Query 003943
Match_columns 784
No_of_seqs 403 out of 2161
Neff 6.3
Searched_HMMs 46136
Date Thu Mar 28 14:44:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003943.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/003943hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2039 Transcriptional coacti 100.0 9.1E-57 2E-61 537.4 28.4 638 11-773 4-658 (875)
2 KOG2039 Transcriptional coacti 99.9 2.1E-27 4.5E-32 285.4 13.1 514 8-587 317-864 (875)
3 smart00318 SNc Staphylococcal 99.9 1.1E-25 2.4E-30 216.2 17.0 125 617-742 2-137 (138)
4 smart00318 SNc Staphylococcal 99.9 6.3E-25 1.4E-29 210.9 18.6 131 11-150 2-137 (138)
5 PRK06518 hypothetical protein; 99.9 4.3E-25 9.3E-30 219.9 16.7 132 614-749 20-162 (177)
6 cd00175 SNc Staphylococcal nuc 99.9 2.8E-25 6.1E-30 210.7 14.7 118 624-743 1-129 (129)
7 PRK06518 hypothetical protein; 99.9 2E-24 4.3E-29 215.2 17.9 138 5-152 17-157 (177)
8 cd00175 SNc Staphylococcal nuc 99.9 2.9E-24 6.3E-29 203.8 16.5 123 18-150 1-128 (129)
9 COG1525 Micrococcal nuclease ( 99.8 1.4E-20 3.1E-25 191.1 14.8 121 618-744 42-172 (192)
10 PF00565 SNase: Staphylococcal 99.8 8.1E-21 1.8E-25 174.0 11.6 100 643-743 1-108 (108)
11 COG1525 Micrococcal nuclease ( 99.8 2.2E-20 4.7E-25 189.8 15.1 128 12-152 42-172 (192)
12 PF00565 SNase: Staphylococcal 99.8 2.1E-20 4.5E-25 171.3 10.5 107 42-151 1-108 (108)
13 COG2134 Cdh CDP-diacylglycerol 38.9 40 0.00087 35.0 4.2 65 24-95 64-136 (252)
14 PRK12442 translation initiatio 23.0 1.6E+02 0.0035 26.6 4.7 31 187-218 8-38 (87)
15 COG0361 InfA Translation initi 21.2 2.2E+02 0.0048 25.0 5.1 64 8-95 5-68 (75)
16 TIGR00008 infA translation ini 21.0 2E+02 0.0042 24.8 4.7 31 187-218 6-36 (68)
No 1
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=100.00 E-value=9.1e-57 Score=537.45 Aligned_cols=638 Identities=45% Similarity=0.718 Sum_probs=549.0
Q ss_pred eEEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCCC-CCCChhHHHHHHHHHhhcCCCeEEEEEccccC
Q 003943 11 WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRG-GLDEPFAWDSREFLRKLCIGKEVTFRVDYAVP 89 (784)
Q Consensus 11 ~~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~~-~~~ep~a~eAre~Lr~ll~Gk~V~v~~~~~~d 89 (784)
...|.|.+|.|||.+.++.. +..+++++..++|+.+.+|++.+++ +.++||+|++++|+|++++||.|.|..++...
T Consensus 4 ~~~~~v~~v~s~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~p~~~~~~~~~~~~~~~k~~~v~~~~~~~ 81 (875)
T KOG2039|consen 4 RLVGYVKAVLSGDAFVIRGS--PRAGPPPEFQINLSNVKAPNEARRDKGVDEPFAWESREFLRKSEIGKEVAVTRDQMSA 81 (875)
T ss_pred EEeeeEEEEeccCccEEEcc--cccCCCCCceEEEeecCCccccccCCCCCCCcChhhHHHHHHHhccceeeeEEeeecc
Confidence 45689999999999999984 4568889999999999999999874 34799999999999999999999999997456
Q ss_pred CCCceEEEEEeCCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCCCcCCCCCCcccccccCCCCCCC
Q 003943 90 NIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEASIRNLPPSAIG 169 (784)
Q Consensus 90 ~ygR~~g~V~l~g~nin~~LV~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~~~~~~~~~~r~i~~s~~~ 169 (784)
.++|.+|.+++++.++++.|+..||+.+.+... .+.+|...+...|.+|++.++|+|+. .....+++.++
T Consensus 82 ~~~~e~~~~~~~~~~~a~~lv~~g~~~~~~~~~---~~~~~~~~l~~~~~~~k~~~~g~w~~----~~~~~~~~~~~--- 151 (875)
T KOG2039|consen 82 NNGREVGFIYLGDENSAESLVKEGLLDVRDEGV---RNSSYFKTLDEVEVQAKQSGRGIWSK----LDHFIRNLKDS--- 151 (875)
T ss_pred ccccccceeecCcchhHHHHHhccCCccccccc---ccchhhhhhhhhhhhhhhhccccccc----cccceeecccc---
Confidence 679999999999899999999999999988764 33788899999999999999999993 33456888876
Q ss_pred CCchhhHHHHHhhhcCCcccEEEEEeccCC-EEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCcccccc
Q 003943 170 DSSNFNAMALLDANKGRPMQGIVEQARDGS-TLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEA 248 (784)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~iVe~V~dG~-t~rv~~~~~~~~i~v~l~GI~~P~~~~~~~~~~~~~~~~~~g~~~~~~~ 248 (784)
..++..|+..+.++++.|+||+|++|+ +.||++.+++..++++|+|+.||.+..+. ++
T Consensus 152 ---~~~p~~~~~~~~~~~~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s-----------~~------- 210 (875)
T KOG2039|consen 152 ---ALNPAELVDAVGGKPVNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPS-----------DG------- 210 (875)
T ss_pred ---ccccHHHHHhcCCceeeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCC-----------CC-------
Confidence 356788999988999999999999999 68888888888899999999999987532 11
Q ss_pred ccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCCeEEEEEeeecCCCCEEEEEEecCCCchhHHHHHHHhcCc
Q 003943 249 VAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGL 328 (784)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~epfg~EAk~f~~~~Ll~r~V~v~v~~~DkyGr~la~V~~~~g~~~~Dl~~eLL~~Gl 328 (784)
.+...+||+.+|+.|.+.++++|.|.|.+.+...+-.++|+|++++|+ +++.|+.+|+
T Consensus 211 ------------------~~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~~~~g~v~~~~~~----i~~~~~~~~~ 268 (875)
T KOG2039|consen 211 ------------------SPSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYVFFVGDVLYPDGN----IALELLSEGL 268 (875)
T ss_pred ------------------CCCCCCcHHHHHHHhcccchhhhceeeeeccccccccccccccccccc----eeeehhccch
Confidence 012458999999999999999999999999988877799999999984 9999999999
Q ss_pred eEEEecccccchHHHHHHHHHHHHHHHHhcccc-ccccCCCCCCccccccceeeEEEEEEEeCCEEEEEeCCCCCCCCcc
Q 003943 329 AKYIEWSANMMEEDAKRRLKAADLQAKKTRLRM-WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCIIVADDSIPYGNALA 407 (784)
Q Consensus 329 A~~~~~~~~~~~~~~~~~l~~AE~~Ak~~k~Gi-Wk~~~~~~~~~~~~~~k~~~g~V~~V~sGDti~v~~~~~~~~~~~~ 407 (784)
+++.+|+...++......++.+|..++..+..+ |+++..+....+++..+.+.+.|++++.+|++.+.... |.
T Consensus 269 ~k~v~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~e~~~~d~~~~~~~s---g~--- 342 (875)
T KOG2039|consen 269 AKCVDWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKVVEVLVSDCVLVALDS---GS--- 342 (875)
T ss_pred HHHHHhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeeccccccceeeeeeccCceEEecCC---CC---
Confidence 999999999887777677999999999999999 99999998888777778899999999999999999865 22
Q ss_pred eeEEEeecccCCCCCCCCCCCh--hhhhHHHHHHHHHhhcCCCEEEEEEeeeeeccccccccccCCCCCCCCCCCCCccc
Q 003943 408 ERRVNLSSIRCPKIGNPRKDEK--PAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKG 485 (784)
Q Consensus 408 e~~i~L~~i~~P~~~~~~~~~~--~~~~~~eare~lR~~ligk~v~v~vdy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (784)
+.++.+++|+.|+.+.+.+..+ .-|+..+|++|+|+++||++|.+.++|.++.. ..
T Consensus 343 ~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~----------------~~------ 400 (875)
T KOG2039|consen 343 ENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRR----------------EN------ 400 (875)
T ss_pred ceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeecccccc----------------cc------
Confidence 7889999999999444332223 47999999999999999999999999987631 00
Q ss_pred cccccCCCCCccccccccceeceeeEEecCCCCCCCCCchhhhhcccCCCCCCcchHHHHHhccceeEEecCC-ccccch
Q 003943 486 QAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRD-FEERSN 564 (784)
Q Consensus 486 ~~~~k~p~~~~~~~~~~~~~~~~~~v~l~~~~~~~~~~~~~~~~~~~~~~~~g~ni~~~Lv~~Gla~v~~~r~-~~~rs~ 564 (784)
+| -..|.+++. .|.|+++.++.+|++.+.+|++ ++.+++
T Consensus 401 -----~~-------------~~~c~~~~~----------------------~~~~~a~~~~~kg~~~~v~~~~~~~~~s~ 440 (875)
T KOG2039|consen 401 -----VP-------------TKVCALPLG----------------------GGKNVAELLVKKGLATVVRKRQDDEQRSS 440 (875)
T ss_pred -----cc-------------cccccccCC----------------------CcceeeEEEecccchhhhhhHhhhhhhcc
Confidence 00 022334431 3689999999999999999994 577799
Q ss_pred hHHHHHHHHHHHHHcCCCCCCCCCCCccceeeccccchhhhhhhchhhhcCCcccEEEEEEecCCEEEEEecCCcceEEE
Q 003943 565 YYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAF 644 (784)
Q Consensus 565 ~~~~L~~aE~~A~~~~~G~w~~~~~~~~~~~d~~~~~~~~ak~~l~~l~~~~~~~a~V~~V~DGdTl~v~~~~~~~~i~v 644 (784)
.||.|+.+|..|...++|||+.+..+.+.+.+++..-..++..|++++++...++++|+.+++|..++++++.+.+.+++
T Consensus 441 ~~d~ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~~ 520 (875)
T KOG2039|consen 441 HYDLLLVAEAIAIKGKKGCHSKKLDPTLRITDLTVDIVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQF 520 (875)
T ss_pred hhhhhhcchHHHHhhhhhhcccCCCcceeechhhhhhhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeEEE
Confidence 99999999999999999999998776778899876434445599999999999999999999999999999999999999
Q ss_pred EEeeecCCC-------CCchhHHHHHHHHHHHHcCCceeEEEeeecCCCcEEEEEEeC-CcchHHHHHHhCCeEEeeecC
Q 003943 645 SFSGVRCPG-------RNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES-RTNVAVILLEAGLAKLQTSFG 716 (784)
Q Consensus 645 rL~GIdaPe-------~~qpfg~eAk~~l~~~ll~r~V~v~~~~~DkyGr~lg~v~~~-~~di~~~Lv~~GlA~v~~~~~ 716 (784)
-+.|++||+ .++||+.+|..|...+++++++++.++.+|+.|+++|..|.+ +.++...++++||++.+ |.
T Consensus 521 ~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~~s~~~~e~~L~~~~--~~ 598 (875)
T KOG2039|consen 521 ALAGIDCPSGARNDVQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTNLSLKLLEQGLAPEH--FA 598 (875)
T ss_pred eeccccCcccccccccccCCccHHHHHHhhhheeccceEEEEeeeccCccccccccccccccchhhhhhhhcCccc--hh
Confidence 999999997 488999999999999999999999999999999999999998 88999999999999997 76
Q ss_pred CCCCCChHHHHHHHHHHH-HcccCCCCCCCCCccccCcc--cccccceeEeEEEEEEecc
Q 003943 717 SDRIPDSHLLEQAEKSAK-SQKLKIWENYVEGEEVSNGA--AVEGKQKEVLKVILILLHH 773 (784)
Q Consensus 717 ~~~~~~~~~l~~aE~~Ak-~~k~GlW~~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 773 (784)
.+.......|..+|..|+ ..+.++|.++.+...+.... ........+..+++++|..
T Consensus 599 ~e~~~~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p 658 (875)
T KOG2039|consen 599 AERSSEYPPLESAELPAKLEQKLKIWLNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITP 658 (875)
T ss_pred hhhhhhccchhhhhhccccchhcceeecccccchhhheecccccccccccceeeEeeecC
Confidence 666666678999999999 99999999998874432221 1124667889999999887
No 2
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=99.94 E-value=2.1e-27 Score=285.39 Aligned_cols=514 Identities=26% Similarity=0.306 Sum_probs=372.5
Q ss_pred CCceEEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCC-----CCCCCChhHHHHHHHHHhhcCCCeEEE
Q 003943 8 GGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLAR-----RGGLDEPFAWDSREFLRKLCIGKEVTF 82 (784)
Q Consensus 8 ~~~~~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~-----~~~~~ep~a~eAre~Lr~ll~Gk~V~v 82 (784)
....+.+.|..++++|++.+...+ | .+.++.+..|..|+.+. +. ..-||+.+|++||++..+|+.|.+
T Consensus 317 ~~~~~~~~v~e~~~~d~~~~~~~s----g--~~~~~~~~~i~~pr~~~~~~~~~p-~~~~~q~~a~~~~~~~~i~~~v~~ 389 (875)
T KOG2039|consen 317 DDKGFSGKVVEVLVSDCVLVALDS----G--SENKLFLSSIRLPRAGEPGRSLKP-YISPVQLVAREFLRKKLIGKRVIL 389 (875)
T ss_pred ccccccceeeeeeccCceEEecCC----C--CceEEEeeeccCccccccccccCC-ccccHHHHhhhhhhhhccCceeeE
Confidence 445667789999999999999873 3 36789999999999221 11 358999999999999999999999
Q ss_pred EEccccCCCCc---eEEEEEeC-CccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCCCcCCCCCCccc
Q 003943 83 RVDYAVPNIGR---EFGTVILG-DKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAAEA 158 (784)
Q Consensus 83 ~~~~~~d~ygR---~~g~V~l~-g~nin~~LV~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~~~~~~~~ 158 (784)
.+++.++.+.+ ..|.+++. |.++++.++..|++.+.++.......+..++.|+.+|..|...+.|+|+.+.... .
T Consensus 390 ~~~~~~~~~~~~~~~~c~~~~~~~~~~a~~~~~kg~~~~v~~~~~~~~~s~~~d~ll~~E~~~~~~~~~~~s~~~~~~-~ 468 (875)
T KOG2039|consen 390 QMDVIRPRRENVPTKVCALPLGGGKNVAELLVKKGLATVVRKRQDDEQRSSHYDLLLVAEAIAIKGKKGCHSKKLDPT-L 468 (875)
T ss_pred eeecccccccccccccccccCCCcceeeEEEecccchhhhhhHhhhhhhcchhhhhhcchHHHHhhhhhhcccCCCcc-e
Confidence 99987763312 56777774 5999999999999999887644344566779999999999999999999886621 1
Q ss_pred ccccCCCCCCCCCchhhHHHHHhh-hcCCcccEEEEEeccCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCccc
Q 003943 159 SIRNLPPSAIGDSSNFNAMALLDA-NKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTE 237 (784)
Q Consensus 159 ~~r~i~~s~~~~~~~~~~~~~~~~-~~~~~~~~iVe~V~dG~t~rv~~~~~~~~i~v~l~GI~~P~~~~~~~~~~~~~~~ 237 (784)
.++.+.-. ...+...|+.. .++..+.++|+.+++|+.+++++++....+++.++|++||+..++.
T Consensus 469 ~~~~~~~~-----i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~~~~~g~~~~~~~r~~--------- 534 (875)
T KOG2039|consen 469 RITDLTVD-----IVRNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQFALAGIDCPSGARND--------- 534 (875)
T ss_pred eechhhhh-----hhcCcEEeehhhccccceeeeeeeeeccccceeccCCcceeEEEeeccccCccccccc---------
Confidence 22333222 12344455553 5788999999999999999999998899999999999999976621
Q ss_pred ccCCCccccccccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCCeEEEEEeeecCCCCEEEEEEecCCCchh
Q 003943 238 ETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAK 317 (784)
Q Consensus 238 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~epfg~EAk~f~~~~Ll~r~V~v~v~~~DkyGr~la~V~~~~g~~~~ 317 (784)
....+||+.+|..|+..+++++++.|.+..+|+.|++++..+...+.+
T Consensus 535 ------------------------------~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~-- 582 (875)
T KOG2039|consen 535 ------------------------------VQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTN-- 582 (875)
T ss_pred ------------------------------ccccCCccHHHHHHhhhheeccceEEEEeeeccCcccccccccccccc--
Confidence 235789999999999999999999999999999999999998865665
Q ss_pred HHHHHHHhcCceEEEecccccchHHHHHHHHHHHHHHH-HhccccccccCCCCCCcc----c---cccceeeEEEEEEEe
Q 003943 318 DLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAK-KTRLRMWTNYVPPQSNSK----A---IHDQNFTGKVVEVVS 389 (784)
Q Consensus 318 Dl~~eLL~~GlA~~~~~~~~~~~~~~~~~l~~AE~~Ak-~~k~GiWk~~~~~~~~~~----~---~~~k~~~g~V~~V~s 389 (784)
+...++..||+.++ +...... .+..|..++..|+ ..+.++|.++..+..... . ........+|..+..
T Consensus 583 -~s~~~~e~~L~~~~-~~~e~~~--~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p 658 (875)
T KOG2039|consen 583 -LSLKLLEQGLAPEH-FAAERSS--EYPPLESAELPAKLEQKLKIWLNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITP 658 (875)
T ss_pred -chhhhhhhhcCccc-hhhhhhh--hccchhhhhhccccchhcceeecccccchhhheecccccccccccceeeEeeecC
Confidence 99999999999998 4434222 2358899999999 999999999988743211 0 112233566677777
Q ss_pred CCEEEEEeCCCC-CCCCcceeEEEeecccCCCCC--CCCCCChhhhhHHHHHHHHHhhcCC--C--E-EEEEEeeeeecc
Q 003943 390 GDCIIVADDSIP-YGNALAERRVNLSSIRCPKIG--NPRKDEKPAAYAREAREFLRTRLIG--R--Q-VNVQMEYSRKVV 461 (784)
Q Consensus 390 GDti~v~~~~~~-~~~~~~e~~i~L~~i~~P~~~--~~~~~~~~~~~~~eare~lR~~lig--k--~-v~v~vdy~~~~~ 461 (784)
+-.|+++..+.+ ....+....-.|..-.+|..+ .|++|..|.+-...++.|+|+++.. . . ..+++||++.+.
T Consensus 659 ~~~F~~q~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~gd~c~A~y~~D~qwyRa~i~~V~~~~~~~V~yiDygn~E~ 738 (875)
T KOG2039|consen 659 GKGFYVQSISDGSKITKIMTNLSQLVELKPPSSGSYTPKRGDLCVAKYSLDGQWYRALIVEVLDPESMEVFYIDYGNIET 738 (875)
T ss_pred CCcceeecccchHHHHHHHHHHHHHhhhcccccCCCCCCCCCeeeeeeccccceeeeeeeeeccCcceeEEEEecCcccc
Confidence 688888886531 111111111123333444444 4667777877777899999999954 3 2 356799999999
Q ss_pred ccccccccCCCCCCCCCCCCCccccccccCCCCCccccccccceeceeeEEecCCCC------CCCCCchhhhhcccCCC
Q 003943 462 VEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIK------GEGDDASAVAQSNAAGQ 535 (784)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~p~~~~~~~~~~~~~~~~~~v~l~~~~~------~~~~~~~~~~~~~~~~~ 535 (784)
++|.+++|+|++++..+++++.|+|++||.|. ++++.+..- +.|-..+++.++. .....-. .++. -.
T Consensus 739 lp~~~l~~lp~~~~~~p~~a~~~~L~~ik~~~-~~~~~e~~i--~~l~~~~~~~~~~~~~~~~i~~~~~~-~~l~---~~ 811 (875)
T KOG2039|consen 739 LPFVRLKPLPPHFSLLPPVAQECGLAGIKEPQ-LEDLKEEAI--RYLDEDTLGHKCQVNVELRVVGNSLL-VTLL---YT 811 (875)
T ss_pred cccccccCCChHHhcCchHHhhhhhhcccCCc-ccchHHHHH--HHHHHHhhcccceeeeeeeeecccee-EEEe---ee
Confidence 99999999999999999999999999999997 333322111 1110111111000 0000000 0000 01
Q ss_pred CCCcchHHHHHh-ccceeEEecCC-ccccchhHHHHHHHHHHHHHcCCCCCCCC
Q 003943 536 PAGVNVAELVVS-RGLGNVINHRD-FEERSNYYDALLAAEARAKAGKKGCYSSK 587 (784)
Q Consensus 536 ~~g~ni~~~Lv~-~Gla~v~~~r~-~~~rs~~~~~L~~aE~~A~~~~~G~w~~~ 587 (784)
-+..++++.|+. .|+..+ .++. .+.--..-++|..+|+.|+..++++|--.
T Consensus 812 ~~~~d~~~~l~~~~~l~~~-~~~~~~~~~q~~~~~~~~~qq~a~~~~~~~~~y~ 864 (875)
T KOG2039|consen 812 VEELDVGEELVAVEGLSLV-EQRKTEEVLQALLDQLEKAQQEARKEHLNIWFYG 864 (875)
T ss_pred cCcCChhHhhhhhcccccc-cccccchHHHHHhhHhhhchhhHHhhhhhhhhhc
Confidence 146789999999 999886 4443 22225677889999999999999999743
No 3
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.94 E-value=1.1e-25 Score=216.18 Aligned_cols=125 Identities=33% Similarity=0.537 Sum_probs=109.4
Q ss_pred cccEEEEEEecCCEEEEEecCCcceEEEEEeeecCCCCC----------chhHHHHHHHHHHHHcCCceeEEEeeecCCC
Q 003943 617 RIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRN----------ERYSNEALLLMRQKILQRDVEIEVETVDRTG 686 (784)
Q Consensus 617 ~~~a~V~~V~DGdTl~v~~~~~~~~i~vrL~GIdaPe~~----------qpfg~eAk~~l~~~ll~r~V~v~~~~~DkyG 686 (784)
.+.|+|++|+|||||+|.++. +..++|||+||||||.. ||||.+|++||++++++++|+|.+.+.|+||
T Consensus 2 ~~~~~V~~V~DGDT~~v~~~~-~~~~~vrL~gIdaPe~~~~~~~~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~~D~~g 80 (138)
T smart00318 2 EIRGVVERVLDGDTIRVRLPK-NKLITIRLSGIDAPETARPNKGDGTTDEPFGEEAKEFLKKLLLGKKVQVEVDSKDRYG 80 (138)
T ss_pred ceeEEEEEEecCCEEEEEeCC-CCEEEEEEEeccCCccCCCCCCCccccCcHHHHHHHHHHHHhCCCEEEEEEeccCCCC
Confidence 457999999999999998654 46799999999999964 8999999999999999999999999999999
Q ss_pred cEEEEEEeC-CcchHHHHHHhCCeEEeeecCCCCCCChHHHHHHHHHHHHcccCCCC
Q 003943 687 TFLGSLWES-RTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWE 742 (784)
Q Consensus 687 r~lg~v~~~-~~di~~~Lv~~GlA~v~~~~~~~~~~~~~~l~~aE~~Ak~~k~GlW~ 742 (784)
|++|+||++ +.|||++||++|||+++..+..........|.+||++||++|+|||+
T Consensus 81 r~~a~v~~~~~~~l~~~Lv~~G~A~~~~~~~~~~~~~~~~l~~ae~~Ar~~~~GlW~ 137 (138)
T smart00318 81 RFLGTVYLNGGNNIAEELVKEGLAKVYRYADKDEYRVYDELLEAEEAAKKARKGLWS 137 (138)
T ss_pred CEEEEEEECCCCcHHHHHHhcCCEEEEEecCccccHhHHHHHHHHHHHHHhCcCCCC
Confidence 999999996 56799999999999998544322211146899999999999999997
No 4
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.93 E-value=6.3e-25 Score=210.90 Aligned_cols=131 Identities=39% Similarity=0.519 Sum_probs=113.5
Q ss_pred eEEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCCCCC----CChhHHHHHHHHHhhcCCCeEEEEEcc
Q 003943 11 WYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGL----DEPFAWDSREFLRKLCIGKEVTFRVDY 86 (784)
Q Consensus 11 ~~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~~~~----~ep~a~eAre~Lr~ll~Gk~V~v~~~~ 86 (784)
.+.|+|++|+|||||.|...+ + ...+|||+||||||..+.+.. .+|||.+|++||++++.|+.|.|.++.
T Consensus 2 ~~~~~V~~V~DGDT~~v~~~~----~--~~~~vrL~gIdaPe~~~~~~~~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~ 75 (138)
T smart00318 2 EIRGVVERVLDGDTIRVRLPK----N--KLITIRLSGIDAPETARPNKGDGTTDEPFGEEAKEFLKKLLLGKKVQVEVDS 75 (138)
T ss_pred ceeEEEEEEecCCEEEEEeCC----C--CEEEEEEEeccCCccCCCCCCCccccCcHHHHHHHHHHHHhCCCEEEEEEec
Confidence 468999999999999999762 2 468999999999999865433 699999999999999999999999884
Q ss_pred ccCCCCceEEEEEe-CCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCCCcC
Q 003943 87 AVPNIGREFGTVIL-GDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS 150 (784)
Q Consensus 87 ~~d~ygR~~g~V~l-~g~nin~~LV~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs 150 (784)
.|+|||.+|+||+ +|.|||++||++|||+++..+.. .....+++|.+||++||++++|||+
T Consensus 76 -~D~~gr~~a~v~~~~~~~l~~~Lv~~G~A~~~~~~~~--~~~~~~~~l~~ae~~Ar~~~~GlW~ 137 (138)
T smart00318 76 -KDRYGRFLGTVYLNGGNNIAEELVKEGLAKVYRYADK--DEYRVYDELLEAEEAAKKARKGLWS 137 (138)
T ss_pred -cCCCCCEEEEEEECCCCcHHHHHHhcCCEEEEEecCc--cccHhHHHHHHHHHHHHHhCcCCCC
Confidence 7999999999999 57789999999999999987641 1122267899999999999999997
No 5
>PRK06518 hypothetical protein; Provisional
Probab=99.93 E-value=4.3e-25 Score=219.89 Aligned_cols=132 Identities=15% Similarity=0.155 Sum_probs=112.7
Q ss_pred cCCcccEEEEEEecCCEEEEEecC--CcceEEEEEeeecCCCCCc---------hhHHHHHHHHHHHHcCCceeEEEeee
Q 003943 614 RSRRIPAVVEYVLSGHRFKVLIPK--ETCSIAFSFSGVRCPGRNE---------RYSNEALLLMRQKILQRDVEIEVETV 682 (784)
Q Consensus 614 ~~~~~~a~V~~V~DGdTl~v~~~~--~~~~i~vrL~GIdaPe~~q---------pfg~eAk~~l~~~ll~r~V~v~~~~~ 682 (784)
....+.|+| .|+|||||+|.... .+..++|||+||||||..| |||.+|+++|+.++.++.|+|...+
T Consensus 20 ~~~~~~G~v-~V~DGDTl~l~~~~~~~~~~~~VRL~GIDAPE~~Q~c~~~~~~wp~G~~A~~~L~~li~gk~V~~~~~~- 97 (177)
T PRK06518 20 NVVIFHGRA-QVTSGVTFKLIADGWRKEITRDIRLYGVDTCAPRQKARLGDQEWPCGAVATAWLVTKTLNKWLSCRQAR- 97 (177)
T ss_pred ccccccceE-EEEcCCEEEEeeccccCCCCeEEEEEEEcCCCCCCcccCCCCCCcHHHHHHHHHHHHHCCCeEEEEEec-
Confidence 456778988 79999999995321 1236899999999999877 8999999999999999999999877
Q ss_pred cCCCcEEEEEEeCCcchHHHHHHhCCeEEeeecCCCCCCChHHHHHHHHHHHHcccCCCCCCCCCcc
Q 003943 683 DRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEE 749 (784)
Q Consensus 683 DkyGr~lg~v~~~~~di~~~Lv~~GlA~v~~~~~~~~~~~~~~l~~aE~~Ak~~k~GlW~~~~p~~~ 749 (784)
|+|||++|+||+++.|||++||++||||+|..|.. ......|..+|++||++|+|||+.....|.
T Consensus 98 D~ygR~lA~~~~~g~dln~~mV~~G~A~ay~~~~~--~~~~~~y~~aE~~AR~~k~GLW~~~~~~Pw 162 (177)
T PRK06518 98 MENGVHYAQCFVDGVDIAALGLAEGMAVLSKDDHE--DPGPAQYASLEEKARKAYRGLWSSTFQMPW 162 (177)
T ss_pred ccCCCEEEEEEECCEEHHHHHHhCCCEEEEeeccC--CCCHHHHHHHHHHHHHhCCCCCCCCCCCHH
Confidence 99999999999999999999999999999976642 334567999999999999999996544443
No 6
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.93 E-value=2.8e-25 Score=210.74 Aligned_cols=118 Identities=27% Similarity=0.490 Sum_probs=106.2
Q ss_pred EEecCCEEEEEecCCcceEEEEEeeecCCCC----------CchhHHHHHHHHHHHHcCCceeEEEeeecCCCcEEEEEE
Q 003943 624 YVLSGHRFKVLIPKETCSIAFSFSGVRCPGR----------NERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLW 693 (784)
Q Consensus 624 ~V~DGdTl~v~~~~~~~~i~vrL~GIdaPe~----------~qpfg~eAk~~l~~~ll~r~V~v~~~~~DkyGr~lg~v~ 693 (784)
+|+|||||+|..++ +..++|||+||||||. .+|||.+|++||++++++++|+|.+.+.|+|||++|+||
T Consensus 1 rV~dGDt~~v~~~~-~~~~~vrL~gId~Pe~~~~~~~~~~~~~~~g~~A~~~l~~~l~~~~V~i~~~~~d~~gr~la~v~ 79 (129)
T cd00175 1 RVIDGDTIRVRLPP-GPLITVRLSGIDAPETARPNKGKSETDEPFGEEAKEFLKKLLLGKKVQVEVDSKDRYGRTLGTVY 79 (129)
T ss_pred CeecCcEEEEEeCC-CCEEEEEEEeecCccccCCccCCCCCCCchHHHHHHHHHHHhCCCEEEEEEccCCCCCCEEEEEE
Confidence 58999999998764 4789999999999996 689999999999999999999999999999999999999
Q ss_pred eCC-cchHHHHHHhCCeEEeeecCCCCCCChHHHHHHHHHHHHcccCCCCC
Q 003943 694 ESR-TNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWEN 743 (784)
Q Consensus 694 ~~~-~di~~~Lv~~GlA~v~~~~~~~~~~~~~~l~~aE~~Ak~~k~GlW~~ 743 (784)
+++ .|||++||++|||+++..+.. ...+...|.+||++||++|+|||+.
T Consensus 80 ~~~~~~v~~~Lv~~G~A~~~~~~~~-~~~~~~~l~~ae~~Ak~~k~GiW~~ 129 (129)
T cd00175 80 LNGGENIAEELVKEGLARVYRYYPD-DSEYYDELLEAEEAAKKARKGLWSD 129 (129)
T ss_pred eCCCCcHHHHHHhcCCEEEEEECCC-CcHHHHHHHHHHHHHHHhCcCCCCC
Confidence 998 999999999999999854432 2356678999999999999999973
No 7
>PRK06518 hypothetical protein; Provisional
Probab=99.92 E-value=2e-24 Score=215.17 Aligned_cols=138 Identities=20% Similarity=0.232 Sum_probs=115.2
Q ss_pred CCCCCceEEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCC---CCCCChhHHHHHHHHHhhcCCCeEE
Q 003943 5 AAAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR---GGLDEPFAWDSREFLRKLCIGKEVT 81 (784)
Q Consensus 5 a~~~~~~~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~---~~~~ep~a~eAre~Lr~ll~Gk~V~ 81 (784)
|......+.|+| +|+|||||.|...+ . .....++|||+||||||+... ++..+|||.+|++||+.++.|+.|.
T Consensus 17 ~~~~~~~~~G~v-~V~DGDTl~l~~~~-~--~~~~~~~VRL~GIDAPE~~Q~c~~~~~~wp~G~~A~~~L~~li~gk~V~ 92 (177)
T PRK06518 17 ASNNVVIFHGRA-QVTSGVTFKLIADG-W--RKEITRDIRLYGVDTCAPRQKARLGDQEWPCGAVATAWLVTKTLNKWLS 92 (177)
T ss_pred cccccccccceE-EEEcCCEEEEeecc-c--cCCCCeEEEEEEEcCCCCCCcccCCCCCCcHHHHHHHHHHHHHCCCeEE
Confidence 556677788998 79999999997531 0 001247999999999998753 3467899999999999999999999
Q ss_pred EEEccccCCCCceEEEEEeCCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCCCcCCC
Q 003943 82 FRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKV 152 (784)
Q Consensus 82 v~~~~~~d~ygR~~g~V~l~g~nin~~LV~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~~ 152 (784)
|.... |+|||.+|+||++|.+||++||++|||+++..+. +..+...|..+|++||++++|||+.+
T Consensus 93 ~~~~~--D~ygR~lA~~~~~g~dln~~mV~~G~A~ay~~~~----~~~~~~~y~~aE~~AR~~k~GLW~~~ 157 (177)
T PRK06518 93 CRQAR--MENGVHYAQCFVDGVDIAALGLAEGMAVLSKDDH----EDPGPAQYASLEEKARKAYRGLWSST 157 (177)
T ss_pred EEEec--ccCCCEEEEEEECCEEHHHHHHhCCCEEEEeecc----CCCCHHHHHHHHHHHHHhCCCCCCCC
Confidence 99653 8999999999999999999999999999998764 12334679999999999999999954
No 8
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.92 E-value=2.9e-24 Score=203.83 Aligned_cols=123 Identities=40% Similarity=0.560 Sum_probs=110.0
Q ss_pred EecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCC----CCCCChhHHHHHHHHHhhcCCCeEEEEEccccCCCCc
Q 003943 18 AVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR----GGLDEPFAWDSREFLRKLCIGKEVTFRVDYAVPNIGR 93 (784)
Q Consensus 18 ~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~----~~~~ep~a~eAre~Lr~ll~Gk~V~v~~~~~~d~ygR 93 (784)
+|+|||||.|.... + ...+|||+||||||+.+. ....+|||.+|++||++++.|+.|+|.++. .|+|||
T Consensus 1 rV~dGDt~~v~~~~----~--~~~~vrL~gId~Pe~~~~~~~~~~~~~~~g~~A~~~l~~~l~~~~V~i~~~~-~d~~gr 73 (129)
T cd00175 1 RVIDGDTIRVRLPP----G--PLITVRLSGIDAPETARPNKGKSETDEPFGEEAKEFLKKLLLGKKVQVEVDS-KDRYGR 73 (129)
T ss_pred CeecCcEEEEEeCC----C--CEEEEEEEeecCccccCCccCCCCCCCchHHHHHHHHHHHhCCCEEEEEEcc-CCCCCC
Confidence 58999999999863 2 578999999999999765 356899999999999999999999999884 789999
Q ss_pred eEEEEEeCC-ccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCCCcC
Q 003943 94 EFGTVILGD-KNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWS 150 (784)
Q Consensus 94 ~~g~V~l~g-~nin~~LV~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs 150 (784)
.+|+||+++ .+||++||++|||+++..+. ..+.+..+|.+||++||++++|||+
T Consensus 74 ~la~v~~~~~~~v~~~Lv~~G~A~~~~~~~---~~~~~~~~l~~ae~~Ak~~k~GiW~ 128 (129)
T cd00175 74 TLGTVYLNGGENIAEELVKEGLARVYRYYP---DDSEYYDELLEAEEAAKKARKGLWS 128 (129)
T ss_pred EEEEEEeCCCCcHHHHHHhcCCEEEEEECC---CCcHHHHHHHHHHHHHHHhCcCCCC
Confidence 999999976 99999999999999998774 2256889999999999999999997
No 9
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.84 E-value=1.4e-20 Score=191.12 Aligned_cols=121 Identities=25% Similarity=0.375 Sum_probs=109.9
Q ss_pred ccEEEEEEecCCEEEEEecCCcceEEEEEeeecCCCCC--------chhHHHHHHHHHHHHcC-CceeEEEee-ecCCCc
Q 003943 618 IPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRN--------ERYSNEALLLMRQKILQ-RDVEIEVET-VDRTGT 687 (784)
Q Consensus 618 ~~a~V~~V~DGdTl~v~~~~~~~~i~vrL~GIdaPe~~--------qpfg~eAk~~l~~~ll~-r~V~v~~~~-~DkyGr 687 (784)
..+.|.+|.|||||.+... .+..++|||+|||+||.. +|||.+|++||++++.+ +.|++.+.+ .|+|||
T Consensus 42 ~~~~v~~v~dGDT~~v~~~-~~~~~~iRl~gIdaPe~~~~~~~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~~~d~y~R 120 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGE-GGQAVKIRLAGIDAPETKQTCAGGKSQPCGEEAREFLRNLLLGRRTVECDLADRKDRYGR 120 (192)
T ss_pred CCCceEEecCCCeEEEecC-CCceeEEEEeccCCCcccccCCcccccchHHHHHHHHHHHhcCCceEEEecCCcccCCCc
Confidence 4678999999999999754 357899999999999975 89999999999999996 889999888 999999
Q ss_pred EEEEEEeCCcchHHHHHHhCCeEEeeecCCCCCCChHHHHHHHHHHHHcccCCCCCC
Q 003943 688 FLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENY 744 (784)
Q Consensus 688 ~lg~v~~~~~di~~~Lv~~GlA~v~~~~~~~~~~~~~~l~~aE~~Ak~~k~GlW~~~ 744 (784)
++|+|+.+++|||.+||++|||++|. ...+...|.+||+.||++++|||+..
T Consensus 121 ~la~v~~~~~~v~~~lV~~G~A~~~~-----~~~~~~~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 121 LLAYVTVDGTDVNLELVKEGLARVYY-----NSEYGGEYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred EEEEEEECCEEHHHHHHhCCCEEEec-----cccchHHHHHHHHHHHHcccCccCCC
Confidence 99999999999999999999999973 34556789999999999999999986
No 10
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.84 E-value=8.1e-21 Score=173.96 Aligned_cols=100 Identities=31% Similarity=0.509 Sum_probs=89.0
Q ss_pred EEEEeeecCCCCC------chhHHHHHHHHHHHHcCCceeEEEeee--cCCCcEEEEEEeCCcchHHHHHHhCCeEEeee
Q 003943 643 AFSFSGVRCPGRN------ERYSNEALLLMRQKILQRDVEIEVETV--DRTGTFLGSLWESRTNVAVILLEAGLAKLQTS 714 (784)
Q Consensus 643 ~vrL~GIdaPe~~------qpfg~eAk~~l~~~ll~r~V~v~~~~~--DkyGr~lg~v~~~~~di~~~Lv~~GlA~v~~~ 714 (784)
+|||+||||||.. +|||.+|++|+++++++++|.+.+.+. |+|||++|+||+++.+||.+||++|||+++..
T Consensus 1 ~vrL~gI~~Pe~~~~~~~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~d~~gr~~~~v~~~~~~in~~Ll~~GlA~v~~~ 80 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPDKPEEPYGQEAKEFLRELLLGRQVVVEVDDIKQDKYGRLLAYVYVDGEDINEELLEEGLARVYRR 80 (108)
T ss_dssp EEEETTEE-SSSTCCCTTTSTTHHHHHHHHHHHHHTCSCEEEEEESSBSTTSCEEEEEEETTEEHHHHHHHTTSSEE-CG
T ss_pred CEEEEEEECCCCCCCCCccchHHHHHHHHHHHHhCCCeeeecccccCCCCCCceeEEEEEechhhhHHHHhCCeEEEEEe
Confidence 6999999999976 899999999999999999999999987 99999999999999999999999999999854
Q ss_pred cCCCCCCChHHHHHHHHHHHHcccCCCCC
Q 003943 715 FGSDRIPDSHLLEQAEKSAKSQKLKIWEN 743 (784)
Q Consensus 715 ~~~~~~~~~~~l~~aE~~Ak~~k~GlW~~ 743 (784)
+.. ...+...|..||++||++|+|||++
T Consensus 81 ~~~-~~~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 81 YPS-NSEYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp BTT-BCTTHHHHHHHHHHHHHTT-GGGCT
T ss_pred cCC-CcHHHHHHHHHHHHHHHhCcCCCCC
Confidence 432 4567789999999999999999985
No 11
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.84 E-value=2.2e-20 Score=189.78 Aligned_cols=128 Identities=30% Similarity=0.452 Sum_probs=112.7
Q ss_pred EEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCC--CCCCChhHHHHHHHHHhhcCC-CeEEEEEcccc
Q 003943 12 YRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARR--GGLDEPFAWDSREFLRKLCIG-KEVTFRVDYAV 88 (784)
Q Consensus 12 ~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~--~~~~ep~a~eAre~Lr~ll~G-k~V~v~~~~~~ 88 (784)
..+.|.+|+|||||.+.... + ...+|||.||||||..+. ++..+|||.+|++||++++.+ +.|.|......
T Consensus 42 ~~~~v~~v~dGDT~~v~~~~----~--~~~~iRl~gIdaPe~~~~~~~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~~~ 115 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGEG----G--QAVKIRLAGIDAPETKQTCAGGKSQPCGEEAREFLRNLLLGRRTVECDLADRK 115 (192)
T ss_pred CCCceEEecCCCeEEEecCC----C--ceeEEEEeccCCCcccccCCcccccchHHHHHHHHHHHhcCCceEEEecCCcc
Confidence 34789999999999999873 2 578999999999999865 456899999999999999997 88888876326
Q ss_pred CCCCceEEEEEeCCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCCCcCCC
Q 003943 89 PNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKV 152 (784)
Q Consensus 89 d~ygR~~g~V~l~g~nin~~LV~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~~ 152 (784)
|+|||.+|+||.+|.+||.+||++|||+++. . ..+..+|.++|+.||++++|||+..
T Consensus 116 d~y~R~la~v~~~~~~v~~~lV~~G~A~~~~-~------~~~~~~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 116 DRYGRLLAYVTVDGTDVNLELVKEGLARVYY-N------SEYGGEYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred cCCCcEEEEEEECCEEHHHHHHhCCCEEEec-c------ccchHHHHHHHHHHHHcccCccCCC
Confidence 9999999999999999999999999999988 1 2356789999999999999999995
No 12
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.83 E-value=2.1e-20 Score=171.28 Aligned_cols=107 Identities=29% Similarity=0.497 Sum_probs=94.7
Q ss_pred EEEEEeccCCCCCCCCCCCChhHHHHHHHHHhhcCCCeEEEEEccc-cCCCCceEEEEEeCCccHHHHHHhcCCEEEEEc
Q 003943 42 TLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYA-VPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQ 120 (784)
Q Consensus 42 ~VrLagIdAPe~~~~~~~~ep~a~eAre~Lr~ll~Gk~V~v~~~~~-~d~ygR~~g~V~l~g~nin~~LV~~GlA~v~~~ 120 (784)
+|||+|||||+..+.+...+|||.+|++||++++.++.|.+.+... .|.+||.+|+||+++.+||+.||++|||+++..
T Consensus 1 ~vrL~gI~~Pe~~~~~~~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~d~~gr~~~~v~~~~~~in~~Ll~~GlA~v~~~ 80 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPDKPEEPYGQEAKEFLRELLLGRQVVVEVDDIKQDKYGRLLAYVYVDGEDINEELLEEGLARVYRR 80 (108)
T ss_dssp EEEETTEE-SSSTCCCTTTSTTHHHHHHHHHHHHHTCSCEEEEEESSBSTTSCEEEEEEETTEEHHHHHHHTTSSEE-CG
T ss_pred CEEEEEEECCCCCCCCCccchHHHHHHHHHHHHhCCCeeeecccccCCCCCCceeEEEEEechhhhHHHHhCCeEEEEEe
Confidence 6999999999998877789999999999999999999999988754 689999999999999999999999999999886
Q ss_pred cCcCCCCchhHHHHHHHHHHHHHhCCCCcCC
Q 003943 121 GSQKGEASPFLAELLRLEEQAKLQGLGRWSK 151 (784)
Q Consensus 121 ~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~ 151 (784)
.. ....++..|..||++||++++|||++
T Consensus 81 ~~---~~~~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 81 YP---SNSEYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp BT---TBCTTHHHHHHHHHHHHHTT-GGGCT
T ss_pred cC---CCcHHHHHHHHHHHHHHHhCcCCCCC
Confidence 53 24578899999999999999999984
No 13
>COG2134 Cdh CDP-diacylglycerol pyrophosphatase [Lipid metabolism]
Probab=38.87 E-value=40 Score=34.95 Aligned_cols=65 Identities=23% Similarity=0.401 Sum_probs=44.0
Q ss_pred EEEEeeCCCCCCCCCc---eeEEEEEeccCCCCCCCCCCCChh-HHHHHHHHHhhcC----CCeEEEEEccccCCCCceE
Q 003943 24 SLVITALSNPNPGPPR---EKTLTLSSIITPRLARRGGLDEPF-AWDSREFLRKLCI----GKEVTFRVDYAVPNIGREF 95 (784)
Q Consensus 24 Ti~v~~~~~~~~g~~~---~~~VrLagIdAPe~~~~~~~~ep~-a~eAre~Lr~ll~----Gk~V~v~~~~~~d~ygR~~ 95 (784)
+.++++. .||-+ .-+.|+.||..|-+-...++.--| +|+||.|..+++. ...|.+.+. .++||.-
T Consensus 64 ~av~Kd~----~gPlQyLLmPt~rItGiEsP~L~e~atpNyf~~AWqAR~fms~kyg~~ipd~dvsLaIN---s~~gRtQ 136 (252)
T COG2134 64 YAVLKDR----NGPLQYLLMPTARITGIESPLLLEPATPNYFYLAWQARDFMSKKYGNPIPDSDVSLAIN---SKNGRTQ 136 (252)
T ss_pred eEEEecc----CCCceeEeeeeecccCCcChhhcCCCCccHHHHHHHHHHHHHHHhCCCCCccceEEEec---CccCccc
Confidence 5556655 25422 237899999999997655444333 9999999999884 356777765 4567663
No 14
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=23.03 E-value=1.6e+02 Score=26.56 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=22.7
Q ss_pred cccEEEEEeccCCEEEEEEcCCceEEEEEEee
Q 003943 187 PMQGIVEQARDGSTLRVYLLPEFQFVQVFVAG 218 (784)
Q Consensus 187 ~~~~iVe~V~dG~t~rv~~~~~~~~i~v~l~G 218 (784)
.+.|+|+.++.++.|+|.|.. +..+.-.++|
T Consensus 8 e~~G~V~e~Lp~~~frV~Len-G~~vla~isG 38 (87)
T PRK12442 8 ELDGIVDEVLPDSRFRVTLEN-GVEVGAYASG 38 (87)
T ss_pred EEEEEEEEECCCCEEEEEeCC-CCEEEEEecc
Confidence 467999999999999999864 4444444433
No 15
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=21.20 E-value=2.2e+02 Score=24.98 Aligned_cols=64 Identities=13% Similarity=0.067 Sum_probs=43.3
Q ss_pred CCceEEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCCCCCCChhHHHHHHHHHhhcCCCeEEEEEccc
Q 003943 8 GGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCIGKEVTFRVDYA 87 (784)
Q Consensus 8 ~~~~~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~~~~~ep~a~eAre~Lr~ll~Gk~V~v~~~~~ 87 (784)
....+.|+|++++-++.+.|...+ | .+|++.|.- ++.. .+ -.++.|..|.|+.-.-
T Consensus 5 d~~e~~g~V~e~L~~~~f~v~~ed----g-----~~~~ahI~G-Kmr~-------------~~-i~I~~GD~V~Ve~~~~ 60 (75)
T COG0361 5 DEIEMEGTVIEMLPNGRFRVELEN----G-----HERLAHISG-KMRK-------------NR-IRILPGDVVLVELSPY 60 (75)
T ss_pred cccEEEEEEEEecCCCEEEEEecC----C-----cEEEEEccC-cchh-------------ee-EEeCCCCEEEEEeccc
Confidence 567789999999999999999874 3 678888832 2210 01 1245799999987533
Q ss_pred cCCCCceE
Q 003943 88 VPNIGREF 95 (784)
Q Consensus 88 ~d~ygR~~ 95 (784)
.+..||..
T Consensus 61 d~~kg~I~ 68 (75)
T COG0361 61 DLTKGRIV 68 (75)
T ss_pred ccccccEE
Confidence 33446654
No 16
>TIGR00008 infA translation initiation factor IF-1. This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).
Probab=21.04 E-value=2e+02 Score=24.81 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=22.7
Q ss_pred cccEEEEEeccCCEEEEEEcCCceEEEEEEee
Q 003943 187 PMQGIVEQARDGSTLRVYLLPEFQFVQVFVAG 218 (784)
Q Consensus 187 ~~~~iVe~V~dG~t~rv~~~~~~~~i~v~l~G 218 (784)
.+.|+|..+..++.|+|.+... ..+.-++.|
T Consensus 6 e~~G~V~e~L~~~~f~V~l~ng-~~vla~i~G 36 (68)
T TIGR00008 6 EMEGKVTESLPNAMFRVELENG-HEVLAHISG 36 (68)
T ss_pred EEEEEEEEECCCCEEEEEECCC-CEEEEEecC
Confidence 4679999999999999998753 444444433
Done!