BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 003944
         (784 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QAV|A Chain A, Crystal Structure Of A Glutathione S-transferase From
           Antarctic Clam Laternula Elliptica
 pdb|3QAW|A Chain A, Crystal Structure Of A Glutathione-s-transferase From
           Antarctic Clam Laternula Elliptica In A Complex With
           Glutathione
          Length = 243

 Score = 30.8 bits (68), Expect = 3.1,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 9/140 (6%)

Query: 330 KMEKTELVAALEKNRKSSNEKI-FPDASEYPSRLDGKMVSSESFPGKEEMEQSLQKLEKD 388
           K++  E + +  K    S E +      + P+  DG +V +ES      +E+   K+   
Sbjct: 49  KIDYDEKIISFSKKEHKSEEILELNPRGQVPTFTDGDVVVNESTAICMYLEEKYPKVPLF 108

Query: 389 LKETCSERDKALQ---ELTRLKQHLIEKAQEESEKMDEDSKIIEELRENNEYQRAQILHL 445
             +T + R K  Q   E + +  +++E  Q + +  D   +++  L+E  +    ++ H 
Sbjct: 109 PSDT-TIRAKVYQRMFETSNISTNVMEFVQYKMKNKDSIDQVL--LKEKKDKAHVELGHW 165

Query: 446 ENVLKQT--LAKQEEFKMMN 463
           EN LKQT      +EF M +
Sbjct: 166 ENYLKQTGGFVATKEFTMAD 185


>pdb|3MSU|A Chain A, Crystal Structure Of Citrate Synthase From Francisella
           Tular
 pdb|3MSU|B Chain B, Crystal Structure Of Citrate Synthase From Francisella
           Tular
          Length = 427

 Score = 30.4 bits (67), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 3/40 (7%)

Query: 534 KNADQRAEVSRSEKEEILVKLSHSEKMLAEGKGRANKLEE 573
           KN D RA   +   EEIL KL HS+  L      A KLEE
Sbjct: 314 KNTDPRATAMKKNCEEILAKLGHSDNPLLT---VAKKLEE 350


>pdb|1Z68|A Chain A, Crystal Structure Of Human Fibroblast Activation Protein
           Alpha
 pdb|1Z68|B Chain B, Crystal Structure Of Human Fibroblast Activation Protein
           Alpha
          Length = 719

 Score = 29.6 bits (65), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 40/165 (24%), Positives = 64/165 (38%), Gaps = 23/165 (13%)

Query: 310 DVVENLKRVVATLEKENNSLKMEKTELVAALEKNRKSSNEKIFPDASEYPSRLDGKMVSS 369
           D VEN  ++ +   +  N  ++ +  L         SSNE       EYP R +   +S 
Sbjct: 344 DTVENAIQITSGKWEAINIFRVTQDSLF-------YSSNE-----FEEYPGRRNIYRISI 391

Query: 370 ESFPGKEEMEQSLQKLEKDLKETCSERDKALQELTRLKQHLIEKAQEESEKMDEDSKIIE 429
            S+P  ++      + E+    T S  D A           I  +     + D++ KI+E
Sbjct: 392 GSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451

Query: 430 ELRENNEYQRAQILHLENVLKQTLAKQEEFKMMNHSEIQKSKEII 474
           E +E           LEN LK     +EE K +   EI    ++I
Sbjct: 452 ENKE-----------LENALKNIQLPKEEIKKLEVDEITLWYKMI 485


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.128    0.337 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,443,343
Number of Sequences: 62578
Number of extensions: 662370
Number of successful extensions: 2220
Number of sequences better than 100.0: 87
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 81
Number of HSP's that attempted gapping in prelim test: 2110
Number of HSP's gapped (non-prelim): 161
length of query: 784
length of database: 14,973,337
effective HSP length: 107
effective length of query: 677
effective length of database: 8,277,491
effective search space: 5603861407
effective search space used: 5603861407
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)