASGAAE 296
I I E +P + + L ++ + A
Sbjct: 113 HGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRAN 172
Query: 297 QVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQI 356
QV+I VPN GLIIG+GG T+K + +SGA +QL P+G +ER+V V+G+ Q
Sbjct: 173 QVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQL--SQKPDGINLQERVVTVSGEPEQN 230
Query: 357 EIAQEMI 363
A E+I
Sbjct: 231 RKAVELI 237
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 194 STDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEII 253
STD S +I VP N VG ++GK G T+ Q +GA+IQI++ + P R V I
Sbjct: 416 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 475
Query: 254 GTLSNIDKAEKLI 266
GT + A+ LI
Sbjct: 476 GTPAATQAAQYLI 488
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIP--QHLPEGDGSKERIVRVT 350
G+ + VEI VP VG I+G+GG+T+ Q +GARIQ+ + +P G++ R V +T
Sbjct: 419 GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP---GTRNRKVTIT 475
Query: 351 GDMRQIEIAQEMIKEVLS--QTVR 372
G + AQ +I + ++ Q VR
Sbjct: 476 GTPAATQAAQYLITQRITYEQGVR 499
Score = 40.4 bits (93), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 15/82 (18%)
Query: 174 EPSNVV-PQQVV--DNSKSDDPSS--------TDDSTMSR----KIEVPNNKVGVLIGKA 218
EP +++ PQ V D K PSS +D T SR KI VPN+ G++IGK
Sbjct: 131 EPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKG 190
Query: 219 GDTIRYLQYNSGAKIQITRDAD 240
G T++ + SGA +Q+++ D
Sbjct: 191 GATVKAIMEQSGAWVQLSQKPD 212
>sp|P51513|NOVA1_HUMAN RNA-binding protein Nova-1 OS=Homo sapiens GN=NOVA1 PE=1 SV=1
Length = 510
Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 31/190 (16%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITR---DADADPHAATRPVEIIGTLSNI 259
K+ +P+ G +IGK G TI LQ +GA I++++ D P R I GT+ +
Sbjct: 53 KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVEAL 112
Query: 260 DKAEKLINAVIAEA---------------DAGGSPSLVARGLATA-----------QASG 293
+ I I E +P + + L ++ +
Sbjct: 113 NAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTS 172
Query: 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDM 353
A QV+I VPN GLIIG+GG T+K + +SGA +QL P+G +ER+V V+G+
Sbjct: 173 RANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL--SQKPDGINLQERVVTVSGEP 230
Query: 354 RQIEIAQEMI 363
Q A E+I
Sbjct: 231 EQNRKAVELI 240
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 194 STDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEII 253
STD S +I VP N VG ++GK G T+ Q +GA+IQI++ + P R V I
Sbjct: 419 STDGSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVPGTRNRKVTIT 478
Query: 254 GTLSNIDKAEKLI 266
GT + A+ LI
Sbjct: 479 GTPAATQAAQYLI 491
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIP--QHLPEGDGSKERIVRVT 350
G+ + VEI VP VG I+G+GG+T+ Q +GARIQ+ + +P G++ R V +T
Sbjct: 422 GSKDVVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFVP---GTRNRKVTIT 478
Query: 351 GDMRQIEIAQEMIKEVLS--QTVR 372
G + AQ +I + ++ Q VR
Sbjct: 479 GTPAATQAAQYLITQRITYEQGVR 502
Score = 40.0 bits (92), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 44/82 (53%), Gaps = 15/82 (18%)
Query: 174 EPSNVV-PQQVV--DNSKSDDPSS--------TDDSTMSR----KIEVPNNKVGVLIGKA 218
EP +++ PQ V D K PSS +D T SR KI VPN+ G++IGK
Sbjct: 134 EPVSILQPQTTVNPDRIKQTLPSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKG 193
Query: 219 GDTIRYLQYNSGAKIQITRDAD 240
G T++ + SGA +Q+++ D
Sbjct: 194 GATVKAVMEQSGAWVQLSQKPD 215
>sp|Q9Y2W6|TDRKH_HUMAN Tudor and KH domain-containing protein OS=Homo sapiens GN=TDRKH
PE=1 SV=2
Length = 561
Score = 63.2 bits (152), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 26/167 (15%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
++ VP V ++IG+ G I+ L+ +GA+I D D + R + I G + KA
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARI----DVDTEDVGDERVLLISGFPVQVCKA 111
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQ 322
+ I+ ++ E +P +EQ + VP VG IIGRGGETI+ +
Sbjct: 112 KAAIHQILTE----NTP--------------VSEQ--LSVPQRSVGRIIGRGGETIRSIC 151
Query: 323 TRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 369
SGA+I + EG R+++++G +++ A+ +I E +S+
Sbjct: 152 KASGAKITCDKE--SEGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 196
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 297 QVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQI 356
++E++VP E V LIIGR G IK L+ ++GARI + + D ER++ ++G Q+
Sbjct: 54 EIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTE-----DVGDERVLLISGFPVQV 108
Query: 357 EIAQEMIKEVLSQ 369
A+ I ++L++
Sbjct: 109 CKAKAAIHQILTE 121
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 180 PQQVVDNSKSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDA 239
P QV + T+++ +S ++ VP VG +IG+ G+TIR + SGAKI +++
Sbjct: 105 PVQVCKAKAAIHQILTENTPVSEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKES 164
Query: 240 DADPHAATRPVEIIGTLSNIDKAEKLINAVIAE 272
+ +R ++I GT + A+ LI ++E
Sbjct: 165 EG-TLLLSRLIKISGTQKEVAAAKHLILEKVSE 196
>sp|Q80VL1|TDRKH_MOUSE Tudor and KH domain-containing protein OS=Mus musculus GN=Tdrkh
PE=1 SV=1
Length = 560
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 26/167 (15%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
++ VP V ++IG+ G I+ L+ +GA+I D D + R + I G + KA
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARI----DVDTEDVGDERVLLISGFPVQVCKA 111
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQ 322
+ I+ ++ E +P EQ + VP VG IIGRGGETI+ +
Sbjct: 112 KAAIHQILTE----NTPVF--------------EQ--LSVPQRSVGRIIGRGGETIRSIC 151
Query: 323 TRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 369
SGA+I + EG R+++++G +++ A+ +I E +S+
Sbjct: 152 KASGAKITCDKE--SEGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 196
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 297 QVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQI 356
++E++VP E V LIIGR G IK L+ ++GARI + + D ER++ ++G Q+
Sbjct: 54 EIEMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTE-----DVGDERVLLISGFPVQV 108
Query: 357 EIAQEMIKEVLSQ 369
A+ I ++L++
Sbjct: 109 CKAKAAIHQILTE 121
Score = 41.2 bits (95), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 1/93 (1%)
Query: 180 PQQVVDNSKSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDA 239
P QV + T+++ + ++ VP VG +IG+ G+TIR + SGAKI +++
Sbjct: 105 PVQVCKAKAAIHQILTENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKES 164
Query: 240 DADPHAATRPVEIIGTLSNIDKAEKLINAVIAE 272
+ +R ++I GT + A+ LI ++E
Sbjct: 165 EG-TLLLSRLIKISGTQKEVAAAKHLILEKVSE 196
>sp|Q9PW80|IF2B3_DANRE Insulin-like growth factor 2 mRNA-binding protein 3 OS=Danio rerio
GN=igf2bp3 PE=1 SV=1
Length = 582
Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 82/186 (44%), Gaps = 40/186 (21%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
KI NN VG LIGK G ++ ++ ++ KI I+ D + R + + GTL KA
Sbjct: 279 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGTLDACAKA 338
Query: 263 EKLINAVIAE------------------------------ADAGGSPSLVA-------RG 285
E+ I + E A G SPS+V+ G
Sbjct: 339 EEEIMKKVRESYENDVAAMHLQSNLIPGLNLNALGLFPGAASGGISPSVVSGPPPGAQAG 398
Query: 286 LATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKER 345
+ A +E V + +P VG IIG+ G+ IK L +GA I++ P +G +K+R
Sbjct: 399 YQSFGAQMESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAP---ADGIDAKQR 455
Query: 346 IVRVTG 351
+V ++G
Sbjct: 456 MVIISG 461
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 80/170 (47%), Gaps = 18/170 (10%)
Query: 204 IEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADAD-PHAATRPVEIIGTLSNIDKA 262
+ +P VG +IGK G I+ L +GA I+I A AD A R V I G KA
Sbjct: 413 LFIPALAVGAIIGKQGQHIKQLSRFAGASIKI---APADGIDAKQRMVIISGPPEAQFKA 469
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQ 322
+ I + E + G V + IKVP+ G +IG+GG+T+ LQ
Sbjct: 470 QGRIFGKLKEENFFGPKEEVKL------------EAHIKVPSFAAGRVIGKGGKTVNELQ 517
Query: 323 TRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTVR 372
+ A + + P D + + +V++TG ++AQ I+E++SQ R
Sbjct: 518 NLTSAEVVVPRDQTP--DENDQVVVKITGHFYASQLAQRKIQEIISQVRR 565
Score = 40.4 bits (93), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 22/164 (13%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
++ VP VG +IGK G TIR + + +KI I R +A AA +P+ + T A
Sbjct: 198 RLLVPTQFVGAIIGKEGATIRNITKQTHSKIDIHRKENAG--AAEKPITVHSTPEGCSSA 255
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEKVGLIIGRGGETIKG 320
+ I ++ + A + E++ +K+ N VG +IG+ G +K
Sbjct: 256 CRNIMEIMQK---------------EAIDTKITEEIPLKILAHNNFVGRLIGKEGRNLKK 300
Query: 321 LQTRSGARIQLIP-QHLPEGDGSKERIVRVTGDMRQIEIAQEMI 363
++ + +I + P Q L + ER + V G + A+E I
Sbjct: 301 IEQDTDTKITISPLQDLTLYN--PERTITVKGTLDACAKAEEEI 342
>sp|Q08CK7|IF2B1_DANRE Insulin-like growth factor 2 mRNA-binding protein 1 OS=Danio rerio
GN=igf2bp1 PE=1 SV=1
Length = 598
Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 37/200 (18%)
Query: 184 VDNSKSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADP 243
+ N ++ D + D+ + K+ NN VG LIGK G ++ ++ ++ KI I+ D
Sbjct: 266 IMNQEAKDTKTADEVPL--KVLAHNNFVGRLIGKEGRNLKKVEQDTDTKITISPLQDLTL 323
Query: 244 HAATRPVEIIGTLSNIDKAEKLINAVIAEA---DAGGS---------PSLVARGLATAQA 291
+ R + + G++ AE+ I + EA D +L A GL +
Sbjct: 324 YNPERTITVKGSIEACCLAEQEIMKKVREAYDNDIAAMNQQTHLIPGLNLGAIGLFPPSS 383
Query: 292 S------------------GAAEQ--VEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQL 331
+ GA+EQ V + +P + VG +IG+ G+ IK L +GA I++
Sbjct: 384 AMPPPALGNSVPGPPYGPMGASEQETVHVYIPAQAVGALIGKKGQHIKQLSRFAGASIKI 443
Query: 332 IPQHLPEGDGSKERIVRVTG 351
P P+ SK R+V VTG
Sbjct: 444 APAEAPD---SKMRMVIVTG 460
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 76/165 (46%), Gaps = 16/165 (9%)
Query: 206 VPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKL 265
+P VG LIGK G I+ L +GA I+I A+A P + R V + G KA+
Sbjct: 414 IPAQAVGALIGKKGQHIKQLSRFAGASIKIA-PAEA-PDSKMRMVIVTGPPEAQFKAQGR 471
Query: 266 INAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRS 325
I + E + G V + IKV G +IG+GG+T+ LQ +
Sbjct: 472 IYGKLKEENFFGPKEEVKL------------ETHIKVAAAAAGRVIGKGGKTVNELQNLT 519
Query: 326 GARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 370
A + + + P D + IV++ G ++AQ I+++L+Q
Sbjct: 520 AAEVVVPREQTP--DEHDQVIVKIIGHFYASQLAQRKIRDILTQV 562
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 87/182 (47%), Gaps = 23/182 (12%)
Query: 189 SDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATR 248
S PS + + ++ VP VG +IGK G TIR + + +KI + R +A AA +
Sbjct: 188 SGIPSKHQHADIPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKENAG--AAEK 245
Query: 249 PVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEK 306
P+ I T A ++I ++ + A+ + A++V +KV N
Sbjct: 246 PISIHSTPEGCSAACRMILEIMNQE---------------AKDTKTADEVPLKVLAHNNF 290
Query: 307 VGLIIGRGGETIKGLQTRSGARIQLIP-QHLPEGDGSKERIVRVTGDMRQIEIA-QEMIK 364
VG +IG+ G +K ++ + +I + P Q L + ER + V G + +A QE++K
Sbjct: 291 VGRLIGKEGRNLKKVEQDTDTKITISPLQDLTLYN--PERTITVKGSIEACCLAEQEIMK 348
Query: 365 EV 366
+V
Sbjct: 349 KV 350
>sp|O00425|IF2B3_HUMAN Insulin-like growth factor 2 mRNA-binding protein 3 OS=Homo sapiens
GN=IGF2BP3 PE=1 SV=2
Length = 579
Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 79/165 (47%), Gaps = 16/165 (9%)
Query: 206 VPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKL 265
+P VG +IGK G I+ L +GA I+I A+A P A R V I G KA+
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKIA-PAEA-PDAKVRMVIITGPPEAQFKAQGR 469
Query: 266 INAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRS 325
I I E + SP + I+VP+ G +IG+GG+T+ LQ S
Sbjct: 470 IYGKIKEENFV-SPK-----------EEVKLEAHIRVPSFAAGRVIGKGGKTVNELQNLS 517
Query: 326 GARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 370
A + + P D + + +V++TG ++AQ I+E+L+Q
Sbjct: 518 SAEVVVPRDQTP--DENDQVVVKITGHFYACQVAQRKIQEILTQV 560
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 77/182 (42%), Gaps = 36/182 (19%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
KI NN VG LIGK G ++ ++ ++ KI I+ + + R + + G + KA
Sbjct: 280 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGNVETCAKA 339
Query: 263 EKLINAVIAEA--DAGGSPSLVARGL--ATAQASGA------------------------ 294
E+ I I E+ + S +L A + A G
Sbjct: 340 EEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTPPYPQ 399
Query: 295 -----AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRV 349
E V + +P VG IIG+ G+ IK L +GA I++ P P+ +K R+V +
Sbjct: 400 FEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPD---AKVRMVII 456
Query: 350 TG 351
TG
Sbjct: 457 TG 458
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 22/171 (12%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
++ VP VG +IGK G TIR + + +KI + R +A AA + + I+ T
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENAG--AAEKSITILST------- 249
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEKVGLIIGRGGETIKG 320
E + S++ AQ E++ +K+ N VG +IG+ G +K
Sbjct: 250 --------PEGTSAACKSILEIMHKEAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKK 301
Query: 321 LQTRSGARIQLIP-QHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 370
++ + +I + P Q L + ER + V G++ A+E I + + ++
Sbjct: 302 IEQDTDTKITISPLQELTLYN--PERTITVKGNVETCAKAEEEIMKKIRES 350
>sp|Q9CPN8|IF2B3_MOUSE Insulin-like growth factor 2 mRNA-binding protein 3 OS=Mus musculus
GN=Igf2bp3 PE=1 SV=1
Length = 579
Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 80/165 (48%), Gaps = 16/165 (9%)
Query: 206 VPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKL 265
+P VG +IGK G I+ L +GA I+I A+A P A R V I G KA+
Sbjct: 412 IPALSVGAIIGKQGQHIKQLSRFAGASIKIA-PAEA-PDAKVRMVIITGPPEAQFKAQGR 469
Query: 266 INAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRS 325
I I E + SP + I+VP+ G +IG+GG+T+ LQ+ S
Sbjct: 470 IYGKIKEENFV-SPK-----------EEVKLEAHIRVPSFAAGRVIGKGGKTVNELQSLS 517
Query: 326 GARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 370
A + + P D + + +V++TG ++AQ I+E+L+Q
Sbjct: 518 SAEVVVPRDQTP--DENDQVVVKITGHFYACQVAQRKIQEILTQV 560
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 78/182 (42%), Gaps = 36/182 (19%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
KI NN VG LIGK G ++ ++ ++ KI I+ + + R + + G++ KA
Sbjct: 280 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTLYNPERTITVKGSVETCAKA 339
Query: 263 EKLINAVIAEA--DAGGSPSLVARGL--ATAQASGA------------------------ 294
E+ I I E+ + S +L A + A G
Sbjct: 340 EEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSTLTPPYPQ 399
Query: 295 -----AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRV 349
E V + +P VG IIG+ G+ IK L +GA I++ P P+ +K R+V +
Sbjct: 400 FEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKIAPAEAPD---AKVRMVII 456
Query: 350 TG 351
TG
Sbjct: 457 TG 458
Score = 42.0 bits (97), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 22/171 (12%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
++ VP VG +IGK G TIR + + +KI + R + AA + + I+ T
Sbjct: 199 RLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRKENTG--AAEKSITILST------- 249
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEKVGLIIGRGGETIKG 320
E + S++ AQ E++ +K+ N VG +IG+ G +K
Sbjct: 250 --------PEGTSAACKSILEIMHKEAQDIKFTEEIPLKILAHNNFVGRLIGKEGRNLKK 301
Query: 321 LQTRSGARIQLIP-QHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 370
++ + +I + P Q L + ER + V G + A+E I + + ++
Sbjct: 302 IEQDTDTKITISPLQELTLYN--PERTITVKGSVETCAKAEEEIMKKIRES 350
>sp|Q15366|PCBP2_HUMAN Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=1 SV=1
Length = 365
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 197 DSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRD-------ADADP-HAATR 248
+ T++ ++ + +VG +IGK G++++ ++ SGA+I I+ A P +A +
Sbjct: 11 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFK 70
Query: 249 PVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVG 308
+I IDK E+ I++ + + A P + R + VP + G
Sbjct: 71 AFAMI-----IDKLEEDISSSMTNSTAASRPPVTLR---------------LVVPASQCG 110
Query: 309 LIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLS 368
+IG+GG IK ++ +GA++Q+ LP S ER + + G + I + I V+
Sbjct: 111 SLIGKGGCKIKEIRESTGAQVQVAGDMLPN---STERAITIAGIPQSIIECVKQICVVML 167
Query: 369 QTVRPS 374
+T+ S
Sbjct: 168 ETLSQS 173
Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 57/107 (53%), Gaps = 11/107 (10%)
Query: 175 PSNVVPQ---QVVDNSKSDDPSSTDDST------MSRKIEVPNNKVGVLIGKAGDTIRYL 225
P+N + + ++D + D SS +ST ++ ++ VP ++ G LIGK G I+ +
Sbjct: 64 PTNAIFKAFAMIIDKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEI 123
Query: 226 QYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAE 272
+ ++GA++Q+ D P++ R + I G +I + K I V+ E
Sbjct: 124 RESTGAQVQVA--GDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 168
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 10/82 (12%)
Query: 299 EIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEI 358
E+ +PN+ +G IIGR G I ++ SGA+I++ +GS +R V +TG I +
Sbjct: 291 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPV----EGSTDRQVTITGSAASISL 346
Query: 359 AQEMIKEVLSQTVRPSTLSGGF 380
AQ +I VR S+ +GG
Sbjct: 347 AQYLIN------VRLSSETGGM 362
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 199 TMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSN 258
T S ++ +PN+ +G +IG+ G I ++ SGA+I+I + + R V I G+ ++
Sbjct: 287 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG---STDRQVTITGSAAS 343
Query: 259 IDKAEKLINAVIAEADAG 276
I A+ LIN ++ G
Sbjct: 344 ISLAQYLINVRLSSETGG 361
>sp|O73932|IF23A_XENLA Insulin-like growth factor 2 mRNA-binding protein 3-A OS=Xenopus
laevis GN=igf2bp3-a PE=1 SV=1
Length = 594
Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 206 VPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADAD-PHAATRPVEIIGTLSNIDKAEK 264
+P VG +IGK G I+ L +GA I+I A A+ P A R V I G KA+
Sbjct: 425 IPALAVGAIIGKQGQHIKQLSRFAGASIKI---APAEGPDAKLRMVIITGPPEAQFKAQG 481
Query: 265 LINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324
I + E + G V + IKVP+ G +IG+GG+T+ LQ
Sbjct: 482 RIYGKLKEENFFGPKEEVKL------------ETHIKVPSYAAGRVIGKGGKTVNELQNL 529
Query: 325 SGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLS 368
+ A + + P D + E +V++TG ++AQ I+E+L+
Sbjct: 530 TSAEVVVPRDQTP--DENDEVVVKITGHFYASQLAQRKIQEILA 571
Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 81/185 (43%), Gaps = 39/185 (21%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
KI NN VG LIGK G ++ ++ ++ KI I+ D + R + + G++ KA
Sbjct: 290 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIEPCAKA 349
Query: 263 EKLINAVIAEA---DAGGS---------PSLVARGLATAQASGA---------------- 294
E+ I I E+ D +L A GL + +SG
Sbjct: 350 EEEIMKKIRESYENDIAAMNLQAHLIPGLNLNALGLFPSSSSGMPPPSVGVPSPTSSTSY 409
Query: 295 --------AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERI 346
+E V + +P VG IIG+ G+ IK L +GA I++ P EG +K R+
Sbjct: 410 PPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAP---AEGPDAKLRM 466
Query: 347 VRVTG 351
V +TG
Sbjct: 467 VIITG 471
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 19/133 (14%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
++ VP VG +IGK G TIR + + +KI I R +A AA +P+ I T A
Sbjct: 209 RMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAG--AAEKPITIHSTPEGCSAA 266
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEKVGLIIGRGGETIKG 320
K+I ++ + AQ + E++ +K+ N VG +IG+ G +K
Sbjct: 267 CKIIMEIMQKE---------------AQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKK 311
Query: 321 LQTRSGARIQLIP 333
++ + +I + P
Sbjct: 312 IEQDTDTKITISP 324
>sp|O57526|IF23B_XENLA Insulin-like growth factor 2 mRNA-binding protein 3-B OS=Xenopus
laevis GN=igf2bp3-b PE=1 SV=1
Length = 593
Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 206 VPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADAD-PHAATRPVEIIGTLSNIDKAEK 264
+P VG +IGK G I+ L +GA I+I A A+ P A R V I G KA+
Sbjct: 424 IPALAVGAIIGKQGQHIKQLSRFAGASIKI---APAEGPDAKLRMVIITGPPEAQFKAQG 480
Query: 265 LINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324
I + E + G V + IKVP+ G +IG+GG+T+ LQ
Sbjct: 481 RIYGKLKEENFFGPKEEVKL------------EAHIKVPSYAAGRVIGKGGKTVNELQNL 528
Query: 325 SGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLS 368
+ A + + P D + + +V++TG ++AQ I+E+L+
Sbjct: 529 TSAEVVVPRDQTP--DENDQVVVKITGHFYASQLAQRKIQEILA 570
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 39/185 (21%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
KI NN VG LIGK G ++ ++ ++ KI I+ D + R + + G++ KA
Sbjct: 289 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIETCAKA 348
Query: 263 EKLINAVIAEA---DAGGS---------PSLVARGLA-----------------TAQASG 293
E+ + I E+ D +L A GL T AS
Sbjct: 349 EEEVMKKIRESYENDIAAMNLQAHLIPGLNLNALGLFPPSSSGMPPPSAGVSSPTTSASY 408
Query: 294 -------AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERI 346
+E V + +P VG IIG+ G+ IK L +GA I++ P EG +K R+
Sbjct: 409 PPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAP---AEGPDAKLRM 465
Query: 347 VRVTG 351
V +TG
Sbjct: 466 VIITG 470
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 80/171 (46%), Gaps = 22/171 (12%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
++ VP VG +IGK G TIR + + +KI I R +A AA +P+ I T A
Sbjct: 208 RMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAG--AAEKPITIHSTPEGCSAA 265
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEKVGLIIGRGGETIKG 320
K+I ++ + AQ + E++ +K+ N VG +IG+ G +K
Sbjct: 266 CKIIMEIMQKE---------------AQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKK 310
Query: 321 LQTRSGARIQLIP-QHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 370
++ + +I + P Q L + ER + V G + A+E + + + ++
Sbjct: 311 IEQDTDTKITISPLQDLTLYN--PERTITVKGSIETCAKAEEEVMKKIRES 359
>sp|Q5ZLP8|IF2B3_CHICK Insulin-like growth factor 2 mRNA-binding protein 3 OS=Gallus
gallus GN=IGF2BP3 PE=2 SV=1
Length = 584
Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 206 VPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADAD-PHAATRPVEIIGTLSNIDKAEK 264
+P VG +IGK G I+ L +GA I+I A A+ P A R V I G KA+
Sbjct: 416 IPALAVGAIIGKQGQHIKQLSRFAGASIKI---APAEGPDAKLRMVIITGPPEAQFKAQG 472
Query: 265 LINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324
I + E + G V + IKVP+ G +IG+GG+T+ LQ
Sbjct: 473 RIYGKLKEENFFGPKEEVKL------------EAHIKVPSYAAGRVIGKGGKTVNELQNL 520
Query: 325 SGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLS 368
+ A + + P D + + +V++TG ++AQ I+E+L+
Sbjct: 521 TSAEVVVPRDQTP--DENDQVVVKITGHFYACQLAQRKIQEILA 562
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 80/185 (43%), Gaps = 39/185 (21%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
KI NN VG LIGK G ++ ++ ++ KI I+ D + R + + G++ KA
Sbjct: 281 KILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPERTITVKGSIETCAKA 340
Query: 263 EKLINAVIAEA---DAGGS---------PSLVARGLATAQASGA---------------- 294
E+ I I E+ D +L A GL +SG
Sbjct: 341 EEEIMKKIRESYENDIAAMNLQAHLIPGLNLNALGLFPPSSSGIPPPAVSVASAAAAASY 400
Query: 295 --------AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERI 346
+E V + +P VG IIG+ G+ IK L +GA I++ P EG +K R+
Sbjct: 401 PPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKIAP---AEGPDAKLRM 457
Query: 347 VRVTG 351
V +TG
Sbjct: 458 VIITG 462
Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 80/171 (46%), Gaps = 22/171 (12%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
++ VP VG +IGK G TIR + + +KI I R +A AA +P+ I T A
Sbjct: 200 RMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRKENAG--AAEKPITIHSTPEGCSTA 257
Query: 263 EKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEKVGLIIGRGGETIKG 320
K+I ++ + AQ + E++ +K+ N VG +IG+ G +K
Sbjct: 258 CKIIMEIMQKE---------------AQDTKFTEEIPLKILAHNNFVGRLIGKEGRNLKK 302
Query: 321 LQTRSGARIQLIP-QHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 370
++ + +I + P Q L + ER + V G + A+E I + + ++
Sbjct: 303 IEQDTDTKITISPLQDLTLYN--PERTITVKGSIETCAKAEEEIMKKIRES 351
>sp|Q5SF07|IF2B2_MOUSE Insulin-like growth factor 2 mRNA-binding protein 2 OS=Mus musculus
GN=Igf2bp2 PE=1 SV=1
Length = 592
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 18/166 (10%)
Query: 206 VPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADAD-PHAATRPVEIIGTLSNIDKAEK 264
+P VG +IGK G I+ L +GA I+I A A+ P + R V I G KA+
Sbjct: 427 IPTQAVGAIIGKKGAHIKQLARFAGASIKI---APAEGPDVSERMVIITGPPEAQFKAQG 483
Query: 265 LINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324
I + E + V + I+VP+ G +IG+GG+T+ LQ
Sbjct: 484 RIFGKLKEENFFNPKEEVKL------------EAHIRVPSSTAGRVIGKGGKTVNELQNL 531
Query: 325 SGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 370
+ A + + P D ++E IVR+ G + AQ I+E++ Q
Sbjct: 532 TSAEVIVPRDQTP--DENEEVIVRIIGHFFASQTAQRKIREIVQQV 575
Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/223 (26%), Positives = 96/223 (43%), Gaps = 43/223 (19%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
+I VP VG +IGK G TI+ + + +++ I R ++ AA +PV I T +A
Sbjct: 190 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSG--AAEKPVTIHATPEGTSEA 247
Query: 263 EKLINAVI-AEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEKVGLIIGRGGETIK 319
++I ++ EAD + AE+V +K+ N VG +IG+ G +K
Sbjct: 248 CRMILEIMQKEADE----------------TKLAEEVPLKILAHNGFVGRLIGKEGRNLK 291
Query: 320 GLQTRSGARIQLIPQHLPEGDGSK---ERIVRVTGDMRQIEIAQEMIKEVLSQTVRPSTL 376
++ +G +I + D S ER + V G + A+ I + L + L
Sbjct: 292 KIEHETGTKITISSLQ----DLSIYNPERTITVRGTIEACANAEIEIMKKLREAFENDML 347
Query: 377 SGGFNQQA-------------YRPRVPTGPPQWGPRGSHPSQP 406
+ NQQA + + PP GPRG PS P
Sbjct: 348 A--VNQQANLIPGLNLSALGIFSTGLSVLPPPAGPRGVPPSPP 388
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 296 EQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTG 351
E V + +P + VG IIG+ G IK L +GA I++ P EG ER+V +TG
Sbjct: 421 ETVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAP---AEGPDVSERMVIITG 473
Score = 33.9 bits (76), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 298 VEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIE 357
+ I VP + VG IIG+ G TIK + ++ +R+ + H E G+ E+ V +
Sbjct: 189 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI---HRKENSGAAEKPVTIHATPEGTS 245
Query: 358 IAQEMIKEVLSQ 369
A MI E++ +
Sbjct: 246 EACRMILEIMQK 257
Score = 33.1 bits (74), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGT 255
++ + I VP++ G +IGK G T+ LQ + A++ + RD D + V IIG
Sbjct: 499 EEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEVIVPRDQTPDENEEV-IVRIIGH 557
Query: 256 LSNIDKAEKLINAVI 270
A++ I ++
Sbjct: 558 FFASQTAQRKIREIV 572
>sp|Q9Y6M1|IF2B2_HUMAN Insulin-like growth factor 2 mRNA-binding protein 2 OS=Homo sapiens
GN=IGF2BP2 PE=1 SV=2
Length = 599
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Query: 206 VPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADAD-PHAATRPVEIIGTLSNIDKAEK 264
+P VG +IGK G I+ L +GA I+I A A+ P + R V I G KA+
Sbjct: 434 IPTQAVGAIIGKKGAHIKQLARFAGASIKI---APAEGPDVSERMVIITGPPEAQFKAQG 490
Query: 265 LINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324
I + E + V + I+VP+ G +IG+GG+T+ LQ
Sbjct: 491 RIFGKLKEENFFNPKEEVKL------------EAHIRVPSSTAGRVIGKGGKTVNELQNL 538
Query: 325 SGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEV 366
+ A + + P D ++E IVR+ G + AQ I+E+
Sbjct: 539 TSAEVIVPRDQTP--DENEEVIVRIIGHFFASQTAQRKIREI 578
Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 21/132 (15%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKA 262
+I VP VG +IGK G TI+ + + +++ I R ++ AA +PV I T +A
Sbjct: 197 RILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSG--AAEKPVTIHATPEGTSEA 254
Query: 263 EKLINAVI-AEADAGGSPSLVARGLATAQASGAAEQVEIKVP--NEKVGLIIGRGGETIK 319
++I ++ EAD + AE++ +K+ N VG +IG+ G +K
Sbjct: 255 CRMILEIMQKEAD----------------ETKLAEEIPLKILAHNGLVGRLIGKEGRNLK 298
Query: 320 GLQTRSGARIQL 331
++ +G +I +
Sbjct: 299 KIEHETGTKITI 310
Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 60/206 (29%)
Query: 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTL-----S 257
KI N VG LIGK G ++ +++ +G KI I+ D + R + + GT+ +
Sbjct: 278 KILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSIYNPERTITVKGTVEACASA 337
Query: 258 NIDKAEKL-------INAVIAEADAGGSPSLVARGLATAQASGAA--------------- 295
I+ +KL + AV +A+ +L A G+ + S +
Sbjct: 338 EIEIMKKLREAFENDMLAVNQQANLIPGLNLSALGIFSTGLSVLSPPAGPRGAPPAAPYH 397
Query: 296 ------------------------------EQVEIKVPNEKVGLIIGRGGETIKGLQTRS 325
E V + +P + VG IIG+ G IK L +
Sbjct: 398 PFTTHSGYFSSLYPHHQFGPFPHHHSYPEQEIVNLFIPTQAVGAIIGKKGAHIKQLARFA 457
Query: 326 GARIQLIPQHLPEGDGSKERIVRVTG 351
GA I++ P EG ER+V +TG
Sbjct: 458 GASIKIAP---AEGPDVSERMVIITG 480
Score = 34.7 bits (78), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 288 TAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIV 347
T+QA + I VP + VG IIG+ G TIK + ++ +R+ + H E G+ E+ V
Sbjct: 186 TSQARQIDFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDI---HRKENSGAAEKPV 242
Query: 348 RVTGDMRQIEIAQEMIKEVLSQ 369
+ A MI E++ +
Sbjct: 243 TIHATPEGTSEACRMILEIMQK 264
>sp|Q15637|SF01_HUMAN Splicing factor 1 OS=Homo sapiens GN=SF1 PE=1 SV=4
Length = 639
Score = 34.7 bits (78), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 155 ETKEVTVKEEETVKEEESVEPSNVVPQQVVDNSKSDDPSSTD--DSTMSRKIEVPN---- 208
E K + +E T K+ E E N++ + V N P+ + +S K+ +P
Sbjct: 90 EGKRLNTREFRTRKKLEE-ERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEYP 148
Query: 209 --NKVGVLIGKAGDTIRYLQYNSGAKIQI 235
N VG+LIG G+T++ ++ AKI I
Sbjct: 149 EINFVGLLIGPRGNTLKNIEKECNAKIMI 177
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.306 0.127 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 354,711,463
Number of Sequences: 539616
Number of extensions: 18663035
Number of successful extensions: 83731
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 4144
Number of HSP's that attempted gapping in prelim test: 56360
Number of HSP's gapped (non-prelim): 17947
length of query: 784
length of database: 191,569,459
effective HSP length: 126
effective length of query: 658
effective length of database: 123,577,843
effective search space: 81314220694
effective search space used: 81314220694
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 65 (29.6 bits)