Query 003943
Match_columns 784
No_of_seqs 403 out of 2161
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 09:03:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/003943.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/003943hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bdl_A Staphylococcal nuclease 100.0 1E-63 3.5E-68 581.6 29.5 503 7-579 20-570 (570)
2 3bdl_A Staphylococcal nuclease 100.0 5.3E-56 1.8E-60 516.8 37.5 337 377-779 22-380 (570)
3 4eqp_A Thermonuclease; staphyl 100.0 1.5E-28 5E-33 236.9 15.0 129 616-747 8-140 (143)
4 4eqp_A Thermonuclease; staphyl 99.9 1.3E-27 4.4E-32 230.3 14.2 133 6-154 4-139 (143)
5 2wac_A CG7008-PA; unknown func 99.6 2.1E-15 7.3E-20 153.9 13.3 125 617-744 68-217 (218)
6 2wac_A CG7008-PA; unknown func 99.5 4.7E-14 1.6E-18 143.9 15.3 133 8-152 65-217 (218)
7 2hqx_A P100 CO-activator tudor 99.4 1E-13 3.4E-18 144.6 4.3 131 617-749 81-237 (246)
8 2hqx_A P100 CO-activator tudor 99.3 9.1E-13 3.1E-17 137.4 4.7 135 8-153 78-233 (246)
9 4b9w_A TDRD1, tudor domain-con 96.3 0.02 7E-07 57.3 11.2 99 8-116 79-198 (201)
10 4b9x_A TDRD1, tudor domain-con 96.2 0.027 9.1E-07 57.5 11.7 100 8-117 79-199 (226)
11 4b9x_A TDRD1, tudor domain-con 96.2 0.019 6.5E-07 58.6 10.5 119 185-332 80-200 (226)
12 4b9w_A TDRD1, tudor domain-con 95.9 0.026 9E-07 56.5 9.5 117 185-330 80-198 (201)
13 2diq_A Tudor and KH domain-con 92.7 0.0061 2.1E-07 55.3 -3.5 72 423-494 32-108 (110)
14 3ntk_A Maternal protein tudor; 92.6 0.58 2E-05 45.4 10.2 89 7-109 60-166 (169)
15 3ntk_A Maternal protein tudor; 90.8 0.75 2.6E-05 44.6 8.8 82 618-703 65-166 (169)
16 3fdr_A Tudor and KH domain-con 82.8 0.055 1.9E-06 47.4 -4.2 62 423-484 27-93 (94)
17 1g5v_A SurviVal motor neuron p 75.5 0.12 4.2E-06 45.0 -4.2 56 424-479 11-72 (88)
18 4a4f_A SurviVal of motor neuro 63.3 0.4 1.4E-05 39.1 -3.5 50 423-472 8-63 (64)
19 2d9t_A Tudor domain-containing 61.7 0.58 2E-05 39.7 -2.9 55 424-478 10-70 (78)
20 3pnw_C Tudor domain-containing 50.2 0.55 1.9E-05 39.8 -4.9 50 424-473 18-73 (77)
21 2eqk_A Tudor domain-containing 45.2 0.4 1.4E-05 41.4 -6.5 56 419-474 17-77 (85)
22 3kdf_A Replication protein A 1 21.9 1.1E+02 0.0036 27.9 5.0 40 177-217 14-56 (121)
23 2equ_A PHD finger protein 20-l 21.5 5.8 0.0002 33.3 -3.3 52 421-474 7-63 (74)
No 1
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=100.00 E-value=1e-63 Score=581.60 Aligned_cols=503 Identities=27% Similarity=0.329 Sum_probs=371.3
Q ss_pred CCCceEEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCCCC----------CCChhHHHHHHHHHhhcC
Q 003943 7 AGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGG----------LDEPFAWDSREFLRKLCI 76 (784)
Q Consensus 7 ~~~~~~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~~~----------~~ep~a~eAre~Lr~ll~ 76 (784)
+....+.|+|++|+|||||+|...+ | ++++|||+||||||+.++++ .++|||++||+|||++|+
T Consensus 20 ~~~~~~~~~V~~V~DGDTi~v~~~~----g--~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~ 93 (570)
T 3bdl_A 20 HMDKQFVAKVMQVLNADAIVVKLNS----G--DYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLI 93 (570)
T ss_dssp -CCSEEEEEEEEEETTTEEEEECTT----S--CEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHT
T ss_pred cCCcEEEEEEEEEccCCEEEEECCC----C--CEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhC
Confidence 3567889999999999999998642 3 57899999999999965432 479999999999999999
Q ss_pred CCeEEEEEcc---------ccCCCC-ceEEEEEeCCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCC
Q 003943 77 GKEVTFRVDY---------AVPNIG-REFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGL 146 (784)
Q Consensus 77 Gk~V~v~~~~---------~~d~yg-R~~g~V~l~g~nin~~LV~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~ 146 (784)
||+|+|.+++ .+|+|| |.+|+||++|.|||++||++|||+++++.....+++.++++|.+||++||++++
T Consensus 94 gk~V~~~~~~~~~~~~~~~~~D~yg~R~la~v~~~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~ 173 (570)
T 3bdl_A 94 GKKVNVTVDYIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGK 173 (570)
T ss_dssp TCEEEEEEEEEESSCCCSSCSSSSCCEEEEEEEETTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEeeccccccccccCCCCceEEEEEccCCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCC
Confidence 9999999997 468999 999999999999999999999999987531112356678999999999999999
Q ss_pred CCcCCCCCCcccccccCCCCCCCCCchhhHHHHHhh-hcCCcccEEEEEeccCCEEEEEEcCCceEEEEEEeeecCCCCC
Q 003943 147 GRWSKVPGAAEASIRNLPPSAIGDSSNFNAMALLDA-NKGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVA 225 (784)
Q Consensus 147 GiWs~~~~~~~~~~r~i~~s~~~~~~~~~~~~~~~~-~~~~~~~~iVe~V~dG~t~rv~~~~~~~~i~v~l~GI~~P~~~ 225 (784)
|||+.++.++. .++++.++ ..++++|++. +++++++|+|++|+|||||+|+++++++.++|||+||||||+.
T Consensus 174 GlW~~~~~~~~-~~~d~~~~------~~~~~~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~ 246 (570)
T 3bdl_A 174 GLHSKKEVPIH-RVADISGD------TQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGA 246 (570)
T ss_dssp GGGCCSCCCCC-CCEECTTC------HHHHHHHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCC
T ss_pred CCCCCCCCCcc-eeeecCCc------hHHHHHHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCC
Confidence 99998654322 24565543 4688999984 5799999999999999999999988899999999999999986
Q ss_pred CCCCccccCcccccCCCccccccccchhhHHHHhhhcccCCCCCCCchhHHHHHHHHHHHccCCeEEEEEeeecCCCCEE
Q 003943 226 RRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLI 305 (784)
Q Consensus 226 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~epfg~EAk~f~~~~Ll~r~V~v~v~~~DkyGr~l 305 (784)
+.. .+ + ..+.+|||.||++|++++|++|+|+|.+.+.|+|||++
T Consensus 247 ~~~-----------~~--------------------~-----~~~~~~~g~eA~~~l~~~l~~r~V~~~~~~~D~ygR~l 290 (570)
T 3bdl_A 247 RNL-----------PG--------------------L-----VQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFI 290 (570)
T ss_dssp EEE-----------TT--------------------E-----EECCCTTHHHHHHHHHHHHTTCEEEEEEEEECTTSCEE
T ss_pred CCC-----------CC--------------------C-----ccccChHHHHHHHHHHHHhcCCeEEEEEEeEcCCCCEE
Confidence 521 00 0 12478999999999999999999999999999999999
Q ss_pred EEEEecCCCchhHHHHHHHhcCceEEEecccccchHHHHHHHHHHHHHHHHhccccccccCCCCCC-------ccccccc
Q 003943 306 GSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSN-------SKAIHDQ 378 (784)
Q Consensus 306 a~V~~~~g~~~~Dl~~eLL~~GlA~~~~~~~~~~~~~~~~~l~~AE~~Ak~~k~GiWk~~~~~~~~-------~~~~~~k 378 (784)
|+||++ |. ||+++||++|||+++ +...... +...|++||++||++++|||+.+.++... .......
T Consensus 291 a~v~~~-~~---~v~~~Lv~~GlA~~~-~~~~~~~--~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~~~~~~~~~ 363 (570)
T 3bdl_A 291 GWLHID-GA---NLSVLLVEHALSKVH-FTAERSS--YYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSAS 363 (570)
T ss_dssp EEEEET-TE---EHHHHHHHTTSSEEC-GGGTTST--THHHHHHHHHHHHHHTCGGGC----------CCCCCCSSCCCC
T ss_pred EEEEEC-CE---EHHHHHHHcCCcEEE-ecCCCcc--hHHHHHHHHHHHHHhCCCCCcccccccchhcccccccCCCCCc
Confidence 999996 44 499999999999998 3322222 23589999999999999999998775211 0112245
Q ss_pred eeeEEEEEEEeCCEEEEEeCCCCCCCCcceeEE----EeecccCCC--CCCCCCCChhhhhHHHHHHHHHhhcCC----C
Q 003943 379 NFTGKVVEVVSGDCIIVADDSIPYGNALAERRV----NLSSIRCPK--IGNPRKDEKPAAYAREAREFLRTRLIG----R 448 (784)
Q Consensus 379 ~~~g~V~~V~sGDti~v~~~~~~~~~~~~e~~i----~L~~i~~P~--~~~~~~~~~~~~~~~eare~lR~~lig----k 448 (784)
.+.+.|+.|.+...|+|+..+... ..++..- .+++. +|. ...|+.|..|.+... +..|+|.+++. .
T Consensus 364 ~~~V~Vt~V~sp~~Fyvq~~~~~~--~l~~l~~~l~~~~~~~-~~l~~~~~~~~G~~c~a~~~-d~~wyRa~I~~v~~~~ 439 (570)
T 3bdl_A 364 YKPVFVTEITDDLHFYVQDVETGT--QLEKLMENMRNDIASH-PPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKVESPA 439 (570)
T ss_dssp CEEEEEEEECTTSEEEEEEGGGHH--HHHHHHHHHHHHHHHS-CCCTTCCCCCTTCEEEEECT-TSCEEEEEEEEEEETT
T ss_pred EEEEEEEEEECCCeEEEEECCcHH--HHHHHHHHHHHHHhcC-CCCCCCcCCCcCCEEEEEEC-CCCEEEEEEEEEcCCC
Confidence 678999999999999999854210 0000000 11111 121 124566777776555 78899999974 4
Q ss_pred EEEE-EEeeeeeccccccccccCCCCCCCC--CCCCCccccccccCCCCCcccc----ccccc---eeceeeEEecCCCC
Q 003943 449 QVNV-QMEYSRKVVVEAAPVAAGAKGPAGT--KGPAGTKGQAAAKGPAGEESVG----ATETR---IIDFGSIFLLSPIK 518 (784)
Q Consensus 449 ~v~v-~vdy~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~p~~~~~~~----~~~~~---~~~~~~v~l~~~~~ 518 (784)
.+.| +|||++...+..+.++|+++.|... +.++-.|.|+.++.|...+-.. -+.+. ..-.+.|.--
T Consensus 440 ~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~La~v~pp~~~~w~~ea~~~f~~lv~~k~l~~~V~~~---- 515 (570)
T 3bdl_A 440 KIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHL---- 515 (570)
T ss_dssp EEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEETTEECCSSHHHHHHHHHHHHHHHTTEEEEEEEEEC----
T ss_pred eEEEEEEeCCCeEEEEHHHCccCCHHHhcCCCCcceEEEEECCeEcCCCCCCcHHHHHHHHHHhCCCEEEEEEEEE----
Confidence 5544 6999999999999999999999976 9999999999999887322111 11110 0112222211
Q ss_pred CCCCCchhhhhcccCCCCCCcchHHHHHhccceeEEecCCccccchhHHHHHHHHHHHHHc
Q 003943 519 GEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAG 579 (784)
Q Consensus 519 ~~~~~~~~~~~~~~~~~~~g~ni~~~Lv~~Gla~v~~~r~~~~rs~~~~~L~~aE~~A~~~ 579 (784)
. +++..+++.. ..++.+||+.||++|||.+.+.+ ...-...+++|+++|+.||++
T Consensus 516 -~-~~~~~V~L~~---~~~~~sIn~~Lv~~G~A~~~~~~-~~~~~~~~~~l~~~q~~Ak~~ 570 (570)
T 3bdl_A 516 -S-AGCPHVTLQF---ADSKGDVGLGLVKEGLVMVEVRK-EKQFQKVITEYLNAQESAKSA 570 (570)
T ss_dssp -C-SSSCEEEEEE---TTTCCBHHHHHHHTTSSEECCCC-SGGGHHHHHHHHHHHHTC---
T ss_pred -e-CCcEEEEEEE---CCCCccHHHHHHHCCCeEcchhh-hhhHHHHHHHHHHHHHHHhcC
Confidence 0 1122222221 12468999999999999975332 111256889999999999863
No 2
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=100.00 E-value=5.3e-56 Score=516.80 Aligned_cols=337 Identities=39% Similarity=0.606 Sum_probs=279.3
Q ss_pred cceeeEEEEEEEeCCEEEEEeCCCCCCCCcceeEEEeecccCCCCC-CCCCC-------ChhhhhHHHHHHHHHhhcCCC
Q 003943 377 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIG-NPRKD-------EKPAAYAREAREFLRTRLIGR 448 (784)
Q Consensus 377 ~k~~~g~V~~V~sGDti~v~~~~~~~~~~~~e~~i~L~~i~~P~~~-~~~~~-------~~~~~~~~eare~lR~~ligk 448 (784)
.+.+.|+|++|+|||||.|...++ ++++|+|++|+||++. +++++ ..++||++||+||||++|+||
T Consensus 22 ~~~~~~~V~~V~DGDTi~v~~~~g------~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~gk 95 (570)
T 3bdl_A 22 DKQFVAKVMQVLNADAIVVKLNSG------DYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGK 95 (570)
T ss_dssp CSEEEEEEEEEETTTEEEEECTTS------CEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHTTC
T ss_pred CcEEEEEEEEEccCCEEEEECCCC------CEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhCCC
Confidence 468999999999999999986332 4899999999999985 22211 157999999999999999999
Q ss_pred EEEEEEeeeeeccccccccccCCCCCCCCCCCCCccccccccCCCCCccccccccce-eceeeEEecCCCCCCCCCchhh
Q 003943 449 QVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRI-IDFGSIFLLSPIKGEGDDASAV 527 (784)
Q Consensus 449 ~v~v~vdy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~p~~~~~~~~~~~~~-~~~~~v~l~~~~~~~~~~~~~~ 527 (784)
+|.|++||.++.... + ...+. .. |.+|+||+
T Consensus 96 ~V~~~~~~~~~~~~~-----~-----~~~D~------------------------yg~R~la~v~~-------------- 127 (570)
T 3bdl_A 96 KVNVTVDYIRPASPA-----T-----ETVPA------------------------FSERTCATVTI-------------- 127 (570)
T ss_dssp EEEEEEEEEESSCCC-----S-----SCSSS------------------------SCCEEEEEEEE--------------
T ss_pred EEEEEEEeecccccc-----c-----cccCC------------------------CCceEEEEEcc--------------
Confidence 999999998652100 0 00011 12 77899999
Q ss_pred hhcccCCCCCCcchHHHHHhccceeEEecC-CccccchhHHHHHHHHHHHHHcCCCCCCCCCCCccceeeccccchhhhh
Q 003943 528 AQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKAR 606 (784)
Q Consensus 528 ~~~~~~~~~~g~ni~~~Lv~~Gla~v~~~r-~~~~rs~~~~~L~~aE~~A~~~~~G~w~~~~~~~~~~~d~~~~~~~~ak 606 (784)
+|.|||+.||++|||.+++|+ .+++++.+|++|++||++|+++++|||+.+++++.+++|++. +..+++
T Consensus 128 ---------~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~GlW~~~~~~~~~~~d~~~-~~~~~~ 197 (570)
T 3bdl_A 128 ---------GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISG-DTQKAK 197 (570)
T ss_dssp ---------TTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTCGGGCCSCCCCCCCEECTT-CHHHHH
T ss_pred ---------CCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCCCCCCCCCCCcceeeecCC-chHHHH
Confidence 578999999999999999887 445678899999999999999999999998888889999974 789999
Q ss_pred hhchhhhcCCcccEEEEEEecCCEEEEEecCCcceEEEEEeeecCCCC----------CchhHHHHHHHHHHHHcCCcee
Q 003943 607 DFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGR----------NERYSNEALLLMRQKILQRDVE 676 (784)
Q Consensus 607 ~~l~~l~~~~~~~a~V~~V~DGdTl~v~~~~~~~~i~vrL~GIdaPe~----------~qpfg~eAk~~l~~~ll~r~V~ 676 (784)
+|++++++++.+.|+|++|+|||||+|++++++..++|||+||||||. .||||.+|++||+++|++|+|+
T Consensus 198 ~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA~~~l~~~l~~r~V~ 277 (570)
T 3bdl_A 198 QFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVE 277 (570)
T ss_dssp HHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCCEEETTEEECCCTTHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCCCCCCCCccccChHHHHHHHHHHHHhcCCeEE
Confidence 999999999999999999999999999988889999999999999983 6899999999999999999999
Q ss_pred EEEeeecCCCcEEEEEEeCCcchHHHHHHhCCeEEeeecCCCCCCChHHHHHHHHHHHHcccCCCCCCCCCccccCc--c
Q 003943 677 IEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNG--A 754 (784)
Q Consensus 677 v~~~~~DkyGr~lg~v~~~~~di~~~Lv~~GlA~v~~~~~~~~~~~~~~l~~aE~~Ak~~k~GlW~~~~p~~~~~~~--~ 754 (784)
|++.+.|+|||++|+||++|.|||++||++||||+| |...+..+...|.+||++||++|+|||+.+.|.+.+... .
T Consensus 278 ~~~~~~D~ygR~la~v~~~~~~v~~~Lv~~GlA~~~--~~~~~~~~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~ 355 (570)
T 3bdl_A 278 VEVESMDKAGNFIGWLHIDGANLSVLLVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVL 355 (570)
T ss_dssp EEEEEECTTSCEEEEEEETTEEHHHHHHHTTSSEEC--GGGTTSTTHHHHHHHHHHHHHHTCGGGC----------CCCC
T ss_pred EEEEeEcCCCCEEEEEEECCEEHHHHHHHcCCcEEE--ecCCCcchHHHHHHHHHHHHHhCCCCCcccccccchhccccc
Confidence 999999999999999999999999999999999997 555566777889999999999999999999886432111 1
Q ss_pred cccccceeEeEEEEEEeccccccee
Q 003943 755 AVEGKQKEVLKVILILLHHVLSSSC 779 (784)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (784)
.......++++|.||+|.+...--|
T Consensus 356 ~~~~~~~~~~~V~Vt~V~sp~~Fyv 380 (570)
T 3bdl_A 356 EEKERSASYKPVFVTEITDDLHFYV 380 (570)
T ss_dssp CCSSCCCCCEEEEEEEECTTSEEEE
T ss_pred ccCCCCCcEEEEEEEEEECCCeEEE
Confidence 1122446889999999987654444
No 3
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=99.96 E-value=1.5e-28 Score=236.86 Aligned_cols=129 Identities=26% Similarity=0.406 Sum_probs=111.8
Q ss_pred CcccEEEEEEecCCEEEEEecCCcceEEEEEeeecCCCCCchhHHHHHHHHHHHHc-CCceeEEEe---eecCCCcEEEE
Q 003943 616 RRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPGRNERYSNEALLLMRQKIL-QRDVEIEVE---TVDRTGTFLGS 691 (784)
Q Consensus 616 ~~~~a~V~~V~DGdTl~v~~~~~~~~i~vrL~GIdaPe~~qpfg~eAk~~l~~~ll-~r~V~v~~~---~~DkyGr~lg~ 691 (784)
...+|+|++|+|||||+|.. .+..++|||+||||||..||||.+|++||+++|. +++|+|+++ +.|+|||++|+
T Consensus 8 ~~~~~~V~~V~DGDTi~v~~--~g~~~~VRL~gIDaPE~~q~~g~~A~~~l~~ll~~g~~V~~~~d~~~~~D~ygR~la~ 85 (143)
T 4eqp_A 8 HKEPATLIKAIDGDTVKLMY--KGQPMTFRLLLVDTPEFNEKYGPEASAFTKKMVENAKKDEVEFDKGQRTDKYGRGLAY 85 (143)
T ss_dssp CEEEEEEEEECSSSEEEEEE--TTEEEEEEETTEECCCTTSTTHHHHHHHHHHHHHHCSCEEEECCSSCSBCTTSCEEEE
T ss_pred ceeeEEEEEEECCCEEEEEe--CCcEEEEEEEeecCCCcCCchHHHHHHHHHHHHhcCCeEEEEEccccccCCCCCEEEE
Confidence 45579999999999999975 4668999999999999999999999999999998 699999984 68999999999
Q ss_pred EEeCCcchHHHHHHhCCeEEeeecCCCCCCChHHHHHHHHHHHHcccCCCCCCCCC
Q 003943 692 LWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEG 747 (784)
Q Consensus 692 v~~~~~di~~~Lv~~GlA~v~~~~~~~~~~~~~~l~~aE~~Ak~~k~GlW~~~~p~ 747 (784)
||++|.|||++||++||||++..|.. +..+...|.+||++||++|+|||+..+|+
T Consensus 86 v~~~g~~vn~~lv~~GlA~v~~~~~~-~~~~~~~~~~aE~~Ar~~k~GlW~~~~p~ 140 (143)
T 4eqp_A 86 IYADGKMVNEALVRQGLAKVAYVYKG-NNTHEQLLRKAEAQAKKEKLNIWSEDNAD 140 (143)
T ss_dssp EEETTEEHHHHHHHTTSSEECCCCTT-SCTTHHHHHHHHHHHHHTTCGGGC-----
T ss_pred EEECCchHHHHHHHCCCeEEEeecCC-CcchHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 99999999999999999999644543 34567789999999999999999988864
No 4
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=99.95 E-value=1.3e-27 Score=230.31 Aligned_cols=133 Identities=23% Similarity=0.239 Sum_probs=112.4
Q ss_pred CCCCceEEEEEeEecCCCEEEEeeCCCCCCCCCceeEEEEEeccCCCCCCCCCCCChhHHHHHHHHHhhcC-CCeEEEEE
Q 003943 6 AAGGGWYRARVKAVPSGDSLVITALSNPNPGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREFLRKLCI-GKEVTFRV 84 (784)
Q Consensus 6 ~~~~~~~~g~V~~V~dGDTi~v~~~~~~~~g~~~~~~VrLagIdAPe~~~~~~~~ep~a~eAre~Lr~ll~-Gk~V~v~~ 84 (784)
+..-..+.|+|++|+|||||.|..+ | ...+|||+||||||+ .||||.+|++||+++|. |+.|.|.+
T Consensus 4 ~~~~~~~~~~V~~V~DGDTi~v~~~-----g--~~~~VRL~gIDaPE~------~q~~g~~A~~~l~~ll~~g~~V~~~~ 70 (143)
T 4eqp_A 4 TKKLHKEPATLIKAIDGDTVKLMYK-----G--QPMTFRLLLVDTPEF------NEKYGPEASAFTKKMVENAKKDEVEF 70 (143)
T ss_dssp ---CCEEEEEEEEECSSSEEEEEET-----T--EEEEEEETTEECCCT------TSTTHHHHHHHHHHHHHHCSCEEEEC
T ss_pred CCCCceeeEEEEEEECCCEEEEEeC-----C--cEEEEEEEeecCCCc------CCchHHHHHHHHHHHHhcCCeEEEEE
Confidence 3445677899999999999999975 2 468999999999998 68999999999999998 89999998
Q ss_pred c--cccCCCCceEEEEEeCCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCCCcCCCCC
Q 003943 85 D--YAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPG 154 (784)
Q Consensus 85 ~--~~~d~ygR~~g~V~l~g~nin~~LV~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~GiWs~~~~ 154 (784)
+ ...|+|||.+|+||++|.+||++||++|||+++..+. .+..+.++|.+||++||++++|||+...|
T Consensus 71 d~~~~~D~ygR~la~v~~~g~~vn~~lv~~GlA~v~~~~~---~~~~~~~~~~~aE~~Ar~~k~GlW~~~~p 139 (143)
T 4eqp_A 71 DKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYK---GNNTHEQLLRKAEAQAKKEKLNIWSEDNA 139 (143)
T ss_dssp CSSCSBCTTSCEEEEEEETTEEHHHHHHHTTSSEECCCCT---TSCTTHHHHHHHHHHHHHTTCGGGC----
T ss_pred ccccccCCCCCEEEEEEECCchHHHHHHHCCCeEEEeecC---CCcchHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 6 3579999999999999999999999999999975543 23457788999999999999999998754
No 5
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=2.1e-15 Score=153.94 Aligned_cols=125 Identities=22% Similarity=0.259 Sum_probs=100.8
Q ss_pred cccEEEEEEecCCEEEEEecCCc----------------------ceEEEEEeeecCCCCCchhHHHHHHHHHHHHcCCc
Q 003943 617 RIPAVVEYVLSGHRFKVLIPKET----------------------CSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRD 674 (784)
Q Consensus 617 ~~~a~V~~V~DGdTl~v~~~~~~----------------------~~i~vrL~GIdaPe~~qpfg~eAk~~l~~~ll~r~ 674 (784)
-+.|+|+.|.+ +++.|+.-..| ..+++||+||++|+ .++|+.+|.+++++++.++.
T Consensus 68 wyRa~V~~v~~-~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~-~~~w~~eA~~~l~~lv~~k~ 145 (218)
T 2wac_A 68 WYRAKVERVQG-SNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPT-DNEDKEEALRAFSEDVLNHK 145 (218)
T ss_dssp EEEEEEEEEET-TEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS-SHHHHHHHHHHHHHHHBTCE
T ss_pred EEEEEEEEecC-CeEEEEEEecCCeEEEchHHcccCChhhccCCcceeEEEECCEECCC-CcchHHHHHHHHHHHhcCCE
Confidence 34677888766 77777643222 34578999999999 78999999999999999999
Q ss_pred eeEEEeeecCCCc-EEEEEEe--CCcchHHHHHHhCCeEEeeecCCCCCCChHHHHHHHHHHHHcccCCCCCC
Q 003943 675 VEIEVETVDRTGT-FLGSLWE--SRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENY 744 (784)
Q Consensus 675 V~v~~~~~DkyGr-~lg~v~~--~~~di~~~Lv~~GlA~v~~~~~~~~~~~~~~l~~aE~~Ak~~k~GlW~~~ 744 (784)
|.+.+...| +|+ .++.|+. ++.+||.+||++||||+++........+...|.+||++||++|+|||+..
T Consensus 146 v~~~v~~~d-~g~~~~V~L~~~~~~~~in~~Lv~~G~A~~~~~~~~~~~~~~~~~~~~e~~Ar~~r~GlW~~g 217 (218)
T 2wac_A 146 VQLNVELKV-TGSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGERKLKELVDQYKAAQEAARVAHLAIWKYG 217 (218)
T ss_dssp EEEEEEECC-TTSCEEEEEECTTTCCBHHHHHHHTTSSEECCCCCGGGHHHHHHHHHHHHHHHHTTCGGGTTC
T ss_pred EEEEEEEEc-CCceEEEEEEeCCCCccHHHHHHHCCCcccccccchhHHHHHHHHHHHHHHHHHhcCCCcccC
Confidence 999999999 999 9999997 47899999999999999732211111233579999999999999999853
No 6
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=99.55 E-value=4.7e-14 Score=143.95 Aligned_cols=133 Identities=17% Similarity=0.299 Sum_probs=106.3
Q ss_pred CCceEEEEEeEecCCCEEEEeeCCCCC-----------------CCCCceeEEEEEeccCCCCCCCCCCCChhHHHHHHH
Q 003943 8 GGGWYRARVKAVPSGDSLVITALSNPN-----------------PGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREF 70 (784)
Q Consensus 8 ~~~~~~g~V~~V~dGDTi~v~~~~~~~-----------------~g~~~~~~VrLagIdAPe~~~~~~~~ep~a~eAre~ 70 (784)
...+++|+|++|.+ |++.|..-+-+. .-|+...++||+||++|+ +++|+.+|+++
T Consensus 65 d~~wyRa~V~~v~~-~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~-------~~~w~~eA~~~ 136 (218)
T 2wac_A 65 DNQWYRAKVERVQG-SNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPT-------DNEDKEEALRA 136 (218)
T ss_dssp TCCEEEEEEEEEET-TEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS-------SHHHHHHHHHH
T ss_pred CCeEEEEEEEEecC-CeEEEEEEecCCeEEEchHHcccCChhhccCCcceeEEEECCEECCC-------CcchHHHHHHH
Confidence 46799999999977 888776432000 013456789999999998 47999999999
Q ss_pred HHhhcCCCeEEEEEccccCCCCc-eEEEEEe--CCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCCC
Q 003943 71 LRKLCIGKEVTFRVDYAVPNIGR-EFGTVIL--GDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLG 147 (784)
Q Consensus 71 Lr~ll~Gk~V~v~~~~~~d~ygR-~~g~V~l--~g~nin~~LV~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~G 147 (784)
|++++.|+.|.+.+.. ++ +|| .++.++. ++.+||+.||++|||+++.... .....+.++|.+||++||++++|
T Consensus 137 l~~lv~~k~v~~~v~~-~d-~g~~~~V~L~~~~~~~~in~~Lv~~G~A~~~~~~~--~~~~~~~~~~~~~e~~Ar~~r~G 212 (218)
T 2wac_A 137 FSEDVLNHKVQLNVEL-KV-TGSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGE--RKLKELVDQYKAAQEAARVAHLA 212 (218)
T ss_dssp HHHHHBTCEEEEEEEE-CC-TTSCEEEEEECTTTCCBHHHHHHHTTSSEECCCCC--GGGHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHhcCCEEEEEEEE-Ec-CCceEEEEEEeCCCCccHHHHHHHCCCcccccccc--hhHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999874 45 899 9999997 5899999999999999973321 01234567899999999999999
Q ss_pred CcCCC
Q 003943 148 RWSKV 152 (784)
Q Consensus 148 iWs~~ 152 (784)
||+..
T Consensus 213 lW~~g 217 (218)
T 2wac_A 213 IWKYG 217 (218)
T ss_dssp GGTTC
T ss_pred CcccC
Confidence 99753
No 7
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=99.39 E-value=1e-13 Score=144.61 Aligned_cols=131 Identities=20% Similarity=0.193 Sum_probs=15.6
Q ss_pred cccEEEEEEecCCEEEEEecCC------------------------cceEEEEEeeecCCCCCchhHHHHHHHHHHHHcC
Q 003943 617 RIPAVVEYVLSGHRFKVLIPKE------------------------TCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQ 672 (784)
Q Consensus 617 ~~~a~V~~V~DGdTl~v~~~~~------------------------~~~i~vrL~GIdaPe~~qpfg~eAk~~l~~~ll~ 672 (784)
-+.|+|+.|.+++++.|+...- ...+.+||+||++|+. +.|+.+|..++.+++++
T Consensus 81 wyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~~v~~p~~-~~~~~eA~~~l~~lv~~ 159 (246)
T 2hqx_A 81 WYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQD-DDARTDAVDSVVRDIQN 159 (246)
T ss_dssp EEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC-------------------------------
T ss_pred EEEEEEEEEcCCCeEEEEEEeCCCeEEEeHHHhhcCCHhHcCCCCchhhhhhhhhceecCCC-ccchHHHHHHHHHHhcC
Confidence 3468888888777887763221 2345789999999985 56999999999999999
Q ss_pred CceeEEEeeecCCCcEEEEEEe--CCcchHHHHHHhCCeEEeeecCCCCCCChHHHHHHHHHHHHcccCCCCCCCCCcc
Q 003943 673 RDVEIEVETVDRTGTFLGSLWE--SRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEE 749 (784)
Q Consensus 673 r~V~v~~~~~DkyGr~lg~v~~--~~~di~~~Lv~~GlA~v~~~~~~~~~~~~~~l~~aE~~Ak~~k~GlW~~~~p~~~ 749 (784)
+.|.+.+...|. |+.+++|+. ++.+||.+||++||||+++.|..........|.+||++||++|+|||+..++...
T Consensus 160 k~v~~~v~~~d~-g~~~v~L~~~~~~~~In~~LV~~GlA~~~~~~~~~~~~~~~~~~~~e~~Ar~~r~GlW~~gd~~~d 237 (246)
T 2hqx_A 160 TQCLLNVEHLSA-GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGDFRAD 237 (246)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CEEEEEEEEecC-CeEEEEEEeCCCCccHHHHHHHCCCEEecccchhhHHHHHHHHHHHHHHHHHhccCcccCCCCCcc
Confidence 999999988885 888888987 4689999999999999986654322344567999999999999999988776644
No 8
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=99.30 E-value=9.1e-13 Score=137.36 Aligned_cols=135 Identities=21% Similarity=0.298 Sum_probs=21.9
Q ss_pred CCceEEEEEeEecCCCEEEEeeCCCCC-------------------CCCCceeEEEEEeccCCCCCCCCCCCChhHHHHH
Q 003943 8 GGGWYRARVKAVPSGDSLVITALSNPN-------------------PGPPREKTLTLSSIITPRLARRGGLDEPFAWDSR 68 (784)
Q Consensus 8 ~~~~~~g~V~~V~dGDTi~v~~~~~~~-------------------~g~~~~~~VrLagIdAPe~~~~~~~~ep~a~eAr 68 (784)
...+++|+|++|.+++++.|..-+-+. .-|+...++||++|++|+. ..|+.+|.
T Consensus 78 d~~wyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~~v~~p~~-------~~~~~eA~ 150 (246)
T 2hqx_A 78 DGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQD-------DDARTDAV 150 (246)
T ss_dssp TSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC----------------------------
T ss_pred CCCEEEEEEEEEcCCCeEEEEEEeCCCeEEEeHHHhhcCCHhHcCCCCchhhhhhhhhceecCCC-------ccchHHHH
Confidence 468999999999988898876432000 0145567889999998873 45999999
Q ss_pred HHHHhhcCCCeEEEEEccccCCCCceEEEEEe--CCccHHHHHHhcCCEEEEEccCcCCCCchhHHHHHHHHHHHHHhCC
Q 003943 69 EFLRKLCIGKEVTFRVDYAVPNIGREFGTVIL--GDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGL 146 (784)
Q Consensus 69 e~Lr~ll~Gk~V~v~~~~~~d~ygR~~g~V~l--~g~nin~~LV~~GlA~v~~~~~~~~~~~~~~~~l~~aE~~Ar~~k~ 146 (784)
++|.+++.|+.|.+.++. ++ .||.+++||. ++.+||.+||++|||+++..+.. ....+...|.+||++||++++
T Consensus 151 ~~l~~lv~~k~v~~~v~~-~d-~g~~~v~L~~~~~~~~In~~LV~~GlA~~~~~~~~--~~~~~~~~~~~~e~~Ar~~r~ 226 (246)
T 2hqx_A 151 DSVVRDIQNTQCLLNVEH-LS-AGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEK--QFQKVITEYLNAQESAKSARL 226 (246)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCEEEEEEEE-ec-CCeEEEEEEeCCCCccHHHHHHHCCCEEecccchh--hHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999988874 34 3888888888 57899999999999999875521 122455789999999999999
Q ss_pred CCcCCCC
Q 003943 147 GRWSKVP 153 (784)
Q Consensus 147 GiWs~~~ 153 (784)
|||+..+
T Consensus 227 GlW~~gd 233 (246)
T 2hqx_A 227 NLWRYGD 233 (246)
T ss_dssp -------
T ss_pred CcccCCC
Confidence 9997653
No 9
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=96.32 E-value=0.02 Score=57.28 Aligned_cols=99 Identities=17% Similarity=0.191 Sum_probs=68.7
Q ss_pred CCceEEEEEeEecCCCEEEEeeCCCCC-----------------CCCCceeEEEEEeccCCCCCCCCCCCChhHHHHHHH
Q 003943 8 GGGWYRARVKAVPSGDSLVITALSNPN-----------------PGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREF 70 (784)
Q Consensus 8 ~~~~~~g~V~~V~dGDTi~v~~~~~~~-----------------~g~~~~~~VrLagIdAPe~~~~~~~~ep~a~eAre~ 70 (784)
...|++|+|+++.+.+++.|..-+-|. .=|+.-.+.+|++|..| +..|..+|.++
T Consensus 79 d~~wyRa~V~~~~~~~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--------~~~w~~ea~~~ 150 (201)
T 4b9w_A 79 DGNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--------NKHWTKEATAR 150 (201)
T ss_dssp TTEEEEEEEEEECTTSCEEEEETTTCCEEEECGGGEEECCGGGGSSCBCCEEEEESSEECS--------SSSCCHHHHHH
T ss_pred CCeEEEEEEEEECCCCeEEEEEEccCCEEEEEHHHhccChHhHcccchhhEEEEEcCEEcC--------CCCCCHHHHHH
Confidence 457999999999988888776432100 00224467777777643 34588999999
Q ss_pred HHhhcCCCeEEEEEccccCCCCceEEEEEe----CCccHHHHHHhcCCEE
Q 003943 71 LRKLCIGKEVTFRVDYAVPNIGREFGTVIL----GDKNVAMLVVSEGWAK 116 (784)
Q Consensus 71 Lr~ll~Gk~V~v~~~~~~d~ygR~~g~V~l----~g~nin~~LV~~GlA~ 116 (784)
+++++.||.+.+++....+ +.....++- ...+||..||++|||.
T Consensus 151 f~~l~~~k~l~~~V~~~~~--~~~~V~L~d~~~~~~~~I~~~Lv~~gLA~ 198 (201)
T 4b9w_A 151 FQACVVGLKLQARVVEITA--NGVGVELTDLSTPYPKIISDVLIREQLVL 198 (201)
T ss_dssp HHHHHTTCCEEEEEEEEET--TEEEEEEEECSSSSCEEHHHHHHHTTSSE
T ss_pred HHHHHCCCEEEEEEEEEeC--CEEEEEEEECCCCCccchHHHHHHCcCee
Confidence 9999999999988764322 233334442 2468999999999995
No 10
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=96.23 E-value=0.027 Score=57.52 Aligned_cols=100 Identities=17% Similarity=0.183 Sum_probs=70.1
Q ss_pred CCceEEEEEeEecCCCEEEEeeCCCCC-----------------CCCCceeEEEEEeccCCCCCCCCCCCChhHHHHHHH
Q 003943 8 GGGWYRARVKAVPSGDSLVITALSNPN-----------------PGPPREKTLTLSSIITPRLARRGGLDEPFAWDSREF 70 (784)
Q Consensus 8 ~~~~~~g~V~~V~dGDTi~v~~~~~~~-----------------~g~~~~~~VrLagIdAPe~~~~~~~~ep~a~eAre~ 70 (784)
...|++|+|.++.+.+++.|..-+-|. .=|+.-.+.+|++|..+ +..|..+|.++
T Consensus 79 d~~WyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--------~~~w~~ea~~~ 150 (226)
T 4b9x_A 79 DGNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--------NKHWTKEATAR 150 (226)
T ss_dssp TTEEEEEEEEEECSSSEEEEECTTTCCEEEEEGGGEECCCGGGSSSCBCCEEEEESSEECS--------SSSCCHHHHHH
T ss_pred CCeEEEEEEEEECCCCeEEEEEEecCCEEEEEHHHhccChHHHcccccceEEEEEecEECC--------CCCCCHHHHHH
Confidence 567999999999988888776432100 01234567777777633 34588999999
Q ss_pred HHhhcCCCeEEEEEccccCCCCceEEEEEe----CCccHHHHHHhcCCEEE
Q 003943 71 LRKLCIGKEVTFRVDYAVPNIGREFGTVIL----GDKNVAMLVVSEGWAKV 117 (784)
Q Consensus 71 Lr~ll~Gk~V~v~~~~~~d~ygR~~g~V~l----~g~nin~~LV~~GlA~v 117 (784)
+++++.||.+.+.+....+ +.....++- .+.+||..||++|||..
T Consensus 151 f~~l~~~k~l~~~V~~~~~--~~~~V~L~d~~~~~~~~I~~~Lv~~gla~~ 199 (226)
T 4b9x_A 151 FQACVVGLKLQARVVEITA--NGVGVELTDLSTPYPKIISDVLIREQLVLR 199 (226)
T ss_dssp HHHHHTTCCEEEEEEEECS--SCEEEEEEECSSSSCEEHHHHHHHTTSSEE
T ss_pred HHHHHCCCeEEEEEEEEeC--CeEEEEEEECCCCCCccHHHHHHHCCCccc
Confidence 9999999999998864322 233344443 24679999999999975
No 11
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=96.22 E-value=0.019 Score=58.61 Aligned_cols=119 Identities=12% Similarity=0.021 Sum_probs=76.0
Q ss_pred CCcccEEEEEeccCCEEEEEEcCCceEEEEEEeeecCCC--CCCCCCccccCcccccCCCccccccccchhhHHHHhhhc
Q 003943 185 GRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPA--VARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAAST 262 (784)
Q Consensus 185 ~~~~~~iVe~V~dG~t~rv~~~~~~~~i~v~l~GI~~P~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 262 (784)
|.-..|.|..+.+.+.+.|++.+-|....|.+.-|.... +..-++ ++= .-.|...
T Consensus 80 ~~WyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~-----qA~-----------~c~L~~v------- 136 (226)
T 4b9x_A 80 GNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPF-----QGM-----------QCWLVDI------- 136 (226)
T ss_dssp TEEEEEEEEEECSSSEEEEECTTTCCEEEEEGGGEECCCGGGSSSCB-----CCE-----------EEEESSE-------
T ss_pred CeEEEEEEEEECCCCeEEEEEEecCCEEEEEHHHhccChHHHccccc-----ceE-----------EEEEecE-------
Confidence 567789999998888999988875555555554444211 111000 000 0000000
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHccCCeEEEEEeeecCCCCEEEEEEecCCCchhHHHHHHHhcCceEEE
Q 003943 263 ASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYI 332 (784)
Q Consensus 263 ~~~~~~~~~epfg~EAk~f~~~~Ll~r~V~v~v~~~DkyGr~la~V~~~~g~~~~Dl~~eLL~~GlA~~~ 332 (784)
......|..+|..++++++.++.+.+.+...+..+ +.-.++-..+..+.+|+..|+++|||...
T Consensus 137 -----~p~~~~w~~ea~~~f~~l~~~k~l~~~V~~~~~~~-~~V~L~d~~~~~~~~I~~~Lv~~gla~~~ 200 (226)
T 4b9x_A 137 -----QPPNKHWTKEATARFQACVVGLKLQARVVEITANG-VGVELTDLSTPYPKIISDVLIREQLVLRC 200 (226)
T ss_dssp -----ECSSSSCCHHHHHHHHHHHTTCCEEEEEEEECSSC-EEEEEEECSSSSCEEHHHHHHHTTSSEEC
T ss_pred -----ECCCCCCCHHHHHHHHHHHCCCeEEEEEEEEeCCe-EEEEEEECCCCCCccHHHHHHHCCCcccc
Confidence 01134588999999999999999999988877554 44556655544456799999999999753
No 12
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=95.87 E-value=0.026 Score=56.45 Aligned_cols=117 Identities=12% Similarity=0.032 Sum_probs=71.9
Q ss_pred CCcccEEEEEeccCCEEEEEEcCCceEEEEEEeeecCC--CCCCCCCccccCcccccCCCccccccccchhhHHHHhhhc
Q 003943 185 GRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAP--AVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAAST 262 (784)
Q Consensus 185 ~~~~~~iVe~V~dG~t~rv~~~~~~~~i~v~l~GI~~P--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 262 (784)
|.-..|.|..+.+.+++.|++.+-+....|.+.-+... ++..-++ ++- .-.|...
T Consensus 80 ~~wyRa~V~~~~~~~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~-----qA~-----------~c~L~~v------- 136 (201)
T 4b9w_A 80 GNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPF-----QGM-----------QCWLVDI------- 136 (201)
T ss_dssp TEEEEEEEEEECTTSCEEEEETTTCCEEEECGGGEEECCGGGGSSCB-----CCE-----------EEEESSE-------
T ss_pred CeEEEEEEEEECCCCeEEEEEEccCCEEEEEHHHhccChHhHcccch-----hhE-----------EEEEcCE-------
Confidence 56678999999888889998887554444444433311 1111000 000 0000000
Q ss_pred ccCCCCCCCchhHHHHHHHHHHHccCCeEEEEEeeecCCCCEEEEEEecCCCchhHHHHHHHhcCceE
Q 003943 263 ASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAK 330 (784)
Q Consensus 263 ~~~~~~~~~epfg~EAk~f~~~~Ll~r~V~v~v~~~DkyGr~la~V~~~~g~~~~Dl~~eLL~~GlA~ 330 (784)
......|..+|..++++++.++.+.+.+...+..+ +.-.++...+..+.+|+..|+++|||.
T Consensus 137 -----~p~~~~w~~ea~~~f~~l~~~k~l~~~V~~~~~~~-~~V~L~d~~~~~~~~I~~~Lv~~gLA~ 198 (201)
T 4b9w_A 137 -----QPPNKHWTKEATARFQACVVGLKLQARVVEITANG-VGVELTDLSTPYPKIISDVLIREQLVL 198 (201)
T ss_dssp -----ECSSSSCCHHHHHHHHHHHTTCCEEEEEEEEETTE-EEEEEEECSSSSCEEHHHHHHHTTSSE
T ss_pred -----EcCCCCCCHHHHHHHHHHHCCCEEEEEEEEEeCCE-EEEEEEECCCCCccchHHHHHHCcCee
Confidence 01134588999999999999999999887766543 444555444444567999999999995
No 13
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=92.71 E-value=0.0061 Score=55.28 Aligned_cols=72 Identities=11% Similarity=0.024 Sum_probs=59.6
Q ss_pred CCCCCChhhhhHHHHHHHHHhhcCC----CEEEE-EEeeeeeccccccccccCCCCCCCCCCCCCccccccccCCCC
Q 003943 423 NPRKDEKPAAYAREAREFLRTRLIG----RQVNV-QMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAG 494 (784)
Q Consensus 423 ~~~~~~~~~~~~~eare~lR~~lig----k~v~v-~vdy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~p~~ 494 (784)
.|+.|..+.+...++..|+|.+++. ..+.| .|||++.+.+....++|+++.|...+.++-.|.|+.++-+..
T Consensus 32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~lP~qA~~c~L~~v~p~~~ 108 (110)
T 2diq_A 32 TVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIASGPS 108 (110)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCSSSCEEEEETTTCCEEEECGGGCEECCHHHHSSCCSSCCSCSSCSCCSCC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEeCCCeEEEehHHhhcCcHHHhCCCcceEEEEECCeEECCC
Confidence 4556667777767788999999974 34544 699999999999999999999999999999999999977654
No 14
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=92.62 E-value=0.58 Score=45.38 Aligned_cols=89 Identities=8% Similarity=0.047 Sum_probs=66.2
Q ss_pred CCCceEEEEEeEecCCCEEEEeeCCCCCCC-----------------CCceeEEEEEeccCCCCCCCCCCCChhHHHHHH
Q 003943 7 AGGGWYRARVKAVPSGDSLVITALSNPNPG-----------------PPREKTLTLSSIITPRLARRGGLDEPFAWDSRE 69 (784)
Q Consensus 7 ~~~~~~~g~V~~V~dGDTi~v~~~~~~~~g-----------------~~~~~~VrLagIdAPe~~~~~~~~ep~a~eAre 69 (784)
....|++|+|.++.+++++.|..-+ .+. |+.-.+.+|++|..|.- ..+|.+
T Consensus 60 ~d~~wyRa~I~~~~~~~~~~V~fvD--yGn~~~v~~lr~l~~~f~~lP~qA~~c~L~~v~~~~~----------~~ea~~ 127 (169)
T 3ntk_A 60 EDEVFYRAQIRKVLDDGKCEVHFID--FGNNAVTQQFRQLPEELAKPARYSRHCELDASTISKC----------DAALLQ 127 (169)
T ss_dssp TTTEEEEEEEEEECSTTCEEEEETT--TTEEEEESCEECCCHHHHSSCCSSEEEEECGGGSCHH----------HHHHHH
T ss_pred CCCcEEEEEEEEECCCCEEEEEEEe--cCCeEEhhhhhccCHHHhhCCceeEEEEECCcCCCCC----------hHHHHH
Confidence 4678999999999987777776432 111 33456777777775531 679999
Q ss_pred HHHhhcCCCeEEEEEccccCCCCceE-EEEEeCCccHHHHH
Q 003943 70 FLRKLCIGKEVTFRVDYAVPNIGREF-GTVILGDKNVAMLV 109 (784)
Q Consensus 70 ~Lr~ll~Gk~V~v~~~~~~d~ygR~~-g~V~l~g~nin~~L 109 (784)
++++++.||++.+.+.+..+ |-.+ ..+|..+.+||+.|
T Consensus 128 ~f~~l~~~k~l~~~V~~~~~--~~~~~V~L~~~~~~in~~L 166 (169)
T 3ntk_A 128 SFIDTRFSETFQVEILATKG--TGTHVVRLFYQSKNISEKL 166 (169)
T ss_dssp HHHHTTTTSEEEEEEEEECT--TSCEEEEEEETTEEHHHHC
T ss_pred HHHHHhCCCeEEEEEEEecC--CCCEEEEEEECCCCHHHHh
Confidence 99999999999999987433 4455 88888888999876
No 15
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=90.84 E-value=0.75 Score=44.57 Aligned_cols=82 Identities=16% Similarity=0.139 Sum_probs=60.0
Q ss_pred ccEEEEEEecCCEEEEEecCC--------------------cceEEEEEeeecCCCCCchhHHHHHHHHHHHHcCCceeE
Q 003943 618 IPAVVEYVLSGHRFKVLIPKE--------------------TCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEI 677 (784)
Q Consensus 618 ~~a~V~~V~DGdTl~v~~~~~--------------------~~~i~vrL~GIdaPe~~qpfg~eAk~~l~~~ll~r~V~v 677 (784)
+.|+|..+.+++++.|+.-.- ..-++.+|+||..|.. ..+|..++.++++++.+.+
T Consensus 65 yRa~I~~~~~~~~~~V~fvDyGn~~~v~~lr~l~~~f~~lP~qA~~c~L~~v~~~~~----~~ea~~~f~~l~~~k~l~~ 140 (169)
T 3ntk_A 65 YRAQIRKVLDDGKCEVHFIDFGNNAVTQQFRQLPEELAKPARYSRHCELDASTISKC----DAALLQSFIDTRFSETFQV 140 (169)
T ss_dssp EEEEEEEECSTTCEEEEETTTTEEEEESCEECCCHHHHSSCCSSEEEEECGGGSCHH----HHHHHHHHHHTTTTSEEEE
T ss_pred EEEEEEEECCCCEEEEEEEecCCeEEhhhhhccCHHHhhCCceeEEEEECCcCCCCC----hHHHHHHHHHHhCCCeEEE
Confidence 357777776655666653221 2346788899986642 7899999999999999999
Q ss_pred EEeeecCCCcEEEEEEeCCcchHHHH
Q 003943 678 EVETVDRTGTFLGSLWESRTNVAVIL 703 (784)
Q Consensus 678 ~~~~~DkyGr~lg~v~~~~~di~~~L 703 (784)
.+......+-....++.++.+||+.|
T Consensus 141 ~V~~~~~~~~~~V~L~~~~~~in~~L 166 (169)
T 3ntk_A 141 EILATKGTGTHVVRLFYQSKNISEKL 166 (169)
T ss_dssp EEEEECTTSCEEEEEEETTEEHHHHC
T ss_pred EEEEecCCCCEEEEEEECCCCHHHHh
Confidence 99886443333388998888999876
No 16
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=82.79 E-value=0.055 Score=47.45 Aligned_cols=62 Identities=11% Similarity=0.034 Sum_probs=48.0
Q ss_pred CCCCCChhhhhHHHHHHHHHhhcCC----CEEEE-EEeeeeeccccccccccCCCCCCCCCCCCCcc
Q 003943 423 NPRKDEKPAAYAREAREFLRTRLIG----RQVNV-QMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTK 484 (784)
Q Consensus 423 ~~~~~~~~~~~~~eare~lR~~lig----k~v~v-~vdy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (784)
.|+.|..+.+...++..|+|.++++ ..+.| .|||++.+.+....++|+++.|..-+.++-.|
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~~~~~~V~fvDyGn~e~v~~~~lr~l~~~f~~lP~qA~~C 93 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIEC 93 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETTTCCEEEECGGGCEECCGGGGCSCCCCCCC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEcCCCeEEEEHHHhhhcCHHHhcCCcceEEe
Confidence 4556777777767889999999963 35544 69999999998889999999887777665444
No 17
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=75.46 E-value=0.12 Score=45.02 Aligned_cols=56 Identities=11% Similarity=-0.004 Sum_probs=40.0
Q ss_pred CCCCChhhhhHHHHHHHHHhhcCC-----CEEEE-EEeeeeeccccccccccCCCCCCCCCC
Q 003943 424 PRKDEKPAAYAREAREFLRTRLIG-----RQVNV-QMEYSRKVVVEAAPVAAGAKGPAGTKG 479 (784)
Q Consensus 424 ~~~~~~~~~~~~eare~lR~~lig-----k~v~v-~vdy~~~~~~~~~~~~~~~~~~~~~~~ 479 (784)
++.|..|.+...++..|+|.+|.. .++.| ++||++.+.++...++|++++++...+
T Consensus 11 ~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~~~~~~~~~~ 72 (88)
T 1g5v_A 11 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICEVANNIE 72 (88)
T ss_dssp CCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCCC--------
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccCChhhccccc
Confidence 455778998889999999999952 45544 589999999999999999998887664
No 18
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=63.29 E-value=0.4 Score=39.09 Aligned_cols=50 Identities=10% Similarity=0.027 Sum_probs=39.8
Q ss_pred CCCCCChhhhhHHHHHHHHHhhcCC-----CEEEE-EEeeeeeccccccccccCCC
Q 003943 423 NPRKDEKPAAYAREAREFLRTRLIG-----RQVNV-QMEYSRKVVVEAAPVAAGAK 472 (784)
Q Consensus 423 ~~~~~~~~~~~~~eare~lR~~lig-----k~v~v-~vdy~~~~~~~~~~~~~~~~ 472 (784)
.++.|..|.+...++..|+|.++.. ..+.| ++||++.+.++...++|++-
T Consensus 8 ~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lrpl~~ 63 (64)
T 4a4f_A 8 SWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEE 63 (64)
T ss_dssp CCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEECCSC
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcEeCCC
Confidence 4667888998889999999999953 35544 68999999888778888764
No 19
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=61.68 E-value=0.58 Score=39.71 Aligned_cols=55 Identities=13% Similarity=0.034 Sum_probs=42.7
Q ss_pred CCCCChhhhhHHHHHHHHHhhcCC-----CEEEE-EEeeeeeccccccccccCCCCCCCCC
Q 003943 424 PRKDEKPAAYAREAREFLRTRLIG-----RQVNV-QMEYSRKVVVEAAPVAAGAKGPAGTK 478 (784)
Q Consensus 424 ~~~~~~~~~~~~eare~lR~~lig-----k~v~v-~vdy~~~~~~~~~~~~~~~~~~~~~~ 478 (784)
|+.|..+.+...++..|+|.++.. .++.| ++||++.+.+....++|+++.+--..
T Consensus 10 ~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ll~~~ 70 (78)
T 2d9t_A 10 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTEAWVRD 70 (78)
T ss_dssp CCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCCCCCCC
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHHHhhhc
Confidence 445677888888889999999952 45544 58999999999999999998764333
No 20
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=50.17 E-value=0.55 Score=39.82 Aligned_cols=50 Identities=12% Similarity=0.058 Sum_probs=37.8
Q ss_pred CCCCChhhhhHHHHHHHHHhhcCC-----CEEE-EEEeeeeeccccccccccCCCC
Q 003943 424 PRKDEKPAAYAREAREFLRTRLIG-----RQVN-VQMEYSRKVVVEAAPVAAGAKG 473 (784)
Q Consensus 424 ~~~~~~~~~~~~eare~lR~~lig-----k~v~-v~vdy~~~~~~~~~~~~~~~~~ 473 (784)
++.|..|.+...++..|+|.++.. ..+. +++||++.+.+....++|+|+.
T Consensus 18 ~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~~ 73 (77)
T 3pnw_C 18 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE 73 (77)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC---
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECChh
Confidence 455678888888899999999943 3554 4689999998888888888873
No 21
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.23 E-value=0.4 Score=41.41 Aligned_cols=56 Identities=14% Similarity=0.076 Sum_probs=42.1
Q ss_pred CCCCCCCCCChhhhhHHHHHHHHHhhcC---C-CEEEE-EEeeeeeccccccccccCCCCC
Q 003943 419 PKIGNPRKDEKPAAYAREAREFLRTRLI---G-RQVNV-QMEYSRKVVVEAAPVAAGAKGP 474 (784)
Q Consensus 419 P~~~~~~~~~~~~~~~~eare~lR~~li---g-k~v~v-~vdy~~~~~~~~~~~~~~~~~~ 474 (784)
|..-.++.|..+.+.+.+.++|+|.+++ + ..|.| .+||++...++...++|+++.|
T Consensus 17 ~~~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~veVl~~DyGn~~~V~~~~LR~L~~~l 77 (85)
T 2eqk_A 17 WEPVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTLVEVLLYDVGVELVVNVDCLRKLEENL 77 (85)
T ss_dssp CCCCCCCSSCEEEEECSSSCCEEEEEEEEECSSSEEEEECTTTCCEEEEETTTEEECCHHH
T ss_pred CcccCccCCCEEEEEeCCCCeEEEEEEEEecCCCeEEEEEEccCCEEEEEccccccCCHHH
Confidence 3333455666777888888899999995 2 34755 5899999999888899988754
No 22
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=21.90 E-value=1.1e+02 Score=27.88 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=30.5
Q ss_pred HHHHhhhcCCccc--EEEEEec-cCCEEEEEEcCCceEEEEEEe
Q 003943 177 MALLDANKGRPMQ--GIVEQAR-DGSTLRVYLLPEFQFVQVFVA 217 (784)
Q Consensus 177 ~~~~~~~~~~~~~--~iVe~V~-dG~t~rv~~~~~~~~i~v~l~ 217 (784)
-++|..+.|+++. |.|+++. +|+++.+.- .++..++|.|.
T Consensus 14 ~s~L~~fvgk~VrivGkV~~~~~~g~~~~l~s-~Dg~~Vtv~l~ 56 (121)
T 3kdf_A 14 AGMLAQFIDKPVCFVGRLEKIHPTGKMFILSD-GEGKNGTIELM 56 (121)
T ss_dssp GGGGGGGTTCEEEEEEEEEEECTTSSEEEEEC-TTSCEEEEECS
T ss_pred HHHHHhhCCCeEEEEEEEEEEcCCCCEEEEEe-CCCCEEEEEeC
Confidence 3566777888877 5589998 799999874 46678888874
No 23
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.47 E-value=5.8 Score=33.26 Aligned_cols=52 Identities=8% Similarity=-0.055 Sum_probs=38.2
Q ss_pred CCCCCCCChhhhhHHHHHHHHHhhcC---C-CEEEE-EEeeeeeccccccccccCCCCC
Q 003943 421 IGNPRKDEKPAAYAREAREFLRTRLI---G-RQVNV-QMEYSRKVVVEAAPVAAGAKGP 474 (784)
Q Consensus 421 ~~~~~~~~~~~~~~~eare~lR~~li---g-k~v~v-~vdy~~~~~~~~~~~~~~~~~~ 474 (784)
...++.|+.+.+... +..|+|.++. + .++.| ++|| +.+.+....++|+|+++
T Consensus 7 ~~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~~~~~~V~f~Dy-n~e~v~~~~lrplp~~~ 63 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DCRYYPAKIEAINKEGTFTVQFYDG-VIRCLKRMHIKAMPEDA 63 (74)
T ss_dssp CCCCCTTCEEEEECS-SSSEEEEEEEEESTTSSEEEEETTS-CEEEECGGGEECCCGGG
T ss_pred CCCCCCCCEEEEECC-CCCEEEEEEEEECCCCEEEEEEecC-CeEEecHHHCeeCChhH
Confidence 334566778887766 9999999985 2 23444 5689 88888888999998853
Done!