Query 003942
Match_columns 784
No_of_seqs 415 out of 1888
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 09:01:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 99.9 2.7E-27 9.1E-32 235.7 11.4 171 198-370 4-176 (178)
2 3krm_A Insulin-like growth fac 99.9 2.2E-26 7.6E-31 225.8 15.1 157 200-372 3-159 (163)
3 2jvz_A KH type-splicing, FAR u 99.9 2.2E-26 7.5E-31 225.6 13.6 160 200-370 2-161 (164)
4 1j4w_A FUSE binding protein; s 99.9 4.2E-26 1.4E-30 226.4 13.0 165 199-367 2-174 (174)
5 2jzx_A Poly(RC)-binding protei 99.9 3.4E-26 1.2E-30 223.8 12.1 157 198-369 3-159 (160)
6 1j4w_A FUSE binding protein; s 99.9 1.1E-22 3.8E-27 201.7 7.7 154 117-270 3-174 (174)
7 2anr_A Neuro-oncological ventr 99.9 1.4E-22 4.7E-27 201.6 7.5 157 116-273 5-176 (178)
8 3krm_A Insulin-like growth fac 99.9 4.4E-22 1.5E-26 195.2 10.9 154 117-274 3-158 (163)
9 2jvz_A KH type-splicing, FAR u 99.9 8.3E-22 2.8E-26 193.0 11.2 155 117-274 2-162 (164)
10 2jzx_A Poly(RC)-binding protei 99.9 3.6E-22 1.2E-26 195.2 7.7 154 115-272 3-159 (160)
11 3n89_A Defective in GERM LINE 99.9 1.6E-21 5.4E-26 213.0 13.4 223 115-367 28-259 (376)
12 2qnd_A FMR1 protein; KH domain 99.8 7.3E-20 2.5E-24 176.4 10.3 137 199-369 3-142 (144)
13 2e3u_A PH-DIM2P, hypothetical 99.8 1.5E-18 5.1E-23 177.9 11.3 144 198-369 32-191 (219)
14 1tua_A Hypothetical protein AP 99.7 4.6E-17 1.6E-21 163.1 10.5 141 201-369 5-160 (191)
15 2qnd_A FMR1 protein; KH domain 99.6 1.7E-16 5.8E-21 152.9 8.7 137 117-273 4-143 (144)
16 2e3u_A PH-DIM2P, hypothetical 99.6 7.8E-16 2.7E-20 157.7 4.6 147 116-272 33-191 (219)
17 2hh2_A KH-type splicing regula 99.5 1.9E-14 6.5E-19 131.7 7.3 76 296-372 7-82 (107)
18 1wvn_A Poly(RC)-binding protei 99.5 3.5E-14 1.2E-18 123.7 7.4 73 294-370 4-76 (82)
19 1zzk_A Heterogeneous nuclear r 99.5 5.5E-14 1.9E-18 122.5 8.6 72 294-369 5-76 (82)
20 2hh3_A KH-type splicing regula 99.5 3.1E-14 1.1E-18 130.0 7.1 73 296-372 11-83 (106)
21 1dtj_A RNA-binding neurooncolo 99.5 6E-14 2E-18 120.3 7.8 73 296-369 3-75 (76)
22 2axy_A Poly(RC)-binding protei 99.5 4.3E-14 1.5E-18 120.5 6.7 69 295-369 4-72 (73)
23 2p2r_A Poly(RC)-binding protei 99.5 4.3E-14 1.5E-18 121.3 6.7 71 295-369 4-74 (76)
24 1dtj_A RNA-binding neurooncolo 99.5 3.5E-14 1.2E-18 121.7 5.9 73 200-272 3-75 (76)
25 1x4n_A FAR upstream element bi 99.5 6E-14 2.1E-18 124.9 7.7 74 294-371 13-86 (92)
26 2opv_A KHSRP protein; KH domai 99.5 1.3E-13 4.5E-18 120.9 8.8 73 295-369 13-85 (85)
27 1tua_A Hypothetical protein AP 99.5 1.9E-14 6.4E-19 144.2 3.8 145 118-272 5-160 (191)
28 1x4m_A FAR upstream element bi 99.4 6.6E-14 2.3E-18 125.1 6.0 76 294-371 13-88 (94)
29 2axy_A Poly(RC)-binding protei 99.4 6.6E-14 2.2E-18 119.4 5.2 71 198-273 3-73 (73)
30 1j5k_A Heterogeneous nuclear r 99.4 7.7E-14 2.6E-18 123.4 5.9 73 294-370 12-84 (89)
31 2dgr_A Ring finger and KH doma 99.4 5.9E-14 2E-18 122.6 4.5 68 294-368 8-75 (83)
32 1ec6_A RNA-binding protein NOV 99.4 1.3E-13 4.5E-18 121.3 6.4 74 296-370 3-76 (87)
33 1zzk_A Heterogeneous nuclear r 99.4 2.7E-13 9.4E-18 118.0 8.3 74 197-273 4-77 (82)
34 1ec6_A RNA-binding protein NOV 99.4 9.9E-14 3.4E-18 122.2 5.5 75 200-274 3-77 (87)
35 2hh2_A KH-type splicing regula 99.4 1.5E-13 5E-18 125.8 6.0 74 201-274 8-81 (107)
36 1we8_A Tudor and KH domain con 99.4 2.6E-13 8.9E-18 123.5 7.5 75 294-370 13-87 (104)
37 2p2r_A Poly(RC)-binding protei 99.4 1.6E-13 5.5E-18 117.7 5.0 73 198-273 3-75 (76)
38 2opv_A KHSRP protein; KH domai 99.4 5.7E-13 2E-17 116.8 8.4 76 196-272 10-85 (85)
39 1x4n_A FAR upstream element bi 99.4 2.8E-13 9.7E-18 120.5 6.4 74 198-274 13-86 (92)
40 1wvn_A Poly(RC)-binding protei 99.4 2.9E-13 9.8E-18 117.9 5.9 73 198-273 4-76 (82)
41 1x4m_A FAR upstream element bi 99.4 3.8E-13 1.3E-17 120.2 6.4 78 196-274 11-88 (94)
42 1j5k_A Heterogeneous nuclear r 99.4 3E-13 1E-17 119.6 5.6 74 197-273 11-84 (89)
43 2hh3_A KH-type splicing regula 99.4 4.7E-13 1.6E-17 122.2 6.3 74 200-276 11-84 (106)
44 3n89_A Defective in GERM LINE 99.3 7E-13 2.4E-17 145.0 7.4 143 196-367 26-172 (376)
45 2dgr_A Ring finger and KH doma 99.3 4.9E-13 1.7E-17 116.8 4.7 71 197-273 7-77 (83)
46 1we8_A Tudor and KH domain con 99.3 1.7E-12 5.8E-17 118.1 8.4 78 196-274 11-88 (104)
47 1vig_A Vigilin; RNA-binding pr 99.3 1.6E-12 5.6E-17 110.1 6.3 68 294-367 3-70 (71)
48 2cte_A Vigilin; K homology typ 99.3 2.1E-12 7.3E-17 115.4 7.1 75 293-373 14-88 (94)
49 2ctl_A Vigilin; K homology typ 99.3 3.6E-12 1.2E-16 114.6 8.0 75 294-371 15-89 (97)
50 2ctm_A Vigilin; K homology typ 99.3 3.5E-12 1.2E-16 114.2 7.8 75 293-372 14-88 (95)
51 2ctf_A Vigilin; K homology typ 99.3 1.9E-12 6.7E-17 117.3 5.8 90 165-274 4-94 (102)
52 2ctl_A Vigilin; K homology typ 99.3 6.1E-12 2.1E-16 113.1 7.5 75 198-274 15-89 (97)
53 2ctk_A Vigilin; K homology typ 99.3 2.1E-12 7.1E-17 117.6 3.7 84 172-274 3-86 (104)
54 2cte_A Vigilin; K homology typ 99.2 1.1E-11 3.7E-16 110.8 8.0 74 197-275 14-87 (94)
55 1vig_A Vigilin; RNA-binding pr 99.2 5.7E-12 2E-16 106.8 5.0 68 198-270 3-70 (71)
56 2ctm_A Vigilin; K homology typ 99.2 2E-11 6.8E-16 109.3 8.4 74 197-274 14-87 (95)
57 2ctf_A Vigilin; K homology typ 99.2 5.1E-13 1.7E-17 121.1 -2.2 90 251-371 4-94 (102)
58 2ctk_A Vigilin; K homology typ 99.2 1.4E-11 4.7E-16 112.1 6.3 69 295-369 16-84 (104)
59 2ctj_A Vigilin; K homology typ 99.1 7E-11 2.4E-15 105.7 7.3 75 292-372 13-88 (95)
60 2ctj_A Vigilin; K homology typ 99.0 4.7E-10 1.6E-14 100.4 6.6 74 196-274 13-87 (95)
61 2cpq_A FragIle X mental retard 99.0 2.4E-10 8.2E-15 101.0 3.6 75 293-376 12-88 (91)
62 2cpq_A FragIle X mental retard 98.8 7.7E-10 2.6E-14 97.7 2.0 66 196-269 11-78 (91)
63 2yqr_A KIAA0907 protein; struc 98.8 7.7E-09 2.6E-13 96.0 8.0 75 296-370 12-100 (119)
64 1k1g_A SF1-BO isoform; splicin 98.8 1.4E-08 4.9E-13 95.9 8.4 78 294-371 5-101 (131)
65 1k1g_A SF1-BO isoform; splicin 98.7 1.1E-08 3.7E-13 96.7 6.9 76 198-273 5-100 (131)
66 2yqr_A KIAA0907 protein; struc 98.7 1.8E-08 6.3E-13 93.5 8.1 76 198-273 10-100 (119)
67 2bl5_A MGC83862 protein, quaki 98.4 2E-07 6.9E-12 88.7 5.6 73 297-369 3-101 (140)
68 2bl5_A MGC83862 protein, quaki 98.4 3.1E-07 1.1E-11 87.4 5.9 73 200-272 2-101 (140)
69 3u1k_A Polyribonucleotide nucl 98.2 8.6E-07 2.9E-11 103.6 7.0 63 295-367 566-629 (630)
70 3u1k_A Polyribonucleotide nucl 98.0 2.5E-06 8.4E-11 99.7 5.0 66 197-271 564-630 (630)
71 3v69_A Protein filia; RNA-bind 98.0 1.2E-05 4E-10 75.3 7.0 67 297-368 57-123 (140)
72 2cxc_A NUSA; transcription ter 97.9 4.6E-06 1.6E-10 79.8 3.3 104 200-332 36-139 (144)
73 4aid_A Polyribonucleotide nucl 97.8 1.1E-05 3.8E-10 95.3 4.4 68 295-372 569-637 (726)
74 4aid_A Polyribonucleotide nucl 97.5 3.1E-05 1.1E-09 91.6 3.5 68 198-274 568-636 (726)
75 3v69_A Protein filia; RNA-bind 97.4 0.00023 8E-09 66.6 6.3 70 200-273 56-125 (140)
76 2cxc_A NUSA; transcription ter 97.2 1.6E-05 5.3E-10 76.1 -3.6 104 116-236 35-139 (144)
77 2asb_A Transcription elongatio 96.9 0.00078 2.7E-08 69.8 5.5 104 201-334 113-222 (251)
78 1k0r_A NUSA; two component arr 96.8 0.00089 3E-08 73.0 5.6 105 200-334 235-345 (366)
79 3cdi_A Polynucleotide phosphor 96.8 0.00042 1.4E-08 82.2 2.7 66 295-370 559-625 (723)
80 2asb_A Transcription elongatio 96.6 0.00082 2.8E-08 69.6 3.1 97 126-239 126-223 (251)
81 1e3p_A Guanosine pentaphosphat 96.5 0.0003 1E-08 83.8 -1.4 62 296-367 598-660 (757)
82 3cdi_A Polynucleotide phosphor 96.4 0.00074 2.5E-08 80.1 1.0 67 198-273 558-625 (723)
83 1k0r_A NUSA; two component arr 96.2 0.0018 6.3E-08 70.5 2.6 97 126-239 249-346 (366)
84 1hh2_P NUSA, N utilization sub 96.1 0.0058 2E-07 66.3 6.2 95 209-333 245-340 (344)
85 1e3p_A Guanosine pentaphosphat 95.6 0.0016 5.3E-08 77.7 -1.1 64 198-270 596-660 (757)
86 1hh2_P NUSA, N utilization sub 94.4 0.017 5.9E-07 62.6 2.9 96 126-238 245-341 (344)
87 2pt7_G HP1451, hypothetical pr 87.6 0.12 4.3E-06 49.6 0.5 94 172-272 3-98 (152)
88 4hhu_A OR280; engineered prote 86.9 9.8 0.00033 34.6 12.3 46 221-273 23-68 (170)
89 3gku_A Probable RNA-binding pr 81.2 0.25 8.6E-06 50.4 -0.6 59 173-231 63-123 (225)
90 3gku_A Probable RNA-binding pr 79.3 0.99 3.4E-05 46.0 3.0 64 259-330 63-126 (225)
91 1wh9_A 40S ribosomal protein S 78.0 0.92 3.1E-05 39.8 2.1 30 294-323 33-62 (92)
92 2pt7_G HP1451, hypothetical pr 76.8 0.87 3E-05 43.7 1.7 31 295-325 32-62 (152)
93 2xzm_C KH domain containing pr 70.9 2.3 8E-05 43.7 3.2 31 294-324 45-75 (243)
94 3iz6_B 40S ribosomal protein S 70.1 2.1 7.3E-05 43.6 2.7 59 257-324 14-72 (227)
95 3u5c_D RP13, YS3, 40S ribosoma 66.6 2.8 9.5E-05 43.0 2.7 30 295-324 43-72 (240)
96 2ba0_A Archeal exosome RNA bin 64.7 7.2 0.00025 39.7 5.4 58 202-268 138-195 (229)
97 2z0s_A Probable exosome comple 61.7 12 0.00041 38.1 6.4 58 202-268 150-208 (235)
98 3af5_A Putative uncharacterize 58.8 8.8 0.0003 44.9 5.5 95 213-333 50-144 (651)
99 3iev_A GTP-binding protein ERA 58.4 4.7 0.00016 42.5 2.8 37 296-332 240-285 (308)
100 1wh9_A 40S ribosomal protein S 57.9 3 0.0001 36.5 1.0 29 200-228 35-63 (92)
101 2ba0_A Archeal exosome RNA bin 56.8 15 0.00052 37.3 6.2 57 298-364 138-194 (229)
102 3eik_A Tata-box-binding protei 56.7 61 0.0021 32.7 10.4 27 345-371 188-216 (218)
103 2xr1_A Cleavage and polyadenyl 55.3 5.8 0.0002 46.4 3.1 95 213-333 45-139 (640)
104 4e9j_A General secretion pathw 54.8 92 0.0032 31.4 11.8 96 230-366 139-240 (246)
105 3j20_C 30S ribosomal protein S 53.0 6.3 0.00022 39.7 2.5 29 295-323 39-67 (210)
106 3af5_A Putative uncharacterize 52.0 8 0.00027 45.3 3.6 94 129-237 49-144 (651)
107 2zkq_c 40S ribosomal protein S 51.5 4.5 0.00015 41.6 1.2 31 294-324 42-72 (243)
108 2ycb_A Beta-CAsp RNAse, cleava 50.7 11 0.00037 44.0 4.4 95 213-333 41-135 (636)
109 1ytb_A Protein (tata binding p 46.9 1E+02 0.0035 30.1 10.0 26 248-273 59-86 (180)
110 2ja9_A Exosome complex exonucl 45.5 17 0.00059 35.4 4.2 45 202-255 93-138 (175)
111 3i1m_C 30S ribosomal protein S 45.4 7.3 0.00025 39.8 1.6 37 295-331 61-101 (233)
112 3r8n_C 30S ribosomal protein S 44.3 7.1 0.00024 39.2 1.3 38 295-332 60-101 (206)
113 3iz6_B 40S ribosomal protein S 43.7 7 0.00024 39.8 1.2 30 199-228 43-72 (227)
114 2z0s_A Probable exosome comple 43.5 44 0.0015 33.9 7.1 59 298-366 150-209 (235)
115 2y9k_A Protein INVG; protein t 43.2 1.3E+02 0.0045 27.5 9.8 112 220-366 11-133 (137)
116 2xr1_A Cleavage and polyadenyl 42.1 10 0.00034 44.3 2.3 93 130-237 45-139 (640)
117 2ycb_A Beta-CAsp RNAse, cleava 41.8 9.4 0.00032 44.5 2.0 94 129-237 40-135 (636)
118 2vqe_C 30S ribosomal protein S 40.2 8.9 0.0003 39.3 1.3 28 201-228 63-90 (239)
119 3io0_A ETUB protein; tamdem re 40.0 1.4E+02 0.0049 30.2 10.0 126 224-366 58-210 (230)
120 3ezj_A General secretion pathw 39.9 1E+02 0.0035 30.9 9.3 59 199-269 107-166 (241)
121 2nn6_G Exosome complex exonucl 38.0 11 0.00037 39.8 1.5 45 202-255 212-256 (289)
122 2vqe_C 30S ribosomal protein S 38.0 12 0.0004 38.4 1.8 29 296-324 62-90 (239)
123 3iev_A GTP-binding protein ERA 37.7 19 0.00065 37.7 3.5 38 199-236 239-285 (308)
124 1in0_A YAJQ protein, HI1034; a 36.5 2.9E+02 0.01 26.4 11.5 40 317-365 109-149 (163)
125 3u27_C Microcompartments prote 36.4 2.9E+02 0.01 27.7 11.6 139 224-372 56-215 (220)
126 1rm1_A Tata-box binding protei 35.7 1.6E+02 0.0056 29.9 9.9 26 248-273 119-146 (240)
127 2xzm_C KH domain containing pr 35.6 9.1 0.00031 39.3 0.5 29 200-228 47-75 (243)
128 2jpw_A Troponin I, cardiac mus 35.1 8.8 0.0003 26.4 0.2 20 1-20 1-22 (32)
129 2kl8_A OR15; structural genomi 34.7 67 0.0023 26.1 5.3 26 247-272 41-66 (85)
130 3j20_C 30S ribosomal protein S 32.6 8.7 0.0003 38.7 -0.2 27 201-227 41-67 (210)
131 1ega_A Protein (GTP-binding pr 31.9 28 0.00097 36.2 3.6 34 298-331 233-275 (301)
132 3gr5_A ESCC; secretin, type II 31.8 1.3E+02 0.0043 28.5 7.9 115 220-367 27-150 (156)
133 2zkq_c 40S ribosomal protein S 31.7 6.8 0.00023 40.3 -1.2 29 200-228 44-72 (243)
134 1wf3_A GTP-binding protein; GT 31.2 19 0.00063 37.8 2.0 34 299-332 233-275 (301)
135 3eik_A Tata-box-binding protei 31.2 78 0.0027 31.9 6.5 103 162-273 97-215 (218)
136 3r8n_C 30S ribosomal protein S 31.0 8.2 0.00028 38.7 -0.7 28 201-228 62-89 (206)
137 3lkz_A Non-structural protein 30.7 38 0.0013 35.9 4.2 67 198-273 198-264 (321)
138 3u5c_D RP13, YS3, 40S ribosoma 30.1 15 0.00052 37.5 1.1 29 200-228 44-72 (240)
139 4e9j_A General secretion pathw 29.3 1.4E+02 0.0047 30.1 8.2 87 160-268 147-239 (246)
140 3i1m_C 30S ribosomal protein S 29.2 8.7 0.0003 39.2 -0.9 28 201-228 63-90 (233)
141 1ytb_A Protein (tata binding p 29.2 1E+02 0.0035 30.0 6.8 101 162-273 59-177 (180)
142 2kie_A Inositol polyphosphate 29.0 1.3E+02 0.0043 27.2 6.6 57 206-271 61-118 (124)
143 2je6_I RRP4, exosome complex R 28.3 7.6 0.00026 40.1 -1.6 43 203-254 158-200 (251)
144 4aqn_A Pesticin; toxin, bacter 28.2 9.9 0.00034 40.5 -0.7 26 197-222 177-202 (357)
145 3tgv_A Heme-binding protein HU 28.0 17 0.00059 33.9 1.0 56 297-352 32-87 (148)
146 1o4u_A Type II quinolic acid p 25.3 3E+02 0.01 28.6 10.0 99 258-369 12-112 (285)
147 1rm1_A Tata-box binding protei 24.5 1.2E+02 0.0042 30.9 6.6 26 248-273 210-237 (240)
148 3bbn_C Ribosomal protein S3; s 24.4 18 0.00061 36.6 0.4 54 264-324 37-98 (218)
149 3n79_A PDUT; FES cluster, BMC 24.4 4.1E+02 0.014 26.0 10.2 135 223-369 21-160 (192)
150 1wf3_A GTP-binding protein; GT 23.5 50 0.0017 34.5 3.6 35 202-236 232-275 (301)
151 3oss_D Type 2 secretion system 23.2 4.9E+02 0.017 24.9 10.6 113 220-366 20-178 (181)
152 2ja9_A Exosome complex exonucl 22.1 60 0.002 31.5 3.6 45 298-352 93-138 (175)
153 3p8z_A Mtase, non-structural p 21.9 1.6E+02 0.0053 30.4 6.7 64 198-272 180-245 (267)
154 2b7n_A Probable nicotinate-nuc 21.8 4.2E+02 0.014 27.1 10.3 53 314-368 45-98 (273)
155 2fgc_A Acetolactate synthase, 21.7 34 0.0012 33.9 1.8 92 165-267 76-167 (193)
156 1j27_A Hypothetical protein TT 21.4 1.1E+02 0.0036 27.2 4.8 71 200-273 8-81 (102)
157 1o4u_A Type II quinolic acid p 21.0 1.4E+02 0.0048 31.2 6.4 98 171-273 11-113 (285)
158 2iab_A Hypothetical protein; N 20.6 1.3E+02 0.0046 27.7 5.7 81 259-354 10-91 (155)
159 3dhx_A Methionine import ATP-b 20.6 71 0.0024 28.1 3.5 41 222-268 38-87 (106)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.94 E-value=2.7e-27 Score=235.69 Aligned_cols=171 Identities=32% Similarity=0.468 Sum_probs=136.5
Q ss_pred CCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhhcCC
Q 003942 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGG 277 (784)
Q Consensus 198 ~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~~~g 277 (784)
..++++|+||.+++|+||||+|++||+|+++|||+|+|.++.+..+++.+|+|+|+|+.++|.+|+.+|.+++.+.....
T Consensus 4 ~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~~~ 83 (178)
T 2anr_A 4 SQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNV 83 (178)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCCC-
T ss_pred CCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCCcc
Confidence 46899999999999999999999999999999999999876555677889999999999999999999999998753211
Q ss_pred CCcccccccch--hhccCCccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHH
Q 003942 278 SPSLVARGLAT--AQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQ 355 (784)
Q Consensus 278 ~p~~~~~g~~~--~~~~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~q 355 (784)
.......-+.+ ........+++|+||.+++|+||||+|++||+|+++|||+|+|..+. ....+.+|+|+|+|+.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~--~~~~~~~~~v~I~G~~~~ 161 (178)
T 2anr_A 84 AKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKP--DGINLQNRVVTVSGEPEQ 161 (178)
T ss_dssp ----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC------CCEEEEEEESSHHH
T ss_pred ccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCC--CCCCCCceEEEEEcCHHH
Confidence 00000000000 00112347889999999999999999999999999999999997643 223467899999999999
Q ss_pred HHHHHHHHHHHHhcc
Q 003942 356 IEIAQEMIKEVLSQT 370 (784)
Q Consensus 356 V~~Ak~lI~~~L~~~ 370 (784)
|++|+.||.++|.+.
T Consensus 162 v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 162 NRKAVELIIQKIQED 176 (178)
T ss_dssp HHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999999753
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.94 E-value=2.2e-26 Score=225.75 Aligned_cols=157 Identities=28% Similarity=0.441 Sum_probs=134.4
Q ss_pred eEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhhcCCCC
Q 003942 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSP 279 (784)
Q Consensus 200 ~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~~~g~p 279 (784)
.+++|+||.+++|+||||+|++||+|+++|||+|+|..+. .+++.+|+|+|+|+.++|.+|+.+|+++|.+......
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~--~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~~~- 79 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPE--TPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENFFGP- 79 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCS--STTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSSCS-
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHhccccccc-
Confidence 5899999999999999999999999999999999998742 4577899999999999999999999999988632110
Q ss_pred cccccccchhhccCCccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHH
Q 003942 280 SLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIA 359 (784)
Q Consensus 280 ~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~A 359 (784)
......+.+|.||.+++|+||||+|++||+|+++|||+|.|.++.++ ....++.|+|+|+.++|++|
T Consensus 80 -----------~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~--~~~~~~~v~I~G~~~~v~~A 146 (163)
T 3krm_A 80 -----------KEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTP--DENDQVIVKIIGHFYASQMA 146 (163)
T ss_dssp -----------SCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCC--CTTSEEEEEEEECHHHHHHH
T ss_pred -----------ccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCC--CCCCceEEEEEeCHHHHHHH
Confidence 01234567999999999999999999999999999999999876533 23445689999999999999
Q ss_pred HHHHHHHHhcccC
Q 003942 360 QEMIKEVLSQTVR 372 (784)
Q Consensus 360 k~lI~~~L~~~~r 372 (784)
+.||+++|++..+
T Consensus 147 ~~~I~~~i~~~~~ 159 (163)
T 3krm_A 147 QRKIRDILAQVKQ 159 (163)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987554
No 3
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.93 E-value=2.2e-26 Score=225.58 Aligned_cols=160 Identities=31% Similarity=0.554 Sum_probs=132.8
Q ss_pred eEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhhcCCCC
Q 003942 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSP 279 (784)
Q Consensus 200 ~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~~~g~p 279 (784)
++++|+||.+++|+||||+|++||+|+++|||+|+|..+. ..+.+.+|+|+|+|+.++|.+|+.+|+++|.+....+..
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~-~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~~~~ 80 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDG-SQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFG 80 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCT-TSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSCCCS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCC-CCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCCCCC
Confidence 6889999999999999999999999999999999998653 234567899999999999999999999999876432211
Q ss_pred cccccccchhhccCCccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHH
Q 003942 280 SLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIA 359 (784)
Q Consensus 280 ~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~A 359 (784)
.....+ .....+++|.||.+++|+||||+|++||+|+++|||+|.|.+.. +.+.+|+|+|+|+.++|++|
T Consensus 81 ~~~~~~------~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~----~~~~~~~v~I~G~~~~v~~A 150 (164)
T 2jvz_A 81 DRNEYG------SRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD----GTGPEKIAHIMGPPDRCEHA 150 (164)
T ss_dssp SCSSCT------TSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC----TTSSEEEEEEESCHHHHHHH
T ss_pred CccccC------CCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC----CCCCcEEEEEEcCHHHHHHH
Confidence 110000 01124578999999999999999999999999999999997642 34568999999999999999
Q ss_pred HHHHHHHHhcc
Q 003942 360 QEMIKEVLSQT 370 (784)
Q Consensus 360 k~lI~~~L~~~ 370 (784)
+.||+++|++.
T Consensus 151 ~~~I~~~i~~~ 161 (164)
T 2jvz_A 151 ARIINDLLQSL 161 (164)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhh
Confidence 99999999753
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.93 E-value=4.2e-26 Score=226.36 Aligned_cols=165 Identities=30% Similarity=0.536 Sum_probs=130.5
Q ss_pred CeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhhcCCC
Q 003942 199 TMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGS 278 (784)
Q Consensus 199 ~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~~~g~ 278 (784)
..+++|+||.+++|+||||+|++||+|+++|||+|+|..+ ...+.+|+|+|+|+.++|.+|+++|+++|.+...+..
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~---~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~ 78 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPD---DGTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGNP 78 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECC---TTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC----
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecC---CCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCCC
Confidence 4689999999999999999999999999999999999853 2356789999999999999999999999988743211
Q ss_pred Cc--ccccccchh------hccCCccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEE
Q 003942 279 PS--LVARGLATA------QASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVT 350 (784)
Q Consensus 279 p~--~~~~g~~~~------~~~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~ 350 (784)
.. ...+++... .......+++|.||.+++|+||||+|++||+|+++|||+|+|.++.. ...++.+|+|+|+
T Consensus 79 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~-~~~~~~~~~v~I~ 157 (174)
T 1j4w_A 79 GGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPP-PNADPNMKLFTIR 157 (174)
T ss_dssp -------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCT-TTSCTTEEEEEEE
T ss_pred CCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCC-CCCCCCceEEEEE
Confidence 00 000000000 00123468899999999999999999999999999999999986542 3445778999999
Q ss_pred cCHHHHHHHHHHHHHHH
Q 003942 351 GDMRQIEIAQEMIKEVL 367 (784)
Q Consensus 351 Gt~~qV~~Ak~lI~~~L 367 (784)
|+.++|++|++||+++|
T Consensus 158 G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 158 GTPQQIDYARQLIEEKI 174 (174)
T ss_dssp CCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999999875
No 5
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.93 E-value=3.4e-26 Score=223.78 Aligned_cols=157 Identities=27% Similarity=0.438 Sum_probs=133.3
Q ss_pred CCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhhcCC
Q 003942 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGG 277 (784)
Q Consensus 198 ~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~~~g 277 (784)
..++++|+||.+++|+||||+|++||+|+++|||+|+|... ++.+|.|+|+|+.++|.+|+.+|+++|.+.....
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~-----~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~~~ 77 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSS 77 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC-----TTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHTSC
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC-----CCCceEEEEEeCHHHHHHHHHHHHHHHHhhcccc
Confidence 45799999999999999999999999999999999999864 3568999999999999999999999998864321
Q ss_pred CCcccccccchhhccCCccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHH
Q 003942 278 SPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIE 357 (784)
Q Consensus 278 ~p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~ 357 (784)
... .. .......+++|.||.+++|+||||+|++||+|+++|||+|+|..+.++ .+.+|+|+|+|+.++|+
T Consensus 78 ~~~----~~---~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~---~~~~~~v~I~G~~~~v~ 147 (160)
T 2jzx_A 78 MTN----ST---AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLP---NSTERAITIAGIPQSII 147 (160)
T ss_dssp CCS----SS---CCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCST---TCCEEEEEEEECHHHHH
T ss_pred CCC----Cc---cCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCC---CCCceEEEEEcCHHHHH
Confidence 100 00 011234689999999999999999999999999999999999765433 46799999999999999
Q ss_pred HHHHHHHHHHhc
Q 003942 358 IAQEMIKEVLSQ 369 (784)
Q Consensus 358 ~Ak~lI~~~L~~ 369 (784)
+|+++|.++|.+
T Consensus 148 ~A~~~I~~~i~e 159 (160)
T 2jzx_A 148 ECVKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999998865
No 6
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.87 E-value=1.1e-22 Score=201.65 Aligned_cols=154 Identities=19% Similarity=0.287 Sum_probs=129.1
Q ss_pred cceeeeccccccccccCCCchhhhhhhcccCceeeecccccccccceeeecCchhchhhhhhhhhHhhhcCCCCCCC---
Q 003942 117 QHSSVEEQASVDNQQISVKEETKEVLFSTEEAFIDVKEETKEVTVKEEETVKEEESVEPSNVVPQQVVDNSKSDDPS--- 193 (784)
Q Consensus 117 ~~~ki~iP~~~vg~iIGk~Ge~Ik~iq~~s~a~I~I~~~~~~~s~r~~~i~G~~e~Ve~A~~lI~~ii~~~~~~~~~--- 193 (784)
.+.+++||.++++.||||+|++|++|+++++++|+|.+....+.+|.+.|+|..++|++|+.+|.+++.+.......
T Consensus 3 ~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~~~~ 82 (174)
T 1j4w_A 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGNPGGPG 82 (174)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC--------
T ss_pred eEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCCCCCCC
Confidence 46789999999999999999999999999999999987666677899999999999999999999998744311100
Q ss_pred ---------------CCCCCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhh
Q 003942 194 ---------------STDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSN 258 (784)
Q Consensus 194 ---------------~~~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~ 258 (784)
......++++|+||.+++|+||||+|++||+|+++|||+|+|.++......+.+|.|+|+|+.++
T Consensus 83 p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~ 162 (174)
T 1j4w_A 83 PGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQ 162 (174)
T ss_dssp ---------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHH
T ss_pred CCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHH
Confidence 00123468999999999999999999999999999999999987543333467899999999999
Q ss_pred HHHHHHHHHHHH
Q 003942 259 IDKAEKLINAVI 270 (784)
Q Consensus 259 V~kA~~~I~elI 270 (784)
|++|+.+|+++|
T Consensus 163 v~~A~~~I~~~i 174 (174)
T 1j4w_A 163 IDYARQLIEEKI 174 (174)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999999875
No 7
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.86 E-value=1.4e-22 Score=201.65 Aligned_cols=157 Identities=21% Similarity=0.203 Sum_probs=131.9
Q ss_pred ccceeeeccccccccccCCCchhhhhhhcccCceeeeccccc---ccccceeeecCchhchhhhhhhhhHhhhcCCCCCC
Q 003942 116 EQHSSVEEQASVDNQQISVKEETKEVLFSTEEAFIDVKEETK---EVTVKEEETVKEEESVEPSNVVPQQVVDNSKSDDP 192 (784)
Q Consensus 116 ~~~~ki~iP~~~vg~iIGk~Ge~Ik~iq~~s~a~I~I~~~~~---~~s~r~~~i~G~~e~Ve~A~~lI~~ii~~~~~~~~ 192 (784)
+.+.+++||.++++.||||+|++|+.|+++++++|+|.+... .+.+|.+.|+|+.++|++|+.+|.+++.+......
T Consensus 5 ~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~ 84 (178)
T 2anr_A 5 QYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEALNAVHGFIAEKIREMPQNVA 84 (178)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCCCC--
T ss_pred CEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccCCccc
Confidence 567899999999999999999999999999999999987542 46679999999999999999999999975432111
Q ss_pred C------------CCCCCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHH
Q 003942 193 S------------STDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNID 260 (784)
Q Consensus 193 ~------------~~~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~ 260 (784)
. ......++++|+||.+++|+||||+|++||+|+++|||+|+|.++. ..+.+.+|.|+|+|+.++|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~-~~~~~~~~~v~I~G~~~~v~ 163 (178)
T 2anr_A 85 KTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKP-DGINLQNRVVTVSGEPEQNR 163 (178)
T ss_dssp ---------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-----CCEEEEEEESSHHHHH
T ss_pred cCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCC-CCCCCCceEEEEEcCHHHHH
Confidence 0 0112357899999999999999999999999999999999998753 23456789999999999999
Q ss_pred HHHHHHHHHHHhh
Q 003942 261 KAEKLINAVIAEA 273 (784)
Q Consensus 261 kA~~~I~elI~e~ 273 (784)
+|+.+|+++|+++
T Consensus 164 ~A~~~I~~~i~e~ 176 (178)
T 2anr_A 164 KAVELIIQKIQED 176 (178)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999874
No 8
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.86 E-value=4.4e-22 Score=195.16 Aligned_cols=154 Identities=21% Similarity=0.238 Sum_probs=132.9
Q ss_pred cceeeeccccccccccCCCchhhhhhhcccCceeeecccc-cccccceeeecCchhchhhhhhhhhHhhhcCCCCCCCCC
Q 003942 117 QHSSVEEQASVDNQQISVKEETKEVLFSTEEAFIDVKEET-KEVTVKEEETVKEEESVEPSNVVPQQVVDNSKSDDPSST 195 (784)
Q Consensus 117 ~~~ki~iP~~~vg~iIGk~Ge~Ik~iq~~s~a~I~I~~~~-~~~s~r~~~i~G~~e~Ve~A~~lI~~ii~~~~~~~~~~~ 195 (784)
...+++||.+.++.||||+|++|+.|+++++++|+|.+.. ..+.+|.+.|+|+.+++.+|+.+|.+++.......+.
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~~~~-- 80 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENFFGPK-- 80 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSSCSS--
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccccccc--
Confidence 3578999999999999999999999999999999999874 3677899999999999999999999988755332221
Q ss_pred CCCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCC-CcEEEecchhhHHHHHHHHHHHHHhhh
Q 003942 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAAT-RPVEIIGTLSNIDKAEKLINAVIAEAD 274 (784)
Q Consensus 196 ~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~e-R~V~I~G~~e~V~kA~~~I~elI~e~~ 274 (784)
....++.+|+||.+++|+||||+|++||+|+++|||+|+|.++. .+++.+ +.|+|+|+.++|++|+++|+++|++..
T Consensus 81 ~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~--~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~~ 158 (163)
T 3krm_A 81 EEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQ--TPDENDQVIVKIIGHFYASQMAQRKIRDILAQVK 158 (163)
T ss_dssp CCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTC--CCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHHT
T ss_pred cCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCC--CCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHHH
Confidence 23457889999999999999999999999999999999998653 334444 489999999999999999999999863
No 9
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.86 E-value=8.3e-22 Score=193.00 Aligned_cols=155 Identities=17% Similarity=0.241 Sum_probs=130.4
Q ss_pred cceeeeccccccccccCCCchhhhhhhcccCceeeeccccc--ccccceeeecCchhchhhhhhhhhHhhhcCCCCCCCC
Q 003942 117 QHSSVEEQASVDNQQISVKEETKEVLFSTEEAFIDVKEETK--EVTVKEEETVKEEESVEPSNVVPQQVVDNSKSDDPSS 194 (784)
Q Consensus 117 ~~~ki~iP~~~vg~iIGk~Ge~Ik~iq~~s~a~I~I~~~~~--~~s~r~~~i~G~~e~Ve~A~~lI~~ii~~~~~~~~~~ 194 (784)
+..+++||.+.++.||||+|++|+.|+++++++|+|..+.. .+.+|.+.|.|+.++|++|+.+|.+++.+........
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~~~~~ 81 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQGGFGD 81 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSCCCSS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 35689999999999999999999999999999999976542 4557899999999999999999999997543211100
Q ss_pred ----CCCCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHH
Q 003942 195 ----TDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVI 270 (784)
Q Consensus 195 ----~~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI 270 (784)
.....++++|+||.+++|+||||+|++||+|+++|||+|+|.++. ..+.+|.|+|+|+.++|++|+.+|+++|
T Consensus 82 ~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~---~~~~~~~v~I~G~~~~v~~A~~~I~~~i 158 (164)
T 2jvz_A 82 RNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---GTGPEKIAHIMGPPDRCEHAARIINDLL 158 (164)
T ss_dssp CSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC---TTSSEEEEEEESCHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC---CCCCcEEEEEEcCHHHHHHHHHHHHHHH
Confidence 011135689999999999999999999999999999999998653 3456799999999999999999999999
Q ss_pred Hhhh
Q 003942 271 AEAD 274 (784)
Q Consensus 271 ~e~~ 274 (784)
++.+
T Consensus 159 ~~~~ 162 (164)
T 2jvz_A 159 QSLR 162 (164)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 8864
No 10
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.85 E-value=3.6e-22 Score=195.15 Aligned_cols=154 Identities=19% Similarity=0.256 Sum_probs=132.3
Q ss_pred cccceeeeccccccccccCCCchhhhhhhcccCceeeecccccccccceeeecCchhchhhhhhhhhHhhhcCCCCC---
Q 003942 115 TEQHSSVEEQASVDNQQISVKEETKEVLFSTEEAFIDVKEETKEVTVKEEETVKEEESVEPSNVVPQQVVDNSKSDD--- 191 (784)
Q Consensus 115 ~~~~~ki~iP~~~vg~iIGk~Ge~Ik~iq~~s~a~I~I~~~~~~~s~r~~~i~G~~e~Ve~A~~lI~~ii~~~~~~~--- 191 (784)
.....+++||..+++.||||+|++|+.|+++++++|+|.+. .+.+|.+.|.|..++|++|+.+|.+++.+.....
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~~~~~~ 80 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEEDISSSMTN 80 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHHHHHHHHHHHHHHHHHHTSCCCS
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHHHHHHHHHHHHHHHhhccccCCC
Confidence 35677999999999999999999999999999999999876 3557899999999999999999988876421110
Q ss_pred CCCCCCCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHH
Q 003942 192 PSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIA 271 (784)
Q Consensus 192 ~~~~~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~ 271 (784)
........++++|+||.+++|+||||+|++||+|+++|||+|+|.++ ..+++.++.|+|+|+.++|.+|+++|+++|.
T Consensus 81 ~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~--~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~ 158 (160)
T 2jzx_A 81 STAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD--MLPNSTERAITIAGIPQSIIECVKQICVVML 158 (160)
T ss_dssp SSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC--CSTTCCEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC--CCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Confidence 11112346899999999999999999999999999999999999864 3567789999999999999999999999998
Q ss_pred h
Q 003942 272 E 272 (784)
Q Consensus 272 e 272 (784)
|
T Consensus 159 e 159 (160)
T 2jzx_A 159 E 159 (160)
T ss_dssp H
T ss_pred c
Confidence 7
No 11
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.85 E-value=1.6e-21 Score=212.97 Aligned_cols=223 Identities=9% Similarity=0.087 Sum_probs=168.1
Q ss_pred cccceeeeccccccccccCCCc--hhhhhhhcccCceeeecccc--c---ccccceeeecCchhchhhhhhhhhHhhhcC
Q 003942 115 TEQHSSVEEQASVDNQQISVKE--ETKEVLFSTEEAFIDVKEET--K---EVTVKEEETVKEEESVEPSNVVPQQVVDNS 187 (784)
Q Consensus 115 ~~~~~ki~iP~~~vg~iIGk~G--e~Ik~iq~~s~a~I~I~~~~--~---~~s~r~~~i~G~~e~Ve~A~~lI~~ii~~~ 187 (784)
+.++.++.|+...+..||||+| ++|++|+++++++|++.+.+ . ......+.|+|..++|++|+..|.+++
T Consensus 28 ~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~--- 104 (376)
T 3n89_A 28 TRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNC--- 104 (376)
T ss_dssp TEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSC---
T ss_pred CEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcC---
Confidence 3677899999999999999999 99999999999999998876 1 245578999999999999999998866
Q ss_pred CCCCCCCCCCCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHH
Q 003942 188 KSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLIN 267 (784)
Q Consensus 188 ~~~~~~~~~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~ 267 (784)
.+++.|.++...+.. .+...+|++ ++..+++|.|....+.. ......|+|+|...+|++|++.+.
T Consensus 105 -----------Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~-~~~sd~V~IrG~~~nv~~akeA~~ 169 (376)
T 3n89_A 105 -----------HFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKN-GIVTTYLRITAREKNQHELIEAAK 169 (376)
T ss_dssp -----------EEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC------CEEEEEEEEEGGGHHHHHHHHH
T ss_pred -----------CceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCccccc-CCCCCEEEEEcChhhHHHHHHHHH
Confidence 356777777655443 222345655 67899999986542211 112457999999999988888877
Q ss_pred HHHHhhhcCCCCcccccccchhhccCCccEEEEEecCCceeeeecCCc--hHHHHHHHHhCCeEEeccCCCCCCCCCCce
Q 003942 268 AVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGG--ETIKGLQTRSGARIQLIPQHLPEGDGSKER 345 (784)
Q Consensus 268 elI~e~~~~g~p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGkgG--~~IK~Iq~~SGarIqI~~~~~p~~~~~~er 345 (784)
.+++...... .......+++|.|+...+.+||||+| ..|++|+++|||+|.|.+............
T Consensus 170 ~Ll~~l~~~e------------~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~ 237 (376)
T 3n89_A 170 RLNEILFRES------------PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIY 237 (376)
T ss_dssp HHHHHHCC--------------CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEE
T ss_pred HHHHHHHhhh------------cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCce
Confidence 7776642210 01124578899999999999999999 677999999999999965321111112356
Q ss_pred EEEEEcCHHHHHHHHHHHHHHH
Q 003942 346 IVRVTGDMRQIEIAQEMIKEVL 367 (784)
Q Consensus 346 ~V~I~Gt~~qV~~Ak~lI~~~L 367 (784)
.|+|+|+.++|+.|+++|+++|
T Consensus 238 ~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 238 EIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp EEEEESCHHHHHHHHHHHHHTS
T ss_pred EEEEEeCHHHHHHHHHHHHhhC
Confidence 8999999999999999999987
No 12
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.80 E-value=7.3e-20 Score=176.42 Aligned_cols=137 Identities=19% Similarity=0.258 Sum_probs=106.3
Q ss_pred CeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhhcCCC
Q 003942 199 TMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGS 278 (784)
Q Consensus 199 ~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~~~g~ 278 (784)
.++++|+||...||++||++|++||.|++++|++|....+ ..++.+...++++.|.+|+.+|. .
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~------~~~~~i~~~~~p~~v~~~~~~l~-----~----- 66 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDE------DTCTFHIYGEDQDAVKKARSFLE-----F----- 66 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEET------TTTEEEEEESSHHHHHHHHHHHC-----E-----
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCC------CchheeeccCCHHHHHHHHHhhh-----c-----
Confidence 4789999999999999999999999999999955444322 12334444447888888765331 1
Q ss_pred CcccccccchhhccCCccEEEEEecCCceeeeecCCchHHHHHHHHhCC-eEEeccCCCCCCCCCCc--eEEEEEcCHHH
Q 003942 279 PSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGA-RIQLIPQHLPEGDGSKE--RIVRVTGDMRQ 355 (784)
Q Consensus 279 p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGa-rIqI~~~~~p~~~~~~e--r~V~I~Gt~~q 355 (784)
...+|.||.+++|++|||+|+|||.|++.||| +|.|..+..... ..++ +.|+|+|+.++
T Consensus 67 -----------------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~-~~~~~~~~vtI~G~~~~ 128 (144)
T 2qnd_A 67 -----------------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV-PQEEGMVPFVFVGTKDS 128 (144)
T ss_dssp -----------------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC-CCCTTEEEEEEEEEHHH
T ss_pred -----------------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc-cccCCeeEEEEEeCHHH
Confidence 13789999999999999999999999999997 999986431111 1223 45899999999
Q ss_pred HHHHHHHHHHHHhc
Q 003942 356 IEIAQEMIKEVLSQ 369 (784)
Q Consensus 356 V~~Ak~lI~~~L~~ 369 (784)
|+.|+.||+++|++
T Consensus 129 v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 129 IANATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999974
No 13
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.76 E-value=1.5e-18 Score=177.85 Aligned_cols=144 Identities=27% Similarity=0.351 Sum_probs=111.9
Q ss_pred CCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecc-----hhhHHHHHHHHHHHHHh
Q 003942 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGT-----LSNIDKAEKLINAVIAE 272 (784)
Q Consensus 198 ~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~-----~e~V~kA~~~I~elI~e 272 (784)
...+++|.||.+++|.|||++|++||.|+++|||+|.|..+ ++.|+|.++ .+.|.+|+++|++++..
T Consensus 32 aP~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~--------~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg 103 (219)
T 2e3u_A 32 FKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE--------TGEVWITSTKETEDPLAVWKARDIVLAIGRG 103 (219)
T ss_dssp -CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT--------TCEEEEEECTTCCSHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC--------CCEEEEecCCCCCCHHHHHHHHHHHHHHhcc
Confidence 34577999999999999999999999999999999999743 467888875 59999999999998842
Q ss_pred hhcCCCCcccccccchhhccCCccEEEEEec-----C------CceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCC
Q 003942 273 ADAGGSPSLVARGLATAQASGAAEQVEIKVP-----N------EKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDG 341 (784)
Q Consensus 273 ~~~~g~p~~~~~g~~~~~~~~~~~~~~i~VP-----~------~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~ 341 (784)
.+......+. ........|.|. + +.+|+||||+|+|||.|++.|||+|.|.
T Consensus 104 ~~~e~g~~ll---------~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~--------- 165 (219)
T 2e3u_A 104 FSPERAFRLL---------NEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY--------- 165 (219)
T ss_dssp CCHHHHGGGG---------STTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE---------
T ss_pred CCccccceec---------cCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC---------
Confidence 2100000000 011112223332 1 3689999999999999999999999994
Q ss_pred CCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 003942 342 SKERIVRVTGDMRQIEIAQEMIKEVLSQ 369 (784)
Q Consensus 342 ~~er~V~I~Gt~~qV~~Ak~lI~~~L~~ 369 (784)
+++|+|.|+.++|+.|+++|+++|..
T Consensus 166 --~~~v~i~G~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 166 --GKTVAIIGNPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp --TTEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred --CeEEEEEeCHHHHHHHHHHHHHHHcC
Confidence 46799999999999999999999965
No 14
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.69 E-value=4.6e-17 Score=163.12 Aligned_cols=141 Identities=19% Similarity=0.264 Sum_probs=112.5
Q ss_pred EEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEe-----cchhhHHHHHHHHHHHHHhhhc
Q 003942 201 SRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEII-----GTLSNIDKAEKLINAVIAEADA 275 (784)
Q Consensus 201 t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~-----G~~e~V~kA~~~I~elI~e~~~ 275 (784)
.++|+||.+.+|.|||++|+++|.|+++++++|.|... ++.|+|. +++..|.+|+++|.+++..+..
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~--------~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~ 76 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE--------NSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPP 76 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT--------TTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcC--------CCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCH
Confidence 47999999999999999999999999999999999742 6788888 8889999999999998874321
Q ss_pred CCCCcccccccchhhccCCccEEEEEec----------CCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCce
Q 003942 276 GGSPSLVARGLATAQASGAAEQVEIKVP----------NEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKER 345 (784)
Q Consensus 276 ~g~p~~~~~g~~~~~~~~~~~~~~i~VP----------~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er 345 (784)
.....+. .+......|.|. .+.+|+||||+|+|||.|++.|||+|.|. ++
T Consensus 77 e~A~~Ll---------~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~-----------~~ 136 (191)
T 1tua_A 77 EKAFRLL---------EEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG-----------EY 136 (191)
T ss_dssp HHHGGGG---------STTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC-----------SS
T ss_pred HHhhhcc---------cCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc-----------CC
Confidence 0000000 011122334343 23689999999999999999999999994 35
Q ss_pred EEEEEcCHHHHHHHHHHHHHHHhc
Q 003942 346 IVRVTGDMRQIEIAQEMIKEVLSQ 369 (784)
Q Consensus 346 ~V~I~Gt~~qV~~Ak~lI~~~L~~ 369 (784)
+|+|.|+.+.|+.|+..|+++|..
T Consensus 137 ~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 137 EVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp EEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeChHHHHHHHHHHHHHHcC
Confidence 899999999999999999999964
No 15
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.65 E-value=1.7e-16 Score=152.88 Aligned_cols=137 Identities=18% Similarity=0.244 Sum_probs=107.3
Q ss_pred cceeeeccccccccccCCCchhhhhhhcccCceeeecccccccccceeeecCchhchhhhhhhhhHhhhcCCCCCCCCCC
Q 003942 117 QHSSVEEQASVDNQQISVKEETKEVLFSTEEAFIDVKEETKEVTVKEEETVKEEESVEPSNVVPQQVVDNSKSDDPSSTD 196 (784)
Q Consensus 117 ~~~ki~iP~~~vg~iIGk~Ge~Ik~iq~~s~a~I~I~~~~~~~s~r~~~i~G~~e~Ve~A~~lI~~ii~~~~~~~~~~~~ 196 (784)
.+.+++||.+.+|.+||++|++|+.|+++++ |++.... .+..+.+....+++.|.+|+.++. +.
T Consensus 4 ~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~~~~i~~~~~p~~v~~~~~~l~-~~------------ 67 (144)
T 2qnd_A 4 FHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDTCTFHIYGEDQDAVKKARSFLE-FA------------ 67 (144)
T ss_dssp CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTTTEEEEEESSHHHHHHHHHHHC-EE------------
T ss_pred eEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCchheeeccCCHHHHHHHHHhhh-cc------------
Confidence 4568999999999999999999999998887 5443332 233344444456788888876431 11
Q ss_pred CCCeEEEEEecCCccceeeccCcchHhhHHhhcCC-EEEEccCCCCCCCCCCC--cEEEecchhhHHHHHHHHHHHHHhh
Q 003942 197 DSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGA-KIQITRDADADPHAATR--PVEIIGTLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 197 ~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGa-kI~V~~~~~~~p~s~eR--~V~I~G~~e~V~kA~~~I~elI~e~ 273 (784)
..+|.||.+.+|++|||+|+|||.|++.||| +|.|..+.+......++ .|+|+|+.++|++|+.+|+++|.+.
T Consensus 68 ----e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~l 143 (144)
T 2qnd_A 68 ----EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNYL 143 (144)
T ss_dssp ----EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHTC
T ss_pred ----eEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 3899999999999999999999999999997 99998765432222333 4899999999999999999999863
No 16
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.57 E-value=7.8e-16 Score=157.73 Aligned_cols=147 Identities=19% Similarity=0.214 Sum_probs=114.0
Q ss_pred ccceeeeccccccccccCCCchhhhhhhcccCceeeecccccccccceeeecCchhchhhhhhhhhHhhhcCCCCCCCC-
Q 003942 116 EQHSSVEEQASVDNQQISVKEETKEVLFSTEEAFIDVKEETKEVTVKEEETVKEEESVEPSNVVPQQVVDNSKSDDPSS- 194 (784)
Q Consensus 116 ~~~~ki~iP~~~vg~iIGk~Ge~Ik~iq~~s~a~I~I~~~~~~~s~r~~~i~G~~e~Ve~A~~lI~~ii~~~~~~~~~~- 194 (784)
....++.||..+++.|||++|++|+.|+++++++|+|..++.....+....+++.+++++|+.+|..++..+.......
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g~~l 112 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSETGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERAFRL 112 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTTTCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHHGGG
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCcccccee
Confidence 4456899999999999999999999999999999999855444434444455667999999999999885332211100
Q ss_pred CCCCCeEEEEEecCC-----------ccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHH
Q 003942 195 TDDSTMSRKIEVPNN-----------KVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAE 263 (784)
Q Consensus 195 ~~~~~~t~rI~VP~~-----------~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~ 263 (784)
..+......|.|... .+|+||||+|+|||.|++.|||+|.|. ++.|+|+|+.++|+.|+
T Consensus 113 l~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~----------~~~v~i~G~~~~i~~A~ 182 (219)
T 2e3u_A 113 LNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY----------GKTVAIIGNPIQIEIAK 182 (219)
T ss_dssp GSTTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE----------TTEEEEEECHHHHHHHH
T ss_pred ccCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC----------CeEEEEEeCHHHHHHHH
Confidence 012223334444422 689999999999999999999999997 25799999999999999
Q ss_pred HHHHHHHHh
Q 003942 264 KLINAVIAE 272 (784)
Q Consensus 264 ~~I~elI~e 272 (784)
++|+++|..
T Consensus 183 ~~i~~li~g 191 (219)
T 2e3u_A 183 TAIEKLARG 191 (219)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHcC
Confidence 999999965
No 17
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.50 E-value=1.9e-14 Score=131.70 Aligned_cols=76 Identities=28% Similarity=0.568 Sum_probs=66.8
Q ss_pred cEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccC
Q 003942 296 EQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTVR 372 (784)
Q Consensus 296 ~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~~~r 372 (784)
.+++|+||.++||+||||+|++||+|+++|||+|+|.++..+ ..+..+|+|+|+|+.++|++|++||+++|++...
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~~ 82 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPLC 82 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCCC
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcccc
Confidence 378999999999999999999999999999999999875432 2345789999999999999999999999987543
No 18
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.49 E-value=3.5e-14 Score=123.72 Aligned_cols=73 Identities=36% Similarity=0.568 Sum_probs=65.0
Q ss_pred CccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Q 003942 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 370 (784)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~~ 370 (784)
...+++|.||.+++|+||||+|++||+|+++|||+|+|.+. .+.+.+|+|+|+|+.++|++|+.||.++|++.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~----~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP----VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC----CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC----CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 45788999999999999999999999999999999999753 24567999999999999999999999999765
No 19
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.49 E-value=5.5e-14 Score=122.45 Aligned_cols=72 Identities=33% Similarity=0.597 Sum_probs=65.0
Q ss_pred CccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 003942 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 369 (784)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~ 369 (784)
...+++|.||.+++|+||||+|++||+|+++|||+|+|.+. ...+.+|+|+|+|+.++|++|+.||+++|++
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP----LEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT----TSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC----CCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999999999999753 2346789999999999999999999999975
No 20
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=3.1e-14 Score=130.03 Aligned_cols=73 Identities=32% Similarity=0.563 Sum_probs=64.7
Q ss_pred cEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccC
Q 003942 296 EQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTVR 372 (784)
Q Consensus 296 ~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~~~r 372 (784)
.+++|+||.+++++||||+|++||+|+++|||+|+|.++. ..+.+|+|+|+|+.++|++|++||+++|++...
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~----~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~~ 83 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD----GTGPEKIAHIMGPPDRCEHAARIINDLLQSLRS 83 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC----SSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC----CCCceeEEEEEeCHHHHHHHHHHHHHHHhcccc
Confidence 4789999999999999999999999999999999997542 345689999999999999999999999987543
No 21
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.47 E-value=6e-14 Score=120.25 Aligned_cols=73 Identities=36% Similarity=0.515 Sum_probs=64.0
Q ss_pred cEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 003942 296 EQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 369 (784)
Q Consensus 296 ~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~ 369 (784)
++++|.||.+++|+||||+|++||+|+++|||+|+|.++.. ....+.+|.|+|+|+.++|++|+.||.++|++
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~-~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGE-FLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTC-CSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCC-CCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999999986421 12356789999999999999999999999864
No 22
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.47 E-value=4.3e-14 Score=120.52 Aligned_cols=69 Identities=32% Similarity=0.507 Sum_probs=63.8
Q ss_pred ccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 003942 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 369 (784)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~ 369 (784)
...++|+||.+++|+||||+|++||+|+++|||+|+|.++ ...+|+|+|+|+.++|++|+.||.++|++
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999754 35699999999999999999999999976
No 23
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.47 E-value=4.3e-14 Score=121.30 Aligned_cols=71 Identities=37% Similarity=0.598 Sum_probs=64.8
Q ss_pred ccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 003942 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 369 (784)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~ 369 (784)
..+++|.||.+++|+||||+|++||+|+++|||+|+|.+. ...+.+|+|+|+|+.++|++|+.||.++|++
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP----VEGSTDRQVTITGSAASISLAQYLINVRLSS 74 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC----CTTCSEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC----CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999999999999999752 3456899999999999999999999999975
No 24
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.47 E-value=3.5e-14 Score=121.68 Aligned_cols=73 Identities=32% Similarity=0.461 Sum_probs=67.1
Q ss_pred eEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHh
Q 003942 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAE 272 (784)
Q Consensus 200 ~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e 272 (784)
++++|+||.+++|+||||+|++||+|+++|||+|+|.++.+..+++.+|.|+|+|+.++|.+|+.+|+++|.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 6889999999999999999999999999999999999875556677889999999999999999999999875
No 25
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.47 E-value=6e-14 Score=124.92 Aligned_cols=74 Identities=35% Similarity=0.618 Sum_probs=66.7
Q ss_pred CccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Q 003942 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTV 371 (784)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~~~ 371 (784)
...+++|.||.+++|+||||+|++||+|+++|||+|+|.++. +...+|+|+|+|+.++|++|+.||+++|++..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~----~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS----GGLPERSCMLTGTPESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC----TTCSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC----CCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 457899999999999999999999999999999999997643 34578999999999999999999999998654
No 26
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.46 E-value=1.3e-13 Score=120.89 Aligned_cols=73 Identities=37% Similarity=0.640 Sum_probs=65.2
Q ss_pred ccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 003942 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 369 (784)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~ 369 (784)
....+|.||.+++|+||||+|++||+|+++|||+|.|..+.. ...+.+|.|+|+|++++|++|++||+++|.+
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~--~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS--QNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSC--SSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCC--CCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 467899999999999999999999999999999999987542 2356799999999999999999999999864
No 27
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.46 E-value=1.9e-14 Score=144.25 Aligned_cols=145 Identities=16% Similarity=0.179 Sum_probs=116.9
Q ss_pred ceeeeccccccccccCCCchhhhhhhcccCceeeecccccccccceeeecCchhchhhhhhhhhHhhhcCCCCCCCCC-C
Q 003942 118 HSSVEEQASVDNQQISVKEETKEVLFSTEEAFIDVKEETKEVTVKEEETVKEEESVEPSNVVPQQVVDNSKSDDPSST-D 196 (784)
Q Consensus 118 ~~ki~iP~~~vg~iIGk~Ge~Ik~iq~~s~a~I~I~~~~~~~s~r~~~i~G~~e~Ve~A~~lI~~ii~~~~~~~~~~~-~ 196 (784)
..++.||...++.|||+.|++++.|++.+++++++...+.....+.+..+++..++.+|+.+|..+...+........ .
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~~e~A~~Ll~ 84 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFPPEKAFRLLE 84 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETTTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCCHHHHGGGGS
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCCHHHhhhccc
Confidence 458999999999999999999999999899999997665544445555669999999999999998876654332221 1
Q ss_pred CCCeEEEEEecC----------CccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHH
Q 003942 197 DSTMSRKIEVPN----------NKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLI 266 (784)
Q Consensus 197 ~~~~t~rI~VP~----------~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I 266 (784)
+..+...|.|.. ..+|+||||+|.|||.|++.|||+|.|.. +.|+|.|+.++|+.|+..|
T Consensus 85 Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~----------~~v~i~G~~~~i~~Ar~~i 154 (191)
T 1tua_A 85 EDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE----------YEVAIIGDYERAMAAKQAI 154 (191)
T ss_dssp TTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS----------SEEEEEEEHHHHHHHHHHH
T ss_pred CcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC----------CEEEEEeChHHHHHHHHHH
Confidence 223444454552 24899999999999999999999999973 4899999999999999999
Q ss_pred HHHHHh
Q 003942 267 NAVIAE 272 (784)
Q Consensus 267 ~elI~e 272 (784)
+++|..
T Consensus 155 ~~li~g 160 (191)
T 1tua_A 155 EMLAEG 160 (191)
T ss_dssp HHHHTT
T ss_pred HHHHcC
Confidence 999964
No 28
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.44 E-value=6.6e-14 Score=125.14 Aligned_cols=76 Identities=36% Similarity=0.620 Sum_probs=67.1
Q ss_pred CccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Q 003942 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTV 371 (784)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~~~ 371 (784)
...+++|+||.+++|+||||+|++||+|+++|||+|.|.++.. .....+|+|+|+|+.++|++|++||+++|++..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~--~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGP--QNTGADKPLRITGDPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCC--CSSCSCEEEEEEECTTTHHHHHHHHHHHHCCCS
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCC--CCCCCceEEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 5678899999999999999999999999999999999986542 124578999999999999999999999997643
No 29
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.44 E-value=6.6e-14 Score=119.35 Aligned_cols=71 Identities=27% Similarity=0.469 Sum_probs=65.2
Q ss_pred CCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhh
Q 003942 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 198 ~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~ 273 (784)
..++++|+||.+++|.||||+|++||+|+++|||+|+|.++ ++.+|+|+|+|+.++|.+|+.+|+++|+|+
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-----NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-----CCSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-----CCCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 35899999999999999999999999999999999999864 356899999999999999999999999863
No 30
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.44 E-value=7.7e-14 Score=123.44 Aligned_cols=73 Identities=33% Similarity=0.581 Sum_probs=65.6
Q ss_pred CccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Q 003942 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 370 (784)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~~ 370 (784)
...+++|.||.+++|+||||+|++||+|+++|||+|+|.+. ...+.+|+|+|+|+.++|++|++||+++|++.
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~----~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP----LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC----CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC----CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 45788999999999999999999999999999999999753 23467899999999999999999999999753
No 31
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=5.9e-14 Score=122.59 Aligned_cols=68 Identities=31% Similarity=0.493 Sum_probs=61.9
Q ss_pred CccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Q 003942 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLS 368 (784)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~ 368 (784)
...+++|.||.+++|+||||+|++||+|+++|||+|+|.... ++++|+|+|+.++|++|++||+++|+
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~-------~~~~v~ItG~~e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD-------KEPVFAVTGMPENVDRAREEIEAHIT 75 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS-------SCCEEEEEECTTTHHHHHHHHHHHHH
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC-------CCCeEEEEcCHHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999996422 36899999999999999999999876
No 32
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.42 E-value=1.3e-13 Score=121.35 Aligned_cols=74 Identities=36% Similarity=0.514 Sum_probs=65.1
Q ss_pred cEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Q 003942 296 EQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 370 (784)
Q Consensus 296 ~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~~ 370 (784)
.+++|.||.+++|+||||+|++||+|+++|||+|.|.++.. ....+.+|.|+|+|+.++|++|+.||.++|++.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGE-FLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTC-BSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCC-CCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 57899999999999999999999999999999999986421 123457899999999999999999999999764
No 33
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.42 E-value=2.7e-13 Score=118.05 Aligned_cols=74 Identities=26% Similarity=0.482 Sum_probs=67.5
Q ss_pred CCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhh
Q 003942 197 DSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 197 ~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~ 273 (784)
...++++|+||.+++|+||||+|++||+|+++|||+|+|.+. .+++.+|.|+|+|+.++|++|+++|+++|++.
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT---TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC---CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999999999999999999853 34567899999999999999999999999986
No 34
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.42 E-value=9.9e-14 Score=122.15 Aligned_cols=75 Identities=32% Similarity=0.460 Sum_probs=69.1
Q ss_pred eEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhh
Q 003942 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (784)
Q Consensus 200 ~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~ 274 (784)
++++|+||.+++|+||||+|++||+|+++|||+|+|.++.+..+++.+|.|+|+|+.++|.+|+.+|+++|.+..
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Confidence 588999999999999999999999999999999999986555567788999999999999999999999998863
No 35
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.41 E-value=1.5e-13 Score=125.84 Aligned_cols=74 Identities=24% Similarity=0.464 Sum_probs=66.4
Q ss_pred EEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhh
Q 003942 201 SRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (784)
Q Consensus 201 t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~ 274 (784)
+++|+||.++||+||||+|++||+|+++|||+|+|.++.+......+|+|+|+|+.++|++|+++|+++|.+..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 78999999999999999999999999999999999976433334568999999999999999999999998753
No 36
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.41 E-value=2.6e-13 Score=123.52 Aligned_cols=75 Identities=33% Similarity=0.564 Sum_probs=65.3
Q ss_pred CccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Q 003942 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 370 (784)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~~ 370 (784)
...+++|.||.+++|+||||+|++||+|+++|||+|+|.+.. ......+|+|+|+|+.++|++|++||+++|.+.
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~--~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKES--EGTLLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSS--CCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCC--CCCCCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 346789999999999999999999999999999999997643 122346899999999999999999999999653
No 37
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.40 E-value=1.6e-13 Score=117.71 Aligned_cols=73 Identities=32% Similarity=0.527 Sum_probs=66.9
Q ss_pred CCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhh
Q 003942 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 198 ~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~ 273 (784)
..++++|+||.+++|+||||+|++||+|+++|||+|+|.+. .+++.+|.|+|+|+.++|++|+.+|+++|.++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP---VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC---CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 45789999999999999999999999999999999999863 45677999999999999999999999999764
No 38
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.39 E-value=5.7e-13 Score=116.80 Aligned_cols=76 Identities=28% Similarity=0.554 Sum_probs=67.2
Q ss_pred CCCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHh
Q 003942 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAE 272 (784)
Q Consensus 196 ~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e 272 (784)
.....+++|+||.+++|+||||+|++||+|+++|||+|.|.++.. ...+.+|.|+|+|+.++|++|+++|+++++|
T Consensus 10 g~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~-~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 10 GQNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS-QNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SCSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSC-SSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCC-CCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 345678999999999999999999999999999999999997532 2356789999999999999999999999864
No 39
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.39 E-value=2.8e-13 Score=120.55 Aligned_cols=74 Identities=31% Similarity=0.585 Sum_probs=67.7
Q ss_pred CCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhh
Q 003942 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (784)
Q Consensus 198 ~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~ 274 (784)
..++++|+||.+++|+||||+|++||+|+++|||+|+|.++. .+..+|.|+|+|+.++|++|+++|+++|++..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~---~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS---GGLPERSCMLTGTPESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC---TTCSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC---CCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 458999999999999999999999999999999999999753 35568999999999999999999999999864
No 40
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.38 E-value=2.9e-13 Score=117.88 Aligned_cols=73 Identities=33% Similarity=0.538 Sum_probs=65.6
Q ss_pred CCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhh
Q 003942 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 198 ~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~ 273 (784)
..++++|+||.+++|+||||+|++||+|+++|||+|+|.+. .+++.+|.|+|+|+.++|++|+.+|+++|.++
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~---~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP---VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC---CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC---CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 45789999999999999999999999999999999999864 34667999999999999999999999999875
No 41
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.38 E-value=3.8e-13 Score=120.24 Aligned_cols=78 Identities=27% Similarity=0.535 Sum_probs=69.0
Q ss_pred CCCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhh
Q 003942 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (784)
Q Consensus 196 ~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~ 274 (784)
....++++|+||.+++|+||||+|++||+|+++|||+|+|.++... ....+|+|+|+|+.++|++|+++|+++|++..
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~-~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~ 88 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ-NTGADKPLRITGDPYKVQQAKEMVLELIRDQG 88 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC-SSCSCEEEEEEECTTTHHHHHHHHHHHHCCCS
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCC-CCCCceEEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 3567899999999999999999999999999999999999976432 23468999999999999999999999998754
No 42
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.37 E-value=3e-13 Score=119.63 Aligned_cols=74 Identities=26% Similarity=0.482 Sum_probs=67.8
Q ss_pred CCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhh
Q 003942 197 DSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 197 ~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~ 273 (784)
...++++|+||.+++|+||||+|++||+|+++|||+|+|.+. .+++.+|.|+|+|+.++|++|+++|+++|++.
T Consensus 11 ~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~---~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 11 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP---LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC---CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC---CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 456899999999999999999999999999999999999853 34667899999999999999999999999985
No 43
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=4.7e-13 Score=122.20 Aligned_cols=74 Identities=27% Similarity=0.555 Sum_probs=65.7
Q ss_pred eEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhhcC
Q 003942 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAG 276 (784)
Q Consensus 200 ~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~~~ 276 (784)
.+++|+||.+++++||||+|++||+|+++|+|+|+|.++. ..+.+|+|+|+|+.++|++|+++|+++|.+...+
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~---~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~~g 84 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD---GTGPEKIAHIMGPPDRCEHAARIINDLLQSLRSG 84 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC---SSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC--
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC---CCCceeEEEEEeCHHHHHHHHHHHHHHHhccccC
Confidence 4789999999999999999999999999999999998653 2456899999999999999999999999987643
No 44
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.35 E-value=7e-13 Score=144.98 Aligned_cols=143 Identities=14% Similarity=0.236 Sum_probs=101.6
Q ss_pred CCCCeEEEEEecCCccceeeccCc--chHhhHHhhcCCEEEEccCC--CCCCCCCCCcEEEecchhhHHHHHHHHHHHHH
Q 003942 196 DDSTMSRKIEVPNNKVGVLIGKAG--DTIRYLQYNSGAKIQITRDA--DADPHAATRPVEIIGTLSNIDKAEKLINAVIA 271 (784)
Q Consensus 196 ~~~~~t~rI~VP~~~vG~IIGkgG--~tIK~Iq~~TGakI~V~~~~--~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~ 271 (784)
....++++|.||..+++.||||+| ++|++|+++|+|+|+|...+ ...+......|+|+|..++|++|+++|++++.
T Consensus 26 ~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~P 105 (376)
T 3n89_A 26 NPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNCH 105 (376)
T ss_dssp CTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSCE
T ss_pred cCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcCC
Confidence 356799999999999999999999 99999999999999998654 22223456789999999999999999998432
Q ss_pred hhhcCCCCcccccccchhhccCCccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEc
Q 003942 272 EADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTG 351 (784)
Q Consensus 272 e~~~~g~p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~G 351 (784)
.++.+.++...+.. .+...+|.+ ++..+++|.|.... .........|+|+|
T Consensus 106 ------------------------l~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~--~~~~~~sd~V~IrG 156 (376)
T 3n89_A 106 ------------------------FTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAP--EKNGIVTTYLRITA 156 (376)
T ss_dssp ------------------------EEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-------CEEEEEEEE
T ss_pred ------------------------ceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCcc--cccCCCCCEEEEEc
Confidence 24556666543332 112345554 56789999885421 11112367899999
Q ss_pred CHHHHHHHHHHHHHHH
Q 003942 352 DMRQIEIAQEMIKEVL 367 (784)
Q Consensus 352 t~~qV~~Ak~lI~~~L 367 (784)
....|+.|++.+..+|
T Consensus 157 ~~~nv~~akeA~~~Ll 172 (376)
T 3n89_A 157 REKNQHELIEAAKRLN 172 (376)
T ss_dssp EGGGHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHH
Confidence 9876666655555444
No 45
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=4.9e-13 Score=116.77 Aligned_cols=71 Identities=24% Similarity=0.361 Sum_probs=64.0
Q ss_pred CCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhh
Q 003942 197 DSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 197 ~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~ 273 (784)
...++++|.||.+++|+||||+|++||+|+++|||+|+|.+.. .+++|+|+|+.++|++|+.+|++++...
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~------~~~~v~ItG~~e~v~~A~~~I~~~i~~r 77 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD------KEPVFAVTGMPENVDRAREEIEAHITLR 77 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS------SCCEEEEEECTTTHHHHHHHHHHHHHSC
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC------CCCeEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 4568999999999999999999999999999999999998642 2689999999999999999999987754
No 46
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.34 E-value=1.7e-12 Score=118.11 Aligned_cols=78 Identities=29% Similarity=0.536 Sum_probs=67.8
Q ss_pred CCCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhh
Q 003942 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (784)
Q Consensus 196 ~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~ 274 (784)
....++++|+||.+++|+||||+|++||+|+++|||+|+|.+..+.. ...+|.|+|+|+.++|++|+++|+++|.+..
T Consensus 11 ~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~-~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 11 ENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT-LLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp SSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS-SSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC-CCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 34568899999999999999999999999999999999998753221 2358999999999999999999999998753
No 47
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.32 E-value=1.6e-12 Score=110.10 Aligned_cols=68 Identities=21% Similarity=0.434 Sum_probs=61.1
Q ss_pred CccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q 003942 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVL 367 (784)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L 367 (784)
...+.+|.||.+++|.|||++|++||+|+++|||+|.|.++. ..+|.|+|+|+.+.|++|+++|++++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 346789999999999999999999999999999999996532 36789999999999999999999875
No 48
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=2.1e-12 Score=115.36 Aligned_cols=75 Identities=19% Similarity=0.403 Sum_probs=65.5
Q ss_pred CCccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccC
Q 003942 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTVR 372 (784)
Q Consensus 293 ~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~~~r 372 (784)
....+.+|.||.+++|+||||+|++||+|+++|||+|.|.+.. ..++.|+|+|+.++|++|+.+|++++++..+
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD------DPSNQIKITGTKEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT------SSCCEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC------CCCCeEEEEECHHHHHHHHHHHHHHhhcccc
Confidence 3457889999999999999999999999999999999996422 2468999999999999999999999987654
Q ss_pred C
Q 003942 373 P 373 (784)
Q Consensus 373 ~ 373 (784)
.
T Consensus 88 ~ 88 (94)
T 2cte_A 88 R 88 (94)
T ss_dssp C
T ss_pred c
Confidence 4
No 49
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=3.6e-12 Score=114.57 Aligned_cols=75 Identities=19% Similarity=0.272 Sum_probs=65.4
Q ss_pred CccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Q 003942 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTV 371 (784)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~~~ 371 (784)
...+++|.||.+++++||||+|++||+|+++|||+|.|.++.. ....+|.|+|+|+.++|++|+.+|+.++.+..
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~---~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~e 89 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD---GNQPQDQITITGYEKNTEAARDAILRIVGELE 89 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT---CSSCSSEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC---CCCCccEEEEEeCHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999999999999999976431 22367999999999999999999999987643
No 50
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=3.5e-12 Score=114.19 Aligned_cols=75 Identities=17% Similarity=0.203 Sum_probs=66.0
Q ss_pred CCccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcccC
Q 003942 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTVR 372 (784)
Q Consensus 293 ~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~~~r 372 (784)
....+.+|.||.+++++|||++|++||+|+++|||+|+|.++. ...+|+|+|+|+.++|++|+++|++++++...
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g-----~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG-----APDPNCVTVTGLPENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT-----CSCTTEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC-----CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999996532 23578999999999999999999999987544
No 51
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=1.9e-12 Score=117.32 Aligned_cols=90 Identities=13% Similarity=0.217 Sum_probs=80.0
Q ss_pred eecCchhchhhhhhhhhHhhhcCCCCCCCCCCCCCeEEEEEecCCccceeeccCcchHhhHHhh-cCCEEEEccCCCCCC
Q 003942 165 ETVKEEESVEPSNVVPQQVVDNSKSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYN-SGAKIQITRDADADP 243 (784)
Q Consensus 165 ~i~G~~e~Ve~A~~lI~~ii~~~~~~~~~~~~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~-TGakI~V~~~~~~~p 243 (784)
.|+|..++|++|+.+|.+++.. .++.+|.||..+++.|||++|++||+|+++ ++++|.|.++
T Consensus 4 ~i~G~~~~V~~A~~~i~~~~~~------------~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~----- 66 (102)
T 2ctf_A 4 GSSGEPEKLGQALTEVYAKANS------------FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEG----- 66 (102)
T ss_dssp CCCCCCCCCCCSCCCCCCCCCC------------CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSS-----
T ss_pred ccCcCHHHHHHHHHHHHHHhcC------------eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCC-----
Confidence 4689999999999999877731 278999999999999999999999999997 5899999852
Q ss_pred CCCCCcEEEecchhhHHHHHHHHHHHHHhhh
Q 003942 244 HAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (784)
Q Consensus 244 ~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~ 274 (784)
++.|+|.|.++.|++|+.+|..++++..
T Consensus 67 ---~~~ItI~G~~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 67 ---EDKITLEGPTEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp ---SCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999999998864
No 52
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.27 E-value=6.1e-12 Score=113.05 Aligned_cols=75 Identities=19% Similarity=0.308 Sum_probs=67.1
Q ss_pred CCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhh
Q 003942 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (784)
Q Consensus 198 ~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~ 274 (784)
..++++|.||..++++||||+|++||+|+++|||+|+|.++.+ +...+|.|+|+|+.++|.+|+.+|+.++.+..
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~--~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~e 89 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD--GNQPQDQITITGYEKNTEAARDAILRIVGELE 89 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT--CSSCSSEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC--CCCCccEEEEEeCHHHHHHHHHHHHHHHHHHH
Confidence 3479999999999999999999999999999999999987542 34467999999999999999999999998764
No 53
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.25 E-value=2.1e-12 Score=117.55 Aligned_cols=84 Identities=20% Similarity=0.275 Sum_probs=71.5
Q ss_pred chhhhhhhhhHhhhcCCCCCCCCCCCCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEE
Q 003942 172 SVEPSNVVPQQVVDNSKSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVE 251 (784)
Q Consensus 172 ~Ve~A~~lI~~ii~~~~~~~~~~~~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~ 251 (784)
+|++|+..|.+++ .++.+|.||.+++|+|||++|++||+|+++|||+|+|.++.+ ..+.|+
T Consensus 3 ~~~~Ak~~i~~~a--------------p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~-----~~~~V~ 63 (104)
T 2ctk_A 3 SGSSGKEALEALV--------------PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPEL-----QSDIIA 63 (104)
T ss_dssp CCCCCCCCCCCSS--------------CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTT-----TCCEEE
T ss_pred hHHHHHHHHHhhC--------------CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCC-----CcceEE
Confidence 4556666665544 378999999999999999999999999999999999986532 346999
Q ss_pred EecchhhHHHHHHHHHHHHHhhh
Q 003942 252 IIGTLSNIDKAEKLINAVIAEAD 274 (784)
Q Consensus 252 I~G~~e~V~kA~~~I~elI~e~~ 274 (784)
|+|+.++|++|+.+|++++++..
T Consensus 64 I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 64 ITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999998753
No 54
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.24 E-value=1.1e-11 Score=110.79 Aligned_cols=74 Identities=28% Similarity=0.484 Sum_probs=65.9
Q ss_pred CCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhhc
Q 003942 197 DSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADA 275 (784)
Q Consensus 197 ~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~~ 275 (784)
...++++|.||.+++|+|||++|++||+|+++|||+|+|.+.. ..++.|+|+|+.++|++|+.+|++++.+...
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-----~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-----DPSNQIKITGTKEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-----SSCCEEEEEECHHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-----CCCCeEEEEECHHHHHHHHHHHHHHhhcccc
Confidence 3458999999999999999999999999999999999998542 2357999999999999999999999988643
No 55
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.23 E-value=5.7e-12 Score=106.75 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=61.6
Q ss_pred CCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHH
Q 003942 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVI 270 (784)
Q Consensus 198 ~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI 270 (784)
..++.+|.||.+++|.|||++|++||+|+++|||+|+|.++. ..+|.|+|+|+.++|++|+++|++++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-----~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-----EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-----SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-----CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 357899999999999999999999999999999999998653 25689999999999999999999864
No 56
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.22 E-value=2e-11 Score=109.29 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=66.5
Q ss_pred CCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhh
Q 003942 197 DSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (784)
Q Consensus 197 ~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~ 274 (784)
...++++|.||..++++|||++|++||+|+++|+|+|+|.++.+ ..+|.|+|+|..++|++|+++|++++++..
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~----~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~ 87 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA----PDPNCVTVTGLPENVEEAIDHILNLEEEYL 87 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC----SCTTEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC----CCCcEEEEEcCHHHHHHHHHHHHHHHHHHH
Confidence 44689999999999999999999999999999999999986532 346899999999999999999999998864
No 57
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.22 E-value=5.1e-13 Score=121.15 Aligned_cols=90 Identities=17% Similarity=0.283 Sum_probs=76.3
Q ss_pred EEecchhhHHHHHHHHHHHHHhhhcCCCCcccccccchhhccCCccEEEEEecCCceeeeecCCchHHHHHHHH-hCCeE
Q 003942 251 EIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTR-SGARI 329 (784)
Q Consensus 251 ~I~G~~e~V~kA~~~I~elI~e~~~~g~p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~-SGarI 329 (784)
.|+|+.++|.+|+++|.+++.+ ..+.+|.||..++++|||++|++||+|+++ ++|+|
T Consensus 4 ~i~G~~~~V~~A~~~i~~~~~~----------------------~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I 61 (102)
T 2ctf_A 4 GSSGEPEKLGQALTEVYAKANS----------------------FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHI 61 (102)
T ss_dssp CCCCCCCCCCCSCCCCCCCCCC----------------------CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEE
T ss_pred ccCcCHHHHHHHHHHHHHHhcC----------------------eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEE
Confidence 4678888888888887765432 267899999999999999999999999997 59999
Q ss_pred EeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccc
Q 003942 330 QLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQTV 371 (784)
Q Consensus 330 qI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~~~ 371 (784)
.|.+ .++.|+|+|+.+.|++|+.+|+.++++..
T Consensus 62 ~fp~---------~~~~ItI~G~~~~V~~a~~~I~~~v~el~ 94 (102)
T 2ctf_A 62 EFTE---------GEDKITLEGPTEDVSVAQEQIEGMVKDLI 94 (102)
T ss_dssp EECS---------SSCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred EeCC---------CCCEEEEECCHHHHHHHHHHHHHHHHHHH
Confidence 9853 36799999999999999999999987644
No 58
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.20 E-value=1.4e-11 Score=112.12 Aligned_cols=69 Identities=19% Similarity=0.325 Sum_probs=61.9
Q ss_pred ccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 003942 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 369 (784)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~ 369 (784)
....+|.||.+++|+|||++|++||+|+++|||+|.|.++. ...+.|+|+|+.++|++|+.+|++++++
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE------LQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT------TTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC------CCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999999996532 2356999999999999999999998876
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.13 E-value=7e-11 Score=105.71 Aligned_cols=75 Identities=20% Similarity=0.362 Sum_probs=66.2
Q ss_pred cCCccEEEEEecCCceeeeecCCchHHHHHHHHh-CCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Q 003942 292 SGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRS-GARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQT 370 (784)
Q Consensus 292 ~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~S-GarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~~ 370 (784)
.....+..|.||.++++.|||++|++||+|+++| ||+|.|.++ .+..+.|+|+|+.++|++|+++|++++++.
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~ 86 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE------GSGSDTVVIRGPSSDVEKAKKQLLHLAEEK 86 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT------TTTCCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC------CCCcceEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 4567889999999999999999999999999999 999999643 345779999999999999999999999865
Q ss_pred cC
Q 003942 371 VR 372 (784)
Q Consensus 371 ~r 372 (784)
..
T Consensus 87 e~ 88 (95)
T 2ctj_A 87 QT 88 (95)
T ss_dssp SC
T ss_pred hh
Confidence 43
No 60
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.99 E-value=4.7e-10 Score=100.35 Aligned_cols=74 Identities=23% Similarity=0.348 Sum_probs=66.3
Q ss_pred CCCCeEEEEEecCCccceeeccCcchHhhHHhhc-CCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhh
Q 003942 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNS-GAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (784)
Q Consensus 196 ~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~T-GakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~ 274 (784)
.+..++..|.||..+++.|||++|++||+|+++| ||+|.|.++ ++..+.|+|+|..+.|++|+++|++++.+..
T Consensus 13 ~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-----g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 13 LANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-----GSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp CCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-----TTTCCEEEEESCHHHHHHHHHHHHHHHHHHS
T ss_pred HhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-----CCCcceEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 3556799999999999999999999999999999 999999865 2446799999999999999999999998864
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.96 E-value=2.4e-10 Score=100.97 Aligned_cols=75 Identities=25% Similarity=0.308 Sum_probs=64.2
Q ss_pred CCccEEEEEecCCceeeeecCCchHHHHHHHHhCCe-EEeccCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhcc
Q 003942 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGAR-IQLIPQHLPEGDGSKERIVRVTG-DMRQIEIAQEMIKEVLSQT 370 (784)
Q Consensus 293 ~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGar-IqI~~~~~p~~~~~~er~V~I~G-t~~qV~~Ak~lI~~~L~~~ 370 (784)
.......|.|+.+++|.|||++|++||+|+++|||+ |.|.. ++++|+|.| +.+++++|+.||+.+.+..
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e---------ddG~V~I~g~~~ea~~~A~~~I~~ie~~~ 82 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE---------DTGTFRIYGESADAVKKARGFLEFVEDFI 82 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET---------TTTEEEEEESSHHHHHHHHHHHSCCCCCC
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc---------CCCEEEEEECCHHHHHHHHHHHHhhheEE
Confidence 456788999999999999999999999999999998 99953 258999999 6999999999999877655
Q ss_pred cCCCCC
Q 003942 371 VRPSTL 376 (784)
Q Consensus 371 ~r~~~~ 376 (784)
..++.+
T Consensus 83 ~vp~~~ 88 (91)
T 2cpq_A 83 QVPSGP 88 (91)
T ss_dssp CCCSSC
T ss_pred ecChhh
Confidence 555543
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.83 E-value=7.7e-10 Score=97.72 Aligned_cols=66 Identities=23% Similarity=0.394 Sum_probs=58.9
Q ss_pred CCCCeEEEEEecCCccceeeccCcchHhhHHhhcCCE-EEEccCCCCCCCCCCCcEEEec-chhhHHHHHHHHHHH
Q 003942 196 DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAK-IQITRDADADPHAATRPVEIIG-TLSNIDKAEKLINAV 269 (784)
Q Consensus 196 ~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGak-I~V~~~~~~~p~s~eR~V~I~G-~~e~V~kA~~~I~el 269 (784)
....+...|.|+.+++|.|||++|++||+|+++|||+ |.|..+ +..|+|.| +.+.+++|+++|+.+
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed--------dG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED--------TGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT--------TTEEEEEESSHHHHHHHHHHHSCC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC--------CCEEEEEECCHHHHHHHHHHHHhh
Confidence 3456899999999999999999999999999999998 999742 47899999 899999999998774
No 63
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.80 E-value=7.7e-09 Score=96.01 Aligned_cols=75 Identities=13% Similarity=0.162 Sum_probs=58.0
Q ss_pred cEEEEEecC-------CceeeeecCCchHHHHHHHHhCCeEEeccCCC------CCCCCCCceEEEEEcC-HHHHHHHHH
Q 003942 296 EQVEIKVPN-------EKVGLIIGRGGETIKGLQTRSGARIQLIPQHL------PEGDGSKERIVRVTGD-MRQIEIAQE 361 (784)
Q Consensus 296 ~~~~i~VP~-------~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~------p~~~~~~er~V~I~Gt-~~qV~~Ak~ 361 (784)
.+.+|.||- +++|+|||.+|.+||+|+++|||+|.|..+.. ...+..++..|.|++. .+.|++|++
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 455665554 58999999999999999999999999974321 1112334567888876 899999999
Q ss_pred HHHHHHhcc
Q 003942 362 MIKEVLSQT 370 (784)
Q Consensus 362 lI~~~L~~~ 370 (784)
||+++|...
T Consensus 92 ~Ie~Ll~~v 100 (119)
T 2yqr_A 92 LCENLLQTV 100 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhch
Confidence 999999753
No 64
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.76 E-value=1.4e-08 Score=95.87 Aligned_cols=78 Identities=24% Similarity=0.379 Sum_probs=62.6
Q ss_pred CccEEEEEecCC------ceeeeecCCchHHHHHHHHhCCeEEeccCCCC------------CCCCCCceEEEEEcC-HH
Q 003942 294 AAEQVEIKVPNE------KVGLIIGRGGETIKGLQTRSGARIQLIPQHLP------------EGDGSKERIVRVTGD-MR 354 (784)
Q Consensus 294 ~~~~~~i~VP~~------~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p------------~~~~~~er~V~I~Gt-~~ 354 (784)
...+.+|.||-+ ++|+|||.+|.+||+|+++|||+|.|.....- ..+...+-.|.|+++ .+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 346778889876 99999999999999999999999999753210 012234678999996 88
Q ss_pred HHHHHHHHHHHHHhccc
Q 003942 355 QIEIAQEMIKEVLSQTV 371 (784)
Q Consensus 355 qV~~Ak~lI~~~L~~~~ 371 (784)
.|++|+++|+++|...+
T Consensus 85 ~~~~A~~~I~~ll~~~~ 101 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQGI 101 (131)
T ss_dssp HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHhccC
Confidence 99999999999997643
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.74 E-value=1.1e-08 Score=96.74 Aligned_cols=76 Identities=25% Similarity=0.443 Sum_probs=62.6
Q ss_pred CCeEEEEEecCC------ccceeeccCcchHhhHHhhcCCEEEEccCCCCC-------------CCCCCCcEEEec-chh
Q 003942 198 STMSRKIEVPNN------KVGVLIGKAGDTIRYLQYNSGAKIQITRDADAD-------------PHAATRPVEIIG-TLS 257 (784)
Q Consensus 198 ~~~t~rI~VP~~------~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~-------------p~s~eR~V~I~G-~~e 257 (784)
..++.+|.||.+ ++|+|||.+|.|||+|+++|||+|.|....... ....+..|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 457899999988 899999999999999999999999998742110 012255788888 789
Q ss_pred hHHHHHHHHHHHHHhh
Q 003942 258 NIDKAEKLINAVIAEA 273 (784)
Q Consensus 258 ~V~kA~~~I~elI~e~ 273 (784)
.|++|+++|+++|.+.
T Consensus 85 ~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999999763
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=1.8e-08 Score=93.46 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=60.4
Q ss_pred CCeEEEEEecCC-------ccceeeccCcchHhhHHhhcCCEEEEccCCCCC-------CCCCCCcEEEec-chhhHHHH
Q 003942 198 STMSRKIEVPNN-------KVGVLIGKAGDTIRYLQYNSGAKIQITRDADAD-------PHAATRPVEIIG-TLSNIDKA 262 (784)
Q Consensus 198 ~~~t~rI~VP~~-------~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~-------p~s~eR~V~I~G-~~e~V~kA 262 (784)
..++.+|.||.+ ++|+|||++|.|||+|+++|||+|.|..+.... ....+..|.|++ +.+.|++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 457888988864 799999999999999999999999998542110 011234677877 89999999
Q ss_pred HHHHHHHHHhh
Q 003942 263 EKLINAVIAEA 273 (784)
Q Consensus 263 ~~~I~elI~e~ 273 (784)
+++|++||.+.
T Consensus 90 ~~~Ie~Ll~~v 100 (119)
T 2yqr_A 90 KKLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhch
Confidence 99999999875
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.41 E-value=2e-07 Score=88.66 Aligned_cols=73 Identities=26% Similarity=0.314 Sum_probs=55.7
Q ss_pred EEEEEecC------CceeeeecCCchHHHHHHHHhCCeEEeccCCCCCC--------------CCCCceEEEEEcC-H--
Q 003942 297 QVEIKVPN------EKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEG--------------DGSKERIVRVTGD-M-- 353 (784)
Q Consensus 297 ~~~i~VP~------~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~--------------~~~~er~V~I~Gt-~-- 353 (784)
+.+|.||- |++|+|||.+|.+||+|+++|||+|.|..+.+-.. ...++..|.|++. .
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~ 82 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQN 82 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCH
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchh
Confidence 45666664 67999999999999999999999999986442110 1234457889985 3
Q ss_pred ---HHHHHHHHHHHHHHhc
Q 003942 354 ---RQIEIAQEMIKEVLSQ 369 (784)
Q Consensus 354 ---~qV~~Ak~lI~~~L~~ 369 (784)
..|++|+++|+++|..
T Consensus 83 ~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 83 RAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHHHHHHHCCC
Confidence 2799999999999864
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.37 E-value=3.1e-07 Score=87.40 Aligned_cols=73 Identities=21% Similarity=0.300 Sum_probs=56.9
Q ss_pred eEEEEEecCC------ccceeeccCcchHhhHHhhcCCEEEEccCCCCC---------------CCCCCCcEEEec-chh
Q 003942 200 MSRKIEVPNN------KVGVLIGKAGDTIRYLQYNSGAKIQITRDADAD---------------PHAATRPVEIIG-TLS 257 (784)
Q Consensus 200 ~t~rI~VP~~------~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~---------------p~s~eR~V~I~G-~~e 257 (784)
++.+|.||.+ ++|+|||.+|.|||+|+++|||+|.|..+.... -.+.+..|.|++ +.+
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 5788999864 599999999999999999999999999764211 012234678888 443
Q ss_pred -----hHHHHHHHHHHHHHh
Q 003942 258 -----NIDKAEKLINAVIAE 272 (784)
Q Consensus 258 -----~V~kA~~~I~elI~e 272 (784)
.|.+|+++|+++|..
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p 101 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVP 101 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHHHHHHCCC
Confidence 789999999998864
No 69
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.25 E-value=8.6e-07 Score=103.55 Aligned_cols=63 Identities=25% Similarity=0.387 Sum_probs=55.5
Q ss_pred ccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHH
Q 003942 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGD-MRQIEIAQEMIKEVL 367 (784)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt-~~qV~~Ak~lI~~~L 367 (784)
.....|.||.++++.|||+||++||.|+++|||+|.|.+ +.+|.|.++ .+.+++|+++|+.++
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d----------~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD----------EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS----------SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC----------CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 457889999999999999999999999999999999952 568999998 789999999998876
No 70
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.04 E-value=2.5e-06 Score=99.72 Aligned_cols=66 Identities=20% Similarity=0.382 Sum_probs=56.5
Q ss_pred CCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEec-chhhHHHHHHHHHHHHH
Q 003942 197 DSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIG-TLSNIDKAEKLINAVIA 271 (784)
Q Consensus 197 ~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G-~~e~V~kA~~~I~elI~ 271 (784)
.....+.|.|+.++++.|||++|++||.|+++|||+|.|.+ +..|+|.+ +.+.+++|+++|+++++
T Consensus 564 ~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d---------~G~V~I~~~~~~~~~~A~~~I~~i~~ 630 (630)
T 3u1k_A 564 NGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD---------EETFSVFAPTPSAMHEARDFITEICK 630 (630)
T ss_dssp TCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS---------SSEEEEEESSHHHHHHHHHHTTC---
T ss_pred cCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC---------CcEEEEEeCCHHHHHHHHHHHHHHhC
Confidence 34678899999999999999999999999999999999984 35889998 57899999999988763
No 71
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.95 E-value=1.2e-05 Score=75.32 Aligned_cols=67 Identities=13% Similarity=0.176 Sum_probs=59.8
Q ss_pred EEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Q 003942 297 QVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLS 368 (784)
Q Consensus 297 ~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~ 368 (784)
-+.|.|..++++.|||++|+.|++|+..|.+.|+|+.- +.+..-.|+|.|+...=.+|+.||..+++
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~-----~s~g~tEVtIfG~~~~Q~rak~MI~sLA~ 123 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVW-----GPERRAEIWIFGPPPFRRDVDRMLTDLAH 123 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECC-----CTTSCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEecc-----CCCCcEEEEEECCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999853 33467889999999999999999998775
No 72
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.90 E-value=4.6e-06 Score=79.76 Aligned_cols=104 Identities=19% Similarity=0.285 Sum_probs=77.0
Q ss_pred eEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhhcCCCC
Q 003942 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSP 279 (784)
Q Consensus 200 ~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~~~g~p 279 (784)
-...|+|....+|..||++|++|+.|+++.|-+|.|...++ + +.++|.+.. +|
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~------d------------------~~~fI~naL---sP 88 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSS------D------------------LERIVKNLF---PG 88 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCS------S------------------HHHHHHHHS---TT
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCC------C------------------HHHHHHHhc---CC
Confidence 47789999999999999999999999999999999986542 1 223333321 12
Q ss_pred cccccccchhhccCCccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEec
Q 003942 280 SLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLI 332 (784)
Q Consensus 280 ~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~ 332 (784)
..+..-.. ...+......+.|+.+..++.|||+|.||+-..+.||.+|.|.
T Consensus 89 A~V~~V~i--~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 89 VKIESINV--RERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp SCEEEEEE--EEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred ceEEEEEE--eecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 21110000 0002446778899999999999999999999999999998875
No 73
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.77 E-value=1.1e-05 Score=95.26 Aligned_cols=68 Identities=24% Similarity=0.490 Sum_probs=12.8
Q ss_pred ccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcccC
Q 003942 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGD-MRQIEIAQEMIKEVLSQTVR 372 (784)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt-~~qV~~Ak~lI~~~L~~~~r 372 (784)
.....|.|+.++++.|||+||.+||.|+++|||+|.|.. +.+|.|.+. .+.+++|+++|+.++.+...
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d----------dG~v~I~~~~~~~~~~A~~~i~~i~~~~~v 637 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND----------DGVVKVSASDGAKIKAAIDWIKSITDEAEV 637 (726)
T ss_dssp CC-----------------------------------------------------CCSCHHHHHHHHHC----------
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC----------CceEEEEeCCHHHHHHHHHHHHHHhhhhcC
Confidence 346788999999999999999999999999999999852 467888887 88999999999998876433
No 74
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.54 E-value=3.1e-05 Score=91.55 Aligned_cols=68 Identities=28% Similarity=0.462 Sum_probs=13.3
Q ss_pred CCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEec-chhhHHHHHHHHHHHHHhhh
Q 003942 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIG-TLSNIDKAEKLINAVIAEAD 274 (784)
Q Consensus 198 ~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G-~~e~V~kA~~~I~elI~e~~ 274 (784)
......|.|+.++++.|||++|++||.|.++||++|.|..+ ..|.|.+ +.+.+++|+++|+.++.+..
T Consensus 568 ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~dd---------G~v~I~~~~~~~~~~A~~~i~~i~~~~~ 636 (726)
T 4aid_A 568 APKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD---------GVVKVSASDGAKIKAAIDWIKSITDEAE 636 (726)
T ss_dssp CCC----------------------------------------------------CCSCHHHHHHHHHC---------
T ss_pred CCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECC---------ceEEEEeCCHHHHHHHHHHHHHHhhhhc
Confidence 35578899999999999999999999999999999999743 4677777 78999999999999987653
No 75
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.37 E-value=0.00023 Score=66.61 Aligned_cols=70 Identities=13% Similarity=0.186 Sum_probs=60.5
Q ss_pred eEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhh
Q 003942 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 200 ~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~ 273 (784)
.-+.|.|...+++.|||++|+.|+.|+..|.+.|+|..-. .+..-.|+|.|+...=.+|+.+|..+..-.
T Consensus 56 dPlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~----s~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 56 DPKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG----PERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp SCEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC----TTSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC----CCCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999999999999998642 235678999999999999999999887654
No 76
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.20 E-value=1.6e-05 Score=76.11 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=73.5
Q ss_pred ccceeeeccccccccccCCCchhhhhhhcccCceeeecccccccccceeeecCchhchhhhhhhhhHhhhcCCCCCCC-C
Q 003942 116 EQHSSVEEQASVDNQQISVKEETKEVLFSTEEAFIDVKEETKEVTVKEEETVKEEESVEPSNVVPQQVVDNSKSDDPS-S 194 (784)
Q Consensus 116 ~~~~ki~iP~~~vg~iIGk~Ge~Ik~iq~~s~a~I~I~~~~~~~s~r~~~i~G~~e~Ve~A~~lI~~ii~~~~~~~~~-~ 194 (784)
.....+.+....+|..||++|.+|+.|.++.+.+|+|-.-+... +.+|...|.-.....-. .
T Consensus 35 ~dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d~-----------------~~fI~naLsPA~V~~V~i~ 97 (144)
T 2cxc_A 35 NNRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSDL-----------------ERIVKNLFPGVKIESINVR 97 (144)
T ss_dssp GTEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSSH-----------------HHHHHHHSTTSCEEEEEEE
T ss_pred CCEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCCH-----------------HHHHHHhcCCceEEEEEEe
Confidence 34557888888999999999999999997778888776655432 12222222211110000 0
Q ss_pred CCCCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEc
Q 003942 195 TDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQIT 236 (784)
Q Consensus 195 ~~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~ 236 (784)
..+......+.|+....+++|||+|.|+|-+.+-||.+|.|.
T Consensus 98 ~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 98 ERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred ecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 002346788999999999999999999999999999888775
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.91 E-value=0.00078 Score=69.77 Aligned_cols=104 Identities=26% Similarity=0.395 Sum_probs=72.2
Q ss_pred EEEEEecC-----CccceeeccCcchHhhH-HhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhh
Q 003942 201 SRKIEVPN-----NKVGVLIGKAGDTIRYL-QYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEAD 274 (784)
Q Consensus 201 t~rI~VP~-----~~vG~IIGkgG~tIK~I-q~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~ 274 (784)
..+|.|-+ +-||..||++|.+|+.| ++-.|-+|.|...++ + ...+|...|.
T Consensus 113 R~KiAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~------d--------------p~~fi~nals--- 169 (251)
T 2asb_A 113 RSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD------D--------------PARFVANALS--- 169 (251)
T ss_dssp EEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS------S--------------HHHHHHHHTT---
T ss_pred eeEEEEEcCCCCCCHHHHHhCCCchHHHHHHHHhCCCeEEEEEecC------C--------------HHHHHHhccC---
Confidence 34555544 35999999999999999 777889999986542 1 1222322222
Q ss_pred cCCCCcccccccchhhccCCccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccC
Q 003942 275 AGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQ 334 (784)
Q Consensus 275 ~~g~p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~ 334 (784)
|..+..-.. .......+.+.|+.+..++.|||+|.||+-..+.||.+|.|...
T Consensus 170 ----PA~V~~V~i---~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 170 ----PAKVVSVSV---IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp ----TSCCSEEEE---EETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred ----CcceEEEEE---EcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 211110000 01123578899999999999999999999999999999999754
No 78
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.85 E-value=0.00089 Score=72.95 Aligned_cols=105 Identities=28% Similarity=0.355 Sum_probs=74.6
Q ss_pred eEEEEEecC-----CccceeeccCcchHhhHHhhc-CCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhh
Q 003942 200 MSRKIEVPN-----NKVGVLIGKAGDTIRYLQYNS-GAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 200 ~t~rI~VP~-----~~vG~IIGkgG~tIK~Iq~~T-GakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~ 273 (784)
...+|.|-+ +-||..||++|.+|+.|.++. |-+|.|...++ + +..+|.+.
T Consensus 235 ~RaKIAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~------d------------------p~~fi~na 290 (366)
T 1k0r_A 235 HRSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD------D------------------PARFVANA 290 (366)
T ss_dssp TEEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS------S------------------HHHHHHHH
T ss_pred CeEEEEEEeCCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEEcCC------C------------------HHHHHHHh
Confidence 344666654 469999999999999999998 89999986532 1 22233332
Q ss_pred hcCCCCcccccccchhhccCCccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccC
Q 003942 274 DAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQ 334 (784)
Q Consensus 274 ~~~g~p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~ 334 (784)
. +|..+..-. ..........+.|+.+..++.|||+|.||+-..+.||++|.|..+
T Consensus 291 l---sPA~V~~V~---~~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 291 L---SPAKVVSVS---VIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp T---TTSCCSEEE---EEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred c---CCcceeEEE---EEcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 1 121111000 001234678999999999999999999999999999999999754
No 79
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=96.78 E-value=0.00042 Score=82.19 Aligned_cols=66 Identities=23% Similarity=0.425 Sum_probs=0.0
Q ss_pred ccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcc
Q 003942 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGD-MRQIEIAQEMIKEVLSQT 370 (784)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt-~~qV~~Ak~lI~~~L~~~ 370 (784)
.....|.|+.++++.|||++|.+||.|.++||++|.|.. +..|+|.+. .+.+++|+++|+.++.+.
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~----------dg~v~I~~~~~~~~~~a~~~i~~i~~~~ 625 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED----------DGTVKIAATDGEKAKHAIRRIEEITAEI 625 (723)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC----------CccEEEecCCHHHHHHHHHHHHHHhhhh
Confidence 346778999999999999999999999999999998842 567888876 678889999998877653
No 80
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.62 E-value=0.00082 Score=69.58 Aligned_cols=97 Identities=19% Similarity=0.231 Sum_probs=66.4
Q ss_pred cccccccCCCchhhhhh-hcccCceeeecccccccccceeeecCchhchhhhhhhhhHhhhcCCCCCCCCCCCCCeEEEE
Q 003942 126 SVDNQQISVKEETKEVL-FSTEEAFIDVKEETKEVTVKEEETVKEEESVEPSNVVPQQVVDNSKSDDPSSTDDSTMSRKI 204 (784)
Q Consensus 126 ~~vg~iIGk~Ge~Ik~i-q~~s~a~I~I~~~~~~~s~r~~~i~G~~e~Ve~A~~lI~~ii~~~~~~~~~~~~~~~~t~rI 204 (784)
+-+|..||++|.+|+.| ++..+.+|+|-.-+... ..+|...|.-.....-...+....+..+
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~dp-----------------~~fi~nalsPA~V~~V~i~~~~~~~a~V 188 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDP-----------------ARFVANALSPAKVVSVSVIDQTARAARV 188 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSSH-----------------HHHHHHHTTTSCCSEEEEEETTTTEEEE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCCH-----------------HHHHHhccCCcceEEEEEEcCCCcEEEE
Confidence 34568999999999998 56777777776554432 1222222221111100000112257899
Q ss_pred EecCCccceeeccCcchHhhHHhhcCCEEEEccCC
Q 003942 205 EVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDA 239 (784)
Q Consensus 205 ~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~ 239 (784)
.|+....++.|||+|.|||...+-||.+|.|....
T Consensus 189 ~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 189 VVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp EECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred EEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 99999999999999999999999999999998654
No 81
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=96.48 E-value=0.0003 Score=83.76 Aligned_cols=62 Identities=23% Similarity=0.406 Sum_probs=22.7
Q ss_pred cEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHH
Q 003942 296 EQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGD-MRQIEIAQEMIKEVL 367 (784)
Q Consensus 296 ~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt-~~qV~~Ak~lI~~~L 367 (784)
....|.||.++++.|||++|.+||.|++++|++|.|.. +..|+|+.. ...+++|+++|+.++
T Consensus 598 ~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~----------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 598 RIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED----------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp BCCCC------------------CTTCCCCCSCC------------------CCCBSSHHHHCC---------
T ss_pred eeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC----------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 34568899999999999999999999999999998842 567888887 678888888888776
No 82
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=96.37 E-value=0.00074 Score=80.10 Aligned_cols=67 Identities=27% Similarity=0.382 Sum_probs=0.0
Q ss_pred CCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEec-chhhHHHHHHHHHHHHHhh
Q 003942 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIG-TLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 198 ~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G-~~e~V~kA~~~I~elI~e~ 273 (784)
......|.|+.++++.|||++|.+||.|.++||+.|.|.. +..|.|.+ +.+.+++|+++|+.++.+.
T Consensus 558 ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~---------dg~v~I~~~~~~~~~~a~~~i~~i~~~~ 625 (723)
T 3cdi_A 558 APRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED---------DGTVKIAATDGEKAKHAIRRIEEITAEI 625 (723)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC---------CccEEEecCCHHHHHHHHHHHHHHhhhh
Confidence 3567788999999999999999999999999999998874 34667766 6778888988888877654
No 83
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.15 E-value=0.0018 Score=70.48 Aligned_cols=97 Identities=20% Similarity=0.247 Sum_probs=66.9
Q ss_pred cccccccCCCchhhhhhhccc-CceeeecccccccccceeeecCchhchhhhhhhhhHhhhcCCCCCCCCCCCCCeEEEE
Q 003942 126 SVDNQQISVKEETKEVLFSTE-EAFIDVKEETKEVTVKEEETVKEEESVEPSNVVPQQVVDNSKSDDPSSTDDSTMSRKI 204 (784)
Q Consensus 126 ~~vg~iIGk~Ge~Ik~iq~~s-~a~I~I~~~~~~~s~r~~~i~G~~e~Ve~A~~lI~~ii~~~~~~~~~~~~~~~~t~rI 204 (784)
+-+|..||++|.+|+.|..+. +.+|+|-.-+... ..+|...|.-.....-...+.......+
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~dp-----------------~~fi~nalsPA~V~~V~~~~~~~~~a~V 311 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDP-----------------ARFVANALSPAKVVSVSVIDQTARAARV 311 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSSH-----------------HHHHHHHTTTSCCSEEEEEETTTTEEEE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCCH-----------------HHHHHHhcCCcceeEEEEEcCCCcEEEE
Confidence 456799999999999998555 6677766544321 1223333322221111000112457899
Q ss_pred EecCCccceeeccCcchHhhHHhhcCCEEEEccCC
Q 003942 205 EVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDA 239 (784)
Q Consensus 205 ~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~ 239 (784)
.|+....++.|||+|.|||...+-||.+|.|....
T Consensus 312 ~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 312 VVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp EECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred EEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 99999999999999999999999999999998654
No 84
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=96.09 E-value=0.0058 Score=66.28 Aligned_cols=95 Identities=24% Similarity=0.412 Sum_probs=68.2
Q ss_pred CccceeeccCcchHhhHHhhc-CCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhhcCCCCcccccccc
Q 003942 209 NKVGVLIGKAGDTIRYLQYNS-GAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLA 287 (784)
Q Consensus 209 ~~vG~IIGkgG~tIK~Iq~~T-GakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~~~g~p~~~~~g~~ 287 (784)
+-+|..||.+|.+|+.|.++. |-+|.|..-++. ..++|.+.. +|..+..-.-
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~d------------------------~~~fi~nal---~Pa~v~~v~~ 297 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDD------------------------PKQLIANAL---APATVIEVEI 297 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSS------------------------HHHHHHHHT---CSSCCSEEEE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCCC------------------------HHHHHHHhc---CccEEEEEEE
Confidence 359999999999999999998 788888764321 222333321 1211110000
Q ss_pred hhhccCCccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEecc
Q 003942 288 TAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIP 333 (784)
Q Consensus 288 ~~~~~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~ 333 (784)
.........+.|+.+..++.|||+|.||+--.+.||.+|.|..
T Consensus 298 ---~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 298 ---LDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp ---EETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred ---EcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 0123467899999999999999999999999999999999964
No 85
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=95.57 E-value=0.0016 Score=77.70 Aligned_cols=64 Identities=23% Similarity=0.352 Sum_probs=22.8
Q ss_pred CCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEec-chhhHHHHHHHHHHHH
Q 003942 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIG-TLSNIDKAEKLINAVI 270 (784)
Q Consensus 198 ~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G-~~e~V~kA~~~I~elI 270 (784)
......|.||.++++.|||++|++||.|+++||+.|.|.. +..|+|+. +.+.+++|+++|..++
T Consensus 596 ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~---------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 596 APRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED---------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp SCBCCCC------------------CTTCCCCCSCC-----------------CCCBSSHHHHCC---------
T ss_pred CceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC---------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 3445678899999999999999999999999999999874 34677776 6677777877777765
No 86
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.35 E-value=0.017 Score=62.61 Aligned_cols=96 Identities=16% Similarity=0.164 Sum_probs=63.1
Q ss_pred cccccccCCCchhhhhhhccc-CceeeecccccccccceeeecCchhchhhhhhhhhHhhhcCCCCCCCCCCCCCeEEEE
Q 003942 126 SVDNQQISVKEETKEVLFSTE-EAFIDVKEETKEVTVKEEETVKEEESVEPSNVVPQQVVDNSKSDDPSSTDDSTMSRKI 204 (784)
Q Consensus 126 ~~vg~iIGk~Ge~Ik~iq~~s-~a~I~I~~~~~~~s~r~~~i~G~~e~Ve~A~~lI~~ii~~~~~~~~~~~~~~~~t~rI 204 (784)
+-+|..||.+|.+|+.+..+. +.+|.|-.-.... ..+|...|.-.....-...+....+..+
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s~d~-----------------~~fi~nal~Pa~v~~v~~~d~~~~~~~v 307 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWSDDP-----------------KQLIANALAPATVIEVEILDKENKAARV 307 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSSH-----------------HHHHHHHTCSSCCSEEEEEETTTTEEEE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecCCCH-----------------HHHHHHhcCccEEEEEEEEcCCCCEEEE
Confidence 345688999999999997544 5555554433221 1222222221111000000122457899
Q ss_pred EecCCccceeeccCcchHhhHHhhcCCEEEEccC
Q 003942 205 EVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRD 238 (784)
Q Consensus 205 ~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~ 238 (784)
.|+....++.|||+|.|||...+-||.+|.|...
T Consensus 308 ~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 308 LVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp EECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred EEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 9999999999999999999999999999999754
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=87.63 E-value=0.12 Score=49.58 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=55.3
Q ss_pred chhhhhhhhhHhhhcCCCCCC-CCC-CCCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCc
Q 003942 172 SVEPSNVVPQQVVDNSKSDDP-SST-DDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRP 249 (784)
Q Consensus 172 ~Ve~A~~lI~~ii~~~~~~~~-~~~-~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~ 249 (784)
.++.++..|.+++....++.. ... .....++.|.|-...+|+||||.|.|++.|+--+. +++.+.. ...-.
T Consensus 3 ~~~~~~~~L~~il~~m~~~~~~i~v~~~~~~~i~i~i~ged~glLIGK~G~TL~ALQyL~~--~~vn~~~-----~~~V~ 75 (152)
T 2pt7_G 3 KLHEIKQELKDLFSHLPYKINKVEVSLYEPGVLLIDIDGEDSALLIGEKGYRYKALSYLLF--NWIHPTY-----GYSIR 75 (152)
T ss_dssp CHHHHHHHHHHHTTTTTCCEEEEEEEEEETTEEEEEEEEGGGTTTTCGGGHHHHHHHHHHH--HHHHHHH-----SCEEE
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEEecCCEEEEEEecCCcceEECCCCcchHHHHHHHH--HHhhhcC-----CceEE
Confidence 356677788888875555321 110 11233567777888999999999999999987542 2222210 00112
Q ss_pred EEEecchhhHHHHHHHHHHHHHh
Q 003942 250 VEIIGTLSNIDKAEKLINAVIAE 272 (784)
Q Consensus 250 V~I~G~~e~V~kA~~~I~elI~e 272 (784)
|.|.+-.+.-++.++.+...|++
T Consensus 76 LDve~YRerReetL~~lA~~~A~ 98 (152)
T 2pt7_G 76 LEISTFLQNQEKVMDTQLQSVIM 98 (152)
T ss_dssp EEETTHHHHHHHHHHHHHHHHHH
T ss_pred EEhHHhHHHHHHHHHHHHHHHHH
Confidence 34445566666666555555554
No 88
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=86.91 E-value=9.8 Score=34.58 Aligned_cols=46 Identities=13% Similarity=0.057 Sum_probs=28.4
Q ss_pred hHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhh
Q 003942 221 TIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 221 tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~ 273 (784)
.|++.|+-.|+-..... .++.+|.|+|.+++|.+-+..-.+.++.+
T Consensus 23 mirqarkfagtvtytl~-------gn~l~i~itgvpeqvrkelakeaerl~~e 68 (170)
T 4hhu_A 23 MIRQARKFAGTVTYTLS-------GNRLVIVITGVPEQVRKELAKEAERLKAE 68 (170)
T ss_dssp HHHHHHHTTCEEEEEEE-------TTEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceEEEEEe-------CCEEEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 45555665554332221 22568899999999998776655555543
No 89
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=81.17 E-value=0.25 Score=50.40 Aligned_cols=59 Identities=24% Similarity=0.360 Sum_probs=41.1
Q ss_pred hhhhhhhhhHhhhcCCCCCCCCCC--CCCeEEEEEecCCccceeeccCcchHhhHHhhcCC
Q 003942 173 VEPSNVVPQQVVDNSKSDDPSSTD--DSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGA 231 (784)
Q Consensus 173 Ve~A~~lI~~ii~~~~~~~~~~~~--~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGa 231 (784)
.+.|...|.++|....++...... ...-++.|.|.....|+||||+|.+|+.|+.-+..
T Consensus 63 ~~~a~~~L~~ll~~m~~~~~i~~~~~~~~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~ 123 (225)
T 3gku_A 63 QDKAIEFLEQVFDAMNMAVDISVEYNETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSL 123 (225)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEEecCCCEEEEEEcCCccceeecCCCeEhHHHHHHHHH
Confidence 456788888888766654332211 11235566677778999999999999999886653
No 90
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=79.29 E-value=0.99 Score=46.02 Aligned_cols=64 Identities=17% Similarity=0.379 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhhhcCCCCcccccccchhhccCCccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEE
Q 003942 259 IDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQ 330 (784)
Q Consensus 259 V~kA~~~I~elI~e~~~~g~p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIq 330 (784)
.++|.+.|.++|...... ..+.- ........+.|.|-.+..|+||||.|.+++.||-.+..-|.
T Consensus 63 ~~~a~~~L~~ll~~m~~~---~~i~~-----~~~~~~~~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 63 QDKAIEFLEQVFDAMNMA---VDISV-----EYNETEKEMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp HHHHHHHHHHHHHHTTCC---CEEEE-----EEETTTTEEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC---eEEEE-----EEecCCCEEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 457888888888775321 10000 00112346777787888999999999999999988775443
No 91
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=78.01 E-value=0.92 Score=39.83 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=25.2
Q ss_pred CccEEEEEecCCceeeeecCCchHHHHHHH
Q 003942 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQT 323 (784)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~ 323 (784)
....+++.|...+-|.||||+|+.|++|+.
T Consensus 33 ~~~~i~I~I~tarPg~vIGkkG~~Ie~L~~ 62 (92)
T 1wh9_A 33 TPTRTEIIILATRTQNVLGEKGRRIRELTA 62 (92)
T ss_dssp CSSCEEEEEEESCHHHHHCGGGHHHHHHHH
T ss_pred CCCeEEEEEEeCCCceEEcCCcHHHHHHHH
Confidence 345688888888999999999999988764
No 92
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=76.81 E-value=0.87 Score=43.67 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=26.5
Q ss_pred ccEEEEEecCCceeeeecCCchHHHHHHHHh
Q 003942 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTRS 325 (784)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~S 325 (784)
..++.|.|-.+..|+||||.|.|++.||-.+
T Consensus 32 ~~~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 32 PGVLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp TTEEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred CCEEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 3467788888999999999999999998665
No 93
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=70.86 E-value=2.3 Score=43.71 Aligned_cols=31 Identities=26% Similarity=0.359 Sum_probs=26.3
Q ss_pred CccEEEEEecCCceeeeecCCchHHHHHHHH
Q 003942 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324 (784)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~ 324 (784)
....++|.|-...-|.|||++|+.|++|+..
T Consensus 45 ~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 45 TPTKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp CSSCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CCCeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 3467888899999999999999999988754
No 94
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=70.13 E-value=2.1 Score=43.57 Aligned_cols=59 Identities=19% Similarity=0.296 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHhhhcCCCCcccccccchhhccCCccEEEEEecCCceeeeecCCchHHHHHHHH
Q 003942 257 SNIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324 (784)
Q Consensus 257 e~V~kA~~~I~elI~e~~~~g~p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~ 324 (784)
++|.+|. |++.|...... -|+....-......+++.|-..+-|.|||++|+.|++|+..
T Consensus 14 dg~~~a~--Ire~l~k~l~~-------agis~IeI~R~~~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 14 DGVFYAE--LNEMLTRELAE-------DGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp HHHHHHH--HHHHHHHHTSS-------CSSCCEECCEETTEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred cCeehHH--HHHHHHHHHHh-------CCcceEEEEEcCCcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4565554 77777765421 11211111123456788899999999999999999987643
No 95
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=66.56 E-value=2.8 Score=43.01 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=25.1
Q ss_pred ccEEEEEecCCceeeeecCCchHHHHHHHH
Q 003942 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324 (784)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~ 324 (784)
...++|.|-..+-|.|||++|..|++|+..
T Consensus 43 ~~~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 43 PTKTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp SSCEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred CCeEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 456788888889999999999999987643
No 96
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=64.71 E-value=7.2 Score=39.67 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=44.3
Q ss_pred EEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHH
Q 003942 202 RKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINA 268 (784)
Q Consensus 202 ~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~e 268 (784)
+-|.|+..++.++||+++..|+.|.+.+++.|.|-. +-.|.|.++.+.+..+...|..
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~---------NG~IWi~~~~~~~~~~~~ai~~ 195 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ---------NGLIWVNGDRRKVSIAEEAIYL 195 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT---------TSEEEEESCHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC---------CcEEEEeCCchhHHHHHHHHHH
Confidence 345788889999999999999999999999999964 3478898866544444444433
No 97
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=61.73 E-value=12 Score=38.14 Aligned_cols=58 Identities=19% Similarity=0.217 Sum_probs=44.8
Q ss_pred EEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEec-chhhHHHHHHHHHH
Q 003942 202 RKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIG-TLSNIDKAEKLINA 268 (784)
Q Consensus 202 ~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G-~~e~V~kA~~~I~e 268 (784)
+-|.|...++.+++|+++..|+.|.++++++|.|-. +..|+|.+ +.+.+..+.+.|..
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~---------NG~IWi~~~~~~~~~~~~~ai~~ 208 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR---------NGRIHLECPNEDLEAIAVMAIKI 208 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET---------TTEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC---------CCEEEEecCCHHHHHHHHHHHHH
Confidence 456888899999999999999999999999999964 35788887 44455444444444
No 98
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=58.81 E-value=8.8 Score=44.91 Aligned_cols=95 Identities=23% Similarity=0.340 Sum_probs=61.9
Q ss_pred eeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhhcCCCCcccccccchhhcc
Q 003942 213 VLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQAS 292 (784)
Q Consensus 213 ~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~~~g~p~~~~~g~~~~~~~ 292 (784)
.++=.+++.||+|-++..-+|.|..+.. ....-++|+++|.+++-++.. ...+..
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------- 104 (651)
T 3af5_A 50 EAIMKDGELIKDLAKVLKKRISVRPDPE--------------VLLPPEEAEKLIFEIVPKEAE--ITNIAF--------- 104 (651)
T ss_dssp C-----CCSHHHHHHHHTSCEEEECCGG--------------GSCCHHHHHHHHHHHSCGGGC--CCEEEE---------
T ss_pred HHhhcccHHHHHHHHHhhceEEEeCChh--------------hcCCHHHHHHHHHHhCCCccC--ccceee---------
Confidence 3455778999999999999999986521 112346889999999876421 111100
Q ss_pred CCccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEecc
Q 003942 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIP 333 (784)
Q Consensus 293 ~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~ 333 (784)
...+-++.|=..+-|++|||.|+++++|..++|-+..+..
T Consensus 105 -~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~ 144 (651)
T 3af5_A 105 -DPSVGEVLIEAKKPGLVIGKNGETLRLITQKVKWAPKVVR 144 (651)
T ss_dssp -ETTTTEEEEEESSTTTTSCTTSHHHHHHHHHHCSEEEEEE
T ss_pred -cCCCceEEEEECCCCccccccchhHHHHhhccCccccccc
Confidence 0112244455555589999999999999999998877654
No 99
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=58.43 E-value=4.7 Score=42.45 Aligned_cols=37 Identities=27% Similarity=0.322 Sum_probs=27.8
Q ss_pred cEEEEEecC-CceeeeecCCchHHHHHH--------HHhCCeEEec
Q 003942 296 EQVEIKVPN-EKVGLIIGRGGETIKGLQ--------TRSGARIQLI 332 (784)
Q Consensus 296 ~~~~i~VP~-~~vG~VIGkgG~~IK~Iq--------~~SGarIqI~ 332 (784)
....|.|.. +..+.||||+|++||+|. +..|++|.+.
T Consensus 240 i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 240 IKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 344566766 578999999999999664 4578887774
No 100
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=57.91 E-value=3 Score=36.50 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=24.4
Q ss_pred eEEEEEecCCccceeeccCcchHhhHHhh
Q 003942 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYN 228 (784)
Q Consensus 200 ~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~ 228 (784)
...+|.|-..+-|.|||++|..|++|+.+
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 35678888889999999999999888754
No 101
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=56.81 E-value=15 Score=37.26 Aligned_cols=57 Identities=28% Similarity=0.426 Sum_probs=44.3
Q ss_pred EEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHH
Q 003942 298 VEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIK 364 (784)
Q Consensus 298 ~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~ 364 (784)
+-+.|...++.++||+++..|+.|.+.++|.|.|-. ...|-|.++...+..+...|.
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~----------NG~IWi~~~~~~~~~~~~ai~ 194 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ----------NGLIWVNGDRRKVSIAEEAIY 194 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT----------TSEEEEESCHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC----------CcEEEEeCCchhHHHHHHHHH
Confidence 456889999999999999999999999999999842 456778888654444444443
No 102
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=56.65 E-value=61 Score=32.68 Aligned_cols=27 Identities=30% Similarity=0.160 Sum_probs=22.5
Q ss_pred eEEEEEcC--HHHHHHHHHHHHHHHhccc
Q 003942 345 RIVRVTGD--MRQIEIAQEMIKEVLSQTV 371 (784)
Q Consensus 345 r~V~I~Gt--~~qV~~Ak~lI~~~L~~~~ 371 (784)
..|+|+|. .+.+..|.+.|..+|.+.+
T Consensus 188 GKiviTGaks~~d~~~A~~~I~p~L~~fr 216 (218)
T 3eik_A 188 GKIVLTGAKVRDDIYQAFNNIYPVLIQHR 216 (218)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHHTB
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHHHhh
Confidence 35788887 6899999999999998654
No 103
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=55.30 E-value=5.8 Score=46.39 Aligned_cols=95 Identities=21% Similarity=0.371 Sum_probs=65.0
Q ss_pred eeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhhcCCCCcccccccchhhcc
Q 003942 213 VLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQAS 292 (784)
Q Consensus 213 ~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~~~g~p~~~~~g~~~~~~~ 292 (784)
.++=.+++.||+|-++..-+|.|..+.+ ....-++|+++|.+++-++.. ...+. |
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~--~~~~~---~------ 99 (640)
T 2xr1_A 45 RKFADDGNIIRNLAKELRTRIAMRPDPR--------------VLATPEDSISIIEEVVPKESV--ISSYY---F------ 99 (640)
T ss_dssp HHHHHCTHHHHHHHHHHTSCEEEEECGG--------------GCCCHHHHHHHHHHHSCGGGC--EEEEE---E------
T ss_pred HHhccccHHHHHHHHHhhceEEEeCChh--------------hcCCHHHHHHHHHHhCCCccC--cccee---e------
Confidence 3455778999999999999999986521 112346889999999876421 00000 0
Q ss_pred CCccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEecc
Q 003942 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIP 333 (784)
Q Consensus 293 ~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~ 333 (784)
...+-++.|=.++-|++|||.|+++++|..++|-+..+..
T Consensus 100 -~~~~~~v~~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~ 139 (640)
T 2xr1_A 100 -DPDSGEVIIEAEKPGLVIGKHGATLREITKQIGWIPKVVR 139 (640)
T ss_dssp -CTTTSEEEEEESSHHHHHCSSSHHHHHHHHHHCSEEEEEE
T ss_pred -cCCCceEEEEeCCCCcccccchhhHHHHHhccCccccccc
Confidence 1122344555556689999999999999999998877654
No 104
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=54.77 E-value=92 Score=31.44 Aligned_cols=96 Identities=13% Similarity=0.133 Sum_probs=54.3
Q ss_pred CCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhhcCCCCcccccccchhhccCCccEEEEEecCCceee
Q 003942 230 GAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKVGL 309 (784)
Q Consensus 230 GakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~~~g~p~~~~~g~~~~~~~~~~~~~~i~VP~~~vG~ 309 (784)
..+|.+... ...|.|+|+.++|++++++|..+=... ......|.+-...+.-
T Consensus 139 ~g~v~~d~~--------tN~Liv~g~~~~i~~i~~li~~lD~p~--------------------~~~~~vi~l~~a~A~d 190 (246)
T 4e9j_A 139 YGHLAAVPS--------ANALIISDRSANIARIEDVIRQLDQKG--------------------SHDYSVINLRYGWVMD 190 (246)
T ss_dssp TSEEEEEGG--------GTEEEEEECHHHHHHHHHHHHHHHTCS--------------------CCCEEEEECSSSCHHH
T ss_pred CceEEEcCC--------CCEEEEEcCHHHHHHHHHHHHHhcccc--------------------ccceEEEEecCCCHHH
Confidence 466777643 357889999999988887777642111 0122233333332222
Q ss_pred eecCCchHHHHHHHH------hCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHH
Q 003942 310 IIGRGGETIKGLQTR------SGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEV 366 (784)
Q Consensus 310 VIGkgG~~IK~Iq~~------SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~ 366 (784)
|. +.|+.|... .+.+|.... ....|.|+|+++.++..+.||.++
T Consensus 191 l~----~~L~~~~~~~~~~~~~~~~v~ad~---------rtNsliv~~~~~~~~~i~~lI~~L 240 (246)
T 4e9j_A 191 AA----EVLNNAMSRGQAKGAAGAQVIADA---------RTNRLIILGPPQARAKLVQLAQSL 240 (246)
T ss_dssp HH----HHHHHHHHHTCSTTCTTCEEEEEG---------GGTEEEEESSHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHhccCCCCCCCceEEEEeC---------CCCeEEEECCHHHHHHHHHHHHHh
Confidence 21 223333222 123444432 234577899999999999998875
No 105
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=52.96 E-value=6.3 Score=39.66 Aligned_cols=29 Identities=28% Similarity=0.516 Sum_probs=24.0
Q ss_pred ccEEEEEecCCceeeeecCCchHHHHHHH
Q 003942 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQT 323 (784)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~ 323 (784)
...+++.|-..+-|.|||++|+.|++|+.
T Consensus 39 ~~~~~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 39 PLGTKVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp SSCCEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred CCeEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 45577788888889999999999998754
No 106
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp family, KH domain, ribonuclease, ME beta-lactamase superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB: 3af6_A*
Probab=52.04 E-value=8 Score=45.25 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=59.9
Q ss_pred ccccCCCchhhhhhhcccCceeeecccccccccceeeecCchhchhhhhhhhhHhhhcC-CCCC-CCCCCCCCeEEEEEe
Q 003942 129 NQQISVKEETKEVLFSTEEAFIDVKEETKEVTVKEEETVKEEESVEPSNVVPQQVVDNS-KSDD-PSSTDDSTMSRKIEV 206 (784)
Q Consensus 129 g~iIGk~Ge~Ik~iq~~s~a~I~I~~~~~~~s~r~~~i~G~~e~Ve~A~~lI~~ii~~~-~~~~-~~~~~~~~~t~rI~V 206 (784)
.+++-.+++.||+|-.+-..+|.|+.+... ...-++|+++|.+++-.+ .++. .+.+ .+-+|+|
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~ 113 (651)
T 3af5_A 49 PEAIMKDGELIKDLAKVLKKRISVRPDPEV-----------LLPPEEAEKLIFEIVPKEAEITNIAFDP----SVGEVLI 113 (651)
T ss_dssp CC-----CCSHHHHHHHHTSCEEEECCGGG-----------SCCHHHHHHHHHHHSCGGGCCCEEEEET----TTTEEEE
T ss_pred HHHhhcccHHHHHHHHHhhceEEEeCChhh-----------cCCHHHHHHHHHHhCCCccCccceeecC----CCceEEE
Confidence 356667788999987666666666655432 223467888999988432 2211 1111 1334555
Q ss_pred cCCccceeeccCcchHhhHHhhcCCEEEEcc
Q 003942 207 PNNKVGVLIGKAGDTIRYLQYNSGAKIQITR 237 (784)
Q Consensus 207 P~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~ 237 (784)
-..+-|++|||.|+++++|.++++-+..+..
T Consensus 114 ~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~ 144 (651)
T 3af5_A 114 EAKKPGLVIGKNGETLRLITQKVKWAPKVVR 144 (651)
T ss_dssp EESSTTTTSCTTSHHHHHHHHHHCSEEEEEE
T ss_pred EECCCCccccccchhHHHHhhccCccccccc
Confidence 5566689999999999999999998777765
No 107
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=51.48 E-value=4.5 Score=41.57 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=26.1
Q ss_pred CccEEEEEecCCceeeeecCCchHHHHHHHH
Q 003942 294 AAEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324 (784)
Q Consensus 294 ~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~ 324 (784)
....++|.|-..+-|.|||++|..|++|+..
T Consensus 42 t~~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 42 TPTRTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp ETTEECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred cCCcEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 3457788888889999999999999988764
No 108
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=50.70 E-value=11 Score=43.98 Aligned_cols=95 Identities=22% Similarity=0.368 Sum_probs=63.8
Q ss_pred eeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhhcCCCCcccccccchhhcc
Q 003942 213 VLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQAS 292 (784)
Q Consensus 213 ~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~~~g~p~~~~~g~~~~~~~ 292 (784)
.++=.+++.||+|-++..-+|.|..+.+ ....-++|+++|.+++-++.. ...+. |
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~--~~~~~---~------ 95 (636)
T 2ycb_A 41 EIITENGNLIRDIAKDIRKRIIIRSDRS--------------VLMDPEKAIRKIHEIVPEEAK--ITNIS---F------ 95 (636)
T ss_dssp HHHHSCTHHHHHHHHHHTSCEEEEECGG--------------GCCCHHHHHHHHHHTSCSTTC--EEEEE---E------
T ss_pred HHhhcccHHHHHHHHHhhceEEEeCChh--------------hcCCHHHHHHHHHHhCCCccC--ccceE---e------
Confidence 3455778999999999999999986521 112346788999998866411 00000 0
Q ss_pred CCccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEecc
Q 003942 293 GAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIP 333 (784)
Q Consensus 293 ~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~ 333 (784)
...+-++.|=..+-|+||||.|.++++|..++|-+-.+.+
T Consensus 96 -~~~~~~v~~~~~~p~~~~g~~~~~~~~i~~~~~~~~~~~~ 135 (636)
T 2ycb_A 96 -DDVTCEVIIEARKPGLVIGKYGSTSREIVKNTGWAPKILR 135 (636)
T ss_dssp -ETTTTEEEEEESCTHHHHCTTSHHHHHHHHHHCCEEEEEE
T ss_pred -cCCCceEEEEECCCCccccccchhHHHHhhccCCccceee
Confidence 0112234444455589999999999999999999866654
No 109
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=46.90 E-value=1e+02 Score=30.07 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=22.0
Q ss_pred CcEEEec--chhhHHHHHHHHHHHHHhh
Q 003942 248 RPVEIIG--TLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 248 R~V~I~G--~~e~V~kA~~~I~elI~e~ 273 (784)
..|.|+| +.+.+.+|++.|.++|++.
T Consensus 59 GKiv~TGaks~e~~~~a~~~i~~~L~~l 86 (180)
T 1ytb_A 59 GKMVVTGAKSEDDSKLASRKYARIIQKI 86 (180)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHHHc
Confidence 3678888 7789999999999999876
No 110
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=45.52 E-value=17 Score=35.40 Aligned_cols=45 Identities=13% Similarity=0.042 Sum_probs=37.7
Q ss_pred EEEEecCCccceeeccCcc-hHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecc
Q 003942 202 RKIEVPNNKVGVLIGKAGD-TIRYLQYNSGAKIQITRDADADPHAATRPVEIIGT 255 (784)
Q Consensus 202 ~rI~VP~~~vG~IIGkgG~-tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~ 255 (784)
+-|.|+..++.++|+|.+. +|+.|.+.+++.|.|-.+ -.|.|.+.
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~N---------G~IWi~~~ 138 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGLN---------GKIWVKCE 138 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEETT---------TEEEEECS
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEECC---------cEEEEecC
Confidence 4577899999999998888 999999999999999753 47788873
No 111
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=45.40 E-value=7.3 Score=39.82 Aligned_cols=37 Identities=24% Similarity=0.602 Sum_probs=27.5
Q ss_pred ccEEEEEecCCceeeeecCCchHHHHHHH----HhCCeEEe
Q 003942 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQT----RSGARIQL 331 (784)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~----~SGarIqI 331 (784)
...++|.|-...-|.|||++|+.|++|+. .++..|+|
T Consensus 61 ~~~i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~~~v~I 101 (233)
T 3i1m_C 61 AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 101 (233)
T ss_dssp SSCBCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHTSCBCC
T ss_pred CCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 34566777778889999999999997764 56655443
No 112
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=44.32 E-value=7.1 Score=39.19 Aligned_cols=38 Identities=24% Similarity=0.561 Sum_probs=28.3
Q ss_pred ccEEEEEecCCceeeeecCCchHHHHHH----HHhCCeEEec
Q 003942 295 AEQVEIKVPNEKVGLIIGRGGETIKGLQ----TRSGARIQLI 332 (784)
Q Consensus 295 ~~~~~i~VP~~~vG~VIGkgG~~IK~Iq----~~SGarIqI~ 332 (784)
...++|.|-...-|.|||++|+.|++|+ +.++.+|+|.
T Consensus 60 ~~~i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I~ 101 (206)
T 3r8n_C 60 AKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN 101 (206)
T ss_dssp SSSBCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCCB
T ss_pred CCeEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEEE
Confidence 3456677777888999999999998776 4567665553
No 113
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=43.67 E-value=7 Score=39.76 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=25.3
Q ss_pred CeEEEEEecCCccceeeccCcchHhhHHhh
Q 003942 199 TMSRKIEVPNNKVGVLIGKAGDTIRYLQYN 228 (784)
Q Consensus 199 ~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~ 228 (784)
....+|.|-..+-|.|||++|..|++|+++
T Consensus 43 ~~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 43 PMRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp TTEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred CCcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 346788888899999999999999988764
No 114
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=43.49 E-value=44 Score=33.89 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=45.7
Q ss_pred EEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHH
Q 003942 298 VEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGD-MRQIEIAQEMIKEV 366 (784)
Q Consensus 298 ~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt-~~qV~~Ak~lI~~~ 366 (784)
+-+.|...++.+++|+++..|+.|.++++|+|.|-. +..|-|.+. .+.+..+...|..+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~----------NG~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR----------NGRIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET----------TTEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC----------CCEEEEecCCHHHHHHHHHHHHHH
Confidence 556888999999999999999999999999999843 556778865 55555555555544
No 115
>2y9k_A Protein INVG; protein transport, type III secretion system, outer membrane secretin family, C15 fold; 8.30A {Salmonella enterica subsp}
Probab=43.17 E-value=1.3e+02 Score=27.50 Aligned_cols=112 Identities=6% Similarity=0.059 Sum_probs=64.3
Q ss_pred chHhhHHhhcCCEEEEccC-CCCCCCCCCCcEEEec--chhhHHHHHHHHHHHHHhhhcCCCCcccccccchhhccCCcc
Q 003942 220 DTIRYLQYNSGAKIQITRD-ADADPHAATRPVEIIG--TLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAE 296 (784)
Q Consensus 220 ~tIK~Iq~~TGakI~V~~~-~~~~p~s~eR~V~I~G--~~e~V~kA~~~I~elI~e~~~~g~p~~~~~g~~~~~~~~~~~ 296 (784)
+.|+.|-+.+|..|.|..+ - .. +|+| .......++..|.+...-... ....
T Consensus 11 ~vl~~la~~~~~~ivvs~~~v-------~g--~vsg~l~~~~~~~~l~~l~~~~gl~~~-----------------~~G~ 64 (137)
T 2y9k_A 11 TFFDAMALQLKEPVIVSKMAA-------RK--KITGNFEFHDPNALLEKLSLQLGLIWY-----------------FDGQ 64 (137)
T ss_dssp HHHHHHHHHTTCCEEECHHHH-------CS--EEEEEECSCCHHHHHHHHHHHHTEEEE-----------------ECSS
T ss_pred HHHHHHHHhcCCCEEECchhc-------cc--eEEEEEcCCCHHHHHHHHHHHcCeEEE-----------------EECC
Confidence 5678899999999999742 1 12 3444 333555555555554322110 0111
Q ss_pred EEEEEecCCceeeeecCCchHHHHHHHHh--------CCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHH
Q 003942 297 QVEIKVPNEKVGLIIGRGGETIKGLQTRS--------GARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEV 366 (784)
Q Consensus 297 ~~~i~VP~~~vG~VIGkgG~~IK~Iq~~S--------GarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~ 366 (784)
.+.|.=..+.+-.+|=-+....++|.+.- .+.|.+ +...++|.|+|++..|+..+++|..+
T Consensus 65 vl~V~~~~e~~t~~i~l~~~~a~~l~~~L~~~~ll~~rg~v~~---------d~~tn~l~v~g~~~~v~~v~~~i~~l 133 (137)
T 2y9k_A 65 AIYIYDASEMRNAVVSLRNVSLNEFNNFLKRSGLYNKNYPLRG---------DNRKGTFYVSGPPVYVDMVVNAATMM 133 (137)
T ss_dssp CEEEEEGGGCEEEEEECSSSCHHHHHHHHCCTTCCCSSSCEEE---------CSSTTEEEEEECHHHHHHHHHHHHHH
T ss_pred EEEEEechheEEEEEEcCCCCHHHHHHHHHHcCCCCCCCceEE---------CCCCCEEEEECcHHHHHHHHHHHHHh
Confidence 22222222445566655565555555432 233443 33567899999999999999988765
No 116
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit; hydrolase, metallo-beta-lactamase, beta-CAsp, RNA processing; 2.59A {Methanosarcina mazei}
Probab=42.09 E-value=10 Score=44.34 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=62.4
Q ss_pred cccCCCchhhhhhhcccCceeeecccccccccceeeecCchhchhhhhhhhhHhhhcC-CCC-CCCCCCCCCeEEEEEec
Q 003942 130 QQISVKEETKEVLFSTEEAFIDVKEETKEVTVKEEETVKEEESVEPSNVVPQQVVDNS-KSD-DPSSTDDSTMSRKIEVP 207 (784)
Q Consensus 130 ~iIGk~Ge~Ik~iq~~s~a~I~I~~~~~~~s~r~~~i~G~~e~Ve~A~~lI~~ii~~~-~~~-~~~~~~~~~~t~rI~VP 207 (784)
+++-.+++.||+|-.+-..+|.|+.+... ...-++|+++|.+++-.+ .++ ..+.+ .+-+|+|-
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~ 109 (640)
T 2xr1_A 45 RKFADDGNIIRNLAKELRTRIAMRPDPRV-----------LATPEDSISIIEEVVPKESVISSYYFDP----DSGEVIIE 109 (640)
T ss_dssp HHHHHCTHHHHHHHHHHTSCEEEEECGGG-----------CCCHHHHHHHHHHHSCGGGCEEEEEECT----TTSEEEEE
T ss_pred HHhccccHHHHHHHHHhhceEEEeCChhh-----------cCCHHHHHHHHHHhCCCccCccceeecC----CCceEEEE
Confidence 55567788999987666666666655432 223467888898888432 111 11111 13345555
Q ss_pred CCccceeeccCcchHhhHHhhcCCEEEEcc
Q 003942 208 NNKVGVLIGKAGDTIRYLQYNSGAKIQITR 237 (784)
Q Consensus 208 ~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~ 237 (784)
..+-|++|||.|+++++|.++++-+..+..
T Consensus 110 ~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~ 139 (640)
T 2xr1_A 110 AEKPGLVIGKHGATLREITKQIGWIPKVVR 139 (640)
T ss_dssp ESSHHHHHCSSSHHHHHHHHHHCSEEEEEE
T ss_pred eCCCCcccccchhhHHHHHhccCccccccc
Confidence 566689999999999999999998777765
No 117
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor; hydrolase, KH, metallo-beta-lactamase; 3.10A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=41.82 E-value=9.4 Score=44.51 Aligned_cols=94 Identities=17% Similarity=0.149 Sum_probs=62.7
Q ss_pred ccccCCCchhhhhhhcccCceeeecccccccccceeeecCchhchhhhhhhhhHhhhcCC-CC-CCCCCCCCCeEEEEEe
Q 003942 129 NQQISVKEETKEVLFSTEEAFIDVKEETKEVTVKEEETVKEEESVEPSNVVPQQVVDNSK-SD-DPSSTDDSTMSRKIEV 206 (784)
Q Consensus 129 g~iIGk~Ge~Ik~iq~~s~a~I~I~~~~~~~s~r~~~i~G~~e~Ve~A~~lI~~ii~~~~-~~-~~~~~~~~~~t~rI~V 206 (784)
.+++-.+++.|++|-.+-..+|.|+.+... ...-++|+++|.+++-.+. ++ ..+.+ .+-+|+|
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~ 104 (636)
T 2ycb_A 40 PEIITENGNLIRDIAKDIRKRIIIRSDRSV-----------LMDPEKAIRKIHEIVPEEAKITNISFDD----VTCEVII 104 (636)
T ss_dssp THHHHSCTHHHHHHHHHHTSCEEEEECGGG-----------CCCHHHHHHHHHHTSCSTTCEEEEEEET----TTTEEEE
T ss_pred HHHhhcccHHHHHHHHHhhceEEEeCChhh-----------cCCHHHHHHHHHHhCCCccCccceEecC----CCceEEE
Confidence 355667889999997666666666655432 2234678888998884321 11 01111 1234555
Q ss_pred cCCccceeeccCcchHhhHHhhcCCEEEEcc
Q 003942 207 PNNKVGVLIGKAGDTIRYLQYNSGAKIQITR 237 (784)
Q Consensus 207 P~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~ 237 (784)
-..+-|++|||.|.++++|.++++.+-.+.+
T Consensus 105 ~~~~p~~~~g~~~~~~~~i~~~~~~~~~~~~ 135 (636)
T 2ycb_A 105 EARKPGLVIGKYGSTSREIVKNTGWAPKILR 135 (636)
T ss_dssp EESCTHHHHCTTSHHHHHHHHHHCCEEEEEE
T ss_pred EECCCCccccccchhHHHHhhccCCccceee
Confidence 5556699999999999999999998777765
No 118
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=40.21 E-value=8.9 Score=39.33 Aligned_cols=28 Identities=36% Similarity=0.580 Sum_probs=22.3
Q ss_pred EEEEEecCCccceeeccCcchHhhHHhh
Q 003942 201 SRKIEVPNNKVGVLIGKAGDTIRYLQYN 228 (784)
Q Consensus 201 t~rI~VP~~~vG~IIGkgG~tIK~Iq~~ 228 (784)
..+|.|-..+-|.|||++|+.|++|+++
T Consensus 63 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 63 NVAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp CBCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred eEEEEEEeCCCcceecCCchHHHHHHHH
Confidence 3456666678899999999999888764
No 119
>3io0_A ETUB protein; tamdem repeat of bacterial microcompartment domain in A single polypeptide chain, structural protein; 3.00A {Clostridium kluyveri dsm 555}
Probab=39.96 E-value=1.4e+02 Score=30.20 Aligned_cols=126 Identities=10% Similarity=0.147 Sum_probs=69.2
Q ss_pred hHHhhcCCEEEE---ccCCCCCCCCCCC-cEEEec-chhhHHHHHHHHHHHHHhhhcCCCCcccccccchhhccCCccEE
Q 003942 224 YLQYNSGAKIQI---TRDADADPHAATR-PVEIIG-TLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQV 298 (784)
Q Consensus 224 ~Iq~~TGakI~V---~~~~~~~p~s~eR-~V~I~G-~~e~V~kA~~~I~elI~e~~~~g~p~~~~~g~~~~~~~~~~~~~ 298 (784)
..-+.++++|.. .+. .+++.... .+.+.| +...|+.|++...+.+++...... .. ....+
T Consensus 58 ~AvKaA~Velv~i~lar~--~~~G~G~g~~ii~gg~dVs~V~sAve~~~~~~~~~~~~~~---~~----------~~gh~ 122 (230)
T 3io0_A 58 EAVKGTNTEVATIELPRD--TKGGAGHGIFIVLKAADVSDARRAVEIALKQTDKYLGNVY---LC----------DAGHL 122 (230)
T ss_dssp HHHHTSSCEEEEEECCSC--SSSSSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHHTTEE---EE----------TTEEE
T ss_pred HHHhhcCeEEEEEecccc--ccCCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhe---ec----------CCCcE
Confidence 334556666655 332 22322233 344444 899999999999988877532100 00 00011
Q ss_pred EE--------------Eec-CCceeeeecCCch-HHH---HHHHHhCCeEE-eccCCCCCC--CCCCceEEEEEcCHHHH
Q 003942 299 EI--------------KVP-NEKVGLIIGRGGE-TIK---GLQTRSGARIQ-LIPQHLPEG--DGSKERIVRVTGDMRQI 356 (784)
Q Consensus 299 ~i--------------~VP-~~~vG~VIGkgG~-~IK---~Iq~~SGarIq-I~~~~~p~~--~~~~er~V~I~Gt~~qV 356 (784)
++ .++ .+.+|.|++.--+ -|. ..-+...++|. +.... .+ ..+.+-.++|+|+..+|
T Consensus 123 ~~~v~ar~~~al~~~~g~~~g~AiGil~~~p~~~~i~aaD~AlKaA~V~l~~~~~~~--~g~~~~snk~~~~itGdvsAV 200 (230)
T 3io0_A 123 EVQYTARASLIFEKAFGAPSGQAFGIMHAAPAGVGMIVADTALKTADVKLITYGSPT--NGVLSYTNEILITISGDSGAV 200 (230)
T ss_dssp EEEEESSCCHHHHHHHCCCTTSEEEEEEEESHHHHHHHHHHHHHHSCCEEEEEECSS--SSSSSSCSCEEEEEEECHHHH
T ss_pred EEEEecChHHHHHHhhCCCCCceEEEEEcCCHHHHHHHHHHHHhhCCeEEEEEEcCC--CCcccccceEEEEEEEcHHHH
Confidence 11 122 2567888887764 232 22344566654 33211 11 24566789999999999
Q ss_pred HHHHHHHHHH
Q 003942 357 EIAQEMIKEV 366 (784)
Q Consensus 357 ~~Ak~lI~~~ 366 (784)
+.|.+...+.
T Consensus 201 ~~Av~a~~~~ 210 (230)
T 3io0_A 201 LQSLTAARKA 210 (230)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777653
No 120
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=39.85 E-value=1e+02 Score=30.91 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=36.2
Q ss_pred CeEEEEEecCCccceeeccCcchHhhHHhhc-CCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHH
Q 003942 199 TMSRKIEVPNNKVGVLIGKAGDTIRYLQYNS-GAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAV 269 (784)
Q Consensus 199 ~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~T-GakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~el 269 (784)
.++.-|.+-...+..|+ ..|+.|-... +.+|.+... ...|.|+|+.+.|++++++|..+
T Consensus 107 ~~t~vi~L~~~~a~~l~----~~L~~l~~~~~~g~v~~d~~--------~N~Liv~g~~~~i~~i~~li~~l 166 (241)
T 3ezj_A 107 MVTKVVPVRNVSVRELA----PILRQMIDSAGSGNVVNYDP--------SNVIMLTGRASVVERLTEVIQRV 166 (241)
T ss_dssp EEEEEEECCSSCGGGTH----HHHHHHHHHHCSSCEEEEET--------TTEEEEEEEHHHHHHHHHHHHHH
T ss_pred eEEEEEEecccCHHHHH----HHHHHHhCcCCcceEEEcCC--------ccEEEEECCHHHHHHHHHHHHHh
Confidence 34555555555554443 2345544433 256666543 24789999999999888888765
No 121
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=38.02 E-value=11 Score=39.82 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=37.9
Q ss_pred EEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecc
Q 003942 202 RKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGT 255 (784)
Q Consensus 202 ~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~ 255 (784)
+-|.|+..++.+||++++..|+.|.+.+++.|.|-.+ -.|.|.+.
T Consensus 212 ~l~~Vs~~lvrrl~~~~~~~l~~L~~~~~~eI~vG~N---------G~IWI~~~ 256 (289)
T 2nn6_G 212 LLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFGMN---------GRIWVKAK 256 (289)
T ss_dssp EEECCCHHHHHHHHCTTCSHHHHTTCSSSCCCEEETT---------TEEEECCS
T ss_pred EEEEEChHHhhhhhcCchhHHHHhcccCCeEEEEECC---------cEEEEecC
Confidence 4577888899999999999999999999999998653 47788873
No 122
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=37.96 E-value=12 Score=38.44 Aligned_cols=29 Identities=41% Similarity=0.737 Sum_probs=23.1
Q ss_pred cEEEEEecCCceeeeecCCchHHHHHHHH
Q 003942 296 EQVEIKVPNEKVGLIIGRGGETIKGLQTR 324 (784)
Q Consensus 296 ~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~ 324 (784)
..++|.|-...-|.|||++|+.|++|+..
T Consensus 62 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 62 DNVAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp SCBCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred CeEEEEEEeCCCcceecCCchHHHHHHHH
Confidence 44566777778899999999999888654
No 123
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=37.68 E-value=19 Score=37.67 Aligned_cols=38 Identities=18% Similarity=0.320 Sum_probs=28.7
Q ss_pred CeEEEEEecCC-ccceeeccCcchHhhHHh--------hcCCEEEEc
Q 003942 199 TMSRKIEVPNN-KVGVLIGKAGDTIRYLQY--------NSGAKIQIT 236 (784)
Q Consensus 199 ~~t~rI~VP~~-~vG~IIGkgG~tIK~Iq~--------~TGakI~V~ 236 (784)
.+...|+|... ..+.||||+|++||+|.. -++++|.+.
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l~ 285 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYLE 285 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 45667777775 788899999999998744 567777664
No 124
>1in0_A YAJQ protein, HI1034; alpha and beta sandwich, structural genomics, structure 2 function project, S2F, unknown function; 2.14A {Haemophilus influenzae} SCOP: d.58.49.1 d.58.49.1
Probab=36.54 E-value=2.9e+02 Score=26.44 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHH
Q 003942 317 TIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGD-MRQIEIAQEMIKE 365 (784)
Q Consensus 317 ~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt-~~qV~~Ak~lI~~ 365 (784)
.|..+.+.++-+|+..- ....|.|+|. .+.++.++.||..
T Consensus 109 kIvK~IKdsklKVqa~I---------QGd~vRVtgKkrDDLQ~viallk~ 149 (163)
T 1in0_A 109 KITKLVKDSKIKVQTQI---------QGEQVRVTGKSRDDLQAVIQLVKS 149 (163)
T ss_dssp HHHHHHHHHTCSEEEEE---------ETTEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCcceeEe---------cCcEEEEecCCHHHHHHHHHHHHh
Confidence 34455667777766542 2346999998 7899999998875
No 125
>3u27_C Microcompartments protein; structural genomics, PSI-biology, MCSG, alpha-beta-alpha FOL bacterial microcompartment, shell protein; 1.85A {Leptotrichia buccalis c-1013-b}
Probab=36.41 E-value=2.9e+02 Score=27.75 Aligned_cols=139 Identities=14% Similarity=0.086 Sum_probs=74.8
Q ss_pred hHHhhcCCEEEEccCCC-----CCCCCCCCcE-EEec-chhhHHHHHHHHHHHHHhhhcC------CCCccc----cccc
Q 003942 224 YLQYNSGAKIQITRDAD-----ADPHAATRPV-EIIG-TLSNIDKAEKLINAVIAEADAG------GSPSLV----ARGL 286 (784)
Q Consensus 224 ~Iq~~TGakI~V~~~~~-----~~p~s~eR~V-~I~G-~~e~V~kA~~~I~elI~e~~~~------g~p~~~----~~g~ 286 (784)
..-+.+.++|.+.++.. .++..+-++| .|.| +...|+.|++...+.+.+...+ +...++ .|-.
T Consensus 56 ~A~KaA~Vel~~~r~~~gg~g~~~~~~~G~~i~iigG~dvs~V~~av~~~~~~~~~~~~~~~~~~~gh~~~~ah~ia~~~ 135 (220)
T 3u27_C 56 EATKKAVVDVAYGKSFYGGAANANTKLAGEVIGILSGPTPAEVKSGLAAAVDFIENEAAFISANDDDSIAYFAHCISRTG 135 (220)
T ss_dssp HHHHHSSCEEEEEEECTTCGGGCCSTTTTTEEEEEEESSHHHHHHHHHHHHHHHHHTCCEEECSTTSCCEEEEEEESSCC
T ss_pred HHHhhcCeEEEEEeeccccCcccccccCccEEEEecCCCHHHHHHHHHHHHHHHHhhHhheeccCCCCeEEEEeecCCcH
Confidence 34456677777665421 1111223344 6666 8999999999999988875311 001000 0000
Q ss_pred chhhccCCccEEEEEec-CCceeeeecCCchHHHHH---HHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHH
Q 003942 287 ATAQASGAAEQVEIKVP-NEKVGLIIGRGGETIKGL---QTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEM 362 (784)
Q Consensus 287 ~~~~~~~~~~~~~i~VP-~~~vG~VIGkgG~~IK~I---q~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~l 362 (784)
.- ....+-++ .+.+|.|++....-|.-. -+...++|.... +|... ....-+.|+|+-.+|+.|.+.
T Consensus 136 ~a-------l~~~~g~~~g~AiGil~~~p~~ai~aaD~A~KaA~V~l~~~~--~p~~~-~~~~g~~itGdvsAV~aAv~a 205 (220)
T 3u27_C 136 TY-------LSKTAGIPEGESLAYLIAPPLEAMYALDVALKAADVRLVAFY--GPPSE-TNFGGGLLTGSQSACKAACDA 205 (220)
T ss_dssp HH-------HHHHHTSCTTCCEEEEEESHHHHHHHHHHHHHHSSCEEEEEE--CSCCT-TSCEEEEEESCHHHHHHHHHH
T ss_pred HH-------HHHhcCCCCcceEEEEEcCCHHHHHHHHHHHhhCCeEEEEEE--cccCc-CcEEEEEEEEcHHHHHHHHHH
Confidence 00 00001122 267888888876444322 344566654221 11111 122238999999999999999
Q ss_pred HHHHHhcccC
Q 003942 363 IKEVLSQTVR 372 (784)
Q Consensus 363 I~~~L~~~~r 372 (784)
..+.++...+
T Consensus 206 ~~~a~~~~~~ 215 (220)
T 3u27_C 206 FAEAVKFVAD 215 (220)
T ss_dssp HHHHHC-CCS
T ss_pred HHHHHHHHhh
Confidence 9998865543
No 126
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=35.75 E-value=1.6e+02 Score=29.94 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=22.0
Q ss_pred CcEEEec--chhhHHHHHHHHHHHHHhh
Q 003942 248 RPVEIIG--TLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 248 R~V~I~G--~~e~V~kA~~~I~elI~e~ 273 (784)
..|.|+| +.+.+.+|++.|.++|++.
T Consensus 119 GKiV~TGaks~e~a~~A~~~i~~~L~~l 146 (240)
T 1rm1_A 119 GKMVVTGAKSEDDSKLASRKYARIIQKI 146 (240)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHHHc
Confidence 3678888 7789999999999999876
No 127
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=35.62 E-value=9.1 Score=39.32 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.2
Q ss_pred eEEEEEecCCccceeeccCcchHhhHHhh
Q 003942 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYN 228 (784)
Q Consensus 200 ~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~ 228 (784)
...+|.|-..+-|.|||++|..|++|+++
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 46788888889999999999999998765
No 128
>2jpw_A Troponin I, cardiac muscle; poly (L-proline) II helix, contractIle protein; HET: SEP; NMR {Synthetic}
Probab=35.06 E-value=8.8 Score=26.40 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=14.4
Q ss_pred CCcccccccC--CCccchhhhh
Q 003942 1 MAEEEVLAPA--SAAAADLKRK 20 (784)
Q Consensus 1 ~~eee~~~~~--~~~~~d~krk 20 (784)
||+||+.|+. -+.|...+||
T Consensus 1 Made~~~~~~~~~PaP~p~RRr 22 (32)
T 2jpw_A 1 MADESSDAAGEPQPAPAPVRRR 22 (32)
T ss_dssp CCSTTHHHHSCCCCCCCCCCCT
T ss_pred CccccccCCCCCCCCCcccccc
Confidence 8999999984 3455666665
No 129
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=34.66 E-value=67 Score=26.07 Aligned_cols=26 Identities=15% Similarity=0.150 Sum_probs=20.0
Q ss_pred CCcEEEecchhhHHHHHHHHHHHHHh
Q 003942 247 TRPVEIIGTLSNIDKAEKLINAVIAE 272 (784)
Q Consensus 247 eR~V~I~G~~e~V~kA~~~I~elI~e 272 (784)
+..|.|+|.+++|.+-+..-.+.+..
T Consensus 41 dleiritgvpeqvrkelakeaerlak 66 (85)
T 2kl8_A 41 DLEIRITGVPEQVRKELAKEAERLAK 66 (85)
T ss_dssp CEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred eeEEEEecChHHHHHHHHHHHHHHHH
Confidence 67899999999999877655555544
No 130
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.57 E-value=8.7 Score=38.66 Aligned_cols=27 Identities=30% Similarity=0.457 Sum_probs=22.6
Q ss_pred EEEEEecCCccceeeccCcchHhhHHh
Q 003942 201 SRKIEVPNNKVGVLIGKAGDTIRYLQY 227 (784)
Q Consensus 201 t~rI~VP~~~vG~IIGkgG~tIK~Iq~ 227 (784)
..+|.|-..+-|.|||++|..|++|+.
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 456777778899999999999988765
No 131
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=31.90 E-value=28 Score=36.24 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=24.9
Q ss_pred EEEEecC-CceeeeecCCchHHHHHH--------HHhCCeEEe
Q 003942 298 VEIKVPN-EKVGLIIGRGGETIKGLQ--------TRSGARIQL 331 (784)
Q Consensus 298 ~~i~VP~-~~vG~VIGkgG~~IK~Iq--------~~SGarIqI 331 (784)
..|.|-. .+.+.|||++|++||+|- ...|++|.+
T Consensus 233 ~~i~v~~~~~k~i~ig~~G~~~k~ig~~ar~~i~~~~~~~v~l 275 (301)
T 1ega_A 233 GLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHL 275 (301)
T ss_dssp EEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHTTSCEEE
T ss_pred EEEEEEECCceEEEECCCcHHHHHHHHHHHHHHHHHHCCCeEE
Confidence 4555544 577999999999999654 556777665
No 132
>3gr5_A ESCC; secretin, type III secretion system, outer membrane, transport, membrane protein; 2.05A {Escherichia coli}
Probab=31.79 E-value=1.3e+02 Score=28.46 Aligned_cols=115 Identities=12% Similarity=-0.006 Sum_probs=63.1
Q ss_pred chHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhhcCCCCcccccccchhhccCCccEEE
Q 003942 220 DTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVE 299 (784)
Q Consensus 220 ~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~~~g~p~~~~~g~~~~~~~~~~~~~~ 299 (784)
..|+.|-+.+|..|.|+..- ...|++.=....-+++++.|.....-... . ....+.
T Consensus 27 ~vL~~lA~~~g~nivvs~~V-------~G~vs~rl~~~~~~q~L~~l~~~~gL~~~-------~----------dG~vl~ 82 (156)
T 3gr5_A 27 AILNDFAANYSIPVFISSSV-------NDDFSGEIKNEKPVKVLEKLSKLYHLTWY-------Y----------DENILY 82 (156)
T ss_dssp HHHHHHHHHTTCCEEECTTC-------CCEEEEEEEEECHHHHHHHHHHHHTEEEE-------E----------CSSCEE
T ss_pred HHHHHHHHhhCCCEEECCCc-------ceEEEEEecCCCHHHHHHHHHHHCCceEE-------E----------ECCEEE
Confidence 56889999999999998542 12233221223455555555553321100 0 001111
Q ss_pred EEecCCceeeeecCCchHHHHHHHH---h------CCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q 003942 300 IKVPNEKVGLIIGRGGETIKGLQTR---S------GARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVL 367 (784)
Q Consensus 300 i~VP~~~vG~VIGkgG~~IK~Iq~~---S------GarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L 367 (784)
|.=-.++.-.+|=-+-....+|.+. . +|.|.+. ....+|.|+|++..|+.-+++|..+=
T Consensus 83 V~~~~e~~t~~i~l~~a~a~~l~~~L~~~~ll~~r~~~v~~d---------~~tn~l~Vsg~p~~v~~v~~~i~~LD 150 (156)
T 3gr5_A 83 IYKTNEISRSIITPTYLDIDSLLKYLSDTISVNKNSCNVRKI---------TTFNSIEVRGVPECIKYITSLSESLD 150 (156)
T ss_dssp EEEGGGCEEEEECCSSSCHHHHHHHHTTSSCCEETTEEEEEC---------SSTTCEEEEECHHHHHHHHHHHHHHH
T ss_pred EEchHHhEEEEEEecCCCHHHHHHHHHhcCCccCCCCeEEEe---------CCCCEEEEEcCHHHHHHHHHHHHHHh
Confidence 1111234455555555555555442 1 2455553 24668999999999999999888753
No 133
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=31.71 E-value=6.8 Score=40.27 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=24.9
Q ss_pred eEEEEEecCCccceeeccCcchHhhHHhh
Q 003942 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYN 228 (784)
Q Consensus 200 ~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~ 228 (784)
...+|.|-..+-|.|||++|..|++|+++
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 46678888889999999999999998775
No 134
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=31.24 E-value=19 Score=37.79 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=25.8
Q ss_pred EEEecC-CceeeeecCCchHHHHH--------HHHhCCeEEec
Q 003942 299 EIKVPN-EKVGLIIGRGGETIKGL--------QTRSGARIQLI 332 (784)
Q Consensus 299 ~i~VP~-~~vG~VIGkgG~~IK~I--------q~~SGarIqI~ 332 (784)
.|.|-+ +..+.||||+|++||+| ++..+++|.+.
T Consensus 233 ~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l~ 275 (301)
T 1wf3_A 233 ILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLD 275 (301)
T ss_dssp EEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred EEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEEE
Confidence 445555 67899999999999965 45678888774
No 135
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C
Probab=31.16 E-value=78 Score=31.90 Aligned_cols=103 Identities=12% Similarity=0.068 Sum_probs=54.1
Q ss_pred ceeeecCc--hhchhhhhhhhhHhhhcCCCCCCCCCCCCCeEEEEEecCCccceeeccCcchHhhHHhhc----------
Q 003942 162 KEEETVKE--EESVEPSNVVPQQVVDNSKSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNS---------- 229 (784)
Q Consensus 162 r~~~i~G~--~e~Ve~A~~lI~~ii~~~~~~~~~~~~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~T---------- 229 (784)
-.+.++|. .+.+..|.+.|.++|....+.... ..+++.-.|-...++.=| +|+.|-...
T Consensus 97 GKiV~TGAkS~e~a~~A~~ki~~~L~~lG~~v~~----~~fkIqNIvas~dl~f~I-----~Le~la~~~~~~~~YEPE~ 167 (218)
T 3eik_A 97 GKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATF----DDFKIQNIVSSCDIKFSI-----RLEGLAYAHSNYCSYEPEL 167 (218)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHHTTCCCCC----EEEEEEEEEEEEECSSCB-----CHHHHHHHSTTTEECCTTT
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHHHcCCCccc----ccceEEEEEEEEECCCcC-----cHHHHHHhccCCcEECCcc
Confidence 34455544 677777778888888765542211 234444445444444333 233333222
Q ss_pred --CCEEEEccCCCCCCCCCCCcEEEec--chhhHHHHHHHHHHHHHhh
Q 003942 230 --GAKIQITRDADADPHAATRPVEIIG--TLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 230 --GakI~V~~~~~~~p~s~eR~V~I~G--~~e~V~kA~~~I~elI~e~ 273 (784)
|+..++.+..-..---..-.|+|+| +.+.+.+|++.|..+|.+.
T Consensus 168 fPGliyR~~~pkvt~lIF~SGKiviTGaks~~d~~~A~~~I~p~L~~f 215 (218)
T 3eik_A 168 FPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQAFNNIYPVLIQH 215 (218)
T ss_dssp SSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCEEEEEeCCCeEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 2222221100000000134668888 4689999999999999885
No 136
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=31.03 E-value=8.2 Score=38.72 Aligned_cols=28 Identities=25% Similarity=0.541 Sum_probs=22.4
Q ss_pred EEEEEecCCccceeeccCcchHhhHHhh
Q 003942 201 SRKIEVPNNKVGVLIGKAGDTIRYLQYN 228 (784)
Q Consensus 201 t~rI~VP~~~vG~IIGkgG~tIK~Iq~~ 228 (784)
..+|.|-..+-|.|||++|+.|++|+++
T Consensus 62 ~i~I~I~~~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 62 SIRVTIHTARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp SBCCEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHH
Confidence 4566677778899999999999888653
No 137
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=30.70 E-value=38 Score=35.93 Aligned_cols=67 Identities=12% Similarity=0.128 Sum_probs=44.9
Q ss_pred CCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhh
Q 003942 198 STMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 198 ~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~ 273 (784)
..+.++|+.|.. ..|| +.+..|+..+|-.+.....+. +++.....|+|..-||..|+.++..+|...
T Consensus 198 ~~f~~KVl~pY~--~~v~----e~l~~lq~~fgg~lvr~P~SR---nst~EmY~vsGa~gNIV~aVn~tSr~Ll~R 264 (321)
T 3lkz_A 198 REFCVKVLCPYM--PKVI----EKMELLQRRYGGGLVRNPLSR---NSTHEMYWVSRASGNVVHSVNMTSQVLLGR 264 (321)
T ss_dssp CEEEEEESCTTS--HHHH----HHHHHHHHHHCCEEECCTTSC---TTCCCEEEETTCCSCHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCC--hHHH----HHHHHHHHHhCCEeEeCCCCC---CCcceEEEEecCCCCeeeeHHHHHHHHHHH
Confidence 357778887732 2222 678889998885444433222 455667788889999999999887755443
No 138
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=30.10 E-value=15 Score=37.54 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=24.4
Q ss_pred eEEEEEecCCccceeeccCcchHhhHHhh
Q 003942 200 MSRKIEVPNNKVGVLIGKAGDTIRYLQYN 228 (784)
Q Consensus 200 ~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~ 228 (784)
...+|.|-..+-|.|||++|..|++|+.+
T Consensus 44 ~~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 44 TKTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp SCEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 35678888889999999999999988764
No 139
>4e9j_A General secretion pathway protein D; homodimer, XCPQ, periplasmic domain, structural protein, PER space, outer membrane; 2.03A {Pseudomonas aeruginosa} PDB: 4ec5_A
Probab=29.32 E-value=1.4e+02 Score=30.09 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=52.5
Q ss_pred ccceeeecCchhchhhhhhhhhHhhhcCCCCCCCCCCCCCeEEEEEecCCccceeeccCcchHhhHHhh------cCCEE
Q 003942 160 TVKEEETVKEEESVEPSNVVPQQVVDNSKSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYN------SGAKI 233 (784)
Q Consensus 160 s~r~~~i~G~~e~Ve~A~~lI~~ii~~~~~~~~~~~~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~------TGakI 233 (784)
....+.|+|+.++++.++++|..+-.... ..+.-|.+-...+..|. +.|+.|... .+.+|
T Consensus 147 ~tN~Liv~g~~~~i~~i~~li~~lD~p~~----------~~~~vi~l~~a~A~dl~----~~L~~~~~~~~~~~~~~~~v 212 (246)
T 4e9j_A 147 SANALIISDRSANIARIEDVIRQLDQKGS----------HDYSVINLRYGWVMDAA----EVLNNAMSRGQAKGAAGAQV 212 (246)
T ss_dssp GGTEEEEEECHHHHHHHHHHHHHHHTCSC----------CCEEEEECSSSCHHHHH----HHHHHHHHHTCSTTCTTCEE
T ss_pred CCCEEEEEcCHHHHHHHHHHHHHhccccc----------cceEEEEecCCCHHHHH----HHHHHHhccCCCCCCCceEE
Confidence 34678899999999999999988763221 13445555555544332 223333222 12455
Q ss_pred EEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHH
Q 003942 234 QITRDADADPHAATRPVEIIGTLSNIDKAEKLINA 268 (784)
Q Consensus 234 ~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~e 268 (784)
..... ...|.|+++.+.+.+.+++|..
T Consensus 213 ~ad~r--------tNsliv~~~~~~~~~i~~lI~~ 239 (246)
T 4e9j_A 213 IADAR--------TNRLIILGPPQARAKLVQLAQS 239 (246)
T ss_dssp EEEGG--------GTEEEEESSHHHHHHHHHHHHH
T ss_pred EEeCC--------CCeEEEECCHHHHHHHHHHHHH
Confidence 55533 2356788998888776666655
No 140
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=29.22 E-value=8.7 Score=39.24 Aligned_cols=28 Identities=25% Similarity=0.541 Sum_probs=22.6
Q ss_pred EEEEEecCCccceeeccCcchHhhHHhh
Q 003942 201 SRKIEVPNNKVGVLIGKAGDTIRYLQYN 228 (784)
Q Consensus 201 t~rI~VP~~~vG~IIGkgG~tIK~Iq~~ 228 (784)
.++|.|-..+-|.|||++|+.|++|+.+
T Consensus 63 ~i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 63 SIRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp CBCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHH
Confidence 4566677778899999999999888653
No 141
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=29.17 E-value=1e+02 Score=30.02 Aligned_cols=101 Identities=12% Similarity=0.075 Sum_probs=52.7
Q ss_pred ceeeecC--chhchhhhhhhhhHhhhcCCCCCCCCCCCCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCC
Q 003942 162 KEEETVK--EEESVEPSNVVPQQVVDNSKSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDA 239 (784)
Q Consensus 162 r~~~i~G--~~e~Ve~A~~lI~~ii~~~~~~~~~~~~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~ 239 (784)
-.+.++| +.+++..|.+.|.++|....+.... ..++++=.|-+..++.= -+|+.|-...+..+....
T Consensus 59 GKiv~TGaks~e~~~~a~~~i~~~L~~lg~~~~~----~~~~i~NIvas~dl~~~-----I~Le~la~~~~~~~~YEP-- 127 (180)
T 1ytb_A 59 GKMVVTGAKSEDDSKLASRKYARIIQKIGFAAKF----TDFKIQNIVGSCDVKFP-----IRLEGLAFSHGTFSSYEP-- 127 (180)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHHHTCCCCC----EEEEEEEEEEEEECSSC-----BCHHHHHHHTTTTEECCT--
T ss_pred CeEEEEecCCHHHHHHHHHHHHHHHHHcCCCccc----ccceEEEEEEEEECCCc-----cCHHHHHHhcccceEECC--
Confidence 4556666 5677888888888888655442111 12332222222223222 234444433332222111
Q ss_pred CCCCCC--------------CCCcEEEec--chhhHHHHHHHHHHHHHhh
Q 003942 240 DADPHA--------------ATRPVEIIG--TLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 240 ~~~p~s--------------~eR~V~I~G--~~e~V~kA~~~I~elI~e~ 273 (784)
+..|+. ....|.|+| +.+.+.+|++.|..+|.+.
T Consensus 128 E~fPGliyR~~~pkv~~lIF~SGkivitGak~~~~~~~a~~~i~p~L~~~ 177 (180)
T 1ytb_A 128 ELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKQREEIYQAFEAIYPVLSEF 177 (180)
T ss_dssp TTCSSEEEECSSSCCEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEeCCCcEEEEEecCCeEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 111110 123567888 4579999999999998875
No 142
>2kie_A Inositol polyphosphate 5-phosphatase OCRL-1; INPP5B, clathrin, endocytosis, alternative splicing, cataract, disease mutation, hydrolase; NMR {Homo sapiens}
Probab=28.96 E-value=1.3e+02 Score=27.16 Aligned_cols=57 Identities=30% Similarity=0.370 Sum_probs=37.4
Q ss_pred ecCCccceeeccCcch-HhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHH
Q 003942 206 VPNNKVGVLIGKAGDT-IRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIA 271 (784)
Q Consensus 206 VP~~~vG~IIGkgG~t-IK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~ 271 (784)
||-+..=++|-..-+| +-.|-..|||||.|..+ ...+|.++|-- -++|++++.++++
T Consensus 61 IPINs~FrcVqEAEEtLLIDIasntgcKIRvqgd-----~t~ErlfEIpD----ee~cl~fL~~v~~ 118 (124)
T 2kie_A 61 IPINSHFRCVQEAEETLLIDIASNSGCKIRVQGD-----WIRERRFEIPD----EEHCLKFLSAVLA 118 (124)
T ss_dssp EECSSSCEEEESSSSCSSCCGGGCSSEEEEEESS-----SCSCEEEEECC----HHHHHHHHHHHHH
T ss_pred eecccchhhhHhhhhheEEeccCCCCcEEEEecc-----cchhheeeCCC----HHHHHHHHHHHHH
Confidence 4544444444444443 34677889999999976 45689999954 4567777776654
No 143
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=28.29 E-value=7.6 Score=40.09 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=31.6
Q ss_pred EEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEec
Q 003942 203 KIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIG 254 (784)
Q Consensus 203 rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G 254 (784)
-|.|...++.++||+++..|+.|.+.+++.|.|-.+ -.|+|.+
T Consensus 158 v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~N---------G~IWi~~ 200 (251)
T 2je6_I 158 VIDIMPVKVPRVIGKNKSMYETLTSKSGCSIFVANN---------GRIWATC 200 (251)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHTTC---CEECTT---------SEEEC--
T ss_pred EEEECHHHhHHHhcCcchHHHHhcccCCeEEEEECC---------cEEEEeC
Confidence 457888899999999999999999999999988643 3667775
No 144
>4aqn_A Pesticin; toxin, bacteriocin, colicin, three domains, muramidase; 1.98A {Yersinia pestis} PDB: 4epf_A 4arm_B 4arl_A 4arm_A 4arq_B 4arp_A 4arq_A
Probab=28.24 E-value=9.9 Score=40.52 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=22.5
Q ss_pred CCCeEEEEEecCCccceeeccCcchH
Q 003942 197 DSTMSRKIEVPNNKVGVLIGKAGDTI 222 (784)
Q Consensus 197 ~~~~t~rI~VP~~~vG~IIGkgG~tI 222 (784)
-+.+..++.+|.+.-|.+||+.|-||
T Consensus 177 ye~~sr~~H~P~n~~G~viG~SGVTI 202 (357)
T 4aqn_A 177 FEGFNPTSHFPSNPSSDYFNSTGVTF 202 (357)
T ss_dssp TTCCEEEEECCCCTTSTTGGGCBCEE
T ss_pred cccCCcccccCCCCCCCccCCCcceE
Confidence 34577899999999999999988887
No 145
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}
Probab=28.03 E-value=17 Score=33.87 Aligned_cols=56 Identities=9% Similarity=0.038 Sum_probs=37.3
Q ss_pred EEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcC
Q 003942 297 QVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGD 352 (784)
Q Consensus 297 ~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt 352 (784)
.+.+.+-...+=.++.....+.+.|++...|.+.|..+.....+......|+|.|.
T Consensus 32 ~v~~~~~~~~~~~~~s~~~~~~~nl~~~prvsl~v~~~~~~~~~~~~~~rltl~G~ 87 (148)
T 3tgv_A 32 YAPFVQNQEGYFVLISHIARHARNLEVNPQVSIMMIEDETEAKQLFARKRLTFDAV 87 (148)
T ss_dssp EEEEEEETTEEEEEEETTSHHHHHHHHSCEEEEEEECCGGGCSCGGGCCEEEEEEE
T ss_pred EEEEEEECCEEEEEECCccHHHHHHHhCCCeEEEEecCcccccCcccceEEEEeee
Confidence 34455555656667789999999999999998887654321122223356888875
No 146
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=25.26 E-value=3e+02 Score=28.58 Aligned_cols=99 Identities=14% Similarity=0.113 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHhhhcCCCCcccccccchhhccCCccEEEEEecCCce-eeeecCCchHHHHHHHHhCCeEEecc-CC
Q 003942 258 NIDKAEKLINAVIAEADAGGSPSLVARGLATAQASGAAEQVEIKVPNEKV-GLIIGRGGETIKGLQTRSGARIQLIP-QH 335 (784)
Q Consensus 258 ~V~kA~~~I~elI~e~~~~g~p~~~~~g~~~~~~~~~~~~~~i~VP~~~v-G~VIGkgG~~IK~Iq~~SGarIqI~~-~~ 335 (784)
.+++...+|...|.|+...+ .+.. ... .....++.|-.+.- |.|= |-..+.+|-+..+|+|.... +.
T Consensus 12 ~~~~~~~~i~~~l~ED~~~g--D~Tt------~~~-~~~~~~a~~~ar~~pgv~a--G~~~~~~~f~~~~~~v~~~~~dG 80 (285)
T 1o4u_A 12 HMEKILDLLMSFVKEDEGKL--DLAS------FPL-RNTTAGAHLLLKTENVVAS--GIEVSRMFLEKMGLLSKFNVEDG 80 (285)
T ss_dssp -CHHHHHHHHHHHHHHHCSC--CTTT------GGG-TTCEEEEEEEECCSEEECC--SHHHHHHHHHHTTCEEEESCCTT
T ss_pred hhhhhHHHHHHHHHhcCCCC--Cccc------hhc-cCCeEEEEEEEcCCCeEEE--cHHHHHHHHHHcCCEEEEEcCCC
Confidence 35667778888888874321 1111 111 11223333323333 4333 45677888888888886432 22
Q ss_pred CCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 003942 336 LPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 369 (784)
Q Consensus 336 ~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~ 369 (784)
..-...+.+++|+|+...+..+.+.+..+|..
T Consensus 81 --~~v~~g~~v~~i~G~~~~ll~~Er~aLn~l~~ 112 (285)
T 1o4u_A 81 --EYLEGTGVIGEIEGNTYKLLVAERTLLNVLSV 112 (285)
T ss_dssp --CEEESCEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred --CCcCCCCEEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 11123567899999999999999998887753
No 147
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1
Probab=24.53 E-value=1.2e+02 Score=30.92 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=21.4
Q ss_pred CcEEEec--chhhHHHHHHHHHHHHHhh
Q 003942 248 RPVEIIG--TLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 248 R~V~I~G--~~e~V~kA~~~I~elI~e~ 273 (784)
..|+|+| +.+.+.+|++.|..+|.+.
T Consensus 210 GKIviTGaK~~~~~~~Ai~~i~p~L~~~ 237 (240)
T 1rm1_A 210 GKIVLTGAKQREEIYQAFEAIYPVLSEF 237 (240)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEecCCHHHHHHHHHHHHHHHHHh
Confidence 4667888 4679999999999998875
No 148
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.42 E-value=18 Score=36.57 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhcCCCCcccc-----c---ccchhhccCCccEEEEEecCCceeeeecCCchHHHHHHHH
Q 003942 264 KLINAVIAEADAGGSPSLVA-----R---GLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTR 324 (784)
Q Consensus 264 ~~I~elI~e~~~~g~p~~~~-----~---g~~~~~~~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~ 324 (784)
.+|.+.|++. +.. - ++....-......++|.|-...-|.||||+|+.|++|+.+
T Consensus 37 ~~IR~~i~~~-------l~~~~~~~a~~~gis~ieI~r~~~~i~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 37 QKIRDCIKNY-------VQKNTKTSSGVEGIARIEIQKRIDLIQVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp HHHHHHHHSC-------CSSSSCCTTTTTCEEEEEBCBSSSCBCCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred HHHHHHHHHH-------HhhhcccccccCccceEEEEEcCCeEEEEEEecCCCcEecCCcHHHHHHHHH
No 149
>3n79_A PDUT; FES cluster, BMC shell protein, carboxysome, electron T; 1.50A {Salmonella enterica subsp} PDB: 3vcd_A 4ddf_A 3pac_A
Probab=24.35 E-value=4.1e+02 Score=25.99 Aligned_cols=135 Identities=11% Similarity=0.071 Sum_probs=74.7
Q ss_pred hhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhhhcCCCCcccccccchh-hccCCccEEEEE
Q 003942 223 RYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEADAGGSPSLVARGLATA-QASGAAEQVEIK 301 (784)
Q Consensus 223 K~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~~~~g~p~~~~~g~~~~-~~~~~~~~~~i~ 301 (784)
..+-+.++++|...+.. ....-.+.|+|+...|+.|++...+.+.+... .-..+.+..... ... ....+.
T Consensus 21 D~a~Kaa~V~l~~~~~~----~~G~~~~ii~Gdv~aV~~Av~a~~~~~~~~vv--~s~VI~rph~el~~aL---~~~~~~ 91 (192)
T 3n79_A 21 DAMLKSANVDLLVSKTI----SPGKFLLMLGGDIGAIQQAIETGTSQAGEMLV--DSLVLANIHPSVLPAI---SGLNSV 91 (192)
T ss_dssp HHHHHHSSCEEEEEEEE----TTTEEEEEEEECHHHHHHHHHHHHHHHGGGEE--EEEEEEEECTTHHHHH---HSCCCC
T ss_pred HHHhccCCcEEEEEEee----cCceEEEEEEccHHHHHHHHHHHHHHhhceEE--EEEEeCCCCHHHHHHH---hccccC
Confidence 34455677777655421 22345788999999999999999888766210 000011100000 000 000011
Q ss_pred ecCCceeeeecCCc-hHHH---HHHHHhCCeEEeccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Q 003942 302 VPNEKVGLIIGRGG-ETIK---GLQTRSGARIQLIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLSQ 369 (784)
Q Consensus 302 VP~~~vG~VIGkgG-~~IK---~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~~ 369 (784)
...+.+|.|--++- ..|. ...+.+.++|...+.. .......+|.|+|+..+|+.|.+...+.+++
T Consensus 92 ~~~~AlGiie~~~~~~ai~AaD~a~KAA~V~lv~~~~~---~g~~g~~~~~i~GdvsaV~~Av~a~~~~~~~ 160 (192)
T 3n79_A 92 DKRQAVGIVETWSVAACISAADRAVKGSNVTLVRVHMA---FGIGGKCYMVVAGDVSDVNNAVTVASESAGE 160 (192)
T ss_dssp SCCSEEEEEEEESHHHHHHHHHHHHHTSSCEEEEEEES---SSTTSEEEEEEEECHHHHHHHHHHHHHHHHT
T ss_pred CCCceEEEEEecCHHHHHHHHHHHHhHCCcEEEEEEec---cccCCEEEEEEEECHHHHHHHHHHHHHHHHh
Confidence 23467777776552 2222 3344556665443211 1123457899999999999999998887764
No 150
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=23.51 E-value=50 Score=34.45 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=25.2
Q ss_pred EEEEecC-CccceeeccCcchHhhHH--------hhcCCEEEEc
Q 003942 202 RKIEVPN-NKVGVLIGKAGDTIRYLQ--------YNSGAKIQIT 236 (784)
Q Consensus 202 ~rI~VP~-~~vG~IIGkgG~tIK~Iq--------~~TGakI~V~ 236 (784)
..|.|.. +..+.||||+|++||+|. +-++++|.+.
T Consensus 232 ~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l~ 275 (301)
T 1wf3_A 232 AILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYLD 275 (301)
T ss_dssp EEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred EEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEEE
Confidence 3455554 367889999999998774 4567777664
No 151
>3oss_D Type 2 secretion system, secretin GSPD; general secretory pathway, HR domain, lanthanide-B TAG, protein transport; 2.63A {Escherichia coli}
Probab=23.22 E-value=4.9e+02 Score=24.91 Aligned_cols=113 Identities=15% Similarity=0.114 Sum_probs=0.0
Q ss_pred chHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEe----cchhhHHHHHHHHHHHHHhhhcCCCCcccccccchhhc----
Q 003942 220 DTIRYLQYNSGAKIQITRDADADPHAATRPVEII----GTLSNIDKAEKLINAVIAEADAGGSPSLVARGLATAQA---- 291 (784)
Q Consensus 220 ~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~----G~~e~V~kA~~~I~elI~e~~~~g~p~~~~~g~~~~~~---- 291 (784)
+.|+.|-+.+|..|.|..+- ...|+|. =+...+..++..|++ ..|+.-...
T Consensus 20 ~vl~~la~~~g~n~vv~~~V-------~G~vTl~s~~pl~~~~~~~~l~~vL~--------------~~Gl~~~~~~~~~ 78 (181)
T 3oss_D 20 SFIETVGANLNKTIIMGPGV-------QGKVSIRTMTPLNERQYYQLFLNLLE--------------AQGYAVVPMYIDT 78 (181)
T ss_dssp HHHHHHHHHHTCCEEECSCC-------CCEEEEEESSCEEHHHHHHHHHHHHH--------------HHTEEEEEEECCT
T ss_pred HHHHHHHHHHCCcEEECCCC-------ceEEEEEecCCCCHHHHHHHHHHHHH--------------HCCCEEEEeeccc
Q ss_pred -------------------------------------cCCccEEEEEecCCceeeeecCCchHHHHHHHHh-CCeEEecc
Q 003942 292 -------------------------------------SGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRS-GARIQLIP 333 (784)
Q Consensus 292 -------------------------------------~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~S-GarIqI~~ 333 (784)
.....+..|.+-.-.+..|. ..|+.|.... +.+|.+..
T Consensus 79 ~~~~y~~~~g~v~~V~p~~~a~~~~~~~~~~~~~~~~~~~l~t~v~~L~y~~A~el~----~~L~~lls~~~~g~v~~d~ 154 (181)
T 3oss_D 79 NNDGYIEGDELVLKVVKSSAAKVEPLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELA----PILRQMIDSAGSGNVVNYD 154 (181)
T ss_dssp TSSSCCCGGGEEEEEEEC------------------CTTCEEEEEEECSSSCGGGGH----HHHHHHHHHHCTTCEEEEE
T ss_pred ccccccccCCCEEEEEechhhhhcccccccccccccccCCcEEEEEEeecCCHHHHH----HHHHHhcCcccCceEEEeC
Q ss_pred CCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHH
Q 003942 334 QHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEV 366 (784)
Q Consensus 334 ~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~ 366 (784)
....|.|+|+.+.|++.+++|..+
T Consensus 155 ---------~tN~Liv~d~~~~i~~i~~lI~~l 178 (181)
T 3oss_D 155 ---------PSNVIMLTGRASVVERLTEVIQRV 178 (181)
T ss_dssp ---------TTTEEEEEEEHHHHHHHHHHHHHH
T ss_pred ---------CCCEEEEEeCHHHHHHHHHHHHHH
No 152
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=22.07 E-value=60 Score=31.51 Aligned_cols=45 Identities=11% Similarity=0.022 Sum_probs=37.0
Q ss_pred EEEEecCCceeeeecCCch-HHHHHHHHhCCeEEeccCCCCCCCCCCceEEEEEcC
Q 003942 298 VEIKVPNEKVGLIIGRGGE-TIKGLQTRSGARIQLIPQHLPEGDGSKERIVRVTGD 352 (784)
Q Consensus 298 ~~i~VP~~~vG~VIGkgG~-~IK~Iq~~SGarIqI~~~~~p~~~~~~er~V~I~Gt 352 (784)
+-|.|+..++.++|+|++. +|+.|.+.++|.|.|-. ...|-|.+.
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~----------NG~IWi~~~ 138 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGL----------NGKIWVKCE 138 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEET----------TTEEEEECS
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEEC----------CcEEEEecC
Confidence 4578999999999999888 89999999999999843 345667765
No 153
>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*
Probab=21.88 E-value=1.6e+02 Score=30.44 Aligned_cols=64 Identities=13% Similarity=0.150 Sum_probs=44.3
Q ss_pred CCeEEEEEecCC--ccceeeccCcchHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHh
Q 003942 198 STMSRKIEVPNN--KVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAE 272 (784)
Q Consensus 198 ~~~t~rI~VP~~--~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e 272 (784)
..+.++|+.|.. .. +.+..|+..+|-.+.....+. +++.....|+|..-||..++.++..+|..
T Consensus 180 ~~fc~KVl~py~p~v~--------e~l~~lq~~fgg~lVR~P~SR---nsThEMY~Vsg~~~niv~~v~~~s~~Ll~ 245 (267)
T 3p8z_A 180 NQFCIKVLNPYMPTVI--------EHLERLQRKHGGMLVRNPLSR---NSTHEMYWISNGTGNIVSSVNMVSRLLLN 245 (267)
T ss_dssp CEEEEEESCCCSHHHH--------HHHHHHHHHHCCEEECCTTSC---TTCCCEEEESSCCCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEccCCChhHH--------HHHHHHHHHhCCEeEeCCCCC---CCcceEEEEecCCCceehhHHHHHHHHHH
Confidence 467888888875 22 667888988885444433222 45556677788888999999888775544
No 154
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=21.76 E-value=4.2e+02 Score=27.10 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=39.2
Q ss_pred CchHHHHHHHHhCCeEE-eccCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHh
Q 003942 314 GGETIKGLQTRSGARIQ-LIPQHLPEGDGSKERIVRVTGDMRQIEIAQEMIKEVLS 368 (784)
Q Consensus 314 gG~~IK~Iq~~SGarIq-I~~~~~p~~~~~~er~V~I~Gt~~qV~~Ak~lI~~~L~ 368 (784)
|=+.+.++-+..+++|. ..++. ..-...+.+++|+|+...+..+.+.+..+|.
T Consensus 45 G~~~~~~~~~~~~~~v~~~~~eG--~~v~~g~~~~~v~G~~~~~l~~Er~~Ln~l~ 98 (273)
T 2b7n_A 45 GEKYALELLEMTGIECVQTIKDK--ERFKPKDALMEIRGDFSMLLKVERTLLNLLQ 98 (273)
T ss_dssp CHHHHHHHHHHTTCEEEEECCTT--CEECTTCEEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHCCcEEEEEcCCC--CCcCCCCEEEEEEecHHHHHHHHHHHHHHHH
Confidence 35677788888889885 43333 1113457899999999999999999888775
No 155
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=21.69 E-value=34 Score=33.86 Aligned_cols=92 Identities=14% Similarity=0.121 Sum_probs=49.7
Q ss_pred eecCchhchhhhhhhhhHhhhcCCCCCCCCCCCCCeEEEEEecCCccceeeccCcchHhhHHhhcCCEEEEccCCCCCCC
Q 003942 165 ETVKEEESVEPSNVVPQQVVDNSKSDDPSSTDDSTMSRKIEVPNNKVGVLIGKAGDTIRYLQYNSGAKIQITRDADADPH 244 (784)
Q Consensus 165 ~i~G~~e~Ve~A~~lI~~ii~~~~~~~~~~~~~~~~t~rI~VP~~~vG~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~ 244 (784)
.+.+....+++..+.+.++++-.............+..+|.+=.-.+ -+. -.-|.+|.+.++++|.=...
T Consensus 76 vV~g~e~~ieqL~kQL~KLidVikV~dl~~~~~~~v~REl~LiKV~~---~~~-r~ei~~i~~~fra~ivDv~~------ 145 (193)
T 2fgc_A 76 MVKGDDKTIEQIEKQAYKLVEVVKVTPIDPLPENRVEREMALIKVRF---DED-KQEIFQLVEIFRGKIIDVSR------ 145 (193)
T ss_dssp EEEECTTHHHHHHHHHTTSTTEEEEEECCSSGGGEEEEEEEEEEEEC---SSC-HHHHHHHHHHTTCEEEEECS------
T ss_pred EEECCHHHHHHHHHHhcCcCceEEEEEecCCCCccceeEEEEEEEeC---CcC-HHHHHHHHHHcCCEEEEEcC------
Confidence 45566667777666666655411111000000112333322221111 112 46788999999998854422
Q ss_pred CCCCcEEEecchhhHHHHHHHHH
Q 003942 245 AATRPVEIIGTLSNIDKAEKLIN 267 (784)
Q Consensus 245 s~eR~V~I~G~~e~V~kA~~~I~ 267 (784)
..-+|.++|+.+.|+.-++++.
T Consensus 146 -~s~~iE~tG~~~ki~a~i~~l~ 167 (193)
T 2fgc_A 146 -EGAIIEITGARSKVEAFINLLP 167 (193)
T ss_dssp -SEEEEEEEECHHHHHHHHHHSC
T ss_pred -CEEEEEEcCCHHHHHHHHHHhh
Confidence 2468999999998876666553
No 156
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical protein from thermus therm HB8, MAD; 1.70A {Thermus thermophilus} SCOP: d.58.50.1
Probab=21.42 E-value=1.1e+02 Score=27.15 Aligned_cols=71 Identities=14% Similarity=0.068 Sum_probs=45.1
Q ss_pred eEEEEEecCCccceeeccCc---chHhhHHhhcCCEEEEccCCCCCCCCCCCcEEEecchhhHHHHHHHHHHHHHhh
Q 003942 200 MSRKIEVPNNKVGVLIGKAG---DTIRYLQYNSGAKIQITRDADADPHAATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 200 ~t~rI~VP~~~vG~IIGkgG---~tIK~Iq~~TGakI~V~~~~~~~p~s~eR~V~I~G~~e~V~kA~~~I~elI~e~ 273 (784)
++++|.+| +..|=.|+. ..|.+||+++++.|-=....|.--...--++.|.++...++.-++.|.++|.+.
T Consensus 8 l~~~l~l~---~~SLKeKR~vvksl~~rlr~rFnVSvAEv~~qD~~q~a~igva~Vs~~~~~~~~~l~~v~~~ie~~ 81 (102)
T 1j27_A 8 YTARLETP---ARSLKEKRALIKPALERLKARFPVSAARLYGLDAWGYEVVGFTLLGNDPAWVEETMRAAARFLAEA 81 (102)
T ss_dssp EEEEEECC---CSSHHHHHHHHHHHHHHHHHHSSCEEEEEECTTCSSEEEEEEEEEESCHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEEEe---CCChHHhHHHHHHHHHHHhhcCCeEEEEecCccccceEEEEEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 46677776 444544443 456778888888886655432211111224566778888999888888888764
No 157
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=20.96 E-value=1.4e+02 Score=31.18 Aligned_cols=98 Identities=13% Similarity=0.042 Sum_probs=57.3
Q ss_pred hchhhhhhhhhHhhhcC----CCCCCCCCCCCCeEEEEEecCCcc-ceeeccCcchHhhHHhhcCCEEEEccCCCCCCCC
Q 003942 171 ESVEPSNVVPQQVVDNS----KSDDPSSTDDSTMSRKIEVPNNKV-GVLIGKAGDTIRYLQYNSGAKIQITRDADADPHA 245 (784)
Q Consensus 171 e~Ve~A~~lI~~ii~~~----~~~~~~~~~~~~~t~rI~VP~~~v-G~IIGkgG~tIK~Iq~~TGakI~V~~~~~~~p~s 245 (784)
..+++...+|...|.++ +++.... .+...+.+|..- .- |.|-| -..+.+|-+..+++|.+...+...-..
T Consensus 11 ~~~~~~~~~i~~~l~ED~~~gD~Tt~~~-~~~~~~a~~~ar--~~pgv~aG--~~~~~~~f~~~~~~v~~~~~dG~~v~~ 85 (285)
T 1o4u_A 11 HHMEKILDLLMSFVKEDEGKLDLASFPL-RNTTAGAHLLLK--TENVVASG--IEVSRMFLEKMGLLSKFNVEDGEYLEG 85 (285)
T ss_dssp --CHHHHHHHHHHHHHHHCSCCTTTGGG-TTCEEEEEEEEC--CSEEECCS--HHHHHHHHHHTTCEEEESCCTTCEEES
T ss_pred hhhhhhHHHHHHHHHhcCCCCCccchhc-cCCeEEEEEEEc--CCCeEEEc--HHHHHHHHHHcCCEEEEEcCCCCCcCC
Confidence 34566666666666533 2221111 222334444432 33 44444 366778888888888654332222223
Q ss_pred CCCcEEEecchhhHHHHHHHHHHHHHhh
Q 003942 246 ATRPVEIIGTLSNIDKAEKLINAVIAEA 273 (784)
Q Consensus 246 ~eR~V~I~G~~e~V~kA~~~I~elI~e~ 273 (784)
.+.+++|+|....+..+.+.++.+|...
T Consensus 86 g~~v~~i~G~~~~ll~~Er~aLn~l~~~ 113 (285)
T 1o4u_A 86 TGVIGEIEGNTYKLLVAERTLLNVLSVM 113 (285)
T ss_dssp CEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999998887654
No 158
>2iab_A Hypothetical protein; NP_828636.1, structural genomics, JOIN for structural genomics, JCSG; 2.00A {Streptomyces avermitilis}
Probab=20.62 E-value=1.3e+02 Score=27.68 Aligned_cols=81 Identities=12% Similarity=0.017 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCCccccc-ccchhhccCCccEEEEEecCCceeeeecCCchHHHHHHHHhCCeEEeccCCCC
Q 003942 259 IDKAEKLINAVIAEADAGGSPSLVAR-GLATAQASGAAEQVEIKVPNEKVGLIIGRGGETIKGLQTRSGARIQLIPQHLP 337 (784)
Q Consensus 259 V~kA~~~I~elI~e~~~~g~p~~~~~-g~~~~~~~~~~~~~~i~VP~~~vG~VIGkgG~~IK~Iq~~SGarIqI~~~~~p 337 (784)
...+.+.|.++|++....-+-.+... |.. ...-+-+.+-...+=+...+++.+++.|++...|.+.|...
T Consensus 10 ~~~~~~~~~~~L~~~~~~~LaT~~~d~G~P------~~~pv~~~~d~~~l~f~t~~~s~K~~~l~~np~Vsl~v~~~--- 80 (155)
T 2iab_A 10 AKQRIQDTLNRLELDVDAWVSTAGADGGAP------YLVPLSYLWDGETFLVATPAASPTGRNLSETGRVRLGIGPT--- 80 (155)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEEECTTSSCE------EEEEEECEECSSCEEEEEETTSHHHHHHHHHCEEEEEESST---
T ss_pred hHHhHHHHHHHHhCCCeEEEEEecCCCCCc------eEEEEEEEEECCEEEEEECCCCHHHHHHhhCCcEEEEEEcC---
Confidence 34556777777776532111100011 111 12233334445566677788899999999999999888531
Q ss_pred CCCCCCceEEEEEcCHH
Q 003942 338 EGDGSKERIVRVTGDMR 354 (784)
Q Consensus 338 ~~~~~~er~V~I~Gt~~ 354 (784)
.+.|+|.|+.+
T Consensus 81 ------~~~v~v~G~a~ 91 (155)
T 2iab_A 81 ------RDLVLVEGTAL 91 (155)
T ss_dssp ------TCEEEEEEEEE
T ss_pred ------CCEEEEEEEEE
Confidence 47788888844
No 159
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=20.61 E-value=71 Score=28.08 Aligned_cols=41 Identities=12% Similarity=0.055 Sum_probs=0.0
Q ss_pred HhhHHhhcCCEEEEccCCCCCCCCCCC---------cEEEecchhhHHHHHHHHHH
Q 003942 222 IRYLQYNSGAKIQITRDADADPHAATR---------PVEIIGTLSNIDKAEKLINA 268 (784)
Q Consensus 222 IK~Iq~~TGakI~V~~~~~~~p~s~eR---------~V~I~G~~e~V~kA~~~I~e 268 (784)
|.+|.+++++.|.|.. +.-++ +|.|.|+.+++++|++.|.+
T Consensus 38 Is~l~~~~~v~vnIL~------g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 87 (106)
T 3dhx_A 38 LSETARRFNVNNNIIS------AQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQE 87 (106)
T ss_dssp HHHHHHHSCCEEEEEE------EEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEEEE------EEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHH
Done!